ttype	patient	gene	classification	type	chr	pos	ref_allele	newbase	context65	cons46
BRCA	BR-0001	PRAMEF4	SNP	Synonymous	1	12942094	G	A	37	48
BRCA	BR-0001	IVL	SNP	Missense	1	152883016	A	G	7	52
BRCA	BR-0001	ZBTB37	DEL	Splice_Site_Del	1	173837392	AGGCA	-	11	51
BRCA	BR-0001	CHIT1	SNP	Missense_Mutation	1	203191404	C	T	30	90
BRCA	BR-0001	TRIM49	SNP	Missense	11	89531510	C	T	17	36
BRCA	BR-0001	DRD5	SNP	Missense	4	9784617	T	C	55	88
BRCA	BR-0001	GRM4	INS	Frame_Shift_Ins	6	34100851	-	G	59	37
BRCA	BR-0002	TCHH	SNP	Missense_Mutation	1	152081726	C	T	32	50
BRCA	BR-0002	IVL	SNP	Missense	1	152883009	T	C	54	44
BRCA	BR-0002	SPEN	SNP	Missense	1	16255140	T	G	59	51
BRCA	BR-0002	SPEN	SNP	Missense	1	16255142	G	C	41	91
BRCA	BR-0002	ILDR2	SNP	Silent	1	166927145	G	A	45	67
BRCA	BR-0002	VAMP4	SNP	Nonsense_Mutation	1	171678834	G	A	37	72
BRCA	BR-0002	TNN	SNP	Silent	1	175097269	G	A	41	63
BRCA	BR-0002	HMCN1	SNP	Nonsense_Mutation	1	186031088	C	A	29	61
BRCA	BR-0002	NFASC	SNP	Silent	1	204924024	C	A	30	56
BRCA	BR-0002	EIF4G3	SNP	Nonsense_Mutation	1	21268004	G	C	45	80
BRCA	BR-0002	TARBP1	SNP	Synonymous	1	234553884	C	T	29	64
BRCA	BR-0002	TARBP1	SNP	Synonymous	1	234553935	G	A	45	47
BRCA	BR-0002	GTPBP4	SNP	Missense	10	1058471	G	C	45	97
BRCA	BR-0002	ANUBL1	SNP	Missense_Mutation	10	46143950	C	T	32	94
BRCA	BR-0002	VDAC2	SNP	Nonsense_Mutation	10	76982036	C	G	29	85
BRCA	BR-0002	RGR	SNP	Missense_Mutation	10	86012643	C	T	32	62
BRCA	BR-0002	QSER1	SNP	Missense_Mutation	11	32954075	C	T	24	61
BRCA	BR-0002	OSBP	SNP	Nonsense_Mutation	11	59376180	G	C	45	86
BRCA	BR-0002	SF3B2	SNP	Missense	11	65835787	C	T	25	98
BRCA	BR-0002	PACS1	SNP	Missense	11	65977843	G	A	33	83
BRCA	BR-0002	NOS1	SNP	Missense	12	117669913	C	T	31	97
BRCA	BR-0002	PITPNM2	SNP	Nonsense_Mutation	12	123485369	C	A	29	69
BRCA	BR-0002	FAM186A	SNP	Synonymous	12	50746166	G	C	45	45
BRCA	BR-0002	CLLU1OS	SNP	Missense_Mutation	12	92814847	C	T	32	52
BRCA	BR-0002	KL	SNP	Nonsense_Mutation	13	33627952	C	T	29	100
BRCA	BR-0002	APEX1	SNP	Silent	14	20925406	C	T	29	54
BRCA	BR-0002	SALL2	SNP	Missense_Mutation	14	21992809	C	G	32	68
BRCA	BR-0002	CDKL1	SNP	Missense	14	50829725	C	G	29	51
BRCA	BR-0002	NID2	SNP	Missense_Mutation	14	52520852	C	T	29	59
BRCA	BR-0002	ADAMTS17	SNP	Missense_Mutation	15	100537601	C	G	29	78
BRCA	BR-0002	VPS13C	SNP	Missense_Mutation	15	62202444	C	G	29	82
BRCA	BR-0002	ZNF609	SNP	Missense_Mutation	15	64967841	G	A	45	100
BRCA	BR-0002	SRRM2	SNP	Missense_Mutation	16	2815863	G	C	41	51
BRCA	BR-0002	MMP15	SNP	Missense_Mutation	16	58073982	C	G	18	53
BRCA	BR-0002	C17orf39	SNP	Silent	17	17957467	C	T	31	55
BRCA	BR-0002	KIAA0100	SNP	Missense_Mutation	17	26955466	C	G	29	98
BRCA	BR-0002	CPD	SNP	Missense_Mutation	17	28748817	C	T	30	80
BRCA	BR-0002	TRIM37	SNP	Missense	17	57105827	C	T	22	85
BRCA	BR-0002	RPS6KB1	SNP	Missense	17	58024096	C	A	17	96
BRCA	BR-0002	TP53	SNP	Missense_Mutation	17	7577106	G	A	41	95
BRCA	BR-0002	NPLOC4	SNP	Missense_Mutation	17	79563247	C	G	32	100
BRCA	BR-0002	KIAA0802	SNP	Splice_Site	18	8796229	G	C	33	87
BRCA	BR-0002	SFRS14	SNP	Missense_Mutation	19	19136589	C	A	30	57
BRCA	BR-0002	ZNF568	SNP	Missense_Mutation	19	37441932	G	C	33	49
BRCA	BR-0002	CIC	SNP	Nonsense_Mutation	19	42791030	C	T	21	90
BRCA	BR-0002	IRGQ	SNP	Silent	19	44099419	G	A	37	48
BRCA	BR-0002	MUC16	SNP	Missense_Mutation	19	9062785	T	C	60	48
BRCA	BR-0002	TUBA3E	SNP	Missense_Mutation	2	130953785	C	T	29	74
BRCA	BR-0002	NR4A2	SNP	Missense_Mutation	2	157183425	G	A	38	85
BRCA	BR-0002	SP100	SNP	Missense_Mutation	2	231314378	G	A	41	44
BRCA	BR-0002	SP100	SNP	Missense_Mutation	2	231314967	G	C	33	50
BRCA	BR-0002	ITSN2	SNP	Nonsense_Mutation	2	24526705	G	A	45	63
BRCA	BR-0002	BIRC6	SNP	Missense_Mutation	2	32678880	T	G	51	56
BRCA	BR-0002	C2orf63	SNP	Missense_Mutation	2	55439929	C	T	31	57
BRCA	BR-0002	EIF2AK3	SNP	Splice_site	2	88890569	A	G	6	90
BRCA	BR-0002	BPI	SNP	Missense	20	36938973	C	T	29	59
BRCA	BR-0002	TMPRSS15	SNP	Nonsense_Mutation	21	19685299	G	A	47	60
BRCA	BR-0002	SON	SNP	Missense_Mutation	21	34922772	C	T	23	52
BRCA	BR-0002	CARD10	SNP	Missense_Mutation	22	37898681	G	C	33	75
BRCA	BR-0002	MAFF	SNP	Missense_Mutation	22	38610477	G	A	45	63
BRCA	BR-0002	STAG2	SNP	Splice_Site_SNP	23	123197697	G	C	34	97
BRCA	BR-0002	MCF2	SNP	Missense_Mutation	23	138668603	C	T	30	80
BRCA	BR-0002	ZFX	SNP	Silent	23	24197640	C	G	32	58
BRCA	BR-0002	SMEK3P	SNP	Missense	23	27479117	C	G	32	34
BRCA	BR-0002	PPP2R3B	SNP	Splice_Site	23	308072	C	T	32	63
BRCA	BR-0002	FAM47C	SNP	Missense	23	37027730	C	T	31	9
BRCA	BR-0002	KCND1	SNP	Splice_Site	23	48823167	C	A	18	96
BRCA	BR-0002	MRPS25	SNP	Missense_Mutation	3	15094075	C	T	31	52
BRCA	BR-0002	MUC4	SNP	Missense	3	195510706	G	A	36	70
BRCA	BR-0002	ZNF385D	SNP	Missense_Mutation	3	21606070	G	C	33	100
BRCA	BR-0002	SCN10A	SNP	Missense	3	38812779	A	C	4	90
BRCA	BR-0002	MED28	SNP	Missense_Mutation	4	17616360	C	T	31	70
BRCA	BR-0002	CHRNA9	SNP	Silent	4	40351427	G	A	45	59
BRCA	BR-0002	YTHDC2	SNP	Missense_Mutation	5	112868687	G	C	33	98
BRCA	BR-0002	SEC24A	SNP	Missense	5	134010826	G	C	33	100
BRCA	BR-0002	ODZ2	SNP	Missense_Mutation	5	167645662	G	A	41	77
BRCA	BR-0002	NSD1	SNP	Missense_Mutation	5	176721105	C	G	29	63
BRCA	BR-0002	SDHA	SNP	Missense_Mutation	5	226026	G	C	33	96
BRCA	BR-0002	SLC45A2	SNP	Missense_Mutation	5	33982496	C	T	24	50
BRCA	BR-0002	ACTBL2	SNP	Missense_Mutation	5	56777819	C	T	23	59
BRCA	BR-0002	PPIL6	SNP	Silent	6	109721258	A	G	16	52
BRCA	BR-0002	MYB	SNP	Synonymous	6	135539052	G	A	33	57
BRCA	BR-0002	RANBP9	SNP	Synonymous	6	13625988	G	A	45	81
BRCA	BR-0002	REPS1	SNP	Missense	6	139247600	C	T	29	98
BRCA	BR-0002	SYNE1	SNP	Missense	6	152772267	G	C	33	58
BRCA	BR-0002	NUP153	SNP	Nonsense	6	17629707	G	T	45	56
BRCA	BR-0002	MDC1	SNP	Missense_Mutation	6	30680851	C	G	30	50
BRCA	BR-0002	COL11A2	SNP	Silent	6	33148086	G	A	41	51
BRCA	BR-0002	KIFC1	SNP	Missense_Mutation	6	33371895	G	A	33	68
BRCA	BR-0002	TBCC	SNP	Missense_Mutation	6	42713445	C	T	26	54
BRCA	BR-0002	COL21A1	SNP	Silent	6	56044743	G	A	37	25
BRCA	BR-0002	PIP5K1P1	SNP	Synonymous	6	7987072	C	T	19	58
BRCA	BR-0002	GPR85	SNP	Silent	7	112724441	G	C	33	51
BRCA	BR-0002	VWDE	SNP	Missense	7	12376890	G	A	45	57
BRCA	BR-0002	NOS3	SNP	Missense_Mutation	7	150690919	G	C	41	80
BRCA	BR-0002	NFE2L3	SNP	Missense_Mutation	7	26224617	C	G	29	47
BRCA	BR-0002	POLD2	SNP	Missense_Mutation	7	44155411	C	G	30	68
BRCA	BR-0002	PCLO	SNP	Synonymous	7	82582628	C	T	29	54
BRCA	BR-0002	TOP1MT	SNP	Missense_Mutation	8	144403390	C	G	32	56
BRCA	BR-0002	TOP1MT	SNP	Missense	8	144403540	C	G	30	89
BRCA	BR-0002	GSDMD	SNP	Silent	8	144644187	G	A	47	51
BRCA	BR-0002	PDE7A	SNP	Splice_site	8	66692036	C	T	32	91
BRCA	BR-0002	KCNB2	SNP	Silent	8	73848478	G	T	45	50
BRCA	BR-0002	FKBP15	SNP	Missense_Mutation	9	115931682	C	T	31	42
BRCA	BR-0002	GOLGA1	SNP	Synonymous	9	127693608	C	T	24	55
BRCA	BR-0003	FAM160B1	SNP	Missense_Mutation	10	116605972	A	T	8	78
BRCA	BR-0003	MRGPRX4	SNP	Missense_Mutation	11	18194855	C	T	19	52
BRCA	BR-0003	ATP6V0A2	SNP	Synonymous	12	124229239	G	A	36	63
BRCA	BR-0003	INSM2	SNP	Missense	14	36005002	G	T	43	56
BRCA	BR-0003	ADCY7	SNP	Missense	16	50342651	C	T	18	56
BRCA	BR-0003	HN1	DEL	Splice_site	17	73142778	C	-	30	77
BRCA	BR-0003	SLC26A11	SNP	Missense_Mutation	17	78195586	C	T	23	96
BRCA	BR-0003	CLUL1	SNP	Nonsense	18	624924	C	A	26	59
BRCA	BR-0003	KCNK6	SNP	Missense_Mutation	19	38810837	T	G	58	10
BRCA	BR-0003	NLRP12	SNP	Missense_Mutation	19	54313492	A	G	12	70
BRCA	BR-0003	MXRA5	SNP	Silent	23	3228603	C	T	31	35
BRCA	BR-0003	MME	SNP	Silent	3	154858036	A	T	8	38
BRCA	BR-0003	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-0003	MUC4	SNP	Missense	3	195513298	A	G	3	51
BRCA	BR-0003	SCN5A	SNP	Missense_Mutation	3	38622673	C	T	27	62
BRCA	BR-0003	GK3P	SNP	Missense	4	166199361	C	G	17	51
BRCA	BR-0003	SLC6A19	SNP	Silent	5	1221908	T	C	55	44
BRCA	BR-0003	PDE8B	SNP	Silent	5	76649228	G	A	34	54
BRCA	BR-0003	MEF2C	SNP	Silent	5	88018601	G	A	40	74
BRCA	BR-0003	OPN5	SNP	Missense	6	47749839	C	T	27	44
BRCA	BR-0003	FUT7	SNP	Missense_Mutation	9	139925442	G	A	36	65
BRCA	BR-0004	PRMT6	SNP	Missense	1	107600392	G	T	38	50
BRCA	BR-0004	NOTCH2	DNP	Missense	1	120529684	TC	CA	54	79
BRCA	BR-0004	RYR2	SNP	Splice_site	1	237893655	C	A	25	98
BRCA	BR-0004	NOC2L	SNP	Missense	1	889206	G	A	42	95
BRCA	BR-0004	ZNF644	SNP	Missense	1	91404735	C	A	28	52
BRCA	BR-0004	FAM21A	SNP	Synonymous	10	51853140	C	T	19	43
BRCA	BR-0004	ATP5C1	SNP	Missense	10	7844304	A	T	8	64
BRCA	BR-0004	LGI1	SNP	Missense	10	95556884	A	G	4	91
BRCA	BR-0004	LYVE1	SNP	Missense	11	10585799	C	T	23	59
BRCA	BR-0004	EXPH5	SNP	Missense	11	108384826	C	T	23	64
BRCA	BR-0004	POLD3	SNP	Missense	11	74329821	C	T	19	54
BRCA	BR-0004	GABARAPL1	SNP	Missense	12	10370732	A	T	10	82
BRCA	BR-0004	TXNRD1	SNP	Synonymous	12	104720193	A	C	13	53
BRCA	BR-0004	TCTN2	SNP	Synonymous	12	124171430	C	T	23	42
BRCA	BR-0004	ESPL1	SNP	Missense	12	53675342	G	A	45	75
BRCA	BR-0004	CCDC77	SNP	Missense	12	551076	G	C	33	84
BRCA	BR-0004	MAB21L1	SNP	Missense	13	36049764	G	A	40	100
BRCA	BR-0004	CGNL1	SNP	Missense	15	57731230	A	T	16	77
BRCA	BR-0004	WHAMM	SNP	Missense	15	83495558	A	T	9	82
BRCA	BR-0004	HYDIN	SNP	Missense	16	70989430	C	G	28	51
BRCA	BR-0004	HP	SNP	Missense	16	72094238	T	G	53	63
BRCA	BR-0004	GPATCH8	SNP	Nonsense	17	42541874	C	T	30	100
BRCA	BR-0004	MIB1	SNP	Missense	18	19437103	T	C	55	88
BRCA	BR-0004	ZNF808	SNP	Missense	19	53056891	A	G	4	53
BRCA	BR-0004	ZNF121	SNP	Nonsense	19	9676731	G	T	45	60
BRCA	BR-0004	ABCA12	SNP	Synonymous	2	215866406	T	G	59	40
BRCA	BR-0004	XPO1	SNP	Missense	2	61725884	G	C	48	100
BRCA	BR-0004	ZNF638	SNP	Missense	2	71633367	A	G	8	75
BRCA	BR-0004	CPSF3	SNP	Missense	2	9572785	G	A	38	88
BRCA	BR-0004	PATZ1	SNP	Missense	22	31741053	C	T	22	66
BRCA	BR-0004	DMD	SNP	Missense	23	31947838	G	A	38	82
BRCA	BR-0004	ZDHHC15	SNP	Missense	23	74641773	G	T	44	51
BRCA	BR-0004	WNT7A	SNP	Missense	3	13916470	G	T	44	99
BRCA	BR-0004	CP	SNP	Missense	3	148930279	G	C	44	74
BRCA	BR-0004	ACTL6A	SNP	Missense	3	179298701	A	C	2	90
BRCA	BR-0004	DGKG	SNP	Nonsense	3	185906042	C	A	30	59
BRCA	BR-0004	ITIH1	SNP	Missense	3	52816191	T	A	56	88
BRCA	BR-0004	ANK2	SNP	Nonsense	4	114286335	G	T	45	96
BRCA	BR-0004	PDE5A	SNP	Missense	4	120463729	C	T	31	71
BRCA	BR-0004	C4orf35	SNP	Missense	4	71201675	G	C	34	52
BRCA	BR-0004	SLC4A4	SNP	Splice_Site_SNP	4	72313452	T	A	57	93
BRCA	BR-0004	ZNF608	SNP	Synonymous	5	123983014	A	G	16	51
BRCA	BR-0004	BHMT	SNP	Missense	5	78426896	A	T	7	91
BRCA	BR-0004	DPYS	SNP	Missense	8	105440307	G	T	48	63
BRCA	BR-0004	SPAG11A	DEL	Frame_Shift_Del	8	7717922	T	-	56	53
BRCA	BR-0005	LOC100133331	SNP	Missense	1	664790	A	T	7	38
BRCA	BR-0005	ZNF705A	SNP	Synonymous	12	8327888	A	G	3	47
BRCA	BR-0005	FBXO33	SNP	Synonymous	14	39870474	T	C	51	42
BRCA	BR-0005	ACAN	SNP	Missense	15	89399986	C	G	17	40
BRCA	BR-0005	ABAT	SNP	Missense	16	8873407	T	G	52	47
BRCA	BR-0005	LAMA1	SNP	Missense	18	6943256	G	A	46	52
BRCA	BR-0005	LIMS1	SNP	Splice_Site_SNP	2	109276221	G	T	44	83
BRCA	BR-0005	PIK3CA	SNP	Missense	3	178936092	A	C	11	90
BRCA	BR-0005	MUC4	SNP	Missense	3	195511884	G	C	40	53
BRCA	BR-0005	PCDHGB1	SNP	Missense	5	140731116	C	T	30	56
BRCA	BR-0005	DPYSL3	SNP	Synonymous	5	146795426	C	A	21	80
BRCA	BR-0005	UIMC1	SNP	Missense	5	176397717	A	G	5	54
BRCA	BR-0005	PTPRK	SNP	Synonymous	6	128326380	A	T	15	54
BRCA	BR-0005	HLA-DQA1	DEL	Frame_Shift_Del	6	32610142	TTCTGTCTCTC	-	64	42
BRCA	BR-0005	MLL3	SNP	Nonsense	7	151877822	G	A	47	77
BRCA	BR-0005	TRRAP	SNP	Synonymous	7	98569565	G	A	45	69
BRCA	BR-0005	TRPM6	SNP	Splice_site	9	77354640	C	T	24	100
BRCA	BR-0006	ATP8B2	SNP	Synonymous	1	154321573	C	T	23	30
BRCA	BR-0006	DDX59	SNP	Splice_site	1	200633212	G	C	46	52
BRCA	BR-0006	VN1R5	SNP	Missense	1	247420223	G	T	41	48
BRCA	BR-0006	MLLT10	SNP	Splice_site	10	22016857	G	T	39	91
BRCA	BR-0006	MTPAP	INS	De_novo_Start_OutOfFrame	10	30638207	-	A	28	50
BRCA	BR-0006	MCAM	SNP	Synonymous	11	119182252	G	A	40	43
BRCA	BR-0006	DUSP16	SNP	Missense	12	12673994	C	A	32	65
BRCA	BR-0006	ZNF605	SNP	Nonsense	12	133502255	G	A	45	53
BRCA	BR-0006	NRIP2	SNP	Missense	12	2939957	G	A	39	41
BRCA	BR-0006	C12orf26	SNP	Missense	12	82832548	G	C	33	85
BRCA	BR-0006	C14orf37	SNP	Missense	14	58605827	T	G	60	50
BRCA	BR-0006	COQ7	SNP	Missense	16	19088649	G	A	45	95
BRCA	BR-0006	FAM86A	SNP	Missense	16	5140136	C	T	27	72
BRCA	BR-0006	TEX14	SNP	Missense	17	56729307	C	T	32	52
BRCA	BR-0006	SDK2	SNP	Missense	17	71391413	C	T	23	95
BRCA	BR-0006	ZNF415	SNP	Missense	19	53612291	G	A	42	49
BRCA	BR-0006	ZNF415	SNP	Missense	19	53612514	G	A	45	61
BRCA	BR-0006	ZNF415	SNP	Missense	19	53612535	G	C	45	56
BRCA	BR-0006	ZNF415	SNP	Synonymous	19	53612689	G	A	45	42
BRCA	BR-0006	ZNF415	SNP	Missense	19	53612750	G	A	33	54
BRCA	BR-0006	NLRP11	SNP	De_novo_Start_OutOfFrame	19	56348081	G	A	40	51
BRCA	BR-0006	RAPH1	SNP	Missense	2	204304926	G	A	37	87
BRCA	BR-0006	COL6A3	SNP	Missense	2	238289891	C	T	26	54
BRCA	BR-0006	MRPS5	SNP	Splice_Site_SNP	2	95767421	C	T	20	84
BRCA	BR-0006	HUWE1	SNP	Missense	23	53579343	C	T	30	63
BRCA	BR-0006	SI	SNP	Missense	3	164785170	G	T	47	89
BRCA	BR-0006	MUC4	SNP	Missense	3	195511208	T	G	59	39
BRCA	BR-0006	TRNT1	SNP	Synonymous	3	3170862	G	A	33	53
BRCA	BR-0006	KIAA1109	SNP	Missense	4	123176349	C	T	32	79
BRCA	BR-0006	SCLT1	SNP	Missense	4	129867300	C	T	19	44
BRCA	BR-0006	BOD1L	SNP	Nonsense	4	13589337	G	C	45	65
BRCA	BR-0006	BOD1L	SNP	Missense	4	13590372	G	C	45	51
BRCA	BR-0006	TADA2B	SNP	Missense	4	7056746	A	C	6	76
BRCA	BR-0006	SPEF2	SNP	Missense	5	35654704	C	T	29	78
BRCA	BR-0006	ZDHHC11	SNP	Missense	5	843766	C	T	19	50
BRCA	BR-0006	C6orf170	SNP	Missense	6	121624852	G	C	45	80
BRCA	BR-0006	CTTNBP2	SNP	Missense	7	117375380	C	T	30	86
BRCA	BR-0006	MAGI2	SNP	Missense	7	77885292	C	A	30	100
BRCA	BR-0006	KIAA0649	SNP	Missense	9	138377526	G	C	33	47
BRCA	BR-0007	SH3BP5L	SNP	Missense_Mutation	1	249106422	G	A	37	55
BRCA	BR-0007	CNKSR1	SNP	Missense_Mutation	1	26515296	G	A	39	40
BRCA	BR-0007	TRIM8	SNP	Silent	10	104417102	G	A	45	83
BRCA	BR-0007	OR10Q1	SNP	Silent	11	57995595	G	A	39	38
BRCA	BR-0007	DDX47	SNP	Missense_Mutation	12	12975628	C	T	31	60
BRCA	BR-0007	KRT83	SNP	Silent	12	52711516	G	A	40	50
BRCA	BR-0007	FLT1	SNP	Nonsense_Mutation	13	28886147	G	A	45	100
BRCA	BR-0007	TP53	SNP	Nonsense_Mutation	17	7578382	G	C	45	58
BRCA	BR-0007	TP53	SNP	Missense_Mutation	17	7579476	G	C	41	50
BRCA	BR-0007	PRAME	SNP	Missense_Mutation	22	22892602	C	T	32	50
BRCA	BR-0007	ATP2B3	SNP	Missense_Mutation	23	152845595	G	A	37	81
BRCA	BR-0007	HSD17B13	SNP	Missense_Mutation	4	88236675	T	G	59	66
BRCA	BR-0007	PKHD1	SNP	Missense_Mutation	6	51892978	T	C	52	64
BRCA	BR-0007	DNAH11	SNP	Missense_Mutation	7	21723418	C	T	28	87
BRCA	BR-0007	PKD1L1	SNP	Missense_Mutation	7	47933497	C	T	29	85
BRCA	BR-0007	PON1	SNP	Missense_Mutation	7	94935641	G	A	45	72
BRCA	BR-0007	CYP11B2	SNP	Silent	8	143999032	C	T	21	53
BRCA	BR-0008	RASAL2	SNP	Nonsense_Mutation	1	178427431	C	T	19	61
BRCA	BR-0008	C1orf107	SNP	Missense_Mutation	1	210006574	G	A	33	56
BRCA	BR-0008	CAPN9	SNP	Missense_Mutation	1	230898462	C	T	23	72
BRCA	BR-0008	GPR157	SNP	Missense_Mutation	1	9165652	G	A	34	72
BRCA	BR-0008	CUBN	SNP	Missense_Mutation	10	16882983	C	T	25	70
BRCA	BR-0008	RBP4	SNP	Missense_Mutation	10	95360718	C	G	31	72
BRCA	BR-0008	INTS5	SNP	Silent	11	62415827	C	T	25	53
BRCA	BR-0008	ACVR1B	SNP	Missense_Mutation	12	52369198	C	T	26	85
BRCA	BR-0008	LOC100240734	SNP	Missense	12	54496070	G	T	42	50
BRCA	BR-0008	EPYC	SNP	Nonsense	12	91365699	G	A	37	68
BRCA	BR-0008	AHNAK2	SNP	Synonymous	14	105411957	G	A	40	51
BRCA	BR-0008	IPO4	SNP	Missense_Mutation	14	24652006	C	G	29	75
BRCA	BR-0008	PPP2R5E	SNP	Missense_Mutation	14	63858701	G	C	36	83
BRCA	BR-0008	ZNF205	SNP	Missense_Mutation	16	3169737	C	T	19	80
BRCA	BR-0008	DNAH9	SNP	Missense	17	11738175	C	T	25	83
BRCA	BR-0008	TUSC5	SNP	Nonsense	17	1201547	C	T	29	57
BRCA	BR-0008	CRLF3	SNP	Nonsense_Mutation	17	29112961	G	A	45	63
BRCA	BR-0008	TP53	SNP	Missense_Mutation	17	7577085	C	T	32	80
BRCA	BR-0008	CTAGE1	SNP	Nonsense	18	19996850	G	A	45	56
BRCA	BR-0008	CYP4F12	SNP	Nonsense_Mutation	19	15784450	G	A	41	55
BRCA	BR-0008	ZNF317	SNP	Splice_Site_SNP	19	9266600	G	A	33	66
BRCA	BR-0008	ZNF317	SNP	Missense_Mutation	19	9268043	G	A	41	69
BRCA	BR-0008	ABCB11	SNP	Silent	2	169814522	G	A	40	52
BRCA	BR-0008	TTN	SNP	Missense_Mutation	2	179594483	G	T	33	76
BRCA	BR-0008	DGKD	SNP	Missense_Mutation	2	234357915	C	T	29	76
BRCA	BR-0008	OR6B3	SNP	Synonymous	2	240984887	A	G	9	47
BRCA	BR-0008	C20orf186	SNP	Nonsense_Mutation	20	31673924	C	T	27	49
BRCA	BR-0008	SLC5A3	SNP	Missense_Mutation	21	35468952	G	C	45	70
BRCA	BR-0008	TTC28	SNP	Missense	22	28692209	C	T	27	98
BRCA	BR-0008	WDR13	INS	Frame_Shift_Ins	23	48457759	-	G	31	63
BRCA	BR-0008	WNK3	SNP	Missense_Mutation	23	54275888	C	G	32	77
BRCA	BR-0008	SH3PXD2B	SNP	Missense_Mutation	5	171785803	T	A	50	85
BRCA	BR-0008	RASA1	INS	Frame_Shift_Ins	5	86564697	-	C	46	56
BRCA	BR-0008	LNPEP	SNP	Silent	5	96315176	C	T	31	48
BRCA	BR-0008	AGAP3	SNP	Missense_Mutation	7	150815383	G	C	45	93
BRCA	BR-0008	ANXA13	SNP	Nonsense_Mutation	8	124707946	T	A	61	62
BRCA	BR-0008	RHPN1	SNP	Missense_Mutation	8	144464682	C	T	25	39
BRCA	BR-0008	WHSC1L1	SNP	Missense_Mutation	8	38184356	C	T	32	87
BRCA	BR-0008	BRD3	SNP	Synonymous	9	136905224	C	A	27	43
BRCA	BR-0008	LHX3	SNP	Missense_Mutation	9	139091539	T	C	60	62
BRCA	BR-0008	PNPLA7	SNP	Silent	9	140414394	C	T	27	44
BRCA	BR-0009	HAO2	SNP	Missense_Mutation	1	119925610	G	T	33	55
BRCA	BR-0009	PDE4DIP	SNP	Splice_Site_SNP	1	145017906	G	A	46	57
BRCA	BR-0009	KIRREL	SNP	Missense	1	158061235	T	A	50	87
BRCA	BR-0009	C1orf95	SNP	Silent	1	226784570	C	T	28	73
BRCA	BR-0009	LOXL4	SNP	Missense_Mutation	10	100013406	C	T	27	96
BRCA	BR-0009	DNMBP	SNP	Silent	10	101643817	C	T	32	48
BRCA	BR-0009	PDCD11	SNP	Silent	10	105187125	C	T	30	52
BRCA	BR-0009	DMBT1	SNP	Missense_Mutation	10	124339172	G	T	42	67
BRCA	BR-0009	OPN4	SNP	Missense_Mutation	10	88422014	C	A	26	99
BRCA	BR-0009	OR10G9	SNP	Missense	11	123893973	C	T	30	51
BRCA	BR-0009	DGKZ	SNP	Missense_Mutation	11	46397143	G	C	33	82
BRCA	BR-0009	PRG3	SNP	Missense_Mutation	11	57145237	C	A	21	24
BRCA	BR-0009	TRPT1	SNP	Missense_Mutation	11	63992129	G	T	47	88
BRCA	BR-0009	DKFZp761E198	SNP	Missense_Mutation	11	65546210	C	A	23	50
BRCA	BR-0009	CD248	SNP	Silent	11	66083472	G	A	34	80
BRCA	BR-0009	GDPD4	SNP	Missense_Mutation	11	76956331	G	A	48	77
BRCA	BR-0009	TFCP2	SNP	Nonsense	12	51501051	G	A	45	98
BRCA	BR-0009	COL4A2	SNP	Missense_Mutation	13	111117908	G	T	35	86
BRCA	BR-0009	GMPR2	SNP	Missense_Mutation	14	24707681	G	T	44	52
BRCA	BR-0009	ARHGAP5	SNP	Missense_Mutation	14	32563140	G	C	33	87
BRCA	BR-0009	SIX4	SNP	Missense_Mutation	14	61186651	T	G	63	74
BRCA	BR-0009	FEM1B	SNP	Missense_Mutation	15	68583185	C	G	30	85
BRCA	BR-0009	CHD2	SNP	Silent	15	93543795	G	A	42	70
BRCA	BR-0009	CIITA	SNP	Missense_Mutation	16	11002933	A	G	8	49
BRCA	BR-0009	CHD9	SNP	Missense_Mutation	16	53330929	G	C	45	99
BRCA	BR-0009	WFIKKN1	DEL	Frame_Shift_Del	16	682650	C	-	30	58
BRCA	BR-0009	CDRT1	SNP	Missense	17	15522759	A	T	12	65
BRCA	BR-0009	MIDN	SNP	Silent	19	1255482	C	A	30	53
BRCA	BR-0009	ZNF571	SNP	Missense	19	38057002	C	T	17	52
BRCA	BR-0009	RSPH6A	SNP	Missense_Mutation	19	46307617	C	T	21	69
BRCA	BR-0009	ZNF836	SNP	Splice_site	19	52658128	T	A	52	67
BRCA	BR-0009	TFPT	SNP	Missense_Mutation	19	54617909	C	G	24	68
BRCA	BR-0009	LILRB5	INS	Frame_Shift_Ins	19	54754838	-	G	59	46
BRCA	BR-0009	HSPBP1	SNP	Missense_Mutation	19	55790841	G	C	47	81
BRCA	BR-0009	HNRNPM	SNP	Silent	19	8536244	A	G	7	48
BRCA	BR-0009	XIRP2	SNP	Missense_Mutation	2	168104558	C	A	17	50
BRCA	BR-0009	IQCA1	INS	Frame_Shift_Ins	2	237253214	-	A	63	58
BRCA	BR-0009	SUCLG1	SNP	Missense	2	84652608	G	C	33	49
BRCA	BR-0009	MRPL30	SNP	Missense_Mutation	2	99812076	G	C	41	76
BRCA	BR-0009	PLCB1	SNP	Missense_Mutation	20	8630047	G	A	39	84
BRCA	BR-0009	DONSON	SNP	Missense_Mutation	21	34957003	C	A	17	45
BRCA	BR-0009	AIRE	DEL	Frame_Shift_Del	21	45712987	G	-	46	41
BRCA	BR-0009	RIMBP3	SNP	Missense_Mutation	22	20458543	G	A	38	55
BRCA	BR-0009	GPRASP1	SNP	Missense_Mutation	23	101912253	G	A	45	63
BRCA	BR-0009	WDR44	SNP	Missense_Mutation	23	117543513	A	G	10	89
BRCA	BR-0009	MOSPD2	SNP	Splice_site	23	14927105	C	T	20	88
BRCA	BR-0009	MAMLD1	SNP	Synonymous	23	149681301	C	A	22	52
BRCA	BR-0009	DMD	SNP	Missense_Mutation	23	31140024	G	T	47	95
BRCA	BR-0009	DZIP3	SNP	Silent	3	108388549	T	G	53	71
BRCA	BR-0009	CCDC39	SNP	Synonymous	3	180397154	G	A	41	56
BRCA	BR-0009	ATP13A5	SNP	Missense_Mutation	3	193039557	T	A	50	52
BRCA	BR-0009	KCNH8	SNP	Silent	3	19479765	G	C	45	52
BRCA	BR-0009	ITIH3	SNP	Synonymous	3	52830634	C	A	21	53
BRCA	BR-0009	ST3GAL6	SNP	Missense	3	98489779	C	G	21	79
BRCA	BR-0009	TCOF1	SNP	Missense_Mutation	5	149743797	G	C	34	58
BRCA	BR-0009	C5orf47	SNP	Missense	5	173425222	T	A	49	58
BRCA	BR-0009	KIF2A	SNP	Nonsense	5	61649170	C	T	25	95
BRCA	BR-0009	LNPEP	SNP	Missense_Mutation	5	96358157	G	C	45	55
BRCA	BR-0009	PSORS1C1	SNP	Splice_site	6	31106207	A	C	10	46
BRCA	BR-0009	NOTCH4	SNP	Missense_Mutation	6	32164115	C	T	25	75
BRCA	BR-0009	COL11A2	SNP	Silent	6	33141155	C	G	25	49
BRCA	BR-0009	GPR63	SNP	Missense_Mutation	6	97246851	T	A	51	50
BRCA	BR-0009	ZAN	SNP	Silent	7	100344177	C	G	30	54
BRCA	BR-0009	ZC3HC1	SNP	Missense_Mutation	7	129666086	C	A	29	86
BRCA	BR-0009	FERD3L	SNP	Missense_Mutation	7	19184937	C	T	19	80
BRCA	BR-0009	MACC1	SNP	Missense_Mutation	7	20198632	T	G	62	70
BRCA	BR-0009	BLK	SNP	Missense	8	11418633	C	G	32	63
BRCA	BR-0009	GPR172A	SNP	Missense_Mutation	8	145583444	C	G	32	53
BRCA	BR-0009	NAT1	SNP	Missense_Mutation	8	18080030	C	G	32	48
BRCA	BR-0009	PLEKHA2	SNP	Missense_Mutation	8	38803686	C	A	29	66
BRCA	BR-0009	C9orf50	SNP	Silent	9	132382030	G	A	41	49
BRCA	BR-0009	SARDH	SNP	Missense_Mutation	9	136532038	T	G	59	37
BRCA	BR-0010	FAM58B	SNP	Missense	1	200182899	G	A	38	55
BRCA	BR-0010	NLRP3	SNP	Synonymous	1	247588380	C	T	19	49
BRCA	BR-0010	CCDC82	SNP	Missense	11	96117518	G	C	45	60
BRCA	BR-0010	SMG6	SNP	Missense	17	2075992	G	A	42	76
BRCA	BR-0010	MLLT6	SNP	Nonsense	17	36872670	C	T	25	73
BRCA	BR-0010	TUBD1	SNP	Missense	17	57955634	G	A	42	97
BRCA	BR-0010	GRB14	SNP	Missense	2	165365281	C	T	28	96
BRCA	BR-0010	SLC12A5	SNP	Missense	20	44682328	G	A	41	78
BRCA	BR-0010	SELK	SNP	Missense	3	53920922	T	G	62	65
BRCA	BR-0010	EGFR	SNP	Synonymous	7	55266531	C	T	31	47
BRCA	BR-0010	NOTCH1	SNP	Missense	9	139391715	C	T	27	99
BRCA	BR-0011	CTSE	SNP	Silent	1	206325405	G	C	47	67
BRCA	BR-0011	KIAA0562	SNP	Missense_Mutation	1	3747781	C	A	21	61
BRCA	BR-0011	TMTC2	SNP	Splice_site	12	83250789	C	T	26	64
BRCA	BR-0011	YLPM1	SNP	Nonsense_Mutation	14	75269347	C	T	25	83
BRCA	BR-0011	CDH13	SNP	Silent	16	83520170	G	A	38	45
BRCA	BR-0011	DBF4B	SNP	Missense_Mutation	17	42828442	C	T	31	52
BRCA	BR-0011	METTL2A	SNP	Missense_Mutation	17	60518021	A	G	6	88
BRCA	BR-0011	APOH	SNP	Silent	17	64210608	A	G	14	50
BRCA	BR-0011	SALL3	SNP	Silent	18	76753554	C	T	23	11
BRCA	BR-0011	GRIN3B	SNP	Missense_Mutation	19	1008916	G	A	42	51
BRCA	BR-0011	RYR1	SNP	Missense_Mutation	19	38976259	G	A	38	72
BRCA	BR-0011	PRPF31	SNP	Missense_Mutation	19	54632661	G	C	34	63
BRCA	BR-0011	CD320	SNP	Missense_Mutation	19	8369998	C	T	27	59
BRCA	BR-0011	TRIP12	SNP	Missense_Mutation	2	230638875	C	T	31	99
BRCA	BR-0011	MPHOSPH10	SNP	Missense_Mutation	2	71357803	C	T	23	54
BRCA	BR-0011	LSS	SNP	Missense_Mutation	21	47647541	T	A	58	50
BRCA	BR-0011	BHLHB9	SNP	Missense_Mutation	23	102004004	G	T	33	53
BRCA	BR-0011	MLL3	SNP	Nonsense_Mutation	7	151874514	A	C	13	91
BRCA	BR-0011	CRHR2	SNP	Silent	7	30705172	G	A	39	42
BRCA	BR-0011	XKR6	SNP	Missense_Mutation	8	10755506	C	T	23	80
BRCA	BR-0011	HTRA4	SNP	Missense_Mutation	8	38835643	G	A	40	70
BRCA	BR-0011	GNE	SNP	Missense_Mutation	9	36217489	T	C	58	73
BRCA	BR-0012	VANGL1	SNP	Missense_Mutation	1	116227966	G	A	45	97
BRCA	BR-0012	LMX1A	SNP	Missense_Mutation	1	165182988	C	T	29	87
BRCA	BR-0012	MUC5B	DNP	Missense_Mutation	11	1269782	TC	AA	50	42
BRCA	BR-0012	RARRES3	SNP	Splice_site	11	63313730	G	C	34	68
BRCA	BR-0012	NEUROD4	SNP	Silent	12	55420940	C	T	26	52
BRCA	BR-0012	BEST3	SNP	Missense_Mutation	12	70049312	G	A	40	48
BRCA	BR-0012	TLN2	SNP	Missense_Mutation	15	63102181	G	A	39	78
BRCA	BR-0012	ITGA11	SNP	Splice_site	15	68609701	C	G	30	85
BRCA	BR-0012	ZNF200	SNP	Missense_Mutation	16	3274589	C	A	18	49
BRCA	BR-0012	TOP3A	SNP	Missense_Mutation	17	18196080	G	A	47	57
BRCA	BR-0012	GH1	SNP	Missense_Mutation	17	61994713	G	A	38	52
BRCA	BR-0012	TP53	SNP	Missense_Mutation	17	7578203	C	T	17	96
BRCA	BR-0012	ZNF579	SNP	Missense_Mutation	19	56089367	C	G	32	67
BRCA	BR-0012	FBN3	SNP	Silent	19	8197953	G	A	40	45
BRCA	BR-0012	GRB14	SNP	Missense_Mutation	2	165476222	G	A	43	81
BRCA	BR-0012	ZDBF2	SNP	Missense_Mutation	2	207174317	C	G	32	48
BRCA	BR-0012	C20orf79	SNP	Missense_Mutation	20	18794833	C	T	23	83
BRCA	BR-0012	ZFP64	SNP	Missense_Mutation	20	50701686	G	A	39	83
BRCA	BR-0012	SEPT6	SNP	Missense_Mutation	23	118784013	C	T	29	93
BRCA	BR-0012	KIAA0226	SNP	Nonsense_Mutation	3	197422826	C	A	30	87
BRCA	BR-0012	PLG	SNP	Silent	6	161139758	C	T	19	50
BRCA	BR-0012	RNF39	SNP	Silent	6	30043414	C	T	31	49
BRCA	BR-0012	MDN1	SNP	Missense_Mutation	6	90503569	C	T	30	96
BRCA	BR-0012	ROR2	SNP	Missense_Mutation	9	94499726	G	A	44	79
BRCA	BR-0013	C1orf55	SNP	Silent	1	226180103	G	C	45	60
BRCA	BR-0013	ARID4B	SNP	Missense_Mutation	1	235345485	G	C	45	73
BRCA	BR-0013	RNF214	SNP	Missense_Mutation	11	117152044	C	T	17	82
BRCA	BR-0013	CAPRIN1	SNP	Missense_Mutation	11	34118810	C	G	29	63
BRCA	BR-0013	CAMKK2	SNP	Silent	12	121712165	G	A	45	52
BRCA	BR-0013	CACNA1C	SNP	Missense_Mutation	12	2763037	T	C	60	90
BRCA	BR-0013	ARID4A	SNP	Silent	14	58818024	A	G	3	54
BRCA	BR-0013	GABRG3	SNP	Missense_Mutation	15	27765252	C	A	26	99
BRCA	BR-0013	EDC4	SNP	Missense_Mutation	16	67914102	C	A	30	48
BRCA	BR-0013	GRIN2A	SNP	Missense_Mutation	16	9857885	C	A	25	62
BRCA	BR-0013	TAF15	SNP	Missense_Mutation	17	34171801	G	T	35	69
BRCA	BR-0013	TAF15	DNP	Missense_Mutation	17	34171886	GG	TT	39	71
BRCA	BR-0013	C17orf71	SNP	Silent	17	57288879	G	A	47	69
BRCA	BR-0013	TULP2	SNP	Missense_Mutation	19	49391511	T	A	58	73
BRCA	BR-0013	HSPBP1	SNP	Missense_Mutation	19	55785814	G	T	39	60
BRCA	BR-0013	GPR155	SNP	Silent	2	175337881	G	A	45	59
BRCA	BR-0013	SPEG	SNP	Missense_Mutation	2	220336955	T	C	58	71
BRCA	BR-0013	SRPK3	SNP	Missense_Mutation	23	153049530	G	C	38	53
BRCA	BR-0013	STXBP5L	SNP	Missense_Mutation	3	120998705	C	T	17	77
BRCA	BR-0013	GPR98	SNP	Missense_Mutation	5	89990293	G	T	47	100
BRCA	BR-0013	MLL3	SNP	Silent	7	151846058	G	A	37	12
BRCA	BR-0013	NPC1L1	SNP	Missense_Mutation	7	44579311	C	T	19	50
BRCA	BR-0013	C8orf58	SNP	Missense_Mutation	8	22458565	G	C	36	52
BRCA	BR-0013	RGS20	SNP	Missense_Mutation	8	54764557	G	T	33	50
BRCA	BR-0014	TAS1R3	SNP	Missense_Mutation	1	1268388	G	T	37	58
BRCA	BR-0014	PRPF3	SNP	Missense_Mutation	1	150307556	C	G	29	67
BRCA	BR-0014	GON4L	SNP	Missense_Mutation	1	155783447	G	A	47	70
BRCA	BR-0014	CNTN2	SNP	Missense_Mutation	1	205034337	G	A	37	94
BRCA	BR-0014	TRAF3IP3	SNP	Missense_Mutation	1	209949007	G	A	41	60
BRCA	BR-0014	KCTD3	SNP	Missense_Mutation	1	215777537	T	C	57	93
BRCA	BR-0014	OBSCN	SNP	Missense_Mutation	1	228547468	C	A	25	38
BRCA	BR-0014	PCNXL2	SNP	Missense_Mutation	1	233136220	G	A	41	69
BRCA	BR-0014	EIF4G2	SNP	Silent	11	10824788	T	C	52	59
BRCA	BR-0014	HSPA8	SNP	Missense_Mutation	11	122929394	C	T	25	97
BRCA	BR-0014	NUP98	SNP	Missense_Mutation	11	3716733	G	C	36	59
BRCA	BR-0014	OR51T1	SNP	Silent	11	4904056	C	G	30	56
BRCA	BR-0014	B3GAT3	SNP	Missense_Mutation	11	62384115	C	T	19	74
BRCA	BR-0014	ODZ4	SNP	Missense_Mutation	11	78412998	C	T	31	100
BRCA	BR-0014	LRCH1	SNP	Silent	13	47303065	C	G	29	57
BRCA	BR-0014	SLC15A1	SNP	Missense_Mutation	13	99337165	G	T	42	82
BRCA	BR-0014	EIF5	SNP	Missense_Mutation	14	103803508	G	C	37	86
BRCA	BR-0014	CDKL1	SNP	Missense_Mutation	14	50862503	C	A	32	82
BRCA	BR-0014	HS3ST3A1	SNP	Missense_Mutation	17	13399585	G	A	38	86
BRCA	BR-0014	STAT3	SNP	Missense_Mutation	17	40475143	G	C	45	71
BRCA	BR-0014	TP53	SNP	Nonsense_Mutation	17	7578257	C	A	30	96
BRCA	BR-0014	NEDD4L	SNP	Silent	18	55983243	C	T	19	64
BRCA	BR-0014	ZNF544	SNP	Missense_Mutation	19	58774064	C	T	23	42
BRCA	BR-0014	DNAH6	SNP	Missense_Mutation	2	84806719	T	A	51	55
BRCA	BR-0014	PYGB	SNP	Missense_Mutation	20	25252057	G	A	34	95
BRCA	BR-0014	APCDD1L	SNP	Missense_Mutation	20	57036355	C	T	27	67
BRCA	BR-0014	GAB4	SNP	Silent	22	17468870	G	A	42	67
BRCA	BR-0014	MAPK1	SNP	Missense_Mutation	22	22160188	C	A	19	99
BRCA	BR-0014	PIWIL3	SNP	Missense_Mutation	22	25151775	C	T	27	61
BRCA	BR-0014	KREMEN1	SNP	Missense_Mutation	22	29533437	C	T	23	92
BRCA	BR-0014	NOX1	SNP	Missense_Mutation	23	100103695	C	A	24	90
BRCA	BR-0014	IRS4	SNP	Missense_Mutation	23	107977128	C	T	23	39
BRCA	BR-0014	ARSF	SNP	Silent	23	3030282	T	C	51	49
BRCA	BR-0014	DMD	SNP	Silent	23	31462649	C	T	19	48
BRCA	BR-0014	FOXP3	SNP	Missense_Mutation	23	49108022	G	A	40	51
BRCA	BR-0014	STARD8	SNP	Silent	23	67939226	G	A	34	50
BRCA	BR-0014	HDX	SNP	Silent	23	83616549	G	A	47	30
BRCA	BR-0014	BOC	SNP	Missense_Mutation	3	112969714	C	T	27	57
BRCA	BR-0014	TTC21A	SNP	Silent	3	39178393	C	T	17	57
BRCA	BR-0014	CLNK	SNP	Missense_Mutation	4	10566368	G	C	43	62
BRCA	BR-0014	C4orf41	SNP	Missense_Mutation	4	184585201	G	C	45	100
BRCA	BR-0014	KIT	SNP	Silent	4	55597497	C	T	27	44
BRCA	BR-0014	SPARCL1	SNP	Silent	4	88416274	A	G	8	53
BRCA	BR-0014	CEP120	SNP	Silent	5	122708383	G	A	41	42
BRCA	BR-0014	PCDHAC1	SNP	Missense_Mutation	5	140307691	G	T	39	80
BRCA	BR-0014	SERINC5	SNP	Missense_Mutation	5	79498793	C	T	27	100
BRCA	BR-0014	REV3L	SNP	Missense_Mutation	6	111670433	G	C	45	50
BRCA	BR-0014	FNDC1	SNP	Splice_site	6	159646752	C	G	32	99
BRCA	BR-0014	BTN3A1	SNP	Silent	6	26408164	C	T	21	44
BRCA	BR-0014	FLNC	SNP	Silent	7	128475507	G	A	38	6
BRCA	BR-0014	TNPO3	SNP	Missense_Mutation	7	128612584	T	C	49	76
BRCA	BR-0014	PARP12	SNP	Missense_Mutation	7	139724424	G	C	41	47
BRCA	BR-0014	PDE1C	SNP	Silent	7	31876799	T	G	55	58
BRCA	BR-0014	EGFR	SNP	Missense_Mutation	7	55249058	G	C	40	86
BRCA	BR-0014	SNX31	SNP	Splice_site	8	101586094	C	A	29	77
BRCA	BR-0014	OXR1	SNP	Missense_Mutation	8	107715221	T	C	55	92
BRCA	BR-0014	IER5L	SNP	Missense_Mutation	9	131940291	G	A	41	77
BRCA	BR-0014	TRPM3	SNP	Missense_Mutation	9	73206061	C	T	27	98
BRCA	BR-0015	C10orf93	SNP	Missense_Mutation	10	134743221	C	G	32	47
BRCA	BR-0015	PFKFB3	SNP	Missense_Mutation	10	6268302	G	C	41	72
BRCA	BR-0015	CES2	SNP	Silent	16	66974520	C	T	32	50
BRCA	BR-0015	TP53	SNP	Missense_Mutation	17	7577124	C	T	18	81
BRCA	BR-0015	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	BR-0015	LOX	SNP	Missense_Mutation	5	121413616	G	A	42	60
BRCA	BR-0015	DDO	SNP	Silent	6	110714134	G	A	41	43
BRCA	BR-0015	DLX6	SNP	Silent	7	96639161	G	A	35	56
BRCA	BR-0016	B4GALNT4	SNP	Missense_Mutation	11	375699	T	G	59	52
BRCA	BR-0016	INF2	SNP	Splice_site	14	105246551	C	T	30	95
BRCA	BR-0016	ADAMTSL3	SNP	Missense_Mutation	15	84694100	C	T	32	61
BRCA	BR-0016	SYNM	SNP	Missense_Mutation	15	99669901	C	G	22	56
BRCA	BR-0016	SLC38A8	SNP	Missense_Mutation	16	84067024	C	T	27	48
BRCA	BR-0016	CPD	SNP	Missense_Mutation	17	28782390	T	G	52	87
BRCA	BR-0016	HIPK4	SNP	Silent	19	40886680	A	G	6	39
BRCA	BR-0016	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	BR-0016	ANKMY1	SNP	Missense_Mutation	2	241468721	G	A	40	37
BRCA	BR-0016	ASB11	SNP	Silent	23	15306051	G	A	33	73
BRCA	BR-0016	TMEM89	SNP	Missense_Mutation	3	48658918	C	T	27	62
BRCA	BR-0016	HIST1H3B	SNP	Missense_Mutation	6	26031895	G	A	37	98
BRCA	BR-0016	FLNC	SNP	Silent	7	128492712	C	T	23	17
BRCA	BR-0016	MLL3	SNP	Nonsense_Mutation	7	151878287	G	A	45	98
BRCA	BR-0016	PUF60	SNP	Nonsense_Mutation	8	144900689	G	A	46	97
BRCA	BR-0017	AIM2	SNP	Missense_Mutation	1	159033307	T	A	55	67
BRCA	BR-0017	RPS6KC1	SNP	Missense_Mutation	1	213445967	T	A	55	83
BRCA	BR-0017	HEATR1	SNP	Missense_Mutation	1	236730086	C	T	19	98
BRCA	BR-0017	KDM4A	SNP	Silent	1	44169771	C	G	29	60
BRCA	BR-0017	GRIP1	SNP	Missense_Mutation	12	66814566	G	C	47	81
BRCA	BR-0017	INF2	SNP	Splice_site	14	105246551	C	T	30	95
BRCA	BR-0017	RHCG	SNP	Missense_Mutation	15	90021181	C	T	27	89
BRCA	BR-0017	MAPK8IP3	SNP	Missense_Mutation	16	1793344	G	A	38	98
BRCA	BR-0017	PAF1	SNP	Missense_Mutation	19	39877419	C	T	23	97
BRCA	BR-0017	SLC4A10	SNP	Missense_Mutation	2	162735785	C	T	22	100
BRCA	BR-0017	COL20A1	SNP	Missense_Mutation	20	61938856	C	T	23	60
BRCA	BR-0017	KRTAP27-1	SNP	Missense_Mutation	21	31709578	T	C	63	39
BRCA	BR-0017	ARHGEF9	SNP	Missense_Mutation	23	62898266	G	T	41	94
BRCA	BR-0017	KIAA1407	SNP	Missense_Mutation	3	113750490	A	T	1	60
BRCA	BR-0017	C3orf59	SNP	Silent	3	192635612	G	A	47	59
BRCA	BR-0017	ROBO1	SNP	Silent	3	78763650	G	C	35	57
BRCA	BR-0017	GDF9	SNP	Missense_Mutation	5	132197894	T	C	52	56
BRCA	BR-0017	POLK	SNP	Splice_Site	5	74889875	G	T	44	100
BRCA	BR-0017	KRBA1	SNP	Splice_site	7	149426279	G	T	41	69
BRCA	BR-0017	CNTLN	SNP	Missense_Mutation	9	17236495	G	A	38	60
BRCA	BR-0017	PCSK5	SNP	Missense_Mutation	9	78773999	C	T	27	100
BRCA	BR-0018	C1orf114	SNP	Missense_Mutation	1	169390893	G	A	33	55
BRCA	BR-0018	RAB4A	SNP	Silent	1	229433283	G	A	37	53
BRCA	BR-0018	OCA2	SNP	Missense_Mutation	15	28200333	C	T	30	89
BRCA	BR-0018	C15orf55	SNP	Missense_Mutation	15	34649678	C	T	19	56
BRCA	BR-0018	ZSWIM2	SNP	Silent	2	187703805	G	A	40	30
BRCA	BR-0018	HK2	SNP	Missense_Mutation	2	75107474	G	A	47	81
BRCA	BR-0018	AHCY	SNP	Missense_Mutation	20	32873409	C	T	27	70
BRCA	BR-0018	UROC1	SNP	Missense_Mutation	3	126219638	G	T	43	75
BRCA	BR-0018	FEZF2	SNP	Missense_Mutation	3	62355829	G	A	38	58
BRCA	BR-0018	TMEM66	SNP	Missense_Mutation	8	29927265	T	G	55	53
BRCA	BR-0019	TTF2	SNP	Missense_Mutation	1	117634014	A	T	13	51
BRCA	BR-0019	HSPG2	SNP	Missense_Mutation	1	22203039	C	T	27	75
BRCA	BR-0019	OBSCN	SNP	Silent	1	228528251	C	G	22	39
BRCA	BR-0019	ARHGAP21	SNP	Missense_Mutation	10	24889580	C	T	31	90
BRCA	BR-0019	UBE4A	SNP	Nonsense_Mutation	11	118261379	G	T	41	100
BRCA	BR-0019	OR5AK2	SNP	Missense_Mutation	11	56756816	G	A	40	55
BRCA	BR-0019	ORAOV1	SNP	Splice_site	11	69482778	C	G	32	56
BRCA	BR-0019	ARHGAP5	SNP	Missense_Mutation	14	32560696	A	G	12	92
BRCA	BR-0019	RNMT	SNP	Nonsense_Mutation	18	13734469	G	T	41	67
BRCA	BR-0019	ALPK2	SNP	Silent	18	56204173	G	A	41	47
BRCA	BR-0019	ZNF99	SNP	Missense_Mutation	19	22952070	G	C	42	57
BRCA	BR-0019	SLC7A10	SNP	Missense_Mutation	19	33702036	C	T	23	48
BRCA	BR-0019	SIGLEC10	SNP	Missense_Mutation	19	51918546	G	A	43	53
BRCA	BR-0019	PROKR1	SNP	Missense_Mutation	2	68882371	C	T	19	94
BRCA	BR-0019	ELMO2	SNP	Missense_Mutation	20	45023106	C	T	32	96
BRCA	BR-0019	HDAC10	SNP	Splice_site	22	50684728	A	G	6	47
BRCA	BR-0019	NISCH	SNP	Missense_Mutation	3	52522504	A	T	2	50
BRCA	BR-0019	LHFPL4	SNP	Missense_Mutation	3	9547657	T	C	62	71
BRCA	BR-0019	C5orf42	SNP	Missense_Mutation	5	37138831	C	A	26	48
BRCA	BR-0019	WDYHV1	SNP	Missense_Mutation	8	124453646	A	C	1	47
BRCA	BR-0019	GDAP1	SNP	Silent	8	75262732	G	C	38	67
BRCA	BR-0019	DOLK	SNP	Missense_Mutation	9	131708846	A	G	10	61
BRCA	BR-0020	PEF1	SNP	Missense_Mutation	1	32098213	G	A	39	77
BRCA	BR-0020	ADPRHL2	SNP	Missense_Mutation	1	36558815	A	T	16	78
BRCA	BR-0020	ATP8A2	SNP	Silent	13	26163819	G	A	45	65
BRCA	BR-0020	ADAMTS7	SNP	Missense_Mutation	15	79058988	C	T	26	70
BRCA	BR-0020	AFG3L2	SNP	Missense_Mutation	18	12363840	C	T	20	100
BRCA	BR-0020	MAP2	SNP	Missense_Mutation	2	210560819	G	A	40	84
BRCA	BR-0020	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-0020	HEATR7B2	SNP	Silent	5	41032909	G	A	40	46
BRCA	BR-0020	NLN	SNP	Missense_Mutation	5	65088313	G	A	44	84
BRCA	BR-0020	KIAA1586	SNP	Missense_Mutation	6	56919311	C	T	31	45
BRCA	BR-0021	ARMC3	SNP	Missense_Mutation	10	23270605	C	T	18	88
BRCA	BR-0021	GPR152	SNP	Silent	11	67219092	C	T	23	36
BRCA	BR-0021	SRRM4	SNP	Missense_Mutation	12	119592106	C	T	27	64
BRCA	BR-0021	RBL2	SNP	Missense_Mutation	16	53485693	A	G	4	92
BRCA	BR-0021	DHRS7B	SNP	Nonsense_Mutation	17	21086988	C	T	25	60
BRCA	BR-0021	MYLK	SNP	Missense_Mutation	3	123418920	G	A	40	66
BRCA	BR-0021	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	BR-0021	SLC22A5	SNP	Missense_Mutation	5	131726446	T	G	56	91
BRCA	BR-0021	CENPK	SNP	Missense_Mutation	5	64814429	T	C	51	86
BRCA	BR-0021	DNAJB9	SNP	Missense_Mutation	7	108213653	G	A	48	97
BRCA	BR-0021	WDR85	SNP	Splice_site	9	140459056	T	G	49	87
BRCA	BR-0022	SH2D2A	SNP	Missense_Mutation	1	156779105	C	T	21	50
BRCA	BR-0022	FBXO28	SNP	Missense_Mutation	1	224345272	G	A	35	99
BRCA	BR-0022	SIPA1L2	SNP	Missense_Mutation	1	232581473	G	C	44	82
BRCA	BR-0022	MACF1	SNP	Missense_Mutation	1	39924799	C	G	24	61
BRCA	BR-0022	OSBPL9	SNP	Nonsense_Mutation	1	52227547	C	T	29	84
BRCA	BR-0022	FAM159A	SNP	Missense_Mutation	1	53122605	C	T	19	48
BRCA	BR-0022	TNFRSF25	SNP	Missense_Mutation	1	6524475	C	T	21	81
BRCA	BR-0022	C10orf68	SNP	Missense_Mutation	10	33134840	G	C	33	60
BRCA	BR-0022	SIK2	SNP	Missense_Mutation	11	111572257	G	T	44	100
BRCA	BR-0022	CDHR5	SNP	Missense_Mutation	11	619490	C	T	30	49
BRCA	BR-0022	FAT3	SNP	Missense_Mutation	11	92543127	G	T	35	48
BRCA	BR-0022	PARP11	SNP	Splice_Site	12	3935401	T	G	55	82
BRCA	BR-0022	MUDENG	SNP	Missense_Mutation	14	57741543	C	T	30	76
BRCA	BR-0022	DAAM1	SNP	Silent	14	59798572	A	G	5	44
BRCA	BR-0022	C14orf4	SNP	Silent	14	77493191	C	A	31	49
BRCA	BR-0022	NSMCE1	SNP	Missense_Mutation	16	27244392	C	A	26	65
BRCA	BR-0022	CDH11	SNP	Silent	16	65038677	C	A	26	53
BRCA	BR-0022	CDH1	SNP	Missense_Mutation	16	68853271	G	A	41	42
BRCA	BR-0022	KIAA0195	SNP	Missense_Mutation	17	73490878	C	T	28	98
BRCA	BR-0022	TP53	SNP	Missense_Mutation	17	7574018	G	A	38	59
BRCA	BR-0022	OR10H1	SNP	Missense_Mutation	19	15918378	A	T	8	73
BRCA	BR-0022	UNC13A	SNP	Splice_Site	19	17760323	C	T	31	92
BRCA	BR-0022	LRP1B	SNP	Missense_Mutation	2	141680674	C	A	25	96
BRCA	BR-0022	TTN	SNP	Missense_Mutation	2	179462676	G	T	35	100
BRCA	BR-0022	COL5A2	SNP	Silent	2	189931188	G	A	39	51
BRCA	BR-0022	SPEG	SNP	Missense_Mutation	2	220347878	G	A	39	65
BRCA	BR-0022	MAP4K3	SNP	Nonsense_Mutation	2	39542460	C	A	32	90
BRCA	BR-0022	PIGT	SNP	Silent	20	44054340	C	T	23	45
BRCA	BR-0022	TTC3	SNP	Missense_Mutation	21	38494265	T	G	49	78
BRCA	BR-0022	DOCK11	SNP	Missense_Mutation	23	117707913	C	A	22	38
BRCA	BR-0022	FRMPD4	SNP	Silent	23	12728625	C	T	21	79
BRCA	BR-0022	GPR112	DNP	Missense_Mutation	23	135432390	GG	TT	47	60
BRCA	BR-0022	SCML2	SNP	Missense_Mutation	23	18264731	A	C	8	50
BRCA	BR-0022	USP11	SNP	Silent	23	47106531	G	A	46	58
BRCA	BR-0022	ZDHHC15	SNP	Missense_Mutation	23	74670677	C	A	21	51
BRCA	BR-0022	KLHL4	SNP	Missense_Mutation	23	86868897	C	A	32	55
BRCA	BR-0022	HRH1	SNP	Missense_Mutation	3	11301376	G	A	37	57
BRCA	BR-0022	CAND2	SNP	Silent	3	12858900	C	T	21	46
BRCA	BR-0022	ZNF385D	SNP	Nonsense_Mutation	3	21606096	G	T	46	88
BRCA	BR-0022	NKTR	SNP	Missense_Mutation	3	42679631	A	T	11	62
BRCA	BR-0022	MFSD8	SNP	Missense_Mutation	4	128842696	G	C	33	53
BRCA	BR-0022	NPY1R	SNP	Missense_Mutation	4	164247125	G	T	48	60
BRCA	BR-0022	PAICS	SNP	Missense_Mutation	4	57318209	G	A	45	92
BRCA	BR-0022	BTNL3	SNP	Missense_Mutation	5	180429675	C	T	19	49
BRCA	BR-0022	MAK	SNP	Missense_Mutation	6	10802132	G	T	46	100
BRCA	BR-0022	NUP43	SNP	Missense_Mutation	6	150067084	C	G	30	100
BRCA	BR-0022	TBX18	SNP	Missense_Mutation	6	85472272	T	C	63	93
BRCA	BR-0022	GABRR2	SNP	Missense_Mutation	6	89977487	G	A	41	100
BRCA	BR-0022	OR2F1	SNP	Missense_Mutation	7	143657974	T	C	53	76
BRCA	BR-0022	TMEM195	SNP	Missense_Mutation	7	15584526	G	C	36	51
BRCA	BR-0022	DNAH11	SNP	Missense_Mutation	7	21784157	C	G	17	51
BRCA	BR-0022	PGAM2	SNP	Splice_site	7	44102361	C	A	22	51
BRCA	BR-0022	C9orf91	SNP	Missense_Mutation	9	117389242	T	C	49	74
BRCA	BR-0022	ASTN2	SNP	Silent	9	119188316	G	T	47	49
BRCA	BR-0022	DNAJA1	SNP	Missense_Mutation	9	33036684	C	A	30	96
BRCA	BR-0022	HIATL1	SNP	Silent	9	97218567	G	C	40	21
BRCA	BR-0023	TACC2	SNP	Missense_Mutation	10	123969987	C	T	23	81
BRCA	BR-0023	PARD3	SNP	Missense_Mutation	10	34606224	G	A	33	99
BRCA	BR-0023	ZNF503	SNP	Missense_Mutation	10	77160930	C	G	31	98
BRCA	BR-0023	PLCB3	SNP	Missense_Mutation	11	64031501	G	A	41	84
BRCA	BR-0023	ANKS1B	SNP	Missense_Mutation	12	100377945	G	C	33	78
BRCA	BR-0023	OR6C1	SNP	Silent	12	55714476	C	T	29	51
BRCA	BR-0023	ARHGEF7	SNP	Missense_Mutation	13	111862263	C	T	29	97
BRCA	BR-0023	BRCA2	SNP	Missense_Mutation	13	32905104	G	A	45	49
BRCA	BR-0023	TDRD3	SNP	Silent	13	61083912	C	T	32	76
BRCA	BR-0023	RPGRIP1	SNP	Missense_Mutation	14	21816386	G	C	33	80
BRCA	BR-0023	MPP5	SNP	Missense_Mutation	14	67746200	G	C	45	91
BRCA	BR-0023	BLM	SNP	Missense_Mutation	15	91354530	C	A	21	70
BRCA	BR-0023	IL4R	SNP	Missense_Mutation	16	27373616	G	C	41	56
BRCA	BR-0023	ZNF646	SNP	Missense_Mutation	16	31089517	G	C	33	61
BRCA	BR-0023	ITGA3	SNP	Nonsense_Mutation	17	48156542	G	T	41	73
BRCA	BR-0023	C17orf47	SNP	Missense_Mutation	17	56621388	C	T	32	78
BRCA	BR-0023	FASN	SNP	Silent	17	80048914	C	T	29	57
BRCA	BR-0023	DSG4	SNP	Missense_Mutation	18	28971090	C	T	28	68
BRCA	BR-0023	SLC39A6	SNP	Missense_Mutation	18	33706384	G	A	33	61
BRCA	BR-0023	SF4	SNP	Missense_Mutation	19	19387797	T	C	63	85
BRCA	BR-0023	HSD17B14	SNP	Missense_Mutation	19	49337559	C	T	29	70
BRCA	BR-0023	BIRC8	SNP	Missense_Mutation	19	53793093	G	A	42	55
BRCA	BR-0023	ZDBF2	SNP	Silent	2	207146579	G	A	33	62
BRCA	BR-0023	WNT10A	SNP	Missense_Mutation	2	219755014	C	G	32	63
BRCA	BR-0023	TET3	SNP	Missense_Mutation	2	74274708	C	T	32	54
BRCA	BR-0023	MAVS	SNP	Silent	20	3846533	C	G	26	50
BRCA	BR-0023	LAMA5	SNP	Missense_Mutation	20	60903035	C	T	29	97
BRCA	BR-0023	DOPEY2	SNP	Silent	21	37618469	G	A	37	43
BRCA	BR-0023	FOXR2	SNP	Silent	23	55650192	C	A	26	45
BRCA	BR-0023	ATP2B2	SNP	Missense_Mutation	3	10417161	C	T	31	96
BRCA	BR-0023	SETD2	SNP	Missense_Mutation	3	47161964	C	A	32	71
BRCA	BR-0023	ZNF654	SNP	Nonsense_Mutation	3	88189217	C	T	29	63
BRCA	BR-0023	MFSD8	SNP	Missense_Mutation	4	128842783	G	C	33	74
BRCA	BR-0023	WDR36	SNP	Missense_Mutation	5	110462489	T	A	58	72
BRCA	BR-0023	ANKRD55	SNP	Missense_Mutation	5	55479372	C	G	32	87
BRCA	BR-0023	AP3B1	SNP	Silent	5	77590332	C	T	31	51
BRCA	BR-0023	ZFYVE16	SNP	Missense_Mutation	5	79755263	G	A	41	97
BRCA	BR-0023	DOCK4	SNP	Missense_Mutation	7	111398805	C	T	30	86
BRCA	BR-0023	PPP3CC	SNP	Missense_Mutation	8	22396994	C	A	27	76
BRCA	BR-0023	DUSP26	SNP	Missense_Mutation	8	33449535	G	T	46	65
BRCA	BR-0023	TAL2	SNP	Missense_Mutation	9	108424921	G	A	45	100
BRCA	BR-0024	CHD1L	SNP	Missense_Mutation	1	146758064	G	T	34	50
BRCA	BR-0024	KLHDC7A	SNP	Missense_Mutation	1	18807489	G	C	41	56
BRCA	BR-0024	PLEKHA6	SNP	Missense_Mutation	1	204197314	G	C	40	57
BRCA	BR-0024	ENKUR	SNP	Missense_Mutation	10	25273696	C	T	29	80
BRCA	BR-0024	MUC5B	SNP	Missense_Mutation	11	1256668	A	C	6	51
BRCA	BR-0024	GPR133	SNP	Silent	12	131623751	C	T	29	56
BRCA	BR-0024	ARHGAP9	SNP	Missense_Mutation	12	57873071	C	T	26	80
BRCA	BR-0024	INTS6	SNP	De_novo_Start_InFrame	13	51957961	G	T	36	49
BRCA	BR-0024	STRA6	SNP	Missense_Mutation	15	74494523	T	C	55	43
BRCA	BR-0024	VWA3A	SNP	Missense_Mutation	16	22163878	C	T	19	81
BRCA	BR-0024	KSR1	SNP	Missense_Mutation	17	25932686	T	G	59	91
BRCA	BR-0024	TP53	SNP	Nonsense_Mutation	17	7578212	G	A	37	66
BRCA	BR-0024	NARS	SNP	Missense_Mutation	18	55274843	G	C	43	98
BRCA	BR-0024	PLA2G4C	SNP	Missense_Mutation	19	48607951	C	T	23	68
BRCA	BR-0024	ZNF667	SNP	Missense_Mutation	19	56953522	T	G	51	59
BRCA	BR-0024	ZDBF2	SNP	Missense_Mutation	2	207171719	G	A	45	56
BRCA	BR-0024	CD40	DNP	Missense_Mutation	20	44757572	CC	TT	30	57
BRCA	BR-0024	COL18A1	SNP	Silent	21	46932249	G	A	37	42
BRCA	BR-0024	CNTN6	SNP	Missense_Mutation	3	1320178	C	T	23	90
BRCA	BR-0024	PIK3CA	SNP	Silent	3	178947195	A	G	14	46
BRCA	BR-0024	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	BR-0024	MCF2L2	SNP	Missense_Mutation	3	182925484	A	G	1	68
BRCA	BR-0024	GOPC	SNP	Missense_Mutation	6	117923369	A	C	14	90
BRCA	BR-0024	SPACA1	SNP	Missense_Mutation	6	88773865	T	G	52	75
BRCA	BR-0024	PNPLA8	SNP	Missense_Mutation	7	108138013	A	C	2	92
BRCA	BR-0024	ABCA13	SNP	Missense_Mutation	7	48311477	A	T	4	42
BRCA	BR-0024	CRISPLD1	SNP	Missense_Mutation	8	75927075	A	G	5	89
BRCA	BR-0024	FAM120A	SNP	Missense_Mutation	9	96259787	A	C	10	90
BRCA	BR-0025	PALMD	SNP	Missense_Mutation	1	100159613	A	G	12	68
BRCA	BR-0025	PTPN22	SNP	Missense_Mutation	1	114380754	T	A	54	52
BRCA	BR-0025	SETDB1	SNP	Missense_Mutation	1	150936764	A	C	14	89
BRCA	BR-0025	TUFT1	SNP	Splice_Site	1	151538638	G	T	35	71
BRCA	BR-0025	ASH1L	SNP	Silent	1	155327481	A	G	6	44
BRCA	BR-0025	SLAMF1	SNP	Missense_Mutation	1	160607049	C	T	30	72
BRCA	BR-0025	NDUFS2	SNP	Missense_Mutation	1	161183684	A	G	8	75
BRCA	BR-0025	FCRLB	SNP	Missense_Mutation	1	161693176	A	G	16	47
BRCA	BR-0025	POGK	SNP	Nonsense_Mutation	1	166819567	G	A	47	74
BRCA	BR-0025	ADCY10	SNP	Missense_Mutation	1	167817619	G	A	45	76
BRCA	BR-0025	CACNA1E	SNP	Missense_Mutation	1	181690901	C	A	19	99
BRCA	BR-0025	SOX13	SNP	Missense_Mutation	1	204086730	A	C	8	83
BRCA	BR-0025	MYOM3	SNP	Missense_Mutation	1	24418793	T	C	54	62
BRCA	BR-0025	ZNF692	SNP	Silent	1	249144513	G	A	35	16
BRCA	BR-0025	KIAA1522	SNP	Missense_Mutation	1	33235952	G	A	38	69
BRCA	BR-0025	GNL2	SNP	Missense_Mutation	1	38034883	C	G	21	57
BRCA	BR-0025	MPL	SNP	Silent	1	43805228	C	A	22	54
BRCA	BR-0025	CYP4X1	SNP	Missense_Mutation	1	47489583	C	G	28	63
BRCA	BR-0025	ABCA4	SNP	Silent	1	94476403	G	A	36	62
BRCA	BR-0025	MYO3A	SNP	Missense_Mutation	10	26442808	G	A	48	50
BRCA	BR-0025	SVIL	SNP	Missense_Mutation	10	29822154	G	A	40	77
BRCA	BR-0025	LRIT1	SNP	Missense_Mutation	10	85993835	C	A	21	97
BRCA	BR-0025	GRID1	SNP	Missense_Mutation	10	87484247	G	A	43	96
BRCA	BR-0025	PANK1	SNP	Silent	10	91353002	G	A	47	79
BRCA	BR-0025	GOLGA7B	SNP	Silent	10	99623945	C	G	28	45
BRCA	BR-0025	C2CD2L	SNP	Missense_Mutation	11	118983507	G	A	39	94
BRCA	BR-0025	PDZD3	SNP	Nonsense_Mutation	11	119059822	C	T	25	59
BRCA	BR-0025	BSX	SNP	Missense_Mutation	11	122852322	A	C	3	75
BRCA	BR-0025	IGSF22	SNP	Missense_Mutation	11	18741762	A	T	12	79
BRCA	BR-0025	TSPAN18	SNP	Missense_Mutation	11	44931278	C	T	26	69
BRCA	BR-0025	OR9I1	SNP	Missense_Mutation	11	57886432	C	G	25	59
BRCA	BR-0025	CPSF7	SNP	Missense_Mutation	11	61178426	G	A	39	65
BRCA	BR-0025	C11orf9	SNP	Missense_Mutation	11	61543874	G	A	40	94
BRCA	BR-0025	TUT1	SNP	Missense_Mutation	11	62343060	G	A	42	46
BRCA	BR-0025	CAPN1	SNP	Silent	11	64953474	C	G	23	48
BRCA	BR-0025	YIF1A	SNP	Missense_Mutation	11	66055748	G	A	42	62
BRCA	BR-0025	KDM2A	SNP	Missense_Mutation	11	67017699	G	T	39	74
BRCA	BR-0025	DHCR7	SNP	Missense_Mutation	11	71152445	G	C	34	60
BRCA	BR-0025	RELT	SNP	Silent	11	73105585	G	A	46	65
BRCA	BR-0025	PNPLA2	SNP	Missense_Mutation	11	822571	C	T	23	58
BRCA	BR-0025	PIWIL4	SNP	Missense_Mutation	11	94340790	G	T	43	96
BRCA	BR-0025	ANKRD13A	SNP	Missense_Mutation	12	110457090	G	A	48	71
BRCA	BR-0025	MYL2	SNP	Missense_Mutation	12	111351120	G	T	43	80
BRCA	BR-0025	TRAFD1	SNP	Silent	12	112578694	G	A	35	63
BRCA	BR-0025	SMUG1	SNP	Missense_Mutation	12	54575935	G	A	46	52
BRCA	BR-0025	RDH16	SNP	Missense_Mutation	12	57345829	G	A	39	69
BRCA	BR-0025	VWF	SNP	Silent	12	6091120	G	C	35	50
BRCA	BR-0025	LPAR5	SNP	Silent	12	6730295	G	A	40	54
BRCA	BR-0025	CARKD	SNP	Missense_Mutation	13	111290733	C	A	24	98
BRCA	BR-0025	FRY	SNP	Silent	13	32783129	C	T	19	37
BRCA	BR-0025	SCEL	SNP	Splice_site	13	78191996	A	G	11	74
BRCA	BR-0025	EDNRB	SNP	Missense_Mutation	13	78493538	G	C	41	57
BRCA	BR-0025	SOX21	SNP	Silent	13	95364127	G	A	40	68
BRCA	BR-0025	EVL	SNP	Missense_Mutation	14	100602286	C	A	26	50
BRCA	BR-0025	WDR25	SNP	Silent	14	100847519	C	T	27	33
BRCA	BR-0025	WDR20	SNP	Missense_Mutation	14	102606473	G	T	43	59
BRCA	BR-0025	TDRD9	SNP	Silent	14	104491930	C	T	17	45
BRCA	BR-0025	GPR132	SNP	Silent	14	105517826	G	T	35	46
BRCA	BR-0025	OR6S1	SNP	Missense_Mutation	14	21109399	C	A	21	95
BRCA	BR-0025	SALL2	SNP	Missense_Mutation	14	21992262	A	G	11	65
BRCA	BR-0025	HECTD1	SNP	Splice_site	14	31583545	T	C	52	92
BRCA	BR-0025	CLEC14A	SNP	Missense_Mutation	14	38724314	C	T	27	36
BRCA	BR-0025	SMOC1	SNP	Missense_Mutation	14	70444664	G	T	43	67
BRCA	BR-0025	RGS6	SNP	Missense_Mutation	14	72985096	C	G	24	58
BRCA	BR-0025	ABCD4	SNP	Missense_Mutation	14	74761882	G	A	37	84
BRCA	BR-0025	CA12	SNP	Missense_Mutation	15	63637717	C	T	23	96
BRCA	BR-0025	GOLGA6A	SNP	Splice_Site	15	74372956	C	A	17	55
BRCA	BR-0025	FAH	SNP	Silent	15	80473473	G	A	46	72
BRCA	BR-0025	C15orf42	SNP	Silent	15	90164769	T	C	55	52
BRCA	BR-0025	IGF1R	SNP	Missense_Mutation	15	99456467	G	A	40	60
BRCA	BR-0025	LRRC28	SNP	Missense_Mutation	15	99903389	G	T	39	63
BRCA	BR-0025	HYDIN	SNP	Missense_Mutation	16	70902549	C	A	21	87
BRCA	BR-0025	PLCG2	SNP	Silent	16	81929425	C	T	19	48
BRCA	BR-0025	ACSF3	SNP	Silent	16	89167347	C	T	27	37
BRCA	BR-0025	CARHSP1	SNP	Missense_Mutation	16	8952304	C	T	19	59
BRCA	BR-0025	MLLT6	SNP	Missense_Mutation	17	36871908	C	T	19	58
BRCA	BR-0025	AOC3	SNP	Missense_Mutation	17	41007507	A	G	7	56
BRCA	BR-0025	SLC25A39	SNP	Missense_Mutation	17	42397591	C	T	31	82
BRCA	BR-0025	PELP1	SNP	Missense_Mutation	17	4576332	G	A	41	61
BRCA	BR-0025	TBX21	SNP	Missense_Mutation	17	45822469	C	T	23	59
BRCA	BR-0025	SLC35B1	SNP	Silent	17	47782603	C	T	19	40
BRCA	BR-0025	SPATA20	SNP	Missense_Mutation	17	48625676	C	T	27	50
BRCA	BR-0025	RNF43	SNP	Missense_Mutation	17	56492739	C	G	18	93
BRCA	BR-0025	SSTR2	SNP	Nonsense_Mutation	17	71165500	G	A	42	53
BRCA	BR-0025	SDK2	SNP	Silent	17	71361527	G	A	38	44
BRCA	BR-0025	EVPL	SNP	Missense_Mutation	17	74014660	G	A	38	56
BRCA	BR-0025	SEPT9	SNP	Silent	17	75484932	C	A	23	13
BRCA	BR-0025	RNF213	SNP	Missense_Mutation	17	78320176	G	A	40	57
BRCA	BR-0025	SIRT7	SNP	Missense_Mutation	17	79872517	G	A	40	55
BRCA	BR-0025	CDH7	SNP	Missense_Mutation	18	63477213	G	A	36	77
BRCA	BR-0025	KRI1	SNP	Silent	19	10670053	C	T	28	55
BRCA	BR-0025	SMARCA4	SNP	Missense_Mutation	19	11096874	C	T	31	95
BRCA	BR-0025	ZNF442	SNP	Nonsense_Mutation	19	12461510	G	A	40	46
BRCA	BR-0025	HAPLN4	SNP	Missense_Mutation	19	19369400	C	T	27	89
BRCA	BR-0025	CILP2	SNP	Missense_Mutation	19	19654127	C	T	27	55
BRCA	BR-0025	LMNB2	SNP	Missense_Mutation	19	2433969	C	G	26	68
BRCA	BR-0025	PRODH2	SNP	Silent	19	36297460	C	T	27	38
BRCA	BR-0025	FCGBP	SNP	Missense_Mutation	19	40363246	G	A	39	50
BRCA	BR-0025	MEGF8	SNP	Nonsense_Mutation	19	42837852	C	T	27	69
BRCA	BR-0025	PHLDB3	SNP	Silent	19	44001342	A	G	12	34
BRCA	BR-0025	GPR4	SNP	Missense_Mutation	19	46094913	G	A	39	96
BRCA	BR-0025	RSPH6A	SNP	Missense_Mutation	19	46318256	C	A	24	41
BRCA	BR-0025	FOXA3	SNP	Silent	19	46376244	C	T	19	44
BRCA	BR-0025	ZC3H4	SNP	Silent	19	47570630	G	A	40	44
BRCA	BR-0025	DHX34	SNP	Missense_Mutation	19	47884531	G	A	38	94
BRCA	BR-0025	SULT2B1	SNP	Missense_Mutation	19	49102536	G	A	34	51
BRCA	BR-0025	ZNF701	SNP	Missense_Mutation	19	53086675	C	T	19	24
BRCA	BR-0025	ZNF772	SNP	Missense_Mutation	19	57986454	A	G	14	50
BRCA	BR-0025	ZNF446	SNP	Missense_Mutation	19	58988662	G	A	38	82
BRCA	BR-0025	PNPLA6	SNP	Missense_Mutation	19	7607926	C	T	25	79
BRCA	BR-0025	ADAMTS10	SNP	Missense_Mutation	19	8665901	C	T	19	94
BRCA	BR-0025	ST6GAL2	SNP	Missense_Mutation	2	107459719	G	A	39	54
BRCA	BR-0025	NPHP1	SNP	Missense_Mutation	2	110889304	T	G	52	59
BRCA	BR-0025	TPO	SNP	Missense_Mutation	2	1507741	G	T	44	43
BRCA	BR-0025	SF3B1	SNP	Silent	2	198266160	C	T	28	52
BRCA	BR-0025	TNS1	SNP	Missense_Mutation	2	218713165	G	A	38	45
BRCA	BR-0025	FBXO36	SNP	Missense_Mutation	2	230841089	A	G	14	51
BRCA	BR-0025	OTOF	SNP	Missense_Mutation	2	26688597	T	G	54	91
BRCA	BR-0025	HEATR5B	SNP	Silent	2	37310546	G	A	43	48
BRCA	BR-0025	FOXN2	SNP	Missense_Mutation	2	48602520	A	G	14	72
BRCA	BR-0025	CD207	SNP	Missense_Mutation	2	71060983	C	T	19	35
BRCA	BR-0025	C2orf78	SNP	Missense_Mutation	2	74042734	G	A	33	55
BRCA	BR-0025	TET3	SNP	Silent	2	74326435	C	T	27	43
BRCA	BR-0025	SLC4A5	SNP	Silent	2	74479458	G	A	38	47
BRCA	BR-0025	MRPL53	SNP	Missense_Mutation	2	74699563	G	C	39	66
BRCA	BR-0025	SEMA4F	SNP	Missense_Mutation	2	74900892	G	C	33	70
BRCA	BR-0025	REG1A	SNP	Missense_Mutation	2	79349244	C	T	22	58
BRCA	BR-0025	TCF7L1	SNP	Missense_Mutation	2	85531409	G	A	39	72
BRCA	BR-0025	ATOH8	SNP	Missense_Mutation	2	85981437	C	G	20	57
BRCA	BR-0025	VPS16	SNP	Silent	20	2846920	C	T	27	20
BRCA	BR-0025	ASXL1	SNP	Missense_Mutation	20	31022529	T	C	55	51
BRCA	BR-0025	LPIN3	SNP	Silent	20	39978465	G	A	46	48
BRCA	BR-0025	LPIN3	SNP	Missense_Mutation	20	39986063	C	T	18	55
BRCA	BR-0025	R3HDML	SNP	Missense_Mutation	20	42972061	A	C	3	53
BRCA	BR-0025	PABPC1L	SNP	Missense_Mutation	20	43550268	G	A	39	99
BRCA	BR-0025	MOCS3	SNP	Silent	20	49576126	C	T	23	26
BRCA	BR-0025	SALL4	SNP	Missense_Mutation	20	50408091	C	A	26	39
BRCA	BR-0025	C20orf54	SNP	Silent	20	741730	C	G	21	56
BRCA	BR-0025	HUNK	SNP	Silent	21	33346975	C	T	17	70
BRCA	BR-0025	SYNJ1	SNP	Silent	21	34038409	T	G	54	52
BRCA	BR-0025	ETS2	SNP	Missense_Mutation	21	40191600	A	G	8	71
BRCA	BR-0025	MICAL3	SNP	Missense_Mutation	22	18293536	C	G	23	98
BRCA	BR-0025	PI4KA	SNP	Splice_Site	22	21064287	T	C	55	91
BRCA	BR-0025	GTPBP1	SNP	Silent	22	39123307	C	T	31	43
BRCA	BR-0025	APOBEC3D	SNP	Missense_Mutation	22	39427910	C	T	17	52
BRCA	BR-0025	SAPS2	SNP	Silent	22	50853062	C	T	28	71
BRCA	BR-0025	ATG4A	SNP	Missense_Mutation	23	107369333	A	T	14	63
BRCA	BR-0025	AGTR2	SNP	Missense_Mutation	23	115304515	A	G	9	61
BRCA	BR-0025	ARHGAP4	SNP	Silent	23	153186110	G	T	43	48
BRCA	BR-0025	HCFC1	SNP	Silent	23	153222886	C	T	23	28
BRCA	BR-0025	FTSJ1	SNP	Missense_Mutation	23	48340994	G	A	39	57
BRCA	BR-0025	PPP1R3F	SNP	Silent	23	49142310	G	A	37	39
BRCA	BR-0025	ZBTB20	SNP	Missense_Mutation	3	114069130	C	T	19	100
BRCA	BR-0025	ZIC4	SNP	Silent	3	147108987	G	A	37	70
BRCA	BR-0025	HTR3E	SNP	Missense_Mutation	3	183824023	C	T	31	50
BRCA	BR-0025	GRM2	SNP	Missense_Mutation	3	51751677	T	C	58	91
BRCA	BR-0025	CGGBP1	SNP	Missense_Mutation	3	88104744	G	A	34	82
BRCA	BR-0025	PPA2	SNP	Missense_Mutation	4	106367601	C	T	27	99
BRCA	BR-0025	RGS12	SNP	Silent	4	3432495	G	A	38	43
BRCA	BR-0025	USO1	SNP	Silent	4	76711928	A	G	6	48
BRCA	BR-0025	DSPP	SNP	Silent	4	88534082	G	C	41	49
BRCA	BR-0025	SLC12A7	SNP	Missense_Mutation	5	1079524	G	A	40	92
BRCA	BR-0025	TRPC7	SNP	Silent	5	135692812	G	A	40	50
BRCA	BR-0025	ARAP3	SNP	Missense_Mutation	5	141059802	G	C	42	56
BRCA	BR-0025	PCDH12	SNP	Missense_Mutation	5	141335377	C	A	24	49
BRCA	BR-0025	SPEF2	SNP	Missense_Mutation	5	35700834	G	A	36	47
BRCA	BR-0025	RANBP3L	SNP	Missense_Mutation	5	36260958	G	T	47	52
BRCA	BR-0025	HEATR7B2	SNP	Missense_Mutation	5	41038849	G	T	47	60
BRCA	BR-0025	HEATR7B2	SNP	Missense_Mutation	5	41064613	G	T	34	56
BRCA	BR-0025	AIM1	SNP	Missense_Mutation	6	106968649	C	A	22	78
BRCA	BR-0025	REPS1	SNP	Missense_Mutation	6	139266703	C	G	22	71
BRCA	BR-0025	HIVEP2	SNP	Silent	6	143094232	A	T	3	46
BRCA	BR-0025	HIVEP2	SNP	Missense_Mutation	6	143095551	C	T	18	63
BRCA	BR-0025	TIAM2	SNP	Missense_Mutation	6	155578212	G	A	36	58
BRCA	BR-0025	UNC93A	SNP	Missense_Mutation	6	167708039	C	T	17	82
BRCA	BR-0025	LST1	SNP	Splice_Site	6	31555719	A	C	7	67
BRCA	BR-0025	VPS52	SNP	Missense_Mutation	6	33236314	C	T	27	73
BRCA	BR-0025	ITPR3	SNP	Missense_Mutation	6	33636385	G	C	33	67
BRCA	BR-0025	PNPLA1	SNP	Missense_Mutation	6	36269947	C	A	20	45
BRCA	BR-0025	C6orf89	SNP	Missense_Mutation	6	36882198	C	G	21	65
BRCA	BR-0025	FRS3	SNP	Silent	6	41738654	G	A	38	47
BRCA	BR-0025	RPL7L1	SNP	Missense_Mutation	6	42851330	G	A	42	86
BRCA	BR-0025	ZNF451	SNP	Missense_Mutation	6	57006862	C	T	27	59
BRCA	BR-0025	IRAK1BP1	SNP	Silent	6	79577491	C	T	18	58
BRCA	BR-0025	PDIA4	SNP	Missense_Mutation	7	148703009	A	G	9	91
BRCA	BR-0025	INMT	SNP	Missense_Mutation	7	30795444	G	A	42	68
BRCA	BR-0025	UPP1	SNP	Silent	7	48147040	C	A	27	49
BRCA	BR-0025	EGFR	SNP	Missense_Mutation	7	55220340	C	G	23	54
BRCA	BR-0025	ZDHHC4	SNP	Missense_Mutation	7	6624671	G	A	40	96
BRCA	BR-0025	RSBN1L	SNP	Missense_Mutation	7	77378947	G	A	40	54
BRCA	BR-0025	GRHL2	SNP	Nonsense_Mutation	8	102505011	C	A	31	96
BRCA	BR-0025	UBR5	SNP	Splice_site	8	103372416	G	C	45	97
BRCA	BR-0025	COL14A1	SNP	Splice_site	8	121379411	T	C	58	49
BRCA	BR-0025	TG	SNP	Missense_Mutation	8	133894119	C	T	25	80
BRCA	BR-0025	EIF2C2	SNP	Missense_Mutation	8	141566081	G	A	39	87
BRCA	BR-0025	DENND3	SNP	Silent	8	142188231	G	A	46	55
BRCA	BR-0025	CYP11B1	SNP	Nonsense_Mutation	8	143961083	C	T	26	80
BRCA	BR-0025	OPLAH	SNP	Missense_Mutation	8	145113739	T	C	56	73
BRCA	BR-0025	ENTPD4	SNP	Silent	8	23290466	G	A	39	25
BRCA	BR-0025	CSMD1	SNP	Missense_Mutation	8	3000038	A	T	3	92
BRCA	BR-0025	RC3H2	SNP	Missense_Mutation	9	125639858	T	C	55	68
BRCA	BR-0025	PKN3	SNP	Missense_Mutation	9	131482766	G	A	37	91
BRCA	BR-0025	C9orf7	SNP	Missense_Mutation	9	136333705	C	A	26	76
BRCA	BR-0025	SDCCAG3	SNP	Nonsense_Mutation	9	139298625	G	A	38	56
BRCA	BR-0025	NOTCH1	SNP	Missense_Mutation	9	139397768	A	G	7	89
BRCA	BR-0025	ADAMTSL1	SNP	Missense_Mutation	9	18817166	A	G	6	61
BRCA	BR-0025	SIGMAR1	SNP	Missense_Mutation	9	34635772	C	T	19	76
BRCA	BR-0026	RCOR3	SNP	Silent	1	211449625	A	G	2	49
BRCA	BR-0026	PRDM16	SNP	Missense_Mutation	1	3301765	C	T	27	53
BRCA	BR-0026	YARS	SNP	Silent	1	33241684	G	A	45	50
BRCA	BR-0026	IDE	SNP	Missense_Mutation	10	94225531	G	A	48	100
BRCA	BR-0026	ST3GAL4	SNP	Silent	11	126278265	C	T	32	56
BRCA	BR-0026	ING1	SNP	Silent	13	111366526	C	T	30	55
BRCA	BR-0026	ESRP2	SNP	Silent	16	68267252	G	A	41	54
BRCA	BR-0026	DNAH2	SNP	Silent	17	7638023	C	A	30	56
BRCA	BR-0026	COL4A6	SNP	Splice_site	23	107446159	G	T	39	56
BRCA	BR-0026	PHKA1	SNP	Missense_Mutation	23	71831000	G	A	40	53
BRCA	BR-0026	NAF1	SNP	Silent	4	164050118	A	G	11	43
BRCA	BR-0026	HIST1H4C	SNP	Missense_Mutation	6	26104216	G	T	44	96
BRCA	BR-0026	ANKS1A	SNP	Silent	6	34985512	G	A	33	56
BRCA	BR-0026	FAM167A	SNP	Missense_Mutation	8	11301899	C	T	19	59
BRCA	BR-0027	CCDC76	SNP	Missense_Mutation	1	100605759	G	A	45	61
BRCA	BR-0027	KIF1B	SNP	Missense_Mutation	1	10364385	C	A	19	98
BRCA	BR-0027	C1orf127	SNP	Missense_Mutation	1	11015103	C	G	29	66
BRCA	BR-0027	PLOD1	SNP	Silent	1	12018692	C	T	29	66
BRCA	BR-0027	POGZ	SNP	Missense_Mutation	1	151377799	C	G	32	71
BRCA	BR-0027	CFH	SNP	Missense_Mutation	1	196659351	C	G	30	62
BRCA	BR-0027	RPS6KC1	SNP	Missense_Mutation	1	213303229	C	G	29	77
BRCA	BR-0027	MIA3	SNP	Missense_Mutation	1	222803008	C	G	32	56
BRCA	BR-0027	TP53BP2	SNP	Missense_Mutation	1	223976833	A	G	6	93
BRCA	BR-0027	CNNM2	SNP	Missense_Mutation	10	104836739	G	C	34	80
BRCA	BR-0027	PNLIP	SNP	Missense_Mutation	10	118318768	G	C	33	59
BRCA	BR-0027	CDC123	SNP	Silent	10	12257804	C	G	32	50
BRCA	BR-0027	CDC123	SNP	Silent	10	12288207	C	T	29	48
BRCA	BR-0027	KIAA1279	SNP	Missense_Mutation	10	70748757	G	A	37	99
BRCA	BR-0027	MMP13	SNP	Missense_Mutation	11	102816417	G	C	43	65
BRCA	BR-0027	EXPH5	SNP	Nonsense_Mutation	11	108385107	G	C	45	66
BRCA	BR-0027	OR8K1	SNP	Silent	11	56113661	G	T	47	49
BRCA	BR-0027	SART1	SNP	Missense_Mutation	11	65733606	G	A	42	78
BRCA	BR-0027	PAAF1	SNP	Missense_Mutation	11	73620606	C	G	30	81
BRCA	BR-0027	WEE1	SNP	Silent	11	9603179	G	A	45	53
BRCA	BR-0027	MYBPC1	SNP	Missense_Mutation	12	102040551	G	C	45	99
BRCA	BR-0027	VSIG10	SNP	Silent	12	118517389	C	T	20	63
BRCA	BR-0027	COQ5	SNP	Missense_Mutation	12	120960161	G	C	45	74
BRCA	BR-0027	GPR133	SNP	Missense_Mutation	12	131451058	G	A	41	91
BRCA	BR-0027	ULK1	SNP	Silent	12	132405746	C	T	32	47
BRCA	BR-0027	FGFR1OP2	SNP	Missense_Mutation	12	27117660	G	T	33	58
BRCA	BR-0027	OR8S1	SNP	Missense_Mutation	12	48919694	G	A	36	50
BRCA	BR-0027	MLL2	SNP	Missense_Mutation	12	49420010	C	T	31	98
BRCA	BR-0027	KCNA5	SNP	Silent	12	5154510	C	G	30	52
BRCA	BR-0027	NECAP1	SNP	Missense_Mutation	12	8245365	C	G	29	63
BRCA	BR-0027	DUSP6	SNP	Silent	12	89745526	G	C	33	42
BRCA	BR-0027	EXOC5	SNP	Missense_Mutation	14	57689053	C	T	29	94
BRCA	BR-0027	RAD51	SNP	Missense_Mutation	15	40998378	G	A	45	97
BRCA	BR-0027	GALK2	SNP	Missense_Mutation	15	49584638	C	A	29	100
BRCA	BR-0027	PAQR5	SNP	Missense_Mutation	15	69696138	G	C	33	60
BRCA	BR-0027	KLHL25	SNP	Silent	15	86311656	G	A	41	51
BRCA	BR-0027	ABHD2	SNP	Splice_Site	15	89694906	A	C	15	94
BRCA	BR-0027	IQGAP1	SNP	Silent	15	91021053	C	T	29	78
BRCA	BR-0027	PARN	SNP	Silent	16	14723479	G	A	33	66
BRCA	BR-0027	COG7	SNP	Missense_Mutation	16	23457274	G	A	45	80
BRCA	BR-0027	XPO6	SNP	Silent	16	28113195	G	A	45	45
BRCA	BR-0027	DYNC1LI2	SNP	Missense_Mutation	16	66761629	G	C	47	95
BRCA	BR-0027	FTSJD1	SNP	Silent	16	71319623	C	T	32	71
BRCA	BR-0027	JPH3	SNP	Splice_site	16	87730265	G	C	45	56
BRCA	BR-0027	CDK5R1	SNP	Silent	17	30815160	C	T	23	51
BRCA	BR-0027	TUBD1	SNP	Missense_Mutation	17	57968322	C	G	32	50
BRCA	BR-0027	RGS9	SNP	Missense_Mutation	17	63156973	C	G	32	52
BRCA	BR-0027	BPTF	SNP	Splice_site	17	65936770	C	T	21	97
BRCA	BR-0027	DULLARD	SNP	Silent	17	7150392	G	A	45	55
BRCA	BR-0027	TP53	SNP	Splice_Site	17	7578555	C	G	20	82
BRCA	BR-0027	ZCCHC2	SNP	Nonsense_Mutation	18	60230342	C	T	29	75
BRCA	BR-0027	CCDC102B	SNP	Nonsense_Mutation	18	66721318	G	T	33	58
BRCA	BR-0027	ZNF555	SNP	Missense_Mutation	19	2853265	G	A	46	87
BRCA	BR-0027	EHD2	SNP	Silent	19	48229400	C	T	32	48
BRCA	BR-0027	FPR2	SNP	Silent	19	52272640	C	T	29	54
BRCA	BR-0027	UBE2S	SNP	Silent	19	55915760	G	A	35	74
BRCA	BR-0027	MZF1	SNP	Missense_Mutation	19	59080671	C	G	29	54
BRCA	BR-0027	SULT1C2	SNP	Missense_Mutation	2	108924854	G	C	33	52
BRCA	BR-0027	SNTG2	SNP	Missense_Mutation	2	1243519	G	A	42	67
BRCA	BR-0027	C2orf77	SNP	Missense_Mutation	2	170502570	T	G	60	49
BRCA	BR-0027	NEUROD1	SNP	Missense_Mutation	2	182543545	G	T	45	64
BRCA	BR-0027	ALS2	SNP	Missense_Mutation	2	202622242	C	G	32	93
BRCA	BR-0027	INHA	SNP	Silent	2	220439480	C	T	29	54
BRCA	BR-0027	COL4A3	SNP	Missense_Mutation	2	228148568	G	C	33	49
BRCA	BR-0027	KIDINS220	SNP	Missense_Mutation	2	8910894	C	G	29	97
BRCA	BR-0027	ACTR1B	SNP	Missense_Mutation	2	98275820	C	G	30	82
BRCA	BR-0027	AVP	SNP	Nonsense_Mutation	20	3065212	C	A	30	84
BRCA	BR-0027	BCAS4	SNP	Nonsense_Mutation	20	49458387	C	T	29	62
BRCA	BR-0027	C21orf59	SNP	Splice_site	21	33974284	C	G	32	96
BRCA	BR-0027	ACR	SNP	Missense_Mutation	22	51177706	T	C	55	73
BRCA	BR-0027	TBC1D8B	SNP	Missense_Mutation	23	106064116	G	C	33	57
BRCA	BR-0027	GPR112	SNP	Missense_Mutation	23	135427273	G	A	45	59
BRCA	BR-0027	MAGEA11	SNP	Missense_Mutation	23	148798293	G	A	45	49
BRCA	BR-0027	NHS	SNP	Missense_Mutation	23	17744246	C	G	29	55
BRCA	BR-0027	MAGEB6	SNP	Missense_Mutation	23	26212408	C	G	29	49
BRCA	BR-0027	USP51	SNP	Missense_Mutation	23	55514315	C	T	32	77
BRCA	BR-0027	RAB41	SNP	Missense_Mutation	23	69502089	G	A	37	28
BRCA	BR-0027	BRWD3	SNP	Missense_Mutation	23	79962986	C	T	26	68
BRCA	BR-0027	TNMD	SNP	Missense_Mutation	23	99852567	G	A	45	65
BRCA	BR-0027	NFKBIZ	SNP	Nonsense_Mutation	3	101578192	C	T	29	76
BRCA	BR-0027	COL6A6	SNP	Missense_Mutation	3	130300525	C	A	30	85
BRCA	BR-0027	ATR	SNP	Missense_Mutation	3	142231240	C	G	29	78
BRCA	BR-0027	PIK3CA	SNP	Missense_Mutation	3	178936095	A	G	7	90
BRCA	BR-0027	EPHB3	SNP	Missense_Mutation	3	184294818	C	T	31	99
BRCA	BR-0027	TET2	SNP	Missense_Mutation	4	106155886	G	A	45	63
BRCA	BR-0027	DCLK2	SNP	Silent	4	151153530	G	A	45	60
BRCA	BR-0027	JAKMIP1	SNP	Silent	4	6107215	G	A	38	49
BRCA	BR-0027	ALB	SNP	Missense_Mutation	4	74280843	T	C	59	78
BRCA	BR-0027	WDFY3	SNP	Silent	4	85654670	G	A	37	34
BRCA	BR-0027	HSD17B4	SNP	Silent	5	118814670	T	C	63	50
BRCA	BR-0027	FBN2	SNP	Missense_Mutation	5	127647021	T	C	57	71
BRCA	BR-0027	SLC22A4	SNP	Missense_Mutation	5	131670587	G	C	41	68
BRCA	BR-0027	NDST1	SNP	Missense_Mutation	5	149929247	T	C	58	91
BRCA	BR-0027	C5orf4	SNP	Nonsense_Mutation	5	154200008	C	T	21	58
BRCA	BR-0027	C5orf34	SNP	Missense_Mutation	5	43492852	C	G	30	82
BRCA	BR-0027	GZMA	SNP	Missense_Mutation	5	54404095	G	A	33	59
BRCA	BR-0027	DHX29	SNP	Missense_Mutation	5	54593135	C	G	32	96
BRCA	BR-0027	PIK3R1	SNP	Missense_Mutation	5	67592109	G	A	37	85
BRCA	BR-0027	DSE	SNP	Missense_Mutation	6	116758256	G	C	45	50
BRCA	BR-0027	HIST1H3H	SNP	Missense_Mutation	6	27777855	G	T	42	94
BRCA	BR-0027	MAPK13	SNP	Missense_Mutation	6	36106757	G	A	45	99
BRCA	BR-0027	MUT	SNP	Missense_Mutation	6	49426918	C	T	20	64
BRCA	BR-0027	PGK2	SNP	Missense_Mutation	6	49754019	C	G	32	62
BRCA	BR-0027	THSD7A	SNP	Missense_Mutation	7	11501657	G	C	45	71
BRCA	BR-0027	PTPRZ1	SNP	Missense_Mutation	7	121652099	C	G	32	55
BRCA	BR-0027	LUC7L2	SNP	Missense_Mutation	7	139030269	G	C	33	94
BRCA	BR-0027	CARD11	SNP	Silent	7	2983888	C	T	32	68
BRCA	BR-0027	BBS9	SNP	Missense_Mutation	7	33545228	C	G	32	66
BRCA	BR-0027	SDK1	SNP	Missense_Mutation	7	3681634	C	G	29	58
BRCA	BR-0027	EIF4H	SNP	Missense_Mutation	7	73609175	G	A	47	75
BRCA	BR-0027	ZNF804B	SNP	Missense_Mutation	7	88963467	G	A	41	55
BRCA	BR-0027	PPP1R9A	SNP	Missense_Mutation	7	94919472	C	G	32	48
BRCA	BR-0027	CTHRC1	SNP	Silent	8	104390305	C	T	29	63
BRCA	BR-0027	CSMD3	SNP	Missense_Mutation	8	113988102	C	T	32	88
BRCA	BR-0027	CDCA2	SNP	Missense_Mutation	8	25325825	G	C	45	50
BRCA	BR-0027	HOOK3	SNP	Missense_Mutation	8	42819521	A	G	4	77
BRCA	BR-0027	GDF6	SNP	Missense_Mutation	8	97157708	C	G	29	76
BRCA	BR-0027	TLE1	SNP	Missense_Mutation	9	84199175	C	T	29	100
BRCA	BR-0027	NAA35	SNP	Missense_Mutation	9	88628672	G	C	45	68
BRCA	BR-0028	CD53	SNP	Missense_Mutation	1	111434994	G	T	47	84
BRCA	BR-0028	FLG	SNP	Missense_Mutation	1	152275610	C	T	17	47
BRCA	BR-0028	RAB13	SNP	Missense_Mutation	1	153955263	G	A	38	70
BRCA	BR-0028	SRGAP2	SNP	Missense_Mutation	1	206566221	G	A	39	100
BRCA	BR-0028	C10orf84	SNP	Missense_Mutation	10	120095705	C	T	32	48
BRCA	BR-0028	SYCE1	SNP	Splice_site	10	135372381	G	A	38	20
BRCA	BR-0028	EXPH5	SNP	Missense_Mutation	11	108384337	G	T	47	59
BRCA	BR-0028	GRIN2B	SNP	Silent	12	13717541	G	A	37	42
BRCA	BR-0028	SPERT	SNP	Missense_Mutation	13	46288466	C	T	26	79
BRCA	BR-0028	SYT16	SNP	Missense_Mutation	14	62567163	G	A	40	72
BRCA	BR-0028	XYLT1	SNP	Silent	16	17232350	G	A	38	38
BRCA	BR-0028	ITGAX	SNP	Missense_Mutation	16	31382720	C	T	27	61
BRCA	BR-0028	BPTF	SNP	Silent	17	65924542	C	T	25	48
BRCA	BR-0028	CYP4F12	SNP	Missense_Mutation	19	15794478	C	T	27	57
BRCA	BR-0028	UNC13A	SNP	Silent	19	17752276	G	A	40	47
BRCA	BR-0028	KLK15	SNP	Missense_Mutation	19	51331015	G	C	42	80
BRCA	BR-0028	ZNF530	SNP	Silent	19	58115749	G	A	33	57
BRCA	BR-0028	CDH22	SNP	Silent	20	44856259	C	T	23	43
BRCA	BR-0028	FRMPD4	SNP	Missense_Mutation	23	12725703	A	G	2	88
BRCA	BR-0028	MECP2	SNP	Missense_Mutation	23	153295843	G	A	40	93
BRCA	BR-0028	WNK3	SNP	Missense_Mutation	23	54275768	A	G	14	64
BRCA	BR-0028	HRH1	SNP	Missense_Mutation	3	11301661	C	T	27	49
BRCA	BR-0028	STAB1	SNP	Splice_Site	3	52554307	G	A	40	63
BRCA	BR-0028	LRIG1	SNP	Missense_Mutation	3	66436474	G	A	39	79
BRCA	BR-0028	CDH18	SNP	Missense_Mutation	5	19473754	G	A	40	56
BRCA	BR-0028	DSE	SNP	Missense_Mutation	6	116720539	C	G	26	57
BRCA	BR-0028	ATF6B	SNP	Silent	6	32093955	G	A	44	49
BRCA	BR-0028	KLRG2	SNP	Missense_Mutation	7	139164441	C	A	26	47
BRCA	BR-0028	GPNMB	SNP	Missense_Mutation	7	23309717	C	T	19	52
BRCA	BR-0028	TRPS1	SNP	Silent	8	116426713	C	T	29	72
BRCA	BR-0028	CSMD1	SNP	Missense_Mutation	8	4851928	C	A	21	60
BRCA	BR-0028	TCEA1	SNP	Missense_Mutation	8	54934626	G	T	40	57
BRCA	BR-0028	NANS	SNP	Missense_Mutation	9	100823117	T	G	61	50
BRCA	BR-0030	TMEM79	SNP	Silent	1	156256077	T	C	60	43
BRCA	BR-0030	LPPR5	SNP	Missense_Mutation	1	99387499	C	T	31	95
BRCA	BR-0030	CTNNA3	SNP	Missense_Mutation	10	68040300	A	C	12	57
BRCA	BR-0030	MRGPRX2	SNP	Missense_Mutation	11	19077532	G	A	39	56
BRCA	BR-0030	CLIP1	SNP	Splice_site	12	122812808	C	T	21	85
BRCA	BR-0030	TMEM132D	SNP	Silent	12	129566484	C	T	27	25
BRCA	BR-0030	PIK3C2G	SNP	Missense_Mutation	12	18552692	G	T	43	82
BRCA	BR-0030	SLC15A1	SNP	Splice_Site	13	99373840	C	T	24	100
BRCA	BR-0030	NID2	SNP	Silent	14	52485918	G	A	38	39
BRCA	BR-0030	MAP2K4	SNP	Nonsense_Mutation	17	11984702	C	A	29	98
BRCA	BR-0030	C17orf28	SNP	Missense_Mutation	17	72954477	C	T	27	69
BRCA	BR-0030	KLK8	SNP	Missense_Mutation	19	51503500	C	T	27	61
BRCA	BR-0030	FBN3	SNP	Missense_Mutation	19	8131005	C	T	27	52
BRCA	BR-0030	NDUFA10	SNP	Silent	2	240958052	T	C	56	50
BRCA	BR-0030	CHM	SNP	Splice_Site	23	85134069	C	G	32	78
BRCA	BR-0030	HYAL1	SNP	Missense_Mutation	3	50339816	C	T	23	44
BRCA	BR-0030	ARID1B	SNP	Silent	6	157528257	C	G	24	50
BRCA	BR-0030	FNDC1	SNP	Missense_Mutation	6	159653660	G	A	38	40
BRCA	BR-0030	GTPBP10	SNP	Splice_site	7	89976056	A	G	8	76
BRCA	BR-0030	NSMAF	SNP	Missense_Mutation	8	59500186	A	T	8	47
BRCA	BR-0030	HEMGN	SNP	Missense_Mutation	9	100692418	T	C	64	53
BRCA	BR-0031	ABCC8	SNP	Silent	11	17464764	G	A	37	44
BRCA	BR-0031	RAG1	SNP	Missense_Mutation	11	36597921	G	A	42	59
BRCA	BR-0031	NARS2	SNP	Missense_Mutation	11	78204212	G	C	39	93
BRCA	BR-0031	AEBP2	SNP	Missense_Mutation	12	19615472	A	G	7	90
BRCA	BR-0031	C14orf73	SNP	Missense_Mutation	14	103568521	G	A	38	54
BRCA	BR-0031	CASC4	SNP	Silent	15	44620944	G	A	41	65
BRCA	BR-0031	PDCD7	SNP	Nonsense_Mutation	15	65412100	A	C	13	69
BRCA	BR-0031	CTCF	DNP	Missense_Mutation	16	67662337	GC	CT	46	100
BRCA	BR-0031	DGKE	SNP	Missense_Mutation	17	54912417	C	G	27	63
BRCA	BR-0031	OR10H5	SNP	Missense_Mutation	19	15905637	A	G	14	69
BRCA	BR-0031	HAPLN4	SNP	Missense_Mutation	19	19371865	C	T	23	59
BRCA	BR-0031	CEP250	SNP	Silent	20	34092014	C	T	18	47
BRCA	BR-0031	MECP2	SNP	Silent	23	153297825	G	A	39	29
BRCA	BR-0031	KIAA2022	SNP	Missense_Mutation	23	73963349	C	T	31	81
BRCA	BR-0031	BOC	SNP	Silent	3	112998118	C	T	21	60
BRCA	BR-0031	IL12A	SNP	Missense_Mutation	3	159713312	T	A	52	72
BRCA	BR-0031	CTNNB1	SNP	Nonsense_Mutation	3	41275708	C	T	19	61
BRCA	BR-0031	ETV1	SNP	Missense_Mutation	7	13975351	C	T	28	69
BRCA	BR-0031	SPAG1	SNP	Missense_Mutation	8	101252653	C	T	24	66
BRCA	BR-0031	UNC5D	SNP	Missense_Mutation	8	35624532	G	A	39	79
BRCA	BR-0031	NPBWR1	SNP	Silent	8	53852596	C	T	32	63
BRCA	BR-0032	KCNA10	SNP	Missense_Mutation	1	111060343	C	T	27	99
BRCA	BR-0032	HCN3	SNP	Missense_Mutation	1	155247518	G	A	35	66
BRCA	BR-0032	HNRNPU	SNP	Silent	1	245027574	C	T	24	75
BRCA	BR-0032	KIF26B	SNP	Missense_Mutation	1	245861491	C	T	23	73
BRCA	BR-0032	KIF5B	SNP	Missense_Mutation	10	32320035	T	C	49	79
BRCA	BR-0032	CTR9	SNP	Splice_Site	11	10783602	G	A	44	98
BRCA	BR-0032	FADD	SNP	Silent	11	70052243	G	T	48	51
BRCA	BR-0032	LATS2	SNP	Missense_Mutation	13	21555688	G	A	38	88
BRCA	BR-0032	RPL4	SNP	Silent	15	66795420	G	A	34	48
BRCA	BR-0032	TAT	SNP	Missense_Mutation	16	71606206	C	A	29	100
BRCA	BR-0032	C19orf46	SNP	Missense_Mutation	19	36494149	C	T	21	51
BRCA	BR-0032	ZNF404	SNP	Missense_Mutation	19	44377902	C	G	18	75
BRCA	BR-0032	GPR4	SNP	Silent	19	46094912	C	T	27	49
BRCA	BR-0032	BUB1	SNP	Missense_Mutation	2	111398745	C	T	21	86
BRCA	BR-0032	PECR	SNP	Missense_Mutation	2	216904050	A	G	3	56
BRCA	BR-0032	DOCK10	SNP	Missense_Mutation	2	225666662	A	G	11	87
BRCA	BR-0032	LRRC3	SNP	Silent	21	45876758	C	A	22	51
BRCA	BR-0032	ZNF185	SNP	Silent	23	152113916	C	T	23	40
BRCA	BR-0032	CTPS2	SNP	Missense_Mutation	23	16627796	A	T	1	90
BRCA	BR-0032	NHS	SNP	Missense_Mutation	23	17750475	G	C	36	97
BRCA	BR-0032	OSBPL11	SNP	Missense_Mutation	3	125250776	G	A	40	75
BRCA	BR-0032	CMYA5	SNP	Missense_Mutation	5	79027572	C	T	27	49
BRCA	BR-0032	ACTB	SNP	Missense_Mutation	7	5567676	T	C	62	90
BRCA	BR-0032	ELP3	SNP	Missense_Mutation	8	27989847	G	A	39	96
BRCA	BR-0032	ZNF462	SNP	Silent	9	109690060	C	T	23	49
BRCA	BR-0032	DFNB31	SNP	Silent	9	117266500	T	C	52	53
BRCA	BR-0033	KLHDC7A	SNP	Missense_Mutation	1	18808965	C	T	28	76
BRCA	BR-0033	CFHR1	SNP	Silent	1	196800974	T	C	52	43
BRCA	BR-0033	USH2A	SNP	Missense_Mutation	1	216061845	C	T	32	66
BRCA	BR-0033	WLS	SNP	Splice_Site	1	68659906	T	C	55	35
BRCA	BR-0033	PLCE1	SNP	Missense_Mutation	10	95931110	C	T	24	97
BRCA	BR-0033	MUC5B	SNP	Silent	11	1270668	G	A	36	39
BRCA	BR-0033	METT5D1	SNP	Missense_Mutation	11	28135038	C	G	29	54
BRCA	BR-0033	SDHAF2	SNP	Missense_Mutation	11	61205569	T	G	64	58
BRCA	BR-0033	FOLR3	SNP	Missense_Mutation	11	71850184	G	C	41	90
BRCA	BR-0033	SYTL2	SNP	Silent	11	85431928	G	A	33	65
BRCA	BR-0033	MED13L	SNP	Missense_Mutation	12	116443747	T	A	55	75
BRCA	BR-0033	FMNL3	SNP	Silent	12	50042081	C	T	29	63
BRCA	BR-0033	TSPAN31	SNP	Missense_Mutation	12	58141048	G	A	33	79
BRCA	BR-0033	VTN	SNP	Silent	17	26696415	C	T	29	50
BRCA	BR-0033	TP53	SNP	Missense_Mutation	17	7578190	T	C	49	88
BRCA	BR-0033	DHRS7C	SNP	Missense_Mutation	17	9684833	T	C	49	60
BRCA	BR-0033	ATP5A1	SNP	Silent	18	43666386	G	C	37	47
BRCA	BR-0033	SERPINB13	SNP	Silent	18	61264303	C	T	19	36
BRCA	BR-0033	BRD4	SNP	Nonsense_Mutation	19	15376359	G	A	46	87
BRCA	BR-0033	NFIC	SNP	Missense_Mutation	19	3381872	A	G	9	84
BRCA	BR-0033	TRIP12	SNP	Missense_Mutation	2	230723950	G	T	45	98
BRCA	BR-0033	MAVS	SNP	Missense_Mutation	20	3842994	C	T	24	50
BRCA	BR-0033	PIK3R4	SNP	Missense_Mutation	3	130449185	C	G	29	94
BRCA	BR-0033	P4HTM	SNP	Silent	3	49044229	G	C	42	52
BRCA	BR-0033	KLKB1	SNP	Missense_Mutation	4	187179184	G	C	35	89
BRCA	BR-0033	SPP1	SNP	Missense_Mutation	4	88901231	T	C	51	73
BRCA	BR-0033	ZKSCAN3	SNP	Silent	6	28327663	G	T	41	52
BRCA	BR-0033	HLA-G	SNP	Missense_Mutation	6	29795930	C	G	31	60
BRCA	BR-0033	GHRHR	SNP	Silent	7	31015412	C	G	29	51
BRCA	BR-0033	HECW1	SNP	Missense_Mutation	7	43594307	G	C	37	100
BRCA	BR-0033	GLT6D1	SNP	Missense_Mutation	9	138518009	C	A	17	46
BRCA	BR-0033	GNE	SNP	Missense_Mutation	9	36249285	G	C	33	91
BRCA	BR-0034	CELSR2	SNP	Missense_Mutation	1	109815938	C	T	32	53
BRCA	BR-0034	CD1E	SNP	Missense_Mutation	1	158325172	T	A	52	49
BRCA	BR-0034	NCF2	SNP	Missense_Mutation	1	183532403	G	A	45	63
BRCA	BR-0034	Unknown	SNP	Missense_Mutation	1	1854461	A	C	6	77
BRCA	BR-0034	COL24A1	SNP	Missense_Mutation	1	86591642	C	T	32	66
BRCA	BR-0034	KIAA1217	SNP	Silent	10	24835148	T	G	59	56
BRCA	BR-0034	C10orf71	SNP	Silent	10	50530758	C	G	22	51
BRCA	BR-0034	ETS1	SNP	Silent	11	128350135	G	C	45	82
BRCA	BR-0034	LTBP3	SNP	Silent	11	65308030	C	T	29	53
BRCA	BR-0034	ODZ4	SNP	Silent	11	78482134	C	G	29	54
BRCA	BR-0034	RFX4	SNP	Silent	12	107103171	C	T	19	50
BRCA	BR-0034	C12orf12	SNP	Missense_Mutation	12	91347745	G	C	33	59
BRCA	BR-0034	PTPN21	SNP	Missense_Mutation	14	88946379	C	T	30	75
BRCA	BR-0034	SEMA6D	SNP	Missense_Mutation	15	48056101	C	T	27	86
BRCA	BR-0034	MAN2A2	SNP	Splice_site	15	91454468	G	T	35	90
BRCA	BR-0034	ITGAL	SNP	Missense_Mutation	16	30510662	G	T	38	36
BRCA	BR-0034	RPGRIP1L	SNP	Silent	16	53692338	G	C	41	59
BRCA	BR-0034	SFRS14	SNP	Silent	19	19106051	G	A	39	43
BRCA	BR-0034	ZNF324	SNP	Missense_Mutation	19	58982721	G	A	38	45
BRCA	BR-0034	TTN	SNP	Nonsense_Mutation	2	179428438	G	C	45	79
BRCA	BR-0034	KCNE4	SNP	Missense_Mutation	2	223917909	G	A	41	84
BRCA	BR-0034	SNTA1	SNP	Missense_Mutation	20	32000208	T	G	59	56
BRCA	BR-0034	GPR112	SNP	Silent	23	135455109	G	A	42	39
BRCA	BR-0034	MAGEA4	SNP	Silent	23	151092466	C	G	29	38
BRCA	BR-0034	TMLHE	SNP	Missense_Mutation	23	154754266	C	T	27	63
BRCA	BR-0034	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	BR-0034	FBXW12	SNP	Missense_Mutation	3	48423247	G	C	41	56
BRCA	BR-0034	RGS12	SNP	Missense_Mutation	4	3432152	C	G	30	82
BRCA	BR-0034	GUF1	SNP	Missense_Mutation	4	44691407	G	A	46	96
BRCA	BR-0034	C4orf22	SNP	Missense_Mutation	4	81791204	G	A	37	85
BRCA	BR-0034	HSD17B4	SNP	Silent	5	118835140	A	G	9	52
BRCA	BR-0034	MATR3	SNP	Silent	5	138655079	G	C	45	86
BRCA	BR-0034	ELL2	SNP	Missense_Mutation	5	95242433	C	T	29	98
BRCA	BR-0034	FYN	SNP	Missense_Mutation	6	112029201	G	C	39	88
BRCA	BR-0034	C6orf174	SNP	Missense_Mutation	6	127837511	G	T	48	61
BRCA	BR-0034	MAP7	SNP	Silent	6	136693747	G	A	45	71
BRCA	BR-0034	KIAA1244	SNP	Silent	6	138531148	C	T	29	61
BRCA	BR-0034	HIST1H3B	SNP	Missense_Mutation	6	26031939	C	T	31	98
BRCA	BR-0034	PPP1R10	SNP	Missense_Mutation	6	30571000	G	C	45	59
BRCA	BR-0034	DPY19L1	SNP	Missense_Mutation	7	34997615	G	C	33	71
BRCA	BR-0034	WHSC1L1	SNP	Missense_Mutation	8	38133173	C	T	32	87
BRCA	BR-0036	MASP2	SNP	Missense_Mutation	1	11097835	T	G	52	80
BRCA	BR-0036	ADAM30	SNP	Missense_Mutation	1	120437892	C	A	22	62
BRCA	BR-0036	OR10K2	SNP	Silent	1	158390015	G	A	33	52
BRCA	BR-0036	DDI2	SNP	Missense_Mutation	1	15978310	C	T	28	96
BRCA	BR-0036	BAT2L2	SNP	Silent	1	171501490	T	G	54	58
BRCA	BR-0036	PLEKHA6	SNP	Missense_Mutation	1	204228798	G	A	43	52
BRCA	BR-0036	PHC2	SNP	Silent	1	33837971	C	T	28	73
BRCA	BR-0036	PTPRF	SNP	Missense_Mutation	1	44083455	G	A	38	100
BRCA	BR-0036	FAM107B	SNP	Silent	10	14816300	C	G	21	51
BRCA	BR-0036	ARHGAP21	SNP	Missense_Mutation	10	24896525	C	A	17	51
BRCA	BR-0036	IGSF9B	SNP	Missense_Mutation	11	133790982	C	T	27	84
BRCA	BR-0036	Unknown	SNP	Nonsense_Mutation	12	31280637	G	C	45	47
BRCA	BR-0036	PCDH17	SNP	Missense_Mutation	13	58299284	T	G	59	41
BRCA	BR-0036	CYP46A1	SNP	Missense_Mutation	14	100173922	G	C	33	63
BRCA	BR-0036	SGK269	SNP	Silent	15	77425473	G	C	41	55
BRCA	BR-0036	KIAA1609	SNP	Missense_Mutation	16	84520329	C	T	23	50
BRCA	BR-0036	BRCA1	SNP	Nonsense_Mutation	17	41246468	G	T	34	68
BRCA	BR-0036	BRIP1	SNP	Missense_Mutation	17	59793363	C	T	19	80
BRCA	BR-0036	TP53	SNP	Missense_Mutation	17	7578394	T	C	51	89
BRCA	BR-0036	FAM59A	SNP	Missense_Mutation	18	29867975	C	T	25	100
BRCA	BR-0036	BRD4	SNP	Missense_Mutation	19	15367927	C	T	26	55
BRCA	BR-0036	CD37	SNP	Missense_Mutation	19	49842175	G	C	33	44
BRCA	BR-0036	NLRP13	SNP	Missense_Mutation	19	56424569	C	T	19	50
BRCA	BR-0036	MYO7B	SNP	Splice_site	2	128385947	G	T	43	70
BRCA	BR-0036	ZAK	SNP	Silent	2	174131406	C	G	22	42
BRCA	BR-0036	TTN	SNP	Missense_Mutation	2	179468706	C	A	25	61
BRCA	BR-0036	ALS2	SNP	Missense_Mutation	2	202626039	C	A	28	55
BRCA	BR-0036	ARMC9	SNP	Missense_Mutation	2	232160938	C	A	32	79
BRCA	BR-0036	LOXL3	SNP	Splice_Site	2	74777476	C	G	24	94
BRCA	BR-0036	VAMP5	SNP	Silent	2	85820142	C	T	32	53
BRCA	BR-0036	TGM3	SNP	Splice_site	20	2321080	C	T	27	27
BRCA	BR-0036	TPX2	SNP	Nonsense_Mutation	20	30365329	C	A	29	68
BRCA	BR-0036	CHD6	SNP	Missense_Mutation	20	40065930	C	A	26	79
BRCA	BR-0036	SBF1	SNP	Missense_Mutation	22	50899066	G	A	38	81
BRCA	BR-0036	ARMCX1	SNP	Missense_Mutation	23	100808292	G	A	42	43
BRCA	BR-0036	ACTRT1	SNP	Missense_Mutation	23	127185886	T	A	60	47
BRCA	BR-0036	F8	SNP	Missense_Mutation	23	154124452	T	C	55	70
BRCA	BR-0036	GSPT2	SNP	Missense_Mutation	23	51488469	A	T	8	82
BRCA	BR-0036	DZIP3	SNP	Nonsense_Mutation	3	108394703	A	T	5	69
BRCA	BR-0036	ZFYVE20	SNP	Nonsense_Mutation	3	15126270	A	T	14	53
BRCA	BR-0036	PRICKLE2	SNP	Missense_Mutation	3	64084954	C	T	27	50
BRCA	BR-0036	GRM7	SNP	Missense_Mutation	3	7621027	G	A	38	76
BRCA	BR-0036	ALB	SNP	Splice_site	4	74272476	C	A	20	50
BRCA	BR-0036	SLC6A19	SNP	Missense_Mutation	5	1217044	A	G	2	87
BRCA	BR-0036	MARCH3	SNP	Missense_Mutation	5	126253851	G	T	39	72
BRCA	BR-0036	TAAR5	SNP	Missense_Mutation	6	132909837	C	T	27	53
BRCA	BR-0036	TAAR2	SNP	Missense_Mutation	6	132938516	G	A	41	100
BRCA	BR-0036	ZBTB22	SNP	Missense_Mutation	6	33284347	C	T	27	74
BRCA	BR-0036	DST	SNP	Splice_site	6	56392291	C	G	24	53
BRCA	BR-0036	AOAH	SNP	Splice_site	7	36660433	G	A	39	79
BRCA	BR-0036	DBNL	SNP	Missense_Mutation	7	44089864	G	C	40	62
BRCA	BR-0036	LIMK1	SNP	Missense_Mutation	7	73530228	C	T	23	62
BRCA	BR-0036	PLEC	SNP	Silent	8	144991401	G	A	44	86
BRCA	BR-0036	KCNS2	SNP	Missense_Mutation	8	99440589	G	A	36	67
BRCA	BR-0036	ABL1	SNP	Missense_Mutation	9	133729573	G	A	46	100
BRCA	BR-0037	RAB13	SNP	Missense_Mutation	1	153956033	G	C	45	70
BRCA	BR-0037	DCST1	SNP	Missense_Mutation	1	155011962	G	T	35	80
BRCA	BR-0037	PRRX1	SNP	Silent	1	170695537	G	A	40	52
BRCA	BR-0037	ELK4	SNP	Missense_Mutation	1	205589192	C	T	26	52
BRCA	BR-0037	LYPLAL1	SNP	Missense_Mutation	1	219352513	T	C	51	15
BRCA	BR-0037	AHCTF1	SNP	Missense_Mutation	1	247058007	C	A	30	97
BRCA	BR-0037	OR2T6	SNP	Missense_Mutation	1	248551585	C	A	25	55
BRCA	BR-0037	TP73	SNP	Nonsense_Mutation	1	3643778	G	T	41	92
BRCA	BR-0037	KIAA0562	SNP	Missense_Mutation	1	3750575	A	C	2	50
BRCA	BR-0037	TMEM201	SNP	Silent	1	9657051	G	A	44	63
BRCA	BR-0037	KNDC1	SNP	Missense_Mutation	10	135020410	A	T	4	70
BRCA	BR-0037	CUBN	SNP	Missense_Mutation	10	17113567	C	T	27	63
BRCA	BR-0037	ANK3	SNP	Silent	10	61833946	A	G	12	50
BRCA	BR-0037	LUZP2	SNP	Splice_site	11	25071584	C	G	26	50
BRCA	BR-0037	CRY2	SNP	Missense_Mutation	11	45891654	C	G	28	79
BRCA	BR-0037	P2RX3	SNP	Splice_site	11	57135845	G	T	42	89
BRCA	BR-0037	MARK2	SNP	Silent	11	63670197	G	A	46	54
BRCA	BR-0037	KRT83	SNP	Silent	12	52715099	G	A	47	39
BRCA	BR-0037	OSBPL8	SNP	Missense_Mutation	12	76791497	C	T	30	100
BRCA	BR-0037	HAUS4	SNP	Splice_Site	14	23419522	C	G	18	77
BRCA	BR-0037	MGA	SNP	Missense_Mutation	15	42005418	T	C	55	90
BRCA	BR-0037	CAPN3	SNP	Missense_Mutation	15	42695961	G	A	40	79
BRCA	BR-0037	ZFP106	SNP	Silent	15	42743660	G	A	46	54
BRCA	BR-0037	ZSCAN29	SNP	Missense_Mutation	15	43653659	T	C	51	87
BRCA	BR-0037	SLC28A2	SNP	Missense_Mutation	15	45558310	C	G	18	98
BRCA	BR-0037	NEIL1	SNP	Missense_Mutation	15	75644477	G	C	41	72
BRCA	BR-0037	MEX3B	SNP	Missense_Mutation	15	82336502	C	T	32	98
BRCA	BR-0037	VWA3A	SNP	Missense_Mutation	16	22159506	G	A	40	60
BRCA	BR-0037	ZNF48	SNP	Missense_Mutation	16	30408763	T	G	51	51
BRCA	BR-0037	PLA2G15	SNP	Missense_Mutation	16	68293390	G	A	47	76
BRCA	BR-0037	NUDT7	SNP	Silent	16	77775577	G	T	47	58
BRCA	BR-0037	CENPBD1	SNP	Missense_Mutation	16	90038218	T	C	54	56
BRCA	BR-0037	MED1	SNP	Missense_Mutation	17	37566459	G	T	33	92
BRCA	BR-0037	CCDC45	SNP	Missense_Mutation	17	62533759	G	T	47	86
BRCA	BR-0037	ITGB4	SNP	Silent	17	73745104	C	G	21	55
BRCA	BR-0037	TMEM105	SNP	Missense_Mutation	17	79288225	G	A	39	32
BRCA	BR-0037	LAMA3	SNP	Missense_Mutation	18	21419754	C	A	18	83
BRCA	BR-0037	ASXL3	SNP	Missense_Mutation	18	31324601	T	A	55	69
BRCA	BR-0037	MYO5B	SNP	Missense_Mutation	18	47506837	C	T	29	86
BRCA	BR-0037	DHX34	SNP	Silent	19	47861209	C	T	21	72
BRCA	BR-0037	VRK3	SNP	Silent	19	50519321	C	T	18	53
BRCA	BR-0037	AMMECR1L	SNP	Missense_Mutation	2	128627055	A	T	16	89
BRCA	BR-0037	DTNB	SNP	Splice_site	2	25861962	A	G	6	52
BRCA	BR-0037	TMEM214	SNP	Missense_Mutation	2	27258053	C	G	32	77
BRCA	BR-0037	C2orf53	SNP	Missense_Mutation	2	27360882	G	A	43	46
BRCA	BR-0037	SLC5A6	SNP	Missense_Mutation	2	27424919	C	G	21	93
BRCA	BR-0037	EMILIN3	SNP	Missense_Mutation	20	39991097	C	T	28	61
BRCA	BR-0037	ARFGAP3	SNP	Missense_Mutation	22	43203153	C	T	27	87
BRCA	BR-0037	PKDREJ	SNP	Missense_Mutation	22	46653350	A	G	1	75
BRCA	BR-0037	MOV10L1	SNP	Silent	22	50596512	C	T	26	54
BRCA	BR-0037	ELF4	SNP	Silent	23	129203349	G	A	40	38
BRCA	BR-0037	MXRA5	SNP	Missense_Mutation	23	3242690	G	A	45	61
BRCA	BR-0037	SHROOM2	SNP	Missense_Mutation	23	9914787	G	A	38	93
BRCA	BR-0037	SRPX2	SNP	Splice_site	23	99901322	G	A	47	76
BRCA	BR-0037	SLC6A11	SNP	Splice_site	3	10975852	G	T	39	54
BRCA	BR-0037	TAGLN3	SNP	Missense_Mutation	3	111719701	A	G	3	88
BRCA	BR-0037	AADACL2	SNP	Missense_Mutation	3	151463440	G	A	42	77
BRCA	BR-0037	SLITRK3	SNP	Silent	3	164907809	C	T	24	67
BRCA	BR-0037	LSG1	SNP	Missense_Mutation	3	194369500	C	A	28	88
BRCA	BR-0037	GRM7	SNP	Silent	3	6903528	T	C	63	51
BRCA	BR-0037	ARSJ	SNP	Missense_Mutation	4	114824575	C	A	21	97
BRCA	BR-0037	CCKAR	SNP	Silent	4	26483527	G	A	39	46
BRCA	BR-0037	FAM114A1	SNP	Missense_Mutation	4	38907456	G	C	46	50
BRCA	BR-0037	KLB	SNP	Missense_Mutation	4	39408830	G	C	43	96
BRCA	BR-0037	TMPRSS11A	SNP	Missense_Mutation	4	68780348	C	G	17	94
BRCA	BR-0037	PTPN13	SNP	Missense_Mutation	4	87593576	G	T	46	73
BRCA	BR-0037	FGF1	SNP	Splice_Site	5	141993728	T	G	55	63
BRCA	BR-0037	BASP1	SNP	Silent	5	17275340	C	T	29	50
BRCA	BR-0037	NIPBL	SNP	Silent	5	37024770	A	G	7	55
BRCA	BR-0037	PPWD1	SNP	Missense_Mutation	5	64880896	G	C	47	69
BRCA	BR-0037	THBS4	SNP	Missense_Mutation	5	79372826	G	T	33	100
BRCA	BR-0037	DDR1	SNP	Missense_Mutation	6	30864488	C	G	28	95
BRCA	BR-0037	PNRC1	SNP	Missense_Mutation	6	89793572	A	T	7	70
BRCA	BR-0037	TAS2R5	SNP	Silent	7	141490923	C	G	32	50
BRCA	BR-0037	OSBPL3	SNP	Missense_Mutation	7	24839861	A	G	15	89
BRCA	BR-0037	MYO1G	SNP	Splice_Site	7	45010660	T	G	55	83
BRCA	BR-0037	OXR1	SNP	Missense_Mutation	8	107695482	A	T	2	89
BRCA	BR-0037	CSMD3	SNP	Nonsense_Mutation	8	113668441	G	T	44	52
BRCA	BR-0037	ATAD2	SNP	Missense_Mutation	8	124358376	G	A	41	60
BRCA	BR-0037	DLC1	SNP	Missense_Mutation	8	12957756	G	A	43	99
BRCA	BR-0037	CPNE3	SNP	Missense_Mutation	8	87570608	G	C	33	58
BRCA	BR-0037	PTGR1	SNP	Missense_Mutation	9	114337025	G	T	47	49
BRCA	BR-0038	TAS1R2	SNP	Missense_Mutation	1	19166911	C	T	27	24
BRCA	BR-0038	OR2G2	SNP	Missense_Mutation	1	247752053	G	A	40	56
BRCA	BR-0038	ZNF365	SNP	Silent	10	64136387	T	C	58	43
BRCA	BR-0038	TSPAN31	SNP	Missense_Mutation	12	58140490	A	G	12	53
BRCA	BR-0038	NEURL4	SNP	Missense_Mutation	17	7230319	T	C	60	65
BRCA	BR-0038	INSR	SNP	Missense_Mutation	19	7184546	C	T	25	94
BRCA	BR-0038	SCN1A	SNP	Missense_Mutation	2	166930050	G	A	40	100
BRCA	BR-0038	RAB40A	SNP	Missense_Mutation	23	102755148	C	A	30	60
BRCA	BR-0038	TBC1D8B	SNP	Missense_Mutation	23	106097474	G	A	37	89
BRCA	BR-0038	OTUD6A	SNP	Missense_Mutation	23	69282975	G	A	37	60
BRCA	BR-0038	GPR37	SNP	Missense_Mutation	7	124386691	G	A	40	80
BRCA	BR-0039	KIF26B	SNP	Missense_Mutation	1	245849622	G	A	40	49
BRCA	BR-0039	PODN	SNP	Silent	1	53543383	G	A	39	50
BRCA	BR-0039	SEC31B	SNP	Silent	10	102247838	C	T	21	51
BRCA	BR-0039	ITIH2	SNP	Missense_Mutation	10	7786854	G	A	40	48
BRCA	BR-0039	TAS2R43	SNP	Missense_Mutation	12	11244734	G	C	41	41
BRCA	BR-0039	CGNL1	SNP	Missense_Mutation	15	57835925	A	T	11	92
BRCA	BR-0039	OGFOD1	SNP	Missense_Mutation	16	56501116	A	G	16	52
BRCA	BR-0039	TBKBP1	SNP	Silent	17	45785784	C	T	23	24
BRCA	BR-0039	MPO	SNP	Silent	17	56356964	G	A	38	48
BRCA	BR-0039	LRRN4	SNP	Missense_Mutation	20	6022177	C	T	23	88
BRCA	BR-0039	PCDH19	SNP	Missense_Mutation	23	99661930	C	T	19	100
BRCA	BR-0039	TTBK1	SNP	Missense_Mutation	6	43230732	G	A	44	98
BRCA	BR-0040	ARHGEF11	SNP	Missense_Mutation	1	156910011	C	T	27	78
BRCA	BR-0040	FAM5C	SNP	Missense_Mutation	1	190067323	C	T	19	97
BRCA	BR-0040	ZMYM4	SNP	Silent	1	35857853	A	G	8	44
BRCA	BR-0040	KIAA0319L	SNP	Missense_Mutation	1	35940501	T	C	56	68
BRCA	BR-0040	MLL	SNP	Missense_Mutation	11	118369154	C	T	29	100
BRCA	BR-0040	TUBA1A	SNP	Missense_Mutation	12	49579107	G	A	43	97
BRCA	BR-0040	MYH8	SNP	Silent	17	10293783	G	T	45	56
BRCA	BR-0040	SPATA20	SNP	De_novo_Start_OutOfFrame	17	48625805	C	A	24	94
BRCA	BR-0040	COIL	SNP	Silent	17	55027997	A	C	11	51
BRCA	BR-0040	ACE	SNP	Missense_Mutation	17	61566084	C	T	27	61
BRCA	BR-0040	MFSD11	SNP	Silent	17	74774341	G	A	45	57
BRCA	BR-0040	C17orf68	SNP	Silent	17	8139173	C	A	29	47
BRCA	BR-0040	CCNE1	SNP	Missense_Mutation	19	30313201	C	T	20	100
BRCA	BR-0040	TLR8	SNP	Missense_Mutation	23	12939635	G	C	48	42
BRCA	BR-0040	DIAPH2	SNP	Missense_Mutation	23	96220134	G	T	36	70
BRCA	BR-0040	GALNTL2	SNP	Nonsense_Mutation	3	16264146	G	T	41	54
BRCA	BR-0040	OR5H6	SNP	Missense_Mutation	3	97983498	G	A	48	67
BRCA	BR-0040	TTC37	SNP	Missense_Mutation	5	94860206	C	G	32	81
BRCA	BR-0040	EYS	SNP	Missense_Mutation	6	66063503	C	T	25	63
BRCA	BR-0040	FOXP2	SNP	Missense_Mutation	7	114282656	G	A	36	73
BRCA	BR-0040	C8orf79	SNP	Missense_Mutation	8	12878742	A	G	9	51
BRCA	BR-0040	RHOBTB2	SNP	Splice_Site	8	22862989	G	T	44	94
BRCA	BR-0041	EPC1	SNP	Missense_Mutation	10	32594844	G	A	38	76
BRCA	BR-0041	PTEN	SNP	Missense_Mutation	10	89692871	G	T	48	96
BRCA	BR-0041	CACNA2D4	SNP	Missense_Mutation	12	1995484	C	T	23	99
BRCA	BR-0041	STRA6	SNP	Missense_Mutation	15	74494523	T	C	55	43
BRCA	BR-0041	TTC23	SNP	Missense_Mutation	15	99678288	T	A	64	42
BRCA	BR-0041	MYH2	SNP	Missense_Mutation	17	10451116	G	A	38	47
BRCA	BR-0041	SDK1	SNP	Silent	7	4150342	G	A	35	52
BRCA	BR-0042	FAM40A	SNP	Missense_Mutation	1	110590469	G	T	41	96
BRCA	BR-0042	HSD3B1	SNP	Missense_Mutation	1	120057083	C	G	18	84
BRCA	BR-0042	ADCY10	SNP	Missense_Mutation	1	167868761	A	G	8	72
BRCA	BR-0042	PHRF1	SNP	Silent	11	601611	G	A	40	49
BRCA	BR-0042	CNGA4	SNP	Missense_Mutation	11	6262873	G	A	38	67
BRCA	BR-0042	SLC25A45	SNP	Missense_Mutation	11	65146870	C	A	22	66
BRCA	BR-0042	CREBZF	SNP	Silent	11	85375755	C	T	28	49
BRCA	BR-0042	AKAP3	SNP	Missense_Mutation	12	4736611	C	T	19	32
BRCA	BR-0042	SLC26A10	SNP	Missense_Mutation	12	58017819	C	T	27	64
BRCA	BR-0042	PIGQ	SNP	Splice_Site	16	624764	G	T	44	95
BRCA	BR-0042	CPAMD8	SNP	Missense_Mutation	19	17104284	C	A	30	91
BRCA	BR-0042	SCN3A	SNP	Missense_Mutation	2	165987870	A	G	13	93
BRCA	BR-0042	TTN	SNP	Missense_Mutation	2	179571391	C	T	32	100
BRCA	BR-0042	TRIP12	SNP	Missense_Mutation	2	230652351	C	T	23	96
BRCA	BR-0042	FBLN2	SNP	Missense_Mutation	3	13659650	G	T	43	85
BRCA	BR-0042	SEC24B	SNP	Missense_Mutation	4	110447390	A	G	4	92
BRCA	BR-0042	TACC3	SNP	Missense_Mutation	4	1725166	A	C	13	50
BRCA	BR-0042	TRPC7	SNP	Missense_Mutation	5	135692628	C	T	31	100
BRCA	BR-0042	MAP1B	SNP	Silent	5	71492569	G	A	34	62
BRCA	BR-0042	VNN1	SNP	Missense_Mutation	6	133013475	T	C	62	68
BRCA	BR-0042	MAS1L	SNP	Missense_Mutation	6	29455303	G	A	37	40
BRCA	BR-0042	GPR124	SNP	Silent	8	37693128	G	A	39	77
BRCA	BR-0042	XKR5	SNP	Missense_Mutation	8	6690345	C	T	23	87
BRCA	BR-0042	CNBD1	SNP	Splice_site	8	87917311	G	A	39	32
BRCA	BR-0042	ZNF618	SNP	Silent	9	116812387	G	A	42	52
BRCA	BR-0042	C5	SNP	Missense_Mutation	9	123739055	C	T	32	73
BRCA	BR-0042	KCNV2	SNP	Silent	9	2718651	C	T	19	58
BRCA	BR-0043	HAX1	SNP	Missense_Mutation	1	154247635	G	T	45	87
BRCA	BR-0043	DCST2	SNP	Splice_Site	1	155002718	C	T	32	76
BRCA	BR-0043	ARHGEF11	SNP	Splice_Site	1	156950227	A	T	6	74
BRCA	BR-0043	SMG7	SNP	Missense_Mutation	1	183498597	G	C	39	81
BRCA	BR-0043	RAB3GAP2	SNP	Splice_Site	1	220325108	T	A	55	93
BRCA	BR-0043	RAB3GAP2	SNP	Missense_Mutation	1	220363800	G	A	47	83
BRCA	BR-0043	GALNT2	SNP	Missense_Mutation	1	230314051	C	T	22	66
BRCA	BR-0043	ERO1LB	SNP	Missense_Mutation	1	236389768	G	C	48	76
BRCA	BR-0043	ID3	SNP	Missense_Mutation	1	23885845	C	G	27	70
BRCA	BR-0043	PAFAH2	SNP	Missense_Mutation	1	26314812	C	A	17	52
BRCA	BR-0043	KIAA0319L	SNP	Missense_Mutation	1	35925917	G	C	36	72
BRCA	BR-0043	CLSPN	SNP	Missense_Mutation	1	36216949	C	T	30	64
BRCA	BR-0043	RLF	SNP	Missense_Mutation	1	40704720	A	T	4	91
BRCA	BR-0043	ZNF691	SNP	Missense_Mutation	1	43317359	C	T	27	54
BRCA	BR-0043	C1orf210	SNP	Silent	1	43748585	C	T	32	53
BRCA	BR-0043	BTF3L4	SNP	Missense_Mutation	1	52552389	G	T	48	98
BRCA	BR-0043	C1orf175	SNP	Missense_Mutation	1	55119440	A	C	7	50
BRCA	BR-0043	C1orf87	SNP	Silent	1	60499283	T	C	55	49
BRCA	BR-0043	NEGR1	SNP	Splice_site	1	72748004	A	T	13	62
BRCA	BR-0043	CRYZ	SNP	Missense_Mutation	1	75175906	G	T	34	95
BRCA	BR-0043	USP33	SNP	Missense_Mutation	1	78181479	C	G	29	82
BRCA	BR-0043	ZNF326	SNP	Missense_Mutation	1	90493018	G	A	45	69
BRCA	BR-0043	NEURL	SNP	Missense_Mutation	10	105344893	C	T	26	63
BRCA	BR-0043	SH3PXD2A	SNP	Missense_Mutation	10	105372616	G	T	47	86
BRCA	BR-0043	MKI67	SNP	Missense_Mutation	10	129911813	G	T	35	71
BRCA	BR-0043	ITGA8	SNP	Silent	10	15647728	A	T	15	50
BRCA	BR-0043	NEBL	SNP	Missense_Mutation	10	21158685	G	T	33	75
BRCA	BR-0043	KIF5B	SNP	Silent	10	32306264	G	A	41	50
BRCA	BR-0043	KIF5B	SNP	Missense_Mutation	10	32307480	C	G	32	85
BRCA	BR-0043	AKR1E2	SNP	Missense_Mutation	10	4873002	G	A	48	68
BRCA	BR-0043	OGDHL	SNP	Missense_Mutation	10	50946245	C	T	25	65
BRCA	BR-0043	C10orf18	SNP	Silent	10	5790880	A	T	15	48
BRCA	BR-0043	FAM13C	SNP	Silent	10	61112174	C	T	27	47
BRCA	BR-0043	COL13A1	SNP	Splice_site	10	71688754	A	T	3	64
BRCA	BR-0043	GRID1	DNP	Splice_Site	10	87379792	TG	AA	55	90
BRCA	BR-0043	PPP1R3C	SNP	Missense_Mutation	10	93389871	A	G	4	79
BRCA	BR-0043	CD3D	SNP	Silent	11	118211208	G	C	33	13
BRCA	BR-0043	HEPACAM	SNP	Silent	11	124793274	G	C	35	54
BRCA	BR-0043	BRSK2	DNP	Missense_Mutation	11	1457318	TC	AA	50	60
BRCA	BR-0043	CAPRIN1	SNP	Missense_Mutation	11	34093324	C	A	29	98
BRCA	BR-0043	TRIM6-TRIM34	SNP	Missense_Mutation	11	5631443	C	A	21	65
BRCA	BR-0043	DTX4	DNP	Splice_Site	11	58967247	GT	AA	36	96
BRCA	BR-0043	PHRF1	SNP	Missense_Mutation	11	601646	C	A	17	75
BRCA	BR-0043	VPS37C	SNP	Missense_Mutation	11	60900783	C	G	24	59
BRCA	BR-0043	AHNAK	SNP	Missense_Mutation	11	62291375	A	T	16	86
BRCA	BR-0043	CNGA4	SNP	Missense_Mutation	11	6262986	G	A	41	96
BRCA	BR-0043	C11orf85	SNP	Missense_Mutation	11	64717892	C	T	27	80
BRCA	BR-0043	KDM2A	SNP	Silent	11	67022514	G	A	33	86
BRCA	BR-0043	SAPS3	SNP	Missense_Mutation	11	68343431	C	T	30	82
BRCA	BR-0043	CPT1A	SNP	Missense_Mutation	11	68548122	C	A	26	87
BRCA	BR-0043	OR10A5	SNP	Missense_Mutation	11	6867445	T	A	56	55
BRCA	BR-0043	RPS3	SNP	Missense_Mutation	11	75110606	A	G	16	57
BRCA	BR-0043	OR10A3	SNP	Missense_Mutation	11	7960701	A	G	4	87
BRCA	BR-0043	TRPV4	SNP	Silent	12	110252227	C	T	32	61
BRCA	BR-0043	C12orf51	SNP	Missense_Mutation	12	112666461	G	T	47	96
BRCA	BR-0043	MPHOSPH9	SNP	Nonsense_Mutation	12	123702972	G	T	45	56
BRCA	BR-0043	SCARB1	SNP	Nonsense_Mutation	12	125270835	G	T	45	37
BRCA	BR-0043	CASC1	SNP	Nonsense_Mutation	12	25314062	G	A	40	57
BRCA	BR-0043	ARHGAP9	SNP	Missense_Mutation	12	57870382	C	T	27	76
BRCA	BR-0043	MLF2	SNP	Silent	12	6859111	C	A	26	46
BRCA	BR-0043	TMTC2	SNP	Missense_Mutation	12	83360719	G	C	41	82
BRCA	BR-0043	ATP2B1	SNP	Missense_Mutation	12	90010599	C	T	29	100
BRCA	BR-0043	PCCA	SNP	Missense_Mutation	13	100861645	C	A	17	82
BRCA	BR-0043	NALCN	SNP	Missense_Mutation	13	101756936	A	C	4	93
BRCA	BR-0043	KDELC1	SNP	Nonsense_Mutation	13	103449273	A	T	13	93
BRCA	BR-0043	SACS	SNP	Missense_Mutation	13	23912051	C	T	29	83
BRCA	BR-0043	AKAP11	SNP	Missense_Mutation	13	42874554	G	T	48	85
BRCA	BR-0043	WARS	SNP	Missense_Mutation	14	100813137	C	G	17	100
BRCA	BR-0043	BRF1	SNP	Missense_Mutation	14	105684045	G	T	46	57
BRCA	BR-0043	RNASE10	SNP	Missense_Mutation	14	20979175	A	T	5	55
BRCA	BR-0043	TGM1	SNP	Silent	14	24723375	G	T	47	63
BRCA	BR-0043	RALGAPA1	DNP	Missense_Mutation	14	36244927	TT	AA	64	87
BRCA	BR-0043	FAM179B	SNP	Missense_Mutation	14	45478195	A	T	9	82
BRCA	BR-0043	C14orf138	SNP	Nonsense_Mutation	14	50582872	C	A	29	79
BRCA	BR-0043	PYGL	SNP	Missense_Mutation	14	51378925	C	T	29	100
BRCA	BR-0043	KIAA0586	SNP	Missense_Mutation	14	58924516	C	T	30	67
BRCA	BR-0043	DCAF5	SNP	Missense_Mutation	14	69522324	C	A	21	100
BRCA	BR-0043	SLC10A1	SNP	Missense_Mutation	14	70246069	C	T	29	64
BRCA	BR-0043	RBM25	SNP	Missense_Mutation	14	73538365	C	G	29	81
BRCA	BR-0043	TTLL5	SNP	Missense_Mutation	14	76238192	C	A	17	90
BRCA	BR-0043	SERPINA11	SNP	Splice_Site	14	94914468	C	A	18	93
BRCA	BR-0043	DICER1	SNP	Missense_Mutation	14	95582153	C	A	29	43
BRCA	BR-0043	OR4N4	SNP	Silent	15	22383021	G	A	35	54
BRCA	BR-0043	FBN1	SNP	Missense_Mutation	15	48905236	G	T	44	96
BRCA	BR-0043	HDC	SNP	Missense_Mutation	15	50534887	C	T	24	59
BRCA	BR-0043	GLCE	SNP	Silent	15	69548709	C	T	29	66
BRCA	BR-0043	WDR93	SNP	Missense_Mutation	15	90270498	G	A	45	77
BRCA	BR-0043	ST8SIA2	SNP	Silent	15	93007612	G	A	40	65
BRCA	BR-0043	MCTP2	SNP	Missense_Mutation	15	94857538	G	A	46	57
BRCA	BR-0043	RRN3	SNP	Missense_Mutation	16	15178556	G	A	35	82
BRCA	BR-0043	SMG1	SNP	Nonsense_Mutation	16	18853562	G	T	45	100
BRCA	BR-0043	CP110	SNP	Missense_Mutation	16	19548855	C	G	22	53
BRCA	BR-0043	CORO7	SNP	Missense_Mutation	16	4407193	C	A	20	70
BRCA	BR-0043	PPL	SNP	Nonsense_Mutation	16	4935978	C	T	21	82
BRCA	BR-0043	KIAA0182	SNP	Missense_Mutation	16	85701872	C	A	22	63
BRCA	BR-0043	ABAT	SNP	Missense_Mutation	16	8866640	G	C	41	97
BRCA	BR-0043	KIAA0100	SNP	Missense_Mutation	17	26961958	C	G	30	99
BRCA	BR-0043	GAS2L2	SNP	Silent	17	34073223	G	A	40	34
BRCA	BR-0043	KRT23	SNP	Missense_Mutation	17	39084790	C	T	32	97
BRCA	BR-0043	NBR1	SNP	Missense_Mutation	17	41353785	C	A	29	59
BRCA	BR-0043	KPNB1	SNP	Silent	17	45757958	G	A	41	65
BRCA	BR-0043	RSAD1	SNP	Missense_Mutation	17	48559725	C	G	22	69
BRCA	BR-0043	NLRP1	SNP	Silent	17	5436186	C	G	26	48
BRCA	BR-0043	STRADA	SNP	Missense_Mutation	17	61781704	G	T	42	68
BRCA	BR-0043	CCDC46	SNP	Missense_Mutation	17	63739233	C	T	29	85
BRCA	BR-0043	GLOD4	SNP	Missense_Mutation	17	674662	T	A	63	70
BRCA	BR-0043	SSTR2	SNP	Missense_Mutation	17	71166504	G	T	39	82
BRCA	BR-0043	EIF5A	SNP	Missense_Mutation	17	7213067	G	A	48	91
BRCA	BR-0043	TTYH2	SNP	Missense_Mutation	17	72245207	C	A	21	53
BRCA	BR-0043	ZBTB4	SNP	Missense_Mutation	17	7365675	G	A	41	77
BRCA	BR-0043	TP53	SNP	Missense_Mutation	17	7578271	T	C	51	76
BRCA	BR-0043	SLC38A10	SNP	Missense_Mutation	17	79220723	T	C	55	68
BRCA	BR-0043	PIK3R5	SNP	Silent	17	8790494	G	C	43	55
BRCA	BR-0043	SEH1L	SNP	Silent	18	12987035	A	G	14	62
BRCA	BR-0043	CEP192	SNP	Silent	18	13056510	T	C	55	41
BRCA	BR-0043	METTL4	SNP	Splice_Site	18	2547352	A	T	14	89
BRCA	BR-0043	SMCHD1	SNP	Missense_Mutation	18	2777886	C	G	30	70
BRCA	BR-0043	RNF165	SNP	Missense_Mutation	18	44030730	G	C	45	100
BRCA	BR-0043	GRP	SNP	Missense_Mutation	18	56892927	G	A	41	50
BRCA	BR-0043	TNPO2	SNP	Missense_Mutation	19	12826265	T	A	50	88
BRCA	BR-0043	LPHN1	SNP	Missense_Mutation	19	14272222	G	C	35	90
BRCA	BR-0043	JAK3	SNP	Silent	19	17945414	G	C	39	46
BRCA	BR-0043	ZNF708	SNP	Missense_Mutation	19	21477500	A	C	16	40
BRCA	BR-0043	ZNF536	SNP	Missense_Mutation	19	30936564	G	A	39	97
BRCA	BR-0043	ZNF790	SNP	Missense_Mutation	19	37310353	G	A	36	51
BRCA	BR-0043	ADCK4	SNP	Silent	19	41206349	G	A	34	51
BRCA	BR-0043	ZNF223	SNP	Missense_Mutation	19	44571332	A	T	7	58
BRCA	BR-0043	ZNF226	SNP	Missense_Mutation	19	44679916	G	T	45	50
BRCA	BR-0043	ZNF235	SNP	Nonsense_Mutation	19	44791829	G	A	45	53
BRCA	BR-0043	SYNGR4	SNP	Silent	19	48878934	G	A	38	19
BRCA	BR-0043	TSKS	SNP	Missense_Mutation	19	50247529	G	T	44	53
BRCA	BR-0043	ZNF677	SNP	Missense_Mutation	19	53741665	C	G	20	49
BRCA	BR-0043	LILRB2	SNP	Silent	19	54783911	G	A	43	55
BRCA	BR-0043	SAPS1	SNP	Silent	19	55752950	G	C	41	43
BRCA	BR-0043	ZNF132	SNP	Missense_Mutation	19	58946140	C	A	22	49
BRCA	BR-0043	EMR1	SNP	Splice_Site	19	6921722	A	T	15	58
BRCA	BR-0043	MUC16	SNP	Silent	19	9020019	G	C	35	53
BRCA	BR-0043	SLC9A4	SNP	Splice_Site	2	103125304	A	T	15	85
BRCA	BR-0043	HS6ST1	SNP	Silent	2	129075925	C	A	23	57
BRCA	BR-0043	LRP1B	SNP	Nonsense_Mutation	2	141643896	C	A	29	100
BRCA	BR-0043	DPP4	SNP	Missense_Mutation	2	162894870	G	C	45	73
BRCA	BR-0043	TTC21B	SNP	Missense_Mutation	2	166773886	C	G	24	100
BRCA	BR-0043	TRAK2	SNP	Missense_Mutation	2	202260128	A	C	5	90
BRCA	BR-0043	SLC23A3	SNP	Missense_Mutation	2	220033495	G	A	41	61
BRCA	BR-0043	COL6A3	SNP	Missense_Mutation	2	238277503	G	A	37	55
BRCA	BR-0043	BIRC6	SNP	Missense_Mutation	2	32707647	C	G	29	97
BRCA	BR-0043	REL	SNP	Missense_Mutation	2	61149161	G	A	48	43
BRCA	BR-0043	GKN2	SNP	Splice_Site	2	69173594	T	A	53	70
BRCA	BR-0043	ALMS1	SNP	Missense_Mutation	2	73717716	C	T	24	63
BRCA	BR-0043	SNX5	SNP	Silent	20	17929537	A	T	15	45
BRCA	BR-0043	RALGAPA2	SNP	Missense_Mutation	20	20565593	C	A	20	59
BRCA	BR-0043	ZNF343	SNP	Silent	20	2465210	G	A	35	55
BRCA	BR-0043	DLGAP4	SNP	Missense_Mutation	20	35075113	A	C	11	89
BRCA	BR-0043	SLA2	SNP	Missense_Mutation	20	35243700	C	G	29	73
BRCA	BR-0043	SFRS6	SNP	Missense_Mutation	20	42086693	G	C	41	93
BRCA	BR-0043	WFDC8	SNP	Silent	20	44184359	T	C	62	42
BRCA	BR-0043	MOCS3	SNP	Missense_Mutation	20	49576644	T	A	59	88
BRCA	BR-0043	RBM11	SNP	Nonsense_Mutation	21	15599435	G	T	45	75
BRCA	BR-0043	LOC96610	SNP	Splice_Site	22	23165809	G	A	36	50
BRCA	BR-0043	C22orf42	SNP	Silent	22	32545759	C	T	32	46
BRCA	BR-0043	DRP2	SNP	Missense_Mutation	23	100496767	C	T	23	77
BRCA	BR-0043	ATP2B3	SNP	Silent	23	152815134	T	A	53	51
BRCA	BR-0043	FIGF	SNP	Missense_Mutation	23	15364311	G	C	39	59
BRCA	BR-0043	NHS	SNP	Silent	23	17745676	A	G	3	46
BRCA	BR-0043	MBTPS2	SNP	Missense_Mutation	23	21887697	C	A	25	62
BRCA	BR-0043	MXRA5	SNP	Missense_Mutation	23	3238678	A	C	4	51
BRCA	BR-0043	GPR128	SNP	Missense_Mutation	3	100362172	A	G	2	70
BRCA	BR-0043	DZIP3	SNP	Silent	3	108409735	C	A	21	58
BRCA	BR-0043	GOLGB1	SNP	Nonsense_Mutation	3	121411106	G	A	45	67
BRCA	BR-0043	GOLGB1	SNP	Missense_Mutation	3	121414202	A	G	3	60
BRCA	BR-0043	KALRN	SNP	Missense_Mutation	3	124431870	A	G	9	67
BRCA	BR-0043	PLXND1	SNP	Missense_Mutation	3	129324791	C	T	27	74
BRCA	BR-0043	STAG1	SNP	Silent	3	136060306	C	T	29	53
BRCA	BR-0043	MRAS	SNP	Missense_Mutation	3	138091790	G	C	43	97
BRCA	BR-0043	IGSF10	SNP	Missense_Mutation	3	151163265	C	T	20	41
BRCA	BR-0043	RFTN1	SNP	Nonsense_Mutation	3	16411660	C	T	21	90
BRCA	BR-0043	PLCL2	SNP	Missense_Mutation	3	17053630	C	A	17	100
BRCA	BR-0043	PLD1	SNP	Missense_Mutation	3	171431762	C	G	18	95
BRCA	BR-0043	SPATA16	SNP	Missense_Mutation	3	172643276	T	A	63	75
BRCA	BR-0043	PEX5L	SNP	Silent	3	179592121	C	T	31	52
BRCA	BR-0043	EFHB	SNP	Nonsense_Mutation	3	19940930	A	T	13	52
BRCA	BR-0043	CCR4	SNP	Silent	3	32994977	G	T	48	51
BRCA	BR-0043	DNAH1	SNP	Silent	3	52407059	C	A	25	52
BRCA	BR-0043	ITIH3	SNP	Missense_Mutation	3	52830785	T	A	51	30
BRCA	BR-0043	CACNA2D3	SNP	Missense_Mutation	3	54676258	C	A	21	100
BRCA	BR-0043	ERC2	SNP	Nonsense_Mutation	3	56330084	A	T	13	93
BRCA	BR-0043	USP38	SNP	Silent	4	144127335	A	G	8	36
BRCA	BR-0043	PI4K2B	SNP	Missense_Mutation	4	25278641	A	T	13	54
BRCA	BR-0043	ARAP2	SNP	Missense_Mutation	4	36093559	G	T	45	81
BRCA	BR-0043	PDGFRA	SNP	Missense_Mutation	4	55129872	T	G	61	61
BRCA	BR-0043	AASDH	SNP	Nonsense_Mutation	4	57209041	A	T	14	87
BRCA	BR-0043	SRP72	SNP	Missense_Mutation	4	57366812	C	A	29	67
BRCA	BR-0043	UGT2A1	SNP	Silent	4	70455120	A	T	14	35
BRCA	BR-0043	IL8	SNP	Silent	4	74606393	C	G	23	44
BRCA	BR-0043	FAM190A	DNP	Missense_Mutation	4	91230189	AC	TT	14	89
BRCA	BR-0043	HSD17B4	SNP	Missense_Mutation	5	118824892	G	T	48	41
BRCA	BR-0043	ADAM19	SNP	Missense_Mutation	5	156916157	G	A	45	86
BRCA	BR-0043	NSD1	SNP	Silent	5	176562653	C	A	32	75
BRCA	BR-0043	C5orf35	SNP	Silent	5	56205493	G	A	43	54
BRCA	BR-0043	RGNEF	SNP	Missense_Mutation	5	73045678	A	T	16	52
BRCA	BR-0043	CMYA5	SNP	Missense_Mutation	5	79025549	G	A	45	59
BRCA	BR-0043	RNF217	SNP	Missense_Mutation	6	125404031	A	T	16	82
BRCA	BR-0043	TAB2	SNP	Silent	6	149699264	A	T	14	55
BRCA	BR-0043	RAET1E	SNP	Missense_Mutation	6	150211113	C	G	28	52
BRCA	BR-0043	SLC22A3	SNP	Silent	6	160858188	G	T	39	21
BRCA	BR-0043	TDP2	SNP	Nonsense_Mutation	6	24658843	A	T	13	89
BRCA	BR-0043	OR12D3	SNP	Missense_Mutation	6	29342525	C	G	28	45
BRCA	BR-0043	ABCC10	SNP	Missense_Mutation	6	43410723	C	T	32	83
BRCA	BR-0043	PKHD1	SNP	Silent	6	51618057	T	A	51	35
BRCA	BR-0043	COL21A1	SNP	Missense_Mutation	6	56047337	A	T	14	62
BRCA	BR-0043	PHF3	SNP	Missense_Mutation	6	64423098	C	G	32	63
BRCA	BR-0043	DSP	SNP	Missense_Mutation	6	7575708	C	A	17	84
BRCA	BR-0043	COL12A1	SNP	Missense_Mutation	6	75841672	G	T	48	63
BRCA	BR-0043	GNB2	SNP	Missense_Mutation	7	100275223	T	A	53	86
BRCA	BR-0043	ACHE	SNP	Silent	7	100491638	G	T	47	29
BRCA	BR-0043	IFRD1	SNP	Missense_Mutation	7	112112311	C	T	24	76
BRCA	BR-0043	PPP1R3A	SNP	Missense_Mutation	7	113519622	C	G	32	58
BRCA	BR-0043	ZC3HAV1	SNP	Missense_Mutation	7	138764794	G	C	40	35
BRCA	BR-0043	TAS2R39	SNP	Missense_Mutation	7	142881400	C	A	21	50
BRCA	BR-0043	OR2A1	SNP	Missense_Mutation	7	143929663	A	G	11	56
BRCA	BR-0043	DPP6	SNP	Missense_Mutation	7	154667765	G	A	39	67
BRCA	BR-0043	CREB5	SNP	Silent	7	28843965	G	A	46	60
BRCA	BR-0043	POR	SNP	Missense_Mutation	7	75613071	C	G	18	57
BRCA	BR-0043	CCDC146	SNP	Missense_Mutation	7	76866286	C	T	24	73
BRCA	BR-0043	ZSCAN21	SNP	Missense_Mutation	7	99655492	C	A	29	63
BRCA	BR-0043	FBXO43	SNP	Silent	8	101153018	C	T	32	71
BRCA	BR-0043	DSCC1	SNP	Missense_Mutation	8	120859241	C	T	17	73
BRCA	BR-0043	MTBP	SNP	Missense_Mutation	8	121463510	G	C	45	68
BRCA	BR-0043	MTBP	SNP	Nonsense_Mutation	8	121534900	A	T	13	89
BRCA	BR-0043	CDCA2	SNP	Missense_Mutation	8	25364208	G	A	45	53
BRCA	BR-0043	MYST3	SNP	Missense_Mutation	8	41791065	C	G	28	98
BRCA	BR-0043	ADHFE1	SNP	Missense_Mutation	8	67364198	G	C	41	87
BRCA	BR-0043	ZFHX4	SNP	Missense_Mutation	8	77764415	A	G	12	90
BRCA	BR-0043	NANS	SNP	Missense_Mutation	9	100843349	G	C	47	78
BRCA	BR-0043	OR1J2	SNP	Missense_Mutation	9	125273354	A	T	12	75
BRCA	BR-0043	SPTAN1	SNP	Missense_Mutation	9	131339689	C	T	17	69
BRCA	BR-0043	RAPGEF1	SNP	Silent	9	134454962	C	T	24	76
BRCA	BR-0043	C9orf9	SNP	Missense_Mutation	9	135763754	C	G	22	86
BRCA	BR-0043	PSIP1	SNP	Nonsense_Mutation	9	15490112	C	A	24	88
BRCA	BR-0043	DNAJA1	SNP	Nonsense_Mutation	9	33034298	T	A	61	86
BRCA	BR-0043	NFX1	SNP	Missense_Mutation	9	33294546	C	G	18	61
BRCA	BR-0043	UNC13B	SNP	Missense_Mutation	9	35377541	G	A	45	100
BRCA	BR-0044	CGN	SNP	Missense_Mutation	1	151507579	C	A	17	68
BRCA	BR-0044	FLG	SNP	Missense_Mutation	1	152276900	G	T	48	57
BRCA	BR-0044	ILF2	SNP	Missense_Mutation	1	153640948	G	C	34	76
BRCA	BR-0044	KIAA1804	SNP	Missense_Mutation	1	233497898	G	A	37	99
BRCA	BR-0044	KMO	SNP	Silent	1	241713047	C	T	24	51
BRCA	BR-0044	ZDHHC18	SNP	Missense_Mutation	1	27159092	C	A	17	83
BRCA	BR-0044	MSH4	SNP	Missense_Mutation	1	76276440	G	A	48	95
BRCA	BR-0044	DDX55	SNP	Missense_Mutation	12	124099831	T	A	49	51
BRCA	BR-0044	C1S	SNP	Silent	12	7175782	C	T	19	30
BRCA	BR-0044	MTA1	SNP	Splice_site	14	105924709	G	T	39	95
BRCA	BR-0044	SRCAP	SNP	Silent	16	30718901	C	T	25	47
BRCA	BR-0044	P2RX1	SNP	Silent	17	3819400	G	A	41	51
BRCA	BR-0044	LILRB5	SNP	Silent	19	54756357	C	G	25	48
BRCA	BR-0044	FOXA2	SNP	Missense_Mutation	20	22563170	G	T	41	97
BRCA	BR-0044	N6AMT1	SNP	Missense_Mutation	21	30252217	G	A	43	86
BRCA	BR-0044	SCARF2	SNP	Silent	22	20784102	C	T	27	46
BRCA	BR-0044	C1GALT1C1	SNP	Missense_Mutation	23	119760819	C	A	31	55
BRCA	BR-0044	TKTL1	SNP	Missense_Mutation	23	153541072	A	G	2	50
BRCA	BR-0044	CNKSR2	SNP	Missense_Mutation	23	21550106	A	T	3	60
BRCA	BR-0044	ARSD	SNP	Missense_Mutation	23	2843708	G	A	38	68
BRCA	BR-0044	GRIP2	SNP	Missense_Mutation	3	14559292	C	A	30	88
BRCA	BR-0044	COL7A1	SNP	Silent	3	48629233	C	T	21	72
BRCA	BR-0044	PDS5A	SNP	Missense_Mutation	4	39918720	A	T	16	93
BRCA	BR-0044	HIST1H2BD	SNP	Missense_Mutation	6	26158426	C	G	26	67
BRCA	BR-0044	COL1A2	SNP	Missense_Mutation	7	94057679	G	A	37	78
BRCA	BR-0044	FAM91A1	SNP	Missense_Mutation	8	124780997	C	T	26	92
BRCA	BR-0045	TIE1	SNP	Missense_Mutation	1	43772532	A	G	10	69
BRCA	BR-0045	FAM124A	SNP	Silent	13	51825974	G	A	38	34
BRCA	BR-0045	WHAMM	SNP	Missense_Mutation	15	83495168	T	C	59	85
BRCA	BR-0045	CHD2	SNP	Missense_Mutation	15	93547935	T	C	52	89
BRCA	BR-0045	TP53	SNP	Missense_Mutation	17	7578442	T	C	57	69
BRCA	BR-0045	CYP4F11	SNP	Missense_Mutation	19	16035680	G	A	38	56
BRCA	BR-0045	COL4A4	SNP	Missense_Mutation	2	227877004	C	T	30	80
BRCA	BR-0045	TBC1D23	SNP	Splice_site	3	100034943	G	A	42	53
BRCA	BR-0045	ADCY5	SNP	Silent	3	123046525	G	A	40	49
BRCA	BR-0045	ERBB2IP	SNP	Silent	5	65370923	C	A	22	74
BRCA	BR-0045	SYNJ2	SNP	Missense_Mutation	6	158516698	A	G	4	66
BRCA	BR-0046	HMCN1	SNP	Silent	1	185897792	C	T	19	47
BRCA	BR-0046	NUAK1	SNP	Missense_Mutation	12	106460807	C	A	30	99
BRCA	BR-0046	CPS1	SNP	Silent	2	211541854	T	C	52	54
BRCA	BR-0046	DEF6	SNP	Missense_Mutation	6	35280248	G	A	42	81
BRCA	BR-0046	LRP12	SNP	Missense_Mutation	8	105521275	C	G	31	69
BRCA	BR-0047	RAPGEF3	SNP	Missense_Mutation	12	48137843	G	C	36	42
BRCA	BR-0047	MYO1A	SNP	Missense_Mutation	12	57434971	T	G	54	54
BRCA	BR-0047	SNRPA1	SNP	Missense_Mutation	15	101833323	G	A	34	93
BRCA	BR-0047	NLRP4	SNP	Silent	19	56369935	C	G	22	68
BRCA	BR-0047	ZNF148	SNP	Missense_Mutation	3	124951810	A	G	2	87
BRCA	BR-0047	MCF2L2	SNP	Silent	3	182910812	C	T	23	46
BRCA	BR-0047	SRF	SNP	Silent	6	43146042	C	T	23	37
BRCA	BR-0047	DAPK1	SNP	Missense_Mutation	9	90321197	C	T	27	70
BRCA	BR-0048	PIGM	SNP	Silent	1	160000744	C	T	29	49
BRCA	BR-0048	HMCN1	SNP	Missense_Mutation	1	186113680	C	T	27	99
BRCA	BR-0048	PLEKHA1	SNP	Missense_Mutation	10	124152759	G	C	33	100
BRCA	BR-0048	TMEM151A	SNP	Silent	11	66062542	C	T	18	53
BRCA	BR-0048	RIMKLB	SNP	Missense_Mutation	12	8906546	G	A	38	91
BRCA	BR-0048	PROX2	SNP	Missense_Mutation	14	75329255	G	A	46	48
BRCA	BR-0048	NCOR1	SNP	Nonsense_Mutation	17	16004664	G	A	45	71
BRCA	BR-0048	GRIN2D	SNP	Silent	19	48908065	G	A	35	63
BRCA	BR-0048	AIFM1	SNP	Splice_site	23	129283446	G	C	33	63
BRCA	BR-0048	IL2RG	SNP	Missense_Mutation	23	70329105	T	A	52	46
BRCA	BR-0048	MECOM	SNP	Missense_Mutation	3	168834066	G	C	41	76
BRCA	BR-0048	PRDM5	SNP	Missense_Mutation	4	121739647	G	C	45	74
BRCA	BR-0048	PPARGC1A	SNP	Nonsense_Mutation	4	23814420	G	A	38	97
BRCA	BR-0048	ADAMTS3	SNP	Silent	4	73161418	C	T	31	43
BRCA	BR-0048	MYLK4	SNP	Missense_Mutation	6	2685615	C	T	19	61
BRCA	BR-0048	MAP3K7	SNP	Missense_Mutation	6	91281489	G	A	34	100
BRCA	BR-0048	ATAD2	SNP	Silent	8	124381366	A	G	11	73
BRCA	BR-0048	LPAR1	SNP	Missense_Mutation	9	113637797	G	C	44	61
BRCA	BR-0048	PAPPA	SNP	Missense_Mutation	9	118997852	C	T	23	89
BRCA	BR-0049	MTOR	SNP	Missense_Mutation	1	11188153	T	C	61	90
BRCA	BR-0049	PFKP	SNP	Nonsense_Mutation	10	3155342	C	T	27	78
BRCA	BR-0049	MYBPC3	SNP	Missense_Mutation	11	47373032	C	T	23	75
BRCA	BR-0049	OR8K1	SNP	Missense_Mutation	11	56113775	G	A	48	53
BRCA	BR-0049	SGPP1	SNP	Missense_Mutation	14	64152927	G	A	46	65
BRCA	BR-0049	PRKCB	SNP	Missense_Mutation	16	23847575	C	T	23	52
BRCA	BR-0049	TECR	SNP	Missense_Mutation	19	14675031	C	T	27	71
BRCA	BR-0049	NR2C2AP	SNP	Silent	19	19313663	A	T	11	41
BRCA	BR-0049	VASP	SNP	Nonsense_Mutation	19	46026024	C	T	31	57
BRCA	BR-0049	MAP4K4	SNP	Silent	2	102481445	A	C	6	47
BRCA	BR-0049	ZNF518B	SNP	Missense_Mutation	4	10445956	C	T	27	63
BRCA	BR-0049	CTNND2	SNP	Missense_Mutation	5	11022918	C	T	31	86
BRCA	BR-0049	SLC25A2	SNP	Silent	5	140683316	C	T	19	50
BRCA	BR-0049	HIST1H4B	SNP	Silent	6	26027388	G	A	47	69
BRCA	BR-0049	PHF14	SNP	Missense_Mutation	7	11150987	T	C	51	92
BRCA	BR-0049	NEUROD6	SNP	Silent	7	31377935	G	A	40	52
BRCA	BR-0050	HAO2	SNP	Silent	1	119936457	G	A	42	51
BRCA	BR-0050	HRNR	SNP	Silent	1	152186043	A	G	3	52
BRCA	BR-0050	MTF1	SNP	Missense_Mutation	1	38322978	A	G	4	90
BRCA	BR-0050	RNF220	SNP	Missense_Mutation	1	45101709	G	C	42	94
BRCA	BR-0050	C11orf84	SNP	Missense_Mutation	11	63585444	C	G	23	59
BRCA	BR-0050	VWF	SNP	Missense_Mutation	12	6184683	G	T	44	72
BRCA	BR-0050	MYCBP2	SNP	Missense_Mutation	13	77631195	A	T	7	75
BRCA	BR-0050	GZMH	SNP	Silent	14	25078790	A	G	9	48
BRCA	BR-0050	CHSY1	SNP	Missense_Mutation	15	101719026	C	T	31	100
BRCA	BR-0050	USP10	SNP	Silent	16	84779065	C	T	25	50
BRCA	BR-0050	MYO18A	SNP	Missense_Mutation	17	27448187	G	T	44	84
BRCA	BR-0050	ZZEF1	SNP	Silent	17	3989946	C	T	31	31
BRCA	BR-0050	PLD2	SNP	Missense_Mutation	17	4722092	C	T	29	87
BRCA	BR-0050	C17orf60	SNP	Splice_site	17	62461656	C	G	25	56
BRCA	BR-0050	GALK1	SNP	Missense_Mutation	17	73754633	C	T	19	94
BRCA	BR-0050	TP53	SNP	Nonsense_Mutation	17	7578431	G	A	48	84
BRCA	BR-0050	CYP4F12	SNP	Missense_Mutation	19	15791315	G	T	46	48
BRCA	BR-0050	C19orf29	SNP	Missense_Mutation	19	3620743	T	C	63	73
BRCA	BR-0050	ZNF226	SNP	Missense_Mutation	19	44679743	G	T	45	72
BRCA	BR-0050	RPL28	SNP	Missense_Mutation	19	55898112	G	A	41	53
BRCA	BR-0050	SLC9A4	SNP	Missense_Mutation	2	103121870	G	A	37	87
BRCA	BR-0050	MARCH7	SNP	Missense_Mutation	2	160599666	A	G	7	68
BRCA	BR-0050	SCN3A	SNP	Missense_Mutation	2	165984397	T	C	58	77
BRCA	BR-0050	TTN	SNP	Missense_Mutation	2	179628969	G	C	39	98
BRCA	BR-0050	DTNB	SNP	Missense_Mutation	2	25611118	T	G	58	88
BRCA	BR-0050	EHD3	SNP	Silent	2	31467269	G	A	33	65
BRCA	BR-0050	DYNC2LI1	SNP	Splice_site	2	44036905	G	T	45	58
BRCA	BR-0050	GZF1	SNP	Splice_Site	20	23347735	G	A	44	98
BRCA	BR-0050	MYO18B	SNP	Silent	22	26193997	C	T	27	33
BRCA	BR-0050	GLUD2	SNP	Silent	23	120181700	C	T	27	55
BRCA	BR-0050	ABHD10	SNP	Missense_Mutation	3	111698033	C	T	27	53
BRCA	BR-0050	STXBP5L	SNP	Missense_Mutation	3	120833858	C	T	32	94
BRCA	BR-0050	WDFY3	SNP	Nonsense_Mutation	4	85722828	G	A	45	100
BRCA	BR-0050	AFF1	SNP	Missense_Mutation	4	88026812	G	A	36	91
BRCA	BR-0050	ADAP1	SNP	Missense_Mutation	7	944762	A	T	2	87
BRCA	BR-0050	AZIN1	SNP	Missense_Mutation	8	103842081	C	T	29	88
BRCA	BR-0050	RHPN1	SNP	Missense_Mutation	8	144463459	A	G	11	72
BRCA	BR-0050	BAT2L1	SNP	Missense_Mutation	9	134305540	T	A	50	90
BRCA	BR-0050	REXO4	SNP	Missense_Mutation	9	136277467	C	A	30	93
BRCA	BR-0050	KIAA1797	SNP	Nonsense_Mutation	9	20993263	G	A	42	87
BRCA	BR-0050	KIAA1045	SNP	Missense_Mutation	9	34976642	T	G	60	83
BRCA	BR-0051	VCL	SNP	Splice_site	10	75830841	G	T	35	97
BRCA	BR-0051	ELMOD1	SNP	Missense_Mutation	11	107506439	G	A	40	97
BRCA	BR-0051	KLRK1	SNP	Missense_Mutation	12	10539532	G	A	41	39
BRCA	BR-0051	EP400	SNP	Silent	12	132508458	C	G	29	63
BRCA	BR-0051	FGF23	SNP	Silent	12	4481850	G	A	45	62
BRCA	BR-0051	PIP4K2C	SNP	Silent	12	57994194	C	T	32	53
BRCA	BR-0051	SPATA13	SNP	Missense_Mutation	13	24858395	C	A	28	64
BRCA	BR-0051	KIAA1609	SNP	Silent	16	84513543	G	C	41	52
BRCA	BR-0051	TP53	SNP	Splice_Site	17	7578291	T	A	53	81
BRCA	BR-0051	PPAN-P2RY11	SNP	Missense_Mutation	19	10224579	A	G	16	65
BRCA	BR-0051	TNFSF9	SNP	Silent	19	6534903	C	T	31	40
BRCA	BR-0051	CASS4	SNP	Missense_Mutation	20	54987534	T	C	51	38
BRCA	BR-0051	RRP1B	SNP	Missense_Mutation	21	45113193	T	C	54	51
BRCA	BR-0051	KCNIP4	SNP	Splice_site	4	20760446	C	T	30	98
BRCA	BR-0051	UBAP2	SNP	Missense_Mutation	9	33960827	T	G	56	69
BRCA	BR-0052	AVPR1B	SNP	Silent	1	206225061	C	A	32	69
BRCA	BR-0052	RHD	SNP	Missense_Mutation	1	25599144	G	A	38	26
BRCA	BR-0052	ARID1A	SNP	Missense_Mutation	1	27101109	T	A	58	89
BRCA	BR-0052	DPH2	SNP	Missense_Mutation	1	44437418	C	T	23	64
BRCA	BR-0052	MMP7	SNP	Silent	11	102398262	C	T	27	39
BRCA	BR-0052	FAM118B	SNP	Nonsense_Mutation	11	126126603	A	T	11	64
BRCA	BR-0052	PTPRB	SNP	Missense_Mutation	12	70946788	A	C	7	55
BRCA	BR-0052	AHNAK2	SNP	Missense_Mutation	14	105408166	C	T	26	51
BRCA	BR-0052	HECTD1	SNP	Missense_Mutation	14	31582605	T	A	64	72
BRCA	BR-0052	AKAP6	SNP	Missense_Mutation	14	33292886	A	G	12	48
BRCA	BR-0052	ST6GALNAC1	SNP	Missense_Mutation	17	74622865	G	T	38	46
BRCA	BR-0052	WDR45L	SNP	Splice_Site	17	80601900	C	G	24	91
BRCA	BR-0052	RYR1	SNP	Silent	19	38939013	G	A	46	50
BRCA	BR-0052	ZNF222	SNP	Missense_Mutation	19	44536383	T	C	54	54
BRCA	BR-0052	CTCFL	SNP	Nonsense_Mutation	20	56087753	G	C	36	98
BRCA	BR-0052	PTK6	SNP	Silent	20	62161576	G	A	33	59
BRCA	BR-0052	RBM10	SNP	Missense_Mutation	23	47030445	C	G	22	59
BRCA	BR-0052	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-0052	CDH10	SNP	Missense_Mutation	5	24593440	G	A	40	77
BRCA	BR-0052	RAI14	SNP	Missense_Mutation	5	34830802	G	C	41	98
BRCA	BR-0052	PLK2	SNP	Missense_Mutation	5	57751187	A	C	8	52
BRCA	BR-0052	SRF	SNP	Splice_site	6	43146620	G	A	35	73
BRCA	BR-0052	HOXA3	SNP	Silent	7	27148179	G	A	44	73
BRCA	BR-0052	PPP2R2A	SNP	Missense_Mutation	8	26218584	T	C	52	92
BRCA	BR-0052	EHMT1	SNP	Silent	9	140622944	G	A	33	55
BRCA	BR-0052	SIGMAR1	SNP	Missense_Mutation	9	34635654	G	A	44	92
BRCA	BR-0054	HIST2H2BE	SNP	Missense_Mutation	1	149857974	G	C	38	100
BRCA	BR-0054	IGSF9	SNP	Silent	1	159906583	G	A	41	58
BRCA	BR-0054	CD59	SNP	Splice_site	11	33743991	T	C	52	67
BRCA	BR-0054	TALDO1	SNP	Missense_Mutation	11	764389	C	T	23	71
BRCA	BR-0054	ALG10B	SNP	Missense_Mutation	12	38714525	A	C	1	63
BRCA	BR-0054	NEO1	SNP	Missense_Mutation	15	73590797	C	T	26	81
BRCA	BR-0054	KIF18B	SNP	Silent	17	43005756	G	A	48	52
BRCA	BR-0054	FSD1	SNP	Missense_Mutation	19	4318904	G	A	40	94
BRCA	BR-0054	SH3RF3	SNP	Silent	2	110015348	C	T	23	38
BRCA	BR-0054	CASP8	SNP	Silent	2	202123029	C	T	24	36
BRCA	BR-0054	ITSN2	SNP	Missense_Mutation	2	24432698	T	C	52	85
BRCA	BR-0054	SOS1	SNP	Missense_Mutation	2	39278364	T	C	51	76
BRCA	BR-0054	CPZ	SNP	Silent	4	8605824	C	T	19	50
BRCA	BR-0054	DNAH5	SNP	Silent	5	13919437	G	A	34	59
BRCA	BR-0054	CCNB1	SNP	Splice_site	5	68463108	A	G	7	55
BRCA	BR-0054	NAPEPLD	SNP	Silent	7	102760248	G	A	39	34
BRCA	BR-0054	LOXL2	SNP	Missense_Mutation	8	23225746	G	A	39	99
BRCA	BR-0054	CCIN	SNP	Silent	9	36170534	C	T	24	47
BRCA	BR-0060	S1PR1	SNP	Missense_Mutation	1	101705100	C	T	27	46
BRCA	BR-0060	TAS1R3	SNP	Silent	1	1267952	C	T	18	55
BRCA	BR-0060	SYT11	SNP	Silent	1	155851143	C	T	31	44
BRCA	BR-0060	FGF8	SNP	Missense_Mutation	10	103531244	G	T	48	60
BRCA	BR-0060	RET	SNP	Silent	10	43623573	G	A	37	81
BRCA	BR-0060	FAM21C	SNP	Silent	10	46280018	C	T	27	49
BRCA	BR-0060	RUFY2	SNP	Missense_Mutation	10	70164505	C	T	27	97
BRCA	BR-0060	KIAA1274	SNP	Silent	10	72300881	C	T	22	50
BRCA	BR-0060	ATM	SNP	Missense_Mutation	11	108201042	A	G	16	88
BRCA	BR-0060	OR5D18	SNP	Missense_Mutation	11	55587541	G	C	44	50
BRCA	BR-0060	HNRNPA1	SNP	Missense_Mutation	12	54675282	G	A	48	93
BRCA	BR-0060	CCT2	SNP	Missense_Mutation	12	69991825	G	C	41	97
BRCA	BR-0060	BEST3	SNP	Silent	12	70049505	G	T	38	49
BRCA	BR-0060	ATP11A	SNP	Silent	13	113514699	C	T	19	47
BRCA	BR-0060	RNASE4	SNP	Missense_Mutation	14	21167826	G	T	46	79
BRCA	BR-0060	KIAA0317	SNP	Missense_Mutation	14	75136426	G	A	35	86
BRCA	BR-0060	OTUD7A	SNP	Missense_Mutation	15	31776486	C	T	27	50
BRCA	BR-0060	RYR3	SNP	Missense_Mutation	15	34065792	C	T	19	89
BRCA	BR-0060	DUOX2	SNP	Silent	15	45398790	G	A	48	74
BRCA	BR-0060	ZNF592	SNP	Missense_Mutation	15	85341572	T	A	51	72
BRCA	BR-0060	MEFV	SNP	Missense_Mutation	16	3304268	G	C	48	45
BRCA	BR-0060	GAS2L2	SNP	Missense_Mutation	17	34074081	G	A	40	44
BRCA	BR-0060	CDK12	SNP	Missense_Mutation	17	37650909	C	G	17	97
BRCA	BR-0060	ERBB2	SNP	Missense_Mutation	17	37884131	G	T	41	52
BRCA	BR-0060	BZRAP1	SNP	Silent	17	56387418	C	T	24	48
BRCA	BR-0060	BZRAP1	SNP	Silent	17	56388506	C	T	24	61
BRCA	BR-0060	BZRAP1	SNP	Missense_Mutation	17	56389075	C	T	29	83
BRCA	BR-0060	BZRAP1	SNP	Silent	17	56389296	C	T	21	35
BRCA	BR-0060	BZRAP1	SNP	Missense_Mutation	17	56389582	C	T	28	64
BRCA	BR-0060	BZRAP1	SNP	Silent	17	56389701	C	G	29	61
BRCA	BR-0060	BZRAP1	SNP	Silent	17	56404143	C	T	29	66
BRCA	BR-0060	CCDC45	SNP	Silent	17	62518977	C	T	23	33
BRCA	BR-0060	ACADVL	SNP	Splice_site	17	7126452	G	A	44	76
BRCA	BR-0060	MGAT5B	SNP	Splice_site	17	74922812	C	T	31	93
BRCA	BR-0060	TP53	SNP	Missense_Mutation	17	7577565	T	C	60	86
BRCA	BR-0060	SLC39A6	SNP	Missense_Mutation	18	33689582	T	C	61	67
BRCA	BR-0060	CDH20	SNP	Silent	18	59158014	C	T	18	41
BRCA	BR-0060	CTCFL	SNP	Missense_Mutation	20	56098735	G	T	36	43
BRCA	BR-0060	NFKBIZ	SNP	Silent	3	101576195	A	G	4	68
BRCA	BR-0060	ACAD9	SNP	Missense_Mutation	3	128627086	G	A	38	66
BRCA	BR-0060	PIK3R4	SNP	Nonsense_Mutation	3	130422673	G	A	37	100
BRCA	BR-0060	IGSF10	SNP	Silent	3	151164955	G	A	46	48
BRCA	BR-0060	SI	SNP	Splice_site	3	164697220	T	C	53	68
BRCA	BR-0060	CYP8B1	SNP	Missense_Mutation	3	42916608	C	T	19	48
BRCA	BR-0060	ACTR8	SNP	Silent	3	53911280	C	T	31	44
BRCA	BR-0060	METAP1	SNP	Missense_Mutation	4	99982333	T	A	51	52
BRCA	BR-0060	AHRR	SNP	Missense_Mutation	5	354005	C	T	23	51
BRCA	BR-0060	SLC1A3	SNP	Missense_Mutation	5	36671149	G	T	36	83
BRCA	BR-0060	LIFR	SNP	Nonsense_Mutation	5	38504116	C	A	29	55
BRCA	BR-0060	SYTL3	SNP	Silent	6	159129390	C	A	29	56
BRCA	BR-0060	OR2B6	SNP	Missense_Mutation	6	27925130	A	G	10	60
BRCA	BR-0060	GIMAP7	SNP	Missense_Mutation	7	150217127	G	T	36	75
BRCA	BR-0060	IL6	SNP	Silent	7	22769321	C	T	17	42
BRCA	BR-0060	UBR5	SNP	Missense_Mutation	8	103301757	C	T	24	100
BRCA	BR-0060	ROD1	SNP	Silent	9	115038286	C	T	30	81
BRCA	BR-0060	DAB2IP	SNP	Missense_Mutation	9	124535071	G	A	38	73
BRCA	BR-0060	UNC13B	SNP	Silent	9	35396859	A	G	14	50
BRCA	BR-0060	GBA2	SNP	Missense_Mutation	9	35739736	C	T	24	88
BRCA	BR-0064	H2AFX	SNP	Missense_Mutation	11	118965936	C	G	30	100
BRCA	BR-0064	MLL2	SNP	Silent	12	49435483	C	T	24	84
BRCA	BR-0064	SV2B	SNP	Missense_Mutation	15	91769693	C	T	27	84
BRCA	BR-0064	IL1R2	SNP	Missense_Mutation	2	102641126	C	T	19	54
BRCA	BR-0064	CHD6	SNP	Nonsense_Mutation	20	40141556	C	A	30	97
BRCA	BR-0064	CPT1B	SNP	Missense_Mutation	22	51015039	G	C	46	52
BRCA	BR-0064	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	BR-0064	OR2B6	SNP	Missense_Mutation	6	27925131	C	T	18	62
BRCA	BR-0064	COL12A1	SNP	Nonsense_Mutation	6	75799829	G	A	40	59
BRCA	BR-0064	ANLN	SNP	Missense_Mutation	7	36462263	T	C	52	66
BRCA	BR-0067	BCL2L15	SNP	Missense_Mutation	1	114429245	C	T	21	57
BRCA	BR-0067	NPR1	SNP	Missense_Mutation	1	153658326	C	A	30	60
BRCA	BR-0067	ZNF672	SNP	Missense_Mutation	1	249142481	G	C	33	61
BRCA	BR-0067	PUM1	SNP	Silent	1	31437585	T	A	55	55
BRCA	BR-0067	GRIK3	SNP	Missense_Mutation	1	37324849	C	T	29	100
BRCA	BR-0067	HIVEP3	SNP	Silent	1	42048909	T	C	52	50
BRCA	BR-0067	NASP	SNP	Missense_Mutation	1	46083152	G	C	33	57
BRCA	BR-0067	NASP	SNP	Missense_Mutation	1	46083738	G	C	33	78
BRCA	BR-0067	TMED5	SNP	Missense_Mutation	1	93645642	G	T	43	56
BRCA	BR-0067	ABCC2	SNP	Silent	10	101572826	C	T	31	48
BRCA	BR-0067	PDZD7	SNP	Missense_Mutation	10	102781680	C	T	31	97
BRCA	BR-0067	BAMBI	SNP	Silent	10	28970464	T	C	59	38
BRCA	BR-0067	ZNF438	SNP	Missense_Mutation	10	31137545	C	G	29	94
BRCA	BR-0067	PCDH15	SNP	Nonsense_Mutation	10	55568712	C	A	32	72
BRCA	BR-0067	ASCC1	SNP	Missense_Mutation	10	73963212	G	A	41	91
BRCA	BR-0067	ABCC8	SNP	Splice_site	11	17432063	C	T	22	100
BRCA	BR-0067	HARBI1	SNP	Missense_Mutation	11	46625349	C	T	29	81
BRCA	BR-0067	OR51T1	SNP	Silent	11	4903840	A	G	1	34
BRCA	BR-0067	OR52A5	SNP	Missense_Mutation	11	5153772	G	C	33	53
BRCA	BR-0067	OR4C6	SNP	Missense_Mutation	11	55432652	C	G	29	42
BRCA	BR-0067	OR5AP2	SNP	Silent	11	56409820	G	A	41	52
BRCA	BR-0067	LRTOMT	SNP	Nonsense_Mutation	11	71806129	G	T	33	65
BRCA	BR-0067	GABARAPL1	SNP	Silent	12	10374445	G	A	41	65
BRCA	BR-0067	ITPR2	SNP	Missense_Mutation	12	26809303	G	A	41	98
BRCA	BR-0067	NTF3	SNP	Silent	12	5603830	G	A	39	39
BRCA	BR-0067	ENO2	SNP	Splice_site	12	7026269	A	T	1	89
BRCA	BR-0067	PCCA	SNP	Silent	13	101020795	C	A	23	53
BRCA	BR-0067	ZMYM2	SNP	Missense_Mutation	13	20641120	C	T	20	58
BRCA	BR-0067	GJB2	SNP	Nonsense_Mutation	13	20763420	C	A	29	72
BRCA	BR-0067	SACS	SNP	Nonsense_Mutation	13	23904832	G	A	45	77
BRCA	BR-0067	FRY	SNP	Missense_Mutation	13	32705914	G	A	45	71
BRCA	BR-0067	PCDH9	SNP	Nonsense_Mutation	13	67799680	G	A	45	98
BRCA	BR-0067	TRAF3	SNP	Missense_Mutation	14	103363713	A	G	4	69
BRCA	BR-0067	ADCY4	SNP	Silent	14	24793543	G	T	41	50
BRCA	BR-0069	NES	SNP	Missense_Mutation	1	156641413	T	C	52	58
BRCA	BR-0069	PTPRU	SNP	Missense_Mutation	1	29639167	G	A	38	95
BRCA	BR-0069	AGRN	SNP	Missense_Mutation	1	981139	G	A	40	83
BRCA	BR-0069	SYNPO2L	SNP	Nonsense_Mutation	10	75406541	G	A	39	52
BRCA	BR-0069	ST5	SNP	Missense_Mutation	11	8732430	C	A	32	99
BRCA	BR-0069	C3orf23	SNP	Splice_Site	3	44448932	A	T	15	87
BRCA	BR-0069	CHDH	SNP	Missense_Mutation	3	53852060	T	C	57	93
BRCA	BR-0069	ENAM	SNP	Missense_Mutation	4	71509280	G	A	41	55
BRCA	BR-0069	GLO1	SNP	Missense_Mutation	6	38650632	C	G	29	85
BRCA	BR-0069	TNFRSF21	SNP	Missense_Mutation	6	47254058	C	G	25	58
BRCA	BR-0070	FAM58B	SNP	Missense_Mutation	1	200182899	G	A	38	55
BRCA	BR-0070	RYR2	SNP	Missense_Mutation	1	237754054	A	T	12	61
BRCA	BR-0070	NLRP3	SNP	Silent	1	247588380	C	T	19	49
BRCA	BR-0070	XPNPEP1	SNP	Missense_Mutation	10	111667465	G	A	37	91
BRCA	BR-0070	OR51G1	SNP	Missense_Mutation	11	4945188	C	T	19	73
BRCA	BR-0070	MPG	SNP	Missense_Mutation	16	135414	G	A	40	64
BRCA	BR-0070	MLLT6	SNP	Nonsense_Mutation	17	36872670	C	T	25	73
BRCA	BR-0070	MLLT6	SNP	Silent	17	36876045	C	T	24	48
BRCA	BR-0070	MLLT6	SNP	Nonsense_Mutation	17	36876657	C	T	25	89
BRCA	BR-0070	TUBD1	SNP	Missense_Mutation	17	57955634	G	A	42	97
BRCA	BR-0070	DNAH2	SNP	Missense_Mutation	17	7734097	G	A	38	99
BRCA	BR-0070	GAPDHS	SNP	Missense_Mutation	19	36035835	G	A	45	53
BRCA	BR-0070	RSPH6A	SNP	Missense_Mutation	19	46313890	C	T	29	74
BRCA	BR-0070	TTYH1	SNP	Silent	19	54930430	C	G	23	34
BRCA	BR-0070	GRB14	SNP	Missense_Mutation	2	165365281	C	T	28	96
BRCA	BR-0070	BMPR2	SNP	Missense_Mutation	2	203397365	G	A	41	100
BRCA	BR-0070	C2orf85	SNP	Silent	2	242814742	C	T	29	50
BRCA	BR-0070	HEATR5B	SNP	Missense_Mutation	2	37287828	C	T	31	99
BRCA	BR-0070	PHEX	SNP	Missense_Mutation	23	22117215	G	A	38	88
BRCA	BR-0070	OR2A12	SNP	Missense_Mutation	7	143792864	G	A	44	21
BRCA	BR-0070	EGFR	SNP	Silent	7	55266531	C	T	31	47
BRCA	BR-0071	PLK3	SNP	Missense_Mutation	1	45269024	G	A	46	56
BRCA	BR-0071	PLEKHN1	SNP	Missense_Mutation	1	909831	C	T	30	57
BRCA	BR-0071	ATRNL1	SNP	Silent	10	117093856	C	G	29	49
BRCA	BR-0071	ZDHHC13	SNP	Silent	11	19170755	C	T	29	60
BRCA	BR-0071	EPS8L2	SNP	Missense_Mutation	11	726346	G	A	39	50
BRCA	BR-0071	RFX4	SNP	Missense_Mutation	12	107125925	C	G	29	100
BRCA	BR-0071	AQP6	SNP	Missense_Mutation	12	50367119	G	A	40	55
BRCA	BR-0071	APAF1	SNP	Missense_Mutation	12	99117517	C	T	32	86
BRCA	BR-0071	SPG20	SNP	Missense_Mutation	13	36909281	C	A	32	85
BRCA	BR-0071	PPP2R5C	SNP	Silent	14	102368178	A	G	2	55
BRCA	BR-0071	NID2	SNP	Missense_Mutation	14	52493940	C	T	23	65
BRCA	BR-0071	SERPINA10	SNP	Missense_Mutation	14	94756382	C	G	32	62
BRCA	BR-0071	ZNF423	SNP	Missense_Mutation	16	49672480	G	C	45	66
BRCA	BR-0071	MON1B	SNP	Missense_Mutation	16	77228604	G	A	37	60
BRCA	BR-0071	RHBDL3	SNP	Splice_Site	17	30632358	A	G	15	90
BRCA	BR-0071	SLFN13	SNP	Missense_Mutation	17	33769276	C	G	32	50
BRCA	BR-0071	TP53	SNP	Splice_Site	17	7577610	T	C	53	82
BRCA	BR-0071	ZNF404	SNP	Missense_Mutation	19	44377263	G	C	33	44
BRCA	BR-0071	ZNF331	SNP	Silent	19	54080435	G	A	41	48
BRCA	BR-0071	LILRA1	SNP	Splice_site	19	55112281	G	A	45	47
BRCA	BR-0071	ZNF264	SNP	Missense_Mutation	19	57716815	G	C	41	50
BRCA	BR-0071	STK25	SNP	Missense_Mutation	2	242438069	G	C	33	100
BRCA	BR-0071	FOXN2	SNP	Missense_Mutation	2	48602253	C	G	24	54
BRCA	BR-0071	NAA20	SNP	Nonsense_Mutation	20	20007538	G	T	41	97
BRCA	BR-0071	C20orf132	SNP	Silent	20	35748155	G	C	33	53
BRCA	BR-0071	NKAP	SNP	Missense_Mutation	23	119072707	C	G	32	54
BRCA	BR-0071	PIK3CA	SNP	Splice_site	3	178917478	G	A	44	99
BRCA	BR-0071	PPP4R2	SNP	Missense_Mutation	3	73114064	G	C	33	72
BRCA	BR-0071	HTT	SNP	Silent	4	3230365	G	A	47	50
BRCA	BR-0071	PTPN13	SNP	Missense_Mutation	4	87683900	C	G	32	50
BRCA	BR-0071	HEATR7B2	SNP	Missense_Mutation	5	41052612	C	G	29	50
BRCA	BR-0071	ZFYVE16	SNP	Missense_Mutation	5	79744206	C	G	32	69
BRCA	BR-0071	PCSK1	SNP	Missense_Mutation	5	95765014	G	A	45	97
BRCA	BR-0071	DAGLB	SNP	Missense_Mutation	7	6472552	G	A	37	48
BRCA	BR-0071	BHLHA15	SNP	Missense_Mutation	7	97841881	G	A	39	83
BRCA	BR-0071	SYBU	SNP	Missense_Mutation	8	110598341	G	A	41	75
BRCA	BR-MEX-005	SPEN	SNP	Missense_Mutation	1	16261553	C	A	22	69
BRCA	BR-MEX-005	CACNA1E	SNP	Missense_Mutation	1	181721292	C	T	19	70
BRCA	BR-MEX-005	UBR4	SNP	Missense_Mutation	1	19427001	G	T	48	95
BRCA	BR-MEX-005	ZDHHC13	SNP	Missense_Mutation	11	19167843	C	A	32	76
BRCA	BR-MEX-005	PRMT3	SNP	Missense_Mutation	11	20411348	A	G	16	61
BRCA	BR-MEX-005	OR52E4	SNP	Missense_Mutation	11	5905893	G	A	38	69
BRCA	BR-MEX-005	ACTN3	SNP	Missense_Mutation	11	66318756	A	C	7	74
BRCA	BR-MEX-005	UBC	SNP	Missense_Mutation	12	125398067	A	T	11	86
BRCA	BR-MEX-005	GRIN2B	SNP	Missense_Mutation	12	13716216	G	A	39	95
BRCA	BR-MEX-005	TP53	SNP	Missense_Mutation	17	7577515	T	G	59	73
BRCA	BR-MEX-005	CEACAM8	SNP	Missense_Mutation	19	43093650	G	A	38	50
BRCA	BR-MEX-005	TTN	SNP	Silent	2	179413008	A	G	11	54
BRCA	BR-MEX-005	NCOA1	SNP	Silent	2	24914381	A	G	6	63
BRCA	BR-MEX-005	STAG2	SNP	Missense_Mutation	23	123202482	C	A	19	51
BRCA	BR-MEX-005	RAPGEF2	SNP	Silent	4	160273949	C	A	32	50
BRCA	BR-MEX-005	FLT4	SNP	Missense_Mutation	5	180057229	C	T	27	51
BRCA	BR-MEX-005	GSDMC	SNP	Missense_Mutation	8	130760796	G	A	33	50
BRCA	BR-MEX-005	CPSF1	SNP	Missense_Mutation	8	145634533	C	T	19	94
BRCA	BR-MEX-005	RNF183	SNP	Missense_Mutation	9	116060430	T	C	54	82
BRCA	BR-MEX-015	KIF1B	SNP	Missense	1	10342429	G	C	33	77
BRCA	BR-MEX-015	ARV1	SNP	Synonymous	1	231125870	C	G	32	64
BRCA	BR-MEX-015	SRRM1	SNP	Missense	1	24972545	C	T	25	100
BRCA	BR-MEX-015	MACF1	SNP	Nonsense	1	39801261	C	T	29	69
BRCA	BR-MEX-015	LRRC8C	SNP	Missense	1	90180510	C	T	32	80
BRCA	BR-MEX-015	A1CF	SNP	Splice_site	10	52566490	C	T	29	63
BRCA	BR-MEX-015	AHNAK	SNP	Missense	11	62299819	C	A	29	52
BRCA	BR-MEX-015	NARS2	SNP	Missense	11	78189672	C	T	32	76
BRCA	BR-MEX-015	NARS2	SNP	Missense	11	78189697	C	T	29	65
BRCA	BR-MEX-015	SNRNP35	SNP	Missense	12	123950593	C	T	21	69
BRCA	BR-MEX-015	PIK3C2G	SNP	Missense	12	18491472	G	A	33	62
BRCA	BR-MEX-015	KCNJ8	SNP	Missense	12	21918986	C	T	29	100
BRCA	BR-MEX-015	KIAA0564	SNP	Missense	13	42361594	G	A	42	54
BRCA	BR-MEX-015	PYGO1	SNP	Missense	15	55838359	C	T	29	96
BRCA	BR-MEX-015	ZNF689	SNP	Missense	16	30615345	C	A	17	29
BRCA	BR-MEX-015	MED24	SNP	Missense	17	38183275	C	G	31	97
BRCA	BR-MEX-015	MAP2K6	SNP	Synonymous	17	67521065	C	T	29	66
BRCA	BR-MEX-015	ZNF230	SNP	Synonymous	19	44514638	C	T	29	50
BRCA	BR-MEX-015	ZNF417	SNP	Nonsense	19	58420703	G	A	45	50
BRCA	BR-MEX-015	RANBP2	SNP	Missense	2	109374915	C	A	24	92
BRCA	BR-MEX-015	EPC2	SNP	Synonymous	2	149542457	C	T	29	78
BRCA	BR-MEX-015	CASP8	SNP	Missense	2	202139642	C	T	31	49
BRCA	BR-MEX-015	COL4A4	SNP	Missense	2	227973329	C	T	23	75
BRCA	BR-MEX-015	XBP1	DEL	De_novo_Start_InFrame	22	29192324	ATT	-	8	44
BRCA	BR-MEX-015	TAB1	SNP	Nonsense	22	39811110	G	T	45	79
BRCA	BR-MEX-015	DGKK	SNP	Missense	23	50163410	T	G	64	68
BRCA	BR-MEX-015	ACRC	SNP	Missense	23	70823870	G	A	34	39
BRCA	BR-MEX-015	ACPP	SNP	Synonymous	3	132036318	C	T	30	37
BRCA	BR-MEX-015	CLSTN2	SNP	Splice_Site_SNP	3	140251165	G	C	33	98
BRCA	BR-MEX-015	LRRC31	SNP	Synonymous	3	169574496	G	A	33	51
BRCA	BR-MEX-015	ARPP21	SNP	Missense	3	35748488	C	T	17	95
BRCA	BR-MEX-015	DNAH1	SNP	Missense	3	52379522	G	T	48	53
BRCA	BR-MEX-015	PRDM9	SNP	Missense	5	23527491	G	C	33	17
BRCA	BR-MEX-015	PAIP1	SNP	Nonsense	5	43537004	G	A	45	92
BRCA	BR-MEX-015	ZDHHC11	SNP	Missense	5	840399	G	T	41	49
BRCA	BR-MEX-015	TFAP2A	SNP	Missense	6	10407010	G	A	33	62
BRCA	BR-MEX-015	EXOC2	SNP	Synonymous	6	564640	G	A	45	54
BRCA	BR-MEX-015	DGKI	SNP	Missense	7	137304653	G	A	45	100
BRCA	BR-MEX-015	NCAPG2	SNP	Missense	7	158478927	C	A	29	82
BRCA	BR-MEX-015	PCLO	SNP	Nonsense	7	82764222	G	A	40	61
BRCA	BR-MEX-015	PON2	SNP	Missense	7	95035457	C	A	29	79
BRCA	BR-MEX-015	RAD54B	SNP	Synonymous	8	95390574	G	T	45	62
BRCA	BR-MEX-015	TDRD7	SNP	Missense	9	100237721	C	G	30	58
BRCA	BR-MEX-015	ROR2	SNP	Missense	9	94484855	C	A	24	68
BRCA	BR-MEX-026	C1orf227	SNP	Silent	1	213009360	C	T	29	51
BRCA	BR-MEX-026	CAPN9	SNP	Missense_Mutation	1	230915973	A	G	12	91
BRCA	BR-MEX-026	PRDM16	SNP	Missense_Mutation	1	3328200	A	T	6	88
BRCA	BR-MEX-026	C10orf90	SNP	Missense_Mutation	10	128193578	C	T	32	39
BRCA	BR-MEX-026	MMP8	SNP	Nonstop_Mutation	11	102584518	C	G	32	50
BRCA	BR-MEX-026	PYGM	SNP	Silent	11	64523010	G	A	40	46
BRCA	BR-MEX-026	ANO4	SNP	Splice_site	12	101365182	C	T	29	80
BRCA	BR-MEX-026	CGRRF1	SNP	Splice_site	14	54997766	A	G	16	90
BRCA	BR-MEX-026	ISLR	SNP	Silent	15	74468342	G	A	39	9
BRCA	BR-MEX-026	AP1G1	SNP	Nonsense_Mutation	16	71782173	G	A	37	53
BRCA	BR-MEX-026	CHST6	SNP	Missense_Mutation	16	75512639	G	A	33	63
BRCA	BR-MEX-026	NOL4	SNP	Missense_Mutation	18	31599403	G	C	33	85
BRCA	BR-MEX-026	REV1	SNP	Missense_Mutation	2	100022484	G	A	44	86
BRCA	BR-MEX-026	AGPAT3	SNP	Silent	21	45379676	C	G	32	54
BRCA	BR-MEX-026	MAGT1	SNP	Silent	23	77131044	T	C	58	48
BRCA	BR-MEX-026	GPR149	SNP	Missense_Mutation	3	154055964	C	T	29	98
BRCA	BR-MEX-026	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-MEX-026	TBC1D9	SNP	Missense_Mutation	4	141600319	C	G	29	100
BRCA	BR-MEX-026	TRIML2	SNP	Silent	4	189022267	C	T	29	52
BRCA	BR-MEX-026	MED23	SNP	Splice_site	6	131917089	T	A	51	93
BRCA	BR-MEX-026	OGN	SNP	Missense_Mutation	9	95163440	C	T	29	49
BRCA	BR-MEX-027	AMPD2	SNP	Missense_Mutation	1	110172499	G	A	46	96
BRCA	BR-MEX-027	OR10J1	SNP	Silent	1	159409725	C	T	29	50
BRCA	BR-MEX-027	PAPPA2	SNP	Missense_Mutation	1	176525622	A	C	3	42
BRCA	BR-MEX-027	LUZP1	SNP	Missense_Mutation	1	23418221	G	A	41	93
BRCA	BR-MEX-027	FAM54B	SNP	Missense_Mutation	1	26156239	G	A	40	52
BRCA	BR-MEX-027	PLK3	SNP	Missense_Mutation	1	45270103	C	G	29	83
BRCA	BR-MEX-027	BICC1	SNP	Missense_Mutation	10	60558897	C	G	18	65
BRCA	BR-MEX-027	CPEB3	SNP	Missense_Mutation	10	93811989	C	G	19	79
BRCA	BR-MEX-027	ENTPD1	SNP	Missense_Mutation	10	97605121	G	A	35	49
BRCA	BR-MEX-027	UTP20	SNP	Missense_Mutation	12	101723079	C	T	24	100
BRCA	BR-MEX-027	KIF21A	SNP	Missense_Mutation	12	39760225	C	A	30	98
BRCA	BR-MEX-027	KRT79	SNP	Missense_Mutation	12	53227629	C	T	27	96
BRCA	BR-MEX-027	C3AR1	SNP	Missense_Mutation	12	8212211	G	T	41	53
BRCA	BR-MEX-027	HECTD1	SNP	Missense_Mutation	14	31613328	C	A	17	100
BRCA	BR-MEX-027	SDCCAG1	SNP	Missense_Mutation	14	50272747	G	A	47	99
BRCA	BR-MEX-027	C14orf101	SNP	Missense_Mutation	14	57114130	A	T	4	60
BRCA	BR-MEX-027	DCAF5	SNP	Silent	14	69619585	G	A	42	59
BRCA	BR-MEX-027	GNB5	SNP	Silent	15	52442105	C	T	17	57
BRCA	BR-MEX-027	GSG1L	SNP	Missense_Mutation	16	27895935	G	A	41	98
BRCA	BR-MEX-027	CWC25	SNP	Missense_Mutation	17	36963097	T	A	54	53
BRCA	BR-MEX-027	BRCA1	SNP	Missense_Mutation	17	41245272	T	A	63	58
BRCA	BR-MEX-027	ITGA2B	SNP	Missense_Mutation	17	42449739	C	A	22	56
BRCA	BR-MEX-027	DNAH17	SNP	Silent	17	76446863	C	T	21	65
BRCA	BR-MEX-027	TYK2	SNP	Silent	19	10479078	G	A	34	51
BRCA	BR-MEX-027	USHBP1	SNP	Missense_Mutation	19	17373585	G	A	42	54
BRCA	BR-MEX-027	INSR	SNP	Missense_Mutation	19	7166380	T	A	50	87
BRCA	BR-MEX-027	ZSWIM2	SNP	Missense_Mutation	2	187693087	G	A	47	64
BRCA	BR-MEX-027	OBSL1	SNP	Missense_Mutation	2	220424048	G	A	47	52
BRCA	BR-MEX-027	C2orf63	SNP	Silent	2	55408843	G	T	33	45
BRCA	BR-MEX-027	SLC13A3	SNP	Silent	20	45224876	G	A	41	67
BRCA	BR-MEX-027	BACE2	SNP	Silent	21	42613796	C	T	17	43
BRCA	BR-MEX-027	MID1	SNP	Silent	23	10427795	G	A	44	70
BRCA	BR-MEX-027	ARHGAP6	SNP	Silent	23	11162146	C	T	19	49
BRCA	BR-MEX-027	IL13RA1	SNP	Nonsense_Mutation	23	117883685	T	A	60	47
BRCA	BR-MEX-027	DYNLT3	SNP	Missense_Mutation	23	37700346	A	T	6	82
BRCA	BR-MEX-027	WNK3	SNP	Missense_Mutation	23	54259425	T	A	60	63
BRCA	BR-MEX-027	FOXO4	SNP	Missense_Mutation	23	70321548	C	T	24	82
BRCA	BR-MEX-027	GAP43	SNP	Splice_Site	3	115342568	T	A	57	83
BRCA	BR-MEX-027	IGSF10	SNP	Missense_Mutation	3	151164006	G	T	36	51
BRCA	BR-MEX-027	ALS2CL	SNP	Missense_Mutation	3	46722021	A	G	15	80
BRCA	BR-MEX-027	OTOP1	SNP	Missense_Mutation	4	4199681	G	A	38	80
BRCA	BR-MEX-027	RAD50	SNP	Missense_Mutation	5	131945050	G	C	33	96
BRCA	BR-MEX-027	PREP	SNP	Silent	6	105821338	C	G	25	52
BRCA	BR-MEX-027	HIST1H1A	SNP	Silent	6	26017511	G	C	45	45
BRCA	BR-MEX-027	ITPR3	SNP	Missense_Mutation	6	33608316	C	A	22	82
BRCA	BR-MEX-027	CPA4	SNP	Missense_Mutation	7	129951945	C	T	22	80
BRCA	BR-MEX-027	PRPS1L1	SNP	Missense_Mutation	7	18067240	C	T	19	52
BRCA	BR-MEX-027	EGFR	SNP	Missense_Mutation	7	55211072	G	T	33	55
BRCA	BR-MEX-027	FSCN1	SNP	Nonsense_Mutation	7	5642908	C	T	29	82
BRCA	BR-MEX-027	KCNV1	SNP	Missense_Mutation	8	110980822	C	T	27	70
BRCA	BR-MEX-027	LZTS1	SNP	Missense_Mutation	8	20112612	C	A	20	51
BRCA	BR-MEX-027	OR13C3	SNP	Missense_Mutation	9	107298106	T	A	52	55
BRCA	BR-MEX-027	FAM129B	SNP	Missense_Mutation	9	130279150	G	A	42	69
BRCA	BR-MEX-027	ARID3C	SNP	Missense_Mutation	9	34622361	C	T	26	56
BRCA	BR-MEX-028	KIAA0467	SNP	Missense_Mutation	1	43904393	G	A	40	77
BRCA	BR-MEX-028	FADS3	SNP	Missense_Mutation	11	61646061	C	T	27	79
BRCA	BR-MEX-028	OAS2	SNP	Splice_site	12	113440906	G	A	39	50
BRCA	BR-MEX-028	NACA	SNP	Missense_Mutation	12	57114467	G	A	33	25
BRCA	BR-MEX-028	PRM1	SNP	Splice_site	16	11374891	C	T	18	59
BRCA	BR-MEX-028	ACSM2B	SNP	Splice_site	16	20554459	G	A	38	32
BRCA	BR-MEX-028	KRT9	SNP	Splice_site	17	39727603	C	G	24	76
BRCA	BR-MEX-028	ANKRD40	SNP	Missense_Mutation	17	48784955	C	T	24	92
BRCA	BR-MEX-028	CCDC47	SNP	Missense_Mutation	17	61843397	C	T	30	93
BRCA	BR-MEX-028	SEC14L1	SNP	Missense_Mutation	17	75190903	G	A	40	50
BRCA	BR-MEX-028	?	SNP	Missense_Mutation	17	78291022	C	T	27	0
BRCA	BR-MEX-028	IL27RA	SNP	Missense_Mutation	19	14160024	G	A	38	51
BRCA	BR-MEX-028	NLRP4	SNP	Missense_Mutation	19	56388508	C	T	19	70
BRCA	BR-MEX-028	KIF1A	SNP	Missense_Mutation	2	241706335	C	T	31	65
BRCA	BR-MEX-028	ZFP64	SNP	Missense_Mutation	20	50803488	T	A	58	56
BRCA	BR-MEX-028	IGSF11	SNP	Missense_Mutation	3	118645007	G	T	47	96
BRCA	BR-MEX-028	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	BR-MEX-028	PDS5A	SNP	Missense_Mutation	4	39874689	T	C	49	79
BRCA	BR-MEX-028	AASDH	SNP	Silent	4	57221362	A	G	13	55
BRCA	BR-MEX-028	JAKMIP1	SNP	Missense_Mutation	4	6062186	C	T	31	78
BRCA	BR-MEX-028	KIF3A	SNP	Silent	5	132032350	A	T	7	57
BRCA	BR-MEX-028	DDX46	SNP	Splice_site	5	134164394	T	C	49	90
BRCA	BR-MEX-028	MCCC2	SNP	Silent	5	70895492	A	G	8	38
BRCA	BR-MEX-028	ZCCHC6	SNP	Missense_Mutation	9	88938810	G	C	36	68
BRCA	BR-MEX-030	RIT1	SNP	Missense_Mutation	1	155870291	C	T	19	94
BRCA	BR-MEX-030	FCRL5	SNP	Missense_Mutation	1	157514812	C	A	25	76
BRCA	BR-MEX-030	FAM35A	SNP	Missense_Mutation	10	88950316	C	T	24	59
BRCA	BR-MEX-030	WEE1	SNP	Missense_Mutation	11	9608033	T	G	56	91
BRCA	BR-MEX-030	WDR76	SNP	Missense_Mutation	15	44143356	C	G	32	50
BRCA	BR-MEX-030	HMG20A	SNP	Missense_Mutation	15	77756589	C	T	29	80
BRCA	BR-MEX-030	CES2	SNP	Silent	16	66972013	C	T	27	51
BRCA	BR-MEX-030	STAT5B	SNP	Missense_Mutation	17	40370747	A	C	6	89
BRCA	BR-MEX-030	MYCBPAP	SNP	Silent	17	48586026	G	C	39	50
BRCA	BR-MEX-030	TTR	SNP	Missense_Mutation	18	29175168	A	G	5	62
BRCA	BR-MEX-030	RALBP1	SNP	Missense_Mutation	18	9522323	C	T	28	97
BRCA	BR-MEX-030	UNC13A	SNP	Missense_Mutation	19	17780482	C	T	22	94
BRCA	BR-MEX-030	DYRK1B	SNP	Missense_Mutation	19	40320595	G	C	35	65
BRCA	BR-MEX-030	SATB2	SNP	Silent	2	200246479	C	A	31	35
BRCA	BR-MEX-030	VWA3B	SNP	Silent	2	98928746	C	A	22	62
BRCA	BR-MEX-030	GDF5	SNP	Missense_Mutation	20	34025551	A	G	7	52
BRCA	BR-MEX-030	ALG13	SNP	Missense_Mutation	23	110970869	G	A	45	84
BRCA	BR-MEX-030	PLXNA3	SNP	Missense_Mutation	23	153694750	G	A	40	54
BRCA	BR-MEX-030	PIK3CA	SNP	Missense_Mutation	3	178927980	T	C	55	89
BRCA	BR-MEX-030	SH3TC1	SNP	Missense_Mutation	4	8230099	C	A	28	68
BRCA	BR-MEX-030	TIFAB	SNP	Missense_Mutation	5	134785391	C	T	27	51
BRCA	BR-MEX-030	EPHA7	SNP	Missense_Mutation	6	93979212	G	A	48	99
BRCA	BR-MEX-030	TRPS1	SNP	Silent	8	116632190	T	C	62	55
BRCA	BR-MEX-031	CAPN1	SNP	Missense_Mutation	11	64950209	G	T	47	81
BRCA	BR-MEX-034	E2F8	SNP	Missense_Mutation	11	19251115	G	C	42	52
BRCA	BR-MEX-034	CAPRIN1	SNP	Missense_Mutation	11	34073992	G	T	39	51
BRCA	BR-MEX-034	OR4C13	SNP	Silent	11	49974106	G	T	47	51
BRCA	BR-MEX-034	OR5AR1	SNP	Silent	11	56431698	C	T	27	52
BRCA	BR-MEX-034	HAL	SNP	Missense_Mutation	12	96370416	G	A	41	100
BRCA	BR-MEX-034	PSMC6	SNP	Silent	14	53180667	T	C	60	55
BRCA	BR-MEX-034	RHOJ	SNP	Silent	14	63735841	G	T	47	67
BRCA	BR-MEX-034	SEMA4B	SNP	Silent	15	90771833	C	T	22	57
BRCA	BR-MEX-034	LMF1	SNP	Missense_Mutation	16	961031	C	T	25	89
BRCA	BR-MEX-034	ACACA	SNP	Silent	17	35591953	T	C	57	51
BRCA	BR-MEX-034	FMNL1	SNP	Missense_Mutation	17	43311503	T	C	58	79
BRCA	BR-MEX-034	TP53	SNP	Missense_Mutation	17	7578526	C	A	25	97
BRCA	BR-MEX-034	ZNF441	SNP	Silent	19	11891791	A	G	5	55
BRCA	BR-MEX-034	GSS	SNP	Missense_Mutation	20	33519776	C	T	27	88
BRCA	BR-MEX-034	SOD1	SNP	Missense_Mutation	21	33036151	G	A	45	60
BRCA	BR-MEX-034	DSCAM	SNP	Silent	21	41416135	G	T	43	51
BRCA	BR-MEX-034	WDR13	SNP	Silent	23	48463378	C	T	19	49
BRCA	BR-MEX-034	ZC4H2	SNP	Missense_Mutation	23	64139041	C	T	30	94
BRCA	BR-MEX-034	LSM3	SNP	Missense_Mutation	3	14223083	G	T	35	60
BRCA	BR-MEX-034	SLC34A2	SNP	Missense_Mutation	4	25678178	G	A	38	77
BRCA	BR-MEX-034	ESYT2	SNP	Missense_Mutation	7	158529800	G	A	38	54
BRCA	BR-MEX-034	AMZ1	SNP	Silent	7	2752047	G	C	38	43
BRCA	BR-MEX-034	GPR124	SNP	Splice_Site	8	37692918	T	A	59	90
BRCA	BR-MEX-036	PLCH2	SNP	Missense_Mutation	1	2430588	C	T	23	97
BRCA	BR-MEX-036	NPAS4	SNP	Missense_Mutation	11	66190373	G	A	38	57
BRCA	BR-MEX-036	KRT82	SNP	Missense_Mutation	12	52799970	T	C	49	56
BRCA	BR-MEX-036	DCAF11	SNP	Missense_Mutation	14	24588419	G	A	41	95
BRCA	BR-MEX-036	CHST5	SNP	Silent	16	75564028	G	A	44	67
BRCA	BR-MEX-036	BRIP1	SNP	Missense_Mutation	17	59760829	G	A	48	50
BRCA	BR-MEX-036	PGS1	SNP	Silent	17	76395565	C	T	31	41
BRCA	BR-MEX-036	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-MEX-036	KIF9	SNP	Missense_Mutation	3	47315055	C	T	19	87
BRCA	BR-MEX-036	PACRGL	SNP	Missense_Mutation	4	20706430	T	C	52	80
BRCA	BR-MEX-036	ESR1	SNP	Missense_Mutation	6	152163751	C	T	19	74
BRCA	BR-MEX-036	TBXAS1	SNP	Missense_Mutation	7	139706970	C	T	23	75
BRCA	BR-MEX-037	RPRD2	SNP	Missense_Mutation	1	150445525	G	C	33	55
BRCA	BR-MEX-037	DCST2	SNP	Silent	1	155002594	G	C	45	54
BRCA	BR-MEX-037	HCN3	SNP	Silent	1	155254449	C	T	29	65
BRCA	BR-MEX-037	ATP1A2	SNP	Missense_Mutation	1	160100018	G	C	41	95
BRCA	BR-MEX-037	METTL13	SNP	Nonsense_Mutation	1	171755024	C	T	29	93
BRCA	BR-MEX-037	STX6	SNP	Missense_Mutation	1	180959152	G	C	45	70
BRCA	BR-MEX-037	LAMB3	SNP	Missense_Mutation	1	209803245	C	G	32	54
BRCA	BR-MEX-037	KIF17	SNP	Missense_Mutation	1	20998666	G	C	45	81
BRCA	BR-MEX-037	SERTAD4	SNP	Missense_Mutation	1	210415536	G	C	45	87
BRCA	BR-MEX-037	RYR2	SNP	Missense_Mutation	1	237550635	C	T	32	73
BRCA	BR-MEX-037	SCCPDH	SNP	Missense_Mutation	1	246927584	C	G	29	73
BRCA	BR-MEX-037	HNRNPH3	SNP	Missense_Mutation	10	70101534	G	C	41	93
BRCA	BR-MEX-037	CSRP3	SNP	Missense_Mutation	11	19209717	C	T	32	100
BRCA	BR-MEX-037	SLC17A6	SNP	Missense_Mutation	11	22397570	C	G	32	100
BRCA	BR-MEX-037	OR5B12	SNP	Missense_Mutation	11	58206901	G	A	47	94
BRCA	BR-MEX-037	TAS2R43	SNP	Nonsense_Mutation	12	11243954	G	T	45	49
BRCA	BR-MEX-037	GPR162	SNP	Missense_Mutation	12	6933613	C	A	29	56
BRCA	BR-MEX-037	MIPEP	SNP	Nonsense_Mutation	13	24304576	G	A	45	70
BRCA	BR-MEX-037	GPR12	SNP	Missense_Mutation	13	27333054	C	G	32	100
BRCA	BR-MEX-037	RBM25	SNP	Missense_Mutation	14	73554715	G	C	41	100
BRCA	BR-MEX-037	ACCN1	SNP	Missense_Mutation	17	31350913	C	G	29	35
BRCA	BR-MEX-037	CCL3	SNP	Splice_site	17	34417331	C	T	19	77
BRCA	BR-MEX-037	GGNBP2	SNP	Nonsense_Mutation	17	34910706	C	T	29	84
BRCA	BR-MEX-037	KRT32	SNP	Missense_Mutation	17	39622383	C	G	29	93
BRCA	BR-MEX-037	EFCAB3	SNP	Missense_Mutation	17	60470983	G	C	33	55
BRCA	BR-MEX-037	LAMA3	SNP	Silent	18	21487802	C	G	29	50
BRCA	BR-MEX-037	YES1	SNP	Nonsense_Mutation	18	742923	G	C	45	77
BRCA	BR-MEX-037	MBP	SNP	Missense_Mutation	18	74696844	C	T	31	76
BRCA	BR-MEX-037	ZNF136	SNP	Missense_Mutation	19	12296721	C	G	32	50
BRCA	BR-MEX-037	SLC1A6	SNP	Missense_Mutation	19	15064961	C	G	32	70
BRCA	BR-MEX-037	CD22	SNP	Silent	19	35822955	C	T	31	36
BRCA	BR-MEX-037	ZNF233	SNP	Missense_Mutation	19	44777746	G	C	33	56
BRCA	BR-MEX-037	KLK10	SNP	Silent	19	51522333	C	T	31	56
BRCA	BR-MEX-037	ZNF544	SNP	Silent	19	58773466	G	T	41	47
BRCA	BR-MEX-037	SNAPC2	SNP	Missense_Mutation	19	7987166	G	C	45	78
BRCA	BR-MEX-037	TTN	SNP	Missense_Mutation	2	179469836	C	T	31	100
BRCA	BR-MEX-037	ADAM23	SNP	Nonsense_Mutation	2	207431970	C	G	29	99
BRCA	BR-MEX-037	MAP2	SNP	Missense_Mutation	2	210558269	G	C	33	67
BRCA	BR-MEX-037	ATG9A	SNP	Missense_Mutation	2	220089405	G	C	33	62
BRCA	BR-MEX-037	NEU2	SNP	Missense_Mutation	2	233897569	C	T	18	58
BRCA	BR-MEX-037	HJURP	SNP	Missense_Mutation	2	234750393	C	G	32	50
BRCA	BR-MEX-037	HDLBP	SNP	Missense_Mutation	2	242194803	C	T	29	80
BRCA	BR-MEX-037	KDM3A	SNP	Nonsense_Mutation	2	86718345	C	T	29	97
BRCA	BR-MEX-037	SH3BGR	SNP	Missense_Mutation	21	40824051	C	G	32	82
BRCA	BR-MEX-037	GLRA4	SNP	Missense_Mutation	23	102968532	C	G	25	61
BRCA	BR-MEX-037	SLC38A5	SNP	Silent	23	48325354	G	A	33	54
BRCA	BR-MEX-037	IRAK2	SNP	Missense_Mutation	3	10255228	C	G	32	56
BRCA	BR-MEX-037	BOC	SNP	Missense_Mutation	3	112997020	G	C	45	81
BRCA	BR-MEX-037	TF	SNP	Missense_Mutation	3	133494324	G	C	45	37
BRCA	BR-MEX-037	RNF13	SNP	Silent	3	149677901	C	G	29	50
BRCA	BR-MEX-037	FOXP1	SNP	Splice_Site	3	71021828	C	G	32	100
BRCA	BR-MEX-037	TLR3	SNP	Missense_Mutation	4	187004333	C	G	32	77
BRCA	BR-MEX-037	PCDHB9	SNP	Missense_Mutation	5	140567907	G	C	33	92
BRCA	BR-MEX-037	DHX29	SNP	Missense_Mutation	5	54579455	C	G	32	44
BRCA	BR-MEX-037	MAST4	SNP	Missense_Mutation	5	66438320	G	C	41	88
BRCA	BR-MEX-037	HIST1H2BG	SNP	Missense_Mutation	6	26216643	C	T	31	91
BRCA	BR-MEX-037	ZKSCAN3	SNP	Silent	6	28333912	C	T	29	53
BRCA	BR-MEX-037	ZNF311	SNP	Missense_Mutation	6	28963998	C	G	32	50
BRCA	BR-MEX-037	MAS1L	SNP	Missense_Mutation	6	29454917	G	C	47	33
BRCA	BR-MEX-037	DST	SNP	Silent	6	56426232	C	T	24	56
BRCA	BR-MEX-037	MGAM	SNP	Missense_Mutation	7	141758104	G	C	33	37
BRCA	BR-MEX-037	POU6F2	SNP	Silent	7	39125507	G	C	41	62
BRCA	BR-MEX-037	PKHD1L1	SNP	Missense_Mutation	8	110477277	C	G	32	98
BRCA	BR-MEX-037	TRPS1	SNP	Silent	8	116599489	C	T	25	44
BRCA	BR-MEX-037	PLEC	SNP	Missense_Mutation	8	144995121	G	C	45	65
BRCA	BR-MEX-037	RAB11FIP1	SNP	De_novo_Start_OutOfFrame	8	37756966	G	C	37	51
BRCA	BR-MEX-037	ADAM18	SNP	Silent	8	39581322	G	C	45	53
BRCA	BR-MEX-037	POTEA	SNP	Missense_Mutation	8	43155721	T	G	64	59
BRCA	BR-MEX-037	RP1	SNP	Missense_Mutation	8	55540317	C	G	32	65
BRCA	BR-MEX-037	DNAJC5B	SNP	Missense_Mutation	8	67012213	G	C	45	78
BRCA	BR-MEX-037	EYA1	SNP	Splice_Site	8	72182059	C	G	32	99
BRCA	BR-MEX-037	PI15	SNP	Missense_Mutation	8	75737530	C	T	32	65
BRCA	BR-MEX-037	FAM82B	SNP	Silent	8	87487130	C	T	29	76
BRCA	BR-MEX-037	SH3GL2	SNP	Missense_Mutation	9	17791274	G	C	41	87
BRCA	BR-MEX-038	OR2L13	SNP	Missense_Mutation	1	248262825	G	A	40	16
BRCA	BR-MEX-038	PRDM16	SNP	Silent	1	3328795	C	T	23	35
BRCA	BR-MEX-038	Unknown	SNP	Silent	10	134664771	C	T	27	48
BRCA	BR-MEX-038	DNAH10	SNP	Nonsense_Mutation	12	124270433	G	A	43	100
BRCA	BR-MEX-038	KRT78	SNP	Missense_Mutation	12	53241832	C	T	26	54
BRCA	BR-MEX-038	SLC4A1	SNP	Missense_Mutation	17	42335485	C	T	19	56
BRCA	BR-MEX-038	DNAH2	SNP	Splice_site	17	7691178	G	T	44	82
BRCA	BR-MEX-038	ADD2	SNP	Missense_Mutation	2	70919648	C	T	22	81
BRCA	BR-MEX-038	RTEL1	SNP	Silent	20	62319667	C	T	27	35
BRCA	BR-MEX-038	CCDC160	SNP	Silent	23	133379586	C	T	23	43
BRCA	BR-MEX-038	CRMP1	SNP	Silent	4	5838519	C	T	30	51
BRCA	BR-MEX-038	FAM174A	SNP	Missense_Mutation	5	99897888	C	G	31	67
BRCA	BR-MEX-038	SLC17A1	SNP	Missense_Mutation	6	25799135	C	A	27	37
BRCA	BR-MEX-038	SLC12A9	SNP	Silent	7	100451915	G	A	40	46
BRCA	BR-MEX-038	SMO	SNP	Missense_Mutation	7	128846161	C	T	18	82
BRCA	BR-MEX-038	SLC29A4	SNP	Silent	7	5338875	G	A	48	77
BRCA	BR-MEX-038	FLJ43860	SNP	Missense_Mutation	8	142486177	C	G	25	55
BRCA	BR-MEX-038	SHC3	SNP	Missense_Mutation	9	91653015	C	T	23	96
BRCA	BR-MEX-039	Unknown	SNP	Missense_Mutation	17	40179079	C	G	27	52
BRCA	BR-MEX-039	ELL	SNP	Silent	19	18561734	G	T	39	46
BRCA	BR-MEX-039	MAST4	SNP	Missense_Mutation	5	66462340	G	T	47	71
BRCA	BR-MEX-041	SRM	SNP	Silent	1	11115844	C	T	32	49
BRCA	BR-MEX-041	NES	SNP	Nonsense_Mutation	1	156640274	G	A	45	68
BRCA	BR-MEX-041	FMO1	SNP	Missense_Mutation	1	171254618	G	A	45	54
BRCA	BR-MEX-041	KIAA1614	SNP	Missense_Mutation	1	180885553	C	G	32	53
BRCA	BR-MEX-041	F13B	SNP	Splice_site	1	197021962	G	T	44	85
BRCA	BR-MEX-041	ASPM	SNP	Missense_Mutation	1	197065151	G	C	33	69
BRCA	BR-MEX-041	KLHL12	SNP	Silent	1	202894231	G	C	45	53
BRCA	BR-MEX-041	C1orf150	SNP	Missense_Mutation	1	247737496	C	T	29	60
BRCA	BR-MEX-041	C1orf38	SNP	Silent	1	28208663	C	T	29	56
BRCA	BR-MEX-041	PRDM16	SNP	Silent	1	3350318	G	A	45	69
BRCA	BR-MEX-041	KCNK18	SNP	Missense_Mutation	10	118957042	G	C	33	56
BRCA	BR-MEX-041	CHST15	SNP	Missense_Mutation	10	125805613	C	A	30	62
BRCA	BR-MEX-041	FAM171A1	SNP	Missense_Mutation	10	15255054	C	T	30	82
BRCA	BR-MEX-041	USP54	SNP	Silent	10	75301259	G	A	45	52
BRCA	BR-MEX-041	CD248	SNP	Missense_Mutation	11	66082679	G	C	33	62
BRCA	BR-MEX-041	HSP90B1	SNP	Missense_Mutation	12	104341095	G	A	33	82
BRCA	BR-MEX-041	SIRT4	SNP	Missense_Mutation	12	120741665	A	G	4	47
BRCA	BR-MEX-041	LRRC43	SNP	Splice_site	12	122677294	C	T	31	47
BRCA	BR-MEX-041	KNTC1	SNP	Silent	12	123014664	G	C	45	41
BRCA	BR-MEX-041	SLCO1A2	SNP	Splice_site	12	21422702	C	G	32	73
BRCA	BR-MEX-041	PPFIBP1	SNP	Missense_Mutation	12	27832475	C	T	31	81
BRCA	BR-MEX-041	SLC38A4	SNP	Missense_Mutation	12	47186796	C	G	30	69
BRCA	BR-MEX-041	PPFIA2	SNP	Missense_Mutation	12	81777860	C	G	32	100
BRCA	BR-MEX-041	SLC7A1	SNP	Missense_Mutation	13	30110282	C	T	23	94
BRCA	BR-MEX-041	SOS2	SNP	Missense_Mutation	14	50626421	T	A	56	72
BRCA	BR-MEX-041	NIN	SNP	Missense_Mutation	14	51225191	C	G	29	89
BRCA	BR-MEX-041	NIN	SNP	Missense_Mutation	14	51226707	C	G	32	54
BRCA	BR-MEX-041	NIN	SNP	Missense_Mutation	14	51226849	C	G	29	58
BRCA	BR-MEX-041	KCNH5	SNP	Missense_Mutation	14	63468127	C	T	29	87
BRCA	BR-MEX-041	COQ6	SNP	Missense_Mutation	14	74428012	G	A	37	87
BRCA	BR-MEX-041	CDH16	SNP	Silent	16	66947083	G	A	33	49
BRCA	BR-MEX-041	HYDIN	SNP	Missense_Mutation	16	71101228	G	C	37	48
BRCA	BR-MEX-041	SLC38A8	SNP	Missense_Mutation	16	84050851	C	T	29	92
BRCA	BR-MEX-041	NUFIP2	SNP	Missense_Mutation	17	27620947	T	C	60	61
BRCA	BR-MEX-041	NMT1	SNP	Nonsense_Mutation	17	43159088	G	T	45	68
BRCA	BR-MEX-041	MYST2	SNP	Missense_Mutation	17	47875917	C	G	32	77
BRCA	BR-MEX-041	HELZ	SNP	Splice_site	17	65197247	C	T	32	82
BRCA	BR-MEX-041	SLC38A10	SNP	Silent	17	79256031	G	A	45	83
BRCA	BR-MEX-041	MYH10	SNP	Missense_Mutation	17	8387530	C	T	29	96
BRCA	BR-MEX-041	CDH2	SNP	Missense_Mutation	18	25532153	C	G	32	61
BRCA	BR-MEX-041	PIGN	SNP	Missense_Mutation	18	59814235	G	C	33	46
BRCA	BR-MEX-041	SUPT5H	SNP	Missense_Mutation	19	39964707	C	T	31	98
BRCA	BR-MEX-041	KBTBD10	SNP	Silent	2	170366387	C	T	31	52
BRCA	BR-MEX-041	PTH2R	SNP	Missense_Mutation	2	209324679	C	A	28	82
BRCA	BR-MEX-041	APOB	SNP	Silent	2	21258515	C	T	30	63
BRCA	BR-MEX-041	MSH6	SNP	Silent	2	48026379	G	A	33	80
BRCA	BR-MEX-041	CD93	SNP	Splice_site	20	23064588	C	G	29	76
BRCA	BR-MEX-041	BPIL1	SNP	Splice_Site	20	31606867	G	C	33	73
BRCA	BR-MEX-041	SERINC3	SNP	Missense_Mutation	20	43141599	C	T	29	44
BRCA	BR-MEX-041	IL10RB	SNP	Missense_Mutation	21	34668552	G	A	45	71
BRCA	BR-MEX-041	PDE9A	SNP	Splice_site	21	44195390	G	C	41	63
BRCA	BR-MEX-041	COL6A2	SNP	Missense_Mutation	21	47545434	G	C	33	73
BRCA	BR-MEX-041	MTMR1	SNP	Silent	23	149919276	G	A	41	53
BRCA	BR-MEX-041	YY2	SNP	Silent	23	21874647	C	T	30	50
BRCA	BR-MEX-041	ABCF3	SNP	Missense_Mutation	3	183905948	G	C	41	96
BRCA	BR-MEX-041	GRM7	SNP	Silent	3	6903534	G	A	45	53
BRCA	BR-MEX-041	SPOCK3	SNP	Missense_Mutation	4	167810330	G	C	42	65
BRCA	BR-MEX-041	C4orf41	SNP	Missense_Mutation	4	184614120	C	T	29	83
BRCA	BR-MEX-041	GIN1	SNP	Silent	5	102423863	G	C	33	45
BRCA	BR-MEX-041	BDP1	SNP	Nonsense_Mutation	5	70806547	C	T	17	44
BRCA	BR-MEX-041	GRIK2	SNP	Silent	6	101847189	C	G	32	79
BRCA	BR-MEX-041	HIST1H3B	SNP	Missense_Mutation	6	26032039	G	A	37	98
BRCA	BR-MEX-041	DOCK4	SNP	Missense_Mutation	7	111634237	T	C	58	85
BRCA	BR-MEX-041	NDUFA5	SNP	Missense_Mutation	7	123197081	G	A	43	51
BRCA	BR-MEX-041	CNTNAP2	SNP	Silent	7	147914405	G	T	41	44
BRCA	BR-MEX-041	SCRN1	SNP	Silent	7	29976189	T	C	62	63
BRCA	BR-MEX-041	HGF	SNP	Missense_Mutation	7	81346675	G	C	33	58
BRCA	BR-MEX-041	SET	SNP	Missense_Mutation	9	131454987	G	C	45	94
BRCA	BR-MEX-045	PRAMEF22	SNP	Missense_Mutation	1	13036604	T	A	60	57
BRCA	BR-MEX-045	FLG	SNP	Missense_Mutation	1	152279717	C	T	18	37
BRCA	BR-MEX-045	BCAN	SNP	Splice_site	1	156617302	G	T	44	79
BRCA	BR-MEX-045	FCRL5	DEL	Frame_Shift_Del	1	157494330	TGGGACGAGATAC	-	51	53
BRCA	BR-MEX-045	FCRL3	SNP	Missense_Mutation	1	157665981	T	A	54	47
BRCA	BR-MEX-045	BLZF1	SNP	Missense_Mutation	1	169346236	G	A	37	52
BRCA	BR-MEX-045	C1orf112	DEL	Splice_site	1	169773383	TGAGTGAAGAAA	-	59	83
BRCA	BR-MEX-045	GNB1	SNP	Synonymous	1	1721924	A	C	3	61
BRCA	BR-MEX-045	HMCN1	SNP	Splice_Site	1	186120483	T	A	57	88
BRCA	BR-MEX-045	KIF21B	SNP	Missense_Mutation	1	200956187	C	A	31	81
BRCA	BR-MEX-045	IRF6	SNP	Missense_Mutation	1	209961848	G	A	39	73
BRCA	BR-MEX-045	ESRRG	SNP	Missense_Mutation	1	216692560	A	G	16	94
BRCA	BR-MEX-045	CAPN2	SNP	De_novo_Start_OutOfFrame	1	223946021	C	T	19	46
BRCA	BR-MEX-045	SIPA1L2	SNP	Missense_Mutation	1	232650782	G	A	39	62
BRCA	BR-MEX-045	ERO1LB	SNP	Missense_Mutation	1	236413254	G	T	46	92
BRCA	BR-MEX-045	HEATR1	SNP	Nonsense_Mutation	1	236716967	G	A	48	100
BRCA	BR-MEX-045	RYR2	SNP	Missense_Mutation	1	237837467	A	G	1	91
BRCA	BR-MEX-045	VN1R5	SNP	Missense_Mutation	1	247420074	T	A	54	65
BRCA	BR-MEX-045	OR2G6	SNP	Missense_Mutation	1	248685732	C	T	23	65
BRCA	BR-MEX-045	LDLRAP1	SNP	Missense_Mutation	1	25889156	G	A	40	96
BRCA	BR-MEX-045	MFSD2A	SNP	Silent	1	40431548	G	C	47	68
BRCA	BR-MEX-045	KDM4A	SNP	Missense_Mutation	1	44154615	A	G	11	93
BRCA	BR-MEX-045	C8A	SNP	Silent	1	57372365	A	G	8	35
BRCA	BR-MEX-045	MSH4	SNP	Splice_Site	1	76343832	A	G	15	89
BRCA	BR-MEX-045	NRAP	SNP	Nonsense_Mutation	10	115381919	A	T	8	51
BRCA	BR-MEX-045	JAKMIP3	SNP	Splice_site	10	133966463	A	G	2	84
BRCA	BR-MEX-045	KNDC1	SNP	Missense_Mutation	10	135020435	G	C	34	72
BRCA	BR-MEX-045	MYO3A	SNP	Silent	10	26463033	C	G	24	42
BRCA	BR-MEX-045	BAMBI	SNP	Missense_Mutation	10	28971052	A	G	16	90
BRCA	BR-MEX-045	ANKRD30A	SNP	Missense_Mutation	10	37508262	G	T	33	69
BRCA	BR-MEX-045	TET1	SNP	Missense	10	70446335	G	A	42	53
BRCA	BR-MEX-045	H2AFY2	SNP	Missense_Mutation	10	71835575	A	G	11	93
BRCA	BR-MEX-045	POLR3A	SNP	Missense_Mutation	10	79741916	T	C	49	69
BRCA	BR-MEX-045	IDE	SNP	Nonsense_Mutation	10	94250283	G	C	48	53
BRCA	BR-MEX-045	PDE6C	SNP	Missense	10	95422914	C	G	25	61
BRCA	BR-MEX-045	KIAA1377	SNP	Missense_Mutation	11	101833376	A	T	1	60
BRCA	BR-MEX-045	DYNC2H1	SNP	Missense_Mutation	11	103047075	T	C	52	62
BRCA	BR-MEX-045	KBTBD3	SNP	Silent	11	105923736	A	G	8	52
BRCA	BR-MEX-045	OR5T3	SNP	Silent	11	56019879	C	A	24	51
BRCA	BR-MEX-045	ZP1	SNP	Silent	11	60643108	C	G	32	52
BRCA	BR-MEX-045	OR2D3	SNP	Missense_Mutation	11	6943218	G	C	35	55
BRCA	BR-MEX-045	PDE2A	SNP	Missense_Mutation	11	72289533	G	A	41	98
BRCA	BR-MEX-045	RAB6A	SNP	Missense_Mutation	11	73429898	C	T	19	97
BRCA	BR-MEX-045	TMEM132D	SNP	Silent	12	130184486	G	T	35	35
BRCA	BR-MEX-045	IRAK4	SNP	Silent	12	44172010	A	G	6	48
BRCA	BR-MEX-045	CLEC4D	SNP	Silent	12	8673843	A	G	1	55
BRCA	BR-MEX-045	FGD6	SNP	Silent	12	95479649	G	C	34	55
BRCA	BR-MEX-045	HSPH1	SNP	Splice_Site	13	31724320	C	A	24	96
BRCA	BR-MEX-045	FRY	SNP	Silent	13	32745177	C	A	27	99
BRCA	BR-MEX-045	RNASE4	SNP	Splice_site	14	21167533	G	T	47	77
BRCA	BR-MEX-045	ANGEL1	SNP	Missense_Mutation	14	77275857	C	G	31	57
BRCA	BR-MEX-045	DUOX2	SNP	Silent	15	45399610	G	A	40	45
BRCA	BR-MEX-045	IGDCC3	SNP	Missense_Mutation	15	65621395	T	C	54	57
BRCA	BR-MEX-045	LCTL	DEL	Splice_Site	15	66853654	CTGTGAACA	-	28	81
BRCA	BR-MEX-045	CLEC16A	SNP	Missense_Mutation	16	11217654	A	G	6	91
BRCA	BR-MEX-045	CHD9	SNP	Missense_Mutation	16	53190578	C	G	32	67
BRCA	BR-MEX-045	C16orf70	DEL	Frame_Shift_Del	16	67178764	A	-	6	49
BRCA	BR-MEX-045	FAM65A	SNP	Missense_Mutation	16	67578687	C	G	27	45
BRCA	BR-MEX-045	ADAD2	SNP	Missense_Mutation	16	84228910	C	A	27	57
BRCA	BR-MEX-045	FAM83G	SNP	Silent	17	18881761	G	A	48	64
BRCA	BR-MEX-045	STAC2	SNP	Silent	17	37381723	C	A	23	46
BRCA	BR-MEX-045	CASC3	SNP	Nonsense_Mutation	17	38325609	C	G	20	66
BRCA	BR-MEX-045	ATP2A3	SNP	Missense_Mutation	17	3851122	C	A	18	52
BRCA	BR-MEX-045	MYBBP1A	SNP	Silent	17	4444824	C	G	27	34
BRCA	BR-MEX-045	MED13	SNP	Missense_Mutation	17	60039032	G	A	42	97
BRCA	BR-MEX-045	ABCA9	DEL	Frame_Shift_Del	17	66980259	GTGGGTG	-	36	44
BRCA	BR-MEX-045	TP53	SNP	Missense_Mutation	17	7578268	A	T	3	88
BRCA	BR-MEX-045	ASPSCR1	SNP	Missense_Mutation	17	79952725	A	G	6	60
BRCA	BR-MEX-045	DUS1L	SNP	Missense_Mutation	17	80021368	C	T	31	89
BRCA	BR-MEX-045	SERPINB4	SNP	Missense_Mutation	18	61324517	A	G	1	81
BRCA	BR-MEX-045	CDH19	SNP	Missense_Mutation	18	64221662	A	T	1	88
BRCA	BR-MEX-045	HOMER3	SNP	Silent	19	19043828	G	A	47	60
BRCA	BR-MEX-045	ZNF486	SNP	Silent	19	20295221	C	T	26	47
BRCA	BR-MEX-045	LGI4	SNP	Missense_Mutation	19	35617881	G	C	38	48
BRCA	BR-MEX-045	ZNF180	SNP	Missense_Mutation	19	44983515	C	G	30	52
BRCA	BR-MEX-045	NANOS2	SNP	Missense_Mutation	19	46417638	C	G	18	93
BRCA	BR-MEX-045	MUC16	SNP	Missense_Mutation	19	9087026	C	G	24	54
BRCA	BR-MEX-045	RRM2	SNP	Silent	2	10263651	C	G	23	30
BRCA	BR-MEX-045	TGFBRAP1	SNP	Silent	2	105924129	C	T	27	49
BRCA	BR-MEX-045	INHBB	SNP	Missense_Mutation	2	121107161	T	G	62	88
BRCA	BR-MEX-045	DARS	SNP	Missense_Mutation	2	136719045	G	C	40	84
BRCA	BR-MEX-045	LRP1B	SNP	Missense_Mutation	2	141458185	T	G	63	89
BRCA	BR-MEX-045	STAM2	SNP	Missense_Mutation	2	152977246	T	C	57	33
BRCA	BR-MEX-045	PIKFYVE	SNP	Missense_Mutation	2	209190374	C	T	30	63
BRCA	BR-MEX-045	PTPRN	SNP	Splice_site	2	220164105	C	T	17	93
BRCA	BR-MEX-045	HDLBP	SNP	Silent	2	242179059	C	A	21	66
BRCA	BR-MEX-045	DQX1	SNP	Missense_Mutation	2	74751124	C	A	25	82
BRCA	BR-MEX-045	INPP4A	SNP	Missense_Mutation	2	99163107	G	C	36	51
BRCA	BR-MEX-045	FAM113A	SNP	Missense_Mutation	20	2819099	C	T	23	74
BRCA	BR-MEX-045	RPN2	SNP	Missense_Mutation	20	35812676	G	C	33	73
BRCA	BR-MEX-045	RALGAPB	SNP	Missense_Mutation	20	37174987	C	A	18	95
BRCA	BR-MEX-045	B4GALT5	SNP	Missense_Mutation	20	48252929	C	G	25	86
BRCA	BR-MEX-045	SRMS	SNP	Silent	20	62178712	G	A	44	52
BRCA	BR-MEX-045	RNF160	SNP	Missense_Mutation	21	30359077	T	G	56	87
BRCA	BR-MEX-045	APOBEC3F	SNP	Missense_Mutation	22	39448258	C	G	32	54
BRCA	BR-MEX-045	SREBF2	SNP	Missense_Mutation	22	42271637	C	G	30	100
BRCA	BR-MEX-045	CYBB	SNP	Missense_Mutation	23	37653044	T	G	64	70
BRCA	BR-MEX-045	LEKR1	SNP	Silent	3	156763425	A	G	12	54
BRCA	BR-MEX-045	BSN	SNP	Missense_Mutation	3	49699102	T	C	56	53
BRCA	BR-MEX-045	TACR3	SNP	Missense_Mutation	4	104510964	G	A	37	60
BRCA	BR-MEX-045	ARAP2	SNP	Silent	4	36212116	A	G	4	29
BRCA	BR-MEX-045	OCIAD2	SNP	Splice_site	4	48896023	G	C	40	57
BRCA	BR-MEX-045	CEP135	SNP	Missense_Mutation	4	56847402	G	A	33	70
BRCA	BR-MEX-045	UGT2A1	SNP	Silent	4	70513063	A	T	11	53
BRCA	BR-MEX-045	MAN2A1	SNP	Missense_Mutation	5	109153073	A	T	2	54
BRCA	BR-MEX-045	DMXL1	SNP	Silent	5	118505898	A	T	7	50
BRCA	BR-MEX-045	SEPT8	SNP	Missense_Mutation	5	132101185	C	T	23	100
BRCA	BR-MEX-045	PCDHB2	SNP	Missense_Mutation	5	140475366	G	A	41	53
BRCA	BR-MEX-045	LOC100268168	INS	In_frame_Ins	5	172381973	-	GGT	3	60
BRCA	BR-MEX-045	IL31RA	SNP	Splice_site	5	55178872	C	T	27	51
BRCA	BR-MEX-045	CD164	SNP	Missense	6	109699105	G	T	41	51
BRCA	BR-MEX-045	C6orf170	SNP	Missense_Mutation	6	121401947	G	T	48	55
BRCA	BR-MEX-045	EDN1	SNP	Silent	6	12290892	G	C	46	67
BRCA	BR-MEX-045	GRM1	SNP	Silent	6	146350890	G	T	47	78
BRCA	BR-MEX-045	TULP4	SNP	Nonsense_Mutation	6	158850868	C	G	29	100
BRCA	BR-MEX-045	MRS2	SNP	Missense_Mutation	6	24423200	G	A	48	90
BRCA	BR-MEX-045	HIST1H4G	SNP	Missense_Mutation	6	26246918	T	G	62	69
BRCA	BR-MEX-045	TNXB	SNP	Silent	6	32037553	G	T	43	41
BRCA	BR-MEX-045	PKHD1	SNP	Missense_Mutation	6	51612740	T	A	60	61
BRCA	BR-MEX-045	GABRR2	SNP	Silent	6	89967434	G	A	35	53
BRCA	BR-MEX-045	C6orf168	SNP	Missense_Mutation	6	99797158	C	T	23	78
BRCA	BR-MEX-045	NUP205	SNP	Missense_Mutation	7	135277850	G	C	36	63
BRCA	BR-MEX-045	LUC7L2	SNP	Missense_Mutation	7	139030337	G	C	48	53
BRCA	BR-MEX-045	CHPF2	SNP	Missense_Mutation	7	150932607	G	T	46	100
BRCA	BR-MEX-045	CARD11	SNP	Missense_Mutation	7	2963895	G	T	35	55
BRCA	BR-MEX-045	GGCT	SNP	Silent	7	30538452	G	A	40	48
BRCA	BR-MEX-045	CYTH3	SNP	Missense_Mutation	7	6205421	T	C	62	77
BRCA	BR-MEX-045	AKAP9	SNP	Silent	7	91645550	A	T	7	53
BRCA	BR-MEX-045	ZNF7	SNP	Missense_Mutation	8	146067241	A	T	14	50
BRCA	BR-MEX-045	MSR1	SNP	Missense_Mutation	8	16021738	C	G	19	50
BRCA	BR-MEX-045	SFTPC	SNP	Missense_Mutation	8	22021050	C	G	17	64
BRCA	BR-MEX-045	TEX15	SNP	Missense	8	30744766	G	T	36	52
BRCA	BR-MEX-045	NUP188	SNP	Missense_Mutation	9	131743563	G	C	33	56
BRCA	BR-MEX-045	BNC2	SNP	Missense_Mutation	9	16419457	A	C	11	76
BRCA	BR-MEX-045	C9orf131	SNP	Missense_Mutation	9	35044977	G	A	36	59
BRCA	BR-MEX-048	NLRP2	SNP	Missense_Mutation	19	55493760	G	C	33	44
BRCA	BR-MEX-048	DNER	SNP	Missense_Mutation	2	230231808	G	T	38	74
BRCA	BR-MEX-048	SSPO	SNP	Missense_Mutation	7	149518045	G	T	43	72
BRCA	BR-MEX-048	TUSC3	SNP	Silent	8	15397978	G	T	39	53
BRCA	BR-MEX-050	COL11A1	SNP	Missense_Mutation	1	103481250	G	A	41	82
BRCA	BR-MEX-050	ABL2	SNP	Missense_Mutation	1	179086640	G	C	34	85
BRCA	BR-MEX-050	C1orf35	INS	Frame_Shift_Ins	1	228289842	-	C	42	48
BRCA	BR-MEX-050	WDR64	SNP	Missense_Mutation	1	241901672	G	A	39	81
BRCA	BR-MEX-050	HNRNPU	SNP	Silent	1	245027169	G	A	40	49
BRCA	BR-MEX-050	NOLC1	SNP	Missense_Mutation	10	103912186	C	T	31	61
BRCA	BR-MEX-050	MTPAP	DEL	Start_Codon_Del	10	30638198	CCGCCATTGCT	-	18	64
BRCA	BR-MEX-050	CDH23	SNP	Missense_Mutation	10	73490340	C	A	21	72
BRCA	BR-MEX-050	PTEN	SNP	Splice_site	10	89653784	A	T	16	86
BRCA	BR-MEX-050	PTEN	DEL	Frame_Shift_Del	10	89692949	T	-	52	88
BRCA	BR-MEX-050	MAML2	SNP	Missense_Mutation	11	95826315	C	T	23	73
BRCA	BR-MEX-050	PNN	SNP	Missense	14	39648305	G	A	38	99
BRCA	BR-MEX-050	C14orf50	SNP	Silent	14	65054903	C	T	29	59
BRCA	BR-MEX-050	C2CD4A	SNP	Missense	15	62359815	G	T	48	64
BRCA	BR-MEX-050	SCAMP5	SNP	Missense_Mutation	15	75308942	G	A	40	64
BRCA	BR-MEX-050	CSPG4	SNP	Missense	15	75968564	C	T	31	51
BRCA	BR-MEX-050	PDZD9	SNP	Silent	16	21995657	A	G	8	56
BRCA	BR-MEX-050	HP	SNP	Synonymous	16	72094312	G	A	42	48
BRCA	BR-MEX-050	EPX	SNP	Missense_Mutation	17	56274358	C	T	31	81
BRCA	BR-MEX-050	ZNF627	SNP	Missense_Mutation	19	11725438	C	T	27	50
BRCA	BR-MEX-050	JUNB	SNP	Missense_Mutation	19	12902593	C	G	20	98
BRCA	BR-MEX-050	PAK4	DEL	In_frame_Del	19	39664276	TCC	-	58	60
BRCA	BR-MEX-050	HAS1	INS	Frame_Shift_Ins	19	52216941	-	C	42	58
BRCA	BR-MEX-050	BRSK1	SNP	Missense	19	55815456	C	T	30	90
BRCA	BR-MEX-050	DDX11L2	SNP	Missense	2	114357735	G	C	44	74
BRCA	BR-MEX-050	TTN	SNP	Silent	2	179578652	G	A	48	60
BRCA	BR-MEX-050	WNT10A	SNP	Silent	2	219754758	C	T	19	62
BRCA	BR-MEX-050	ASPRV1	SNP	Missense	2	70190393	G	T	43	62
BRCA	BR-MEX-050	PRPF6	SNP	Missense_Mutation	20	62626330	G	A	33	100
BRCA	BR-MEX-050	LONRF3	SNP	Missense_Mutation	23	118112409	C	T	23	73
BRCA	BR-MEX-050	UTP14A	SNP	Missense_Mutation	23	129054696	T	C	58	68
BRCA	BR-MEX-050	COL29A1	SNP	Nonsense	3	130098410	C	T	27	52
BRCA	BR-MEX-050	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-MEX-050	MUC4	SNP	Missense	3	195507395	T	C	59	36
BRCA	BR-MEX-050	SLC4A7	SNP	Missense_Mutation	3	27442271	C	T	32	51
BRCA	BR-MEX-050	ENTPD3	SNP	Silent	3	40442498	G	A	45	60
BRCA	BR-MEX-050	RBM15B	DEL	Frame_Shift_Del	3	51429530	G	-	38	56
BRCA	BR-MEX-050	ANKHD1-EIF4EBP3	SNP	Missense_Mutation	5	139917106	C	T	27	78
BRCA	BR-MEX-050	POU4F3	SNP	Silent	5	145719674	C	T	32	61
BRCA	BR-MEX-050	MAP3K1	DEL	Frame_Shift_Del	5	56177695	C	-	30	63
BRCA	BR-MEX-050	MAP3K1	SNP	Missense_Mutation	5	56184121	G	A	47	95
BRCA	BR-MEX-050	ZAN	SNP	Missense	7	100350394	T	C	52	45
BRCA	BR-MEX-050	ADAM32	SNP	Splice_site	8	39080559	A	G	12	37
BRCA	BR-MEX-055	DDX20	SNP	Missense_Mutation	1	112309267	C	T	27	65
BRCA	BR-MEX-055	OTUD7B	SNP	Missense_Mutation	1	149916196	T	A	49	57
BRCA	BR-MEX-055	LCE3E	SNP	Missense_Mutation	1	152538605	A	T	14	54
BRCA	BR-MEX-055	PEAR1	SNP	Missense_Mutation	1	156878726	C	A	32	80
BRCA	BR-MEX-055	FCRL1	SNP	Missense_Mutation	1	157772323	C	T	26	49
BRCA	BR-MEX-055	IFI16	SNP	Nonsense_Mutation	1	159021511	G	T	33	55
BRCA	BR-MEX-055	VANGL2	SNP	Missense_Mutation	1	160390304	G	C	36	66
BRCA	BR-MEX-055	POU2F1	SNP	Silent	1	167358992	C	T	29	67
BRCA	BR-MEX-055	TPR	SNP	Missense_Mutation	1	186310426	C	G	32	54
BRCA	BR-MEX-055	MKNK1	SNP	Nonsense_Mutation	1	47028390	G	T	44	76
BRCA	BR-MEX-055	HOOK1	SNP	Missense_Mutation	1	60299190	C	G	29	65
BRCA	BR-MEX-055	GRK5	SNP	Missense_Mutation	10	121182689	C	G	29	60
BRCA	BR-MEX-055	SLC39A12	SNP	Missense_Mutation	10	18242383	C	A	21	53
BRCA	BR-MEX-055	EPC1	SNP	Missense_Mutation	10	32582614	T	C	62	92
BRCA	BR-MEX-055	OR5T2	SNP	Missense_Mutation	11	56000165	T	C	57	82
BRCA	BR-MEX-055	OR8K3	SNP	Silent	11	56085884	C	A	32	62
BRCA	BR-MEX-055	OR5B2	SNP	Silent	11	58190591	C	T	29	37
BRCA	BR-MEX-055	AHNAK	SNP	Missense_Mutation	11	62293161	C	T	32	60
BRCA	BR-MEX-055	CEND1	SNP	Missense_Mutation	11	788363	G	C	33	77
BRCA	BR-MEX-055	TMEM132D	SNP	Missense_Mutation	12	129694156	G	A	39	96
BRCA	BR-MEX-055	COL2A1	SNP	Silent	12	48376658	G	A	39	49
BRCA	BR-MEX-055	OR8S1	SNP	Missense_Mutation	12	48920187	G	A	38	56
BRCA	BR-MEX-055	MLL2	SNP	Missense_Mutation	12	49431811	G	A	39	88
BRCA	BR-MEX-055	DNAJC14	SNP	Missense_Mutation	12	56221331	G	C	33	62
BRCA	BR-MEX-055	LRRC16B	SNP	Silent	14	24524963	C	T	31	40
BRCA	BR-MEX-055	FAM179B	SNP	Silent	14	45431823	C	T	32	74
BRCA	BR-MEX-055	LRRK1	SNP	Silent	15	101555552	G	T	37	50
BRCA	BR-MEX-055	CASC5	SNP	Missense_Mutation	15	40951571	G	A	46	63
BRCA	BR-MEX-055	TLN2	SNP	Missense_Mutation	15	63088449	G	A	43	86
BRCA	BR-MEX-055	RBPMS2	SNP	Silent	15	65043769	C	A	26	61
BRCA	BR-MEX-055	UBL7	SNP	Missense_Mutation	15	74743785	A	G	4	92
BRCA	BR-MEX-055	CHD2	SNP	Missense_Mutation	15	93510703	C	G	32	100
BRCA	BR-MEX-055	SRRM2	SNP	Missense_Mutation	16	2812969	C	T	19	68
BRCA	BR-MEX-055	SLFN12	SNP	Missense_Mutation	17	33738587	C	T	29	47
BRCA	BR-MEX-055	TNRC6C	SNP	Missense_Mutation	17	76073294	C	T	24	97
BRCA	BR-MEX-055	MYO5B	SNP	Silent	18	47488663	G	T	33	62
BRCA	BR-MEX-055	ATP8B3	SNP	Missense_Mutation	19	1790799	G	C	34	69
BRCA	BR-MEX-055	KCNN1	SNP	Missense_Mutation	19	18100615	C	T	31	93
BRCA	BR-MEX-055	ZNF493	SNP	Missense_Mutation	19	21606007	C	G	29	50
BRCA	BR-MEX-055	GPATCH1	SNP	Missense_Mutation	19	33588754	C	A	26	81
BRCA	BR-MEX-055	SIRT2	SNP	Missense_Mutation	19	39380352	C	G	30	83
BRCA	BR-MEX-055	BLOC1S3	SNP	Missense_Mutation	19	45683113	C	T	23	68
BRCA	BR-MEX-055	CLEC11A	SNP	Silent	19	51227335	C	T	31	41
BRCA	BR-MEX-055	ALPI	SNP	Silent	2	233323030	C	T	27	39
BRCA	BR-MEX-055	C2orf53	SNP	Missense_Mutation	2	27360083	C	T	31	28
BRCA	BR-MEX-055	GTF3C2	SNP	Missense_Mutation	2	27560354	G	C	33	86
BRCA	BR-MEX-055	LRRTM4	SNP	Missense_Mutation	2	77746592	G	A	33	83
BRCA	BR-MEX-055	C20orf94	SNP	Missense_Mutation	20	10603812	G	A	33	83
BRCA	BR-MEX-055	GGA1	SNP	Nonsense_Mutation	22	38028482	C	G	29	76
BRCA	BR-MEX-055	PPARA	SNP	Missense_Mutation	22	46615733	G	T	33	73
BRCA	BR-MEX-055	IL17REL	SNP	Splice_site	22	50439019	G	C	41	58
BRCA	BR-MEX-055	PLXNB2	SNP	Silent	22	50717369	G	A	33	62
BRCA	BR-MEX-055	SCO2	SNP	Silent	22	50962652	G	A	45	51
BRCA	BR-MEX-055	SCO2	SNP	Missense_Mutation	22	50962783	G	A	37	47
BRCA	BR-MEX-055	KIAA1210	SNP	Silent	23	118222670	T	C	53	45
BRCA	BR-MEX-055	GLUD2	SNP	Missense_Mutation	23	120182923	C	A	32	79
BRCA	BR-MEX-055	ZNF75D	SNP	Missense_Mutation	23	134421232	C	G	32	55
BRCA	BR-MEX-055	PLXNB3	SNP	Missense_Mutation	23	153032497	A	C	2	86
BRCA	BR-MEX-055	SSX5	SNP	Missense_Mutation	23	48054185	T	A	58	57
BRCA	BR-MEX-055	MAGEE1	SNP	Missense_Mutation	23	75650473	C	A	28	43
BRCA	BR-MEX-055	PCDH11X	SNP	Missense_Mutation	23	91132509	C	G	32	70
BRCA	BR-MEX-055	MORC1	SNP	Missense_Mutation	3	108677946	C	G	30	63
BRCA	BR-MEX-055	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	BR-MEX-055	TTC14	SNP	Missense_Mutation	3	180324382	G	C	33	100
BRCA	BR-MEX-055	CRIPAK	SNP	Missense_Mutation	4	1388843	G	A	40	74
BRCA	BR-MEX-055	C4orf41	SNP	Missense_Mutation	4	184615847	G	A	33	97
BRCA	BR-MEX-055	UGT2B10	SNP	Missense_Mutation	4	69682371	A	T	1	79
BRCA	BR-MEX-055	FSTL4	SNP	Missense_Mutation	5	132545909	C	T	19	52
BRCA	BR-MEX-055	DEPDC1B	SNP	Nonsense_Mutation	5	59940698	G	A	48	80
BRCA	BR-MEX-055	REPS1	SNP	Missense_Mutation	6	139226230	C	G	30	99
BRCA	BR-MEX-055	STX11	SNP	Silent	6	144508361	C	T	27	48
BRCA	BR-MEX-055	NHLRC1	SNP	Missense_Mutation	6	18122786	C	T	31	79
BRCA	BR-MEX-055	GPLD1	SNP	Missense_Mutation	6	24437470	C	T	23	79
BRCA	BR-MEX-055	TNXB	SNP	Missense_Mutation	6	32032795	G	T	48	55
BRCA	BR-MEX-055	SLC25A27	SNP	Nonsense_Mutation	6	46637948	C	T	19	57
BRCA	BR-MEX-055	RNGTT	SNP	Missense_Mutation	6	89322579	G	T	44	55
BRCA	BR-MEX-055	ZNF804B	SNP	Silent	7	88965620	T	C	50	55
BRCA	BR-MEX-055	CSMD3	SNP	Silent	8	113697828	G	A	45	54
BRCA	BR-MEX-055	ZNF707	SNP	Missense_Mutation	8	144776684	G	A	35	53
BRCA	BR-MEX-055	LAMC3	SNP	Silent	9	133942459	C	A	23	44
BRCA	BR-MEX-055	BNC2	SNP	Missense_Mutation	9	16419484	C	T	27	65
BRCA	BR-MEX-058	SLC9A3R1	SNP	Nonsense_Mutation	17	72745057	C	A	19	68
BRCA	BR-MEX-059	NR1I3	SNP	Silent	1	161199538	G	A	36	57
BRCA	BR-MEX-059	LMOD1	SNP	Missense_Mutation	1	201869835	C	G	24	52
BRCA	BR-MEX-059	SCNN1A	SNP	Missense_Mutation	12	6472688	C	T	31	48
BRCA	BR-MEX-059	GRTP1	SNP	Missense_Mutation	13	114009787	T	A	49	84
BRCA	BR-MEX-059	RASGRF1	SNP	Missense_Mutation	15	79350759	C	A	19	93
BRCA	BR-MEX-059	A2BP1	SNP	Missense_Mutation	16	7703846	G	A	38	93
BRCA	BR-MEX-059	MYOCD	SNP	Silent	17	12666490	G	A	39	38
BRCA	BR-MEX-059	TEKT3	SNP	Missense_Mutation	17	15231385	C	T	31	67
BRCA	BR-MEX-059	RAB11FIP5	SNP	Silent	2	73339525	G	C	47	52
BRCA	BR-MEX-059	IL2RB	SNP	Silent	22	37524286	G	A	40	44
BRCA	BR-MEX-059	TFDP3	SNP	Silent	23	132351202	C	T	31	46
BRCA	BR-MEX-059	MED12	SNP	Missense_Mutation	23	70362028	C	T	18	80
BRCA	BR-MEX-059	B4GALT4	SNP	Silent	3	118942961	G	A	48	62
BRCA	BR-MEX-059	?	SNP	Missense_Mutation	3	129127697	G	A	40	38
BRCA	BR-MEX-059	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	BR-MEX-059	HK3	SNP	Missense_Mutation	5	176318494	C	T	28	65
BRCA	BR-MEX-059	MAP3K1	SNP	Nonsense_Mutation	5	56189448	C	T	29	72
BRCA	BR-MEX-059	WASF1	SNP	Silent	6	110423083	T	C	57	48
BRCA	BR-MEX-059	TSPYL1	SNP	Missense_Mutation	6	116599741	C	A	31	71
BRCA	BR-MEX-059	SPAM1	SNP	Silent	7	123594443	T	A	55	36
BRCA	BR-MEX-059	AKAP9	SNP	Silent	7	91712957	G	T	45	62
BRCA	BR-MEX-059	RB1CC1	SNP	Missense_Mutation	8	53569070	G	C	36	51
BRCA	BR-MEX-059	ASPH	SNP	Missense_Mutation	8	62489375	G	A	40	67
BRCA	BR-MEX-059	MPDZ	SNP	Nonsense_Mutation	9	13192201	G	A	37	73
BRCA	BR-MEX-059	FAM78A	SNP	Missense_Mutation	9	134136633	G	T	44	66
BRCA	BR-MEX-059	SLC24A2	SNP	Missense_Mutation	9	19785967	C	T	19	84
BRCA	BR-MEX-071	KDM2A	SNP	Missense_Mutation	11	67020966	T	C	58	77
BRCA	BR-MEX-071	SLCO1A2	SNP	Silent	12	21427492	G	A	38	42
BRCA	BR-MEX-071	USP44	SNP	Silent	12	95914906	G	A	35	45
BRCA	BR-MEX-071	OR4N4	SNP	Missense_Mutation	15	22382990	A	C	7	48
BRCA	BR-MEX-071	CANT1	SNP	Missense	17	76993101	A	G	10	48
BRCA	BR-MEX-071	NKX2-4	SNP	Missense	20	21376754	C	A	25	79
BRCA	BR-MEX-071	RGL4	SNP	Splice_Site	22	24037135	A	T	15	61
BRCA	BR-MEX-071	ASPHD2	DEL	In_frame_Del	22	26829682	CCT	-	26	55
BRCA	BR-MEX-071	ZBTB33	SNP	Missense_Mutation	23	119387962	C	A	24	67
BRCA	BR-MEX-071	CNGA2	SNP	Silent	23	150912838	G	A	36	51
BRCA	BR-MEX-071	MTMR8	SNP	Missense	23	63563558	C	T	26	71
BRCA	BR-MEX-071	PGK1	SNP	Missense_Mutation	23	77380384	G	C	44	92
BRCA	BR-MEX-071	ZBTB38	SNP	Missense_Mutation	3	141162317	C	T	28	69
BRCA	BR-MEX-071	GABRA2	SNP	Silent	4	46314695	T	C	56	63
BRCA	BR-MEX-071	GRIK2	SNP	Synonymous	6	102266253	G	A	40	47
BRCA	BR-MEX-071	ZKSCAN4	SNP	Missense_Mutation	6	28213040	G	A	40	46
BRCA	BR-MEX-071	FLJ45340	SNP	Read-through	7	128292355	G	T	34	64
BRCA	BR-MEX-071	PKD1L1	SNP	Missense_Mutation	7	47945530	T	C	49	33
BRCA	BR-MEX-071	VPS13B	SNP	Missense_Mutation	8	100883728	G	T	44	61
BRCA	BR-MEX-071	NSMCE2	SNP	Missense_Mutation	8	126369472	G	C	34	52
BRCA	BR-MEX-073	ITLN2	SNP	Missense_Mutation	1	160920399	G	A	39	71
BRCA	BR-MEX-073	RASAL2	SNP	Missense_Mutation	1	178427045	G	A	38	78
BRCA	BR-MEX-073	FCN3	SNP	Missense_Mutation	1	27700892	C	T	23	74
BRCA	BR-MEX-073	SYNC	SNP	Missense_Mutation	1	33160687	C	A	30	69
BRCA	BR-MEX-073	CYP4A11	SNP	Missense_Mutation	1	47399641	G	C	35	58
BRCA	BR-MEX-073	KCNA4	SNP	Missense_Mutation	11	30032500	G	C	48	100
BRCA	BR-MEX-073	IGHMBP2	SNP	Nonsense_Mutation	11	68673544	C	T	25	85
BRCA	BR-MEX-073	INPPL1	SNP	Missense_Mutation	11	71941244	G	A	44	75
BRCA	BR-MEX-073	IFT81	SNP	Missense_Mutation	12	110566862	C	G	28	97
BRCA	BR-MEX-073	SLC25A3	SNP	Missense_Mutation	12	98989258	G	C	47	100
BRCA	BR-MEX-073	ATP11A	SNP	Silent	13	113508650	C	G	32	41
BRCA	BR-MEX-073	IGDCC3	SNP	Missense_Mutation	15	65621880	T	A	54	55
BRCA	BR-MEX-073	IFT140	SNP	Missense_Mutation	16	1614140	C	G	30	58
BRCA	BR-MEX-073	SLC38A8	SNP	Missense_Mutation	16	84050749	C	A	22	92
BRCA	BR-MEX-073	LGALS9	SNP	Missense_Mutation	17	25974429	A	G	4	76
BRCA	BR-MEX-073	MYO18A	SNP	Silent	17	27493670	G	A	35	74
BRCA	BR-MEX-073	TP53	SNP	Missense_Mutation	17	7578265	A	G	12	68
BRCA	BR-MEX-073	RPRD1A	SNP	Silent	18	33610797	G	A	33	65
BRCA	BR-MEX-073	DCC	SNP	Missense_Mutation	18	50936828	T	A	50	92
BRCA	BR-MEX-073	ZNF136	SNP	Nonsense_Mutation	19	12296973	C	T	23	59
BRCA	BR-MEX-073	MAP3K10	SNP	Missense_Mutation	19	40718847	C	G	30	92
BRCA	BR-MEX-073	PNMAL2	SNP	Missense_Mutation	19	46998617	C	G	31	52
BRCA	BR-MEX-073	SLC6A16	SNP	Missense_Mutation	19	49813714	G	A	33	63
BRCA	BR-MEX-073	MDH1B	SNP	Missense_Mutation	2	207619970	G	C	33	33
BRCA	BR-MEX-073	KIF1A	SNP	Splice_site	2	241657468	G	A	40	62
BRCA	BR-MEX-073	HK2	SNP	Missense_Mutation	2	75116482	G	A	39	94
BRCA	BR-MEX-073	LRRTM4	SNP	Missense_Mutation	2	77746805	G	C	48	75
BRCA	BR-MEX-073	ZNF2	SNP	Missense_Mutation	2	95847742	G	A	40	94
BRCA	BR-MEX-073	ProSAPiP1	SNP	Missense_Mutation	20	3146450	C	T	23	83
BRCA	BR-MEX-073	IL3RA	SNP	Missense_Mutation	23	1499941	C	T	30	61
BRCA	BR-MEX-073	CDKL5	SNP	Missense_Mutation	23	18622026	C	A	21	96
BRCA	BR-MEX-073	TAF1	SNP	Silent	23	70678123	C	T	29	56
BRCA	BR-MEX-073	ATP2B2	SNP	Missense_Mutation	3	10413573	G	T	43	84
BRCA	BR-MEX-073	TNK2	SNP	Missense_Mutation	3	195595194	C	T	29	98
BRCA	BR-MEX-073	RAD54L2	SNP	Missense_Mutation	3	51667964	C	A	21	98
BRCA	BR-MEX-073	DCP1A	SNP	Missense_Mutation	3	53326725	C	G	32	82
BRCA	BR-MEX-073	ANK2	SNP	Silent	4	114275201	G	A	40	37
BRCA	BR-MEX-073	PPID	SNP	Silent	4	159636792	G	A	40	47
BRCA	BR-MEX-073	BMP3	SNP	Missense_Mutation	4	81967348	G	A	34	82
BRCA	BR-MEX-073	ZBTB2	SNP	Missense_Mutation	6	151687617	G	A	45	65
BRCA	BR-MEX-073	EXOC2	SNP	Missense_Mutation	6	633074	C	G	30	97
BRCA	BR-MEX-073	PHF3	SNP	Missense_Mutation	6	64395532	A	G	4	43
BRCA	BR-MEX-073	ACHE	SNP	Missense_Mutation	7	100491412	A	C	7	88
BRCA	BR-MEX-073	PLEC	SNP	Silent	8	145007436	G	A	41	75
BRCA	BR-MEX-073	SEC61B	SNP	Missense_Mutation	9	101990253	C	G	32	72
BRCA	BR-MEX-074	POLR2A	SNP	Missense_Mutation	17	7412890	A	G	4	86
BRCA	BR-MEX-074	ATP1B2	SNP	Silent	17	7557506	C	T	23	45
BRCA	BR-MEX-074	MOBKL3	SNP	Missense_Mutation	2	198405091	A	G	12	92
BRCA	BR-MEX-074	SLC13A3	SNP	Missense_Mutation	20	45188672	G	A	37	54
BRCA	BR-MEX-074	ZBED4	SNP	Missense_Mutation	22	50277525	G	A	43	70
BRCA	BR-MEX-074	ZBED4	SNP	Nonsense_Mutation	22	50277824	G	T	41	96
BRCA	BR-MEX-074	ZBED4	SNP	Missense_Mutation	22	50278112	G	C	33	96
BRCA	BR-MEX-074	ZBED4	SNP	Missense_Mutation	22	50278306	G	C	41	97
BRCA	BR-MEX-074	ZBED4	SNP	Missense_Mutation	22	50278672	G	C	45	96
BRCA	BR-MEX-074	ZBED4	SNP	Missense_Mutation	22	50278829	G	C	33	74
BRCA	BR-MEX-074	ZBED4	SNP	Silent	22	50279872	G	T	41	48
BRCA	BR-MEX-074	ZBED4	SNP	Missense_Mutation	22	50280163	G	A	48	52
BRCA	BR-MEX-074	ZBED4	SNP	Missense_Mutation	22	50280238	G	A	47	84
BRCA	BR-MEX-074	ZBED4	SNP	Missense_Mutation	22	50280605	G	T	45	96
BRCA	BR-MEX-074	WDR53	SNP	Missense_Mutation	3	196287976	T	G	62	74
BRCA	BR-MEX-074	NEK10	SNP	Silent	3	27204069	G	A	33	66
BRCA	BR-MEX-074	TMIE	SNP	Missense_Mutation	3	46750683	C	T	18	57
BRCA	BR-MEX-074	UIMC1	SNP	Missense_Mutation	5	176335648	T	C	49	81
BRCA	BR-MEX-074	DNAH8	SNP	Missense_Mutation	6	38747771	G	A	41	58
BRCA	BR-MEX-074	AKR1B1	SNP	Silent	7	134133183	G	A	37	46
BRCA	BR-MEX-074	CARD11	SNP	Missense_Mutation	7	2955003	C	T	19	91
BRCA	BR-MEX-074	LY6K	SNP	Missense_Mutation	8	143784772	G	A	39	46
BRCA	BR-MEX-076	GSTM4	SNP	Missense_Mutation	1	110199344	C	T	26	71
BRCA	BR-MEX-076	TAS1R3	SNP	Missense_Mutation	1	1267968	G	A	46	45
BRCA	BR-MEX-076	HMCN1	SNP	Nonsense_Mutation	1	186141251	G	T	47	100
BRCA	BR-MEX-076	LAPTM5	SNP	Splice_site	1	31215304	G	A	37	27
BRCA	BR-MEX-076	CC2D2B	SNP	Silent	10	97772306	G	A	35	49
BRCA	BR-MEX-076	SLC35C1	SNP	Missense_Mutation	11	45832362	G	A	33	69
BRCA	BR-MEX-076	GPR133	SNP	Missense_Mutation	12	131569089	G	A	39	67
BRCA	BR-MEX-076	POSTN	SNP	Silent	13	38164611	C	T	27	25
BRCA	BR-MEX-076	TCEB3B	SNP	Missense_Mutation	18	44560981	C	T	28	54
BRCA	BR-MEX-076	ZNF700	SNP	Missense_Mutation	19	12058091	G	A	46	52
BRCA	BR-MEX-076	ZNF614	SNP	Silent	19	52520440	C	T	29	47
BRCA	BR-MEX-076	TTN	SNP	Missense_Mutation	2	179455788	C	T	17	100
BRCA	BR-MEX-076	TTC15	SNP	Missense_Mutation	2	3391908	G	T	39	54
BRCA	BR-MEX-076	C20orf7	SNP	Missense_Mutation	20	13797553	G	A	46	90
BRCA	BR-MEX-076	KCNB1	SNP	Silent	20	47991242	G	A	38	47
BRCA	BR-MEX-076	HS6ST2	SNP	Missense_Mutation	23	132092463	C	A	22	71
BRCA	BR-MEX-076	ARHGAP31	SNP	Missense_Mutation	3	119132887	G	A	48	50
BRCA	BR-MEX-076	MATR3	SNP	Missense_Mutation	5	138651827	C	T	24	87
BRCA	BR-MEX-076	ODZ2	SNP	Silent	5	167545427	C	T	19	52
BRCA	BR-MEX-076	HRH2	SNP	Missense_Mutation	5	175111197	G	A	38	49
BRCA	BR-MEX-076	RAET1E	SNP	Splice_site	6	150209805	T	A	53	55
BRCA	BR-MEX-076	HIST1H4L	SNP	Missense_Mutation	6	27841279	G	A	38	75
BRCA	BR-MEX-076	SRRT	SNP	Missense_Mutation	7	100483922	C	T	31	97
BRCA	BR-MEX-076	MLL3	SNP	Missense_Mutation	7	151874320	T	A	60	71
BRCA	BR-MEX-076	MYO1G	SNP	Silent	7	45004035	G	C	33	53
BRCA	BR-MEX-076	COL14A1	SNP	Silent	8	121240956	T	C	60	55
BRCA	BR-MEX-076	PDE7A	SNP	Missense_Mutation	8	66647072	G	T	38	100
BRCA	BR-MEX-076	DFNB31	SNP	Missense_Mutation	9	117240877	G	A	39	58
BRCA	BR-MEX-076	ASB6	SNP	Missense_Mutation	9	132401701	C	T	31	73
BRCA	BR-MEX-079	ZBTB40	SNP	Missense_Mutation	1	22850840	T	C	54	83
BRCA	BR-MEX-079	DPH2	SNP	Missense_Mutation	1	44437404	G	A	35	84
BRCA	BR-MEX-079	ALOX5	SNP	Missense_Mutation	10	45935921	C	T	31	83
BRCA	BR-MEX-079	SLCO1B1	SNP	Missense_Mutation	12	21358884	C	T	18	78
BRCA	BR-MEX-079	C1R	SNP	Silent	12	7188021	G	A	33	49
BRCA	BR-MEX-079	TUBGCP3	SNP	Missense_Mutation	13	113200046	T	C	49	44
BRCA	BR-MEX-079	C14orf106	SNP	Missense_Mutation	14	45686285	C	G	20	48
BRCA	BR-MEX-079	NR1D1	SNP	Missense_Mutation	17	38252820	G	C	41	61
BRCA	BR-MEX-079	TOB1	SNP	Missense_Mutation	17	48940457	C	G	29	100
BRCA	BR-MEX-079	CA4	SNP	Missense_Mutation	17	58235068	G	C	33	60
BRCA	BR-MEX-079	CA4	SNP	Splice_Site	17	58235643	G	C	33	69
BRCA	BR-MEX-079	CA4	SNP	Missense_Mutation	17	58235754	G	A	45	81
BRCA	BR-MEX-079	ANKRD27	SNP	Missense_Mutation	19	33130281	C	T	28	51
BRCA	BR-MEX-079	KCNC3	SNP	Silent	19	50824019	C	T	23	37
BRCA	BR-MEX-079	ZNF470	SNP	Silent	19	57089897	C	T	23	31
BRCA	BR-MEX-079	ZNF548	SNP	Missense_Mutation	19	57910576	G	T	42	53
BRCA	BR-MEX-079	TTN	SNP	Nonsense_Mutation	2	179413852	G	T	45	87
BRCA	BR-MEX-079	ERBB4	SNP	Missense_Mutation	2	212295779	G	A	46	100
BRCA	BR-MEX-079	WNT6	SNP	Missense_Mutation	2	219735954	C	T	19	70
BRCA	BR-MEX-079	CUL3	SNP	Missense_Mutation	2	225378312	G	C	33	78
BRCA	BR-MEX-079	CPXM1	SNP	Silent	20	2775013	C	T	24	53
BRCA	BR-MEX-079	SRC	SNP	Silent	20	36024599	C	T	19	48
BRCA	BR-MEX-079	PLCG1	SNP	Missense_Mutation	20	39788290	C	G	19	68
BRCA	BR-MEX-079	DGCR8	SNP	Silent	22	20094217	G	C	44	58
BRCA	BR-MEX-079	PCDHGA1	SNP	Silent	5	140711919	C	T	19	49
BRCA	BR-MEX-079	MFAP3	SNP	Missense_Mutation	5	153432607	C	G	32	65
BRCA	BR-MEX-079	MLLT4	SNP	Missense_Mutation	6	168352469	C	T	27	47
BRCA	BR-MEX-079	OR2J2	SNP	Silent	6	29142018	C	T	29	49
BRCA	BR-MEX-079	FLOT1	SNP	Missense_Mutation	6	30697915	G	T	36	58
BRCA	BR-MEX-079	CADPS2	SNP	Missense_Mutation	7	122303521	G	A	38	76
BRCA	BR-MEX-079	SAMD9L	SNP	Missense_Mutation	7	92761293	T	A	56	46
BRCA	BR-MEX-079	MYST3	SNP	Missense_Mutation	8	41832263	C	G	32	98
BRCA	BR-MEX-080	PKLR	SNP	Missense_Mutation	1	155262972	C	A	21	90
BRCA	BR-MEX-080	SERPINA13	SNP	Silent	14	95107786	G	C	46	53
BRCA	BR-MEX-080	C15orf24	SNP	Silent	15	34393816	G	A	37	56
BRCA	BR-MEX-080	RNF165	SNP	Missense_Mutation	18	44013381	C	T	30	99
BRCA	BR-MEX-080	ATP8B3	SNP	Splice_site	19	1796712	G	T	47	51
BRCA	BR-MEX-080	CHD6	SNP	Missense_Mutation	20	40076550	C	T	29	74
BRCA	BR-MEX-080	SYCP2	SNP	Nonsense_Mutation	20	58470563	T	A	53	45
BRCA	BR-MEX-080	YTHDF1	SNP	Missense_Mutation	20	61834903	G	A	45	99
BRCA	BR-MEX-082	OVGP1	SNP	Missense	1	111968089	G	C	34	50
BRCA	BR-MEX-082	BCL9	SNP	Missense	1	147092545	C	A	22	77
BRCA	BR-MEX-082	PYHIN1	SNP	Synonymous	1	158908938	G	T	42	44
BRCA	BR-MEX-082	FAIM3	SNP	Missense	1	207083674	T	A	49	43
BRCA	BR-MEX-082	AHCTF1	SNP	Missense	1	247013167	T	A	60	47
BRCA	BR-MEX-082	TTC39A	SNP	Missense	1	51754596	T	G	50	73
BRCA	BR-MEX-082	CELF2	DNP	Missense	10	11308573	TC	CA	58	93
BRCA	BR-MEX-082	SFMBT2	SNP	Missense	10	7327874	C	G	19	54
BRCA	BR-MEX-082	POLR3A	SNP	Missense	10	79737244	C	G	17	64
BRCA	BR-MEX-082	CTNND1	SNP	Missense	11	57559072	T	C	55	88
BRCA	BR-MEX-082	ITPR2	SNP	Missense	12	26875391	C	A	30	98
BRCA	BR-MEX-082	KCNA6	SNP	Missense	12	4920318	G	A	42	98
BRCA	BR-MEX-082	COPZ1	SNP	Missense	12	54736018	A	G	3	87
BRCA	BR-MEX-082	CDKN3	DEL	In_frame_Del	14	54884655	ATACAGACC	-	4	84
BRCA	BR-MEX-082	DLST	INS	Frame_Shift_Ins	14	75367834	-	G	27	24
BRCA	BR-MEX-082	DIO2	SNP	Missense	14	80669502	C	A	25	100
BRCA	BR-MEX-082	THBS1	SNP	Synonymous	15	39882794	C	T	19	28
BRCA	BR-MEX-082	PTPLAD1	SNP	Missense	15	65856634	C	T	25	99
BRCA	BR-MEX-082	PRKCB	SNP	Missense	16	24192164	C	A	26	100
BRCA	BR-MEX-082	AMFR	INS	Frame_Shift_Ins	16	56442017	-	GAGA	27	46
BRCA	BR-MEX-082	SREBF1	DEL	In_frame_Del	17	17722977	CCCCTGGCGGGG	-	18	58
BRCA	BR-MEX-082	TBX21	SNP	Nonsense	17	45822279	C	G	20	52
BRCA	BR-MEX-082	MYO15B	SNP	Missense	17	73587276	C	T	29	75
BRCA	BR-MEX-082	APCDD1	SNP	Missense	18	10487850	A	G	9	87
BRCA	BR-MEX-082	ALPK2	SNP	Missense	18	56204606	C	G	30	46
BRCA	BR-MEX-082	TYMS	SNP	Missense	18	672975	T	A	52	90
BRCA	BR-MEX-082	GATAD2A	SNP	Missense	19	19576209	C	A	22	55
BRCA	BR-MEX-082	SLC7A10	SNP	Missense	19	33706778	C	T	19	50
BRCA	BR-MEX-082	PSG9	SNP	Missense	19	43766108	A	C	4	43
BRCA	BR-MEX-082	LILRA2	SNP	Missense	19	55089013	C	G	31	45
BRCA	BR-MEX-082	IL1RL1	SNP	Missense	2	102959580	C	A	17	25
BRCA	BR-MEX-082	UGT1A8	SNP	Missense	2	234526537	G	C	44	76
BRCA	BR-MEX-082	ACTG2	SNP	Missense	2	74140693	G	A	38	97
BRCA	BR-MEX-082	FAHD2B	INS	Frame_Shift_Ins	2	97751497	-	C	62	55
BRCA	BR-MEX-082	ZFP64	SNP	Missense	20	50769895	C	T	23	100
BRCA	BR-MEX-082	CTCFL	SNP	Missense	20	56071378	C	G	26	53
BRCA	BR-MEX-082	TPTE	SNP	Missense	21	10951372	T	C	52	24
BRCA	BR-MEX-082	MTM1	SNP	Missense	23	149783096	T	A	59	65
BRCA	BR-MEX-082	SPSB4	SNP	Missense	3	140851037	T	C	58	51
BRCA	BR-MEX-082	IGSF10	SNP	Missense	3	151171257	G	T	44	48
BRCA	BR-MEX-082	WDR53	SNP	Missense	3	196281555	A	C	9	91
BRCA	BR-MEX-082	TOP2B	SNP	Nonsense	3	25662180	C	T	21	100
BRCA	BR-MEX-082	ARPC4	SNP	Synonymous	3	9896269	A	T	6	51
BRCA	BR-MEX-082	ZNF330	SNP	Missense	4	142152613	G	T	47	100
BRCA	BR-MEX-082	CDKN2AIP	SNP	Synonymous	4	184367593	G	T	45	77
BRCA	BR-MEX-082	EXOC1	SNP	Missense	4	56726616	T	G	58	89
BRCA	BR-MEX-082	ABLIM2	DEL	Frame_Shift_Del	4	7985031	CGAAT	-	27	79
BRCA	BR-MEX-082	PRKG2	SNP	Missense	4	82058628	C	T	19	100
BRCA	BR-MEX-082	PCDHGA8	SNP	Missense	5	140772870	G	T	40	48
BRCA	BR-MEX-082	DUSP1	SNP	Splice_Site_SNP	5	172197163	C	A	18	91
BRCA	BR-MEX-082	RICTOR	SNP	Synonymous	5	38952392	G	C	33	58
BRCA	BR-MEX-082	DEPDC1B	SNP	Missense	5	59899366	A	G	5	89
BRCA	BR-MEX-082	MAP3K4	SNP	Missense	6	161469725	A	C	13	77
BRCA	BR-MEX-082	OR2J3	SNP	Synonymous	6	29079871	C	T	18	57
BRCA	BR-MEX-082	DPCR1	SNP	Missense	6	30918445	C	A	21	49
BRCA	BR-MEX-082	DPCR1	SNP	Missense	6	30918477	A	T	3	50
BRCA	BR-MEX-082	COL19A1	SNP	Missense	6	70859771	G	A	41	79
BRCA	BR-MEX-082	KCP	DEL	In_frame_Del	7	128529074	CTC	-	20	49
BRCA	BR-MEX-082	MLL3	SNP	Missense	7	151873719	G	T	47	63
BRCA	BR-MEX-082	ZNF713	SNP	Missense	7	56007296	G	C	41	88
BRCA	BR-MEX-082	BAZ1B	SNP	Synonymous	7	72857108	C	T	20	68
BRCA	BR-MEX-082	WBSCR22	SNP	Missense	7	73111938	C	G	30	51
BRCA	BR-MEX-082	RB1CC1	SNP	Missense	8	53586672	A	C	16	54
BRCA	BR-MEX-082	TERF1	SNP	Missense	8	73951368	G	C	33	48
BRCA	BR-MEX-082	OR13C2	SNP	Splice_site	9	107367908	T	C	52	55
BRCA	BR-MEX-082	COL5A1	SNP	Synonymous	9	137734038	C	T	31	54
BRCA	BR-MEX-082	SEC16A	SNP	Synonymous	9	139369377	A	T	11	50
BRCA	BR-MEX-082	PAX5	SNP	Missense	9	36846895	G	C	44	69
BRCA	BR-MEX-082	KIAA2026	SNP	Missense	9	5920273	C	T	28	82
BRCA	BR-MEX-083	CTBS	SNP	Missense_Mutation	1	85035691	A	T	12	64
BRCA	BR-MEX-083	PITRM1	SNP	Missense_Mutation	10	3185630	C	T	19	59
BRCA	BR-MEX-083	CRTAC1	SNP	Missense_Mutation	10	99667781	G	T	38	100
BRCA	BR-MEX-083	RASSF8	SNP	Nonsense_Mutation	12	26217464	G	A	47	96
BRCA	BR-MEX-083	NOD2	SNP	Missense_Mutation	16	50733697	C	A	18	56
BRCA	BR-MEX-083	RUNDC3A	SNP	Missense_Mutation	17	42389988	C	A	26	93
BRCA	BR-MEX-083	MYBPC2	SNP	Missense_Mutation	19	50951610	C	T	27	56
BRCA	BR-MEX-083	PDE1A	SNP	Missense_Mutation	2	183104997	C	T	29	84
BRCA	BR-MEX-083	C2orf71	SNP	Silent	2	29294461	C	A	21	47
BRCA	BR-MEX-083	NFATC2	SNP	Missense_Mutation	20	50158974	C	G	26	53
BRCA	BR-MEX-083	SLC6A8	SNP	Missense_Mutation	23	152958807	C	A	17	81
BRCA	BR-MEX-083	PIK3CA	SNP	Missense_Mutation	3	178936082	G	C	45	98
BRCA	BR-MEX-083	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-MEX-083	UST	SNP	Missense_Mutation	6	149285692	G	A	38	100
BRCA	BR-MEX-083	SHH	SNP	Missense_Mutation	7	155599092	C	T	31	93
BRCA	BR-MEX-083	SLC27A4	SNP	Missense_Mutation	9	131117422	A	T	3	87
BRCA	BR-MEX-085	HORMAD1	SNP	Splice_Site	1	150692015	C	G	24	67
BRCA	BR-MEX-085	DISC1	SNP	Missense_Mutation	1	231829724	G	A	37	41
BRCA	BR-MEX-085	OR52B4	SNP	Missense_Mutation	11	4389164	G	A	42	84
BRCA	BR-MEX-085	PRB2	SNP	Silent	12	11545992	T	G	59	65
BRCA	BR-MEX-085	TP53	SNP	Missense_Mutation	17	7577120	C	T	19	94
BRCA	BR-MEX-085	CBLN4	SNP	Missense_Mutation	20	54575811	T	A	56	63
BRCA	BR-MEX-085	TBC1D25	SNP	Missense_Mutation	23	48417682	A	T	11	84
BRCA	BR-MEX-085	RASA2	SNP	Missense_Mutation	3	141289831	G	A	48	68
BRCA	BR-MEX-085	CDH9	SNP	Missense_Mutation	5	26886144	G	T	45	99
BRCA	BR-MEX-085	DBNL	SNP	Missense_Mutation	7	44098543	A	T	11	51
BRCA	BR-MEX-085	FREM1	SNP	Nonsense_Mutation	9	14824909	C	A	30	99
BRCA	BR-MEX-094	FBXO34	SNP	Missense_Mutation	14	55817665	A	G	6	66
BRCA	BR-MEX-094	RYR3	SNP	Missense_Mutation	15	33952543	G	A	40	76
BRCA	BR-MEX-094	ZNF592	SNP	Missense_Mutation	15	85326423	C	G	32	52
BRCA	BR-MEX-094	MSLNL	SNP	Missense_Mutation	16	824957	C	T	27	59
BRCA	BR-MEX-094	ERBB2	SNP	Missense_Mutation	17	37868208	C	T	30	84
BRCA	BR-MEX-094	MPO	SNP	Silent	17	56350896	G	A	40	41
BRCA	BR-MEX-094	EIF4A1	SNP	Splice_site	17	7476181	C	T	23	75
BRCA	BR-MEX-094	TP53	SNP	Splice_Site	17	7577498	C	T	18	92
BRCA	BR-MEX-094	BARD1	SNP	Silent	2	215593598	G	A	40	41
BRCA	BR-MEX-094	SLC8A1	SNP	Missense_Mutation	2	40342532	C	T	23	98
BRCA	BR-MEX-094	PKDREJ	SNP	Missense_Mutation	22	46658562	C	T	19	58
BRCA	BR-MEX-094	ARMCX1	SNP	Missense_Mutation	23	100807953	G	T	48	56
BRCA	BR-MEX-094	EGFL6	SNP	Missense_Mutation	23	13635996	C	G	24	68
BRCA	BR-MEX-094	OGFRL1	SNP	Missense_Mutation	6	72011310	C	T	19	54
BRCA	BR-MEX-094	CALD1	SNP	Silent	7	134613550	G	C	43	50
BRCA	BR-MEX-094	FAM188B	SNP	Missense_Mutation	7	30831018	T	G	51	37
BRCA	BR-MEX-094	SDK1	SNP	Missense_Mutation	7	4153028	C	T	19	74
BRCA	BR-MEX-095	PDE4DIP	SNP	Silent	1	144917846	T	C	62	32
BRCA	BR-MEX-095	PGLYRP4	SNP	Missense_Mutation	1	153312954	C	T	23	59
BRCA	BR-MEX-095	ACTL8	SNP	Silent	1	18149722	C	A	29	55
BRCA	BR-MEX-095	FAM129A	SNP	Silent	1	184764813	G	A	39	47
BRCA	BR-MEX-095	GRHL3	SNP	Silent	1	24663056	G	T	48	54
BRCA	BR-MEX-095	HPSE2	SNP	Nonsense_Mutation	10	100219336	G	A	39	69
BRCA	BR-MEX-095	FAM171A1	SNP	Missense_Mutation	10	15255726	G	T	41	76
BRCA	BR-MEX-095	HNRNPF	SNP	Missense_Mutation	10	43882356	C	G	32	94
BRCA	BR-MEX-095	C10orf18	SNP	Splice_site	10	5762718	A	G	10	51
BRCA	BR-MEX-095	ZW10	SNP	Missense_Mutation	11	113618285	G	T	33	65
BRCA	BR-MEX-095	FAM55D	SNP	Missense_Mutation	11	114453117	G	C	33	55
BRCA	BR-MEX-095	AP2A2	SNP	Missense_Mutation	11	992650	G	A	37	94
BRCA	BR-MEX-095	FOXN4	SNP	Silent	12	109723308	G	C	39	40
BRCA	BR-MEX-095	KSR2	SNP	Missense_Mutation	12	118298119	C	A	31	69
BRCA	BR-MEX-095	P2RX2	SNP	Silent	12	133197592	T	A	59	43
BRCA	BR-MEX-095	KIAA0528	SNP	Missense_Mutation	12	22680778	C	T	29	100
BRCA	BR-MEX-095	CAPRIN2	SNP	Missense_Mutation	12	30906385	G	T	46	76
BRCA	BR-MEX-095	GALNT8	SNP	Missense_Mutation	12	4870192	C	A	17	53
BRCA	BR-MEX-095	ERBB3	SNP	Missense_Mutation	12	56492633	A	G	11	92
BRCA	BR-MEX-095	CHD4	SNP	Nonsense_Mutation	12	6682372	C	A	32	78
BRCA	BR-MEX-095	C13orf28	SNP	Missense_Mutation	13	113030776	C	T	23	58
BRCA	BR-MEX-095	LPCAT4	SNP	Missense_Mutation	15	34651440	C	T	27	61
BRCA	BR-MEX-095	TCF12	SNP	Missense_Mutation	15	57565320	G	A	38	98
BRCA	BR-MEX-095	LINGO1	SNP	Missense_Mutation	15	77906689	G	C	36	70
BRCA	BR-MEX-095	ERBB2	SNP	Missense_Mutation	17	37868208	C	T	30	84
BRCA	BR-MEX-095	ACE	SNP	Nonsense_Mutation	17	61573804	C	T	21	65
BRCA	BR-MEX-095	TP53	SNP	Missense_Mutation	17	7577141	C	T	30	95
BRCA	BR-MEX-095	KRI1	SNP	Missense_Mutation	19	10671066	C	T	23	92
BRCA	BR-MEX-095	OR7A5	SNP	Missense_Mutation	19	14938936	G	T	34	34
BRCA	BR-MEX-095	ZNF222	SNP	Missense_Mutation	19	44537137	G	A	38	52
BRCA	BR-MEX-095	TULP2	SNP	Missense_Mutation	19	49399708	C	T	30	59
BRCA	BR-MEX-095	SIGLEC12	SNP	Missense_Mutation	19	52003444	A	T	7	55
BRCA	BR-MEX-095	ZNF549	SNP	Nonsense_Mutation	19	58049504	C	T	31	37
BRCA	BR-MEX-095	EVI5L	SNP	Missense_Mutation	19	7928128	C	G	23	72
BRCA	BR-MEX-095	SULT1C4	SNP	Missense_Mutation	2	108999892	G	A	45	82
BRCA	BR-MEX-095	PCDP1	SNP	Silent	2	120388157	G	A	48	49
BRCA	BR-MEX-095	ARHGAP25	SNP	Nonsense_Mutation	2	69049955	C	T	19	59
BRCA	BR-MEX-095	RBM11	SNP	Silent	21	15599275	C	G	23	42
BRCA	BR-MEX-095	SLC5A4	SNP	Splice_Site	22	32644729	C	G	18	86
BRCA	BR-MEX-095	ZMAT1	SNP	Missense_Mutation	23	101152931	G	A	45	75
BRCA	BR-MEX-095	CHRDL1	SNP	Missense_Mutation	23	109924783	C	A	32	52
BRCA	BR-MEX-095	ARX	SNP	Missense_Mutation	23	25031063	G	T	40	78
BRCA	BR-MEX-095	FAM47C	SNP	Missense_Mutation	23	37027094	A	G	3	51
BRCA	BR-MEX-095	BCOR	SNP	Missense_Mutation	23	39930324	C	A	28	60
BRCA	BR-MEX-095	ATG7	SNP	Silent	3	11468328	T	C	61	56
BRCA	BR-MEX-095	KLHL6	SNP	Missense_Mutation	3	183217608	G	A	37	96
BRCA	BR-MEX-095	TNK2	SNP	Missense_Mutation	3	195605937	C	T	23	98
BRCA	BR-MEX-095	KIAA0226	SNP	Nonsense_Mutation	3	197422804	G	C	45	100
BRCA	BR-MEX-095	COL7A1	SNP	Splice_site	3	48617101	C	A	22	88
BRCA	BR-MEX-095	MST1	SNP	Missense_Mutation	3	49723762	C	G	32	68
BRCA	BR-MEX-095	MAGI1	SNP	Missense_Mutation	3	65361620	C	A	26	99
BRCA	BR-MEX-095	PLK4	SNP	Splice_Site	4	128813519	G	A	33	97
BRCA	BR-MEX-095	ABLIM2	SNP	Splice_site	4	8009770	C	G	29	59
BRCA	BR-MEX-095	FYB	SNP	Missense_Mutation	5	39134377	G	A	43	51
BRCA	BR-MEX-095	LAMA4	SNP	Silent	6	112430775	C	G	29	56
BRCA	BR-MEX-095	COL12A1	SNP	Missense_Mutation	6	75847269	G	C	45	72
BRCA	BR-MEX-095	CLIP2	SNP	Silent	7	73771789	C	G	29	53
BRCA	BR-MEX-095	SEMA3C	SNP	Silent	7	80447714	G	T	41	48
BRCA	BR-MEX-095	PRKDC	SNP	Silent	8	48691173	G	C	41	34
BRCA	BR-MEX-095	PAG1	SNP	Silent	8	81905433	G	A	38	35
BRCA	BR-MEX-095	DAB2IP	SNP	Missense_Mutation	9	124521225	G	A	45	97
BRCA	BR-MEX-095	TMEM215	SNP	Silent	9	32784316	C	T	31	48
BRCA	BR-MEX-095	APTX	SNP	Missense_Mutation	9	32973566	T	G	51	82
BRCA	BR-MEX-095	SMC5	SNP	Missense_Mutation	9	72901163	T	G	51	60
BRCA	BR-MEX-095	PRUNE2	SNP	Missense_Mutation	9	79322661	G	T	44	54
BRCA	BR-MEX-098	ERO1LB	DEL	Splice_Site_Del	1	236380654	CTGTTGGTATGAATCACAGAAAGTCCT	-	20	53
BRCA	BR-MEX-098	KIF26B	SNP	Missense_Mutation	1	245847617	G	A	38	74
BRCA	BR-MEX-098	SLC44A3	SNP	Silent	1	95322913	C	T	27	37
BRCA	BR-MEX-098	KIAA1274	SNP	Missense_Mutation	10	72294580	G	T	37	59
BRCA	BR-MEX-098	GATA3	DEL	Frame_Shift_Del	10	8115942	T	-	56	88
BRCA	BR-MEX-098	OR51A2	SNP	Missense	11	4976744	A	G	8	52
BRCA	BR-MEX-098	LRP5	SNP	Missense	11	68154117	G	A	38	82
BRCA	BR-MEX-098	MYF5	SNP	Silent	12	81110944	G	A	38	37
BRCA	BR-MEX-098	NALCN	SNP	Missense_Mutation	13	101714331	G	A	38	85
BRCA	BR-MEX-098	GOLGA9P	SNP	Missense	15	23260865	G	C	41	57
BRCA	BR-MEX-098	HERC2	SNP	Missense	15	28447562	A	G	9	79
BRCA	BR-MEX-098	C15orf33	SNP	Splice_site	15	49659803	C	T	27	50
BRCA	BR-MEX-098	WFIKKN2	SNP	Missense_Mutation	17	48917004	C	A	25	100
BRCA	BR-MEX-098	UNC13D	SNP	Missense	17	73828973	G	A	43	48
BRCA	BR-MEX-098	WBP2	SNP	Nonsense_Mutation	17	73845688	C	A	22	98
BRCA	BR-MEX-098	FAM38B	SNP	Synonymous	18	10855509	C	A	17	51
BRCA	BR-MEX-098	DCC	SNP	Missense_Mutation	18	50683813	G	A	38	92
BRCA	BR-MEX-098	KIAA0802	SNP	Missense	18	8825613	C	A	17	97
BRCA	BR-MEX-098	NOTCH3	SNP	Silent	19	15276778	A	C	11	45
BRCA	BR-MEX-098	ZNF91	SNP	Nonsense	19	23542845	G	C	45	47
BRCA	BR-MEX-098	CREB3L3	SNP	Missense_Mutation	19	4171399	C	A	26	60
BRCA	BR-MEX-098	FPR2	SNP	Nonsense_Mutation	19	52272360	G	A	47	89
BRCA	BR-MEX-098	CCDC138	SNP	Missense_Mutation	2	109411076	G	C	48	51
BRCA	BR-MEX-098	PLEKHA3	SNP	Missense_Mutation	2	179365814	T	A	57	43
BRCA	BR-MEX-098	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	BR-MEX-098	TRPC4AP	SNP	Missense_Mutation	20	33603917	T	C	56	67
BRCA	BR-MEX-098	TOM1	SNP	Missense_Mutation	22	35719040	A	G	3	91
BRCA	BR-MEX-098	CXorf22	SNP	Missense_Mutation	23	35937995	G	A	40	35
BRCA	BR-MEX-098	TAF1	SNP	Missense_Mutation	23	70612428	G	T	46	97
BRCA	BR-MEX-098	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	BR-MEX-098	CCKAR	SNP	Missense_Mutation	4	26483685	C	T	23	40
BRCA	BR-MEX-098	TCP10	SNP	Missense	6	167786686	C	T	27	38
BRCA	BR-MEX-098	KIAA0319	SNP	Missense_Mutation	6	24559373	C	A	17	53
BRCA	BR-MEX-098	HIST1H2AJ	SNP	Missense_Mutation	6	27782506	C	T	21	82
BRCA	BR-MEX-098	RIPK1	SNP	Missense_Mutation	6	3113535	G	A	37	68
BRCA	BR-MEX-098	KLHL31	SNP	Missense_Mutation	6	53519484	C	T	23	89
BRCA	BR-MEX-098	LGSN	SNP	Missense_Mutation	6	63995573	A	T	12	55
BRCA	BR-MEX-098	FAM135A	DEL	Frame_Shift_Del	6	71187017	TA	-	53	92
BRCA	BR-MEX-098	ZAN	SNP	Missense	7	100349931	C	A	22	53
BRCA	BR-MEX-098	TMED4	SNP	Missense_Mutation	7	44621675	T	A	54	86
BRCA	BR-MEX-098	COL22A1	SNP	Missense_Mutation	8	139833618	C	T	31	99
BRCA	BR-MEX-098	CRB2	SNP	Silent	9	126125292	G	T	48	57
BRCA	BR-MEX-105	FCRL3	SNP	Silent	1	157667195	C	G	25	51
BRCA	BR-MEX-105	CACNA1E	SNP	Missense_Mutation	1	181480581	C	G	32	64
BRCA	BR-MEX-105	PRDM16	SNP	Silent	1	3328135	C	T	22	49
BRCA	BR-MEX-105	MKI67	SNP	Missense_Mutation	10	129900851	C	G	29	45
BRCA	BR-MEX-105	CYP2C8	SNP	Missense_Mutation	10	96802720	C	T	20	52
BRCA	BR-MEX-105	STRA6	SNP	Missense_Mutation	15	74486211	C	A	30	57
BRCA	BR-MEX-105	LPAR2	SNP	Missense_Mutation	19	19737915	T	G	60	85
BRCA	BR-MEX-105	ZNF569	SNP	Silent	19	37905041	T	C	51	63
BRCA	BR-MEX-105	KRTAP19-6	SNP	Silent	21	31914078	A	G	6	53
BRCA	BR-MEX-105	BCOR	SNP	Missense_Mutation	23	39933387	C	A	28	51
BRCA	BR-MEX-105	CHRD	SNP	Silent	3	184100495	C	T	29	52
BRCA	BR-MEX-105	MTMR14	SNP	Missense_Mutation	3	9730634	A	G	3	57
BRCA	BR-MEX-105	CPOX	SNP	Missense_Mutation	3	98300290	C	T	32	94
BRCA	BR-MEX-105	SH3TC1	SNP	Missense_Mutation	4	8230329	G	C	37	65
BRCA	BR-MEX-105	DNAH8	SNP	Missense_Mutation	6	38821012	T	G	52	21
BRCA	BR-MEX-105	HECW1	SNP	Missense_Mutation	7	43484702	C	T	27	52
BRCA	BR-MEX-105	ZNF34	SNP	Silent	8	145999704	G	C	45	44
BRCA	BR-MEX-105	PRDM14	SNP	Silent	8	70980474	C	G	29	55
BRCA	BR-MEX-106	FCGR1A	DEL	In_frame_Del	1	149763018	AAG	-	1	54
BRCA	BR-MEX-106	DAP3	SNP	Missense_Mutation	1	155699123	G	A	41	88
BRCA	BR-MEX-106	PAFAH2	SNP	Missense_Mutation	1	26308959	G	A	38	53
BRCA	BR-MEX-106	RBM20	SNP	Missense	10	112595674	G	A	42	53
BRCA	BR-MEX-106	GATA3	INS	Frame_Shift_Ins	10	8115715	-	GGGTC	55	90
BRCA	BR-MEX-106	RHOG	SNP	Silent	11	3848964	C	T	27	44
BRCA	BR-MEX-106	CSAD	SNP	Nonsense	12	53555069	C	T	26	92
BRCA	BR-MEX-106	SACS	INS	Frame_Shift_Ins	13	23949297	-	A	41	51
BRCA	BR-MEX-106	C14orf23	SNP	Nonsense	14	29242584	C	T	23	44
BRCA	BR-MEX-106	C14orf115	SNP	Missense_Mutation	14	74825336	G	A	42	50
BRCA	BR-MEX-106	DTWD1	SNP	Missense_Mutation	15	49935572	C	T	27	100
BRCA	BR-MEX-106	KIAA0182	INS	Frame_Shift_Ins	16	85699738	-	GAAGGCC	11	86
BRCA	BR-MEX-106	NCOR1	DEL	Frame_Shift_Del	17	15960904	G	-	47	97
BRCA	BR-MEX-106	GRN	DEL	In_frame_Del	17	42429429	CGTGTGTAG	-	19	36
BRCA	BR-MEX-106	VEZF1	SNP	Missense_Mutation	17	56051995	G	A	43	77
BRCA	BR-MEX-106	SCN4A	SNP	Silent	17	62022987	G	A	40	52
BRCA	BR-MEX-106	FADS6	DEL	Splice_site	17	72889693	TGGACTCTG	-	51	51
BRCA	BR-MEX-106	RPTOR	SNP	Missense_Mutation	17	78831639	C	T	31	96
BRCA	BR-MEX-106	RNF125	SNP	Missense_Mutation	18	29645881	G	A	40	51
BRCA	BR-MEX-106	LRRC30	SNP	Missense_Mutation	18	7231390	T	G	60	50
BRCA	BR-MEX-106	OBSL1	SNP	Missense_Mutation	2	220432999	C	G	29	100
BRCA	BR-MEX-106	RPIA	SNP	Silent	2	89034083	C	T	31	49
BRCA	BR-MEX-106	MORC4	SNP	Missense_Mutation	23	106185178	C	T	29	74
BRCA	BR-MEX-106	COL4A5	SNP	Missense_Mutation	23	107850033	G	A	41	96
BRCA	BR-MEX-106	CCDC120	INS	Frame_Shift_Ins	23	48925503	-	C	42	62
BRCA	BR-MEX-106	CAPN7	SNP	Silent	3	15292441	A	G	4	50
BRCA	BR-MEX-106	MUC4	SNP	Missense	3	195508204	G	A	45	55
BRCA	BR-MEX-106	TNK2	SNP	Missense_Mutation	3	195594900	G	A	37	62
BRCA	BR-MEX-106	DLG1	SNP	Missense_Mutation	3	196921444	T	A	50	86
BRCA	BR-MEX-106	GK3P	SNP	Missense	4	166199287	T	G	56	69
BRCA	BR-MEX-106	TXNDC15	SNP	Synonymous	5	134223561	C	T	28	47
BRCA	BR-MEX-106	TCOF1	SNP	Synonymous	5	149754266	C	T	22	54
BRCA	BR-MEX-106	DUSP22	SNP	Missense_Mutation	6	311936	C	T	21	79
BRCA	BR-MEX-106	DNAH8	SNP	Missense_Mutation	6	38883028	G	A	45	83
BRCA	BR-MEX-106	COL19A1	DEL	Frame_Shift_Del	6	70861304	TT	-	56	53
BRCA	BR-MEX-106	TMEM140	SNP	Missense	7	134849530	T	C	59	74
BRCA	BR-MEX-106	MGAM	SNP	Missense_Mutation	7	141722117	C	T	28	50
BRCA	BR-MEX-106	MAD1L1	SNP	Missense_Mutation	7	2020140	T	C	55	51
BRCA	BR-MEX-106	CSMD3	SNP	Missense_Mutation	8	113349050	C	T	21	100
BRCA	BR-MEX-106	TMEM203	SNP	Missense_Mutation	9	140099755	C	G	30	89
BRCA	BR-MEX-110	CD1A	SNP	Silent	1	158227245	G	A	39	43
BRCA	BR-MEX-110	AGRN	SNP	Missense_Mutation	1	957631	C	A	26	52
BRCA	BR-MEX-110	OAT	SNP	Missense_Mutation	10	126092450	C	T	32	96
BRCA	BR-MEX-110	MYO3A	SNP	Silent	10	26377209	T	C	61	53
BRCA	BR-MEX-110	PRKCQ	SNP	Silent	10	6472787	C	T	19	29
BRCA	BR-MEX-110	C11orf41	SNP	Nonsense_Mutation	11	33667450	C	A	19	52
BRCA	BR-MEX-110	OR5W2	SNP	Missense_Mutation	11	55681295	A	C	7	52
BRCA	BR-MEX-110	RBM4	SNP	Silent	11	66407245	C	G	32	48
BRCA	BR-MEX-110	MVK	SNP	Missense_Mutation	12	110013842	C	T	23	54
BRCA	BR-MEX-110	ATP12A	SNP	Silent	13	25272939	C	A	24	57
BRCA	BR-MEX-110	FRY	SNP	Silent	13	32836528	A	G	2	56
BRCA	BR-MEX-110	Unknown	SNP	Missense_Mutation	14	38311407	A	C	1	54
BRCA	BR-MEX-110	ABCD4	SNP	Silent	14	74759565	G	T	45	61
BRCA	BR-MEX-110	AEN	SNP	Silent	15	89172498	G	A	38	39
BRCA	BR-MEX-110	SCNN1B	SNP	Silent	16	23359974	C	T	23	26
BRCA	BR-MEX-110	COL1A1	SNP	Missense_Mutation	17	48263689	C	A	31	93
BRCA	BR-MEX-110	RBBP8	SNP	Silent	18	20573086	A	G	2	55
BRCA	BR-MEX-110	MPND	SNP	Missense_Mutation	19	4345760	G	A	37	88
BRCA	BR-MEX-110	NLRP11	SNP	Silent	19	56320869	T	C	57	26
BRCA	BR-MEX-110	IL18R1	SNP	Missense_Mutation	2	103003419	C	A	19	38
BRCA	BR-MEX-110	TOX2	SNP	Missense_Mutation	20	42694464	C	T	23	69
BRCA	BR-MEX-110	PNPLA3	SNP	Splice_site	22	44328758	C	T	27	85
BRCA	BR-MEX-110	DOCK11	SNP	Missense_Mutation	23	117739268	G	C	37	63
BRCA	BR-MEX-110	ZCCHC12	SNP	Missense_Mutation	23	117959515	C	T	27	65
BRCA	BR-MEX-110	MAP3K15	SNP	Missense_Mutation	23	19410543	G	A	39	82
BRCA	BR-MEX-110	MAGEB6	SNP	Missense_Mutation	23	26212102	G	A	38	41
BRCA	BR-MEX-110	LPAR4	SNP	Missense_Mutation	23	78010679	C	A	26	91
BRCA	BR-MEX-110	TBX22	SNP	Missense_Mutation	23	79281184	G	A	41	93
BRCA	BR-MEX-110	CBLB	SNP	Silent	3	105464775	G	A	46	78
BRCA	BR-MEX-110	CASR	SNP	Missense_Mutation	3	122002828	C	T	19	78
BRCA	BR-MEX-110	TMCC1	SNP	Missense_Mutation	3	129546960	C	T	27	35
BRCA	BR-MEX-110	PLSCR1	SNP	Missense_Mutation	3	146246595	G	T	43	54
BRCA	BR-MEX-110	TRAK1	SNP	Missense_Mutation	3	42226205	G	T	38	97
BRCA	BR-MEX-110	BEND4	SNP	Missense_Mutation	4	42145696	G	A	37	96
BRCA	BR-MEX-110	MAN2B2	SNP	Missense_Mutation	4	6611009	C	T	23	60
BRCA	BR-MEX-110	CCDC158	SNP	Missense_Mutation	4	77247057	G	A	45	74
BRCA	BR-MEX-110	SRFBP1	SNP	Missense_Mutation	5	121356038	C	T	32	56
BRCA	BR-MEX-110	UNC5A	SNP	Silent	5	176301539	C	T	31	51
BRCA	BR-MEX-110	GHR	SNP	Missense_Mutation	5	42565980	G	T	41	63
BRCA	BR-MEX-110	PAPD7	SNP	Silent	5	6749757	G	A	40	46
BRCA	BR-MEX-110	ACOT12	SNP	Missense_Mutation	5	80640804	C	T	31	43
BRCA	BR-MEX-110	AKD1	SNP	Nonsense_Mutation	6	109819063	G	A	37	51
BRCA	BR-MEX-110	HLA-DOB	SNP	Missense_Mutation	6	32782913	C	T	23	51
BRCA	BR-MEX-110	FLNC	SNP	Missense_Mutation	7	128484151	G	A	38	85
BRCA	BR-MEX-110	EPHA1	SNP	Silent	7	143093557	C	T	24	60
BRCA	BR-MEX-110	IQCE	SNP	Missense_Mutation	7	2638189	C	T	23	48
BRCA	BR-MEX-110	EGFR	SNP	Missense_Mutation	7	55224495	G	T	41	61
BRCA	BR-MEX-110	SLCO5A1	SNP	Silent	8	70591798	G	A	47	52
BRCA	BR-MEX-116	TOMM40L	DEL	Frame_Shift_Del	1	161197734	A	-	6	77
BRCA	BR-MEX-116	PIGR	SNP	Missense_Mutation	1	207110812	C	T	29	56
BRCA	BR-MEX-116	EPRS	SNP	Synonymous	1	220178634	C	T	32	68
BRCA	BR-MEX-116	DISP1	SNP	Splice_site	1	223164090	G	A	47	100
BRCA	BR-MEX-116	NVL	SNP	Missense_Mutation	1	224495862	G	A	45	87
BRCA	BR-MEX-116	ZP4	SNP	Silent	1	238046085	G	T	47	52
BRCA	BR-MEX-116	OR2T6	SNP	Silent	1	248551773	C	T	29	44
BRCA	BR-MEX-116	ARID1A	SNP	Nonsense_Mutation	1	27101195	C	T	29	98
BRCA	BR-MEX-116	KIF2C	SNP	Missense_Mutation	1	45220512	G	A	45	96
BRCA	BR-MEX-116	INADL	SNP	Missense	1	62367004	G	A	44	97
BRCA	BR-MEX-116	GBP1	SNP	Silent	1	89520886	G	A	33	70
BRCA	BR-MEX-116	BUB3	SNP	Silent	10	124914520	C	T	30	58
BRCA	BR-MEX-116	DOCK1	SNP	Missense_Mutation	10	129179603	A	G	6	69
BRCA	BR-MEX-116	ITGA8	SNP	Splice_Site	10	15639299	C	T	24	78
BRCA	BR-MEX-116	NEBL	SNP	Missense_Mutation	10	21309096	C	T	32	91
BRCA	BR-MEX-116	ZMYND11	SNP	Silent	10	285428	C	T	22	47
BRCA	BR-MEX-116	ZMIZ1	SNP	Missense_Mutation	10	81052045	G	C	34	96
BRCA	BR-MEX-116	MUC6	SNP	Missense_Mutation	11	1016190	G	T	42	59
BRCA	BR-MEX-116	KIAA1377	SNP	Missense	11	101793413	G	A	38	82
BRCA	BR-MEX-116	MLL	SNP	Missense_Mutation	11	118348856	G	T	48	100
BRCA	BR-MEX-116	H2AFX	SNP	Silent	11	118965724	C	T	31	44
BRCA	BR-MEX-116	FANCF	SNP	Missense_Mutation	11	22647304	G	A	45	82
BRCA	BR-MEX-116	CHRM4	SNP	Silent	11	46406881	G	A	45	75
BRCA	BR-MEX-116	OR4X1	SNP	Missense_Mutation	11	48285974	G	A	38	50
BRCA	BR-MEX-116	MYEOV	SNP	Missense_Mutation	11	69062864	A	T	12	41
BRCA	BR-MEX-116	CLPB	SNP	Silent	11	72145420	G	A	39	52
BRCA	BR-MEX-116	HEPHL1	SNP	Silent	11	93800771	C	T	32	54
BRCA	BR-MEX-116	YARS2	SNP	Silent	12	32908452	C	T	21	57
BRCA	BR-MEX-116	ADAMTS20	SNP	Missense_Mutation	12	43862484	C	T	17	96
BRCA	BR-MEX-116	ARID2	SNP	Missense_Mutation	12	46123876	C	T	29	61
BRCA	BR-MEX-116	MAP3K12	SNP	Silent	12	53877465	C	T	32	65
BRCA	BR-MEX-116	EDNRB	SNP	Synonymous	13	78493565	G	A	37	42
BRCA	BR-MEX-116	DYNC1H1	SNP	Missense_Mutation	14	102508021	A	G	8	80
BRCA	BR-MEX-116	POTEG	SNP	Missense_Mutation	14	19573107	C	T	32	57
BRCA	BR-MEX-116	CLEC14A	SNP	Missense_Mutation	14	38723949	C	T	31	56
BRCA	BR-MEX-116	SOS2	SNP	Missense_Mutation	14	50626509	G	C	48	99
BRCA	BR-MEX-116	KBTBD13	SNP	Missense	15	65369284	G	A	38	59
BRCA	BR-MEX-116	FES	SNP	Silent	15	91437224	C	T	29	67
BRCA	BR-MEX-116	MCTP2	SNP	Nonsense_Mutation	15	94913361	C	T	17	87
BRCA	BR-MEX-116	IGF1R	SNP	Missense_Mutation	15	99478058	G	A	40	63
BRCA	BR-MEX-116	NOXO1	SNP	Missense_Mutation	16	2029448	C	T	32	66
BRCA	BR-MEX-116	PKD1	SNP	Silent	16	2168840	C	T	29	55
BRCA	BR-MEX-116	CLDN6	SNP	Missense_Mutation	16	3065539	C	T	26	55
BRCA	BR-MEX-116	MT1E	SNP	Missense_Mutation	16	56660416	G	A	33	48
BRCA	BR-MEX-116	NUP93	SNP	Missense_Mutation	16	56782199	G	A	45	100
BRCA	BR-MEX-116	USP22	SNP	Silent	17	20907574	G	A	45	75
BRCA	BR-MEX-116	UNC45B	SNP	Missense_Mutation	17	33513565	A	T	1	92
BRCA	BR-MEX-116	MYO19	SNP	Missense_Mutation	17	34871826	G	A	40	95
BRCA	BR-MEX-116	FSCN2	SNP	Silent	17	79503256	G	A	33	73
BRCA	BR-MEX-116	HGS	SNP	Missense_Mutation	17	79668622	G	A	37	82
BRCA	BR-MEX-116	RIOK3	SNP	Missense_Mutation	18	21033426	C	T	31	76
BRCA	BR-MEX-116	TGIF1	SNP	Silent	18	3452116	C	T	32	50
BRCA	BR-MEX-116	LMAN1	SNP	Nonsense_Mutation	18	57021755	G	A	45	97
BRCA	BR-MEX-116	DOT1L	SNP	Silent	19	2222258	C	T	23	28
BRCA	BR-MEX-116	EML2	SNP	Splice_Site	19	46128077	C	G	32	91
BRCA	BR-MEX-116	NOVA2	SNP	Silent	19	46443253	C	T	25	53
BRCA	BR-MEX-116	HCN2	SNP	Silent	19	605114	C	T	29	49
BRCA	BR-MEX-116	OR2Z1	SNP	Missense_Mutation	19	8841526	C	G	32	50
BRCA	BR-MEX-116	PDK1	SNP	Missense_Mutation	2	173431632	C	T	32	86
BRCA	BR-MEX-116	CPS1	SNP	Silent	2	211502450	G	A	45	64
BRCA	BR-MEX-116	BOK	SNP	Missense_Mutation	2	242511794	G	A	38	70
BRCA	BR-MEX-116	OTOF	SNP	Silent	2	26705392	G	A	33	59
BRCA	BR-MEX-116	CCDC88A	SNP	Missense_Mutation	2	55555500	A	T	4	94
BRCA	BR-MEX-116	FBXO48	SNP	Missense_Mutation	2	68691979	G	A	41	89
BRCA	BR-MEX-116	HTRA2	SNP	Missense_Mutation	2	74757203	C	T	31	56
BRCA	BR-MEX-116	RNF160	SNP	Silent	21	30329699	C	T	31	48
BRCA	BR-MEX-116	DYRK1A	SNP	Missense_Mutation	21	38877857	C	T	32	87
BRCA	BR-MEX-116	PDE9A	SNP	Missense_Mutation	21	44171278	C	T	30	78
BRCA	BR-MEX-116	SUSD2	SNP	Missense_Mutation	22	24582104	C	G	26	92
BRCA	BR-MEX-116	UQCR10	SNP	Nonsense_Mutation	22	30163499	C	T	29	78
BRCA	BR-MEX-116	ATF4	SNP	Splice_site	22	39917453	G	A	45	80
BRCA	BR-MEX-116	ADSL	SNP	Missense_Mutation	22	40762488	G	A	45	58
BRCA	BR-MEX-116	MCHR1	SNP	Missense_Mutation	22	41075673	C	T	31	54
BRCA	BR-MEX-116	TRABD	SNP	Missense_Mutation	22	50636364	T	A	53	88
BRCA	BR-MEX-116	CHKB	SNP	Silent	22	51018794	G	A	41	53
BRCA	BR-MEX-116	CSTF2	SNP	Missense_Mutation	23	100081737	G	T	34	77
BRCA	BR-MEX-116	RAB40A	DEL	Frame_Shift_Del	23	102755078	A	-	7	72
BRCA	BR-MEX-116	MID1	SNP	Missense	23	10443132	G	A	38	42
BRCA	BR-MEX-116	DCX	SNP	Silent	23	110574253	C	T	24	53
BRCA	BR-MEX-116	SEPT6	SNP	Missense_Mutation	23	118786825	C	A	30	94
BRCA	BR-MEX-116	GPR119	SNP	Missense_Mutation	23	129519337	C	T	17	49
BRCA	BR-MEX-116	ERAS	SNP	Missense_Mutation	23	48687682	G	A	36	68
BRCA	BR-MEX-116	HUWE1	SNP	Silent	23	53602615	A	T	2	47
BRCA	BR-MEX-116	LOC100129550	SNP	Synonymous	3	122605699	C	T	30	47
BRCA	BR-MEX-116	NPHP3	SNP	Missense_Mutation	3	132440905	C	T	31	77
BRCA	BR-MEX-116	XPC	SNP	Synonymous	3	14201313	G	A	41	50
BRCA	BR-MEX-116	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-MEX-116	KBTBD5	SNP	Silent	3	42727290	G	A	38	59
BRCA	BR-MEX-116	ZNF589	SNP	Missense_Mutation	3	48309945	G	A	37	42
BRCA	BR-MEX-116	HEMK1	SNP	Missense_Mutation	3	50614573	G	A	39	75
BRCA	BR-MEX-116	ITIH4	SNP	Missense	3	52858317	C	T	29	66
BRCA	BR-MEX-116	ITIH4	SNP	Synonymous	3	52858321	G	A	45	56
BRCA	BR-MEX-116	CACNA2D3	SNP	Missense	3	55018683	G	A	45	84
BRCA	BR-MEX-116	LMOD3	SNP	Missense_Mutation	3	69168818	C	T	18	57
BRCA	BR-MEX-116	CBR4	SNP	Missense	4	169928890	T	A	53	64
BRCA	BR-MEX-116	WWC2	SNP	Missense_Mutation	4	184182526	G	A	45	88
BRCA	BR-MEX-116	DSPP	SNP	Missense	4	88534319	G	T	33	36
BRCA	BR-MEX-116	DSPP	SNP	Synonymous	4	88537198	C	T	17	42
BRCA	BR-MEX-116	DSPP	DEL	In_frame_Del	4	88537205	GACAGCAGT	-	37	56
BRCA	BR-MEX-116	PCDHB13	SNP	Missense	5	140593969	G	A	41	93
BRCA	BR-MEX-116	PCDHGA1	SNP	Missense_Mutation	5	140712404	G	A	38	66
BRCA	BR-MEX-116	PCDH12	SNP	Missense_Mutation	5	141336266	C	T	30	79
BRCA	BR-MEX-116	FAM105A	DEL	Frame_Shift_Del	5	14610388	GAGAACGA	-	37	91
BRCA	BR-MEX-116	NDST1	SNP	Missense	5	149918829	A	G	8	93
BRCA	BR-MEX-116	PLEKHG4B	SNP	Missense_Mutation	5	163461	G	A	37	54
BRCA	BR-MEX-116	GNB2L1	SNP	Synonymous	5	180670768	G	A	45	55
BRCA	BR-MEX-116	MAST4	SNP	Missense	5	66460214	C	T	32	52
BRCA	BR-MEX-116	ERAP2	SNP	Missense_Mutation	5	96215835	C	T	25	69
BRCA	BR-MEX-116	REV3L	SNP	Silent	6	111699001	G	A	36	52
BRCA	BR-MEX-116	ULBP2	SNP	Missense	6	150266511	C	T	27	45
BRCA	BR-MEX-116	ZBTB2	SNP	Silent	6	151687535	C	T	21	73
BRCA	BR-MEX-116	SYNE1	SNP	Missense_Mutation	6	152765694	T	C	52	58
BRCA	BR-MEX-116	ARID1B	SNP	Missense_Mutation	6	157150428	C	T	32	96
BRCA	BR-MEX-116	TDRD6	INS	Frame_Shift_Ins	6	46656460	-	G	27	66
BRCA	BR-MEX-116	DST	SNP	Silent	6	56505097	G	A	45	53
BRCA	BR-MEX-116	MDN1	SNP	Missense_Mutation	6	90403808	G	A	33	55
BRCA	BR-MEX-116	PCOLCE	SNP	Missense_Mutation	7	100201780	G	A	45	76
BRCA	BR-MEX-116	BRAF	SNP	Missense_Mutation	7	140476724	G	T	46	100
BRCA	BR-MEX-116	KEL	SNP	Missense_Mutation	7	142649615	A	T	7	72
BRCA	BR-MEX-116	SEPT14	SNP	Missense_Mutation	7	55910726	G	A	33	89
BRCA	BR-MEX-116	POR	SNP	Missense	7	75611613	G	A	39	74
BRCA	BR-MEX-116	PHTF2	SNP	Silent	7	77583145	C	A	29	56
BRCA	BR-MEX-116	HEPACAM2	SNP	Silent	7	92855730	G	A	37	59
BRCA	BR-MEX-116	DYNC1I1	SNP	Missense_Mutation	7	95726860	C	G	17	65
BRCA	BR-MEX-116	EXT1	SNP	Missense_Mutation	8	118834803	G	A	40	84
BRCA	BR-MEX-116	DEPDC6	SNP	Silent	8	120886110	C	T	25	74
BRCA	BR-MEX-116	KIAA0196	SNP	Missense_Mutation	8	126044607	C	T	18	59
BRCA	BR-MEX-116	XPO7	SNP	Silent	8	21842262	C	T	31	40
BRCA	BR-MEX-116	FAM160B2	SNP	Silent	8	21959793	C	T	23	47
BRCA	BR-MEX-116	GPR124	SNP	Silent	8	37698865	C	T	23	21
BRCA	BR-MEX-116	DECR1	SNP	Splice_site	8	91063906	T	A	58	67
BRCA	BR-MEX-116	MSRA	SNP	Silent	8	9912059	C	T	30	49
BRCA	BR-MEX-116	PPP2R4	SNP	Splice_Site	9	131885418	G	A	44	98
BRCA	BR-MEX-116	LOC442421	SNP	Missense	9	66499795	G	A	38	76
BRCA	BR-MEX-116	PTPRD	SNP	Missense_Mutation	9	8500913	C	T	29	67
BRCA	BR-MEX-120	SCAMP3	SNP	Splice_site	1	155228618	C	G	17	67
BRCA	BR-MEX-120	MNDA	SNP	Missense_Mutation	1	158815411	C	G	25	51
BRCA	BR-MEX-120	FAM5C	SNP	Missense_Mutation	1	190067657	G	A	38	57
BRCA	BR-MEX-120	GPR3	SNP	Missense_Mutation	1	27721146	A	G	14	93
BRCA	BR-MEX-120	ENKUR	SNP	Missense_Mutation	10	25273681	T	C	49	86
BRCA	BR-MEX-120	SLC22A10	SNP	Missense_Mutation	11	63078493	A	G	3	52
BRCA	BR-MEX-120	GALNT4	SNP	Missense_Mutation	12	89917566	G	C	35	99
BRCA	BR-MEX-120	PDXDC1	SNP	Missense_Mutation	16	15100361	A	G	4	66
BRCA	BR-MEX-120	VWA3A	SNP	Silent	16	22163937	A	G	3	51
BRCA	BR-MEX-120	RFWD3	SNP	Missense_Mutation	16	74662409	C	A	26	87
BRCA	BR-MEX-120	WBP2	SNP	Missense_Mutation	17	73845714	A	C	12	89
BRCA	BR-MEX-120	RNF213	SNP	Silent	17	78320994	T	G	62	48
BRCA	BR-MEX-120	SLC9A2	SNP	Silent	2	103318895	C	A	29	48
BRCA	BR-MEX-120	PRPF40A	SNP	Missense_Mutation	2	153551108	G	C	35	80
BRCA	BR-MEX-120	SP100	SNP	Missense_Mutation	2	231371027	A	G	3	33
BRCA	BR-MEX-120	SOX18	SNP	Missense_Mutation	20	62679671	G	A	39	53
BRCA	BR-MEX-120	HAO1	SNP	Splice_site	20	7864309	C	T	18	62
BRCA	BR-MEX-120	PAK7	SNP	Missense_Mutation	20	9525092	G	A	39	100
BRCA	BR-MEX-120	CLDN14	SNP	Missense_Mutation	21	37833678	G	A	38	62
BRCA	BR-MEX-120	C21orf57	SNP	Missense_Mutation	21	47707000	A	G	4	66
BRCA	BR-MEX-120	GPRASP2	SNP	Missense_Mutation	23	101971391	G	A	41	69
BRCA	BR-MEX-120	KALRN	SNP	Missense_Mutation	3	124356077	G	A	39	72
BRCA	BR-MEX-120	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	BR-MEX-120	MFI2	SNP	Missense_Mutation	3	196735828	C	T	31	49
BRCA	BR-MEX-120	SUMF1	SNP	Missense_Mutation	3	4403907	C	T	23	96
BRCA	BR-MEX-120	SEC24A	SNP	Missense_Mutation	5	134059332	C	A	18	81
BRCA	BR-MEX-120	GEMIN5	SNP	Missense_Mutation	5	154304074	C	A	30	97
BRCA	BR-MEX-120	MLLT4	SNP	Nonsense_Mutation	6	168315343	C	T	29	100
BRCA	BR-MEX-120	COL11A2	SNP	Silent	6	33152009	G	A	40	60
BRCA	BR-MEX-120	TECPR1	SNP	Silent	7	97870488	G	A	39	28
BRCA	BR-MEX-120	MYOM2	SNP	Silent	8	2048706	G	T	40	17
BRCA	BR-MEX-120	TEX15	SNP	Missense_Mutation	8	30705987	G	T	48	54
BRCA	BR-MEX-120	XKR5	SNP	Silent	8	6690412	G	A	39	33
BRCA	BR-MEX-120	C9orf171	SNP	Missense_Mutation	9	135447856	C	T	27	77
BRCA	BR-MEX-121	C1orf9	SNP	Nonsense_Mutation	1	172558915	C	T	25	82
BRCA	BR-MEX-121	NPHS2	SNP	Missense_Mutation	1	179526298	G	C	33	74
BRCA	BR-MEX-121	PRDM16	SNP	Missense_Mutation	1	3342257	G	A	39	95
BRCA	BR-MEX-121	MACF1	SNP	Silent	1	39757668	A	G	15	52
BRCA	BR-MEX-121	CNOT1	SNP	Silent	16	58587707	T	C	52	55
BRCA	BR-MEX-121	ZNF652	SNP	Silent	17	47376162	G	A	41	60
BRCA	BR-MEX-121	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-MEX-121	TRANK1	SNP	Silent	3	36873457	C	T	29	52
BRCA	BR-MEX-121	TTC21A	SNP	Missense_Mutation	3	39177900	A	T	2	49
BRCA	BR-MEX-121	HIST1H2BD	SNP	Silent	6	26158619	C	T	31	64
BRCA	BR-MEX-121	CYP7A1	SNP	Silent	8	59409618	A	C	14	48
BRCA	BR-MEX-121	RECK	SNP	Silent	9	36118828	G	C	39	33
BRCA	BR-MEX-122	COL11A1	SNP	Silent	1	103461563	C	T	23	50
BRCA	BR-MEX-122	RHOC	SNP	Silent	1	113245682	G	A	33	60
BRCA	BR-MEX-122	ASPM	SNP	Silent	1	197057419	C	T	21	53
BRCA	BR-MEX-122	TIE1	SNP	Splice_Site	1	43786939	G	C	34	92
BRCA	BR-MEX-122	PCDH15	SNP	Missense_Mutation	10	55587186	G	A	38	60
BRCA	BR-MEX-122	MMP1	SNP	Missense_Mutation	11	102662185	C	T	23	72
BRCA	BR-MEX-122	KCNC1	SNP	Missense_Mutation	11	17793249	C	T	30	98
BRCA	BR-MEX-122	OR5T2	SNP	Missense_Mutation	11	55999760	G	T	47	57
BRCA	BR-MEX-122	GANAB	SNP	Missense_Mutation	11	62397147	T	A	58	74
BRCA	BR-MEX-122	OR10A6	SNP	Nonsense_Mutation	11	7949333	G	A	38	45
BRCA	BR-MEX-122	ST5	SNP	Missense_Mutation	11	8752389	C	T	19	52
BRCA	BR-MEX-122	CCDC38	SNP	Missense_Mutation	12	96292382	C	T	31	68
BRCA	BR-MEX-122	ST8SIA2	SNP	Silent	15	93007600	C	T	27	38
BRCA	BR-MEX-122	BRD7	SNP	Missense_Mutation	16	50357574	G	A	39	72
BRCA	BR-MEX-122	CPNE7	SNP	Missense_Mutation	16	89650124	T	C	59	85
BRCA	BR-MEX-122	SLC43A2	SNP	Missense_Mutation	17	1494599	C	T	19	52
BRCA	BR-MEX-122	ACACA	SNP	Missense_Mutation	17	35608980	C	T	32	98
BRCA	BR-MEX-122	CDK12	SNP	Silent	17	37619032	C	T	26	64
BRCA	BR-MEX-122	NFIC	SNP	Silent	19	3381737	C	T	24	70
BRCA	BR-MEX-122	MSL3	SNP	Missense_Mutation	23	11783885	C	A	26	53
BRCA	BR-MEX-122	FMR1	SNP	Missense_Mutation	23	147011702	G	A	39	95
BRCA	BR-MEX-122	SRPK3	SNP	Missense_Mutation	23	153048261	G	C	34	57
BRCA	BR-MEX-122	G6PD	SNP	Nonsense_Mutation	23	153760443	C	A	29	75
BRCA	BR-MEX-122	COL6A6	SNP	Silent	3	130290233	A	G	3	62
BRCA	BR-MEX-122	GLRA3	SNP	Silent	4	175598343	G	T	35	52
BRCA	BR-MEX-122	UGT2B15	SNP	Missense_Mutation	4	69520830	G	T	43	82
BRCA	BR-MEX-122	KIAA1244	SNP	Nonsense_Mutation	6	138559748	C	T	19	72
BRCA	BR-MEX-122	DHX16	SNP	Missense_Mutation	6	30624280	T	C	51	86
BRCA	BR-MEX-122	RIMS1	DNP	Missense_Mutation	6	72970423	GC	AA	46	62
BRCA	BR-MEX-122	RELN	SNP	Missense_Mutation	7	103270613	C	T	19	100
BRCA	BR-MEX-122	NRF1	SNP	Missense_Mutation	7	129330250	G	C	40	99
BRCA	BR-MEX-122	TRIM4	SNP	Missense_Mutation	7	99489935	G	A	37	49
BRCA	BR-MEX-122	KIF13B	SNP	Missense_Mutation	8	28974424	G	A	40	81
BRCA	BR-MEX-122	GPR124	SNP	Missense_Mutation	8	37686816	G	A	37	69
BRCA	BR-MEX-122	ADAMTS13	SNP	Silent	9	136323123	C	T	29	65
BRCA	BR-MEX-122	FANCC	SNP	Splice_Site	9	97887367	C	T	18	80
BRCA	BR-MEX-122	PTCH1	SNP	Silent	9	98241360	G	A	40	52
BRCA	BR-MEX-123	FCRL6	SNP	Silent	1	159785391	G	A	45	52
BRCA	BR-MEX-123	VSIG8	SNP	Missense_Mutation	1	159826421	C	G	22	75
BRCA	BR-MEX-123	PRRX1	SNP	Missense_Mutation	1	170688968	C	T	27	49
BRCA	BR-MEX-123	CSF3R	SNP	Missense	1	36941238	G	A	43	58
BRCA	BR-MEX-123	ATE1	SNP	Missense_Mutation	10	123670541	C	T	24	83
BRCA	BR-MEX-123	APOA5	SNP	Missense_Mutation	11	116661185	G	A	38	55
BRCA	BR-MEX-123	ZFP91	SNP	Missense_Mutation	11	58384245	C	G	32	59
BRCA	BR-MEX-123	ZFP91	SNP	Silent	11	58384747	C	T	32	75
BRCA	BR-MEX-123	ZP1	SNP	Missense_Mutation	11	60637364	G	A	33	54
BRCA	BR-MEX-123	CD6	SNP	Silent	11	60777195	G	A	39	50
BRCA	BR-MEX-123	AP2A2	SNP	Missense_Mutation	11	994157	C	T	19	76
BRCA	BR-MEX-123	RASAL1	SNP	Missense_Mutation	12	113553455	C	G	29	94
BRCA	BR-MEX-123	HELB	SNP	Missense_Mutation	12	66725351	G	T	45	51
BRCA	BR-MEX-123	ZFC3H1	SNP	Missense_Mutation	12	72023392	G	A	45	95
BRCA	BR-MEX-123	DCN	SNP	Silent	12	91552260	A	T	13	62
BRCA	BR-MEX-123	OR4K2	SNP	Missense_Mutation	14	20345189	A	G	8	55
BRCA	BR-MEX-123	FOXA1	SNP	Silent	14	38060723	C	T	24	73
BRCA	BR-MEX-123	IFI27L1	SNP	Splice_Site	14	94568322	G	A	44	83
BRCA	BR-MEX-123	ITPKA	SNP	Missense_Mutation	15	41794669	G	A	45	57
BRCA	BR-MEX-123	MYH11	SNP	Splice_site	16	15841905	G	A	40	73
BRCA	BR-MEX-123	CES8	SNP	Splice_site	16	67022605	C	A	18	50
BRCA	BR-MEX-123	PCGF2	SNP	Missense_Mutation	17	36891775	C	T	31	76
BRCA	BR-MEX-123	PCGF2	SNP	Missense	17	36895025	C	T	31	61
BRCA	BR-MEX-123	PCGF2	SNP	Missense	17	36895049	C	T	29	69
BRCA	BR-MEX-123	TMEM100	SNP	Missense_Mutation	17	53798052	G	T	46	52
BRCA	BR-MEX-123	TP53	DEL	Frame_Shift_Del	17	7579463	G	-	35	54
BRCA	BR-MEX-123	SLC1A6	SNP	Silent	19	15072948	G	A	40	50
BRCA	BR-MEX-123	C19orf35	DEL	Frame_Shift_Del	19	2275732	C	-	26	51
BRCA	BR-MEX-123	DMKN	SNP	Missense_Mutation	19	36002411	T	C	55	43
BRCA	BR-MEX-123	MYT1L	SNP	Silent	2	1926908	G	T	37	50
BRCA	BR-MEX-123	COL6A3	SNP	Silent	2	238285731	G	A	40	44
BRCA	BR-MEX-123	TMEM111	SNP	Missense_Mutation	3	10011417	T	G	64	88
BRCA	BR-MEX-123	C3orf37	SNP	Missense_Mutation	3	129007734	G	A	38	91
BRCA	BR-MEX-123	MUC4	SNP	Missense	3	195506023	G	A	40	53
BRCA	BR-MEX-123	TRIM61	SNP	Missense_Mutation	4	165891141	G	A	40	54
BRCA	BR-MEX-123	PDLIM5	SNP	Nonsense_Mutation	4	95575768	C	T	31	71
BRCA	BR-MEX-123	NMUR2	SNP	Missense_Mutation	5	151772005	C	T	27	45
BRCA	BR-MEX-123	BTNL8	SNP	Silent	5	180335815	G	A	39	33
BRCA	BR-MEX-123	RXFP3	SNP	Silent	5	33937016	G	A	39	13
BRCA	BR-MEX-123	FOXF2	SNP	Missense_Mutation	6	1390807	C	G	23	71
BRCA	BR-MEX-123	DLL1	SNP	Silent	6	170597400	G	A	37	46
BRCA	BR-MEX-123	NCR3	SNP	Missense_Mutation	6	31557655	C	T	19	50
BRCA	BR-MEX-123	DOCK4	SNP	Missense_Mutation	7	111368418	G	A	38	60
BRCA	BR-MEX-123	WDR91	SNP	Silent	7	134873197	G	A	38	49
BRCA	BR-MEX-123	XRCC2	SNP	Silent	7	152346120	G	A	42	58
BRCA	BR-MEX-123	VSTM2A	SNP	Missense	7	54636856	C	T	27	80
BRCA	BR-MEX-123	CYTH3	SNP	Missense_Mutation	7	6204955	C	T	23	86
BRCA	BR-MEX-123	TEX15	SNP	Silent	8	30701749	C	T	19	40
BRCA	BR-MEX-123	STMN2	SNP	Silent	8	80549089	C	T	28	68
BRCA	BR-MEX-123	S1PR3	SNP	Missense_Mutation	9	91617031	C	T	27	63
BRCA	BR-MEX-126	DYRK3	SNP	Missense_Mutation	1	206821706	C	A	17	66
BRCA	BR-MEX-126	C1orf57	SNP	Missense_Mutation	1	233113957	G	A	40	57
BRCA	BR-MEX-126	RGS7	SNP	Splice_Site	1	240975345	T	C	53	91
BRCA	BR-MEX-126	KIAA1522	SNP	Missense_Mutation	1	33235304	C	T	22	81
BRCA	BR-MEX-126	ZNF25	SNP	Missense_Mutation	10	38241387	A	C	8	73
BRCA	BR-MEX-126	PDE6C	SNP	Missense_Mutation	10	95381783	A	G	2	76
BRCA	BR-MEX-126	MLL	SNP	Nonsense_Mutation	11	118350902	C	T	29	98
BRCA	BR-MEX-126	EHBP1L1	SNP	Missense_Mutation	11	65357436	C	A	22	52
BRCA	BR-MEX-126	ADPRHL1	SNP	Missense_Mutation	13	114088161	G	T	44	93
BRCA	BR-MEX-126	MYCBP2	SNP	Missense_Mutation	13	77748602	C	T	27	100
BRCA	BR-MEX-126	UBE3A	SNP	Missense_Mutation	15	25616242	T	A	52	93
BRCA	BR-MEX-126	CDH1	SNP	Nonsense_Mutation	16	68863602	G	T	45	98
BRCA	BR-MEX-126	HELZ	SNP	Missense_Mutation	17	65147277	G	C	33	58
BRCA	BR-MEX-126	ZNF461	SNP	Missense_Mutation	19	37129568	C	T	20	51
BRCA	BR-MEX-126	FAM123C	SNP	Silent	2	131521625	A	T	7	40
BRCA	BR-MEX-126	GDF7	SNP	Missense_Mutation	2	20870236	C	G	26	68
BRCA	BR-MEX-126	AFTPH	SNP	Missense_Mutation	2	64778806	G	A	46	64
BRCA	BR-MEX-126	ALMS1	SNP	Silent	2	73680944	T	C	57	53
BRCA	BR-MEX-126	NPHP3	SNP	Missense_Mutation	3	132440868	G	T	41	77
BRCA	BR-MEX-126	RTP1	SNP	Missense_Mutation	3	186917354	G	C	44	66
BRCA	BR-MEX-126	APC	SNP	Silent	5	112174945	G	A	40	45
BRCA	BR-MEX-126	PCDHB4	SNP	Missense_Mutation	5	140502019	C	A	26	61
BRCA	BR-MEX-126	COL14A1	SNP	Missense_Mutation	8	121344387	C	T	23	78
BRCA	BR-MEX-129	C11orf63	SNP	Splice_site	11	122828072	C	T	19	49
BRCA	BR-MEX-129	PLA2G16	SNP	Silent	11	63357707	G	A	36	61
BRCA	BR-MEX-129	CD163L1	SNP	Missense_Mutation	12	7527949	C	T	30	51
BRCA	BR-MEX-129	KIAA1409	SNP	Missense_Mutation	14	94079386	G	A	38	97
BRCA	BR-MEX-129	AKAP13	SNP	Missense_Mutation	15	86278346	G	T	41	97
BRCA	BR-MEX-129	LAMA3	SNP	Missense_Mutation	18	21437843	G	A	37	50
BRCA	BR-MEX-129	WIZ	SNP	Missense_Mutation	19	15538064	G	C	42	50
BRCA	BR-MEX-129	RBM10	SNP	Missense_Mutation	23	47030503	C	T	23	70
BRCA	BR-MEX-129	MRPL3	SNP	Missense_Mutation	3	131181654	A	C	9	53
BRCA	BR-MEX-129	SI	SNP	Nonsense_Mutation	3	164700122	C	T	21	62
BRCA	BR-MEX-129	CANX	SNP	Silent	5	179147471	T	C	55	52
BRCA	BR-MEX-129	KCND2	SNP	Silent	7	120385851	C	T	19	72
BRCA	BR-MEX-129	HERPUD2	SNP	Missense_Mutation	7	35674848	T	G	50	49
BRCA	BR-MEX-138	ASPM	SNP	Missense_Mutation	1	197073502	C	T	28	56
BRCA	BR-MEX-138	TECTB	SNP	Missense_Mutation	10	114057879	G	A	42	78
BRCA	BR-MEX-138	HS6ST3	SNP	Missense_Mutation	13	97485053	G	T	33	66
BRCA	BR-MEX-138	SERPINA1	SNP	Silent	14	94848993	C	A	21	55
BRCA	BR-MEX-138	SHC4	SNP	Missense_Mutation	15	49118284	G	T	35	83
BRCA	BR-MEX-138	BCMO1	SNP	Silent	16	81324008	C	A	29	43
BRCA	BR-MEX-138	BAZ2B	SNP	Missense_Mutation	2	160241775	G	T	34	71
BRCA	BR-MEX-138	ZFP37	SNP	Silent	9	115805266	C	T	19	48
BRCA	BR-MEX-138	OR1N1	SNP	Missense_Mutation	9	125288846	G	A	35	79
BRCA	BR-MEX-150	RYR2	SNP	Missense_Mutation	1	237813297	A	G	8	80
BRCA	BR-MEX-150	GRK5	SNP	Silent	10	121189890	A	G	2	63
BRCA	BR-MEX-150	ADAMTS14	SNP	Silent	10	72434631	G	T	47	52
BRCA	BR-MEX-150	RCOR2	SNP	Missense_Mutation	11	63681922	C	T	23	95
BRCA	BR-MEX-150	FGF4	SNP	Silent	11	69588116	C	T	27	24
BRCA	BR-MEX-150	OASL	SNP	Missense_Mutation	12	121458471	C	T	24	63
BRCA	BR-MEX-150	ADAM21	SNP	Missense_Mutation	14	70924913	G	C	33	62
BRCA	BR-MEX-150	VAC14	SNP	Silent	16	70732609	G	C	45	56
BRCA	BR-MEX-150	DNAH2	SNP	Missense_Mutation	17	7701562	G	A	38	68
BRCA	BR-MEX-150	EPS15L1	SNP	Silent	19	16514640	C	T	24	56
BRCA	BR-MEX-150	ZNF257	SNP	Silent	19	22271803	C	A	22	52
BRCA	BR-MEX-150	LMNB2	SNP	Silent	19	2434313	G	C	41	42
BRCA	BR-MEX-150	PTPRH	SNP	Missense_Mutation	19	55715261	C	T	32	47
BRCA	BR-MEX-150	SDC1	SNP	Missense_Mutation	2	20402926	G	A	39	52
BRCA	BR-MEX-150	BRD1	SNP	Silent	22	50217612	C	T	23	7
BRCA	BR-MEX-150	PIK3CA	SNP	Missense_Mutation	3	178936092	A	G	11	90
BRCA	BR-MEX-150	KIAA0947	SNP	Missense_Mutation	5	5464545	C	T	30	71
BRCA	BR-MEX-150	SLC17A5	SNP	Missense_Mutation	6	74331559	T	A	49	89
BRCA	BR-MEX-150	RFC2	SNP	Missense_Mutation	7	73668640	C	T	28	63
BRCA	BR-MEX-150	OR13C3	SNP	Missense_Mutation	9	107299058	C	T	26	50
BRCA	BR-MEX-150	GNE	SNP	Missense_Mutation	9	36219948	C	T	26	94
BRCA	BR-MEX-154	SMG5	SNP	Missense_Mutation	1	156231141	C	T	18	61
BRCA	BR-MEX-154	CACNA1S	SNP	Synonymous	1	201009810	C	A	29	51
BRCA	BR-MEX-154	TFAP2E	SNP	Missense_Mutation	1	36040559	G	A	37	92
BRCA	BR-MEX-154	TMEM59	SNP	Missense_Mutation	1	54512992	C	A	20	70
BRCA	BR-MEX-154	TAS1R1	SNP	Missense_Mutation	1	6635387	G	A	47	82
BRCA	BR-MEX-154	CLSTN1	SNP	Missense_Mutation	1	9796019	T	A	56	79
BRCA	BR-MEX-154	DDX21	SNP	Missense_Mutation	10	70731692	A	G	4	62
BRCA	BR-MEX-154	IFIT2	SNP	Nonsense_Mutation	10	91066145	G	A	41	73
BRCA	BR-MEX-154	KCNJ5	SNP	Silent	11	128781960	C	T	27	48
BRCA	BR-MEX-154	KCNA4	SNP	Silent	11	30033107	G	A	37	47
BRCA	BR-MEX-154	TMTC2	SNP	Silent	12	83290112	G	T	39	0
BRCA	BR-MEX-154	DDX12	INS	Frame_Shift_Ins	12	9571496	-	A	25	63
BRCA	BR-MEX-154	THSD1	SNP	Missense_Mutation	13	52952500	C	A	28	72
BRCA	BR-MEX-154	NID2	SNP	Missense_Mutation	14	52496390	G	A	39	55
BRCA	BR-MEX-154	AK7	SNP	Missense_Mutation	14	96875258	C	T	27	60
BRCA	BR-MEX-154	CWC25	SNP	Missense	17	36977308	G	T	46	97
BRCA	BR-MEX-154	HDAC5	SNP	Missense	17	42156519	C	A	20	98
BRCA	BR-MEX-154	SFRS1	SNP	Missense_Mutation	17	56083775	C	A	30	99
BRCA	BR-MEX-154	AZI1	SNP	Silent	17	79180632	G	T	39	58
BRCA	BR-MEX-154	ZNF397	SNP	Missense_Mutation	18	32822612	G	A	41	77
BRCA	BR-MEX-154	POLR2E	SNP	Missense_Mutation	19	1093969	T	C	59	81
BRCA	BR-MEX-154	LILRB5	SNP	Missense	19	54754932	C	T	22	44
BRCA	BR-MEX-154	NPAS2	SNP	Silent	2	101591345	G	A	38	30
BRCA	BR-MEX-154	GREB1	DEL	Frame_Shift_Del	2	11735439	GT	-	36	80
BRCA	BR-MEX-154	GTF3C2	SNP	Silent	2	27560170	T	C	51	40
BRCA	BR-MEX-154	POTED	SNP	Synonymous	21	15011839	T	C	51	32
BRCA	BR-MEX-154	RWDD2B	SNP	Missense_Mutation	21	30391555	C	A	28	50
BRCA	BR-MEX-154	C21orf121	SNP	Synonymous	21	43442339	C	T	19	47
BRCA	BR-MEX-154	HSF2BP	SNP	Missense_Mutation	21	44949822	G	A	35	89
BRCA	BR-MEX-154	LAMP2	SNP	Splice_Site_SNP	23	119581881	C	G	32	86
BRCA	BR-MEX-154	GABRE	SNP	Missense_Mutation	23	151129827	C	T	29	66
BRCA	BR-MEX-154	PJA1	SNP	Missense_Mutation	23	68382265	T	A	52	41
BRCA	BR-MEX-154	NUP153	SNP	Missense_Mutation	6	17629522	C	T	31	82
BRCA	BR-MEX-154	RAB11FIP1	SNP	Silent	8	37730178	T	C	56	54
BRCA	BR-MEX-155	FDPS	SNP	Missense_Mutation	1	155279675	G	C	39	53
BRCA	BR-MEX-155	GREM2	SNP	Silent	1	240656455	C	T	27	46
BRCA	BR-MEX-155	MFSD2A	SNP	Missense_Mutation	1	40432306	G	A	48	69
BRCA	BR-MEX-155	KIAA0913	SNP	Missense_Mutation	10	75551134	G	T	36	96
BRCA	BR-MEX-155	IGF1	SNP	Missense_Mutation	12	102874128	A	G	13	75
BRCA	BR-MEX-155	INF2	SNP	Splice_site	14	105246551	C	T	30	95
BRCA	BR-MEX-155	CRTC3	SNP	Missense_Mutation	15	91150692	T	C	55	74
BRCA	BR-MEX-155	C16orf89	SNP	Silent	16	5115949	C	T	24	45
BRCA	BR-MEX-155	RLTPR	SNP	Splice_site	16	67685218	C	T	27	43
BRCA	BR-MEX-155	STAC2	SNP	Missense_Mutation	17	37370529	G	T	36	94
BRCA	BR-MEX-155	SNED1	SNP	Missense_Mutation	2	241973195	C	G	30	97
BRCA	BR-MEX-155	ALLC	SNP	Silent	2	3727463	C	T	19	34
BRCA	BR-MEX-155	CYTSA	SNP	Missense_Mutation	22	24718104	G	A	39	98
BRCA	BR-MEX-155	HTATSF1	SNP	Silent	23	135581894	C	T	21	49
BRCA	BR-MEX-155	PLXNB1	SNP	Missense_Mutation	3	48457519	G	C	33	66
BRCA	BR-MEX-155	NPFFR2	SNP	Missense_Mutation	4	72897710	G	A	38	49
BRCA	BR-MEX-155	FSTL4	SNP	Missense_Mutation	5	132648430	C	A	21	69
BRCA	BR-MEX-155	NKX2-5	SNP	Silent	5	172659764	G	C	38	58
BRCA	BR-MEX-155	DST	SNP	Missense_Mutation	6	56490021	A	C	4	50
BRCA	BR-MEX-155	WNT2	SNP	Nonsense_Mutation	7	116960638	C	T	26	75
BRCA	BR-MEX-155	SEPT7	SNP	Silent	7	35942763	C	T	31	59
BRCA	BR-MEX-155	NPC1L1	SNP	Missense_Mutation	7	44579613	G	A	40	66
BRCA	BR-MEX-155	C8orf46	SNP	Silent	8	67425831	G	A	37	26
BRCA	BR-MEX-158	VPS13D	SNP	Silent	1	12463981	C	A	29	78
BRCA	BR-MEX-158	GORAB	SNP	Silent	1	170508613	G	A	35	49
BRCA	BR-MEX-158	ASTN1	SNP	Missense_Mutation	1	177001910	G	A	40	85
BRCA	BR-MEX-158	NLRP3	SNP	Missense_Mutation	1	247599327	A	G	11	55
BRCA	BR-MEX-158	PARG	SNP	Splice_site	10	51589224	G	A	33	78
BRCA	BR-MEX-158	PPFIA2	SNP	Missense_Mutation	12	81688712	T	C	52	92
BRCA	BR-MEX-158	GAS6	SNP	Missense_Mutation	13	114525060	C	T	29	58
BRCA	BR-MEX-158	FANCI	SNP	Missense_Mutation	15	89811698	T	A	52	76
BRCA	BR-MEX-158	PALB2	SNP	Silent	16	23646201	A	G	4	52
BRCA	BR-MEX-158	SPNS1	SNP	Nonsense_Mutation	16	28995566	G	A	47	70
BRCA	BR-MEX-158	ABCC12	SNP	Missense_Mutation	16	48162405	A	T	12	46
BRCA	BR-MEX-158	NARFL	SNP	Splice_site	16	780845	G	A	45	80
BRCA	BR-MEX-158	SLC39A6	SNP	Silent	18	33706965	C	T	31	43
BRCA	BR-MEX-158	INSR	SNP	Silent	19	7152895	A	G	7	29
BRCA	BR-MEX-158	CCDC141	SNP	Missense_Mutation	2	179732821	G	A	39	80
BRCA	BR-MEX-158	C2orf57	SNP	Missense_Mutation	2	232458690	C	T	30	54
BRCA	BR-MEX-158	C21orf29	SNP	Missense_Mutation	21	45941869	G	A	37	77
BRCA	BR-MEX-158	GPR112	SNP	Missense_Mutation	23	135432400	C	A	32	54
BRCA	BR-MEX-158	HLTF	SNP	Missense_Mutation	3	148791073	C	T	30	58
BRCA	BR-MEX-158	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-MEX-158	NICN1	SNP	Silent	3	49462445	C	T	32	77
BRCA	BR-MEX-158	BMPER	SNP	Silent	7	34118638	G	A	40	46
BRCA	BR-MEX-158	ZNF713	SNP	Missense_Mutation	7	56007305	C	T	24	88
BRCA	BR-MEX-158	SLC27A4	SNP	Silent	9	131107452	G	A	45	59
BRCA	BR-MEX-165	FAM132A	SNP	Missense_Mutation	1	1179371	T	G	58	76
BRCA	BR-MEX-165	C1orf56	SNP	Missense_Mutation	1	151020381	G	C	42	75
BRCA	BR-MEX-165	OLFML2B	SNP	Missense_Mutation	1	161953757	G	A	38	49
BRCA	BR-MEX-165	DDR2	SNP	Missense_Mutation	1	162748500	T	C	62	90
BRCA	BR-MEX-165	DTL	SNP	Missense_Mutation	1	212220690	G	C	45	94
BRCA	BR-MEX-165	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	BR-MEX-165	FAM22A	DEL	In_frame_Del	10	88994266	CTC	-	32	49
BRCA	BR-MEX-165	KRT74	SNP	Silent	12	52960783	G	T	47	62
BRCA	BR-MEX-165	DGKA	SNP	Missense_Mutation	12	56333277	A	C	3	57
BRCA	BR-MEX-165	AP1G2	SNP	Missense_Mutation	14	24033791	G	A	39	57
BRCA	BR-MEX-165	AP2B1	SNP	Missense_Mutation	17	33977780	C	T	31	74
BRCA	BR-MEX-165	DNAI2	SNP	Missense_Mutation	17	72285813	C	A	30	72
BRCA	BR-MEX-165	POTEC	SNP	Missense	18	14537868	G	A	47	49
BRCA	BR-MEX-165	POTEC	SNP	Missense	18	14537871	C	T	17	51
BRCA	BR-MEX-165	ZNF536	SNP	Silent	19	31039601	G	T	47	51
BRCA	BR-MEX-165	ZNF527	SNP	Missense_Mutation	19	37879697	A	T	8	53
BRCA	BR-MEX-165	RGPD5	SNP	Missense	2	113147370	G	A	48	84
BRCA	BR-MEX-165	ZC3H15	DNP	Missense_Mutation	2	187371446	GA	TT	45	72
BRCA	BR-MEX-165	PTPRT	SNP	Silent	20	40944528	G	A	37	22
BRCA	BR-MEX-165	IQSEC2	SNP	Missense_Mutation	23	53279696	C	T	24	65
BRCA	BR-MEX-165	MED12	SNP	Missense_Mutation	23	70349258	C	T	32	81
BRCA	BR-MEX-165	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	BR-MEX-165	FOXP1	SNP	Nonsense_Mutation	3	71102834	G	A	46	100
BRCA	BR-MEX-165	MFAP3L	SNP	Silent	4	170912847	G	A	40	44
BRCA	BR-MEX-165	GABRB1	SNP	Silent	4	47405408	C	T	31	47
BRCA	BR-MEX-165	DST	SNP	Missense	6	56328712	T	C	49	50
BRCA	BR-MEX-165	USP17L2	SNP	Missense	8	11996203	A	G	9	46
BRCA	BR-MEX-166	RABGAP1L	SNP	Missense_Mutation	1	174652711	C	T	32	79
BRCA	BR-MEX-166	OBSCN	SNP	Splice_site	1	228520902	G	T	39	81
BRCA	BR-MEX-166	SSX2IP	SNP	Missense_Mutation	1	85136465	G	A	48	50
BRCA	BR-MEX-166	CLCA4	SNP	Missense_Mutation	1	87036823	G	A	41	77
BRCA	BR-MEX-166	CLCA4	SNP	Silent	1	87041239	G	A	33	25
BRCA	BR-MEX-166	WDR37	SNP	Missense_Mutation	10	1151123	C	G	18	100
BRCA	BR-MEX-166	MKX	SNP	Silent	10	28023503	G	C	47	50
BRCA	BR-MEX-166	ATM	SNP	Splice_site	11	108151895	G	A	35	97
BRCA	BR-MEX-166	ACAD8	SNP	Missense_Mutation	11	134128925	C	A	32	76
BRCA	BR-MEX-166	SPTY2D1	SNP	Missense_Mutation	11	18637111	C	A	20	58
BRCA	BR-MEX-166	LGR4	SNP	Missense_Mutation	11	27389656	A	T	8	91
BRCA	BR-MEX-166	SSRP1	SNP	Missense_Mutation	11	57095220	T	C	54	89
BRCA	BR-MEX-166	BATF2	SNP	De_novo_Start_OutOfFrame	11	64757213	C	T	19	29
BRCA	BR-MEX-166	CUX2	SNP	Missense_Mutation	12	111758433	C	T	27	66
BRCA	BR-MEX-166	CCDC62	SNP	Missense_Mutation	12	123286248	A	G	11	62
BRCA	BR-MEX-166	BCL11B	SNP	Silent	14	99640782	C	T	19	55
BRCA	BR-MEX-166	CDH1	SNP	Silent	16	68857327	A	G	5	54
BRCA	BR-MEX-166	KLHL36	SNP	Missense_Mutation	16	84691115	C	G	17	85
BRCA	BR-MEX-166	ZNRF4	SNP	Missense_Mutation	19	5456262	G	A	40	35
BRCA	BR-MEX-166	GP6	SNP	Silent	19	55526364	G	T	41	51
BRCA	BR-MEX-166	TTN	SNP	Missense_Mutation	2	179483526	G	T	35	85
BRCA	BR-MEX-166	KRTCAP3	SNP	Missense_Mutation	2	27666852	A	C	13	67
BRCA	BR-MEX-166	C2orf71	SNP	Missense_Mutation	2	29293976	G	A	39	55
BRCA	BR-MEX-166	PNPLA3	SNP	Missense_Mutation	22	44328788	G	A	40	41
BRCA	BR-MEX-166	TRIM42	SNP	Missense_Mutation	3	140407294	C	A	30	56
BRCA	BR-MEX-166	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	BR-MEX-166	NDST3	SNP	Missense_Mutation	4	118975805	C	A	30	60
BRCA	BR-MEX-166	HAND1	SNP	Silent	5	153857224	C	T	23	21
BRCA	BR-MEX-166	SLU7	SNP	Missense_Mutation	5	159834993	C	A	30	100
BRCA	BR-MEX-166	NSD1	SNP	Missense_Mutation	5	176675204	C	T	19	56
BRCA	BR-MEX-166	MAK	SNP	Missense_Mutation	6	10791983	T	C	50	68
BRCA	BR-MEX-166	TAAR6	SNP	Missense_Mutation	6	132891552	C	T	30	55
BRCA	BR-MEX-166	TAAR1	SNP	Silent	6	132966483	C	T	24	48
BRCA	BR-MEX-166	HIST1H2AC	SNP	Missense_Mutation	6	26124488	A	G	5	92
BRCA	BR-MEX-166	LTA	SNP	Missense_Mutation	6	31540751	G	A	40	51
BRCA	BR-MEX-166	ZNF498	SNP	Missense_Mutation	7	99227620	C	A	23	61
BRCA	BR-MEX-166	TMEM215	SNP	Missense_Mutation	9	32784761	G	T	41	81
BRCA	BR-MEX-167	RXFP4	SNP	Silent	1	155912127	G	A	47	52
BRCA	BR-MEX-167	FAM13C	SNP	Silent	10	61022287	C	T	23	49
BRCA	BR-MEX-167	CTTN	SNP	Silent	11	70275236	G	A	39	39
BRCA	BR-MEX-167	FAT3	SNP	Missense_Mutation	11	92538372	G	C	44	74
BRCA	BR-MEX-167	SGCG	SNP	Silent	13	23894797	T	C	58	47
BRCA	BR-MEX-167	INF2	SNP	Splice_site	14	105246551	C	T	30	95
BRCA	BR-MEX-167	CBFB	SNP	Nonsense_Mutation	16	67070623	C	T	23	77
BRCA	BR-MEX-167	GRIN2A	SNP	Missense_Mutation	16	9858017	G	T	41	53
BRCA	BR-MEX-167	WDR7	SNP	Silent	18	54448796	G	A	39	27
BRCA	BR-MEX-167	MYO18B	SNP	Silent	22	26165341	C	T	19	48
BRCA	BR-MEX-167	FGD1	SNP	Missense_Mutation	23	54472657	G	A	40	64
BRCA	BR-MEX-169	SPAG17	SNP	Missense_Mutation	1	118506553	T	C	60	60
BRCA	BR-MEX-169	FLG2	SNP	Missense_Mutation	1	152324505	G	T	44	20
BRCA	BR-MEX-169	UBR4	SNP	Missense_Mutation	1	19490823	C	A	26	83
BRCA	BR-MEX-169	VPS33A	SNP	Missense_Mutation	12	122750886	G	A	38	75
BRCA	BR-MEX-169	PRSS22	SNP	Missense_Mutation	16	2904005	T	A	55	53
BRCA	BR-MEX-169	ROGDI	SNP	Missense_Mutation	16	4849731	G	A	39	72
BRCA	BR-MEX-169	BPTF	SNP	Silent	17	65871042	T	C	55	53
BRCA	BR-MEX-169	GSK3B	SNP	Missense_Mutation	3	119631607	C	T	23	97
BRCA	BR-MEX-169	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	BR-MEX-169	KDM1B	SNP	Missense_Mutation	6	18217974	A	T	12	77
BRCA	BR-MEX-169	LPAR1	SNP	Missense_Mutation	9	113637943	G	A	41	63
BRCA	BR-MEX-172	ATAD3B	SNP	Missense_Mutation	1	1417638	G	T	38	74
BRCA	BR-MEX-172	CHUK	SNP	Nonsense_Mutation	10	101978536	C	A	29	95
BRCA	BR-MEX-172	TMEM132D	SNP	Missense_Mutation	12	130185156	G	A	38	100
BRCA	BR-MEX-172	PZP	SNP	Missense_Mutation	12	9345141	C	T	21	32
BRCA	BR-MEX-172	OR4N2	SNP	Missense_Mutation	14	20296460	G	C	48	53
BRCA	BR-MEX-172	SERPINA12	SNP	Missense_Mutation	14	94953738	C	T	19	37
BRCA	BR-MEX-172	ALDH1A3	SNP	Silent	15	101427830	G	A	38	17
BRCA	BR-MEX-172	RYR3	SNP	Silent	15	33941284	C	T	19	44
BRCA	BR-MEX-172	KIAA1024	SNP	Missense_Mutation	15	79748598	C	T	23	67
BRCA	BR-MEX-172	MYL4	SNP	Missense_Mutation	17	45286880	C	T	24	80
BRCA	BR-MEX-172	TCEB3B	SNP	Missense_Mutation	18	44560873	C	T	23	18
BRCA	BR-MEX-172	DCAF15	SNP	Missense_Mutation	19	14070127	G	C	42	56
BRCA	BR-MEX-172	NLRP7	SNP	Missense_Mutation	19	55451396	G	A	38	58
BRCA	BR-MEX-172	U2AF2	SNP	Missense_Mutation	19	56170579	G	T	39	68
BRCA	BR-MEX-172	PAX3	SNP	Missense_Mutation	2	223066731	G	A	43	98
BRCA	BR-MEX-172	KCNQ2	SNP	Missense_Mutation	20	62038650	C	T	31	99
BRCA	BR-MEX-172	HUWE1	SNP	Silent	23	53591676	A	G	7	51
BRCA	BR-MEX-172	ATRX	SNP	Missense_Mutation	23	76813029	G	A	45	96
BRCA	BR-MEX-172	SEPSECS	SNP	Silent	4	25127366	A	C	7	55
BRCA	BR-MEX-172	C5orf53	SNP	Silent	5	139508211	A	G	4	74
BRCA	BR-MEX-172	RASGRF2	SNP	Missense_Mutation	5	80419581	C	A	24	97
BRCA	BR-MEX-172	AEBP1	SNP	Missense_Mutation	7	44150329	A	G	12	69
BRCA	BR-MEX-172	KCNB2	SNP	Missense_Mutation	8	73848825	C	A	24	100
BRCA	BR-MEX-172	JAK2	SNP	Splice_Site	9	5022214	G	T	44	86
BRCA	BR-MEX-174	COL11A1	SNP	Splice_site	1	103474070	C	T	22	41
BRCA	BR-MEX-174	DHRS3	SNP	Missense_Mutation	1	12639412	T	C	52	90
BRCA	BR-MEX-174	RHBG	SNP	Silent	1	156348060	C	T	28	54
BRCA	BR-MEX-174	TRIM67	SNP	Nonsense_Mutation	1	231337131	C	T	21	84
BRCA	BR-MEX-174	PKD2L1	SNP	Missense_Mutation	10	102055955	T	A	58	91
BRCA	BR-MEX-174	OR8B12	SNP	Silent	11	124412786	A	T	3	48
BRCA	BR-MEX-174	OR9I1	SNP	Silent	11	57886887	G	A	39	40
BRCA	BR-MEX-174	ITPR2	SNP	Splice_Site	12	26553192	C	G	28	68
BRCA	BR-MEX-174	PLXNC1	SNP	Missense_Mutation	12	94654563	G	A	40	100
BRCA	BR-MEX-174	SLAIN1	SNP	Missense_Mutation	13	78337287	C	A	29	78
BRCA	BR-MEX-174	PYGL	SNP	Splice_site	14	51383450	C	A	21	40
BRCA	BR-MEX-174	SMG1	SNP	Missense_Mutation	16	18887474	A	C	4	78
BRCA	BR-MEX-174	PRPF8	SNP	Missense_Mutation	17	1577883	A	T	3	79
BRCA	BR-MEX-174	C19orf12	SNP	Silent	19	30199288	C	A	25	50
BRCA	BR-MEX-174	RHPN2	SNP	Silent	19	33481435	G	A	36	53
BRCA	BR-MEX-174	LILRB4	SNP	Missense_Mutation	19	55175678	C	T	32	45
BRCA	BR-MEX-174	NLRP11	SNP	Missense_Mutation	19	56319297	T	C	58	52
BRCA	BR-MEX-174	NPHP1	SNP	Missense_Mutation	2	110907764	G	A	41	86
BRCA	BR-MEX-174	RIF1	SNP	Missense_Mutation	2	152285410	T	C	61	90
BRCA	BR-MEX-174	RAPGEF4	SNP	Missense_Mutation	2	173879313	G	C	33	89
BRCA	BR-MEX-174	TTN	SNP	Missense_Mutation	2	179539769	C	T	29	63
BRCA	BR-MEX-174	SLC5A6	SNP	Nonsense_Mutation	2	27430240	G	T	44	97
BRCA	BR-MEX-174	LTBP1	SNP	Missense_Mutation	2	33567992	A	G	7	64
BRCA	BR-MEX-174	EXOC6B	SNP	Missense_Mutation	2	72707787	C	G	32	48
BRCA	BR-MEX-174	CPNE1	SNP	Missense_Mutation	20	34220769	G	C	33	85
BRCA	BR-MEX-174	SPO11	SNP	Silent	20	55904950	G	A	35	55
BRCA	BR-MEX-174	TTC38	SNP	Missense_Mutation	22	46669929	C	A	25	62
BRCA	BR-MEX-174	GPR101	SNP	Silent	23	136112553	G	C	37	72
BRCA	BR-MEX-174	MAP7D2	SNP	Missense_Mutation	23	20073864	C	T	31	75
BRCA	BR-MEX-174	FAM47B	SNP	Missense_Mutation	23	34962567	G	C	36	46
BRCA	BR-MEX-174	SMC1A	SNP	Silent	23	53423221	G	A	34	80
BRCA	BR-MEX-174	SMC4	SNP	Missense_Mutation	3	160150243	G	C	43	100
BRCA	BR-MEX-174	YEATS2	SNP	Splice_site	3	183471914	G	C	41	63
BRCA	BR-MEX-174	CACNA1D	SNP	Splice_site	3	53815693	T	C	59	53
BRCA	BR-MEX-174	WDR1	SNP	Missense_Mutation	4	10099376	A	C	4	88
BRCA	BR-MEX-174	FBXW7	SNP	Missense_Mutation	4	153268128	G	A	33	99
BRCA	BR-MEX-174	CCNG2	SNP	Silent	4	78087008	T	A	54	52
BRCA	BR-MEX-174	ARHGAP24	SNP	Silent	4	86491787	C	T	28	61
BRCA	BR-MEX-174	KIAA1949	SNP	Missense_Mutation	6	30653297	G	C	33	46
BRCA	BR-MEX-174	ITPR3	SNP	Missense_Mutation	6	33632962	G	A	37	61
BRCA	BR-MEX-174	LAMB4	SNP	Silent	7	107748142	G	T	43	51
BRCA	BR-MEX-174	PCLO	SNP	Missense_Mutation	7	82544572	C	T	21	100
BRCA	BR-MEX-174	ZNF34	SNP	Missense_Mutation	8	145999971	C	G	20	58
BRCA	BR-MEX-174	IKBKAP	SNP	Silent	9	111673441	G	C	33	57
BRCA	BR-MEX-174	LRRC8A	SNP	Missense_Mutation	9	131669963	T	A	58	90
BRCA	BR-MEX-184	CD5L	SNP	Silent	1	157804402	G	A	39	30
BRCA	BR-MEX-184	EDN2	SNP	Missense_Mutation	1	41945075	C	T	19	46
BRCA	BR-MEX-184	CDH15	SNP	Missense_Mutation	16	89257772	C	G	25	52
BRCA	BR-MEX-184	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	BR-MEX-184	TBCCD1	SNP	Silent	3	186272405	A	G	2	49
BRCA	BR-MEX-184	ALS2CL	SNP	Missense_Mutation	3	46722820	G	A	39	57
BRCA	BR-MEX-184	PCDHB1	SNP	Silent	5	140431784	G	A	38	30
BRCA	BR-MEX-184	GPRC6A	SNP	Silent	6	117113764	T	C	52	48
BRCA	BR-MEX-184	ITPR3	SNP	Splice_Site	6	33644791	G	A	34	80
BRCA	BR-MEX-184	LMBRD1	SNP	Silent	6	70410693	T	C	62	49
BRCA	BR-MEX-184	GPR124	SNP	Missense_Mutation	8	37691600	G	A	38	59
BRCA	BR-MEX-186	MGST3	SNP	Missense_Mutation	1	165619167	A	G	4	74
BRCA	BR-MEX-186	SMG7	SNP	Silent	1	183514423	G	A	38	49
BRCA	BR-MEX-186	POLA2	SNP	Missense_Mutation	11	65064625	G	A	38	93
BRCA	BR-MEX-186	KLHDC5	SNP	Missense_Mutation	12	27951028	C	T	31	40
BRCA	BR-MEX-186	TMBIM6	SNP	Missense_Mutation	12	50146796	A	G	3	90
BRCA	BR-MEX-186	SNX33	SNP	Silent	15	75941560	G	A	46	56
BRCA	BR-MEX-186	RNF138	SNP	Missense_Mutation	18	29709107	A	T	5	67
BRCA	BR-MEX-186	SYT3	SNP	Silent	19	51128485	G	A	38	53
BRCA	BR-MEX-186	ZNF419	SNP	Missense_Mutation	19	58005147	T	G	56	79
BRCA	BR-MEX-186	MUC16	SNP	Missense_Mutation	19	9045860	G	T	47	55
BRCA	BR-MEX-186	TMC2	SNP	Missense_Mutation	20	2591173	C	T	19	65
BRCA	BR-MEX-186	TRPM2	SNP	Nonsense_Mutation	21	45838349	G	A	43	74
BRCA	BR-MEX-186	APEX2	SNP	Missense_Mutation	23	55033135	G	C	39	92
BRCA	BR-MEX-186	MLL3	SNP	Splice_Site	7	152012424	C	A	20	90
BRCA	BR-MEX-186	PALM2-AKAP2	SNP	Missense_Mutation	9	112705364	G	A	38	47
BRCA	BR-MEX-186	FCN1	SNP	Missense_Mutation	9	137809657	G	A	46	49
BRCA	BR-MEX-189	CELSR2	SNP	Silent	1	109805566	C	T	29	82
BRCA	BR-MEX-189	IGSF8	SNP	Missense_Mutation	1	160064823	G	A	41	59
BRCA	BR-MEX-189	PTPN14	SNP	De_novo_Start_OutOfFrame	1	214638190	C	T	19	76
BRCA	BR-MEX-189	CABC1	SNP	Missense_Mutation	1	227170451	T	C	55	64
BRCA	BR-MEX-189	FMN2	SNP	Missense_Mutation	1	240371710	C	T	22	71
BRCA	BR-MEX-189	MEGF6	SNP	Missense_Mutation	1	3422037	C	G	30	66
BRCA	BR-MEX-189	DFFB	SNP	Missense_Mutation	1	3782342	G	T	41	49
BRCA	BR-MEX-189	NUP160	SNP	Missense_Mutation	11	47819802	T	C	58	88
BRCA	BR-MEX-189	OR51B5	SNP	Missense_Mutation	11	5363829	C	A	32	50
BRCA	BR-MEX-189	CAPN5	SNP	Silent	11	76795941	G	A	40	25
BRCA	BR-MEX-189	FAT3	SNP	Missense_Mutation	11	92085550	T	G	64	91
BRCA	BR-MEX-189	ANAPC5	SNP	Silent	12	121756167	G	A	47	32
BRCA	BR-MEX-189	POLE	SNP	Missense_Mutation	12	133219884	C	T	27	40
BRCA	BR-MEX-189	SPATS2	SNP	Missense_Mutation	12	49888642	G	A	44	60
BRCA	BR-MEX-189	SCNN1A	SNP	Silent	12	6483839	C	T	27	31
BRCA	BR-MEX-189	FAM90A1	SNP	Silent	12	8374868	G	A	41	42
BRCA	BR-MEX-189	TRPC4	SNP	Missense_Mutation	13	38211114	C	T	30	83
BRCA	BR-MEX-189	AHNAK2	SNP	Missense_Mutation	14	105411871	C	T	28	60
BRCA	BR-MEX-189	CLMN	SNP	Missense_Mutation	14	95670223	T	A	56	53
BRCA	BR-MEX-189	GCOM1	SNP	Nonsense_Mutation	15	58006740	C	T	25	84
BRCA	BR-MEX-189	MEGF11	SNP	Missense_Mutation	15	66273209	G	T	42	57
BRCA	BR-MEX-189	PARP6	SNP	Missense_Mutation	15	72559149	C	G	20	74
BRCA	BR-MEX-189	HCN4	SNP	Silent	15	73616590	G	A	33	51
BRCA	BR-MEX-189	XYLT1	SNP	Missense_Mutation	16	17353252	G	A	46	69
BRCA	BR-MEX-189	NLRC3	SNP	Silent	16	3598732	G	A	40	33
BRCA	BR-MEX-189	IFT20	SNP	Missense_Mutation	17	26656297	G	A	37	46
BRCA	BR-MEX-189	C17orf104	SNP	Missense_Mutation	17	42744581	T	A	52	61
BRCA	BR-MEX-189	TOM1L1	SNP	Missense_Mutation	17	53016349	C	G	20	50
BRCA	BR-MEX-189	TP53	SNP	Missense_Mutation	17	7577538	C	T	23	80
BRCA	BR-MEX-189	CSNK1G2	SNP	Missense_Mutation	19	1978686	C	G	18	67
BRCA	BR-MEX-189	PNMAL1	SNP	Silent	19	46973315	G	A	39	36
BRCA	BR-MEX-189	TRPM8	SNP	Missense_Mutation	2	234847729	A	C	8	88
BRCA	BR-MEX-189	ITSN2	SNP	Missense_Mutation	2	24494669	C	G	24	60
BRCA	BR-MEX-189	ASB3	SNP	Missense_Mutation	2	53955957	G	A	33	73
BRCA	BR-MEX-189	C2orf42	SNP	Missense_Mutation	2	70408736	C	T	19	71
BRCA	BR-MEX-189	CHRNA4	SNP	Missense_Mutation	20	61982141	C	T	31	98
BRCA	BR-MEX-189	CNKSR2	SNP	Missense_Mutation	23	21667081	G	C	33	95
BRCA	BR-MEX-189	?	SNP	Missense_Mutation	23	51150820	G	C	46	41
BRCA	BR-MEX-189	PHKA1	SNP	Silent	23	71872406	G	A	34	64
BRCA	BR-MEX-189	ZCCHC5	SNP	Missense_Mutation	23	77913371	G	A	35	52
BRCA	BR-MEX-189	NAA15	SNP	Missense_Mutation	4	140262197	C	G	29	98
BRCA	BR-MEX-189	TTC37	SNP	Missense_Mutation	5	94839611	C	T	26	74
BRCA	BR-MEX-189	HIST1H4C	SNP	Silent	6	26104244	C	T	30	52
BRCA	BR-MEX-189	EEF1A1	SNP	Missense_Mutation	6	74228896	A	G	12	89
BRCA	BR-MEX-189	CASP2	SNP	Missense_Mutation	7	143002132	C	G	24	83
BRCA	BR-MEX-189	OR2A14	SNP	Missense_Mutation	7	143826872	G	A	38	68
BRCA	BR-MEX-189	TXNDC3	SNP	Nonsense_Mutation	7	37889884	C	T	19	53
BRCA	BR-MEX-189	URGCP	SNP	Missense_Mutation	7	43917628	C	G	30	42
BRCA	BR-MEX-189	RHBDD2	SNP	Missense_Mutation	7	75511419	C	T	31	53
BRCA	BR-MEX-189	FZD6	SNP	Missense_Mutation	8	104341964	G	C	33	97
BRCA	BR-MEX-189	ATAD2	SNP	Missense_Mutation	8	124360428	C	T	17	83
BRCA	BR-MEX-189	MYC	SNP	Missense_Mutation	8	128753155	G	A	37	69
BRCA	BR-MEX-189	ZNF696	SNP	Missense_Mutation	8	144378912	G	A	38	49
BRCA	BR-MEX-189	SURF6	SNP	Silent	9	136199104	C	T	27	42
BRCA	BR-MEX-189	FAM69B	SNP	Missense_Mutation	9	139612054	G	T	38	58
BRCA	BR-MEX-189	TRPM3	SNP	Missense_Mutation	9	73426130	C	T	27	74
BRCA	BR-MEX-189	TRPM3	SNP	Silent	9	73479419	T	C	52	54
BRCA	BR-MEX-189	PTPRD	SNP	Missense_Mutation	9	8492893	G	C	46	83
BRCA	BR-MEX-191	POGZ	SNP	Missense_Mutation	1	151377925	C	T	30	71
BRCA	BR-MEX-191	ADAR	SNP	Missense_Mutation	1	154562791	G	C	33	100
BRCA	BR-MEX-191	INSRR	SNP	Missense_Mutation	1	156811211	C	T	30	55
BRCA	BR-MEX-191	TMEM82	SNP	Missense_Mutation	1	16074123	C	G	32	69
BRCA	BR-MEX-191	NOS1AP	SNP	Missense_Mutation	1	162337072	G	A	37	50
BRCA	BR-MEX-191	METTL13	SNP	Missense_Mutation	1	171765849	G	A	45	60
BRCA	BR-MEX-191	LHX9	SNP	Missense_Mutation	1	197896833	G	A	45	99
BRCA	BR-MEX-191	ADIPOR1	SNP	Missense_Mutation	1	202920096	C	G	32	64
BRCA	BR-MEX-191	CD34	SNP	Missense_Mutation	1	208062031	C	G	24	73
BRCA	BR-MEX-191	USH2A	SNP	Missense_Mutation	1	215990524	C	T	29	63
BRCA	BR-MEX-191	RAB3GAP2	SNP	Missense_Mutation	1	220324607	G	C	33	35
BRCA	BR-MEX-191	ITPKB	SNP	Missense_Mutation	1	226924676	G	C	45	66
BRCA	BR-MEX-191	SNAP47	SNP	Missense_Mutation	1	227946884	G	A	35	54
BRCA	BR-MEX-191	TARBP1	SNP	Missense_Mutation	1	234534239	C	G	29	65
BRCA	BR-MEX-191	NLRP3	SNP	Missense_Mutation	1	247587724	C	T	27	49
BRCA	BR-MEX-191	RPS6KA1	SNP	Silent	1	26898345	G	A	45	59
BRCA	BR-MEX-191	TXLNA	SNP	Missense_Mutation	1	32646028	G	C	37	75
BRCA	BR-MEX-191	DFFB	SNP	Missense_Mutation	1	3784601	G	A	39	85
BRCA	BR-MEX-191	TIE1	SNP	Splice_site	1	43784908	C	T	29	60
BRCA	BR-MEX-191	KDM4A	SNP	Silent	1	44137438	C	T	29	62
BRCA	BR-MEX-191	DMBX1	SNP	Missense_Mutation	1	46976751	G	C	45	66
BRCA	BR-MEX-191	SPATA6	SNP	Silent	1	48771545	C	T	32	72
BRCA	BR-MEX-191	HPS6	SNP	Missense_Mutation	10	103826756	G	A	40	39
BRCA	BR-MEX-191	PDCD4	SNP	Missense_Mutation	10	112653904	A	G	8	80
BRCA	BR-MEX-191	ACSL5	SNP	Silent	10	114181778	G	A	45	36
BRCA	BR-MEX-191	DOCK1	SNP	Silent	10	128908605	C	T	32	63
BRCA	BR-MEX-191	OPTN	SNP	Missense_Mutation	10	13151184	G	T	41	68
BRCA	BR-MEX-191	DCLRE1C	SNP	Missense_Mutation	10	14951318	C	T	29	60
BRCA	BR-MEX-191	RPP38	SNP	Missense_Mutation	10	15146109	C	G	30	68
BRCA	BR-MEX-191	CACNB2	SNP	Missense_Mutation	10	18690929	G	T	33	89
BRCA	BR-MEX-191	MYO3A	SNP	Missense_Mutation	10	26482172	C	A	22	70
BRCA	BR-MEX-191	SVIL	SNP	Missense_Mutation	10	29822269	G	T	45	81
BRCA	BR-MEX-191	DIP2C	SNP	Silent	10	428673	G	C	45	59
BRCA	BR-MEX-191	ALOX5	SNP	Missense_Mutation	10	45919559	G	A	45	95
BRCA	BR-MEX-191	DDX50	SNP	Missense_Mutation	10	70694601	G	C	41	94
BRCA	BR-MEX-191	YAP1	SNP	Missense_Mutation	11	101984929	C	T	29	100
BRCA	BR-MEX-191	MRVI1	SNP	Missense_Mutation	11	10603527	C	G	32	59
BRCA	BR-MEX-191	ATM	SNP	Splice_Site	11	108202170	G	A	33	99
BRCA	BR-MEX-191	SIK2	SNP	Silent	11	111593394	C	G	21	53
BRCA	BR-MEX-191	SIK3	SNP	Missense_Mutation	11	116718246	G	A	33	70
BRCA	BR-MEX-191	TECTA	SNP	Missense_Mutation	11	121032788	C	G	32	53
BRCA	BR-MEX-191	SORL1	SNP	Nonsense_Mutation	11	121384891	C	T	21	100
BRCA	BR-MEX-191	ADAMTS8	SNP	Missense_Mutation	11	130286102	G	A	43	82
BRCA	BR-MEX-191	IGSF9B	SNP	Missense_Mutation	11	133790202	G	C	47	95
BRCA	BR-MEX-191	COPB1	SNP	Missense_Mutation	11	14515967	G	A	45	78
BRCA	BR-MEX-191	PDE3B	SNP	Missense_Mutation	11	14880738	C	G	30	51
BRCA	BR-MEX-191	ANO3	SNP	Nonsense_Mutation	11	26463594	C	G	29	77
BRCA	BR-MEX-191	MAPK8IP1	SNP	Missense_Mutation	11	45924713	G	A	45	74
BRCA	BR-MEX-191	OR52I1	SNP	Missense_Mutation	11	4615893	C	G	32	66
BRCA	BR-MEX-191	SPRYD5	SNP	Splice_site	11	55658611	G	C	45	56
BRCA	BR-MEX-191	OR5M9	SNP	Missense_Mutation	11	56230353	G	C	33	53
BRCA	BR-MEX-191	LRRC55	SNP	Missense_Mutation	11	56949836	C	T	27	65
BRCA	BR-MEX-191	C11orf48	SNP	Missense_Mutation	11	62435024	G	A	41	60
BRCA	BR-MEX-191	NAALADL1	SNP	Missense_Mutation	11	64813370	T	A	50	69
BRCA	BR-MEX-191	FRMD8	SNP	Missense_Mutation	11	65161533	G	A	37	69
BRCA	BR-MEX-191	SIPA1	SNP	Missense_Mutation	11	65417904	C	G	32	57
BRCA	BR-MEX-191	CTSF	SNP	Missense_Mutation	11	66333338	G	C	33	71
BRCA	BR-MEX-191	PC	SNP	Missense_Mutation	11	66619271	C	T	19	77
BRCA	BR-MEX-191	RHOD	SNP	Silent	11	66839013	C	T	29	50
BRCA	BR-MEX-191	GRM5	SNP	Missense_Mutation	11	88780710	C	T	29	100
BRCA	BR-MEX-191	GPR83	SNP	Nonsense_Mutation	11	94113479	G	A	45	63
BRCA	BR-MEX-191	WEE1	SNP	Missense_Mutation	11	9598777	G	A	45	88
BRCA	BR-MEX-191	SBF2	SNP	Missense_Mutation	11	9810679	C	T	29	100
BRCA	BR-MEX-191	PAH	SNP	Missense_Mutation	12	103288531	C	T	32	67
BRCA	BR-MEX-191	GCN1L1	SNP	Silent	12	120583096	C	T	29	62
BRCA	BR-MEX-191	PXN	SNP	Silent	12	120660682	C	T	27	40
BRCA	BR-MEX-191	ESPL1	SNP	Missense_Mutation	12	53676084	C	T	31	58
BRCA	BR-MEX-191	OS9	SNP	Missense_Mutation	12	58112049	G	A	45	66
BRCA	BR-MEX-191	METTL1	SNP	Missense_Mutation	12	58163644	G	A	40	65
BRCA	BR-MEX-191	SCNN1A	SNP	Missense_Mutation	12	6483829	G	T	42	52
BRCA	BR-MEX-191	TAPBPL	SNP	Missense_Mutation	12	6566883	C	G	29	84
BRCA	BR-MEX-191	IRAK3	SNP	Missense_Mutation	12	66638285	G	C	45	61
BRCA	BR-MEX-191	C1R	SNP	Missense_Mutation	12	7188474	C	T	31	99
BRCA	BR-MEX-191	BBS10	SNP	Silent	12	76741998	G	A	45	50
BRCA	BR-MEX-191	PCCA	SNP	Splice_site	13	100962160	G	A	37	97
BRCA	BR-MEX-191	NAA16	SNP	Silent	13	41943335	G	A	33	47
BRCA	BR-MEX-191	NAA16	SNP	Splice_site	13	41947914	C	G	29	94
BRCA	BR-MEX-191	MYCBP2	SNP	Silent	13	77713421	C	T	32	78
BRCA	BR-MEX-191	IPO5	SNP	Splice_site	13	98668033	G	T	45	100
BRCA	BR-MEX-191	RNF31	SNP	Missense_Mutation	14	24619538	A	G	14	82
BRCA	BR-MEX-191	TGM1	SNP	Silent	14	24724586	G	C	33	61
BRCA	BR-MEX-191	SPTB	SNP	Missense_Mutation	14	65242109	C	G	29	97
BRCA	BR-MEX-191	DPF3	SNP	Missense_Mutation	14	73181170	C	T	27	60
BRCA	BR-MEX-191	LGMN	SNP	Silent	14	93180775	G	A	45	52
BRCA	BR-MEX-191	MGA	SNP	Missense_Mutation	15	42003288	C	T	32	58
BRCA	BR-MEX-191	TUBGCP4	SNP	Missense_Mutation	15	43689501	C	T	29	100
BRCA	BR-MEX-191	ZNF280D	SNP	Silent	15	56974484	G	A	45	64
BRCA	BR-MEX-191	FAM81A	SNP	Missense_Mutation	15	59752232	G	A	45	80
BRCA	BR-MEX-191	DENND4A	SNP	Silent	15	65964214	C	G	31	50
BRCA	BR-MEX-191	BBS4	SNP	Missense_Mutation	15	72987548	C	G	29	68
BRCA	BR-MEX-191	ANPEP	SNP	Missense_Mutation	15	90347501	G	A	45	93
BRCA	BR-MEX-191	DNAH3	SNP	Missense_Mutation	16	20946683	C	G	30	86
BRCA	BR-MEX-191	PKD1	SNP	Missense_Mutation	16	2161006	C	G	32	62
BRCA	BR-MEX-191	IL21R	SNP	Silent	16	27454419	G	A	43	44
BRCA	BR-MEX-191	ATXN2L	SNP	Nonsense_Mutation	16	28843649	C	G	29	67
BRCA	BR-MEX-191	PKMYT1	SNP	Missense_Mutation	16	3023200	C	T	29	75
BRCA	BR-MEX-191	PRSS8	SNP	Missense_Mutation	16	31144213	C	T	31	23
BRCA	BR-MEX-191	ZNF200	SNP	Missense_Mutation	16	3274253	C	G	30	81
BRCA	BR-MEX-191	ADCY9	SNP	Missense_Mutation	16	4016837	C	T	29	98
BRCA	BR-MEX-191	ZNF500	SNP	Missense_Mutation	16	4810552	G	T	33	57
BRCA	BR-MEX-191	SEPT12	SNP	Nonsense_Mutation	16	4829784	G	A	39	63
BRCA	BR-MEX-191	SEC14L5	SNP	Missense_Mutation	16	5057456	C	T	29	80
BRCA	BR-MEX-191	AMFR	SNP	Missense_Mutation	16	56435650	G	A	41	54
BRCA	BR-MEX-191	E2F4	SNP	Missense_Mutation	16	67229871	C	A	32	89
BRCA	BR-MEX-191	TERF2	SNP	Missense_Mutation	16	69419521	G	T	45	77
BRCA	BR-MEX-191	MYH4	SNP	Silent	17	10348605	G	A	37	42
BRCA	BR-MEX-191	LGALS9	SNP	Missense_Mutation	17	25970616	C	G	30	50
BRCA	BR-MEX-191	SUPT6H	SNP	Silent	17	27010351	G	T	45	49
BRCA	BR-MEX-191	C17orf75	SNP	Missense_Mutation	17	30658878	C	G	32	74
BRCA	BR-MEX-191	SCPEP1	SNP	Missense_Mutation	17	55074329	G	C	33	74
BRCA	BR-MEX-191	MPO	SNP	Missense_Mutation	17	56348162	G	A	45	100
BRCA	BR-MEX-191	TACO1	SNP	Missense_Mutation	17	61684676	C	G	32	54
BRCA	BR-MEX-191	ABCA6	SNP	Missense_Mutation	17	67119462	C	T	29	59
BRCA	BR-MEX-191	C17orf28	SNP	Missense_Mutation	17	72948004	G	C	33	55
BRCA	BR-MEX-191	AZI1	SNP	Missense_Mutation	17	79166627	C	T	30	67
BRCA	BR-MEX-191	FHOD3	SNP	Missense_Mutation	18	34324104	C	G	21	82
BRCA	BR-MEX-191	CNN1	SNP	Missense_Mutation	19	11660477	C	T	31	78
BRCA	BR-MEX-191	ZNF442	SNP	Missense_Mutation	19	12460687	G	C	33	42
BRCA	BR-MEX-191	EMR2	SNP	Silent	19	14865928	C	T	31	11
BRCA	BR-MEX-191	KIAA1683	SNP	Silent	19	18378122	G	T	43	45
BRCA	BR-MEX-191	KLHL26	SNP	Silent	19	18775095	C	G	29	56
BRCA	BR-MEX-191	DOT1L	SNP	Missense_Mutation	19	2222245	G	C	41	64
BRCA	BR-MEX-191	PIP5K1C	SNP	Silent	19	3644197	C	T	29	52
BRCA	BR-MEX-191	SIPA1L3	SNP	Missense_Mutation	19	38579444	G	A	41	79
BRCA	BR-MEX-191	ATCAY	SNP	Missense_Mutation	19	3918841	G	C	45	66
BRCA	BR-MEX-191	AKT2	SNP	Missense_Mutation	19	40742257	G	C	45	57
BRCA	BR-MEX-191	LMTK3	SNP	Missense_Mutation	19	49002411	C	T	30	53
BRCA	BR-MEX-191	ZNF432	SNP	Missense_Mutation	19	52538568	G	C	33	43
BRCA	BR-MEX-191	TTYH1	SNP	Missense_Mutation	19	54932471	T	C	62	81
BRCA	BR-MEX-191	KIR3DL1	SNP	Nonsense_Mutation	19	55331284	G	T	33	51
BRCA	BR-MEX-191	FBN3	SNP	Missense_Mutation	19	8138031	C	T	19	55
BRCA	BR-MEX-191	ZC3H8	SNP	Nonsense_Mutation	2	113012536	G	C	45	68
BRCA	BR-MEX-191	ERCC3	SNP	Silent	2	128028991	G	C	41	53
BRCA	BR-MEX-191	LCT	SNP	Silent	2	136566320	C	T	31	47
BRCA	BR-MEX-191	THSD7B	SNP	Silent	2	137928339	C	T	29	49
BRCA	BR-MEX-191	TMEFF2	SNP	Nonsense_Mutation	2	193059202	C	A	31	68
BRCA	BR-MEX-191	HECW2	SNP	Missense_Mutation	2	197080652	C	T	31	100
BRCA	BR-MEX-191	MAP2	SNP	Missense_Mutation	2	210558119	G	A	33	60
BRCA	BR-MEX-191	SLC16A14	SNP	Nonsense_Mutation	2	230902158	G	A	45	67
BRCA	BR-MEX-191	ALPP	SNP	Missense_Mutation	2	233245355	G	C	45	61
BRCA	BR-MEX-191	HDLBP	SNP	Silent	2	242178104	G	A	45	54
BRCA	BR-MEX-191	OTOF	SNP	Missense_Mutation	2	26686896	C	T	27	63
BRCA	BR-MEX-191	GALNT14	SNP	Silent	2	31360914	G	A	37	48
BRCA	BR-MEX-191	UGP2	SNP	Missense_Mutation	2	64114665	C	G	32	100
BRCA	BR-MEX-191	SLC4A5	SNP	Missense_Mutation	2	74474254	C	T	29	95
BRCA	BR-MEX-191	KIF16B	SNP	Missense_Mutation	20	16486469	G	C	33	69
BRCA	BR-MEX-191	FAM83D	SNP	Missense_Mutation	20	37580315	C	T	29	51
BRCA	BR-MEX-191	FAM83D	SNP	Silent	20	37580527	C	T	29	52
BRCA	BR-MEX-191	MATN4	SNP	Missense_Mutation	20	43932985	C	T	27	96
BRCA	BR-MEX-191	ZNF831	SNP	Missense_Mutation	20	57767443	C	T	23	59
BRCA	BR-MEX-191	LSM14B	SNP	Missense_Mutation	20	60704899	G	T	33	74
BRCA	BR-MEX-191	MYT1	SNP	Silent	20	62871798	C	G	32	56
BRCA	BR-MEX-191	USP25	SNP	Missense_Mutation	21	17205800	G	C	33	62
BRCA	BR-MEX-191	NCAM2	SNP	Missense_Mutation	21	22658648	G	C	33	94
BRCA	BR-MEX-191	USP16	SNP	Missense_Mutation	21	30414404	C	G	29	55
BRCA	BR-MEX-191	ATF4	SNP	Missense_Mutation	22	39917858	G	A	33	81
BRCA	BR-MEX-191	MEI1	SNP	Nonsense_Mutation	22	42177389	C	T	29	79
BRCA	BR-MEX-191	COL4A5	SNP	Missense_Mutation	23	107866013	C	G	32	48
BRCA	BR-MEX-191	FLNA	SNP	Missense_Mutation	23	153579315	C	T	30	99
BRCA	BR-MEX-191	SRPX	SNP	Missense_Mutation	23	38033517	C	T	30	95
BRCA	BR-MEX-191	KDM5C	SNP	Missense_Mutation	23	53230767	C	G	32	94
BRCA	BR-MEX-191	HUWE1	SNP	Silent	23	53595771	G	A	33	75
BRCA	BR-MEX-191	LAS1L	SNP	Missense_Mutation	23	64749560	G	A	45	50
BRCA	BR-MEX-191	NLGN3	SNP	Missense_Mutation	23	70373380	G	C	33	94
BRCA	BR-MEX-191	TMEM111	SNP	Missense_Mutation	3	10028301	C	A	22	93
BRCA	BR-MEX-191	TFG	SNP	Splice_site	3	100451514	C	T	29	97
BRCA	BR-MEX-191	IMPG2	SNP	Missense_Mutation	3	100992530	C	A	32	69
BRCA	BR-MEX-191	KPNA1	SNP	Missense_Mutation	3	122146005	C	G	29	95
BRCA	BR-MEX-191	PCCB	SNP	Missense_Mutation	3	136016889	C	G	30	95
BRCA	BR-MEX-191	COPB2	SNP	Silent	3	139077872	G	A	33	52
BRCA	BR-MEX-191	PLS1	SNP	Silent	3	142422751	G	A	35	48
BRCA	BR-MEX-191	CAPN7	SNP	Missense_Mutation	3	15271977	G	A	45	85
BRCA	BR-MEX-191	MFSD1	SNP	Missense_Mutation	3	158538024	G	A	45	97
BRCA	BR-MEX-191	SI	SNP	Missense_Mutation	3	164780235	C	T	32	96
BRCA	BR-MEX-191	EIF4G1	SNP	Silent	3	184038750	G	A	33	74
BRCA	BR-MEX-191	VPS8	SNP	Nonsense_Mutation	3	184580790	C	T	29	88
BRCA	BR-MEX-191	EIF4A2	SNP	Missense_Mutation	3	186503832	G	A	33	78
BRCA	BR-MEX-191	KCNH8	SNP	Missense_Mutation	3	19554535	A	T	11	65
BRCA	BR-MEX-191	CMTM6	SNP	Missense_Mutation	3	32529444	C	G	29	81
BRCA	BR-MEX-191	WDR48	SNP	Missense_Mutation	3	39118639	G	C	45	100
BRCA	BR-MEX-191	ULK4	SNP	Silent	3	41607568	G	A	45	57
BRCA	BR-MEX-191	CCR2	SNP	Missense_Mutation	3	46399180	C	G	32	54
BRCA	BR-MEX-191	CCR2	SNP	Missense_Mutation	3	46399405	C	G	32	51
BRCA	BR-MEX-191	SLC25A20	SNP	Missense_Mutation	3	48921550	G	A	40	45
BRCA	BR-MEX-191	HYAL1	SNP	Silent	3	50337926	C	T	32	47
BRCA	BR-MEX-191	STAB1	SNP	Silent	3	52558178	C	G	32	55
BRCA	BR-MEX-191	FILIP1L	SNP	Missense_Mutation	3	99567747	C	T	32	100
BRCA	BR-MEX-191	EMCN	SNP	Silent	4	101331505	G	A	36	49
BRCA	BR-MEX-191	NKX3-2	SNP	Splice_site	4	13544151	G	A	38	50
BRCA	BR-MEX-191	GAB1	SNP	Missense_Mutation	4	144354748	C	G	32	65
BRCA	BR-MEX-191	TDO2	SNP	Nonsense_Mutation	4	156838575	C	T	29	100
BRCA	BR-MEX-191	TDO2	SNP	Nonsense_Mutation	4	156839361	C	G	29	98
BRCA	BR-MEX-191	LCORL	SNP	Missense_Mutation	4	17974463	C	G	32	81
BRCA	BR-MEX-191	FGFR3	SNP	Silent	4	1807598	C	T	29	51
BRCA	BR-MEX-191	KCTD8	SNP	Silent	4	44449728	G	A	45	61
BRCA	BR-MEX-191	ADAMTS3	SNP	Silent	4	73149255	G	C	45	44
BRCA	BR-MEX-191	AFAP1	SNP	Missense_Mutation	4	7780519	G	T	41	44
BRCA	BR-MEX-191	MCC	SNP	Missense_Mutation	5	112364650	C	T	29	94
BRCA	BR-MEX-191	TRIM36	SNP	Missense_Mutation	5	114482834	G	A	45	52
BRCA	BR-MEX-191	BRD8	SNP	Missense_Mutation	5	137475766	G	C	33	50
BRCA	BR-MEX-191	KIAA0947	SNP	Missense_Mutation	5	5462326	C	G	32	50
BRCA	BR-MEX-191	SFRS12	SNP	Silent	5	65466572	A	G	3	52
BRCA	BR-MEX-191	CMYA5	SNP	Missense_Mutation	5	79095251	A	G	7	55
BRCA	BR-MEX-191	VCAN	SNP	Silent	5	82835887	C	T	31	21
BRCA	BR-MEX-191	GPR98	SNP	Missense_Mutation	5	90106143	G	T	45	46
BRCA	BR-MEX-191	GPR98	SNP	Missense_Mutation	5	90106693	G	T	45	62
BRCA	BR-MEX-191	C6orf182	SNP	Missense_Mutation	6	109468085	G	C	33	54
BRCA	BR-MEX-191	SYNE1	SNP	Missense_Mutation	6	152757218	C	T	32	94
BRCA	BR-MEX-191	JARID2	SNP	Missense_Mutation	6	15487620	G	C	33	73
BRCA	BR-MEX-191	GPLD1	SNP	Splice_site	6	24433593	C	G	29	82
BRCA	BR-MEX-191	BTN3A3	SNP	Splice_Site	6	26448955	G	A	33	68
BRCA	BR-MEX-191	ZNF165	SNP	Missense_Mutation	6	28057159	G	A	45	49
BRCA	BR-MEX-191	NKAPL	SNP	Nonsense_Mutation	6	28228014	C	T	29	89
BRCA	BR-MEX-191	RIPK1	SNP	Missense_Mutation	6	3104504	C	G	32	69
BRCA	BR-MEX-191	MICB	SNP	Missense_Mutation	6	31474837	G	C	33	69
BRCA	BR-MEX-191	TUBB2A	SNP	Missense_Mutation	6	3154963	C	T	32	99
BRCA	BR-MEX-191	TUBB2B	SNP	Missense_Mutation	6	3226851	T	C	51	91
BRCA	BR-MEX-191	MDGA1	SNP	Silent	6	37619938	G	T	43	48
BRCA	BR-MEX-191	DNAH8	SNP	Missense_Mutation	6	38899616	C	G	29	57
BRCA	BR-MEX-191	CUL7	SNP	Missense_Mutation	6	43014631	C	T	30	87
BRCA	BR-MEX-191	AARS2	SNP	Missense_Mutation	6	44270202	C	T	29	61
BRCA	BR-MEX-191	AARS2	SNP	Silent	6	44272011	C	T	29	51
BRCA	BR-MEX-191	CDYL	SNP	Missense_Mutation	6	4937841	G	A	37	100
BRCA	BR-MEX-191	BAI3	SNP	Missense_Mutation	6	70071345	G	A	45	96
BRCA	BR-MEX-191	PM20D2	SNP	Missense_Mutation	6	89871929	G	A	33	66
BRCA	BR-MEX-191	POU3F2	SNP	Nonsense_Mutation	6	99283533	G	T	37	77
BRCA	BR-MEX-191	LAMB1	SNP	Missense_Mutation	7	107564494	C	G	32	85
BRCA	BR-MEX-191	TRIM24	SNP	Missense_Mutation	7	138269676	G	A	33	78
BRCA	BR-MEX-191	SVOPL	SNP	Missense_Mutation	7	138313099	G	C	33	50
BRCA	BR-MEX-191	ZNF282	SNP	Missense_Mutation	7	148921382	G	C	33	64
BRCA	BR-MEX-191	SSPO	SNP	Silent	7	149512399	C	G	32	48
BRCA	BR-MEX-191	NUB1	SNP	Missense_Mutation	7	151046253	G	T	41	83
BRCA	BR-MEX-191	DPP6	SNP	Missense_Mutation	7	154263951	G	A	45	78
BRCA	BR-MEX-191	SOSTDC1	SNP	Silent	7	16502323	G	A	45	70
BRCA	BR-MEX-191	VPS13B	SNP	Missense_Mutation	8	100711838	G	C	33	68
BRCA	BR-MEX-191	GRHL2	SNP	Silent	8	102656428	G	A	33	64
BRCA	BR-MEX-191	CSMD3	SNP	Silent	8	113317113	G	A	33	41
BRCA	BR-MEX-191	EIF3H	SNP	Silent	8	117671134	A	G	8	49
BRCA	BR-MEX-191	ADCY8	SNP	Missense_Mutation	8	131916158	C	T	29	100
BRCA	BR-MEX-191	PLEC	SNP	Missense_Mutation	8	144995622	G	C	41	72
BRCA	BR-MEX-191	GPAA1	SNP	Missense_Mutation	8	145138183	C	A	31	59
BRCA	BR-MEX-191	MTMR7	SNP	Missense_Mutation	8	17169082	G	C	45	96
BRCA	BR-MEX-191	KIAA1967	SNP	Nonsense_Mutation	8	22471694	C	G	29	74
BRCA	BR-MEX-191	RB1CC1	SNP	Silent	8	53570319	T	C	49	48
BRCA	BR-MEX-191	ZFHX4	SNP	Missense_Mutation	8	77618825	G	A	45	74
BRCA	BR-MEX-191	FKBP15	SNP	Silent	9	115965295	G	A	45	51
BRCA	BR-MEX-191	ASS1	SNP	Nonsense_Mutation	9	133327668	C	A	31	94
BRCA	BR-MEX-191	BAT2L1	SNP	Silent	9	134321945	G	T	39	60
BRCA	BR-MEX-191	NELF	SNP	Silent	9	140351884	C	T	30	76
BRCA	BR-MEX-191	IFNA21	SNP	Silent	9	21166243	C	T	29	52
BRCA	BR-MEX-191	APTX	SNP	Splice_site	9	33001603	C	G	32	55
BRCA	BR-MEX-191	RECK	SNP	Missense_Mutation	9	36102125	G	A	33	93
BRCA	BR-MEX-191	FRMPD1	SNP	Silent	9	37740391	C	T	21	50
BRCA	BR-MEX-191	NTRK2	SNP	Missense_Mutation	9	87549090	C	G	29	65
BRCA	BR-MEX-191	HIATL1	SNP	Missense_Mutation	9	97200796	G	A	45	93
BRCA	BR-MEX-191	PTCH1	SNP	Silent	9	98268846	C	T	29	59
BRCA	BR-MEX-192	ZNF672	SNP	Silent	1	249142523	C	T	27	56
BRCA	BR-MEX-192	ANO3	SNP	Missense_Mutation	11	26556047	G	A	37	92
BRCA	BR-MEX-192	IPO7	SNP	Missense_Mutation	11	9446513	T	G	61	65
BRCA	BR-MEX-192	WASF3	SNP	Missense_Mutation	13	27250750	G	A	38	98
BRCA	BR-MEX-192	INF2	SNP	Splice_site	14	105246551	C	T	30	95
BRCA	BR-MEX-192	GREM1	SNP	Nonsense_Mutation	15	33023037	C	A	31	82
BRCA	BR-MEX-192	TP53	SNP	Missense_Mutation	17	7577121	G	A	38	65
BRCA	BR-MEX-192	HKR1	SNP	Missense_Mutation	19	37853462	C	G	29	52
BRCA	BR-MEX-192	SHD	SNP	Silent	19	4284794	A	G	7	16
BRCA	BR-MEX-192	PPM1F	SNP	Missense_Mutation	22	22288511	G	C	42	80
BRCA	BR-MEX-192	ZC3H7B	SNP	Missense_Mutation	22	41728220	G	A	40	40
BRCA	BR-MEX-192	SH3KBP1	SNP	Silent	23	19854324	G	C	47	76
BRCA	BR-MEX-192	KDM5C	SNP	Missense_Mutation	23	53231149	G	A	39	80
BRCA	BR-MEX-192	HUWE1	SNP	Missense_Mutation	23	53566768	C	T	31	89
BRCA	BR-MEX-192	SLC6A1	SNP	Splice_site	3	11064023	C	T	27	99
BRCA	BR-MEX-192	MFN1	SNP	Silent	3	179103407	G	A	38	27
BRCA	BR-MEX-192	FAM19A4	SNP	Missense_Mutation	3	68782298	G	A	38	78
BRCA	BR-MEX-192	DCHS2	SNP	Silent	4	155256111	A	G	7	43
BRCA	BR-MEX-192	STK32B	SNP	Silent	4	5461856	C	T	27	45
BRCA	BR-MEX-192	PKD2	SNP	Missense_Mutation	4	88959472	A	G	5	78
BRCA	BR-MEX-192	MAP1B	SNP	Missense_Mutation	5	71490215	T	C	55	94
BRCA	BR-MEX-192	MAP1B	SNP	Missense_Mutation	5	71499572	C	T	23	64
BRCA	BR-MEX-192	CNR1	SNP	Missense_Mutation	6	88854338	T	C	59	93
BRCA	BR-MEX-192	PIK3CG	SNP	Missense_Mutation	7	106509373	G	A	42	69
BRCA	BR-MEX-192	PTPRN2	SNP	Missense_Mutation	7	157387998	C	T	31	98
BRCA	BR-MEX-193	IQGAP3	SNP	Missense_Mutation	1	156526434	G	C	34	64
BRCA	BR-MEX-193	BAT2L2	SNP	Silent	1	171519334	T	G	60	54
BRCA	BR-MEX-193	CACNA1E	SNP	Missense_Mutation	1	181745258	G	A	40	100
BRCA	BR-MEX-193	PPP1R12B	SNP	Missense_Mutation	1	202531928	C	A	30	55
BRCA	BR-MEX-193	ELTD1	SNP	Missense_Mutation	1	79387407	C	G	28	51
BRCA	BR-MEX-193	SLK	SNP	Missense_Mutation	10	105785473	T	A	50	92
BRCA	BR-MEX-193	MASTL	SNP	Missense_Mutation	10	27459011	A	C	7	60
BRCA	BR-MEX-193	KIF5B	SNP	Splice_Site	10	32311186	C	G	28	88
BRCA	BR-MEX-193	SBF2	SNP	Silent	11	10051318	C	A	18	52
BRCA	BR-MEX-193	AGBL2	SNP	Missense_Mutation	11	47707469	C	A	17	96
BRCA	BR-MEX-193	OR52B2	SNP	Missense_Mutation	11	6190984	A	C	6	61
BRCA	BR-MEX-193	INTS5	SNP	Missense_Mutation	11	62416143	A	G	5	55
BRCA	BR-MEX-193	FLRT1	SNP	Missense_Mutation	11	63884472	A	G	7	50
BRCA	BR-MEX-193	SNX32	SNP	Silent	11	65616954	C	T	24	59
BRCA	BR-MEX-193	FOSL1	SNP	Missense_Mutation	11	65660457	C	T	28	67
BRCA	BR-MEX-193	MAPKAPK5	SNP	Missense_Mutation	12	112321488	G	A	37	96
BRCA	BR-MEX-193	C12orf51	SNP	Missense_Mutation	12	112630418	C	T	27	57
BRCA	BR-MEX-193	KIF5A	SNP	Silent	12	57968917	C	G	32	52
BRCA	BR-MEX-193	FRS2	SNP	Silent	12	69968156	T	C	59	56
BRCA	BR-MEX-193	DLK1	SNP	Missense_Mutation	14	101194760	C	T	22	67
BRCA	BR-MEX-193	YLPM1	SNP	Silent	14	75279383	G	A	45	45
BRCA	BR-MEX-193	MYO5A	SNP	Missense_Mutation	15	52632470	T	A	62	79
BRCA	BR-MEX-193	C15orf44	SNP	Missense_Mutation	15	65871778	C	T	30	88
BRCA	BR-MEX-193	TELO2	SNP	Silent	16	1550679	G	A	35	51
BRCA	BR-MEX-193	ACSM2A	SNP	Missense_Mutation	16	20480985	G	T	34	51
BRCA	BR-MEX-193	CREBBP	SNP	Splice_Site	16	3790551	C	A	24	100
BRCA	BR-MEX-193	CBX2	SNP	Silent	17	77758460	C	T	23	33
BRCA	BR-MEX-193	MC5R	SNP	Missense_Mutation	18	13826450	G	C	39	59
BRCA	BR-MEX-193	TSHZ3	SNP	Nonsense_Mutation	19	31768165	G	T	45	99
BRCA	BR-MEX-193	NFKBID	SNP	Splice_Site	19	36387961	C	T	24	49
BRCA	BR-MEX-193	SIGLEC5	SNP	Missense_Mutation	19	52131281	A	G	11	44
BRCA	BR-MEX-193	MUC16	SNP	Missense_Mutation	19	9006669	G	T	48	48
BRCA	BR-MEX-193	ANKRD5	SNP	Silent	20	10025077	A	G	11	53
BRCA	BR-MEX-193	LRRC3	SNP	Missense_Mutation	21	45876541	G	A	38	72
BRCA	BR-MEX-193	MCAT	SNP	Silent	22	43533105	C	G	29	57
BRCA	BR-MEX-193	BCORL1	SNP	Nonsense_Mutation	23	129162789	C	T	19	65
BRCA	BR-MEX-193	SLC10A3	SNP	Missense_Mutation	23	153716033	G	A	40	82
BRCA	BR-MEX-193	F8	SNP	Missense_Mutation	23	154157140	T	C	62	69
BRCA	BR-MEX-193	DMD	SNP	Missense_Mutation	23	32867913	G	A	35	81
BRCA	BR-MEX-193	ITGB1BP2	SNP	Missense_Mutation	23	70522267	A	G	14	72
BRCA	BR-MEX-193	COL6A6	SNP	Nonsense_Mutation	3	130361855	C	T	27	70
BRCA	BR-MEX-193	CNTN6	SNP	Missense_Mutation	3	1443125	C	A	21	93
BRCA	BR-MEX-193	MECOM	SNP	Missense_Mutation	3	168833735	G	C	41	96
BRCA	BR-MEX-193	C3orf59	SNP	Missense_Mutation	3	192516987	T	G	51	77
BRCA	BR-MEX-193	COL7A1	SNP	Missense_Mutation	3	48617743	C	T	19	74
BRCA	BR-MEX-193	PROS1	SNP	Missense_Mutation	3	93603712	C	T	31	90
BRCA	BR-MEX-193	ARAP2	SNP	Missense_Mutation	4	36231059	C	T	28	56
BRCA	BR-MEX-193	MARCH6	SNP	Missense_Mutation	5	10415624	C	T	31	100
BRCA	BR-MEX-193	MYO10	SNP	Silent	5	16668572	C	T	24	56
BRCA	BR-MEX-193	DAB2	SNP	Missense_Mutation	5	39382863	C	G	22	99
BRCA	BR-MEX-193	JARID2	SNP	Missense_Mutation	6	15374409	C	G	32	95
BRCA	BR-MEX-193	SLC17A1	SNP	Missense_Mutation	6	25813096	A	G	8	44
BRCA	BR-MEX-193	UHRF1BP1	SNP	Silent	6	34825177	C	T	30	35
BRCA	BR-MEX-193	GCK	SNP	Splice_Site	7	44185095	C	G	18	100
BRCA	BR-MEX-193	MYOM2	SNP	Missense_Mutation	8	2071203	C	A	24	55
BRCA	BR-MEX-193	SMARCA2	SNP	Splice_site	9	2097386	G	A	43	100
BRCA	BR-MEX-198	ASH1L	DEL	Frame_Shift_Del	1	155448618	TTTTT	-	56	77
BRCA	BR-MEX-198	OR2T3	SNP	Missense	1	248637199	T	C	62	46
BRCA	BR-MEX-198	TM2D1	SNP	Missense_Mutation	1	62190776	G	A	39	62
BRCA	BR-MEX-198	PNLIPRP2	SNP	Missense_Mutation	10	118385556	G	T	41	51
BRCA	BR-MEX-198	UCN3	SNP	Silent	10	5416148	G	A	38	37
BRCA	BR-MEX-198	NLRP6	INS	Frame_Shift_Ins	11	280539	-	C	42	52
BRCA	BR-MEX-198	GLTP	SNP	Missense_Mutation	12	110290508	A	G	9	86
BRCA	BR-MEX-198	GCN1L1	SNP	Silent	12	120616670	C	T	31	47
BRCA	BR-MEX-198	KRT86	SNP	Silent	12	52699062	C	T	23	18
BRCA	BR-MEX-198	HSP90AA1	SNP	Missense	14	102552305	G	C	35	73
BRCA	BR-MEX-198	ACOT6	DEL	Frame_Shift_Del	14	74086347	A	-	9	53
BRCA	BR-MEX-198	ISCA2	SNP	Nonsense_Mutation	14	74961063	C	G	29	78
BRCA	BR-MEX-198	TMEM85	SNP	Missense_Mutation	15	34520701	G	A	43	81
BRCA	BR-MEX-198	LDHD	SNP	Missense	16	75146334	C	T	27	47
BRCA	BR-MEX-198	SRP68	SNP	Missense_Mutation	17	74057612	T	C	63	88
BRCA	BR-MEX-198	ZNF431	SNP	Silent	19	21366462	A	G	11	46
BRCA	BR-MEX-198	SLC7A9	SNP	Silent	19	33350783	A	G	7	23
BRCA	BR-MEX-198	ZNF578	SNP	Missense_Mutation	19	53015345	G	A	45	50
BRCA	BR-MEX-198	MAP2K7	SNP	Splice_Site	19	7977080	G	A	48	92
BRCA	BR-MEX-198	POTEE	SNP	Missense	2	132021211	G	A	39	76
BRCA	BR-MEX-198	GKN2	SNP	Missense_Mutation	2	69177317	C	T	27	76
BRCA	BR-MEX-198	MYT1	SNP	Silent	20	62854467	T	C	58	50
BRCA	BR-MEX-198	PWP2	SNP	Silent	21	45535718	C	T	27	50
BRCA	BR-MEX-198	SLITRK2	SNP	Missense_Mutation	23	144905032	G	T	36	52
BRCA	BR-MEX-198	GPR50	SNP	Nonsense_Mutation	23	150348959	C	T	23	75
BRCA	BR-MEX-198	MYLK	SNP	Silent	3	123444846	C	A	25	80
BRCA	BR-MEX-198	APBB2	SNP	Missense_Mutation	4	41016317	T	C	61	58
BRCA	BR-MEX-198	IQGAP2	SNP	Missense_Mutation	5	75906974	A	T	12	89
BRCA	BR-MEX-198	DTX2	SNP	Missense	7	76109884	G	A	42	79
BRCA	BR-MEX-198	RIMS2	SNP	Missense_Mutation	8	104709370	A	G	9	92
BRCA	BR-MEX-200	F11R	SNP	Missense_Mutation	1	160969475	A	T	3	48
BRCA	BR-MEX-200	TPR	SNP	Missense_Mutation	1	186296647	A	G	14	76
BRCA	BR-MEX-200	AVPR1B	SNP	Missense_Mutation	1	206224496	C	A	26	50
BRCA	BR-MEX-200	PTP4A2	SNP	Missense_Mutation	1	32377414	T	C	50	90
BRCA	BR-MEX-200	GDI2	SNP	Missense_Mutation	10	5827986	C	T	27	86
BRCA	BR-MEX-200	OR5I1	SNP	Missense_Mutation	11	55703409	C	A	29	57
BRCA	BR-MEX-200	NUP107	SNP	Silent	12	69115632	C	T	32	55
BRCA	BR-MEX-200	CHD8	SNP	Nonsense_Mutation	14	21876961	C	T	30	99
BRCA	BR-MEX-200	EFTUD1	SNP	Silent	15	82444518	T	C	55	48
BRCA	BR-MEX-200	ASB16	SNP	Missense_Mutation	17	42248404	G	A	38	73
BRCA	BR-MEX-200	SYT3	SNP	Missense_Mutation	19	51140602	G	A	38	70
BRCA	BR-MEX-200	CPS1	SNP	Nonsense_Mutation	2	211518788	C	T	23	64
BRCA	BR-MEX-200	GTSE1	SNP	Missense_Mutation	22	46712282	C	A	29	81
BRCA	BR-MEX-200	DPY19L2P2	SNP	Missense	7	102850718	G	C	33	53
BRCA	BR-MEX-200	LAMB1	SNP	Missense_Mutation	7	107591707	C	T	30	100
BRCA	BR-MEX-200	SOX17	DEL	In_frame_Del	8	55370874	CGGGCC	-	27	82
BRCA	TCGA-A1-A0SB	ABLIM1	SNP	Missense_Mutation	10	116247760	T	C	51	86
BRCA	TCGA-A1-A0SB	MAP6	SNP	Missense_Mutation	11	75317003	G	C	38	68
BRCA	TCGA-A1-A0SB	ADAMTS20	SNP	Missense_Mutation	12	43944926	T	C	49	88
BRCA	TCGA-A1-A0SB	SPTB	SNP	Missense_Mutation	14	65266493	T	C	59	68
BRCA	TCGA-A1-A0SB	PIEZO1	SNP	Missense_Mutation	16	88790292	T	C	55	74
BRCA	TCGA-A1-A0SB	SOX15	SNP	Missense_Mutation	17	7491739	T	G	60	47
BRCA	TCGA-A1-A0SB	WIZ	SNP	Silent	19	15547798	T	G	59	32
BRCA	TCGA-A1-A0SB	ZNF574	SNP	Missense_Mutation	19	42585066	G	A	33	81
BRCA	TCGA-A1-A0SB	OTOR	SNP	Missense_Mutation	20	16730581	G	A	40	67
BRCA	TCGA-A1-A0SB	P2RY10	SNP	Silent	23	78216689	C	T	24	46
BRCA	TCGA-A1-A0SB	MYB	INS	Frame_Shift_Ins	6	135507043	-	A	49	69
BRCA	TCGA-A1-A0SB	AGAP3	SNP	Missense_Mutation	7	150840441	C	T	19	85
BRCA	TCGA-A1-A0SB	STEAP1B	DEL	Frame_Shift_Del	7	22533452	CA	-	29	52
BRCA	TCGA-A1-A0SD	KIRREL	SNP	Missense_Mutation	1	158054332	G	A	39	70
BRCA	TCGA-A1-A0SD	DCAF8	SNP	Silent	1	160210108	C	T	32	56
BRCA	TCGA-A1-A0SD	TLR5	INS	Frame_Shift_Ins	1	223284687	-	A	41	86
BRCA	TCGA-A1-A0SD	SLC44A3	SNP	Missense_Mutation	1	95293148	G	A	45	64
BRCA	TCGA-A1-A0SD	ANK3	SNP	Missense_Mutation	10	61834851	G	C	47	88
BRCA	TCGA-A1-A0SD	SIDT2	SNP	Missense_Mutation	11	117063930	A	G	8	91
BRCA	TCGA-A1-A0SD	ZFP91	SNP	Missense_Mutation	11	58381738	T	A	49	89
BRCA	TCGA-A1-A0SD	HECTD4	SNP	Missense_Mutation	12	112622620	C	T	31	96
BRCA	TCGA-A1-A0SD	ZNF740	SNP	Missense_Mutation	12	53581370	T	C	53	81
BRCA	TCGA-A1-A0SD	WDR72	SNP	Missense_Mutation	15	53907842	A	T	16	48
BRCA	TCGA-A1-A0SD	PKD1	SNP	Silent	16	2153508	C	T	31	59
BRCA	TCGA-A1-A0SD	SLFN14	SNP	Missense_Mutation	17	33884688	G	A	37	50
BRCA	TCGA-A1-A0SD	EIF3G	SNP	Silent	19	10226187	G	A	40	49
BRCA	TCGA-A1-A0SD	KLK15	SNP	Missense_Mutation	19	51329938	C	T	22	73
BRCA	TCGA-A1-A0SD	ZNF544	SNP	Missense_Mutation	19	58773290	G	C	45	46
BRCA	TCGA-A1-A0SD	LRP2	SNP	Missense_Mutation	2	170070247	T	G	50	81
BRCA	TCGA-A1-A0SD	SNX5	DEL	In_Frame_Del	20	17928176	CTG	-	24	56
BRCA	TCGA-A1-A0SD	CSTL1	SNP	Silent	20	23420938	C	T	28	56
BRCA	TCGA-A1-A0SD	FAM182B	SNP	Missense_Mutation	20	25755889	A	T	7	50
BRCA	TCGA-A1-A0SD	L1CAM	SNP	Missense_Mutation	23	153132281	C	T	19	96
BRCA	TCGA-A1-A0SD	CXorf58	SNP	Missense_Mutation	23	23956735	G	A	40	58
BRCA	TCGA-A1-A0SD	CASK	SNP	Missense_Mutation	23	41379771	T	C	49	88
BRCA	TCGA-A1-A0SD	CPEB2	SNP	Missense_Mutation	4	15067943	A	G	8	94
BRCA	TCGA-A1-A0SD	LRBA	SNP	Splice_site	4	151821369	C	A	18	87
BRCA	TCGA-A1-A0SD	PCDHA6	SNP	Missense_Mutation	5	140209165	C	T	27	55
BRCA	TCGA-A1-A0SD	PGC	SNP	Missense_Mutation	6	41712443	G	A	39	54
BRCA	TCGA-A1-A0SD	CDHR3	SNP	Missense_Mutation	7	105636709	G	A	40	65
BRCA	TCGA-A1-A0SD	COL14A1	SNP	Missense_Mutation	8	121344960	G	A	38	66
BRCA	TCGA-A1-A0SD	RP1	DEL	In_Frame_Del	8	55542731	TTTGAAATGCTTGGTCAA	-	56	59
BRCA	TCGA-A1-A0SD	CNTFR	SNP	Missense_Mutation	9	34564705	C	T	23	87
BRCA	TCGA-A1-A0SE	KLHL20	SNP	Silent	1	173725095	A	G	16	33
BRCA	TCGA-A1-A0SE	DCDC2B	SNP	Silent	1	32678163	C	T	31	43
BRCA	TCGA-A1-A0SE	SYDE2	SNP	Missense_Mutation	1	85656315	T	C	52	65
BRCA	TCGA-A1-A0SE	TBC1D12	SNP	Missense_Mutation	10	96291053	A	T	10	88
BRCA	TCGA-A1-A0SE	B3GNT1	SNP	Missense_Mutation	11	66114207	C	A	29	56
BRCA	TCGA-A1-A0SE	RBM26	INS	Frame_Shift_Ins	13	79945989	-	A	57	86
BRCA	TCGA-A1-A0SE	MGA	SNP	Missense_Mutation	15	42054350	A	G	9	82
BRCA	TCGA-A1-A0SE	UNC13C	DEL	In_Frame_Del	15	54306424	AAG	-	5	66
BRCA	TCGA-A1-A0SE	ARRDC4	SNP	Missense_Mutation	15	98513237	T	C	51	91
BRCA	TCGA-A1-A0SE	CDH1	SNP	Missense_Mutation	16	68844139	G	A	45	94
BRCA	TCGA-A1-A0SE	ZNF737	SNP	Missense_Mutation	19	20735296	C	T	18	42
BRCA	TCGA-A1-A0SE	ZNF541	SNP	Missense_Mutation	19	48044180	G	A	39	68
BRCA	TCGA-A1-A0SE	MUC16	SNP	Missense_Mutation	19	9087224	C	T	30	49
BRCA	TCGA-A1-A0SE	APLF	SNP	Silent	2	68765324	G	A	33	58
BRCA	TCGA-A1-A0SE	FHL1	SNP	Missense_Mutation	23	135290662	G	A	37	79
BRCA	TCGA-A1-A0SE	TBL1X	SNP	Silent	23	9659623	T	C	50	52
BRCA	TCGA-A1-A0SE	LRRIQ4	SNP	Nonsense_Mutation	3	169550926	G	A	41	84
BRCA	TCGA-A1-A0SE	IMPDH2	SNP	Silent	3	49066745	C	T	25	51
BRCA	TCGA-A1-A0SE	LRIG1	SNP	Silent	3	66463429	A	G	12	57
BRCA	TCGA-A1-A0SE	C3orf38	SNP	Missense_Mutation	3	88205481	A	T	8	76
BRCA	TCGA-A1-A0SE	MED23	SNP	Nonsense_Mutation	6	131948806	C	A	30	88
BRCA	TCGA-A1-A0SE	MRPS18B	SNP	Missense_Mutation	6	30587563	C	T	27	50
BRCA	TCGA-A1-A0SE	WDR91	SNP	Missense_Mutation	7	134890705	T	C	51	89
BRCA	TCGA-A1-A0SE	WDR86	SNP	Silent	7	151093204	C	T	32	59
BRCA	TCGA-A1-A0SE	TXNDC3	SNP	Silent	7	37936496	G	T	45	58
BRCA	TCGA-A1-A0SE	TXNDC3	SNP	Missense_Mutation	7	37936498	C	T	18	53
BRCA	TCGA-A1-A0SE	SDR16C5	SNP	Missense_Mutation	8	57228816	G	A	36	47
BRCA	TCGA-A1-A0SE	ZFHX4	SNP	Missense_Mutation	8	77620129	G	T	43	100
BRCA	TCGA-A1-A0SE	FAM102A	DNP	Missense_Mutation	9	130712790	TC	AA	54	76
BRCA	TCGA-A1-A0SE	PTCH1	SNP	Silent	9	98220334	G	A	38	47
BRCA	TCGA-A1-A0SF	KDM5B	SNP	Missense_Mutation	1	202743781	T	C	51	78
BRCA	TCGA-A1-A0SF	TP73	SNP	Missense_Mutation	1	3599659	C	T	29	81
BRCA	TCGA-A1-A0SF	PHF13	SNP	Missense_Mutation	1	6676836	A	C	3	62
BRCA	TCGA-A1-A0SF	MUC5B	SNP	Missense_Mutation	11	1266400	C	A	30	57
BRCA	TCGA-A1-A0SF	MUC5B	SNP	Silent	11	1270767	T	C	59	22
BRCA	TCGA-A1-A0SF	EXT2	SNP	Missense_Mutation	11	44129420	C	T	29	100
BRCA	TCGA-A1-A0SF	PPFIBP2	SNP	Missense_Mutation	11	7672087	C	T	29	72
BRCA	TCGA-A1-A0SF	KRT86	SNP	Missense_Mutation	12	52700027	G	A	38	83
BRCA	TCGA-A1-A0SF	ACRBP	SNP	Missense_Mutation	12	6753643	C	T	30	60
BRCA	TCGA-A1-A0SF	BEST3	SNP	Nonsense_Mutation	12	70072563	C	A	29	98
BRCA	TCGA-A1-A0SF	KITLG	SNP	Missense_Mutation	12	88939633	G	A	33	54
BRCA	TCGA-A1-A0SF	SKOR1	SNP	Missense_Mutation	15	68118729	C	T	27	95
BRCA	TCGA-A1-A0SF	SPPL2C	SNP	Silent	17	43922887	C	T	23	34
BRCA	TCGA-A1-A0SF	ZNF91	SNP	Missense_Mutation	19	23543097	G	A	45	47
BRCA	TCGA-A1-A0SF	MUC16	SNP	Missense_Mutation	19	9072222	C	A	26	50
BRCA	TCGA-A1-A0SF	ARL6IP6	SNP	Silent	2	153591548	C	T	32	53
BRCA	TCGA-A1-A0SF	FIGN	SNP	Missense_Mutation	2	164468287	C	A	25	77
BRCA	TCGA-A1-A0SF	CECR2	SNP	Missense_Mutation	22	18018340	G	A	44	70
BRCA	TCGA-A1-A0SF	DDX53	SNP	Missense_Mutation	23	23018658	G	A	41	39
BRCA	TCGA-A1-A0SF	H2AFZ	SNP	Missense_Mutation	4	100870052	G	A	38	94
BRCA	TCGA-A1-A0SF	HMGB2	SNP	Missense_Mutation	4	174254704	C	T	30	100
BRCA	TCGA-A1-A0SF	PROP1	SNP	Missense_Mutation	5	177420032	C	T	27	80
BRCA	TCGA-A1-A0SF	KIF2A	SNP	Missense_Mutation	5	61643897	C	T	29	97
BRCA	TCGA-A1-A0SF	UBE2QL1	SNP	Missense_Mutation	5	6491344	G	A	33	97
BRCA	TCGA-A1-A0SF	KPNA5	SNP	Missense_Mutation	6	117013507	G	A	45	80
BRCA	TCGA-A1-A0SF	LAMA2	SNP	Silent	6	129722392	C	T	27	52
BRCA	TCGA-A1-A0SF	CUL7	SNP	Missense_Mutation	6	43018789	G	A	38	85
BRCA	TCGA-A1-A0SF	MTO1	SNP	Splice_Site	6	74176211	G	A	33	96
BRCA	TCGA-A1-A0SF	ST7	SNP	Silent	7	116593630	C	T	29	55
BRCA	TCGA-A1-A0SF	PLXNA4	SNP	Missense_Mutation	7	131831430	C	T	31	100
BRCA	TCGA-A1-A0SF	MLL3	SNP	Missense_Mutation	7	151879568	G	A	33	70
BRCA	TCGA-A1-A0SF	EPPK1	SNP	Silent	8	144940615	G	A	39	34
BRCA	TCGA-A1-A0SF	PTPRD	SNP	Silent	9	8471022	C	T	32	58
BRCA	TCGA-A1-A0SG	PADI2	SNP	Missense_Mutation	1	17419026	G	C	33	69
BRCA	TCGA-A1-A0SG	CSMD2	SNP	Silent	1	34090712	G	A	37	35
BRCA	TCGA-A1-A0SG	FRMD4A	SNP	Missense_Mutation	10	13852832	A	G	16	91
BRCA	TCGA-A1-A0SG	TYSND1	SNP	Missense_Mutation	10	71905831	G	A	37	60
BRCA	TCGA-A1-A0SG	SYNPO2L	SNP	Silent	10	75406545	C	T	26	59
BRCA	TCGA-A1-A0SG	LMO3	SNP	Missense_Mutation	12	16713405	G	C	38	61
BRCA	TCGA-A1-A0SG	NAV3	SNP	Missense_Mutation	12	78569098	G	A	33	100
BRCA	TCGA-A1-A0SG	CEP290	SNP	Missense_Mutation	12	88472999	C	T	20	96
BRCA	TCGA-A1-A0SG	MRPL46	SNP	Nonsense_Mutation	15	89008087	G	A	39	52
BRCA	TCGA-A1-A0SG	CHP2	SNP	Missense_Mutation	16	23768630	G	A	40	42
BRCA	TCGA-A1-A0SG	TMEM99	SNP	Missense_Mutation	17	38991201	G	A	36	60
BRCA	TCGA-A1-A0SG	MIS12	SNP	Missense_Mutation	17	5392578	A	T	16	42
BRCA	TCGA-A1-A0SG	ERN1	SNP	Silent	17	62130251	G	A	33	61
BRCA	TCGA-A1-A0SG	WDR88	SNP	Silent	19	33639782	C	T	19	47
BRCA	TCGA-A1-A0SG	SCN7A	SNP	Missense_Mutation	2	167263066	C	T	19	67
BRCA	TCGA-A1-A0SG	C2orf73	SNP	Silent	2	54587645	T	C	51	49
BRCA	TCGA-A1-A0SG	BPIFB3	SNP	Missense_Mutation	20	31656715	C	A	26	56
BRCA	TCGA-A1-A0SG	ZNF217	SNP	Missense_Mutation	20	52192368	C	A	31	66
BRCA	TCGA-A1-A0SG	DSCAM	SNP	Missense_Mutation	21	41719645	G	A	38	63
BRCA	TCGA-A1-A0SG	CECR2	SNP	Missense_Mutation	22	18028506	C	T	31	67
BRCA	TCGA-A1-A0SG	EWSR1	SNP	Missense_Mutation	22	29694792	G	C	42	95
BRCA	TCGA-A1-A0SG	MED12	SNP	Missense_Mutation	23	70361800	A	G	5	82
BRCA	TCGA-A1-A0SG	GRM7	SNP	Missense_Mutation	3	7620374	C	T	24	100
BRCA	TCGA-A1-A0SG	PPID	SNP	Splice_site	4	159640438	A	C	2	89
BRCA	TCGA-A1-A0SG	HSD17B4	SNP	Silent	5	118835164	C	T	21	50
BRCA	TCGA-A1-A0SG	FAT2	SNP	Missense_Mutation	5	150922760	A	T	10	92
BRCA	TCGA-A1-A0SG	MAP3K1	INS	Frame_Shift_Ins	5	56178135	-	A	17	61
BRCA	TCGA-A1-A0SG	ARC	SNP	Missense_Mutation	8	143695260	G	A	38	49
BRCA	TCGA-A1-A0SG	ADAMTSL1	SNP	Missense_Mutation	9	18684728	G	A	37	99
BRCA	TCGA-A1-A0SH	KCNT2	SNP	Missense_Mutation	1	196285071	C	A	32	100
BRCA	TCGA-A1-A0SH	NUAK2	SNP	Splice_site	1	205272579	C	T	29	67
BRCA	TCGA-A1-A0SH	CDK18	SNP	Silent	1	205494302	G	C	45	51
BRCA	TCGA-A1-A0SH	USH2A	SNP	Silent	1	216420207	G	A	33	61
BRCA	TCGA-A1-A0SH	RYR2	SNP	Missense_Mutation	1	237868586	C	G	32	57
BRCA	TCGA-A1-A0SH	AHCTF1	SNP	Nonsense_Mutation	1	247040513	C	A	30	97
BRCA	TCGA-A1-A0SH	ATPIF1	DEL	Frame_Shift_Del	1	28562879	ATGTCGACCGGGGCGCGGGCTCCATCCGGGAAGCCGG	-	4	50
BRCA	TCGA-A1-A0SH	TTC39A	SNP	Missense_Mutation	1	51754571	G	C	42	84
BRCA	TCGA-A1-A0SH	FAM171A1	SNP	Silent	10	15255676	G	A	43	46
BRCA	TCGA-A1-A0SH	CUBN	SNP	Missense_Mutation	10	16979594	G	A	41	38
BRCA	TCGA-A1-A0SH	DRGX	SNP	Missense_Mutation	10	50599285	G	C	36	67
BRCA	TCGA-A1-A0SH	ANK3	SNP	Missense_Mutation	10	61965629	T	C	51	91
BRCA	TCGA-A1-A0SH	FAM149B1	SNP	Missense_Mutation	10	74994996	G	A	45	83
BRCA	TCGA-A1-A0SH	CHCHD1	SNP	Missense_Mutation	10	75541933	G	T	39	85
BRCA	TCGA-A1-A0SH	ITIH5	SNP	Missense_Mutation	10	7605129	C	T	29	100
BRCA	TCGA-A1-A0SH	PLCE1	DEL	Frame_Shift_Del	10	96022290	TTAAGAGTAAACAGCAGCTATCGGACAACCAGAG	-	52	90
BRCA	TCGA-A1-A0SH	EXPH5	SNP	Missense_Mutation	11	108383322	C	T	32	43
BRCA	TCGA-A1-A0SH	METTL15	SNP	Missense_Mutation	11	28135038	C	G	29	54
BRCA	TCGA-A1-A0SH	SLC43A1	SNP	Silent	11	57263602	G	A	45	82
BRCA	TCGA-A1-A0SH	FAM111A	SNP	Missense_Mutation	11	58920660	G	A	33	49
BRCA	TCGA-A1-A0SH	THRSP	SNP	Silent	11	77774954	C	G	21	53
BRCA	TCGA-A1-A0SH	HCFC2	SNP	Missense_Mutation	12	104460047	G	A	41	96
BRCA	TCGA-A1-A0SH	TAS2R46	DEL	Frame_Shift_Del	12	11214632	A	-	7	55
BRCA	TCGA-A1-A0SH	MED13L	SNP	Missense_Mutation	12	116408458	G	A	45	98
BRCA	TCGA-A1-A0SH	BLOC1S1	SNP	Missense_Mutation	12	56113352	G	C	41	96
BRCA	TCGA-A1-A0SH	PZP	SNP	Missense_Mutation	12	9317862	G	T	33	93
BRCA	TCGA-A1-A0SH	RPS2P4	SNP	Silent	14	105302400	G	A	44	57
BRCA	TCGA-A1-A0SH	IPO4	SNP	Silent	14	24652347	C	G	25	46
BRCA	TCGA-A1-A0SH	C14orf37	SNP	Missense_Mutation	14	58605932	T	C	61	56
BRCA	TCGA-A1-A0SH	DAPK2	SNP	Missense_Mutation	15	64204356	A	T	6	57
BRCA	TCGA-A1-A0SH	SCAPER	SNP	Missense_Mutation	15	77057342	C	T	27	100
BRCA	TCGA-A1-A0SH	LOC440292	SNP	Missense_Mutation	15	78234749	A	T	7	66
BRCA	TCGA-A1-A0SH	ALPK3	SNP	Missense_Mutation	15	85400295	G	A	45	57
BRCA	TCGA-A1-A0SH	KLHL25	SNP	Missense_Mutation	15	86311940	A	T	8	89
BRCA	TCGA-A1-A0SH	RHCG	SNP	Nonsense_Mutation	15	90016021	G	T	45	50
BRCA	TCGA-A1-A0SH	RGMA	SNP	Silent	15	93616248	C	T	21	78
BRCA	TCGA-A1-A0SH	APOBR	SNP	Missense_Mutation	16	28506628	G	T	33	55
BRCA	TCGA-A1-A0SH	EDC4	SNP	Silent	16	67914876	C	T	25	52
BRCA	TCGA-A1-A0SH	HYDIN	SNP	Nonsense_Mutation	16	70989287	C	A	32	83
BRCA	TCGA-A1-A0SH	DHRS13	SNP	Missense_Mutation	17	27225602	C	G	32	49
BRCA	TCGA-A1-A0SH	GPR179	SNP	Silent	17	36486443	C	T	28	65
BRCA	TCGA-A1-A0SH	KRT28	SNP	Missense_Mutation	17	38955885	C	A	24	67
BRCA	TCGA-A1-A0SH	BRCA1	SNP	Nonsense_Mutation	17	41244748	G	A	45	56
BRCA	TCGA-A1-A0SH	DHX33	SNP	Silent	17	5356907	T	C	51	31
BRCA	TCGA-A1-A0SH	EVPL	SNP	Silent	17	74005590	C	T	32	54
BRCA	TCGA-A1-A0SH	TMC8	SNP	Silent	17	76134257	C	T	32	62
BRCA	TCGA-A1-A0SH	ESCO1	SNP	Nonsense_Mutation	18	19154369	G	A	45	63
BRCA	TCGA-A1-A0SH	WDR7	SNP	Missense_Mutation	18	54424074	C	G	29	64
BRCA	TCGA-A1-A0SH	ARHGAP28	SNP	Missense_Mutation	18	6837365	G	C	34	61
BRCA	TCGA-A1-A0SH	CD97	SNP	Missense_Mutation	19	14507159	G	C	41	59
BRCA	TCGA-A1-A0SH	WDR87	SNP	Missense_Mutation	19	38379723	G	T	45	44
BRCA	TCGA-A1-A0SH	GPR4	SNP	Silent	19	46094651	G	C	33	82
BRCA	TCGA-A1-A0SH	GPR32	SNP	Missense_Mutation	19	51274646	C	A	27	50
BRCA	TCGA-A1-A0SH	ZNF606	SNP	Missense_Mutation	19	58489941	T	C	57	87
BRCA	TCGA-A1-A0SH	MARCH7	SNP	Missense_Mutation	2	160585678	G	C	45	83
BRCA	TCGA-A1-A0SH	RPE	SNP	Silent	2	210882585	C	T	29	53
BRCA	TCGA-A1-A0SH	SLC19A3	SNP	Silent	2	228563717	G	C	45	36
BRCA	TCGA-A1-A0SH	FAM150B	SNP	Missense_Mutation	2	286186	G	C	41	78
BRCA	TCGA-A1-A0SH	SPTBN1	SNP	Missense_Mutation	2	54874337	G	A	33	100
BRCA	TCGA-A1-A0SH	PREX1	SNP	Silent	20	47258785	G	C	45	69
BRCA	TCGA-A1-A0SH	CCT8	SNP	Missense_Mutation	21	30439299	C	T	29	85
BRCA	TCGA-A1-A0SH	KDELR3	SNP	Missense_Mutation	22	38875700	C	G	32	48
BRCA	TCGA-A1-A0SH	PPARA	DEL	In_Frame_Del	22	46631235	GCT	-	38	39
BRCA	TCGA-A1-A0SH	H2BFWT	SNP	Nonsense_Mutation	23	103267770	C	A	31	60
BRCA	TCGA-A1-A0SH	IRS4	SNP	Missense_Mutation	23	107978508	G	C	41	93
BRCA	TCGA-A1-A0SH	ACSL4	SNP	Missense_Mutation	23	108911440	C	T	22	84
BRCA	TCGA-A1-A0SH	MTM1	SNP	Missense_Mutation	23	149828220	G	C	48	74
BRCA	TCGA-A1-A0SH	MAGEA12	SNP	Missense_Mutation	23	151900419	C	T	30	55
BRCA	TCGA-A1-A0SH	PNCK	SNP	Missense_Mutation	23	152936894	C	G	29	51
BRCA	TCGA-A1-A0SH	DMD	SNP	Missense_Mutation	23	31792151	C	T	29	86
BRCA	TCGA-A1-A0SH	UPRT	SNP	Missense_Mutation	23	74519698	C	T	23	55
BRCA	TCGA-A1-A0SH	DACH2	SNP	Silent	23	85403921	C	G	29	49
BRCA	TCGA-A1-A0SH	GOLGB1	SNP	Silent	3	121415260	G	T	41	51
BRCA	TCGA-A1-A0SH	LPP	SNP	Missense_Mutation	3	188327441	G	C	47	95
BRCA	TCGA-A1-A0SH	CNTN4	SNP	Missense_Mutation	3	3078931	G	C	45	100
BRCA	TCGA-A1-A0SH	COL7A1	SNP	Silent	3	48612826	G	A	39	50
BRCA	TCGA-A1-A0SH	IL17RD	SNP	Silent	3	57131808	G	A	39	39
BRCA	TCGA-A1-A0SH	PHF17	SNP	Missense_Mutation	4	129792615	C	G	32	82
BRCA	TCGA-A1-A0SH	PALLD	SNP	Missense_Mutation	4	169589516	G	C	45	100
BRCA	TCGA-A1-A0SH	GDF9	SNP	Missense_Mutation	5	132197631	G	C	33	64
BRCA	TCGA-A1-A0SH	TIFAB	SNP	Missense_Mutation	5	134785234	G	T	42	59
BRCA	TCGA-A1-A0SH	FBXO4	SNP	Nonsense_Mutation	5	41934239	G	T	41	97
BRCA	TCGA-A1-A0SH	BDP1	SNP	Missense_Mutation	5	70858273	G	C	33	66
BRCA	TCGA-A1-A0SH	MICAL1	SNP	Missense_Mutation	6	109770913	C	G	30	79
BRCA	TCGA-A1-A0SH	CAP2	SNP	Missense_Mutation	6	17551770	G	C	33	77
BRCA	TCGA-A1-A0SH	SLC17A4	SNP	Splice_Site	6	25776822	G	C	33	86
BRCA	TCGA-A1-A0SH	MUC21	SNP	Missense_Mutation	6	30954351	C	A	25	60
BRCA	TCGA-A1-A0SH	DNAH8	SNP	Missense_Mutation	6	38830152	G	T	47	100
BRCA	TCGA-A1-A0SH	FAM83B	SNP	Missense_Mutation	6	54791317	C	T	29	76
BRCA	TCGA-A1-A0SH	MUC12	SNP	Missense_Mutation	7	100646022	C	A	17	61
BRCA	TCGA-A1-A0SH	ANKRD7	SNP	Missense_Mutation	7	117865025	C	G	29	53
BRCA	TCGA-A1-A0SH	NOS3	SNP	Missense_Mutation	7	150706129	G	C	37	59
BRCA	TCGA-A1-A0SH	ASL	SNP	Missense_Mutation	7	65546799	C	T	28	80
BRCA	TCGA-A1-A0SH	BCL7B	SNP	Missense_Mutation	7	72957910	G	A	45	72
BRCA	TCGA-A1-A0SH	COL14A1	SNP	Missense_Mutation	8	121209170	G	C	33	71
BRCA	TCGA-A1-A0SH	CDCA2	SNP	Missense_Mutation	8	25364913	C	T	30	67
BRCA	TCGA-A1-A0SH	CSMD1	SNP	Nonsense_Mutation	8	2967831	G	A	45	63
BRCA	TCGA-A1-A0SH	KCNU1	SNP	Missense_Mutation	8	36663872	C	T	32	82
BRCA	TCGA-A1-A0SH	CYP7A1	SNP	Silent	8	59405044	G	C	45	53
BRCA	TCGA-A1-A0SH	ZFHX4	SNP	Missense_Mutation	8	77616522	G	A	45	86
BRCA	TCGA-A1-A0SH	SLC7A13	SNP	Silent	8	87242366	T	G	54	48
BRCA	TCGA-A1-A0SH	LRRC8A	SNP	Missense_Mutation	9	131671269	C	G	30	98
BRCA	TCGA-A1-A0SH	TEK	SNP	Silent	9	27169623	C	T	30	52
BRCA	TCGA-A1-A0SI	CLCC1	SNP	Missense_Mutation	1	109479811	C	G	32	58
BRCA	TCGA-A1-A0SI	HIST2H2BE	SNP	Silent	1	149857969	G	A	37	66
BRCA	TCGA-A1-A0SI	TCHH	SNP	Missense_Mutation	1	152081408	C	T	29	58
BRCA	TCGA-A1-A0SI	DAP3	SNP	Missense_Mutation	1	155686914	G	A	45	62
BRCA	TCGA-A1-A0SI	POU2F1	SNP	Splice_site	1	167301713	G	C	33	71
BRCA	TCGA-A1-A0SI	PAPPA2	SNP	Missense_Mutation	1	176664966	C	T	29	100
BRCA	TCGA-A1-A0SI	CEP350	SNP	Missense_Mutation	1	180003060	G	C	33	54
BRCA	TCGA-A1-A0SI	RGS8	SNP	Missense_Mutation	1	182617366	C	G	17	100
BRCA	TCGA-A1-A0SI	PTPRC	SNP	Silent	1	198676020	T	G	64	49
BRCA	TCGA-A1-A0SI	KIF21B	SNP	Missense_Mutation	1	200974018	G	C	37	72
BRCA	TCGA-A1-A0SI	CACNA1S	SNP	Missense_Mutation	1	201063115	G	C	37	96
BRCA	TCGA-A1-A0SI	ITPKB	SNP	Missense_Mutation	1	226924709	C	G	29	88
BRCA	TCGA-A1-A0SI	ADCK3	SNP	Missense_Mutation	1	227170601	C	G	32	66
BRCA	TCGA-A1-A0SI	ZNF436	SNP	Missense_Mutation	1	23688993	G	C	45	56
BRCA	TCGA-A1-A0SI	ZNF436	SNP	Missense_Mutation	1	23689523	G	A	41	68
BRCA	TCGA-A1-A0SI	ZBTB8OS	SNP	Silent	1	33099308	G	A	33	70
BRCA	TCGA-A1-A0SI	CSMD2	SNP	Silent	1	34209071	G	A	40	42
BRCA	TCGA-A1-A0SI	CYP4A11	SNP	Missense_Mutation	1	47400819	G	C	45	48
BRCA	TCGA-A1-A0SI	PER3	SNP	Missense_Mutation	1	7886690	G	A	37	58
BRCA	TCGA-A1-A0SI	SNX7	SNP	Silent	1	99167432	G	A	45	52
BRCA	TCGA-A1-A0SI	ELOVL3	SNP	Missense_Mutation	10	103987420	C	G	32	56
BRCA	TCGA-A1-A0SI	C10orf118	SNP	Missense_Mutation	10	115910964	C	G	32	95
BRCA	TCGA-A1-A0SI	FAM24A	SNP	Silent	10	124671228	C	G	30	51
BRCA	TCGA-A1-A0SI	IKZF5	SNP	Missense_Mutation	10	124753897	G	C	47	99
BRCA	TCGA-A1-A0SI	FAM171A1	SNP	Missense_Mutation	10	15255759	C	T	29	86
BRCA	TCGA-A1-A0SI	AKR1C1	SNP	Missense_Mutation	10	5011086	G	C	41	81
BRCA	TCGA-A1-A0SI	CDH23	SNP	Silent	10	73563078	C	G	32	62
BRCA	TCGA-A1-A0SI	KAT6B	SNP	Missense_Mutation	10	76790587	T	A	51	89
BRCA	TCGA-A1-A0SI	NCAM1	SNP	Silent	11	113076802	C	T	30	79
BRCA	TCGA-A1-A0SI	SIDT2	SNP	Missense_Mutation	11	117062717	C	T	32	96
BRCA	TCGA-A1-A0SI	C1QTNF5	SNP	Missense_Mutation	11	119215369	C	T	29	96
BRCA	TCGA-A1-A0SI	CRTAM	SNP	Missense_Mutation	11	122709265	G	C	33	57
BRCA	TCGA-A1-A0SI	QSER1	SNP	Missense_Mutation	11	32956104	G	T	34	50
BRCA	TCGA-A1-A0SI	KIAA1549L	SNP	Missense_Mutation	11	33564822	G	C	33	48
BRCA	TCGA-A1-A0SI	OR1S1	SNP	Silent	11	57982600	G	A	47	53
BRCA	TCGA-A1-A0SI	AHNAK	SNP	Silent	11	62285191	G	A	45	57
BRCA	TCGA-A1-A0SI	NXF1	SNP	Missense_Mutation	11	62564681	C	G	32	68
BRCA	TCGA-A1-A0SI	PDE2A	SNP	Splice_Site	11	72295773	C	T	32	89
BRCA	TCGA-A1-A0SI	SYT9	SNP	Missense_Mutation	11	7324494	G	T	45	94
BRCA	TCGA-A1-A0SI	C11orf30	SNP	Missense_Mutation	11	76257017	G	C	45	95
BRCA	TCGA-A1-A0SI	C11orf82	SNP	Nonsense_Mutation	11	82643268	G	A	41	52
BRCA	TCGA-A1-A0SI	SBF2	SNP	Silent	11	9834112	C	T	29	48
BRCA	TCGA-A1-A0SI	HSP90B1	SNP	Splice_Site	12	104337515	G	C	33	98
BRCA	TCGA-A1-A0SI	VSIG10	SNP	Silent	12	118511688	C	T	29	52
BRCA	TCGA-A1-A0SI	KIF21A	SNP	Missense_Mutation	12	39716479	A	G	16	64
BRCA	TCGA-A1-A0SI	KRT84	SNP	Missense_Mutation	12	52775231	C	G	29	76
BRCA	TCGA-A1-A0SI	ANO2	SNP	Missense_Mutation	12	5848485	C	G	32	83
BRCA	TCGA-A1-A0SI	XPOT	SNP	Silent	12	64825441	C	G	29	68
BRCA	TCGA-A1-A0SI	GRIP1	SNP	Missense_Mutation	12	66800072	C	G	32	87
BRCA	TCGA-A1-A0SI	ERCC5	SNP	Silent	13	103510687	C	T	22	39
BRCA	TCGA-A1-A0SI	ATP8A2	SNP	Splice_Site	13	26155956	G	C	33	100
BRCA	TCGA-A1-A0SI	RB1	SNP	Missense_Mutation	13	48941691	G	A	33	84
BRCA	TCGA-A1-A0SI	RB1	SNP	Nonsense_Mutation	13	49039501	C	G	29	91
BRCA	TCGA-A1-A0SI	TMX1	SNP	Silent	14	51707049	C	G	30	32
BRCA	TCGA-A1-A0SI	SIX4	SNP	Missense_Mutation	14	61186663	C	G	32	61
BRCA	TCGA-A1-A0SI	CHURC1-FNTB	SNP	Nonsense_Mutation	14	65392796	C	T	29	92
BRCA	TCGA-A1-A0SI	PLEKHH1	SNP	Missense_Mutation	14	68029300	C	A	30	59
BRCA	TCGA-A1-A0SI	SLC8A3	SNP	Silent	14	70633483	G	A	33	78
BRCA	TCGA-A1-A0SI	YLPM1	SNP	Missense_Mutation	14	75285000	G	T	33	97
BRCA	TCGA-A1-A0SI	DLST	SNP	Missense_Mutation	14	75355833	G	A	33	78
BRCA	TCGA-A1-A0SI	DLST	SNP	Missense_Mutation	14	75356620	G	A	33	100
BRCA	TCGA-A1-A0SI	NIPA1	SNP	Missense_Mutation	15	23052645	G	A	33	97
BRCA	TCGA-A1-A0SI	HERC2	SNP	Silent	15	28408363	C	T	29	51
BRCA	TCGA-A1-A0SI	HERC2	SNP	Nonsense_Mutation	15	28474383	G	A	37	64
BRCA	TCGA-A1-A0SI	CCNDBP1	SNP	Missense_Mutation	15	43486649	G	A	45	76
BRCA	TCGA-A1-A0SI	CCPG1	SNP	Missense_Mutation	15	55669182	G	C	33	63
BRCA	TCGA-A1-A0SI	ACAN	SNP	Missense_Mutation	15	89400566	G	C	45	61
BRCA	TCGA-A1-A0SI	CDH16	SNP	Missense_Mutation	16	66947420	C	G	32	65
BRCA	TCGA-A1-A0SI	ESRP2	SNP	Missense_Mutation	16	68265592	C	G	29	62
BRCA	TCGA-A1-A0SI	ZFHX3	SNP	Silent	16	72831445	C	T	30	68
BRCA	TCGA-A1-A0SI	ABAT	SNP	Silent	16	8857982	G	A	33	49
BRCA	TCGA-A1-A0SI	SLFN13	SNP	Nonsense_Mutation	17	33768152	G	C	45	48
BRCA	TCGA-A1-A0SI	TUBG2	SNP	Silent	17	40817562	C	T	32	60
BRCA	TCGA-A1-A0SI	PLEKHH3	SNP	Splice_Site	17	40826429	T	C	55	58
BRCA	TCGA-A1-A0SI	BRCA1	SNP	Missense_Mutation	17	41276089	C	G	29	53
BRCA	TCGA-A1-A0SI	C17orf104	SNP	Silent	17	42739711	G	A	33	74
BRCA	TCGA-A1-A0SI	NFE2L1	SNP	Missense_Mutation	17	46136365	C	G	29	99
BRCA	TCGA-A1-A0SI	ABCA8	SNP	Missense_Mutation	17	66902212	C	G	32	87
BRCA	TCGA-A1-A0SI	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-A1-A0SI	CANT1	SNP	Missense_Mutation	17	76991123	G	A	34	64
BRCA	TCGA-A1-A0SI	FASN	SNP	Silent	17	80049393	G	A	40	40
BRCA	TCGA-A1-A0SI	PPAN-P2RY11	SNP	Missense_Mutation	19	10217225	G	C	37	93
BRCA	TCGA-A1-A0SI	MAN2B1	SNP	Nonsense_Mutation	19	12760743	C	A	30	80
BRCA	TCGA-A1-A0SI	FAM129C	SNP	Missense_Mutation	19	17654376	G	A	37	49
BRCA	TCGA-A1-A0SI	UNC13A	SNP	Silent	19	17722612	G	A	45	61
BRCA	TCGA-A1-A0SI	S1PR4	SNP	Silent	19	3179900	G	A	41	68
BRCA	TCGA-A1-A0SI	APLP1	SNP	Missense_Mutation	19	36362821	G	A	33	83
BRCA	TCGA-A1-A0SI	ZNF345	SNP	Missense_Mutation	19	37368402	C	T	29	91
BRCA	TCGA-A1-A0SI	AKT2	SNP	Silent	19	40742257	G	C	45	57
BRCA	TCGA-A1-A0SI	ZNF227	SNP	Silent	19	44740536	G	A	33	59
BRCA	TCGA-A1-A0SI	KLK8	SNP	Missense_Mutation	19	51499359	G	A	39	59
BRCA	TCGA-A1-A0SI	SIGLEC6	SNP	Missense_Mutation	19	52034562	G	C	41	53
BRCA	TCGA-A1-A0SI	ZNF701	SNP	Missense_Mutation	19	53079190	G	A	41	69
BRCA	TCGA-A1-A0SI	ZNF419	SNP	Missense_Mutation	19	58005018	C	G	29	86
BRCA	TCGA-A1-A0SI	ZNF154	SNP	Silent	19	58213789	G	A	45	51
BRCA	TCGA-A1-A0SI	RGPD4	SNP	Missense_Mutation	2	108455374	G	C	33	53
BRCA	TCGA-A1-A0SI	DPP10	SNP	Splice_Site	2	116101489	G	C	44	79
BRCA	TCGA-A1-A0SI	SMPD4	SNP	Silent	2	130910973	C	T	24	55
BRCA	TCGA-A1-A0SI	SCN3A	SNP	Missense_Mutation	2	165947193	G	C	33	100
BRCA	TCGA-A1-A0SI	DNAH7	SNP	Silent	2	196737067	G	T	41	50
BRCA	TCGA-A1-A0SI	OBSL1	SNP	Missense_Mutation	2	220430106	C	A	24	58
BRCA	TCGA-A1-A0SI	EPHA4	SNP	Missense_Mutation	2	222301283	G	A	37	72
BRCA	TCGA-A1-A0SI	SCG2	SNP	Missense_Mutation	2	224462236	G	C	33	52
BRCA	TCGA-A1-A0SI	CLEC4F	SNP	Missense_Mutation	2	71043268	C	A	32	71
BRCA	TCGA-A1-A0SI	CD207	SNP	Missense_Mutation	2	71060130	G	C	33	51
BRCA	TCGA-A1-A0SI	TACR1	SNP	Missense_Mutation	2	75425872	C	T	29	97
BRCA	TCGA-A1-A0SI	KIDINS220	SNP	Missense_Mutation	2	8933973	G	T	45	99
BRCA	TCGA-A1-A0SI	FAHD2B	SNP	Nonsense_Mutation	2	97757395	G	A	45	61
BRCA	TCGA-A1-A0SI	PLCG1	SNP	Silent	20	39791131	C	T	29	60
BRCA	TCGA-A1-A0SI	PTPRT	SNP	Missense_Mutation	20	40790028	C	G	32	74
BRCA	TCGA-A1-A0SI	OCSTAMP	SNP	Silent	20	45170399	C	T	23	30
BRCA	TCGA-A1-A0SI	DPM1	SNP	Missense_Mutation	20	49552777	C	G	32	62
BRCA	TCGA-A1-A0SI	NRIP1	SNP	Missense_Mutation	21	16340055	G	C	45	56
BRCA	TCGA-A1-A0SI	PIK3IP1	SNP	Missense_Mutation	22	31679123	G	A	43	50
BRCA	TCGA-A1-A0SI	TUBGCP6	SNP	Missense_Mutation	22	50659412	G	C	41	50
BRCA	TCGA-A1-A0SI	RBM41	SNP	Nonsense_Mutation	23	106332067	C	A	29	76
BRCA	TCGA-A1-A0SI	GUCY2F	SNP	Silent	23	108684643	G	C	33	41
BRCA	TCGA-A1-A0SI	GRIA3	SNP	Missense_Mutation	23	122528948	G	A	41	93
BRCA	TCGA-A1-A0SI	PLXNA3	SNP	Missense_Mutation	23	153698349	G	C	45	95
BRCA	TCGA-A1-A0SI	PTCHD1	DNP	Missense_Mutation	23	23397742	GG	AT	35	77
BRCA	TCGA-A1-A0SI	DMD	SNP	Missense_Mutation	23	32717249	G	C	45	69
BRCA	TCGA-A1-A0SI	KDM6A	SNP	Silent	23	44921975	C	G	32	62
BRCA	TCGA-A1-A0SI	ZNF673	SNP	Missense_Mutation	23	46322225	G	C	41	69
BRCA	TCGA-A1-A0SI	FAM120C	SNP	Missense_Mutation	23	54160448	C	G	29	57
BRCA	TCGA-A1-A0SI	WNK3	SNP	Missense_Mutation	23	54263720	C	T	29	62
BRCA	TCGA-A1-A0SI	TEX11	SNP	Nonsense_Mutation	23	69772023	C	A	32	84
BRCA	TCGA-A1-A0SI	STS	SNP	Silent	23	7252144	G	A	33	38
BRCA	TCGA-A1-A0SI	HHLA2	SNP	Missense_Mutation	3	108076828	C	G	32	44
BRCA	TCGA-A1-A0SI	DPPA4	SNP	Missense_Mutation	3	109052730	G	A	45	47
BRCA	TCGA-A1-A0SI	SIDT1	SNP	Nonsense_Mutation	3	113323818	C	T	29	100
BRCA	TCGA-A1-A0SI	ARHGAP31	SNP	Missense_Mutation	3	119133900	G	C	33	72
BRCA	TCGA-A1-A0SI	UMPS	SNP	Silent	3	124449396	C	T	31	57
BRCA	TCGA-A1-A0SI	ACPP	SNP	Missense_Mutation	3	132036383	G	T	37	30
BRCA	TCGA-A1-A0SI	XPC	SNP	Missense_Mutation	3	14197884	C	T	31	66
BRCA	TCGA-A1-A0SI	CP	SNP	Silent	3	148896325	G	A	33	75
BRCA	TCGA-A1-A0SI	IGSF10	SNP	Silent	3	151163473	C	T	29	54
BRCA	TCGA-A1-A0SI	PIK3CA	SNP	Missense_Mutation	3	178938934	G	A	45	98
BRCA	TCGA-A1-A0SI	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A1-A0SI	CCDC39	SNP	Silent	3	180379751	A	G	4	58
BRCA	TCGA-A1-A0SI	HTR3C	SNP	Silent	3	183777385	C	G	29	52
BRCA	TCGA-A1-A0SI	PYDC2	SNP	Silent	3	191179038	G	A	45	55
BRCA	TCGA-A1-A0SI	CCRL2	SNP	Missense_Mutation	3	46449655	G	A	45	46
BRCA	TCGA-A1-A0SI	DHX30	SNP	Splice_Site	3	47859511	G	T	33	78
BRCA	TCGA-A1-A0SI	RBM6	SNP	Missense_Mutation	3	50036917	G	C	33	96
BRCA	TCGA-A1-A0SI	RBM5	SNP	Missense_Mutation	3	50151418	G	C	45	50
BRCA	TCGA-A1-A0SI	GRM2	SNP	Missense_Mutation	3	51746802	G	A	37	66
BRCA	TCGA-A1-A0SI	DNAH1	SNP	Silent	3	52383095	C	G	29	54
BRCA	TCGA-A1-A0SI	STAB1	SNP	Missense_Mutation	3	52550384	C	G	26	49
BRCA	TCGA-A1-A0SI	GYPE	SNP	Missense_Mutation	4	144801602	G	C	33	51
BRCA	TCGA-A1-A0SI	SNCAIP	SNP	Silent	5	121786699	G	A	45	59
BRCA	TCGA-A1-A0SI	ODZ2	SNP	Silent	5	167675132	G	A	33	75
BRCA	TCGA-A1-A0SI	TRIM41	SNP	Missense_Mutation	5	180651357	A	G	8	65
BRCA	TCGA-A1-A0SI	RAI14	SNP	Missense_Mutation	5	34824468	C	G	32	65
BRCA	TCGA-A1-A0SI	GAPT	SNP	Missense_Mutation	5	57790418	C	G	32	48
BRCA	TCGA-A1-A0SI	ZNF366	SNP	Missense_Mutation	5	71756672	C	T	31	67
BRCA	TCGA-A1-A0SI	MYB	DEL	In_Frame_Del	6	135511005	AAG	-	1	93
BRCA	TCGA-A1-A0SI	SYNE1	SNP	Missense_Mutation	6	152451876	G	A	33	83
BRCA	TCGA-A1-A0SI	SLC39A7	SNP	Missense_Mutation	6	33169176	G	A	45	71
BRCA	TCGA-A1-A0SI	KIAA1009	SNP	Missense_Mutation	6	84884604	C	G	32	87
BRCA	TCGA-A1-A0SI	AGFG2	SNP	Missense_Mutation	7	100146506	G	A	45	98
BRCA	TCGA-A1-A0SI	ARMC10	SNP	Silent	7	102732968	G	A	45	59
BRCA	TCGA-A1-A0SI	RINT1	SNP	Nonsense_Mutation	7	105205803	C	T	19	50
BRCA	TCGA-A1-A0SI	MLL3	SNP	Missense_Mutation	7	151960110	C	G	30	98
BRCA	TCGA-A1-A0SI	ACTR3B	SNP	Missense_Mutation	7	152497655	C	G	28	94
BRCA	TCGA-A1-A0SI	RNF32	SNP	Silent	7	156450902	G	A	45	60
BRCA	TCGA-A1-A0SI	URGCP	SNP	Missense_Mutation	7	43916676	G	C	41	60
BRCA	TCGA-A1-A0SI	URGCP	SNP	Nonsense_Mutation	7	43916993	G	C	45	54
BRCA	TCGA-A1-A0SI	BAZ1B	SNP	Missense_Mutation	7	72877401	G	C	33	73
BRCA	TCGA-A1-A0SI	PTPN12	SNP	Missense_Mutation	7	77240143	C	G	32	93
BRCA	TCGA-A1-A0SI	CYP3A4	SNP	Silent	7	99366074	C	T	29	45
BRCA	TCGA-A1-A0SI	EXOSC4	SNP	Missense_Mutation	8	145133638	G	A	43	79
BRCA	TCGA-A1-A0SI	TEX15	SNP	Missense_Mutation	8	30694361	G	A	35	56
BRCA	TCGA-A1-A0SI	RUNX1T1	SNP	Silent	8	93088269	G	A	45	82
BRCA	TCGA-A1-A0SI	DPY19L4	SNP	Missense_Mutation	8	95738635	C	G	29	53
BRCA	TCGA-A1-A0SI	GTF3C5	SNP	Silent	9	135917590	G	A	33	50
BRCA	TCGA-A1-A0SI	TAF1L	SNP	Missense_Mutation	9	32632175	G	C	45	74
BRCA	TCGA-A1-A0SI	CNTFR	SNP	Silent	9	34552694	G	C	45	51
BRCA	TCGA-A1-A0SI	SPAG8	SNP	Silent	9	35811635	G	A	42	51
BRCA	TCGA-A1-A0SI	MLANA	SNP	Silent	9	5897575	C	T	30	56
BRCA	TCGA-A1-A0SI	AUH	SNP	Missense_Mutation	9	94087618	C	T	28	57
BRCA	TCGA-A1-A0SI	FAM22G	SNP	Missense_Mutation	9	99694157	C	G	32	50
BRCA	TCGA-A1-A0SJ	ADORA3	SNP	Missense_Mutation	1	112029214	C	T	27	44
BRCA	TCGA-A1-A0SJ	SPEN	DEL	Frame_Shift_Del	1	16258909	CCCTGTT	-	22	51
BRCA	TCGA-A1-A0SJ	CHML	DEL	Frame_Shift_Del	1	241798828	G	-	47	47
BRCA	TCGA-A1-A0SJ	BCL9L	SNP	Missense_Mutation	11	118770024	G	A	36	69
BRCA	TCGA-A1-A0SJ	RASSF7	SNP	Missense_Mutation	11	562707	G	C	33	53
BRCA	TCGA-A1-A0SJ	PPFIBP2	SNP	Silent	11	7650734	G	T	41	38
BRCA	TCGA-A1-A0SJ	ASCL3	SNP	Missense_Mutation	11	8959533	G	C	43	67
BRCA	TCGA-A1-A0SJ	GNPTAB	SNP	Missense_Mutation	12	102161847	G	A	45	85
BRCA	TCGA-A1-A0SJ	GJB2	SNP	Missense_Mutation	13	20763283	G	C	37	45
BRCA	TCGA-A1-A0SJ	NFATC4	SNP	Silent	14	24845882	G	A	38	50
BRCA	TCGA-A1-A0SJ	UBAP1L	SNP	Missense_Mutation	15	65385553	C	T	27	52
BRCA	TCGA-A1-A0SJ	CILP	SNP	Missense_Mutation	15	65489601	A	T	9	91
BRCA	TCGA-A1-A0SJ	TNRC6A	DEL	Frame_Shift_Del	16	24807329	ATTT	-	8	53
BRCA	TCGA-A1-A0SJ	ALG1	SNP	Missense_Mutation	16	5132586	C	T	25	94
BRCA	TCGA-A1-A0SJ	NLRC5	SNP	Silent	16	57059665	C	T	30	49
BRCA	TCGA-A1-A0SJ	HAGHL	SNP	Missense_Mutation	16	779103	T	C	63	39
BRCA	TCGA-A1-A0SJ	PSMD11	SNP	Missense_Mutation	17	30771560	G	C	44	78
BRCA	TCGA-A1-A0SJ	SCN4A	SNP	Missense_Mutation	17	62022840	G	C	33	51
BRCA	TCGA-A1-A0SJ	AMZ2	SNP	Missense_Mutation	17	66246548	T	G	56	77
BRCA	TCGA-A1-A0SJ	GRIN2C	SNP	Silent	17	72846850	G	A	48	59
BRCA	TCGA-A1-A0SJ	NOTUM	SNP	Splice_site	17	79914949	C	T	27	93
BRCA	TCGA-A1-A0SJ	NUP62	SNP	Missense_Mutation	19	50412785	C	A	25	45
BRCA	TCGA-A1-A0SJ	ZNF543	SNP	Missense_Mutation	19	57839971	G	A	33	44
BRCA	TCGA-A1-A0SJ	SNAI1	SNP	Missense_Mutation	20	48604526	G	A	39	71
BRCA	TCGA-A1-A0SJ	TH1L	SNP	Missense_Mutation	20	57566094	G	C	33	78
BRCA	TCGA-A1-A0SJ	COL20A1	SNP	Missense_Mutation	20	61939981	C	T	19	94
BRCA	TCGA-A1-A0SJ	SIK1	SNP	Silent	21	44839242	C	T	27	9
BRCA	TCGA-A1-A0SJ	FRMPD3	SNP	Silent	23	106846552	G	A	39	46
BRCA	TCGA-A1-A0SJ	MCTS1	SNP	Missense_Mutation	23	119738713	G	A	42	56
BRCA	TCGA-A1-A0SJ	OFD1	SNP	Nonsense_Mutation	23	13776561	C	T	29	88
BRCA	TCGA-A1-A0SJ	ZBTB11	SNP	Missense_Mutation	3	101378855	A	C	9	61
BRCA	TCGA-A1-A0SJ	HNRPDL	SNP	Missense_Mutation	4	83350497	C	G	28	49
BRCA	TCGA-A1-A0SJ	ODZ2	SNP	Silent	5	167645417	C	T	19	41
BRCA	TCGA-A1-A0SJ	FAF2	SNP	Missense_Mutation	5	175875463	C	A	25	83
BRCA	TCGA-A1-A0SJ	CNR1	SNP	Missense_Mutation	6	88854518	A	G	7	93
BRCA	TCGA-A1-A0SJ	IKZF1	SNP	Missense_Mutation	7	50468114	G	A	38	75
BRCA	TCGA-A1-A0SJ	LRRD1	SNP	Nonsense_Mutation	7	91792659	C	A	29	83
BRCA	TCGA-A1-A0SJ	RANBP6	SNP	Missense_Mutation	9	6012961	T	C	56	55
BRCA	TCGA-A1-A0SK	SEMA6C	SNP	Splice_site	1	151109550	C	A	18	80
BRCA	TCGA-A1-A0SK	RXFP4	SNP	Missense_Mutation	1	155912487	G	T	45	34
BRCA	TCGA-A1-A0SK	RFWD2	SNP	Silent	1	176012391	T	G	54	64
BRCA	TCGA-A1-A0SK		SNP	Silent	1	211381150	G	A	35	66
BRCA	TCGA-A1-A0SK	USH2A	SNP	Missense_Mutation	1	215848217	G	T	44	53
BRCA	TCGA-A1-A0SK	LIN9	SNP	Silent	1	226426717	C	T	24	53
BRCA	TCGA-A1-A0SK	DHDDS	SNP	Silent	1	26784300	G	C	46	54
BRCA	TCGA-A1-A0SK	GMEB1	SNP	Missense_Mutation	1	29016663	A	T	9	67
BRCA	TCGA-A1-A0SK	DMBT1	SNP	Missense_Mutation	10	124390771	G	A	40	40
BRCA	TCGA-A1-A0SK	ACBD5	SNP	Missense_Mutation	10	27520705	A	C	8	91
BRCA	TCGA-A1-A0SK	MYPN	SNP	Silent	10	69881873	C	T	19	43
BRCA	TCGA-A1-A0SK	ARHGAP42	SNP	Missense_Mutation	11	100845328	C	T	18	85
BRCA	TCGA-A1-A0SK	TECTA	SNP	Missense_Mutation	11	121008612	G	C	48	53
BRCA	TCGA-A1-A0SK	AHNAK	SNP	Missense_Mutation	11	62297801	T	C	64	77
BRCA	TCGA-A1-A0SK	ATG2A	SNP	Missense_Mutation	11	64673972	A	C	7	88
BRCA	TCGA-A1-A0SK	GDPD5	SNP	Missense_Mutation	11	75160132	C	T	19	56
BRCA	TCGA-A1-A0SK	ANKRD42	SNP	Missense_Mutation	11	82938872	A	T	16	54
BRCA	TCGA-A1-A0SK	FAT3	SNP	Missense_Mutation	11	92533189	T	A	64	93
BRCA	TCGA-A1-A0SK	DTX1	SNP	Missense_Mutation	12	113515277	C	A	23	88
BRCA	TCGA-A1-A0SK	TROAP	SNP	Silent	12	49717675	T	C	52	53
BRCA	TCGA-A1-A0SK	HNRNPA1	SNP	Missense_Mutation	12	54678053	G	A	39	76
BRCA	TCGA-A1-A0SK	NABP2	DEL	Frame_Shift_Del	12	56619427	G	-	35	92
BRCA	TCGA-A1-A0SK	ARL11	SNP	Missense_Mutation	13	50204651	C	T	27	97
BRCA	TCGA-A1-A0SK	OR5AU1	SNP	Missense_Mutation	14	21623196	G	C	48	64
BRCA	TCGA-A1-A0SK	CHRNB4	SNP	Missense_Mutation	15	78921983	C	T	19	52
BRCA	TCGA-A1-A0SK	GTF3C1	DEL	Frame_Shift_Del	16	27480677	ACCACAATGC	-	10	86
BRCA	TCGA-A1-A0SK	CPNE7	SNP	Splice_Site	16	89644130	G	A	44	92
BRCA	TCGA-A1-A0SK	OR1D5	SNP	Missense_Mutation	17	2966828	C	T	23	26
BRCA	TCGA-A1-A0SK	CCL23	SNP	Missense_Mutation	17	34340326	G	A	40	49
BRCA	TCGA-A1-A0SK	SHPK	SNP	Missense_Mutation	17	3518763	G	C	41	82
BRCA	TCGA-A1-A0SK	BRCA1	SNP	Silent	17	41245985	T	C	55	51
BRCA	TCGA-A1-A0SK	CAMTA2	SNP	Missense_Mutation	17	4883751	G	A	41	74
BRCA	TCGA-A1-A0SK	TP53	SNP	Missense_Mutation	17	7578532	A	T	8	89
BRCA	TCGA-A1-A0SK	LAMA3	SNP	Silent	18	21534511	G	A	47	85
BRCA	TCGA-A1-A0SK	COPE	SNP	Missense_Mutation	19	19030117	C	G	22	84
BRCA	TCGA-A1-A0SK	PEPD	SNP	Silent	19	33892709	G	A	40	47
BRCA	TCGA-A1-A0SK	LSR	SNP	Missense_Mutation	19	35749935	A	G	2	71
BRCA	TCGA-A1-A0SK	SERTAD3	SNP	Missense_Mutation	19	40947651	G	C	45	87
BRCA	TCGA-A1-A0SK	ZNF234	SNP	Missense_Mutation	19	44660912	C	G	20	37
BRCA	TCGA-A1-A0SK	TPRX1	SNP	Missense_Mutation	19	48305574	A	G	11	31
BRCA	TCGA-A1-A0SK	TPRX1	SNP	Missense_Mutation	19	48305634	A	G	11	32
BRCA	TCGA-A1-A0SK	NPAS2	SNP	Missense_Mutation	2	101541639	C	T	31	81
BRCA	TCGA-A1-A0SK	RFX8	SNP	Silent	2	102014145	T	A	55	32
BRCA	TCGA-A1-A0SK	BUB1	SNP	Silent	2	111419365	C	T	27	51
BRCA	TCGA-A1-A0SK	SCN9A	SNP	Silent	2	167159748	C	T	29	59
BRCA	TCGA-A1-A0SK	TRAF3IP1	SNP	Missense_Mutation	2	239264716	G	A	41	77
BRCA	TCGA-A1-A0SK	VIT	DEL	In_Frame_Del	2	37010495	AAG	-	1	73
BRCA	TCGA-A1-A0SK	LAMA5	SNP	Missense_Mutation	20	60893617	C	G	31	52
BRCA	TCGA-A1-A0SK	CECR2	SNP	Silent	22	18022211	C	T	18	43
BRCA	TCGA-A1-A0SK	LARGE	SNP	Missense_Mutation	22	34157362	G	T	37	54
BRCA	TCGA-A1-A0SK	RHOXF2B	SNP	Missense_Mutation	23	119210984	G	T	46	44
BRCA	TCGA-A1-A0SK	SLITRK4	SNP	Nonsense_Mutation	23	142716453	G	C	44	95
BRCA	TCGA-A1-A0SK	SLITRK4	SNP	Missense_Mutation	23	142718044	G	A	48	72
BRCA	TCGA-A1-A0SK	IDS	SNP	Missense_Mutation	23	148586645	C	T	31	56
BRCA	TCGA-A1-A0SK	SSR4	SNP	Missense_Mutation	23	153060173	G	T	42	60
BRCA	TCGA-A1-A0SK	PJA1	SNP	Missense_Mutation	23	68383057	C	A	17	58
BRCA	TCGA-A1-A0SK	TEX11	SNP	Missense_Mutation	23	69749698	C	T	28	32
BRCA	TCGA-A1-A0SK	SHROOM2	SNP	Silent	23	9914857	C	T	20	72
BRCA	TCGA-A1-A0SK	YIPF7	SNP	Missense_Mutation	4	44626655	C	T	18	71
BRCA	TCGA-A1-A0SK	UGT2B15	SNP	Nonsense_Mutation	4	69533861	C	T	21	84
BRCA	TCGA-A1-A0SK	SCD5	SNP	Missense_Mutation	4	83719603	C	A	23	58
BRCA	TCGA-A1-A0SK	LIN28B	SNP	Silent	6	105526463	A	T	8	49
BRCA	TCGA-A1-A0SK	COL21A1	SNP	Silent	6	55940289	G	T	43	39
BRCA	TCGA-A1-A0SK	ZNF777	SNP	Silent	7	149128876	C	T	23	55
BRCA	TCGA-A1-A0SK	ASB10	SNP	Missense_Mutation	7	150878405	T	C	50	87
BRCA	TCGA-A1-A0SK	INMT	SNP	Silent	7	30793498	G	A	39	18
BRCA	TCGA-A1-A0SK	TG	SNP	Silent	8	133912567	C	T	31	53
BRCA	TCGA-A1-A0SK	FLJ43860	SNP	Missense_Mutation	8	142459700	C	T	19	51
BRCA	TCGA-A1-A0SK	LOC100130274	SNP	Missense_Mutation	8	144790102	C	T	27	54
BRCA	TCGA-A1-A0SK	PLEC	SNP	Silent	8	145007427	G	A	33	49
BRCA	TCGA-A1-A0SK	UNC5D	SNP	Missense_Mutation	8	35584005	G	T	48	62
BRCA	TCGA-A1-A0SM	ACP6	SNP	Missense_Mutation	1	147120061	T	C	49	51
BRCA	TCGA-A1-A0SM	DCST1	SNP	Nonsense_Mutation	1	155020578	A	T	9	73
BRCA	TCGA-A1-A0SM	ATP1A4	SNP	Missense_Mutation	1	160144388	C	T	17	92
BRCA	TCGA-A1-A0SM	PDZD8	SNP	Silent	10	119134106	G	T	33	50
BRCA	TCGA-A1-A0SM	ZFAND4	SNP	Missense_Mutation	10	46135376	T	A	50	86
BRCA	TCGA-A1-A0SM	RRP12	SNP	Silent	10	99130258	G	A	37	57
BRCA	TCGA-A1-A0SM	ODZ4	SNP	Missense_Mutation	11	78780799	A	T	6	87
BRCA	TCGA-A1-A0SM	CLEC12A	SNP	Silent	12	10134654	T	C	52	54
BRCA	TCGA-A1-A0SM	GOLGA3	SNP	Missense_Mutation	12	133393258	C	A	29	74
BRCA	TCGA-A1-A0SM	SCN8A	SNP	Silent	12	52099215	C	T	23	47
BRCA	TCGA-A1-A0SM	ESYT1	SNP	Missense_Mutation	12	56532266	C	T	27	65
BRCA	TCGA-A1-A0SM	HEATR4	SNP	Missense_Mutation	14	73989691	G	A	39	51
BRCA	TCGA-A1-A0SM		SNP	Silent	16	16468278	C	T	27	49
BRCA	TCGA-A1-A0SM	ZNF229	SNP	Missense_Mutation	19	44936532	T	G	54	52
BRCA	TCGA-A1-A0SM	TBC1D8	SNP	Nonsense_Mutation	2	101648789	C	T	21	99
BRCA	TCGA-A1-A0SM	ID2	SNP	Missense_Mutation	2	8822549	T	C	52	89
BRCA	TCGA-A1-A0SM	SMARCA1	DEL	Frame_Shift_Del	23	128614761	G	-	45	97
BRCA	TCGA-A1-A0SM	CDY2A	SNP	Nonsense_Mutation	24	20138094	C	T	17	48
BRCA	TCGA-A1-A0SM	CP	SNP	Silent	3	148896320	A	G	9	63
BRCA	TCGA-A1-A0SM	LPP	SNP	Missense_Mutation	3	188584034	G	A	39	83
BRCA	TCGA-A1-A0SM	AIM1	SNP	Silent	6	106989161	T	C	64	35
BRCA	TCGA-A1-A0SM	TCTE1	SNP	Missense_Mutation	6	44250253	C	T	27	78
BRCA	TCGA-A1-A0SM	ZAN	SNP	Silent	7	100349612	C	T	30	32
BRCA	TCGA-A1-A0SM	STEAP2	DEL	In_Frame_Del	7	89854877	GCC	-	46	76
BRCA	TCGA-A1-A0SM	TSNARE1	SNP	Missense_Mutation	8	143436021	G	A	37	59
BRCA	TCGA-A1-A0SM	CSMD1	SNP	Silent	8	3076793	G	A	37	49
BRCA	TCGA-A1-A0SM	IKBKB	SNP	Missense_Mutation	8	42179428	G	T	35	73
BRCA	TCGA-A1-A0SN	WDR47	SNP	Missense_Mutation	1	109538271	C	T	28	94
BRCA	TCGA-A1-A0SN	NPR1	SNP	Missense_Mutation	1	153659695	A	T	4	66
BRCA	TCGA-A1-A0SN	DNM3	SNP	Missense_Mutation	1	172011231	G	A	47	99
BRCA	TCGA-A1-A0SN	C4BPA	SNP	Missense_Mutation	1	207317171	C	T	31	49
BRCA	TCGA-A1-A0SN	KIF26B	SNP	Silent	1	245583003	C	T	27	49
BRCA	TCGA-A1-A0SN	PLCE1	SNP	Missense_Mutation	10	96066253	G	C	43	100
BRCA	TCGA-A1-A0SN	MUC5B	SNP	Missense_Mutation	11	1264225	C	T	22	16
BRCA	TCGA-A1-A0SN	APLP2	SNP	Silent	11	129993589	C	T	27	60
BRCA	TCGA-A1-A0SN	OR5T3	SNP	Missense_Mutation	11	56020439	T	C	52	68
BRCA	TCGA-A1-A0SN	KNTC1	SNP	Silent	12	123058840	T	C	49	52
BRCA	TCGA-A1-A0SN	CLECL1	SNP	Missense_Mutation	12	9885586	C	T	23	49
BRCA	TCGA-A1-A0SN	OR4K14	SNP	Silent	14	20482894	T	C	50	47
BRCA	TCGA-A1-A0SN	HEATR4	DEL	Frame_Shift_Del	14	73978799	AGGTCTCCCA	-	7	76
BRCA	TCGA-A1-A0SN	NGB	SNP	Silent	14	77735657	C	G	21	72
BRCA	TCGA-A1-A0SN	MGA	SNP	Missense_Mutation	15	42028642	C	T	31	65
BRCA	TCGA-A1-A0SN	TICRR	SNP	Missense_Mutation	15	90143862	A	G	1	81
BRCA	TCGA-A1-A0SN	PHKG2	SNP	Missense_Mutation	16	30760196	G	A	33	81
BRCA	TCGA-A1-A0SN	NCOR1	SNP	Missense_Mutation	17	16029439	C	G	32	77
BRCA	TCGA-A1-A0SN	NEK8	SNP	Missense_Mutation	17	27061083	G	C	33	96
BRCA	TCGA-A1-A0SN	CDC6	SNP	Missense_Mutation	17	38457154	G	C	45	69
BRCA	TCGA-A1-A0SN	CDC6	SNP	Missense_Mutation	17	38458209	G	C	33	92
BRCA	TCGA-A1-A0SN	KRT24	SNP	Silent	17	38857431	G	A	45	49
BRCA	TCGA-A1-A0SN	BPTF	SNP	Silent	17	65850252	T	C	64	54
BRCA	TCGA-A1-A0SN	CABYR	SNP	Missense_Mutation	18	21735836	C	T	29	81
BRCA	TCGA-A1-A0SN	EPS15L1	SNP	Missense_Mutation	19	16528799	G	C	39	66
BRCA	TCGA-A1-A0SN	ZNF682	SNP	Missense_Mutation	19	20116956	C	T	27	38
BRCA	TCGA-A1-A0SN	ZNF677	SNP	Missense_Mutation	19	53741328	C	T	29	56
BRCA	TCGA-A1-A0SN	DNAAF3	SNP	Missense_Mutation	19	55677342	C	G	26	61
BRCA	TCGA-A1-A0SN	DZANK1	SNP	Missense_Mutation	20	18365188	T	G	56	68
BRCA	TCGA-A1-A0SN	RBM39	SNP	Silent	20	34312573	G	A	37	40
BRCA	TCGA-A1-A0SN	ADAM33	SNP	Missense_Mutation	20	3649953	G	T	44	38
BRCA	TCGA-A1-A0SN	CDS2	SNP	Silent	20	5165585	C	A	29	56
BRCA	TCGA-A1-A0SN	ELFN2	SNP	Missense_Mutation	22	37770941	G	A	39	81
BRCA	TCGA-A1-A0SN	IRS4	SNP	Silent	23	107978147	G	T	46	64
BRCA	TCGA-A1-A0SN	HS6ST2	SNP	Missense_Mutation	23	131762534	C	T	31	57
BRCA	TCGA-A1-A0SN	SPANXN2	SNP	Missense_Mutation	23	142795593	C	G	30	48
BRCA	TCGA-A1-A0SN	IQSEC2	SNP	Missense_Mutation	23	53265517	G	C	44	62
BRCA	TCGA-A1-A0SN	ACRC	SNP	Missense_Mutation	23	70832365	G	C	33	53
BRCA	TCGA-A1-A0SN	ARHGAP31	SNP	Missense_Mutation	3	119133124	C	G	24	65
BRCA	TCGA-A1-A0SN	DNAH12	SNP	Silent	3	57419477	A	G	8	53
BRCA	TCGA-A1-A0SN	DNAH5	SNP	Missense_Mutation	5	13865914	C	A	32	59
BRCA	TCGA-A1-A0SN	MCHR2	SNP	Missense_Mutation	6	100404004	G	C	33	55
BRCA	TCGA-A1-A0SN	TRIM39	SNP	Missense_Mutation	6	30298612	C	T	31	65
BRCA	TCGA-A1-A0SN	ATAT1	SNP	Splice_Site	6	30613843	G	C	35	75
BRCA	TCGA-A1-A0SN	DPCR1	SNP	Missense_Mutation	6	30917380	C	T	24	75
BRCA	TCGA-A1-A0SN	SPAM1	SNP	Nonsense_Mutation	7	123594426	C	T	29	37
BRCA	TCGA-A1-A0SN	GRM8	SNP	Missense_Mutation	7	126544645	T	G	61	90
BRCA	TCGA-A1-A0SN	AKAP9	DEL	Frame_Shift_Del	7	91631496	AG	-	15	58
BRCA	TCGA-A1-A0SN	XKR4	SNP	Missense_Mutation	8	56436404	C	T	21	88
BRCA	TCGA-A1-A0SO	EPS8L3	SNP	Missense_Mutation	1	110301155	G	T	35	61
BRCA	TCGA-A1-A0SO	AP4B1	SNP	Silent	1	114447319	C	T	24	62
BRCA	TCGA-A1-A0SO	HIPK1	SNP	Silent	1	114514630	C	T	32	57
BRCA	TCGA-A1-A0SO	SYCP1	SNP	Missense_Mutation	1	115487026	C	G	29	60
BRCA	TCGA-A1-A0SO	CASQ2	SNP	Missense_Mutation	1	116245613	C	T	19	56
BRCA	TCGA-A1-A0SO	VPS13D	SNP	Missense_Mutation	1	12343711	T	C	52	53
BRCA	TCGA-A1-A0SO	HNRNPCL1	SNP	Missense_Mutation	1	12907909	C	G	24	53
BRCA	TCGA-A1-A0SO	BCL9	SNP	Missense_Mutation	1	147090653	C	T	23	78
BRCA	TCGA-A1-A0SO	SETDB1	SNP	Missense_Mutation	1	150916412	G	T	45	96
BRCA	TCGA-A1-A0SO	DARS2	SNP	Missense_Mutation	1	173808592	G	C	33	57
BRCA	TCGA-A1-A0SO	C1orf222	DEL	Frame_Shift_Del	1	1895246	TCGTGTAGGTGGTG	-	50	60
BRCA	TCGA-A1-A0SO	ZBTB41	SNP	Missense_Mutation	1	197128698	G	C	44	47
BRCA	TCGA-A1-A0SO	IGFN1	SNP	Missense_Mutation	1	201184703	T	A	55	67
BRCA	TCGA-A1-A0SO	PM20D1	SNP	Missense_Mutation	1	205797837	C	A	28	56
BRCA	TCGA-A1-A0SO	PM20D1	SNP	Silent	1	205814011	G	A	35	50
BRCA	TCGA-A1-A0SO	BROX	DEL	Frame_Shift_Del	1	222903439	TTCAGGACATCTG	-	56	43
BRCA	TCGA-A1-A0SO	BROX	DEL	Frame_Shift_Del	1	222903458	A	-	15	51
BRCA	TCGA-A1-A0SO	OBSCN	SNP	Silent	1	228561695	C	T	32	59
BRCA	TCGA-A1-A0SO	CEP170	SNP	Missense_Mutation	1	243328748	G	T	34	81
BRCA	TCGA-A1-A0SO	SRSF4	SNP	Missense_Mutation	1	29475392	C	T	22	72
BRCA	TCGA-A1-A0SO	HCRTR1	SNP	Missense_Mutation	1	32086466	T	A	59	85
BRCA	TCGA-A1-A0SO	HPCA	SNP	Silent	1	33359202	C	A	32	82
BRCA	TCGA-A1-A0SO	SFPQ	DEL	Frame_Shift_Del	1	35653669	TT	-	56	57
BRCA	TCGA-A1-A0SO	NCDN	SNP	Missense_Mutation	1	36031100	C	G	22	64
BRCA	TCGA-A1-A0SO	EIF2C4	SNP	Missense_Mutation	1	36307019	C	T	19	100
BRCA	TCGA-A1-A0SO	MACF1	DEL	Frame_Shift_Del	1	39753221	TA	-	57	89
BRCA	TCGA-A1-A0SO	LRRC42	SNP	Missense_Mutation	1	54433480	C	G	26	53
BRCA	TCGA-A1-A0SO	ATG4C	SNP	Splice_site	1	63300523	G	A	35	97
BRCA	TCGA-A1-A0SO	GIPC2	DEL	Splice_Site	1	78546542	AAGGT	-	1	91
BRCA	TCGA-A1-A0SO	KIAA1107	SNP	Nonsense_Mutation	1	92634546	C	T	21	62
BRCA	TCGA-A1-A0SO	SPAG6	SNP	Missense_Mutation	10	22675859	A	G	12	79
BRCA	TCGA-A1-A0SO	GPR158	SNP	Missense_Mutation	10	25755604	C	A	24	65
BRCA	TCGA-A1-A0SO	PCDH15	SNP	Splice_site	10	55826517	T	A	56	74
BRCA	TCGA-A1-A0SO	MYPN	SNP	Missense_Mutation	10	69881526	T	A	64	44
BRCA	TCGA-A1-A0SO	DLG5	SNP	Missense_Mutation	10	79589152	C	G	18	68
BRCA	TCGA-A1-A0SO	OPN4	SNP	Missense_Mutation	10	88425489	G	T	34	57
BRCA	TCGA-A1-A0SO	ALKBH8	DEL	Frame_Shift_Del	11	107424599	CAAT	-	21	88
BRCA	TCGA-A1-A0SO	C11orf88	SNP	Missense_Mutation	11	111385523	C	A	22	50
BRCA	TCGA-A1-A0SO	FAM55B	SNP	Missense_Mutation	11	114568988	C	A	18	51
BRCA	TCGA-A1-A0SO	MUC5B	SNP	Missense_Mutation	11	1262629	T	G	59	72
BRCA	TCGA-A1-A0SO	OSBPL5	SNP	Silent	11	3111849	T	A	50	50
BRCA	TCGA-A1-A0SO	KIAA1549L	SNP	Missense_Mutation	11	33667568	A	T	7	89
BRCA	TCGA-A1-A0SO	OR51F2	SNP	Missense_Mutation	11	4842915	G	T	44	70
BRCA	TCGA-A1-A0SO	TNKS1BP1	SNP	Missense_Mutation	11	57080433	C	A	22	53
BRCA	TCGA-A1-A0SO	ZDHHC5	SNP	Nonsense_Mutation	11	57466569	C	G	29	91
BRCA	TCGA-A1-A0SO	OR5AN1	SNP	Missense_Mutation	11	59131936	C	T	20	43
BRCA	TCGA-A1-A0SO	POLD4	SNP	Missense_Mutation	11	67119477	A	G	15	67
BRCA	TCGA-A1-A0SO	LRP5	SNP	Missense_Mutation	11	68181253	G	A	34	85
BRCA	TCGA-A1-A0SO	PPFIA1	SNP	Missense_Mutation	11	70118391	A	C	7	59
BRCA	TCGA-A1-A0SO	HEPHL1	SNP	Missense_Mutation	11	93819195	G	T	43	50
BRCA	TCGA-A1-A0SO	CLIP1	SNP	Silent	12	122825432	G	C	33	52
BRCA	TCGA-A1-A0SO	SBNO1	SNP	Missense_Mutation	12	123794118	C	G	30	98
BRCA	TCGA-A1-A0SO	EIF2B1	SNP	Missense_Mutation	12	124114778	T	C	54	76
BRCA	TCGA-A1-A0SO	NCOR2	SNP	Missense_Mutation	12	124824901	C	A	28	50
BRCA	TCGA-A1-A0SO	ZNF268	SNP	Missense_Mutation	12	133779830	A	G	3	55
BRCA	TCGA-A1-A0SO	KCNA5	SNP	Missense_Mutation	12	5154349	T	A	55	89
BRCA	TCGA-A1-A0SO	RDH5	DEL	Frame_Shift_Del	12	56118211	GCTACAGCCCAGGTTGGGATGCCAAGCT	-	38	94
BRCA	TCGA-A1-A0SO	CD4	SNP	Missense_Mutation	12	6925542	C	A	29	63
BRCA	TCGA-A1-A0SO	TSPAN8	SNP	Missense_Mutation	12	71526567	C	A	21	83
BRCA	TCGA-A1-A0SO	ZDHHC17	SNP	Missense_Mutation	12	77236736	T	A	54	92
BRCA	TCGA-A1-A0SO	NAV3	SNP	Silent	12	78604291	C	A	22	49
BRCA	TCGA-A1-A0SO	A2ML1	SNP	Missense_Mutation	12	8994108	G	C	41	78
BRCA	TCGA-A1-A0SO	FRY	DEL	Frame_Shift_Del	13	32818202	TGTGCAGCAGCCCCTGC	-	59	43
BRCA	TCGA-A1-A0SO	LOC220429	SNP	Missense_Mutation	13	50465611	G	A	45	56
BRCA	TCGA-A1-A0SO	MYCBP2	SNP	Missense_Mutation	13	77672956	T	A	56	89
BRCA	TCGA-A1-A0SO	RNF113B	SNP	Silent	13	98828564	C	T	31	40
BRCA	TCGA-A1-A0SO	TNFAIP2	SNP	Missense_Mutation	14	103601617	C	T	27	50
BRCA	TCGA-A1-A0SO	CDH24	SNP	Missense_Mutation	14	23523514	C	G	30	96
BRCA	TCGA-A1-A0SO	MYH7	SNP	Silent	14	23898233	G	A	43	50
BRCA	TCGA-A1-A0SO	RNF31	SNP	Missense_Mutation	14	24617315	C	A	19	94
BRCA	TCGA-A1-A0SO	SFTA3	SNP	Splice_site	14	36960496	C	A	18	50
BRCA	TCGA-A1-A0SO	PLEK2	DEL	Frame_Shift_Del	14	67854072	TCCACTCGGC	-	50	86
BRCA	TCGA-A1-A0SO	ZNF410	SNP	Missense_Mutation	14	74371680	C	T	17	84
BRCA	TCGA-A1-A0SO	TMED8	SNP	Missense_Mutation	14	77808211	T	C	58	93
BRCA	TCGA-A1-A0SO	ADAMTS17	SNP	Missense_Mutation	15	100516261	G	A	41	96
BRCA	TCGA-A1-A0SO	CHRM5	DEL	Frame_Shift_Del	15	34355438	G	-	47	100
BRCA	TCGA-A1-A0SO	DUOX1	SNP	Silent	15	45453997	G	A	46	54
BRCA	TCGA-A1-A0SO	SCG3	SNP	Missense_Mutation	15	51984365	G	T	42	61
BRCA	TCGA-A1-A0SO	SNX1	SNP	Missense_Mutation	15	64428539	G	C	39	67
BRCA	TCGA-A1-A0SO	NOX5	SNP	Silent	15	69328237	C	T	32	53
BRCA	TCGA-A1-A0SO	HCN4	SNP	Silent	15	73624616	G	A	40	51
BRCA	TCGA-A1-A0SO	STRA6	SNP	Missense_Mutation	15	74476323	G	A	35	75
BRCA	TCGA-A1-A0SO	COMMD4	SNP	Missense_Mutation	15	75632150	G	A	46	52
BRCA	TCGA-A1-A0SO	SLC28A1	SNP	Missense_Mutation	15	85438332	C	T	23	44
BRCA	TCGA-A1-A0SO	C15orf38-AP3S2	SNP	Missense_Mutation	15	90446465	C	T	26	91
BRCA	TCGA-A1-A0SO	C16orf62	SNP	Missense_Mutation	16	19566935	T	G	55	13
BRCA	TCGA-A1-A0SO	C16orf62	SNP	Missense_Mutation	16	19651363	G	T	48	100
BRCA	TCGA-A1-A0SO	E4F1	SNP	Silent	16	2283444	C	T	23	21
BRCA	TCGA-A1-A0SO	CACNG3	SNP	Missense_Mutation	16	24366196	C	T	19	75
BRCA	TCGA-A1-A0SO	SRRM2	SNP	Silent	16	2817240	G	A	39	53
BRCA	TCGA-A1-A0SO	TUFM	SNP	Missense_Mutation	16	28854300	C	T	18	88
BRCA	TCGA-A1-A0SO	CD19	SNP	Missense_Mutation	16	28944399	C	G	22	51
BRCA	TCGA-A1-A0SO	COG8	SNP	Missense_Mutation	16	69373380	G	C	34	65
BRCA	TCGA-A1-A0SO	TERF2	SNP	Missense_Mutation	16	69419547	A	C	3	62
BRCA	TCGA-A1-A0SO	HSD17B2	SNP	Missense_Mutation	16	82069075	C	A	22	44
BRCA	TCGA-A1-A0SO	MYH4	DEL	In_Frame_Del	17	10348650	CTT	-	28	78
BRCA	TCGA-A1-A0SO	DNAH9	SNP	Missense_Mutation	17	11515049	A	T	11	84
BRCA	TCGA-A1-A0SO	DNAH9	SNP	Missense_Mutation	17	11786995	C	A	20	70
BRCA	TCGA-A1-A0SO	NEK8	SNP	Missense_Mutation	17	27065227	G	T	40	100
BRCA	TCGA-A1-A0SO	LIG3	SNP	Silent	17	33310177	G	T	45	54
BRCA	TCGA-A1-A0SO	C17orf66	SNP	Missense_Mutation	17	34182707	G	C	36	56
BRCA	TCGA-A1-A0SO	KRT31	SNP	Silent	17	39553726	C	A	25	52
BRCA	TCGA-A1-A0SO	KRT36	SNP	Missense_Mutation	17	39645694	C	A	20	60
BRCA	TCGA-A1-A0SO	HAP1	SNP	Silent	17	39889028	C	T	27	43
BRCA	TCGA-A1-A0SO	BRCA1	SNP	Splice_Site	17	41276033	C	T	18	69
BRCA	TCGA-A1-A0SO	ABI3	SNP	Silent	17	47297295	G	A	40	44
BRCA	TCGA-A1-A0SO	SMG8	SNP	Missense_Mutation	17	57288043	C	A	28	77
BRCA	TCGA-A1-A0SO	BRIP1	SNP	Silent	17	59793371	T	G	57	53
BRCA	TCGA-A1-A0SO	GH2	SNP	Missense_Mutation	17	61958115	C	A	22	65
BRCA	TCGA-A1-A0SO	LRRC37A3	SNP	Missense_Mutation	17	62856626	T	C	54	61
BRCA	TCGA-A1-A0SO	RGS9	SNP	Silent	17	63200288	C	T	24	67
BRCA	TCGA-A1-A0SO	HELZ	SNP	Splice_Site	17	65144684	C	A	20	98
BRCA	TCGA-A1-A0SO	EVPL	SNP	Missense_Mutation	17	74006094	C	G	32	61
BRCA	TCGA-A1-A0SO	TP53	SNP	Missense_Mutation	17	7578190	T	C	49	88
BRCA	TCGA-A1-A0SO	CBX4	SNP	Missense_Mutation	17	77809031	C	T	23	59
BRCA	TCGA-A1-A0SO	ALOX12B	SNP	Silent	17	7980479	G	T	33	60
BRCA	TCGA-A1-A0SO	WDR45L	SNP	Missense_Mutation	17	80574405	A	C	10	88
BRCA	TCGA-A1-A0SO	ASXL3	SNP	Missense_Mutation	18	31324097	C	A	30	58
BRCA	TCGA-A1-A0SO	GALNT1	SNP	Silent	18	33267013	C	T	29	96
BRCA	TCGA-A1-A0SO	ELP2	SNP	Missense_Mutation	18	33726241	C	G	20	93
BRCA	TCGA-A1-A0SO	WDR7	SNP	Missense_Mutation	18	54444046	C	G	28	90
BRCA	TCGA-A1-A0SO	NARS	SNP	Missense_Mutation	18	55274697	G	T	33	76
BRCA	TCGA-A1-A0SO	BCL2	SNP	Silent	18	60985588	G	A	33	55
BRCA	TCGA-A1-A0SO	PPAN-P2RY11	SNP	Missense_Mutation	19	10224439	G	T	48	50
BRCA	TCGA-A1-A0SO	ZNF442	SNP	Missense_Mutation	19	12461308	A	T	7	71
BRCA	TCGA-A1-A0SO	BEST2	SNP	Missense_Mutation	19	12867020	G	C	43	93
BRCA	TCGA-A1-A0SO	CPAMD8	SNP	Missense_Mutation	19	17015092	C	A	17	78
BRCA	TCGA-A1-A0SO	TMEM161A	SNP	Silent	19	19232393	C	G	25	61
BRCA	TCGA-A1-A0SO	ZNF714	SNP	Translation_Start_Site	19	21281038	G	A	36	56
BRCA	TCGA-A1-A0SO	KIRREL2	SNP	Missense_Mutation	19	36352899	G	T	35	53
BRCA	TCGA-A1-A0SO	SIPA1L3	SNP	Missense_Mutation	19	38621312	G	A	40	84
BRCA	TCGA-A1-A0SO	FCGBP	SNP	Missense_Mutation	19	40412161	A	C	11	60
BRCA	TCGA-A1-A0SO	ZNF780A	SNP	Missense_Mutation	19	40587737	C	A	32	55
BRCA	TCGA-A1-A0SO	HIPK4	SNP	Missense_Mutation	19	40889772	T	A	59	67
BRCA	TCGA-A1-A0SO	SPTBN4	SNP	Missense_Mutation	19	41072203	G	C	42	96
BRCA	TCGA-A1-A0SO	HDGFRP2	SNP	Silent	19	4493843	G	T	37	13
BRCA	TCGA-A1-A0SO	PLEKHA4	SNP	Silent	19	49344514	G	C	46	49
BRCA	TCGA-A1-A0SO	ZNF528	SNP	Missense_Mutation	19	52919021	T	G	56	79
BRCA	TCGA-A1-A0SO	NLRP12	SNP	Missense_Mutation	19	54314363	C	T	27	49
BRCA	TCGA-A1-A0SO	SSC5D	SNP	Nonsense_Mutation	19	56024423	C	A	29	50
BRCA	TCGA-A1-A0SO	FAM123C	SNP	Silent	2	131520314	G	A	47	37
BRCA	TCGA-A1-A0SO	LCT	SNP	Silent	2	136575337	C	T	24	51
BRCA	TCGA-A1-A0SO	TANC1	SNP	Missense_Mutation	2	160086123	G	C	42	100
BRCA	TCGA-A1-A0SO	SCN7A	SNP	Missense_Mutation	2	167322362	C	T	17	99
BRCA	TCGA-A1-A0SO	CHN1	SNP	Missense_Mutation	2	175689201	A	T	3	92
BRCA	TCGA-A1-A0SO	TTN	SNP	Silent	2	179428167	C	T	19	29
BRCA	TCGA-A1-A0SO	TTN	SNP	Missense_Mutation	2	179558410	T	A	54	76
BRCA	TCGA-A1-A0SO	FAM117B	SNP	Missense_Mutation	2	203560685	A	T	16	88
BRCA	TCGA-A1-A0SO	IKZF2	SNP	Missense_Mutation	2	213872586	T	A	51	73
BRCA	TCGA-A1-A0SO	CXCR1	DNP	Missense_Mutation	2	219029170	CC	AA	26	82
BRCA	TCGA-A1-A0SO	COL4A3	SNP	Missense_Mutation	2	228147120	T	A	52	76
BRCA	TCGA-A1-A0SO	PKDCC	SNP	Silent	2	42284801	G	A	33	56
BRCA	TCGA-A1-A0SO	RTN4	SNP	Missense_Mutation	2	55253457	G	T	46	40
BRCA	TCGA-A1-A0SO	CCDC104	SNP	Missense_Mutation	2	55771103	A	G	4	53
BRCA	TCGA-A1-A0SO	USP34	SNP	Silent	2	61415828	A	T	11	53
BRCA	TCGA-A1-A0SO	ARHGAP25	SNP	Missense_Mutation	2	69040480	C	A	26	99
BRCA	TCGA-A1-A0SO	DYSF	SNP	Missense_Mutation	2	71795113	G	A	46	63
BRCA	TCGA-A1-A0SO	TACR1	SNP	Silent	2	75425803	T	A	55	8
BRCA	TCGA-A1-A0SO	REEP1	SNP	Missense_Mutation	2	86479180	C	A	17	84
BRCA	TCGA-A1-A0SO	PROCR	SNP	Silent	20	33764173	G	A	44	56
BRCA	TCGA-A1-A0SO	CHD6	SNP	Missense_Mutation	20	40033370	G	C	42	60
BRCA	TCGA-A1-A0SO	MATN4	SNP	Missense_Mutation	20	43927146	C	A	20	99
BRCA	TCGA-A1-A0SO	EYA2	SNP	Missense_Mutation	20	45717926	A	T	10	88
BRCA	TCGA-A1-A0SO	C20orf43	SNP	Missense_Mutation	20	55093275	A	T	3	77
BRCA	TCGA-A1-A0SO	PMEPA1	SNP	Nonsense_Mutation	20	56227204	C	A	30	72
BRCA	TCGA-A1-A0SO	SAMSN1	SNP	Silent	21	15872964	A	G	8	51
BRCA	TCGA-A1-A0SO	ADAMTS1	SNP	Silent	21	28212817	C	G	19	53
BRCA	TCGA-A1-A0SO	ERG	SNP	Missense_Mutation	21	39775576	T	A	56	49
BRCA	TCGA-A1-A0SO	KRTAP10-7	SNP	Missense_Mutation	21	46021285	G	T	46	61
BRCA	TCGA-A1-A0SO	PI4KA	DNP	Missense_Mutation	22	21150531	TC	CA	50	89
BRCA	TCGA-A1-A0SO	GGT5	SNP	Missense_Mutation	22	24627424	C	A	30	60
BRCA	TCGA-A1-A0SO	MYO18B	SNP	Missense_Mutation	22	26307000	G	A	39	88
BRCA	TCGA-A1-A0SO	CSF2RB	SNP	Missense_Mutation	22	37322204	A	T	6	47
BRCA	TCGA-A1-A0SO	CACNA1I	SNP	Silent	22	40075213	C	T	31	50
BRCA	TCGA-A1-A0SO	ENTHD1	SNP	Missense_Mutation	22	40139929	G	T	33	36
BRCA	TCGA-A1-A0SO	CHADL	SNP	Silent	22	41635537	G	A	34	54
BRCA	TCGA-A1-A0SO	CSF2RA	SNP	Missense_Mutation	23	1422866	G	A	40	44
BRCA	TCGA-A1-A0SO	IDS	SNP	Missense_Mutation	23	148568462	C	T	30	52
BRCA	TCGA-A1-A0SO	ATP2B3	SNP	Missense_Mutation	23	152830499	G	C	37	94
BRCA	TCGA-A1-A0SO	ARSE	SNP	Missense_Mutation	23	2861123	C	G	21	69
BRCA	TCGA-A1-A0SO	CACNA1F	SNP	Missense_Mutation	23	49066136	C	A	24	95
BRCA	TCGA-A1-A0SO	CACNA1F	SNP	Silent	23	49089736	G	A	41	55
BRCA	TCGA-A1-A0SO	GAGE10	SNP	Missense_Mutation	23	49173663	G	T	34	40
BRCA	TCGA-A1-A0SO	LAS1L	SNP	Missense_Mutation	23	64734836	T	G	59	55
BRCA	TCGA-A1-A0SO	AR	SNP	Missense_Mutation	23	66942814	C	A	20	53
BRCA	TCGA-A1-A0SO	BBX	SNP	Missense_Mutation	3	107466845	A	G	14	51
BRCA	TCGA-A1-A0SO	MORC1	SNP	Missense_Mutation	3	108812333	C	A	21	76
BRCA	TCGA-A1-A0SO	NDUFB4	SNP	Missense_Mutation	3	120315286	C	T	23	67
BRCA	TCGA-A1-A0SO	GOLGB1	SNP	Nonsense_Mutation	3	121415745	C	A	30	65
BRCA	TCGA-A1-A0SO	MYLK	SNP	Missense_Mutation	3	123512607	G	T	42	58
BRCA	TCGA-A1-A0SO	GYG1	SNP	Splice_site	3	148712063	A	T	11	88
BRCA	TCGA-A1-A0SO	GHSR	SNP	Missense_Mutation	3	172165999	A	T	10	62
BRCA	TCGA-A1-A0SO	EPHB3	SNP	Missense_Mutation	3	184299147	G	T	40	54
BRCA	TCGA-A1-A0SO	SDHAP2	SNP	Silent	3	195400839	C	T	31	49
BRCA	TCGA-A1-A0SO	LRRC33	SNP	Missense_Mutation	3	196387493	C	G	24	78
BRCA	TCGA-A1-A0SO	MFI2	SNP	Silent	3	196743115	C	T	19	43
BRCA	TCGA-A1-A0SO	NBEAL2	DEL	Frame_Shift_Del	3	47041418	CTTCT	-	28	83
BRCA	TCGA-A1-A0SO	UQCRC1	DEL	In_Frame_Del	3	48638832	CTGCATATGTCCATGGGATGC	-	32	70
BRCA	TCGA-A1-A0SO	ARL8B	SNP	Missense_Mutation	3	5164036	C	G	31	62
BRCA	TCGA-A1-A0SO	DCLK2	SNP	Missense_Mutation	4	151145689	C	G	17	79
BRCA	TCGA-A1-A0SO	ODZ3	SNP	Missense_Mutation	4	183522142	T	A	54	49
BRCA	TCGA-A1-A0SO	KLKB1	SNP	Missense_Mutation	4	187159474	G	A	40	52
BRCA	TCGA-A1-A0SO	HERC3	SNP	Silent	4	89597532	C	T	21	56
BRCA	TCGA-A1-A0SO	UNC5C	SNP	Missense_Mutation	4	96199426	C	G	22	86
BRCA	TCGA-A1-A0SO	DNAH5	SNP	Missense_Mutation	5	13868016	T	A	54	88
BRCA	TCGA-A1-A0SO	PCDH12	SNP	Missense_Mutation	5	141329074	G	A	35	54
BRCA	TCGA-A1-A0SO	GRIA1	DEL	Frame_Shift_Del	5	153085287	ATCACTTTGGTCCGGGA	-	16	88
BRCA	TCGA-A1-A0SO	SGCD	SNP	Silent	5	156184694	A	G	10	49
BRCA	TCGA-A1-A0SO	NIPAL4	SNP	Missense_Mutation	5	156890274	C	T	31	51
BRCA	TCGA-A1-A0SO	BTNL9	SNP	Silent	5	180475204	C	A	25	44
BRCA	TCGA-A1-A0SO	CDH18	SNP	Missense_Mutation	5	19503214	A	C	4	86
BRCA	TCGA-A1-A0SO	CCDC127	SNP	Missense_Mutation	5	205576	C	A	28	45
BRCA	TCGA-A1-A0SO	NADKD1	SNP	Silent	5	36211996	C	T	25	59
BRCA	TCGA-A1-A0SO	FGF10	SNP	Silent	5	44388749	G	T	35	97
BRCA	TCGA-A1-A0SO	PPAP2A	SNP	Missense_Mutation	5	54771192	A	C	13	78
BRCA	TCGA-A1-A0SO	ISCA1P1	SNP	Silent	5	62072647	C	G	22	54
BRCA	TCGA-A1-A0SO	ANKRD31	SNP	Silent	5	74400296	C	A	30	41
BRCA	TCGA-A1-A0SO	ARSB	SNP	Missense_Mutation	5	78181641	C	T	22	99
BRCA	TCGA-A1-A0SO	LYSMD3	SNP	Missense_Mutation	5	89815236	G	C	45	63
BRCA	TCGA-A1-A0SO	TSPYL1	SNP	Missense_Mutation	6	116599945	G	C	33	72
BRCA	TCGA-A1-A0SO	RANBP9	SNP	Missense_Mutation	6	13632730	G	A	40	73
BRCA	TCGA-A1-A0SO	SASH1	SNP	Splice_site	6	148861581	A	T	13	78
BRCA	TCGA-A1-A0SO	UST	SNP	Silent	6	149068740	C	T	32	61
BRCA	TCGA-A1-A0SO	EZR	SNP	Missense_Mutation	6	159190927	C	A	28	53
BRCA	TCGA-A1-A0SO	T	SNP	Missense_Mutation	6	166571853	G	C	47	92
BRCA	TCGA-A1-A0SO	OR5V1	SNP	Silent	6	29323322	G	C	35	48
BRCA	TCGA-A1-A0SO	DPCR1	SNP	Missense_Mutation	6	30916555	C	G	20	39
BRCA	TCGA-A1-A0SO	BTBD9	SNP	Missense_Mutation	6	38142776	G	T	44	61
BRCA	TCGA-A1-A0SO	PPP2R5D	SNP	Silent	6	42974675	C	T	28	86
BRCA	TCGA-A1-A0SO	SLC35B2	SNP	Silent	6	44223091	G	C	35	62
BRCA	TCGA-A1-A0SO	FILIP1	SNP	Missense_Mutation	6	76023340	G	T	48	66
BRCA	TCGA-A1-A0SO	SLC35B3	SNP	Silent	6	8417178	A	G	4	60
BRCA	TCGA-A1-A0SO	MOSPD3	SNP	Silent	7	100210890	C	T	17	62
BRCA	TCGA-A1-A0SO	MUC17	SNP	Missense_Mutation	7	100684815	C	T	20	46
BRCA	TCGA-A1-A0SO	SLC13A4	SNP	Silent	7	135380202	G	T	46	54
BRCA	TCGA-A1-A0SO	DGKI	SNP	Missense_Mutation	7	137339506	C	A	31	73
BRCA	TCGA-A1-A0SO	TBXAS1	SNP	Missense_Mutation	7	139661880	G	C	48	61
BRCA	TCGA-A1-A0SO	CLCN1	SNP	Missense_Mutation	7	143013381	C	A	26	57
BRCA	TCGA-A1-A0SO	NOBOX	SNP	Silent	7	144101772	C	T	26	38
BRCA	TCGA-A1-A0SO	KRBA1	SNP	Missense_Mutation	7	149425677	C	T	24	50
BRCA	TCGA-A1-A0SO	HTR5A	SNP	Missense_Mutation	7	154862919	G	T	39	97
BRCA	TCGA-A1-A0SO	RBM33	SNP	Silent	7	155499624	C	A	28	55
BRCA	TCGA-A1-A0SO	AMZ1	SNP	Nonsense_Mutation	7	2740317	C	T	21	48
BRCA	TCGA-A1-A0SO	TRIL	SNP	Missense_Mutation	7	28997619	C	T	26	65
BRCA	TCGA-A1-A0SO	TBX20	SNP	Missense_Mutation	7	35242302	G	T	43	97
BRCA	TCGA-A1-A0SO	URGCP	SNP	Missense_Mutation	7	43918056	T	A	62	89
BRCA	TCGA-A1-A0SO	ADCY1	SNP	Missense_Mutation	7	45662233	T	G	50	86
BRCA	TCGA-A1-A0SO	CACNA2D1	SNP	Missense_Mutation	7	81643739	C	A	20	59
BRCA	TCGA-A1-A0SO	GRM3	SNP	Missense_Mutation	7	86468211	G	C	33	100
BRCA	TCGA-A1-A0SO	TNFRSF11B	SNP	Nonsense_Mutation	8	119938847	C	A	32	69
BRCA	TCGA-A1-A0SO	NOV	SNP	Missense_Mutation	8	120431463	A	T	11	94
BRCA	TCGA-A1-A0SO	CPSF1	SNP	Silent	8	145623208	G	T	42	53
BRCA	TCGA-A1-A0SO	KCNU1	SNP	Silent	8	36671892	T	C	60	55
BRCA	TCGA-A1-A0SO	ANK1	SNP	Missense_Mutation	8	41580687	C	G	32	100
BRCA	TCGA-A1-A0SO	IKBKB	SNP	Missense_Mutation	8	42177138	G	A	41	84
BRCA	TCGA-A1-A0SO	LYN	SNP	Missense_Mutation	8	56863331	G	A	45	100
BRCA	TCGA-A1-A0SO	RPL35	SNP	Missense_Mutation	9	127620210	G	C	38	100
BRCA	TCGA-A1-A0SO	ASS1	SNP	Missense_Mutation	9	133355834	G	C	37	79
BRCA	TCGA-A1-A0SO	PHF2	DEL	Frame_Shift_Del	9	96425216	A	-	5	73
BRCA	TCGA-A1-A0SP	TXNIP	SNP	Missense_Mutation	1	145440077	A	G	8	59
BRCA	TCGA-A1-A0SP	ZNF687	SNP	Missense_Mutation	1	151259248	G	A	41	80
BRCA	TCGA-A1-A0SP	ASPM	DEL	Frame_Shift_Del	1	197056085	G	-	47	53
BRCA	TCGA-A1-A0SP	ZC3H11A	SNP	Missense_Mutation	1	203798941	C	T	17	63
BRCA	TCGA-A1-A0SP	KCTD3	SNP	Missense_Mutation	1	215753269	C	G	19	62
BRCA	TCGA-A1-A0SP	ARID1A	SNP	Missense_Mutation	1	27106816	C	T	23	75
BRCA	TCGA-A1-A0SP	ZBTB8B	SNP	Missense_Mutation	1	32937081	C	T	27	53
BRCA	TCGA-A1-A0SP	CCDC172	DEL	Frame_Shift_Del	10	118101618	A	-	12	80
BRCA	TCGA-A1-A0SP	KIF20B	DEL	Frame_Shift_Del	10	91483856	T	-	56	76
BRCA	TCGA-A1-A0SP	PDE6C	SNP	Missense_Mutation	10	95394645	A	C	8	77
BRCA	TCGA-A1-A0SP	ALDH18A1	SNP	Missense_Mutation	10	97371060	A	G	12	86
BRCA	TCGA-A1-A0SP	ABCG4	SNP	Silent	11	119028976	C	T	21	60
BRCA	TCGA-A1-A0SP	TECTA	SNP	Silent	11	121031032	C	T	19	40
BRCA	TCGA-A1-A0SP	ATG2A	SNP	Silent	11	64668490	C	T	26	56
BRCA	TCGA-A1-A0SP	BATF2	SNP	Nonsense_Mutation	11	64756807	G	A	48	61
BRCA	TCGA-A1-A0SP	ARHGEF17	SNP	Missense_Mutation	11	73020359	G	T	39	63
BRCA	TCGA-A1-A0SP	YEATS4	INS	Frame_Shift_Ins	12	69784092	-	A	49	73
BRCA	TCGA-A1-A0SP	LOC643677	SNP	Missense_Mutation	13	103393722	C	A	32	51
BRCA	TCGA-A1-A0SP	PCDH20	SNP	Missense_Mutation	13	61985500	A	T	12	91
BRCA	TCGA-A1-A0SP	TXNDC16	SNP	Nonsense_Mutation	14	52978095	C	A	30	65
BRCA	TCGA-A1-A0SP	CYFIP1	SNP	Missense_Mutation	15	22947066	G	A	41	99
BRCA	TCGA-A1-A0SP	NUSAP1	DEL	Frame_Shift_Del	15	41669445	A	-	8	50
BRCA	TCGA-A1-A0SP	C15orf58	SNP	Missense_Mutation	15	90784940	A	G	11	61
BRCA	TCGA-A1-A0SP	KCNG4	SNP	Silent	16	84270972	G	A	36	58
BRCA	TCGA-A1-A0SP	GPATCH8	SNP	Silent	17	42477336	C	T	20	62
BRCA	TCGA-A1-A0SP	TP53	SNP	Nonsense_Mutation	17	7578382	G	C	45	58
BRCA	TCGA-A1-A0SP	DNAH17	SNP	Missense_Mutation	17	76433854	C	T	27	99
BRCA	TCGA-A1-A0SP	POU2F2	SNP	Missense_Mutation	19	42599447	G	T	42	75
BRCA	TCGA-A1-A0SP	LRRC4B	SNP	Missense_Mutation	19	51022151	G	T	37	59
BRCA	TCGA-A1-A0SP	ZNF749	SNP	Silent	19	57956358	C	T	25	49
BRCA	TCGA-A1-A0SP	BSG	SNP	Missense_Mutation	19	580426	C	T	22	60
BRCA	TCGA-A1-A0SP	SLC4A10	SNP	Missense_Mutation	2	162757469	G	A	41	100
BRCA	TCGA-A1-A0SP	COPS7B	SNP	Missense_Mutation	2	232653392	C	T	30	93
BRCA	TCGA-A1-A0SP	KCNQ2	SNP	Missense_Mutation	20	62045493	A	G	2	78
BRCA	TCGA-A1-A0SP	POTEH	SNP	Missense_Mutation	22	16287562	G	C	34	52
BRCA	TCGA-A1-A0SP	THAP7	SNP	Missense_Mutation	22	21354432	C	T	23	65
BRCA	TCGA-A1-A0SP	SHANK3	SNP	Missense_Mutation	22	51133438	T	G	59	38
BRCA	TCGA-A1-A0SP	ALG13	SNP	Missense_Mutation	23	110970225	G	A	45	64
BRCA	TCGA-A1-A0SP	ZMYM3	SNP	Missense_Mutation	23	70462188	G	C	35	81
BRCA	TCGA-A1-A0SP	LRIT3	SNP	Silent	4	110789053	C	A	22	49
BRCA	TCGA-A1-A0SP	FBXW7	DEL	Frame_Shift_Del	4	153253808	G	-	37	88
BRCA	TCGA-A1-A0SP	MARCH1	SNP	Silent	4	164507069	G	A	38	59
BRCA	TCGA-A1-A0SP	THBS4	SNP	Silent	5	79375018	G	A	39	12
BRCA	TCGA-A1-A0SP	HIST1H2BK	SNP	Missense_Mutation	6	27114460	C	T	19	67
BRCA	TCGA-A1-A0SP	MMS22L	SNP	Missense_Mutation	6	97634387	G	A	38	84
BRCA	TCGA-A1-A0SP	SDK1	SNP	Missense_Mutation	7	4185495	G	A	35	64
BRCA	TCGA-A1-A0SP	EPPK1	SNP	Silent	8	144947299	C	T	30	59
BRCA	TCGA-A1-A0SP	SVEP1	SNP	Missense_Mutation	9	113170187	C	G	21	100
BRCA	TCGA-A1-A0SQ	MTOR	SNP	Silent	1	11300583	G	C	33	58
BRCA	TCGA-A1-A0SQ	FAM71A	SNP	Missense_Mutation	1	212799630	G	A	33	50
BRCA	TCGA-A1-A0SQ	WNT4	SNP	Missense_Mutation	1	22446727	G	A	40	95
BRCA	TCGA-A1-A0SQ	GATA3	INS	Frame_Shift_Ins	10	8115955	-	C	6	92
BRCA	TCGA-A1-A0SQ	PLCE1	SNP	Missense_Mutation	10	96076406	C	A	18	79
BRCA	TCGA-A1-A0SQ	HYOU1	SNP	Missense_Mutation	11	118917361	G	A	39	56
BRCA	TCGA-A1-A0SQ	ANKLE2	SNP	Missense_Mutation	12	133313525	G	A	39	95
BRCA	TCGA-A1-A0SQ	TTC7B	SNP	Missense_Mutation	14	91156023	G	A	38	61
BRCA	TCGA-A1-A0SQ	GANC	SNP	Missense_Mutation	15	42619578	G	A	41	97
BRCA	TCGA-A1-A0SQ	CGNL1	SNP	Silent	15	57754042	T	C	51	46
BRCA	TCGA-A1-A0SQ	TMEM132E	SNP	Silent	17	32963064	G	A	38	42
BRCA	TCGA-A1-A0SQ	RFNG	SNP	Missense_Mutation	17	80008605	G	A	38	90
BRCA	TCGA-A1-A0SQ	RASGRP4	SNP	Silent	19	38910824	G	A	39	22
BRCA	TCGA-A1-A0SQ	MAP4K1	SNP	Silent	19	39092118	G	A	41	64
BRCA	TCGA-A1-A0SQ	BCKDHA	SNP	Silent	19	41903744	G	A	37	52
BRCA	TCGA-A1-A0SQ	PTPRH	SNP	Missense_Mutation	19	55707989	C	G	22	59
BRCA	TCGA-A1-A0SQ	CCDC106	SNP	Silent	19	56160842	C	T	32	72
BRCA	TCGA-A1-A0SQ	KIF1A	SNP	Missense_Mutation	2	241684897	G	A	42	97
BRCA	TCGA-A1-A0SQ	BMX	SNP	Missense_Mutation	23	15554529	G	A	37	48
BRCA	TCGA-A1-A0SQ	DCAF8L1	SNP	Missense_Mutation	23	27998516	G	C	45	51
BRCA	TCGA-A1-A0SQ	C3orf30	SNP	Missense_Mutation	3	118865802	G	A	40	51
BRCA	TCGA-A1-A0SQ	MCCC1	INS	Frame_Shift_Ins	3	182812366	-	A	29	77
BRCA	TCGA-A1-A0SQ	METAP1	SNP	Missense_Mutation	4	99966365	G	T	41	98
BRCA	TCGA-A1-A0SQ	PIM1	SNP	Silent	6	37139176	C	T	17	80
BRCA	TCGA-A1-A0SQ	MUC12	SNP	Missense_Mutation	7	100639913	C	G	25	39
BRCA	TCGA-A1-A0SQ	XRCC2	SNP	Missense_Mutation	7	152345989	G	A	40	89
BRCA	TCGA-A1-A0SQ	SEMA3A	SNP	Missense_Mutation	7	83610743	G	A	39	79
BRCA	TCGA-A1-A0SQ	RP1L1	SNP	Nonsense_Mutation	8	10466300	G	A	45	52
BRCA	TCGA-A1-A0SQ	ANK1	SNP	Missense_Mutation	8	41551422	C	T	19	86
BRCA	TCGA-A1-A0SQ	NTRK2	SNP	Silent	9	87635261	C	T	18	58
BRCA	TCGA-A2-A04N	CD55	DEL	Frame_Shift_Del	1	207498015	A	-	14	55
BRCA	TCGA-A2-A04N	DHX32	SNP	Silent	10	127527669	A	G	13	45
BRCA	TCGA-A2-A04N	MYO3A	SNP	Missense_Mutation	10	26409687	A	G	7	79
BRCA	TCGA-A2-A04N	KIRREL3	SNP	Silent	11	126294697	C	T	28	81
BRCA	TCGA-A2-A04N	RAD9A	SNP	Nonsense_Mutation	11	67161199	T	A	59	49
BRCA	TCGA-A2-A04N	RNFT2	SNP	Missense_Mutation	12	117178862	C	T	19	68
BRCA	TCGA-A2-A04N	OR4L1	SNP	Missense_Mutation	14	20528495	G	A	40	52
BRCA	TCGA-A2-A04N	VRTN	SNP	Missense_Mutation	14	74824516	C	T	23	66
BRCA	TCGA-A2-A04N	EML5	SNP	Missense_Mutation	14	89172755	T	A	64	86
BRCA	TCGA-A2-A04N	TCF12	SNP	Missense_Mutation	15	57554331	A	C	5	71
BRCA	TCGA-A2-A04N	ANKRD34C	SNP	Missense_Mutation	15	79586096	C	T	31	92
BRCA	TCGA-A2-A04N	UNC45B	SNP	Missense_Mutation	17	33496946	C	T	31	78
BRCA	TCGA-A2-A04N	GDPD1	SNP	Missense_Mutation	17	57334498	G	A	41	95
BRCA	TCGA-A2-A04N	PIK3C3	SNP	Missense_Mutation	18	39613908	C	A	28	96
BRCA	TCGA-A2-A04N	MYO5B	SNP	Missense_Mutation	18	47402068	T	G	63	55
BRCA	TCGA-A2-A04N	LAMA1	SNP	Silent	18	7046346	G	A	48	59
BRCA	TCGA-A2-A04N	ZNF791	SNP	Missense_Mutation	19	12734520	G	T	36	56
BRCA	TCGA-A2-A04N	OR10H1	SNP	Missense_Mutation	19	15918231	G	A	40	48
BRCA	TCGA-A2-A04N	ZNF461	SNP	Silent	19	37129666	G	A	38	53
BRCA	TCGA-A2-A04N	MUC16	SNP	Missense_Mutation	19	9088087	G	T	35	51
BRCA	TCGA-A2-A04N	SCN2A	SNP	Missense_Mutation	2	166201098	A	C	2	92
BRCA	TCGA-A2-A04N	TTN	SNP	Silent	2	179640414	G	T	45	64
BRCA	TCGA-A2-A04N	KANSL1L	SNP	Silent	2	211018779	C	T	32	75
BRCA	TCGA-A2-A04N	PRKAG3	SNP	Missense_Mutation	2	219688550	A	G	11	76
BRCA	TCGA-A2-A04N	REG1B	SNP	Missense_Mutation	2	79314722	G	A	37	51
BRCA	TCGA-A2-A04N	KIF16B	SNP	Splice_Site	20	16474996	C	A	24	93
BRCA	TCGA-A2-A04N	ASXL1	SNP	Nonsense_Mutation	20	31021535	C	T	29	88
BRCA	TCGA-A2-A04N	PCNT	SNP	Missense_Mutation	21	47821574	C	T	24	51
BRCA	TCGA-A2-A04N	MAGEE2	SNP	Missense_Mutation	23	75004120	C	G	32	55
BRCA	TCGA-A2-A04N	COL6A6	SNP	Missense_Mutation	3	130292858	G	T	34	24
BRCA	TCGA-A2-A04N	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-A2-A04N	ELP6	SNP	Splice_site	3	47555027	C	A	24	65
BRCA	TCGA-A2-A04N	SCLT1	SNP	Missense_Mutation	4	129886386	T	A	52	52
BRCA	TCGA-A2-A04N	FAM13A	SNP	Silent	4	89649699	A	G	4	49
BRCA	TCGA-A2-A04N	MAP3K1	DEL	Frame_Shift_Del	5	56168534	C	-	32	80
BRCA	TCGA-A2-A04N	MAP3K1	DEL	In_Frame_Del	5	56181812	GTT	-	36	65
BRCA	TCGA-A2-A04N	MAP3K1	SNP	Missense_Mutation	5	56183211	A	G	4	86
BRCA	TCGA-A2-A04N	MAP3K1	SNP	Missense_Mutation	5	56184105	G	T	48	94
BRCA	TCGA-A2-A04N	ZSCAN12	SNP	Missense_Mutation	6	28365880	C	G	28	66
BRCA	TCGA-A2-A04N	CHN2	SNP	Missense_Mutation	7	29535591	C	A	20	63
BRCA	TCGA-A2-A04N	TSNARE1	SNP	Missense_Mutation	8	143356158	C	T	30	56
BRCA	TCGA-A2-A04N	WRN	DEL	In_Frame_Del	8	30945377	AAG	-	1	59
BRCA	TCGA-A2-A04N	OR1J4	SNP	Missense_Mutation	9	125281810	C	T	23	85
BRCA	TCGA-A2-A04P	HIPK1	SNP	Missense_Mutation	1	114510483	A	G	4	72
BRCA	TCGA-A2-A04P	UBE2J2	SNP	Missense_Mutation	1	1190626	G	A	34	83
BRCA	TCGA-A2-A04P	SETDB1	SNP	Missense_Mutation	1	150933074	G	T	43	96
BRCA	TCGA-A2-A04P	FASLG	SNP	Missense_Mutation	1	172628648	C	A	29	76
BRCA	TCGA-A2-A04P	CYB5R1	SNP	Missense_Mutation	1	202935062	G	C	41	94
BRCA	TCGA-A2-A04P	EIF4G3	DEL	In_Frame_Del	1	21268078	TTTTGCATCTTCACTAAGGCAAGTTCT	-	56	54
BRCA	TCGA-A2-A04P	RYR2	SNP	Splice_site	1	237586392	G	T	44	51
BRCA	TCGA-A2-A04P	GJA4	SNP	Missense_Mutation	1	35260061	C	G	24	74
BRCA	TCGA-A2-A04P	EIF2C4	SNP	Missense_Mutation	1	36298080	C	G	27	60
BRCA	TCGA-A2-A04P	HEYL	SNP	Nonsense_Mutation	1	40092514	G	A	39	51
BRCA	TCGA-A2-A04P	NPHP4	SNP	Silent	1	5926438	A	T	1	49
BRCA	TCGA-A2-A04P	NOL9	SNP	Silent	1	6593398	C	G	17	53
BRCA	TCGA-A2-A04P	PPRC1	SNP	Missense_Mutation	10	103907133	C	T	17	58
BRCA	TCGA-A2-A04P	TDRD1	SNP	Missense_Mutation	10	115964497	T	C	57	66
BRCA	TCGA-A2-A04P	RPP38	SNP	Missense_Mutation	10	15145558	T	C	52	17
BRCA	TCGA-A2-A04P	PTCHD3	SNP	Missense_Mutation	10	27702555	C	T	19	58
BRCA	TCGA-A2-A04P	ARHGAP22	SNP	Missense_Mutation	10	49658718	G	C	41	53
BRCA	TCGA-A2-A04P	C10orf71	SNP	Missense_Mutation	10	50532310	A	G	9	50
BRCA	TCGA-A2-A04P	ERCC6	SNP	Silent	10	50690883	C	A	17	68
BRCA	TCGA-A2-A04P	GSTP1	SNP	Silent	11	67353658	C	G	25	51
BRCA	TCGA-A2-A04P	TAS2R31	SNP	Missense_Mutation	12	11183563	T	G	54	47
BRCA	TCGA-A2-A04P	RBM19	SNP	Missense_Mutation	12	114296661	T	C	50	53
BRCA	TCGA-A2-A04P	PTPRO	SNP	Missense_Mutation	12	15637127	G	C	36	85
BRCA	TCGA-A2-A04P	SLCO1C1	SNP	Missense_Mutation	12	20890110	G	C	33	52
BRCA	TCGA-A2-A04P	PYROXD1	SNP	Missense_Mutation	12	21621644	G	C	33	83
BRCA	TCGA-A2-A04P	FGF6	SNP	Missense_Mutation	12	4543446	G	A	40	73
BRCA	TCGA-A2-A04P	BIN2	SNP	Missense_Mutation	12	51696916	G	A	47	50
BRCA	TCGA-A2-A04P	PDE1B	SNP	Silent	12	54962960	G	T	43	67
BRCA	TCGA-A2-A04P	ERBB3	SNP	Missense_Mutation	12	56495315	A	C	14	52
BRCA	TCGA-A2-A04P	VWF	SNP	Silent	12	6078555	G	A	37	41
BRCA	TCGA-A2-A04P	OTOGL	SNP	Missense_Mutation	12	80712472	C	G	24	85
BRCA	TCGA-A2-A04P	N4BP2L2	SNP	Silent	13	33018233	C	T	26	40
BRCA	TCGA-A2-A04P	MAB21L1	SNP	Silent	13	36050009	C	T	21	100
BRCA	TCGA-A2-A04P	OR4L1	SNP	Silent	14	20529103	A	G	4	58
BRCA	TCGA-A2-A04P	ABHD4	SNP	Silent	14	23078768	G	A	39	33
BRCA	TCGA-A2-A04P	MTHFD1	SNP	Missense_Mutation	14	64906860	C	G	32	100
BRCA	TCGA-A2-A04P	SPTBN5	SNP	Missense_Mutation	15	42185136	A	C	3	89
BRCA	TCGA-A2-A04P	TTBK2	SNP	Silent	15	43045173	T	C	56	57
BRCA	TCGA-A2-A04P	DPP8	SNP	Splice_Site	15	65799695	T	A	53	81
BRCA	TCGA-A2-A04P	ITGA11	SNP	Splice_Site	15	68599782	C	A	28	87
BRCA	TCGA-A2-A04P	SALL1	SNP	Missense_Mutation	16	51173426	A	G	12	78
BRCA	TCGA-A2-A04P	VAC14	SNP	Missense_Mutation	16	70796918	C	T	28	51
BRCA	TCGA-A2-A04P	CNTNAP4	SNP	Missense_Mutation	16	76587299	C	A	22	55
BRCA	TCGA-A2-A04P	MYO18A	SNP	Missense_Mutation	17	27448654	G	A	38	83
BRCA	TCGA-A2-A04P	DHX58	SNP	Missense_Mutation	17	40259747	A	T	7	88
BRCA	TCGA-A2-A04P	CEP95	SNP	Missense_Mutation	17	62506293	C	A	24	62
BRCA	TCGA-A2-A04P	TP53	DEL	Frame_Shift_Del	17	7579364	C	-	18	58
BRCA	TCGA-A2-A04P	RPTOR	SNP	Missense_Mutation	17	78867561	G	C	34	98
BRCA	TCGA-A2-A04P	ENSG00000215512	SNP	Missense_Mutation	18	15325936	G	T	47	54
BRCA	TCGA-A2-A04P	EMILIN2	SNP	Missense_Mutation	18	2890828	C	A	26	97
BRCA	TCGA-A2-A04P	LOXHD1	SNP	Missense_Mutation	18	44122705	C	G	21	96
BRCA	TCGA-A2-A04P	GRIN3B	SNP	Missense_Mutation	19	1005266	C	T	27	94
BRCA	TCGA-A2-A04P	OR7A10	DEL	Frame_Shift_Del	19	14952332	AGGCCATCACGGTCAGA	-	15	59
BRCA	TCGA-A2-A04P	PGLS	SNP	Splice_Site	19	17628661	T	A	57	90
BRCA	TCGA-A2-A04P	LIPE	SNP	Silent	19	42911525	C	G	29	54
BRCA	TCGA-A2-A04P	DUS3L	SNP	Missense_Mutation	19	5785618	A	T	6	85
BRCA	TCGA-A2-A04P	PLEKHB2	SNP	Missense_Mutation	2	131904268	C	G	19	47
BRCA	TCGA-A2-A04P	TANC1	SNP	Missense_Mutation	2	160035597	G	A	48	100
BRCA	TCGA-A2-A04P	USP37	SNP	Missense_Mutation	2	219411017	C	G	29	64
BRCA	TCGA-A2-A04P	PSMD1	SNP	Missense_Mutation	2	231927249	G	A	39	88
BRCA	TCGA-A2-A04P	RBM44	SNP	Missense_Mutation	2	238726909	G	A	48	45
BRCA	TCGA-A2-A04P	ILKAP	DEL	Frame_Shift_Del	2	239079209	C	-	19	96
BRCA	TCGA-A2-A04P	C2orf18	SNP	Silent	2	26998354	C	T	21	61
BRCA	TCGA-A2-A04P	SOS1	SNP	Nonsense_Mutation	2	39281774	G	C	45	74
BRCA	TCGA-A2-A04P	DNAH6	SNP	Silent	2	84881840	T	C	63	57
BRCA	TCGA-A2-A04P	C20orf132	SNP	Missense_Mutation	20	35737007	T	C	54	73
BRCA	TCGA-A2-A04P	C20orf132	SNP	Splice_Site	20	35743575	C	T	17	77
BRCA	TCGA-A2-A04P	CXADR	SNP	Silent	21	18933138	C	G	30	50
BRCA	TCGA-A2-A04P	IL10RB	SNP	Missense_Mutation	21	34652083	G	A	36	51
BRCA	TCGA-A2-A04P	KCNJ4	SNP	Missense_Mutation	22	38823629	G	T	44	99
BRCA	TCGA-A2-A04P	ATF4	SNP	Missense_Mutation	22	39917510	C	G	31	69
BRCA	TCGA-A2-A04P	PACSIN2	SNP	Splice_site	22	43267475	C	G	22	97
BRCA	TCGA-A2-A04P	SERPINA7	SNP	Silent	23	105278253	T	G	55	49
BRCA	TCGA-A2-A04P	PAK3	SNP	Missense_Mutation	23	110459702	A	C	10	76
BRCA	TCGA-A2-A04P	MAGEA1	SNP	Missense_Mutation	23	152482175	A	G	10	56
BRCA	TCGA-A2-A04P	ASB9	SNP	Missense_Mutation	23	15267033	C	T	18	51
BRCA	TCGA-A2-A04P	PHEX	SNP	Missense_Mutation	23	22237179	T	C	57	85
BRCA	TCGA-A2-A04P	IL1RAPL1	SNP	Missense_Mutation	23	29973934	G	T	44	94
BRCA	TCGA-A2-A04P	AKAP4	SNP	Missense_Mutation	23	49957298	A	T	8	69
BRCA	TCGA-A2-A04P	SHROOM4	SNP	Silent	23	50381257	C	A	21	60
BRCA	TCGA-A2-A04P	CCRL1	SNP	Missense_Mutation	3	132320043	A	G	8	89
BRCA	TCGA-A2-A04P	KCNAB1	SNP	Missense_Mutation	3	155838561	A	T	7	61
BRCA	TCGA-A2-A04P	PIK3CA	SNP	Missense_Mutation	3	178916876	G	A	37	97
BRCA	TCGA-A2-A04P	IQCF1	SNP	Missense_Mutation	3	51928941	C	A	17	48
BRCA	TCGA-A2-A04P	ROBO2	SNP	Missense_Mutation	3	77651571	G	T	34	74
BRCA	TCGA-A2-A04P	ADAD1	SNP	Splice_site	4	123304955	T	G	57	49
BRCA	TCGA-A2-A04P	UNC5C	SNP	Missense_Mutation	4	96166163	C	G	20	59
BRCA	TCGA-A2-A04P	PDLIM4	SNP	Missense_Mutation	5	131607861	A	T	3	69
BRCA	TCGA-A2-A04P	PCDHA13	SNP	Missense_Mutation	5	140263402	G	A	44	55
BRCA	TCGA-A2-A04P	PCDHGB4	SNP	Missense_Mutation	5	140769441	G	A	37	82
BRCA	TCGA-A2-A04P	RBM27	SNP	Missense_Mutation	5	145610352	C	A	20	94
BRCA	TCGA-A2-A04P	HTR1A	DEL	Frame_Shift_Del	5	63257274	G	-	47	68
BRCA	TCGA-A2-A04P	HTR1A	SNP	Missense_Mutation	5	63257275	G	A	43	96
BRCA	TCGA-A2-A04P	BVES	SNP	Missense_Mutation	6	105573408	C	T	29	84
BRCA	TCGA-A2-A04P	ERVFRD-1	SNP	Silent	6	11104836	A	G	11	52
BRCA	TCGA-A2-A04P	WTAP	SNP	Missense_Mutation	6	160164703	A	C	12	93
BRCA	TCGA-A2-A04P	SRPK1	SNP	Missense_Mutation	6	35810362	C	A	18	97
BRCA	TCGA-A2-A04P	FARS2	SNP	Missense_Mutation	6	5431360	G	C	41	95
BRCA	TCGA-A2-A04P	UFL1	SNP	Missense_Mutation	6	96997376	A	G	4	67
BRCA	TCGA-A2-A04P	KLHL32	SNP	Missense_Mutation	6	97533213	G	T	47	100
BRCA	TCGA-A2-A04P	MUC12	SNP	Missense_Mutation	7	100635585	C	T	21	48
BRCA	TCGA-A2-A04P	OR9A2	SNP	Missense_Mutation	7	142723943	G	C	33	69
BRCA	TCGA-A2-A04P	INTS1	SNP	Missense_Mutation	7	1535175	G	A	39	71
BRCA	TCGA-A2-A04P	PDE1C	SNP	Silent	7	31887635	C	T	25	51
BRCA	TCGA-A2-A04P	OGDH	SNP	Missense_Mutation	7	44734067	G	A	48	100
BRCA	TCGA-A2-A04P	GRM3	SNP	Missense_Mutation	7	86468742	C	G	18	77
BRCA	TCGA-A2-A04P	AKAP9	SNP	Missense_Mutation	7	91690649	C	G	24	74
BRCA	TCGA-A2-A04P	FAM135B	SNP	Missense_Mutation	8	139263115	C	A	25	72
BRCA	TCGA-A2-A04P	TEX15	SNP	Missense_Mutation	8	30702239	C	G	20	39
BRCA	TCGA-A2-A04P	HOOK3	SNP	Missense_Mutation	8	42819469	G	C	41	85
BRCA	TCGA-A2-A04P	HGSNAT	SNP	Missense_Mutation	8	43052147	C	G	29	48
BRCA	TCGA-A2-A04P	CNGB3	SNP	Splice_site	8	87751884	T	A	56	69
BRCA	TCGA-A2-A04P	TEX10	SNP	Silent	9	103065953	G	A	47	52
BRCA	TCGA-A2-A04P	FKBP15	DEL	In_Frame_Del	9	115931997	CCTGAGGAGGCAACGGGACAGCTT	-	26	57
BRCA	TCGA-A2-A04P	SEMA4D	SNP	Nonsense_Mutation	9	92017794	G	A	46	68
BRCA	TCGA-A2-A04Q	ARHGEF10L	SNP	Silent	1	17964411	C	A	32	60
BRCA	TCGA-A2-A04Q	DNAH14	INS	Splice_Site	1	225328430	-	AG	49	33
BRCA	TCGA-A2-A04Q	SEC31B	SNP	Missense_Mutation	10	102247512	C	T	31	62
BRCA	TCGA-A2-A04Q	ARID2	SNP	Missense_Mutation	12	46230605	G	A	39	100
BRCA	TCGA-A2-A04Q	NF1	SNP	Nonsense_Mutation	17	29548939	G	A	43	98
BRCA	TCGA-A2-A04Q	TEKT1	SNP	Silent	17	6733605	T	G	56	56
BRCA	TCGA-A2-A04Q	GPI	INS	Frame_Shift_Ins	19	34856187	-	G	23	53
BRCA	TCGA-A2-A04Q	ARHGEF1	SNP	Splice_site	19	42396193	C	T	27	78
BRCA	TCGA-A2-A04Q	NF1P6	SNP	Silent	22	16346045	T	C	64	50
BRCA	TCGA-A2-A04Q	CLSTN2	SNP	Silent	3	140251267	C	T	19	50
BRCA	TCGA-A2-A04Q	MST1	DEL	Frame_Shift_Del	3	49723112	T	-	60	86
BRCA	TCGA-A2-A04Q	CASP2	SNP	Missense_Mutation	7	142985571	C	T	32	50
BRCA	TCGA-A2-A04Q	HECW1	SNP	Silent	7	43590145	C	T	27	37
BRCA	TCGA-A2-A04R	ECM1	SNP	Missense_Mutation	1	150484230	C	A	28	71
BRCA	TCGA-A2-A04R	LCE2A	DEL	Frame_Shift_Del	1	152671581	C	-	26	46
BRCA	TCGA-A2-A04R	LCE2A	SNP	Missense_Mutation	1	152671582	C	G	24	49
BRCA	TCGA-A2-A04R	ZNF238	SNP	Silent	1	244218516	C	T	27	50
BRCA	TCGA-A2-A04R	CSMD2	SNP	Missense_Mutation	1	34068091	G	T	41	65
BRCA	TCGA-A2-A04R	C10orf88	SNP	Missense_Mutation	10	124708257	G	T	35	69
BRCA	TCGA-A2-A04R	TUBGCP2	SNP	Missense_Mutation	10	135113545	T	C	57	51
BRCA	TCGA-A2-A04R	FAM107B	SNP	Missense_Mutation	10	14816305	C	A	28	53
BRCA	TCGA-A2-A04R	MASTL	SNP	Missense_Mutation	10	27454445	A	T	16	52
BRCA	TCGA-A2-A04R	FUT11	SNP	Missense_Mutation	10	75532267	C	A	19	62
BRCA	TCGA-A2-A04R	LRIT1	SNP	Silent	10	85993929	G	A	43	52
BRCA	TCGA-A2-A04R	EXPH5	SNP	Missense_Mutation	11	108381259	A	T	2	49
BRCA	TCGA-A2-A04R	NPAS4	SNP	Missense_Mutation	11	66191919	C	G	22	59
BRCA	TCGA-A2-A04R	ENSG00000179821	SNP	Missense_Mutation	12	105370677	C	T	27	51
BRCA	TCGA-A2-A04R	IFLTD1	SNP	Missense_Mutation	12	25679085	T	G	56	41
BRCA	TCGA-A2-A04R	TM7SF3	SNP	Nonsense_Mutation	12	27127095	C	A	32	98
BRCA	TCGA-A2-A04R	ACVR1B	SNP	Missense_Mutation	12	52374976	C	G	17	71
BRCA	TCGA-A2-A04R	NALCN	SNP	Silent	13	101712242	C	T	27	37
BRCA	TCGA-A2-A04R	FAM155A	SNP	Silent	13	108518417	C	T	19	56
BRCA	TCGA-A2-A04R	TRAF3	SNP	Splice_Site	14	103336784	G	T	44	98
BRCA	TCGA-A2-A04R	OR11H4	SNP	Missense_Mutation	14	20711110	G	T	34	52
BRCA	TCGA-A2-A04R	OR10G2	SNP	Missense_Mutation	14	22102870	C	G	28	60
BRCA	TCGA-A2-A04R	NPAS3	SNP	Missense_Mutation	14	34269056	G	A	37	99
BRCA	TCGA-A2-A04R	FRMD6	SNP	Splice_site	14	52186774	G	T	33	53
BRCA	TCGA-A2-A04R	FMN1	SNP	Missense_Mutation	15	33359400	C	T	27	50
BRCA	TCGA-A2-A04R	ZNF592	SNP	Missense_Mutation	15	85325940	C	A	24	95
BRCA	TCGA-A2-A04R	SYNM	SNP	Missense_Mutation	15	99645494	G	A	39	65
BRCA	TCGA-A2-A04R	GPR179	SNP	Nonsense_Mutation	17	36485058	C	T	21	62
BRCA	TCGA-A2-A04R	MPO	SNP	Missense_Mutation	17	56348081	C	T	23	51
BRCA	TCGA-A2-A04R	B4GALT6	SNP	Silent	18	29211065	G	A	34	57
BRCA	TCGA-A2-A04R	RTTN	SNP	Missense_Mutation	18	67721498	A	G	15	75
BRCA	TCGA-A2-A04R	COL5A3	SNP	Missense_Mutation	19	10097018	C	A	24	52
BRCA	TCGA-A2-A04R	USE1	SNP	Missense_Mutation	19	17330504	G	A	40	96
BRCA	TCGA-A2-A04R	COMP	SNP	Silent	19	18897405	G	A	48	58
BRCA	TCGA-A2-A04R	VSTM2B	SNP	Missense_Mutation	19	30054804	C	A	28	62
BRCA	TCGA-A2-A04R	ZNF571	SNP	Missense_Mutation	19	38055665	C	A	32	59
BRCA	TCGA-A2-A04R	MEGF8	SNP	Missense_Mutation	19	42861080	A	T	6	50
BRCA	TCGA-A2-A04R	ZNF229	SNP	Missense_Mutation	19	44933974	G	A	37	51
BRCA	TCGA-A2-A04R	SIGLEC12	SNP	Silent	19	52004714	G	T	39	50
BRCA	TCGA-A2-A04R	FBN3	SNP	Missense_Mutation	19	8171110	G	C	40	50
BRCA	TCGA-A2-A04R	ZNF562	SNP	Missense_Mutation	19	9768710	C	G	32	62
BRCA	TCGA-A2-A04R	GCC2	SNP	Missense_Mutation	2	109100752	C	G	24	55
BRCA	TCGA-A2-A04R	LRP2	SNP	Silent	2	170177381	C	T	27	44
BRCA	TCGA-A2-A04R	HNRNPA3	SNP	Nonsense_Mutation	2	178080348	C	T	19	68
BRCA	TCGA-A2-A04R	TTN	SNP	Missense_Mutation	2	179457975	C	A	18	100
BRCA	TCGA-A2-A04R	HECW2	SNP	Missense_Mutation	2	197143359	T	C	59	60
BRCA	TCGA-A2-A04R	E2F1	SNP	Missense_Mutation	20	32267630	T	C	49	88
BRCA	TCGA-A2-A04R	GTPBP5	SNP	Missense_Mutation	20	60770921	A	C	3	57
BRCA	TCGA-A2-A04R	OSBPL2	SNP	Missense_Mutation	20	60868880	C	A	23	50
BRCA	TCGA-A2-A04R	KRTAP11-1	SNP	Silent	21	32253424	G	C	33	48
BRCA	TCGA-A2-A04R	COL18A1	DEL	Frame_Shift_Del	21	46888640	GGAGCCTGGCGCC	-	47	52
BRCA	TCGA-A2-A04R	PEX26	SNP	Missense_Mutation	22	18562697	G	A	47	87
BRCA	TCGA-A2-A04R	CELSR1	DEL	Splice_Site	22	46759085	CTGATGGTTCAAATTGAAGTTTCATTA	-	24	58
BRCA	TCGA-A2-A04R	DUSP9	SNP	Missense_Mutation	23	152915602	T	A	56	73
BRCA	TCGA-A2-A04R	PTCHD1	SNP	Missense_Mutation	23	23411288	C	A	20	56
BRCA	TCGA-A2-A04R	IL1RAPL1	SNP	Missense_Mutation	23	29935650	G	T	47	96
BRCA	TCGA-A2-A04R	CASK	SNP	Missense_Mutation	23	41413141	C	G	29	97
BRCA	TCGA-A2-A04R	EFNB1	SNP	Missense_Mutation	23	68060252	C	T	19	92
BRCA	TCGA-A2-A04R	EDA	SNP	Missense_Mutation	23	69247730	C	A	18	78
BRCA	TCGA-A2-A04R	IQCB1	SNP	Missense_Mutation	3	121507139	G	C	45	87
BRCA	TCGA-A2-A04R	SCN11A	SNP	Missense_Mutation	3	38991797	G	T	45	73
BRCA	TCGA-A2-A04R	RNF123	SNP	Missense_Mutation	3	49751012	T	C	59	87
BRCA	TCGA-A2-A04R	CACNA1D	SNP	Missense_Mutation	3	53769505	T	A	50	92
BRCA	TCGA-A2-A04R	CACNA2D3	SNP	Silent	3	54676226	C	T	24	52
BRCA	TCGA-A2-A04R	DNAH12	SNP	Splice_site	3	57456362	T	A	49	92
BRCA	TCGA-A2-A04R	ODZ3	SNP	Silent	4	183594306	C	A	32	85
BRCA	TCGA-A2-A04R	PTTG2	SNP	Silent	4	37962151	C	T	29	48
BRCA	TCGA-A2-A04R	USP46	SNP	Silent	4	53468079	A	G	8	43
BRCA	TCGA-A2-A04R	POLR2B	SNP	Silent	4	57888327	C	T	32	72
BRCA	TCGA-A2-A04R	RAPGEF6	SNP	Splice_site	5	130785738	T	G	62	93
BRCA	TCGA-A2-A04R	SPRY4	SNP	Silent	5	141694299	T	A	59	23
BRCA	TCGA-A2-A04R	FAM114A2	SNP	Missense_Mutation	5	153374519	G	A	46	78
BRCA	TCGA-A2-A04R	DOK3	SNP	Missense_Mutation	5	176931757	A	T	9	71
BRCA	TCGA-A2-A04R	HIST1H2AL	SNP	Missense_Mutation	6	27833360	G	C	33	96
BRCA	TCGA-A2-A04R	POLH	SNP	Splice_Site	6	43578461	G	T	44	96
BRCA	TCGA-A2-A04R	KCND2	SNP	Missense_Mutation	7	119915612	G	T	42	100
BRCA	TCGA-A2-A04R	GIMAP6	SNP	Silent	7	150325167	C	G	21	51
BRCA	TCGA-A2-A04R	GIMAP6	SNP	Silent	7	150325173	G	T	34	48
BRCA	TCGA-A2-A04R	NOS3	SNP	Missense_Mutation	7	150698415	G	A	33	94
BRCA	TCGA-A2-A04R	GRM3	SNP	Missense_Mutation	7	86415883	G	C	40	87
BRCA	TCGA-A2-A04R	ZFPM2	SNP	Missense_Mutation	8	106813723	G	T	36	57
BRCA	TCGA-A2-A04R	FAM167A	SNP	Missense_Mutation	8	11301703	T	A	54	51
BRCA	TCGA-A2-A04R	FAM135B	SNP	Splice_Site	8	139255184	C	A	18	93
BRCA	TCGA-A2-A04R	PLAT	SNP	Missense_Mutation	8	42033530	C	G	19	51
BRCA	TCGA-A2-A04R	NR6A1	SNP	Missense_Mutation	9	127316626	C	G	32	84
BRCA	TCGA-A2-A04R	ADAMTSL1	DNP	Nonsense_Mutation	9	18817201	GG	CT	35	45
BRCA	TCGA-A2-A04R	LOC643827	SNP	Silent	9	65595103	C	A	23	54
BRCA	TCGA-A2-A04U	MTOR	SNP	Silent	1	11217313	C	T	20	62
BRCA	TCGA-A2-A04U	ENSA	SNP	Missense_Mutation	1	150601942	G	T	41	85
BRCA	TCGA-A2-A04U	KIF21B	SNP	Missense_Mutation	1	200967640	A	C	12	91
BRCA	TCGA-A2-A04U	GNPAT	SNP	Missense_Mutation	1	231406515	G	A	46	60
BRCA	TCGA-A2-A04U	HNRNPU	SNP	Missense_Mutation	1	245025803	T	A	56	60
BRCA	TCGA-A2-A04U	USP1	SNP	Missense_Mutation	1	62914231	T	A	55	91
BRCA	TCGA-A2-A04U	CASP1	SNP	Missense_Mutation	11	104905093	T	C	54	74
BRCA	TCGA-A2-A04U	FNBP4	SNP	Missense_Mutation	11	47753019	G	C	48	60
BRCA	TCGA-A2-A04U	SCUBE2	SNP	Silent	11	9074689	G	A	40	54
BRCA	TCGA-A2-A04U	PRDM4	SNP	Missense_Mutation	12	108145695	C	G	30	98
BRCA	TCGA-A2-A04U	SLC2A13	SNP	Missense_Mutation	12	40422247	C	G	29	98
BRCA	TCGA-A2-A04U	BDKRB1	SNP	Missense_Mutation	14	96730708	G	A	37	57
BRCA	TCGA-A2-A04U	FMN1	SNP	Missense_Mutation	15	33261324	T	C	51	48
BRCA	TCGA-A2-A04U	CILP	SNP	Missense_Mutation	15	65490491	T	A	56	54
BRCA	TCGA-A2-A04U	CHD2	SNP	Silent	15	93510696	A	G	2	48
BRCA	TCGA-A2-A04U	ABCC12	SNP	Silent	16	48172233	T	C	55	58
BRCA	TCGA-A2-A04U	CNOT1	SNP	Silent	16	58564183	C	T	21	68
BRCA	TCGA-A2-A04U	SHISA6	SNP	Missense_Mutation	17	11461131	G	A	38	63
BRCA	TCGA-A2-A04U	BZRAP1	SNP	Missense_Mutation	17	56403701	G	A	38	73
BRCA	TCGA-A2-A04U	TP53	DEL	Frame_Shift_Del	17	7579364	C	-	18	58
BRCA	TCGA-A2-A04U	TP53	SNP	Missense_Mutation	17	7579367	T	C	57	64
BRCA	TCGA-A2-A04U	LAMA3	SNP	Missense_Mutation	18	21530014	C	T	21	62
BRCA	TCGA-A2-A04U	TCEB3B	SNP	Missense_Mutation	18	44560555	C	T	19	48
BRCA	TCGA-A2-A04U	NBAS	SNP	Missense_Mutation	2	15372613	C	A	21	54
BRCA	TCGA-A2-A04U	NUP35	SNP	Missense_Mutation	2	184022174	T	G	64	86
BRCA	TCGA-A2-A04U	CCDC108	SNP	Missense_Mutation	2	219894866	C	A	25	71
BRCA	TCGA-A2-A04U	TCF7L1	SNP	Silent	2	85361198	C	G	23	53
BRCA	TCGA-A2-A04U	ADAMTS5	SNP	Missense_Mutation	21	28315764	T	A	50	89
BRCA	TCGA-A2-A04U	ZDHHC8	SNP	Silent	22	20127347	C	T	31	42
BRCA	TCGA-A2-A04U	TNRC6B	SNP	Missense_Mutation	22	40661106	A	T	12	71
BRCA	TCGA-A2-A04U	MAGEB6	SNP	Missense_Mutation	23	26213143	G	C	38	52
BRCA	TCGA-A2-A04U	MXRA5	SNP	Silent	23	3261749	C	T	19	27
BRCA	TCGA-A2-A04U	CXorf22	SNP	Missense_Mutation	23	35984770	A	T	12	53
BRCA	TCGA-A2-A04U	GPR174	SNP	Missense_Mutation	23	78426996	T	A	49	49
BRCA	TCGA-A2-A04U	ATP2B2	DEL	Frame_Shift_Del	3	10417218	GCAC	-	46	97
BRCA	TCGA-A2-A04U	ATP2B2	DEL	Frame_Shift_Del	3	10417224	A	-	15	89
BRCA	TCGA-A2-A04U	ATP2B2	DEL	Frame_Shift_Del	3	10417227	CGGG	-	19	66
BRCA	TCGA-A2-A04U	ATP2B2	DEL	Frame_Shift_Del	3	10417234	GC	-	46	68
BRCA	TCGA-A2-A04U	MUC4	SNP	Silent	3	195513060	G	A	40	46
BRCA	TCGA-A2-A04U	GAR1	SNP	Missense_Mutation	4	110737351	T	G	56	59
BRCA	TCGA-A2-A04U	ZFYVE28	SNP	Silent	4	2321938	G	A	39	44
BRCA	TCGA-A2-A04U	PCDHGB7	SNP	Missense_Mutation	5	140799111	T	G	59	90
BRCA	TCGA-A2-A04U	ENSG00000227087	SNP	Silent	5	79627800	C	T	19	39
BRCA	TCGA-A2-A04U	BACH2	SNP	Missense_Mutation	6	90660232	G	C	40	37
BRCA	TCGA-A2-A04U	MOGAT3	SNP	Missense_Mutation	7	100841573	G	C	45	51
BRCA	TCGA-A2-A04U	SEPT14	SNP	Missense_Mutation	7	55929654	T	C	57	50
BRCA	TCGA-A2-A04U	ABCB1	SNP	Missense_Mutation	7	87145943	C	T	22	100
BRCA	TCGA-A2-A04U	FZD1	SNP	Missense_Mutation	7	90895264	T	A	56	89
BRCA	TCGA-A2-A04U	CPSF4	SNP	Missense_Mutation	7	99045885	A	C	14	91
BRCA	TCGA-A2-A04U	STRBP	SNP	Missense_Mutation	9	125898790	C	T	32	100
BRCA	TCGA-A2-A04U	LMX1B	SNP	Missense_Mutation	9	129458599	G	A	37	98
BRCA	TCGA-A2-A04U	EHMT1	SNP	Missense_Mutation	9	140676797	T	G	55	90
BRCA	TCGA-A2-A04U	VLDLR	SNP	Missense_Mutation	9	2643403	G	A	40	79
BRCA	TCGA-A2-A04U	CREB3	SNP	Missense_Mutation	9	35732815	C	A	24	57
BRCA	TCGA-A2-A04U	FRMPD1	SNP	Silent	9	37708487	C	T	31	30
BRCA	TCGA-A2-A04V	SV2A	SNP	Missense_Mutation	1	149879682	C	T	20	51
BRCA	TCGA-A2-A04V	UBAP2L	SNP	Silent	1	154227320	C	T	29	73
BRCA	TCGA-A2-A04V	KHDRBS1	DEL	In_Frame_Del	1	32495940	GAG	-	45	81
BRCA	TCGA-A2-A04V	MRGPRX3	SNP	Missense_Mutation	11	18158850	C	T	19	47
BRCA	TCGA-A2-A04V	OR5L1	SNP	Missense_Mutation	11	55579499	G	T	36	47
BRCA	TCGA-A2-A04V	ODZ4	SNP	Missense_Mutation	11	78498080	G	T	44	71
BRCA	TCGA-A2-A04V	SPTB	SNP	Missense_Mutation	14	65266520	C	T	19	74
BRCA	TCGA-A2-A04V	ZNF843	SNP	Missense_Mutation	16	31447564	C	T	23	48
BRCA	TCGA-A2-A04V	CHD9	SNP	Missense_Mutation	16	53190227	T	G	62	57
BRCA	TCGA-A2-A04V	ZDHHC1	SNP	Missense_Mutation	16	67432541	A	C	11	75
BRCA	TCGA-A2-A04V	KANSL1	DEL	Frame_Shift_Del	17	44110510	CA	-	29	85
BRCA	TCGA-A2-A04V	MIF4GD	DEL	Frame_Shift_Del	17	73264205	AC	-	2	88
BRCA	TCGA-A2-A04V	APLP1	SNP	Silent	19	36365645	G	A	39	52
BRCA	TCGA-A2-A04V	GRIK5	SNP	Missense_Mutation	19	42566998	A	T	12	91
BRCA	TCGA-A2-A04V	ZXDA	SNP	Silent	23	57935544	C	A	29	49
BRCA	TCGA-A2-A04V	PIK3CA	SNP	Splice_site	3	178917478	G	A	44	99
BRCA	TCGA-A2-A04V	TAPT1	SNP	Silent	4	16193020	G	A	39	46
BRCA	TCGA-A2-A04V	HEATR7B2	SNP	Silent	5	41058282	G	A	40	44
BRCA	TCGA-A2-A04V	ACTBL2	SNP	Missense_Mutation	5	56777892	C	G	32	94
BRCA	TCGA-A2-A04V	TRMT12	SNP	Silent	8	125463552	T	C	55	43
BRCA	TCGA-A2-A04V	PLEKHA2	INS	Frame_Shift_Ins	8	38809720	-	C	58	50
BRCA	TCGA-A2-A04V	TMEM246	SNP	Missense_Mutation	9	104238634	G	T	44	57
BRCA	TCGA-A2-A04V	FANCC	SNP	Missense_Mutation	9	98011555	C	A	32	53
BRCA	TCGA-A2-A04W	THBS3	SNP	Silent	1	155167681	G	C	34	57
BRCA	TCGA-A2-A04W	ABL2	SNP	Missense_Mutation	1	179095520	C	A	32	95
BRCA	TCGA-A2-A04W	C1orf222	SNP	Missense_Mutation	1	1900265	C	T	29	57
BRCA	TCGA-A2-A04W	CR1	SNP	Missense_Mutation	1	207793269	G	A	41	49
BRCA	TCGA-A2-A04W	USH2A	SNP	Missense_Mutation	1	216246562	T	C	55	77
BRCA	TCGA-A2-A04W	USH2A	SNP	Silent	1	216498908	G	A	45	50
BRCA	TCGA-A2-A04W	RYR2	SNP	Missense_Mutation	1	237897015	G	A	41	98
BRCA	TCGA-A2-A04W	EPB41	SNP	Missense_Mutation	1	29344900	C	G	23	85
BRCA	TCGA-A2-A04W	LPPR5	SNP	Missense_Mutation	1	99358642	C	T	27	84
BRCA	TCGA-A2-A04W	TRIM8	SNP	Missense_Mutation	10	104416924	C	G	30	97
BRCA	TCGA-A2-A04W	GTPBP4	SNP	Silent	10	1046775	C	G	32	63
BRCA	TCGA-A2-A04W	ARMC4	SNP	Missense_Mutation	10	28273951	G	A	45	61
BRCA	TCGA-A2-A04W	VSTM4	SNP	Splice_site	10	50294067	G	C	45	54
BRCA	TCGA-A2-A04W	EGR2	SNP	Missense_Mutation	10	64573184	C	T	31	97
BRCA	TCGA-A2-A04W	MMS19	SNP	Nonsense_Mutation	10	99222427	G	T	45	78
BRCA	TCGA-A2-A04W	NPAT	SNP	Missense_Mutation	11	108047018	C	T	29	74
BRCA	TCGA-A2-A04W	OR10G4	SNP	Missense_Mutation	11	123887198	C	A	25	53
BRCA	TCGA-A2-A04W	OR52N5	SNP	Missense_Mutation	11	5799262	G	C	45	62
BRCA	TCGA-A2-A04W	ACER3	SNP	Splice_site	11	76726161	G	C	35	83
BRCA	TCGA-A2-A04W	MYBPC1	SNP	Missense_Mutation	12	102040663	G	C	33	82
BRCA	TCGA-A2-A04W	GNPTAB	SNP	Nonsense_Mutation	12	102158936	G	A	37	77
BRCA	TCGA-A2-A04W	TAS2R9	SNP	Missense_Mutation	12	10962482	C	T	32	57
BRCA	TCGA-A2-A04W	ATXN2	SNP	Missense_Mutation	12	111991992	C	T	29	92
BRCA	TCGA-A2-A04W	SBNO1	SNP	Silent	12	123795660	C	G	29	52
BRCA	TCGA-A2-A04W	NACA	SNP	Missense_Mutation	12	57115051	C	G	30	50
BRCA	TCGA-A2-A04W	CHD4	SNP	Nonsense_Mutation	12	6688060	C	A	30	74
BRCA	TCGA-A2-A04W	PTPRQ	SNP	Missense_Mutation	12	81013271	A	G	12	83
BRCA	TCGA-A2-A04W	NUFIP1	SNP	Missense_Mutation	13	45540046	C	G	29	75
BRCA	TCGA-A2-A04W	LMO7	SNP	Missense_Mutation	13	76430698	C	T	29	81
BRCA	TCGA-A2-A04W	C15orf55	SNP	Missense_Mutation	15	34640323	C	T	21	60
BRCA	TCGA-A2-A04W	CASC5	SNP	Missense_Mutation	15	40914718	G	A	45	51
BRCA	TCGA-A2-A04W	TMC5	DEL	Frame_Shift_Del	16	19501758	CT	-	24	62
BRCA	TCGA-A2-A04W	EDC4	SNP	Silent	16	67913012	C	A	23	31
BRCA	TCGA-A2-A04W	CDH15	SNP	Missense_Mutation	16	89254650	G	A	38	57
BRCA	TCGA-A2-A04W	PLXDC1	SNP	Missense_Mutation	17	37263689	C	T	29	69
BRCA	TCGA-A2-A04W	KIF1C	SNP	Silent	17	4906086	C	T	31	48
BRCA	TCGA-A2-A04W	TP53	SNP	Missense_Mutation	17	7577124	C	T	18	81
BRCA	TCGA-A2-A04W	TBCD	SNP	Missense_Mutation	17	80767627	G	A	45	88
BRCA	TCGA-A2-A04W	TTC39C	SNP	Silent	18	21712496	C	T	30	64
BRCA	TCGA-A2-A04W	KCTD1	SNP	Missense_Mutation	18	24035810	C	G	30	99
BRCA	TCGA-A2-A04W	LOXHD1	SNP	Silent	18	44104553	C	T	22	53
BRCA	TCGA-A2-A04W	YES1	SNP	Missense_Mutation	18	756691	G	A	45	72
BRCA	TCGA-A2-A04W	DDX49	SNP	Missense_Mutation	19	19035754	C	T	32	73
BRCA	TCGA-A2-A04W	ZNF296	SNP	Missense_Mutation	19	45574867	C	T	31	50
BRCA	TCGA-A2-A04W	IGLON5	SNP	Nonsense_Mutation	19	51831946	C	G	29	75
BRCA	TCGA-A2-A04W	ZNF808	SNP	Missense_Mutation	19	53057385	A	G	13	58
BRCA	TCGA-A2-A04W	NLRP13	SNP	Nonsense_Mutation	19	56423843	G	C	45	48
BRCA	TCGA-A2-A04W	NLRP13	SNP	Missense_Mutation	19	56424232	G	C	45	45
BRCA	TCGA-A2-A04W	ZNF667	SNP	Nonsense_Mutation	19	56953658	G	A	45	50
BRCA	TCGA-A2-A04W	ZNF772	SNP	Missense_Mutation	19	57984669	C	A	30	54
BRCA	TCGA-A2-A04W	ASNSD1	SNP	Missense_Mutation	2	190535312	C	G	32	55
BRCA	TCGA-A2-A04W	CRYGC	SNP	Nonsense_Mutation	2	208993007	G	A	47	59
BRCA	TCGA-A2-A04W	PTH2R	SNP	Missense_Mutation	2	209302289	G	A	41	94
BRCA	TCGA-A2-A04W	CTDSP1	SNP	Missense_Mutation	2	219269049	G	C	45	97
BRCA	TCGA-A2-A04W	CAD	SNP	Missense_Mutation	2	27449820	G	A	45	94
BRCA	TCGA-A2-A04W	SRBD1	SNP	Silent	2	45789854	C	T	23	50
BRCA	TCGA-A2-A04W	STON1-GTF2A1L	SNP	Missense_Mutation	2	48808551	C	G	32	71
BRCA	TCGA-A2-A04W	DYSF	SNP	Splice_Site	2	71871094	G	A	35	99
BRCA	TCGA-A2-A04W	CNGA3	SNP	Silent	2	99013187	G	A	33	61
BRCA	TCGA-A2-A04W	OPRL1	SNP	Missense_Mutation	20	62729457	C	G	32	99
BRCA	TCGA-A2-A04W	C21orf91	SNP	Missense_Mutation	21	19190578	C	A	17	67
BRCA	TCGA-A2-A04W	SOD1	SNP	Missense_Mutation	21	33039646	C	G	32	49
BRCA	TCGA-A2-A04W	ISX	SNP	Splice_Site	22	35480375	G	C	33	93
BRCA	TCGA-A2-A04W	ZIC3	SNP	Missense_Mutation	23	136652162	C	G	32	72
BRCA	TCGA-A2-A04W	GABRQ	SNP	Silent	23	151815558	C	T	31	38
BRCA	TCGA-A2-A04W	DCAF8L2	SNP	Silent	23	27765792	G	A	33	55
BRCA	TCGA-A2-A04W	IL1RAPL1	SNP	Missense_Mutation	23	29301288	C	T	23	60
BRCA	TCGA-A2-A04W	FAM47A	SNP	Silent	23	34150228	G	A	40	46
BRCA	TCGA-A2-A04W	KIAA2022	SNP	Missense_Mutation	23	73963037	G	A	34	73
BRCA	TCGA-A2-A04W	TRIM42	SNP	Missense_Mutation	3	140401809	G	A	37	54
BRCA	TCGA-A2-A04W	ATR	SNP	Missense_Mutation	3	142172007	G	A	38	68
BRCA	TCGA-A2-A04W	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A04W	MUC4	SNP	Silent	3	195490502	G	A	37	49
BRCA	TCGA-A2-A04W	ZDHHC3	SNP	Missense_Mutation	3	44959580	T	A	55	53
BRCA	TCGA-A2-A04W	FAT4	SNP	Missense_Mutation	4	126412418	C	G	32	81
BRCA	TCGA-A2-A04W	GK3P	SNP	Missense_Mutation	4	166200610	G	C	33	75
BRCA	TCGA-A2-A04W	HTT	SNP	Missense_Mutation	4	3224137	G	A	45	100
BRCA	TCGA-A2-A04W	SPINK2	SNP	Missense_Mutation	4	57677909	C	G	17	68
BRCA	TCGA-A2-A04W	TMPRSS11E	SNP	Missense_Mutation	4	69334622	C	A	21	50
BRCA	TCGA-A2-A04W	GRID2	SNP	Missense_Mutation	4	94031970	G	A	33	98
BRCA	TCGA-A2-A04W	UNC5C	SNP	Missense_Mutation	4	96123917	C	T	20	87
BRCA	TCGA-A2-A04W	DNAH5	SNP	Silent	5	13708337	G	A	45	57
BRCA	TCGA-A2-A04W	PCDHA7	SNP	Missense_Mutation	5	140214152	C	T	27	66
BRCA	TCGA-A2-A04W	PCDHB7	SNP	Missense_Mutation	5	140552525	G	A	41	80
BRCA	TCGA-A2-A04W	PCDHGB7	SNP	Missense_Mutation	5	140798033	G	A	33	100
BRCA	TCGA-A2-A04W	ATP10B	SNP	Missense_Mutation	5	160067594	C	G	29	99
BRCA	TCGA-A2-A04W	WWC1	SNP	Missense_Mutation	5	167855767	G	A	46	59
BRCA	TCGA-A2-A04W	ULBP3	SNP	Missense_Mutation	6	150387233	C	G	29	53
BRCA	TCGA-A2-A04W	HIST1H2AK	SNP	Missense_Mutation	6	27805901	C	T	31	81
BRCA	TCGA-A2-A04W	BAI3	SNP	Missense_Mutation	6	70070933	G	C	46	53
BRCA	TCGA-A2-A04W	MDN1	SNP	Missense_Mutation	6	90371881	C	G	32	52
BRCA	TCGA-A2-A04W	MUC17	SNP	Missense_Mutation	7	100685492	C	T	30	37
BRCA	TCGA-A2-A04W	SMO	SNP	Silent	7	128850818	G	A	33	55
BRCA	TCGA-A2-A04W	CCT8L1	SNP	Nonsense_Mutation	7	152144042	G	A	47	74
BRCA	TCGA-A2-A04W	POU6F2	SNP	Silent	7	39503850	G	C	45	78
BRCA	TCGA-A2-A04W	TNRC18	SNP	Silent	7	5399197	C	T	29	57
BRCA	TCGA-A2-A04W	SEMA3C	SNP	Nonsense_Mutation	7	80418802	C	A	30	88
BRCA	TCGA-A2-A04W	SEMA3E	SNP	Silent	7	83119463	G	A	45	59
BRCA	TCGA-A2-A04W	SEMA3A	SNP	Missense_Mutation	7	83634727	G	C	45	84
BRCA	TCGA-A2-A04W	RGS22	SNP	Missense_Mutation	8	101092487	G	C	33	61
BRCA	TCGA-A2-A04W	WDR67	SNP	Silent	8	124132400	C	T	32	80
BRCA	TCGA-A2-A04W	TG	SNP	Missense_Mutation	8	133945871	G	T	45	76
BRCA	TCGA-A2-A04W	PLEC	SNP	Missense_Mutation	8	145001160	C	G	32	52
BRCA	TCGA-A2-A04W	GINS4	SNP	Silent	8	41397268	G	A	38	45
BRCA	TCGA-A2-A04W	DNAJC25-GNG10	SNP	Missense_Mutation	9	114429136	G	C	33	71
BRCA	TCGA-A2-A04W	UBAC1	SNP	Silent	9	138845595	G	C	41	57
BRCA	TCGA-A2-A04W	SLC34A3	SNP	Nonsense_Mutation	9	140126583	C	T	29	54
BRCA	TCGA-A2-A04W	FREM1	SNP	Silent	9	14868949	C	T	31	46
BRCA	TCGA-A2-A04W	TAF1L	SNP	Missense_Mutation	9	32634886	A	G	5	71
BRCA	TCGA-A2-A04X	UBE2Q1	DEL	Frame_Shift_Del	1	154528347	CTTT	-	24	73
BRCA	TCGA-A2-A04X	ITGB1	SNP	Silent	10	33217185	T	C	59	41
BRCA	TCGA-A2-A04X	WIF1	SNP	Missense_Mutation	12	65514331	C	T	29	93
BRCA	TCGA-A2-A04X	EEA1	SNP	Missense_Mutation	12	93226389	C	G	32	94
BRCA	TCGA-A2-A04X	CYSLTR2	SNP	Missense_Mutation	13	49281015	G	A	42	46
BRCA	TCGA-A2-A04X	IPO4	SNP	Missense_Mutation	14	24656970	G	A	45	63
BRCA	TCGA-A2-A04X	FANCM	DEL	In_Frame_Del	14	45658083	GAA	-	45	69
BRCA	TCGA-A2-A04X	DNAH3	SNP	Missense_Mutation	16	20974834	C	T	30	70
BRCA	TCGA-A2-A04X	ZNF213	SNP	Silent	16	3191255	C	T	31	48
BRCA	TCGA-A2-A04X	SARM1	SNP	Nonsense_Mutation	17	26723195	G	T	41	84
BRCA	TCGA-A2-A04X	VPS53	SNP	Silent	17	559191	C	T	29	46
BRCA	TCGA-A2-A04X	DNAH17	SNP	Missense_Mutation	17	76556902	C	A	30	78
BRCA	TCGA-A2-A04X	GTPBP3	SNP	Missense_Mutation	19	17448438	G	C	41	64
BRCA	TCGA-A2-A04X	LRP2	SNP	Missense_Mutation	2	170060630	C	G	23	100
BRCA	TCGA-A2-A04X	FBXO11	SNP	Missense_Mutation	2	48047527	C	T	29	100
BRCA	TCGA-A2-A04X	ZNF840	SNP	Missense_Mutation	20	45093521	A	G	2	55
BRCA	TCGA-A2-A04X	IL10RB	SNP	Missense_Mutation	21	34652113	C	T	27	60
BRCA	TCGA-A2-A04X	SHROOM4	SNP	Silent	23	50376535	G	A	47	51
BRCA	TCGA-A2-A04X	NNT	SNP	Missense_Mutation	5	43704416	C	G	32	71
BRCA	TCGA-A2-A04X	WTAP	SNP	Silent	6	160169354	G	T	47	100
BRCA	TCGA-A2-A04X	LRRC16A	SNP	Silent	6	25600890	G	A	41	47
BRCA	TCGA-A2-A04X	PTK7	SNP	Silent	6	43099859	G	A	33	56
BRCA	TCGA-A2-A04X	CLIC5	SNP	Missense_Mutation	6	46047880	C	T	29	52
BRCA	TCGA-A2-A04X	GSTA5	SNP	Silent	6	52701123	G	A	40	56
BRCA	TCGA-A2-A04X	MGAM	SNP	Missense_Mutation	7	141780655	C	T	30	58
BRCA	TCGA-A2-A04X	STK31	SNP	Missense_Mutation	7	23825188	G	C	40	88
BRCA	TCGA-A2-A04X	COL1A2	SNP	Missense_Mutation	7	94043006	C	T	28	77
BRCA	TCGA-A2-A04X	CA9	SNP	Missense_Mutation	9	35674290	G	T	41	79
BRCA	TCGA-A2-A04X	OGN	SNP	Missense_Mutation	9	95147960	C	G	30	73
BRCA	TCGA-A2-A04Y	DVL1	SNP	Silent	1	1275142	C	A	25	55
BRCA	TCGA-A2-A04Y	NBPF14	SNP	Missense_Mutation	1	148017589	G	A	41	46
BRCA	TCGA-A2-A04Y	VPS72	SNP	Silent	1	151150560	G	A	39	33
BRCA	TCGA-A2-A04Y	WDR64	SNP	Missense_Mutation	1	241823900	G	C	33	79
BRCA	TCGA-A2-A04Y	AHDC1	SNP	Missense_Mutation	1	27876673	T	G	59	87
BRCA	TCGA-A2-A04Y	GJB4	SNP	Missense_Mutation	1	35227586	A	C	6	48
BRCA	TCGA-A2-A04Y	C1orf50	SNP	Missense_Mutation	1	43232996	C	T	26	45
BRCA	TCGA-A2-A04Y	PIP4K2A	SNP	Missense_Mutation	10	22880688	G	T	43	100
BRCA	TCGA-A2-A04Y	ZNF438	DEL	In_Frame_Del	10	31138771	CTGGCT	-	28	51
BRCA	TCGA-A2-A04Y	ARNTL	DEL	Splice_site	11	13375994	CAGTA	-	21	74
BRCA	TCGA-A2-A04Y	SOX6	SNP	Splice_site	11	16007966	C	T	30	100
BRCA	TCGA-A2-A04Y	ATHL1	SNP	Missense_Mutation	11	289844	A	C	6	43
BRCA	TCGA-A2-A04Y	NR1H4	SNP	Missense_Mutation	12	100928730	G	C	33	98
BRCA	TCGA-A2-A04Y	IPO8	SNP	Missense_Mutation	12	30822138	C	G	29	97
BRCA	TCGA-A2-A04Y	AP1G2	SNP	Missense_Mutation	14	24035597	C	T	24	91
BRCA	TCGA-A2-A04Y	BDKRB2	SNP	Missense_Mutation	14	96707798	G	T	38	53
BRCA	TCGA-A2-A04Y	UNC45A	SNP	Missense_Mutation	15	91479403	C	T	22	60
BRCA	TCGA-A2-A04Y	DYNC1LI2	SNP	Missense_Mutation	16	66766320	T	C	49	79
BRCA	TCGA-A2-A04Y	P2RX5	SNP	Missense_Mutation	17	3592830	C	T	19	31
BRCA	TCGA-A2-A04Y	ARHGAP23	SNP	Missense_Mutation	17	36646353	C	A	19	31
BRCA	TCGA-A2-A04Y	RNF213	SNP	Missense_Mutation	17	78346457	A	C	14	72
BRCA	TCGA-A2-A04Y	PAFAH1B3	SNP	Missense_Mutation	19	42801429	T	G	59	53
BRCA	TCGA-A2-A04Y	RGPD4	SNP	Missense_Mutation	2	108496541	C	A	25	81
BRCA	TCGA-A2-A04Y	NEB	SNP	Splice_Site	2	152420119	C	A	18	98
BRCA	TCGA-A2-A04Y	PXDN	INS	Frame_Shift_Ins	2	1684022	-	AT	41	83
BRCA	TCGA-A2-A04Y	CALCRL	SNP	Missense_Mutation	2	188211077	C	G	30	80
BRCA	TCGA-A2-A04Y	CPXCR1	SNP	Missense_Mutation	23	88008777	C	T	25	40
BRCA	TCGA-A2-A04Y	HRH1	SNP	Missense_Mutation	3	11301157	C	T	31	59
BRCA	TCGA-A2-A04Y	LDB2	SNP	Missense_Mutation	4	16597371	G	T	44	71
BRCA	TCGA-A2-A04Y	KIAA0232	DEL	Frame_Shift_Del	4	6863013	A	-	9	66
BRCA	TCGA-A2-A04Y	ADGB	SNP	Missense_Mutation	6	147047304	G	A	45	81
BRCA	TCGA-A2-A04Y	TIAM2	DEL	In_Frame_Del	6	155571033	AGA	-	7	92
BRCA	TCGA-A2-A04Y	CCDC167	SNP	Missense_Mutation	6	37452634	A	C	10	63
BRCA	TCGA-A2-A04Y	GIGYF1	SNP	Silent	7	100285619	G	A	40	47
BRCA	TCGA-A2-A04Y	CALU	SNP	Missense_Mutation	7	128388708	A	G	3	76
BRCA	TCGA-A2-A04Y	ENPP2	SNP	Missense_Mutation	8	120594788	T	C	51	91
BRCA	TCGA-A2-A04Y	EGR3	DEL	Frame_Shift_Del	8	22548865	G	-	47	58
BRCA	TCGA-A2-A04Y	TNC	SNP	Missense_Mutation	9	117838681	T	C	60	72
BRCA	TCGA-A2-A04Y	CAMSAP1	SNP	Missense_Mutation	9	138710894	C	A	28	56
BRCA	TCGA-A2-A04Y	PCSK5	SNP	Nonstop_Mutation	9	78790217	A	C	15	45
BRCA	TCGA-A2-A04Y	NOL8	SNP	Silent	9	95077554	A	C	11	52
BRCA	TCGA-A2-A0CL	ZC3H12C	SNP	Missense_Mutation	11	110035921	C	T	23	85
BRCA	TCGA-A2-A0CL	MDM2	SNP	Missense_Mutation	12	69233129	C	T	31	79
BRCA	TCGA-A2-A0CL	ATN1	SNP	Missense_Mutation	12	7045461	C	T	24	59
BRCA	TCGA-A2-A0CL	TPPP2	SNP	Missense_Mutation	14	21500171	A	G	10	61
BRCA	TCGA-A2-A0CL	ARHGAP23	SNP	Missense_Mutation	17	36626102	G	A	38	70
BRCA	TCGA-A2-A0CL	MRC2	SNP	Nonsense_Mutation	17	60765922	C	A	31	79
BRCA	TCGA-A2-A0CL	KLK12	SNP	Silent	19	51535184	G	A	39	12
BRCA	TCGA-A2-A0CL	REV1	SNP	Nonsense_Mutation	2	100046338	G	C	45	96
BRCA	TCGA-A2-A0CL	SCN2A	SNP	Missense_Mutation	2	166179704	A	T	10	69
BRCA	TCGA-A2-A0CL	C20orf72	SNP	Nonsense_Mutation	20	17970619	G	A	41	86
BRCA	TCGA-A2-A0CL	PYGB	SNP	Missense_Mutation	20	25252034	C	T	29	95
BRCA	TCGA-A2-A0CL	POFUT2	SNP	Silent	21	46705636	G	A	45	64
BRCA	TCGA-A2-A0CL	CARD10	SNP	Nonsense_Mutation	22	37912135	G	A	45	76
BRCA	TCGA-A2-A0CL	ENOX2	SNP	Missense_Mutation	23	129769019	A	C	3	75
BRCA	TCGA-A2-A0CL	HDX	SNP	Missense_Mutation	23	83723943	C	T	19	84
BRCA	TCGA-A2-A0CL	SLC2A2	SNP	Missense_Mutation	3	170736326	A	G	11	49
BRCA	TCGA-A2-A0CL	CEP135	SNP	Nonsense_Mutation	4	56883874	C	T	31	53
BRCA	TCGA-A2-A0CL	MEP1A	SNP	Silent	6	46803035	G	A	45	51
BRCA	TCGA-A2-A0CL	C9orf114	SNP	Missense_Mutation	9	131587304	C	G	30	69
BRCA	TCGA-A2-A0CM	LOC100131261	SNP	Missense_Mutation	1	118320960	G	T	46	65
BRCA	TCGA-A2-A0CM	PRUNE	SNP	Missense_Mutation	1	150999720	G	A	45	87
BRCA	TCGA-A2-A0CM	YY1AP1	SNP	Missense_Mutation	1	155646348	C	G	32	66
BRCA	TCGA-A2-A0CM	SPTA1	SNP	Missense_Mutation	1	158589080	C	A	32	62
BRCA	TCGA-A2-A0CM	SZT2	SNP	Missense_Mutation	1	43908878	G	C	33	79
BRCA	TCGA-A2-A0CM	SMNDC1	SNP	Silent	10	112057441	G	A	39	48
BRCA	TCGA-A2-A0CM	MGMT	SNP	Nonsense_Mutation	10	131565072	C	A	26	55
BRCA	TCGA-A2-A0CM	ZNF22	SNP	Missense_Mutation	10	45499229	C	T	22	82
BRCA	TCGA-A2-A0CM	EXPH5	SNP	Silent	11	108381164	C	T	32	52
BRCA	TCGA-A2-A0CM	OR4C12	SNP	Silent	11	50003441	C	T	29	56
BRCA	TCGA-A2-A0CM	ODZ4	SNP	Missense_Mutation	11	78399254	C	T	27	99
BRCA	TCGA-A2-A0CM	C12orf71	SNP	Missense_Mutation	12	27235309	C	A	24	57
BRCA	TCGA-A2-A0CM	BICD1	SNP	Missense_Mutation	12	32520614	G	A	34	94
BRCA	TCGA-A2-A0CM	IFT88	SNP	Missense_Mutation	13	21173632	G	T	33	78
BRCA	TCGA-A2-A0CM	BMP4	SNP	Nonsense_Mutation	14	54416966	G	T	42	77
BRCA	TCGA-A2-A0CM	SLTM	SNP	Silent	15	59205704	T	A	64	60
BRCA	TCGA-A2-A0CM	ZNF689	SNP	Missense_Mutation	16	30615937	C	T	23	64
BRCA	TCGA-A2-A0CM	CDH11	SNP	Missense_Mutation	16	65032473	G	T	41	95
BRCA	TCGA-A2-A0CM	IRF8	SNP	Silent	16	85954813	C	G	32	56
BRCA	TCGA-A2-A0CM	LOC100288795	INS	In_Frame_Ins	17	4544978	-	TGA	41	50
BRCA	TCGA-A2-A0CM	TP53	DEL	Frame_Shift_Del	17	7578239	C	-	30	51
BRCA	TCGA-A2-A0CM	CARD14	SNP	Silent	17	78171932	C	T	32	44
BRCA	TCGA-A2-A0CM	ZCCHC2	SNP	Missense_Mutation	18	60242018	C	G	32	68
BRCA	TCGA-A2-A0CM	SYDE1	SNP	Missense_Mutation	19	15222237	C	G	29	78
BRCA	TCGA-A2-A0CM	FAM129C	SNP	Missense_Mutation	19	17664329	C	T	30	51
BRCA	TCGA-A2-A0CM	ZNF77	SNP	Missense_Mutation	19	2933696	G	C	45	38
BRCA	TCGA-A2-A0CM	TTYH1	SNP	Missense_Mutation	19	54946801	C	T	32	69
BRCA	TCGA-A2-A0CM	ADA	SNP	Splice_site	20	43257689	C	T	27	93
BRCA	TCGA-A2-A0CM	CBS	SNP	Missense_Mutation	21	44479399	C	T	28	71
BRCA	TCGA-A2-A0CM	ATP1B3	SNP	Nonsense_Mutation	3	141622516	C	G	29	75
BRCA	TCGA-A2-A0CM	GMPS	SNP	Missense_Mutation	3	155623998	G	C	33	100
BRCA	TCGA-A2-A0CM	CCDC39	SNP	Nonsense_Mutation	3	180359800	G	A	45	83
BRCA	TCGA-A2-A0CM	FREM3	SNP	Missense_Mutation	4	144619575	C	T	32	79
BRCA	TCGA-A2-A0CM	CDKL2	SNP	Nonsense_Mutation	4	76529120	G	A	45	88
BRCA	TCGA-A2-A0CM	HPSE	SNP	Missense_Mutation	4	84255926	G	T	38	53
BRCA	TCGA-A2-A0CM	CDC20B	SNP	Silent	5	54436170	G	C	33	50
BRCA	TCGA-A2-A0CM	THBS4	SNP	Missense_Mutation	5	79366973	G	A	33	100
BRCA	TCGA-A2-A0CM	ELL2	SNP	Missense_Mutation	5	95236466	C	G	32	58
BRCA	TCGA-A2-A0CM	PRSS35	SNP	Missense_Mutation	6	84234145	G	A	37	88
BRCA	TCGA-A2-A0CM	PPP1R9A	SNP	Silent	7	94855425	A	G	3	55
BRCA	TCGA-A2-A0CM	KIAA0146	SNP	Silent	8	48614556	G	T	39	50
BRCA	TCGA-A2-A0CM	CHD7	SNP	Silent	8	61693870	C	A	21	53
BRCA	TCGA-A2-A0CM	PRDM14	INS	Splice_site	8	70971077	-	G	54	71
BRCA	TCGA-A2-A0CM	TRIQK	SNP	Missense_Mutation	8	93929213	C	T	18	87
BRCA	TCGA-A2-A0CM	COBRA1	DEL	In_Frame_Del	9	140166539	CCTTTGGCGACTTGG	-	18	79
BRCA	TCGA-A2-A0CM	IFNA2	SNP	Missense_Mutation	9	21385235	G	T	35	58
BRCA	TCGA-A2-A0CM	SLC28A3	SNP	Missense_Mutation	9	86909149	C	T	25	69
BRCA	TCGA-A2-A0CP	NID1	SNP	Missense_Mutation	1	236201470	C	T	27	44
BRCA	TCGA-A2-A0CP	METTL7A	SNP	Missense_Mutation	12	51323842	C	T	26	68
BRCA	TCGA-A2-A0CP	ENSG00000234719	DEL	In_Frame_Del	16	12021296	TGG	-	51	51
BRCA	TCGA-A2-A0CP	CMIP	DEL	Frame_Shift_Del	16	81739192	GC	-	42	83
BRCA	TCGA-A2-A0CP	KRTAP4-9	SNP	Missense_Mutation	17	39262140	C	A	30	63
BRCA	TCGA-A2-A0CP	BAHCC1	DEL	Frame_Shift_Del	17	79412530	C	-	30	57
BRCA	TCGA-A2-A0CP	CLHC1	SNP	Missense_Mutation	2	55408757	C	A	30	61
BRCA	TCGA-A2-A0CP	PCIF1	SNP	Silent	20	44575922	G	A	39	43
BRCA	TCGA-A2-A0CP	MSL3	SNP	Missense_Mutation	23	11783689	C	T	27	73
BRCA	TCGA-A2-A0CP	AWAT2	SNP	Missense_Mutation	23	69262054	C	T	23	48
BRCA	TCGA-A2-A0CP	PIK3CA	SNP	Missense_Mutation	3	178938934	G	A	45	98
BRCA	TCGA-A2-A0CP	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A0CP	MYRIP	SNP	Missense_Mutation	3	40275393	T	C	55	80
BRCA	TCGA-A2-A0CP	MRFAP1L1	SNP	Missense_Mutation	4	6711224	C	T	31	55
BRCA	TCGA-A2-A0CP	MAP3K1	SNP	Nonsense_Mutation	5	56170973	G	T	41	94
BRCA	TCGA-A2-A0CP	BTN3A2	SNP	Silent	6	26368860	C	T	24	52
BRCA	TCGA-A2-A0CP	POLR1C	SNP	Splice_site	6	43484915	A	G	4	86
BRCA	TCGA-A2-A0CP	SNTG1	SNP	Silent	8	51449300	C	T	27	54
BRCA	TCGA-A2-A0CP	GAPVD1	SNP	Missense_Mutation	9	128117999	G	A	47	100
BRCA	TCGA-A2-A0CQ	SLC9C2	SNP	Silent	1	173542380	G	A	36	52
BRCA	TCGA-A2-A0CQ	PADI4	SNP	Missense_Mutation	1	17668843	C	T	27	84
BRCA	TCGA-A2-A0CQ	SLC9A1	SNP	Silent	1	27436074	G	C	33	64
BRCA	TCGA-A2-A0CQ	MACF1	SNP	Missense_Mutation	1	39853331	G	C	36	52
BRCA	TCGA-A2-A0CQ	AGRN	SNP	Silent	1	985656	C	T	19	39
BRCA	TCGA-A2-A0CQ	DIP2C	SNP	Silent	10	323355	G	A	45	80
BRCA	TCGA-A2-A0CQ	ENSG00000181943	SNP	Missense_Mutation	11	55259570	G	T	41	55
BRCA	TCGA-A2-A0CQ	CACNA1C	SNP	Silent	12	2797846	C	T	27	63
BRCA	TCGA-A2-A0CQ	OR6C2	SNP	Silent	12	55846918	A	G	8	49
BRCA	TCGA-A2-A0CQ	AKAP11	SNP	Missense_Mutation	13	42875568	G	A	36	62
BRCA	TCGA-A2-A0CQ	TRIP11	SNP	Missense_Mutation	14	92499550	T	C	52	46
BRCA	TCGA-A2-A0CQ	CTCF	SNP	Missense_Mutation	16	67654645	C	G	30	100
BRCA	TCGA-A2-A0CQ	NEK8	SNP	Missense_Mutation	17	27068449	G	C	47	99
BRCA	TCGA-A2-A0CQ	MFSD11	SNP	Silent	17	74772590	C	T	27	41
BRCA	TCGA-A2-A0CQ	ENSG00000237368	SNP	Silent	18	14156234	A	G	13	50
BRCA	TCGA-A2-A0CQ	ZNF878	SNP	Silent	19	12164066	C	T	22	44
BRCA	TCGA-A2-A0CQ	PALM3	SNP	Silent	19	14165287	C	T	23	31
BRCA	TCGA-A2-A0CQ	UPF1	SNP	Missense_Mutation	19	18965708	C	T	19	82
BRCA	TCGA-A2-A0CQ	ZNF578	SNP	Missense_Mutation	19	53014601	T	A	58	47
BRCA	TCGA-A2-A0CQ	DOCK10	SNP	Missense_Mutation	2	225729785	C	T	20	81
BRCA	TCGA-A2-A0CQ	STARD7	SNP	Missense_Mutation	2	96861112	G	A	43	90
BRCA	TCGA-A2-A0CQ	CLTCL1	SNP	Missense_Mutation	22	19203720	G	A	37	93
BRCA	TCGA-A2-A0CQ	AFF2	SNP	Missense_Mutation	23	147744200	C	A	32	69
BRCA	TCGA-A2-A0CQ	PTCHD1	SNP	Missense_Mutation	23	23397729	A	T	12	86
BRCA	TCGA-A2-A0CQ	BOC	SNP	Silent	3	113005658	C	T	22	46
BRCA	TCGA-A2-A0CQ	PLXNA1	SNP	Splice_Site	3	126736736	G	A	44	97
BRCA	TCGA-A2-A0CQ	COL6A5	SNP	Missense_Mutation	3	130116502	C	T	22	62
BRCA	TCGA-A2-A0CQ	IQCG	SNP	Missense_Mutation	3	197618393	A	G	4	62
BRCA	TCGA-A2-A0CQ	NDNF	SNP	Missense_Mutation	4	121966920	G	A	39	64
BRCA	TCGA-A2-A0CQ	PIK3R1	INS	In_Frame_Ins	5	67589607	-	AGAAAAAAGTCG	5	89
BRCA	TCGA-A2-A0CQ	MEPCE	SNP	Silent	7	100028415	T	A	55	59
BRCA	TCGA-A2-A0CQ	KCTD7	SNP	Missense_Mutation	7	66103260	G	T	38	98
BRCA	TCGA-A2-A0CQ	GRHL2	SNP	Missense_Mutation	8	102661656	A	T	11	61
BRCA	TCGA-A2-A0CQ	KCNV1	SNP	Silent	8	110980575	C	T	23	36
BRCA	TCGA-A2-A0CQ	IPPK	SNP	Silent	9	95381788	A	G	11	49
BRCA	TCGA-A2-A0CS	VPS13D	SNP	Missense_Mutation	1	12445347	G	A	34	68
BRCA	TCGA-A2-A0CS	GPA33	SNP	Silent	1	167024281	G	T	46	46
BRCA	TCGA-A2-A0CS	FMO1	SNP	Missense_Mutation	1	171236862	C	A	29	85
BRCA	TCGA-A2-A0CS	PTPN14	SNP	Missense_Mutation	1	214557597	G	A	37	78
BRCA	TCGA-A2-A0CS	LARP4B	SNP	Missense_Mutation	10	871788	C	A	30	71
BRCA	TCGA-A2-A0CS	OR4S2	SNP	Missense_Mutation	11	55419253	G	T	36	56
BRCA	TCGA-A2-A0CS	OR10A2	SNP	Missense_Mutation	11	6891161	G	T	42	73
BRCA	TCGA-A2-A0CS	CDKN1B	INS	Frame_Shift_Ins	12	12871146	-	C	54	52
BRCA	TCGA-A2-A0CS	GLT1D1	SNP	Silent	12	129467539	C	T	19	28
BRCA	TCGA-A2-A0CS	RAPGEF3	SNP	Nonsense_Mutation	12	48141337	G	A	38	59
BRCA	TCGA-A2-A0CS	DLK1	SNP	Silent	14	101200651	C	T	27	51
BRCA	TCGA-A2-A0CS	ATG2B	SNP	Missense_Mutation	14	96797849	T	C	62	80
BRCA	TCGA-A2-A0CS	MAN2C1	SNP	Silent	15	75651980	C	T	23	43
BRCA	TCGA-A2-A0CS	PRSS33	SNP	Missense_Mutation	16	2834663	C	G	24	59
BRCA	TCGA-A2-A0CS	MYH1	SNP	Silent	17	10404694	G	A	39	27
BRCA	TCGA-A2-A0CS	TRIM16L	SNP	Silent	17	18638608	C	T	27	29
BRCA	TCGA-A2-A0CS	KRT35	SNP	Silent	17	39633898	G	T	43	30
BRCA	TCGA-A2-A0CS	LLGL2	DEL	Frame_Shift_Del	17	73564739	GCCGGCA	-	38	86
BRCA	TCGA-A2-A0CS	DSG3	SNP	Missense_Mutation	18	29044224	C	T	23	57
BRCA	TCGA-A2-A0CS	S1PR5	SNP	Missense_Mutation	19	10625096	C	T	19	72
BRCA	TCGA-A2-A0CS	JSRP1	SNP	Splice_Site	19	2254442	A	T	6	65
BRCA	TCGA-A2-A0CS	BMPR2	SNP	Nonsense_Mutation	2	203242213	C	T	25	79
BRCA	TCGA-A2-A0CS	KIF16B	SNP	Missense_Mutation	20	16486798	C	T	20	100
BRCA	TCGA-A2-A0CS	ATP2B3	SNP	Missense_Mutation	23	152807217	G	T	48	62
BRCA	TCGA-A2-A0CS	FAM120C	SNP	Silent	23	54161503	T	A	51	51
BRCA	TCGA-A2-A0CS	TBL1XR1	SNP	Missense_Mutation	3	176752091	T	C	52	55
BRCA	TCGA-A2-A0CS	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A0CS	ADH7	SNP	Missense_Mutation	4	100341731	C	T	19	67
BRCA	TCGA-A2-A0CS	ADAMTS2	SNP	Silent	5	178556987	G	A	40	35
BRCA	TCGA-A2-A0CS	GPR98	SNP	Silent	5	90086905	T	C	55	50
BRCA	TCGA-A2-A0CS	LOC100287918	SNP	Silent	6	127981108	T	C	51	46
BRCA	TCGA-A2-A0CS	VNN1	SNP	Missense_Mutation	6	133015262	T	C	49	85
BRCA	TCGA-A2-A0CS	OR10C1	SNP	Silent	6	29408551	C	T	23	40
BRCA	TCGA-A2-A0CS	MDGA1	DEL	Frame_Shift_Del	6	37612289	TA	-	61	52
BRCA	TCGA-A2-A0CS	PKHD1	SNP	Missense_Mutation	6	51637584	A	T	2	76
BRCA	TCGA-A2-A0CS	ZNF292	SNP	Silent	6	87865327	C	T	23	78
BRCA	TCGA-A2-A0CS	TAS2R16	SNP	Missense_Mutation	7	122635049	G	A	45	53
BRCA	TCGA-A2-A0CS	MLL3	INS	Frame_Shift_Ins	7	151851131	-	A	49	47
BRCA	TCGA-A2-A0CS	EFR3A	DEL	Frame_Shift_Del	8	132998454	G	-	37	93
BRCA	TCGA-A2-A0CS	ST3GAL1	DEL	In_Frame_Del	8	134474151	GAGGAT	-	33	48
BRCA	TCGA-A2-A0CS	SARDH	SNP	Missense_Mutation	9	136599022	C	T	21	57
BRCA	TCGA-A2-A0CS	LINGO2	SNP	Missense_Mutation	9	27949369	G	T	46	100
BRCA	TCGA-A2-A0CS	DIRAS2	SNP	Missense_Mutation	9	93375893	G	A	38	98
BRCA	TCGA-A2-A0CT	TCHH	SNP	Missense_Mutation	1	152085140	C	G	32	51
BRCA	TCGA-A2-A0CT	UBAP2L	SNP	Silent	1	154229568	C	T	30	51
BRCA	TCGA-A2-A0CT	HSPA7	SNP	Missense_Mutation	1	161577161	G	A	34	63
BRCA	TCGA-A2-A0CT	ASPM	SNP	Silent	1	197111819	G	T	45	59
BRCA	TCGA-A2-A0CT	SIPA1L2	SNP	Missense_Mutation	1	232561348	C	T	21	59
BRCA	TCGA-A2-A0CT	LYST	SNP	Missense_Mutation	1	235969153	C	T	32	80
BRCA	TCGA-A2-A0CT	SLC2A1	SNP	Silent	1	43393369	G	A	45	75
BRCA	TCGA-A2-A0CT	LRRIQ3	SNP	Missense_Mutation	1	74507579	C	A	30	60
BRCA	TCGA-A2-A0CT	INPP5F	SNP	Nonsense_Mutation	10	121583335	C	T	29	100
BRCA	TCGA-A2-A0CT	NUDT5	SNP	Missense_Mutation	10	12215795	C	T	29	94
BRCA	TCGA-A2-A0CT	FRMD4A	SNP	Silent	10	13782556	G	A	36	67
BRCA	TCGA-A2-A0CT	KIF11	SNP	Missense_Mutation	10	94393475	G	T	48	53
BRCA	TCGA-A2-A0CT	MUC6	SNP	Missense_Mutation	11	1015932	G	A	37	53
BRCA	TCGA-A2-A0CT	MUC6	SNP	Silent	11	1015973	G	A	45	52
BRCA	TCGA-A2-A0CT	MUC6	SNP	Missense_Mutation	11	1017276	G	C	33	49
BRCA	TCGA-A2-A0CT	NDUFS3	SNP	Silent	11	47603972	C	T	31	54
BRCA	TCGA-A2-A0CT	OR10A6	SNP	Missense_Mutation	11	7949711	G	A	41	51
BRCA	TCGA-A2-A0CT	ALDH1L2	SNP	Silent	12	105456678	G	A	40	54
BRCA	TCGA-A2-A0CT	MLL2	SNP	Missense_Mutation	12	49427728	T	A	54	90
BRCA	TCGA-A2-A0CT	MCRS1	SNP	Missense_Mutation	12	49953743	G	C	38	64
BRCA	TCGA-A2-A0CT	KRT1	SNP	Missense_Mutation	12	53069105	C	T	22	58
BRCA	TCGA-A2-A0CT	VWF	SNP	Silent	12	6122726	G	A	40	43
BRCA	TCGA-A2-A0CT	RCBTB2	SNP	Silent	13	49075943	A	T	7	43
BRCA	TCGA-A2-A0CT	MYH6	SNP	Silent	14	23874854	G	A	40	51
BRCA	TCGA-A2-A0CT	LTBP2	SNP	Missense_Mutation	14	74972768	C	T	27	55
BRCA	TCGA-A2-A0CT	SERPINA10	SNP	Silent	14	94756847	C	T	27	31
BRCA	TCGA-A2-A0CT	HCN4	SNP	Missense_Mutation	15	73621931	G	A	38	68
BRCA	TCGA-A2-A0CT	FBXO22	SNP	Missense_Mutation	15	76196845	T	C	51	73
BRCA	TCGA-A2-A0CT	MYH11	SNP	Missense_Mutation	16	15818522	G	C	33	57
BRCA	TCGA-A2-A0CT	TBL3	SNP	Missense_Mutation	16	2024405	A	G	10	64
BRCA	TCGA-A2-A0CT	ZSCAN10	SNP	Silent	16	3140511	G	A	37	6
BRCA	TCGA-A2-A0CT	ADCY7	SNP	Missense_Mutation	16	50324435	C	G	32	57
BRCA	TCGA-A2-A0CT	GPR97	SNP	Missense_Mutation	16	57714456	C	T	19	68
BRCA	TCGA-A2-A0CT	EFCAB5	SNP	Missense_Mutation	17	28380797	C	T	19	51
BRCA	TCGA-A2-A0CT	NXN	SNP	Silent	17	729229	C	T	26	49
BRCA	TCGA-A2-A0CT	ST6GALNAC1	SNP	Missense_Mutation	17	74623542	C	G	30	76
BRCA	TCGA-A2-A0CT	CCDC40	SNP	Missense_Mutation	17	78055837	C	A	25	75
BRCA	TCGA-A2-A0CT	MYH10	SNP	Missense_Mutation	17	8384646	G	A	33	84
BRCA	TCGA-A2-A0CT	MYH10	SNP	Missense_Mutation	17	8424562	C	T	29	100
BRCA	TCGA-A2-A0CT	CDH2	SNP	Missense_Mutation	18	25565518	C	G	32	65
BRCA	TCGA-A2-A0CT	KIAA1468	SNP	Silent	18	59854856	C	A	31	60
BRCA	TCGA-A2-A0CT	ANKRD12	SNP	Missense_Mutation	18	9195688	C	T	29	94
BRCA	TCGA-A2-A0CT	STX10	SNP	Nonsense_Mutation	19	13260551	C	A	32	78
BRCA	TCGA-A2-A0CT	ZNF486	SNP	Missense_Mutation	19	20308633	C	G	29	78
BRCA	TCGA-A2-A0CT	CYP2S1	SNP	Silent	19	41703775	C	T	27	49
BRCA	TCGA-A2-A0CT	ZNF473	SNP	Missense_Mutation	19	50548923	G	T	40	93
BRCA	TCGA-A2-A0CT	OR2Z1	SNP	Silent	19	8841768	G	T	48	56
BRCA	TCGA-A2-A0CT	CNGA3	SNP	Missense_Mutation	2	99013495	C	T	27	56
BRCA	TCGA-A2-A0CT	TMEM74B	SNP	Silent	20	1161624	G	A	46	63
BRCA	TCGA-A2-A0CT	SYCP2	SNP	Missense_Mutation	20	58467646	G	A	37	54
BRCA	TCGA-A2-A0CT	KCTD17	SNP	Silent	22	37455388	C	T	27	40
BRCA	TCGA-A2-A0CT	ZNF280C	SNP	Missense_Mutation	23	129370542	G	T	44	60
BRCA	TCGA-A2-A0CT	TBL1X	SNP	Missense_Mutation	23	9683009	G	T	41	90
BRCA	TCGA-A2-A0CT	CHRD	SNP	Silent	3	184104513	C	T	19	49
BRCA	TCGA-A2-A0CT	CEP19	SNP	Nonsense_Mutation	3	196434580	C	A	30	70
BRCA	TCGA-A2-A0CT	CLASP2	SNP	Missense_Mutation	3	33644558	C	T	29	96
BRCA	TCGA-A2-A0CT	AMIGO3	SNP	Missense_Mutation	3	49756034	A	G	14	49
BRCA	TCGA-A2-A0CT	FLNB	INS	In_Frame_Ins	3	58135903	-	CGT	22	77
BRCA	TCGA-A2-A0CT	IL17RC	SNP	Silent	3	9974335	C	T	32	52
BRCA	TCGA-A2-A0CT	ZNF518B	SNP	Missense_Mutation	4	10445216	C	T	30	71
BRCA	TCGA-A2-A0CT	ANK2	SNP	Missense_Mutation	4	114238897	C	G	32	77
BRCA	TCGA-A2-A0CT	TKTL2	SNP	Missense_Mutation	4	164393824	A	G	4	73
BRCA	TCGA-A2-A0CT	GRK4	SNP	Missense_Mutation	4	3039136	C	G	31	36
BRCA	TCGA-A2-A0CT	FRYL	SNP	Silent	4	48636482	A	G	16	62
BRCA	TCGA-A2-A0CT	C4orf40	SNP	Missense_Mutation	4	71021774	C	T	19	50
BRCA	TCGA-A2-A0CT	TSLP	SNP	Silent	5	110411667	G	A	33	52
BRCA	TCGA-A2-A0CT	PCDHA4	SNP	Missense_Mutation	5	140188814	G	A	39	64
BRCA	TCGA-A2-A0CT	PCDHGB4	SNP	Silent	5	140768708	C	T	23	36
BRCA	TCGA-A2-A0CT	LARS	SNP	Missense_Mutation	5	145537087	C	T	30	76
BRCA	TCGA-A2-A0CT	ITK	SNP	Missense_Mutation	5	156638350	G	A	39	91
BRCA	TCGA-A2-A0CT	BTNL3	SNP	Missense_Mutation	5	180420100	G	A	47	49
BRCA	TCGA-A2-A0CT	RASA1	SNP	Missense_Mutation	5	86564633	C	T	31	65
BRCA	TCGA-A2-A0CT	AKAP12	SNP	Missense_Mutation	6	151671669	G	A	45	100
BRCA	TCGA-A2-A0CT	HIST1H2AK	SNP	Missense_Mutation	6	27806113	G	A	37	73
BRCA	TCGA-A2-A0CT	ABCF1	SNP	Missense_Mutation	6	30558385	G	C	33	59
BRCA	TCGA-A2-A0CT	TAP1	SNP	Silent	6	32813449	G	A	38	50
BRCA	TCGA-A2-A0CT	TBCC	SNP	Missense_Mutation	6	42713573	G	A	37	77
BRCA	TCGA-A2-A0CT	TTBK1	SNP	Missense_Mutation	6	43251629	C	T	31	69
BRCA	TCGA-A2-A0CT	CDYL	SNP	Missense_Mutation	6	4943943	G	A	33	99
BRCA	TCGA-A2-A0CT	RREB1	SNP	Missense_Mutation	6	7247355	G	A	40	48
BRCA	TCGA-A2-A0CT	TBX18	SNP	Missense_Mutation	6	85448266	G	T	44	98
BRCA	TCGA-A2-A0CT	ABCB1	SNP	Silent	7	87135240	C	T	19	45
BRCA	TCGA-A2-A0CT	SLC25A13	SNP	Missense_Mutation	7	95822392	C	T	27	100
BRCA	TCGA-A2-A0CT	RP1L1	SNP	Missense_Mutation	8	10469311	G	A	38	56
BRCA	TCGA-A2-A0CT	PKHD1L1	SNP	Missense_Mutation	8	110499005	C	T	19	75
BRCA	TCGA-A2-A0CT	EXT1	SNP	Missense_Mutation	8	119122505	T	C	62	92
BRCA	TCGA-A2-A0CT	ATAD2	SNP	Silent	8	124340530	C	T	30	52
BRCA	TCGA-A2-A0CT	LYN	SNP	Missense_Mutation	8	56864664	A	T	2	49
BRCA	TCGA-A2-A0CT	SETX	DEL	In_Frame_Del	9	135140193	ACC	-	2	53
BRCA	TCGA-A2-A0CT	ZNF658	SNP	Missense_Mutation	9	40772564	C	T	27	59
BRCA	TCGA-A2-A0CT	PRUNE2	SNP	Missense_Mutation	9	79325463	C	T	20	70
BRCA	TCGA-A2-A0CU	IRF2BP2	INS	Frame_Shift_Ins	1	234743301	-	A	41	100
BRCA	TCGA-A2-A0CU	LOC729020	SNP	Missense_Mutation	10	105006118	G	T	41	53
BRCA	TCGA-A2-A0CU	GLB1L3	SNP	Missense_Mutation	11	134179562	C	T	30	79
BRCA	TCGA-A2-A0CU	ABCC8	SNP	Missense_Mutation	11	17428939	G	A	37	92
BRCA	TCGA-A2-A0CU	LOC645490	SNP	Missense_Mutation	11	20596552	T	A	51	55
BRCA	TCGA-A2-A0CU	EHF	SNP	Missense_Mutation	11	34664214	C	G	22	61
BRCA	TCGA-A2-A0CU	OR56A1	SNP	Missense_Mutation	11	6048841	G	A	46	61
BRCA	TCGA-A2-A0CU	PGA5	SNP	Missense_Mutation	11	61017206	C	G	18	81
BRCA	TCGA-A2-A0CU	PPP1R32	SNP	Missense_Mutation	11	61258004	A	C	9	49
BRCA	TCGA-A2-A0CU	TMEM233	SNP	Splice_Site	12	120031840	G	A	44	87
BRCA	TCGA-A2-A0CU	WIF1	SNP	Missense_Mutation	12	65460458	G	C	33	63
BRCA	TCGA-A2-A0CU	GNB3	SNP	Nonsense_Mutation	12	6952161	C	T	19	77
BRCA	TCGA-A2-A0CU	CILP	SNP	Missense_Mutation	15	65491181	G	T	34	66
BRCA	TCGA-A2-A0CU	SPNS1	SNP	Missense_Mutation	16	28986519	C	G	23	65
BRCA	TCGA-A2-A0CU	SRCAP	SNP	Missense_Mutation	16	30722123	C	T	25	68
BRCA	TCGA-A2-A0CU	SOCS7	SNP	Silent	17	36522192	C	T	21	55
BRCA	TCGA-A2-A0CU	ZNF486	SNP	Silent	19	20307906	G	T	47	72
BRCA	TCGA-A2-A0CU	REV1	SNP	Silent	2	100019354	G	A	35	70
BRCA	TCGA-A2-A0CU	NYAP2	SNP	Missense_Mutation	2	226273793	G	A	37	94
BRCA	TCGA-A2-A0CU	NRBP1	DEL	Frame_Shift_Del	2	27656951	G	-	35	53
BRCA	TCGA-A2-A0CU	SPANXC	SNP	Missense_Mutation	23	140335783	C	T	27	44
BRCA	TCGA-A2-A0CU	FMR1NB	SNP	Splice_site	23	147106385	C	T	27	50
BRCA	TCGA-A2-A0CU	LOC100288788	SNP	Silent	23	65176943	T	C	58	47
BRCA	TCGA-A2-A0CU	KIAA2022	DEL	Frame_Shift_Del	23	73963301	A	-	9	69
BRCA	TCGA-A2-A0CU	DGKG	SNP	Splice_site	3	185986591	G	A	40	98
BRCA	TCGA-A2-A0CU	LDB2	SNP	Missense_Mutation	4	16504298	A	T	12	63
BRCA	TCGA-A2-A0CU	SNX25	SNP	Splice_Site	4	186274637	A	T	7	90
BRCA	TCGA-A2-A0CU	DCAF4L1	SNP	Missense_Mutation	4	41984183	G	A	39	71
BRCA	TCGA-A2-A0CU	YIPF7	SNP	Missense_Mutation	4	44626756	A	T	4	68
BRCA	TCGA-A2-A0CU	TMPRSS11B	SNP	Silent	4	69094493	A	T	7	52
BRCA	TCGA-A2-A0CU	UPLP	SNP	Missense_Mutation	7	102279621	C	T	31	50
BRCA	TCGA-A2-A0CU	PARP12	SNP	Missense_Mutation	7	139726015	C	G	21	85
BRCA	TCGA-A2-A0CU	CYP7B1	SNP	Silent	8	65527680	G	A	40	55
BRCA	TCGA-A2-A0CU	FREM1	SNP	Missense_Mutation	9	14851595	G	A	38	54
BRCA	TCGA-A2-A0CU	KDM4C	SNP	Silent	9	6793072	G	A	36	41
BRCA	TCGA-A2-A0CV	ABCB10	SNP	Missense_Mutation	1	229683401	G	C	33	60
BRCA	TCGA-A2-A0CV	HS2ST1	SNP	Missense_Mutation	1	87549897	A	G	13	53
BRCA	TCGA-A2-A0CV	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-A2-A0CV	AHNAK	SNP	Missense_Mutation	11	62295540	T	C	50	58
BRCA	TCGA-A2-A0CV	TMEM132D	SNP	Silent	12	129569107	G	A	37	25
BRCA	TCGA-A2-A0CV	TUBA1C	SNP	Missense_Mutation	12	49666122	G	T	47	97
BRCA	TCGA-A2-A0CV	FAM179B	SNP	Nonsense_Mutation	14	45431733	C	T	31	57
BRCA	TCGA-A2-A0CV	SYT16	SNP	Missense_Mutation	14	62536500	G	A	39	50
BRCA	TCGA-A2-A0CV	ANPEP	SNP	Missense_Mutation	15	90347575	C	T	23	93
BRCA	TCGA-A2-A0CV	VWA3A	SNP	Silent	16	22143005	G	A	38	26
BRCA	TCGA-A2-A0CV	GLTSCR2	SNP	Missense_Mutation	19	48258141	A	G	6	55
BRCA	TCGA-A2-A0CV	SYT5	SNP	Missense_Mutation	19	55690340	G	A	47	69
BRCA	TCGA-A2-A0CV	HECW2	SNP	Silent	2	197183859	G	A	39	18
BRCA	TCGA-A2-A0CV	SNTA1	SNP	Missense_Mutation	20	31996318	C	A	26	65
BRCA	TCGA-A2-A0CV	CPT1B	SNP	Missense_Mutation	22	51008742	C	T	27	62
BRCA	TCGA-A2-A0CV	GOLGB1	SNP	Missense_Mutation	3	121415242	C	A	28	57
BRCA	TCGA-A2-A0CV	ROBO1	SNP	Missense_Mutation	3	78719385	C	G	26	99
BRCA	TCGA-A2-A0CV	LRBA	SNP	Missense_Mutation	4	151223818	T	C	49	90
BRCA	TCGA-A2-A0CV	PCDHA12	SNP	Silent	5	140256806	G	A	44	44
BRCA	TCGA-A2-A0CV	CMYA5	SNP	Missense_Mutation	5	79032395	G	A	38	52
BRCA	TCGA-A2-A0CV	TTK	SNP	Missense_Mutation	6	80746264	G	A	43	98
BRCA	TCGA-A2-A0CV	FAM20C	SNP	Missense_Mutation	7	299785	G	C	41	100
BRCA	TCGA-A2-A0CV	EIF2C2	SNP	Missense_Mutation	8	141561427	G	A	38	60
BRCA	TCGA-A2-A0CV	CARD9	SNP	Missense_Mutation	9	139266359	T	C	63	70
BRCA	TCGA-A2-A0CV	GNE	SNP	Missense_Mutation	9	36217480	C	T	27	64
BRCA	TCGA-A2-A0CW	GNAT2	DEL	Splice_Site	1	110148929	C	-	18	99
BRCA	TCGA-A2-A0CW	SF3B4	SNP	Missense_Mutation	1	149895759	C	A	31	76
BRCA	TCGA-A2-A0CW	TSTD1	SNP	Silent	1	161008416	G	T	40	50
BRCA	TCGA-A2-A0CW	USH2A	SNP	Missense_Mutation	1	216348792	C	T	24	69
BRCA	TCGA-A2-A0CW	HSPG2	SNP	Missense_Mutation	1	22211365	C	T	29	92
BRCA	TCGA-A2-A0CW	RYR2	SNP	Missense_Mutation	1	237711763	C	A	24	100
BRCA	TCGA-A2-A0CW	AKT3	SNP	Splice_site	1	243727150	A	G	2	61
BRCA	TCGA-A2-A0CW	ZNF642	SNP	Missense_Mutation	1	40961283	C	T	32	95
BRCA	TCGA-A2-A0CW	AGAP7	SNP	Missense_Mutation	10	51465579	A	G	13	58
BRCA	TCGA-A2-A0CW	ATHL1	SNP	Missense_Mutation	11	289917	G	A	37	67
BRCA	TCGA-A2-A0CW	DRD4	SNP	Missense_Mutation	11	640571	G	A	40	58
BRCA	TCGA-A2-A0CW	OR2D2	SNP	Silent	11	6913663	G	A	39	47
BRCA	TCGA-A2-A0CW	SLC6A13	SNP	Missense_Mutation	12	352926	A	T	3	94
BRCA	TCGA-A2-A0CW	PDZRN4	SNP	Missense_Mutation	12	41946516	G	A	37	100
BRCA	TCGA-A2-A0CW	CSRNP2	SNP	Missense_Mutation	12	51457800	A	G	11	72
BRCA	TCGA-A2-A0CW	C12orf57	SNP	Missense_Mutation	12	7053746	G	A	40	68
BRCA	TCGA-A2-A0CW	KIAA1199	SNP	Missense_Mutation	15	81229087	C	G	32	67
BRCA	TCGA-A2-A0CW	UNC45A	SNP	Missense_Mutation	15	91485969	T	G	64	50
BRCA	TCGA-A2-A0CW	CNOT1	SNP	Nonsense_Mutation	16	58589801	G	A	45	100
BRCA	TCGA-A2-A0CW	CCDC79	SNP	Missense_Mutation	16	66803899	G	T	36	50
BRCA	TCGA-A2-A0CW	WWP2	SNP	Missense_Mutation	16	69971470	A	T	7	92
BRCA	TCGA-A2-A0CW	ZNF821	SNP	Missense_Mutation	16	71893986	C	G	30	76
BRCA	TCGA-A2-A0CW	MYO1D	SNP	Missense_Mutation	17	31087405	A	T	12	89
BRCA	TCGA-A2-A0CW	CDK12	SNP	Missense_Mutation	17	37681111	G	T	44	66
BRCA	TCGA-A2-A0CW	EZH1	SNP	Missense_Mutation	17	40856673	C	G	27	100
BRCA	TCGA-A2-A0CW	TP53	SNP	Nonsense_Mutation	17	7578263	G	A	39	67
BRCA	TCGA-A2-A0CW	RNF213	SNP	Missense_Mutation	17	78360175	C	T	31	50
BRCA	TCGA-A2-A0CW	MAFG	SNP	Silent	17	79880760	C	T	29	52
BRCA	TCGA-A2-A0CW	MFSD6L	SNP	Missense_Mutation	17	8702017	G	C	47	52
BRCA	TCGA-A2-A0CW	BCAT2	SNP	Missense_Mutation	19	49303011	C	T	19	43
BRCA	TCGA-A2-A0CW	VRK3	SNP	Missense_Mutation	19	50482398	G	T	33	53
BRCA	TCGA-A2-A0CW	ZNF480	SNP	Missense_Mutation	19	52824933	G	C	33	49
BRCA	TCGA-A2-A0CW	ZNF160	SNP	Missense_Mutation	19	53571578	C	T	29	49
BRCA	TCGA-A2-A0CW	ZNF160	SNP	Missense_Mutation	19	53573463	A	C	14	55
BRCA	TCGA-A2-A0CW	PPP6R1	SNP	Missense_Mutation	19	55753591	G	T	33	84
BRCA	TCGA-A2-A0CW	LRP2	SNP	Missense_Mutation	2	170042184	C	T	30	89
BRCA	TCGA-A2-A0CW	JPH2	SNP	Missense_Mutation	20	42788508	C	T	31	77
BRCA	TCGA-A2-A0CW	ZNF335	SNP	Silent	20	44596988	C	T	29	60
BRCA	TCGA-A2-A0CW	BRWD1	SNP	Missense_Mutation	21	40570751	C	T	30	50
BRCA	TCGA-A2-A0CW	BRWD1	SNP	Missense_Mutation	21	40570851	C	G	32	58
BRCA	TCGA-A2-A0CW	BRWD1	SNP	Missense_Mutation	21	40571558	C	G	32	65
BRCA	TCGA-A2-A0CW	TCEAL2	SNP	Missense_Mutation	23	101382274	C	A	17	65
BRCA	TCGA-A2-A0CW	IRS4	SNP	Silent	23	107979179	G	A	39	52
BRCA	TCGA-A2-A0CW	ITIH6	DEL	Frame_Shift_Del	23	54784623	AGCAG	-	7	44
BRCA	TCGA-A2-A0CW	RPS6KA6	SNP	Missense_Mutation	23	83411145	C	T	29	98
BRCA	TCGA-A2-A0CW	ARHGAP31	SNP	Missense_Mutation	3	119133553	C	T	27	61
BRCA	TCGA-A2-A0CW	PIK3CA	SNP	Missense_Mutation	3	178952090	G	C	47	100
BRCA	TCGA-A2-A0CW	PRRT3	SNP	Missense_Mutation	3	9990556	G	A	38	64
BRCA	TCGA-A2-A0CW	SCFD2	SNP	Missense_Mutation	4	54231342	G	C	46	81
BRCA	TCGA-A2-A0CW	GRID2	SNP	Missense_Mutation	4	94377069	C	T	19	90
BRCA	TCGA-A2-A0CW	TCF7	SNP	Missense_Mutation	5	133481516	T	A	55	57
BRCA	TCGA-A2-A0CW	RTN4IP1	DEL	Frame_Shift_Del	6	107076797	TAATCCTTCT	-	53	71
BRCA	TCGA-A2-A0CW	DOPEY1	SNP	Silent	6	83877655	C	G	23	49
BRCA	TCGA-A2-A0CW	MUC12	SNP	Missense_Mutation	7	100639291	C	T	32	56
BRCA	TCGA-A2-A0CW	MUC12	SNP	Missense_Mutation	7	100647790	C	T	32	53
BRCA	TCGA-A2-A0CW	ZNF705D	SNP	Missense_Mutation	8	11970495	G	A	37	49
BRCA	TCGA-A2-A0CW	EIF2C2	SNP	Missense_Mutation	8	141566309	G	C	36	100
BRCA	TCGA-A2-A0CW	RP1	SNP	Missense_Mutation	8	55540804	C	A	25	52
BRCA	TCGA-A2-A0CW	SVEP1	SNP	Silent	9	113192280	A	C	1	57
BRCA	TCGA-A2-A0CW	CCDC171	DEL	Frame_Shift_Del	9	15778997	TT	-	56	52
BRCA	TCGA-A2-A0CX	CSF1	SNP	Missense_Mutation	1	110466073	C	T	29	71
BRCA	TCGA-A2-A0CX	LYSMD1	SNP	Missense_Mutation	1	151137724	G	A	39	68
BRCA	TCGA-A2-A0CX	INSRR	SNP	Missense_Mutation	1	156819062	G	A	39	69
BRCA	TCGA-A2-A0CX	IFI16	SNP	Missense_Mutation	1	158988118	G	A	45	64
BRCA	TCGA-A2-A0CX	DEGS1	SNP	Missense_Mutation	1	224377343	G	A	45	62
BRCA	TCGA-A2-A0CX	NVL	SNP	Missense_Mutation	1	224477395	C	T	28	51
BRCA	TCGA-A2-A0CX	KIAA1383	SNP	Missense_Mutation	1	232942483	G	A	45	59
BRCA	TCGA-A2-A0CX	SCMH1	SNP	Silent	1	41617301	G	A	41	58
BRCA	TCGA-A2-A0CX	EFCAB7	SNP	Missense_Mutation	1	64027432	G	C	45	53
BRCA	TCGA-A2-A0CX	ZZZ3	SNP	Missense_Mutation	1	78034122	C	G	30	51
BRCA	TCGA-A2-A0CX	USP33	SNP	Silent	1	78191440	G	C	45	55
BRCA	TCGA-A2-A0CX	BLOC1S2	SNP	Missense_Mutation	10	102046374	C	T	29	73
BRCA	TCGA-A2-A0CX	FAM178A	SNP	Silent	10	102705188	G	T	45	66
BRCA	TCGA-A2-A0CX	C10orf2	SNP	Silent	10	102748459	C	T	32	50
BRCA	TCGA-A2-A0CX	PNLIPRP3	SNP	Missense_Mutation	10	118196289	C	T	29	47
BRCA	TCGA-A2-A0CX	DHTKD1	SNP	Missense_Mutation	10	12123578	G	A	45	95
BRCA	TCGA-A2-A0CX	FAM196A	SNP	Nonsense_Mutation	10	128974473	G	A	48	85
BRCA	TCGA-A2-A0CX	STAM	SNP	Splice_Site	10	17702462	G	C	33	95
BRCA	TCGA-A2-A0CX	PARD3	SNP	Silent	10	34400415	C	T	32	86
BRCA	TCGA-A2-A0CX	NET1	SNP	Missense_Mutation	10	5495482	G	A	45	69
BRCA	TCGA-A2-A0CX	C10orf107	SNP	Missense_Mutation	10	63519907	G	C	33	58
BRCA	TCGA-A2-A0CX	TCTN3	SNP	Silent	10	97442429	G	A	45	66
BRCA	TCGA-A2-A0CX	C11orf87	SNP	Missense_Mutation	11	109294466	G	A	38	82
BRCA	TCGA-A2-A0CX	HEPACAM	SNP	Missense_Mutation	11	124793676	C	G	30	78
BRCA	TCGA-A2-A0CX	PSMA1	SNP	Missense_Mutation	11	14539262	C	A	32	82
BRCA	TCGA-A2-A0CX	PRR5L	SNP	Missense_Mutation	11	36472825	G	A	44	71
BRCA	TCGA-A2-A0CX	RRM1	SNP	Missense_Mutation	11	4133255	C	T	32	100
BRCA	TCGA-A2-A0CX	FNBP4	SNP	Missense_Mutation	11	47765568	G	C	41	100
BRCA	TCGA-A2-A0CX	CDHR5	SNP	Missense_Mutation	11	618843	C	G	32	49
BRCA	TCGA-A2-A0CX	CDHR5	SNP	Missense_Mutation	11	621446	C	T	29	48
BRCA	TCGA-A2-A0CX	CDHR5	SNP	Missense_Mutation	11	621862	C	G	29	68
BRCA	TCGA-A2-A0CX	CDHR5	SNP	Missense_Mutation	11	621871	C	T	30	60
BRCA	TCGA-A2-A0CX	B3GNT1	SNP	Silent	11	66114072	G	A	39	50
BRCA	TCGA-A2-A0CX	C2CD3	SNP	Silent	11	73789584	C	T	29	50
BRCA	TCGA-A2-A0CX	PAK1	SNP	Missense_Mutation	11	77103382	C	T	32	100
BRCA	TCGA-A2-A0CX	RPL27A	SNP	Translation_Start_Site	11	8704303	G	A	40	52
BRCA	TCGA-A2-A0CX	DEPDC4	SNP	Missense_Mutation	12	100657398	T	G	64	51
BRCA	TCGA-A2-A0CX	ALDH1L2	SNP	Missense_Mutation	12	105425679	G	A	41	100
BRCA	TCGA-A2-A0CX	SART3	SNP	Missense_Mutation	12	108920032	G	C	33	50
BRCA	TCGA-A2-A0CX	ETV6	SNP	Missense_Mutation	12	11905408	C	T	30	86
BRCA	TCGA-A2-A0CX	BICD1	SNP	Missense_Mutation	12	32369283	C	G	32	73
BRCA	TCGA-A2-A0CX	FGD4	SNP	Missense_Mutation	12	32751440	G	A	45	76
BRCA	TCGA-A2-A0CX	PKP2	SNP	Missense_Mutation	12	32955343	C	G	29	83
BRCA	TCGA-A2-A0CX	C12orf40	SNP	Silent	12	40034769	G	C	45	53
BRCA	TCGA-A2-A0CX	PPHLN1	DEL	Frame_Shift_Del	12	42835152	G	-	47	53
BRCA	TCGA-A2-A0CX	TUBA1B	SNP	Missense_Mutation	12	49521752	C	G	32	98
BRCA	TCGA-A2-A0CX	CALCOCO1	SNP	Nonsense_Mutation	12	54109013	C	A	29	66
BRCA	TCGA-A2-A0CX	CS	SNP	Missense_Mutation	12	56668617	C	G	32	99
BRCA	TCGA-A2-A0CX	R3HDM2	SNP	Missense_Mutation	12	57648837	C	T	30	95
BRCA	TCGA-A2-A0CX	ATP2B1	SNP	Missense_Mutation	12	90015427	G	T	48	98
BRCA	TCGA-A2-A0CX	SLC10A2	SNP	Silent	13	103701763	C	T	32	79
BRCA	TCGA-A2-A0CX	KL	SNP	Missense_Mutation	13	33638166	G	C	33	48
BRCA	TCGA-A2-A0CX	ATP7B	SNP	Silent	13	52544779	C	T	30	49
BRCA	TCGA-A2-A0CX	CDC42BPB	SNP	Missense_Mutation	14	103434954	C	G	32	83
BRCA	TCGA-A2-A0CX	ADAM6	SNP	Splice_Site	14	106800056	C	T	24	48
BRCA	TCGA-A2-A0CX	EDDM3A	SNP	Silent	14	21216105	C	T	17	48
BRCA	TCGA-A2-A0CX	ARHGAP5	SNP	Nonsense_Mutation	14	32623834	C	T	29	99
BRCA	TCGA-A2-A0CX	CCDC88C	SNP	Silent	14	91779976	C	T	22	52
BRCA	TCGA-A2-A0CX	SYNE3	SNP	Missense_Mutation	14	95921936	C	T	29	66
BRCA	TCGA-A2-A0CX	DENND4A	SNP	Missense_Mutation	15	65962379	C	G	32	100
BRCA	TCGA-A2-A0CX	SCAPER	SNP	Missense_Mutation	15	77087744	G	C	41	67
BRCA	TCGA-A2-A0CX	TEKT5	SNP	Silent	16	10721461	C	T	27	35
BRCA	TCGA-A2-A0CX	ZC3H7A	SNP	Missense_Mutation	16	11868331	G	A	44	62
BRCA	TCGA-A2-A0CX	MKL2	SNP	Missense_Mutation	16	14340567	G	C	33	67
BRCA	TCGA-A2-A0CX	NOMO1	SNP	Missense_Mutation	16	14978247	G	A	37	73
BRCA	TCGA-A2-A0CX	ABCC1	SNP	Silent	16	16200631	C	T	29	37
BRCA	TCGA-A2-A0CX	SETD1A	SNP	Silent	16	30970121	C	T	31	51
BRCA	TCGA-A2-A0CX	ZNF597	SNP	Missense_Mutation	16	3487521	C	G	29	75
BRCA	TCGA-A2-A0CX	ABCC12	SNP	Silent	16	48139206	G	A	37	13
BRCA	TCGA-A2-A0CX	NOB1	SNP	Silent	16	69788555	G	C	37	55
BRCA	TCGA-A2-A0CX	PDXDC2	SNP	Missense_Mutation	16	70020388	G	A	37	44
BRCA	TCGA-A2-A0CX	HYDIN	SNP	Missense_Mutation	16	70889175	C	T	32	66
BRCA	TCGA-A2-A0CX	ZNF23	SNP	Silent	16	71482893	G	A	45	67
BRCA	TCGA-A2-A0CX	ZFHX3	SNP	Nonsense_Mutation	16	72830478	G	A	47	77
BRCA	TCGA-A2-A0CX	RAB11FIP4	SNP	Missense_Mutation	17	29850591	G	A	41	94
BRCA	TCGA-A2-A0CX	RAB11FIP4	SNP	Missense_Mutation	17	29850600	G	C	45	94
BRCA	TCGA-A2-A0CX	RAB11FIP4	SNP	Silent	17	29850958	G	A	45	75
BRCA	TCGA-A2-A0CX	RAB11FIP4	SNP	Silent	17	29851006	G	A	47	48
BRCA	TCGA-A2-A0CX	TOP2A	SNP	Missense_Mutation	17	38569453	G	C	45	62
BRCA	TCGA-A2-A0CX	CAMTA2	SNP	Missense_Mutation	17	4876514	C	G	30	94
BRCA	TCGA-A2-A0CX	MBTD1	SNP	Missense_Mutation	17	49280258	C	G	29	98
BRCA	TCGA-A2-A0CX	RABEP1	SNP	Nonsense_Mutation	17	5235303	C	T	31	68
BRCA	TCGA-A2-A0CX	MKS1	SNP	Missense_Mutation	17	56288047	G	T	47	81
BRCA	TCGA-A2-A0CX	SMG8	SNP	Missense_Mutation	17	57292214	G	A	33	96
BRCA	TCGA-A2-A0CX	BRIP1	SNP	Missense_Mutation	17	59876540	C	G	29	96
BRCA	TCGA-A2-A0CX	TLK2	SNP	Missense_Mutation	17	60654101	G	C	33	100
BRCA	TCGA-A2-A0CX	DDX5	SNP	Silent	17	62499308	T	G	56	62
BRCA	TCGA-A2-A0CX	TP53	SNP	Missense_Mutation	17	7577121	G	A	38	65
BRCA	TCGA-A2-A0CX	PER1	SNP	Missense_Mutation	17	8053552	G	A	41	94
BRCA	TCGA-A2-A0CX	ZNF750	SNP	Missense_Mutation	17	80789153	C	T	32	55
BRCA	TCGA-A2-A0CX	ANKRD30B	SNP	Splice_Site	18	14763684	G	A	33	53
BRCA	TCGA-A2-A0CX	CABYR	SNP	Nonsense_Mutation	18	21736510	G	T	33	35
BRCA	TCGA-A2-A0CX	CCDC102B	SNP	Missense_Mutation	18	66504023	G	A	37	51
BRCA	TCGA-A2-A0CX	DNM2	SNP	Missense_Mutation	19	10935742	G	A	37	97
BRCA	TCGA-A2-A0CX	RGL3	SNP	Nonsense_Mutation	19	11526649	G	A	38	50
BRCA	TCGA-A2-A0CX	CNN1	SNP	Missense_Mutation	19	11657670	C	G	29	70
BRCA	TCGA-A2-A0CX	IL27RA	SNP	Silent	19	14150608	C	T	23	32
BRCA	TCGA-A2-A0CX	MED26	SNP	Silent	19	16687332	G	A	33	57
BRCA	TCGA-A2-A0CX	PDE4C	SNP	Missense_Mutation	19	18328995	G	T	47	93
BRCA	TCGA-A2-A0CX	ZNF208	SNP	Missense_Mutation	19	22154006	C	G	30	65
BRCA	TCGA-A2-A0CX		SNP	Silent	19	34583760	G	A	45	51
BRCA	TCGA-A2-A0CX	MAP3K10	SNP	Missense_Mutation	19	40704438	T	A	62	87
BRCA	TCGA-A2-A0CX	CIC	SNP	Nonsense_Mutation	19	42791325	G	T	41	63
BRCA	TCGA-A2-A0CX	LIPE	SNP	Splice_site	19	42910313	C	T	21	92
BRCA	TCGA-A2-A0CX	CD3EAP	SNP	Missense_Mutation	19	45912334	G	A	33	49
BRCA	TCGA-A2-A0CX	ERCC1	SNP	Missense_Mutation	19	45920148	G	C	43	90
BRCA	TCGA-A2-A0CX	KPTN	SNP	Missense_Mutation	19	47986455	C	T	30	94
BRCA	TCGA-A2-A0CX	CACNG6	SNP	Missense_Mutation	19	54502978	G	A	44	70
BRCA	TCGA-A2-A0CX	VSTM1	SNP	Missense_Mutation	19	54545444	G	A	45	67
BRCA	TCGA-A2-A0CX	NLRP11	SNP	Missense_Mutation	19	56321506	G	C	33	47
BRCA	TCGA-A2-A0CX	NLRP4	SNP	Silent	19	56363563	C	G	29	52
BRCA	TCGA-A2-A0CX	NLRP4	SNP	Missense_Mutation	19	56363675	C	G	29	53
BRCA	TCGA-A2-A0CX	NLRP8	SNP	Missense_Mutation	19	56459312	C	T	29	61
BRCA	TCGA-A2-A0CX	ZRANB3	SNP	Missense_Mutation	2	136103162	C	T	32	83
BRCA	TCGA-A2-A0CX	SCN7A	SNP	Missense_Mutation	2	167330770	T	C	49	47
BRCA	TCGA-A2-A0CX	PPIG	SNP	Missense_Mutation	2	170488421	G	C	33	95
BRCA	TCGA-A2-A0CX	METTL5	SNP	Missense_Mutation	2	170672003	C	G	32	58
BRCA	TCGA-A2-A0CX	AGPS	SNP	Missense_Mutation	2	178301510	G	A	45	93
BRCA	TCGA-A2-A0CX	SSFA2	SNP	Missense_Mutation	2	182787116	G	A	45	75
BRCA	TCGA-A2-A0CX	FAM171B	SNP	Missense_Mutation	2	187627333	C	G	24	99
BRCA	TCGA-A2-A0CX	BMPR2	SNP	Silent	2	203383637	G	A	33	53
BRCA	TCGA-A2-A0CX	UGT1A4	SNP	Missense_Mutation	2	234627740	G	A	40	4
BRCA	TCGA-A2-A0CX	GCKR	SNP	Missense_Mutation	2	27746251	C	T	21	52
BRCA	TCGA-A2-A0CX	WDR43	SNP	Missense_Mutation	2	29152515	C	T	19	67
BRCA	TCGA-A2-A0CX	CDKL4	SNP	Missense_Mutation	2	39453083	G	C	33	98
BRCA	TCGA-A2-A0CX	TTC7A	SNP	Silent	2	47249093	C	T	29	56
BRCA	TCGA-A2-A0CX	MSH6	SNP	Missense_Mutation	2	48028268	C	T	32	86
BRCA	TCGA-A2-A0CX	KIAA1841	SNP	Missense_Mutation	2	61297579	C	G	29	76
BRCA	TCGA-A2-A0CX	MEIS1	SNP	Missense_Mutation	2	66739364	C	T	27	72
BRCA	TCGA-A2-A0CX	CBFA2T2	SNP	Missense_Mutation	20	32199100	G	A	45	100
BRCA	TCGA-A2-A0CX	NCOA6	SNP	Missense_Mutation	20	33329945	C	G	32	81
BRCA	TCGA-A2-A0CX	MYH7B	SNP	Silent	20	33575681	C	T	31	43
BRCA	TCGA-A2-A0CX	CEP250	SNP	Missense_Mutation	20	34086459	C	A	26	48
BRCA	TCGA-A2-A0CX	PANK2	SNP	Missense_Mutation	20	3888593	G	C	41	95
BRCA	TCGA-A2-A0CX	RBPJL	SNP	Missense_Mutation	20	43943089	G	C	45	94
BRCA	TCGA-A2-A0CX	SLC13A3	SNP	Missense_Mutation	20	45212300	G	T	33	98
BRCA	TCGA-A2-A0CX	HAO1	SNP	Missense_Mutation	20	7915161	G	A	45	95
BRCA	TCGA-A2-A0CX	BID	SNP	Missense_Mutation	22	18220787	C	T	32	61
BRCA	TCGA-A2-A0CX	UFD1L	SNP	Missense_Mutation	22	19462608	G	A	37	95
BRCA	TCGA-A2-A0CX	GGTLC2	SNP	Silent	22	22989670	C	T	31	51
BRCA	TCGA-A2-A0CX	EWSR1	SNP	Nonsense_Mutation	22	29693828	C	T	29	81
BRCA	TCGA-A2-A0CX	ACO2	SNP	Missense_Mutation	22	41865178	C	G	31	95
BRCA	TCGA-A2-A0CX	SBF1	SNP	Silent	22	50893515	G	A	37	50
BRCA	TCGA-A2-A0CX	BTK	SNP	Missense_Mutation	23	100615648	C	G	29	83
BRCA	TCGA-A2-A0CX	TCEAL2	SNP	Missense_Mutation	23	101381908	C	G	32	47
BRCA	TCGA-A2-A0CX	GPR112	SNP	Silent	23	135487956	G	T	45	50
BRCA	TCGA-A2-A0CX	GPR112	SNP	Missense_Mutation	23	135487998	G	T	45	50
BRCA	TCGA-A2-A0CX	MCF2	SNP	Silent	23	138727745	G	A	33	41
BRCA	TCGA-A2-A0CX	GEMIN8	SNP	Missense_Mutation	23	14038218	C	T	31	89
BRCA	TCGA-A2-A0CX	MAGEC3	SNP	Silent	23	140953373	C	T	32	37
BRCA	TCGA-A2-A0CX	TAZ	SNP	Silent	23	153641864	C	T	22	48
BRCA	TCGA-A2-A0CX	GAB3	SNP	Missense_Mutation	23	153940741	C	T	30	60
BRCA	TCGA-A2-A0CX	EFHC2	SNP	Missense_Mutation	23	44120503	C	T	29	48
BRCA	TCGA-A2-A0CX	CXorf67	SNP	Missense_Mutation	23	51150764	C	G	32	54
BRCA	TCGA-A2-A0CX	KDM5C	SNP	Missense_Mutation	23	53225908	C	T	29	78
BRCA	TCGA-A2-A0CX	MAGED2	SNP	Silent	23	54841887	C	T	30	72
BRCA	TCGA-A2-A0CX	ZXDB	SNP	Missense_Mutation	23	57620855	G	C	33	72
BRCA	TCGA-A2-A0CX	MED12	SNP	Silent	23	70340837	C	T	29	69
BRCA	TCGA-A2-A0CX	ZCCHC5	SNP	Silent	23	77913174	G	T	43	50
BRCA	TCGA-A2-A0CX	IMPG2	SNP	Missense_Mutation	3	100962906	C	T	29	58
BRCA	TCGA-A2-A0CX	NFKBIZ	SNP	Missense_Mutation	3	101572097	G	C	40	60
BRCA	TCGA-A2-A0CX	WDR52	SNP	Missense_Mutation	3	113098205	G	T	33	68
BRCA	TCGA-A2-A0CX	STXBP5L	SNP	Missense_Mutation	3	120973931	G	A	34	97
BRCA	TCGA-A2-A0CX	MYLK	SNP	Silent	3	123419231	G	A	40	39
BRCA	TCGA-A2-A0CX	HEG1	SNP	Missense_Mutation	3	124738384	G	A	33	61
BRCA	TCGA-A2-A0CX	ACAD11	SNP	Missense_Mutation	3	132297703	G	A	33	72
BRCA	TCGA-A2-A0CX	BTD	SNP	Missense_Mutation	3	15677106	C	G	32	49
BRCA	TCGA-A2-A0CX	GALNTL2	SNP	Silent	3	16216721	G	A	45	52
BRCA	TCGA-A2-A0CX	LRRIQ4	SNP	Silent	3	169546579	G	A	45	62
BRCA	TCGA-A2-A0CX	FXR1	SNP	Missense_Mutation	3	180694051	G	C	33	88
BRCA	TCGA-A2-A0CX	IL1RAP	SNP	Missense_Mutation	3	190338161	G	C	48	76
BRCA	TCGA-A2-A0CX	KCNH8	SNP	Missense_Mutation	3	19389427	G	T	45	100
BRCA	TCGA-A2-A0CX	DLG1	SNP	Nonsense_Mutation	3	196846393	G	A	45	92
BRCA	TCGA-A2-A0CX	NEK10	SNP	Nonsense_Mutation	3	27203970	G	A	37	65
BRCA	TCGA-A2-A0CX	EPM2AIP1	SNP	Missense_Mutation	3	37032949	G	C	45	76
BRCA	TCGA-A2-A0CX	EPM2AIP1	SNP	Missense_Mutation	3	37033064	G	A	45	58
BRCA	TCGA-A2-A0CX	SCN5A	SNP	Missense_Mutation	3	38645489	C	T	31	96
BRCA	TCGA-A2-A0CX	TMEM89	SNP	Nonsense_Mutation	3	48658405	G	C	45	74
BRCA	TCGA-A2-A0CX	WDR82	SNP	Missense_Mutation	3	52291511	C	A	29	98
BRCA	TCGA-A2-A0CX	WDR82	SNP	Silent	3	52293748	C	T	29	52
BRCA	TCGA-A2-A0CX	APPL1	SNP	Missense_Mutation	3	57272085	G	A	43	70
BRCA	TCGA-A2-A0CX	NSUN3	SNP	Nonsense_Mutation	3	93803063	C	T	29	68
BRCA	TCGA-A2-A0CX	SEC24D	SNP	Missense_Mutation	4	119653922	G	A	33	83
BRCA	TCGA-A2-A0CX	LETM1	SNP	Missense_Mutation	4	1827346	C	T	31	95
BRCA	TCGA-A2-A0CX	OCIAD1	SNP	Missense_Mutation	4	48859365	G	C	33	56
BRCA	TCGA-A2-A0CX	EVC	SNP	Missense_Mutation	4	5755608	G	A	33	58
BRCA	TCGA-A2-A0CX	CABS1	SNP	Missense_Mutation	4	71201101	C	A	29	51
BRCA	TCGA-A2-A0CX	AMBN	SNP	Missense_Mutation	4	71469002	C	G	32	67
BRCA	TCGA-A2-A0CX	PAQR3	SNP	Silent	4	79845078	C	T	29	56
BRCA	TCGA-A2-A0CX	PKD2L2	SNP	Missense_Mutation	5	137230240	G	A	47	54
BRCA	TCGA-A2-A0CX	CDC23	SNP	Missense_Mutation	5	137542199	C	T	29	70
BRCA	TCGA-A2-A0CX	HSPA9	SNP	Nonsense_Mutation	5	137909537	G	C	45	87
BRCA	TCGA-A2-A0CX	PCDHA10	SNP	Silent	5	140236992	G	A	40	43
BRCA	TCGA-A2-A0CX	PCDHAC1	SNP	Silent	5	140306796	C	T	28	61
BRCA	TCGA-A2-A0CX	PCDHGA2	SNP	Silent	5	140719243	G	C	37	27
BRCA	TCGA-A2-A0CX	SH3TC2	SNP	Missense_Mutation	5	148427519	G	A	41	79
BRCA	TCGA-A2-A0CX	ABLIM3	SNP	Missense_Mutation	5	148629383	C	T	31	73
BRCA	TCGA-A2-A0CX	DCTN4	SNP	Splice_site	5	150112930	C	T	23	69
BRCA	TCGA-A2-A0CX	ERGIC1	SNP	Silent	5	172341817	C	T	31	54
BRCA	TCGA-A2-A0CX	DDX41	SNP	Missense_Mutation	5	176942966	G	A	34	100
BRCA	TCGA-A2-A0CX	SDHA	SNP	Silent	5	236617	G	A	39	38
BRCA	TCGA-A2-A0CX	ITGA1	SNP	Missense_Mutation	5	52214648	G	A	41	67
BRCA	TCGA-A2-A0CX	FASTKD3	SNP	Nonsense_Mutation	5	7867557	C	A	30	63
BRCA	TCGA-A2-A0CX	ANKRD34B	SNP	Missense_Mutation	5	79855559	C	G	32	64
BRCA	TCGA-A2-A0CX	T	DEL	Frame_Shift_Del	6	166580304	C	-	30	96
BRCA	TCGA-A2-A0CX	HIST1H1D	SNP	Missense_Mutation	6	26234687	C	T	18	76
BRCA	TCGA-A2-A0CX	TRIM10	SNP	Missense_Mutation	6	30126372	G	A	33	59
BRCA	TCGA-A2-A0CX	MDC1	SNP	Missense_Mutation	6	30679725	C	T	30	72
BRCA	TCGA-A2-A0CX	BRPF3	SNP	Missense_Mutation	6	36168619	G	C	33	98
BRCA	TCGA-A2-A0CX	DST	SNP	Silent	6	56480618	C	T	24	53
BRCA	TCGA-A2-A0CX	MTO1	SNP	Missense_Mutation	6	74171591	G	A	37	58
BRCA	TCGA-A2-A0CX	MDN1	SNP	Silent	6	90450019	C	T	29	56
BRCA	TCGA-A2-A0CX		SNP	Missense_Mutation	7	100609845	G	A	45	64
BRCA	TCGA-A2-A0CX	C7orf60	SNP	Missense_Mutation	7	112461888	C	T	29	100
BRCA	TCGA-A2-A0CX	BPGM	SNP	Silent	7	134346544	G	A	45	60
BRCA	TCGA-A2-A0CX	TAS2R3	SNP	Silent	7	141464471	C	T	29	58
BRCA	TCGA-A2-A0CX	PRSS1	SNP	Silent	7	142459748	C	T	29	77
BRCA	TCGA-A2-A0CX	ASIC3	SNP	Missense_Mutation	7	150746160	G	C	35	77
BRCA	TCGA-A2-A0CX	CYCS	SNP	Splice_Site	7	25163747	C	G	32	62
BRCA	TCGA-A2-A0CX	ZNRF2	SNP	Missense_Mutation	7	30363299	G	A	45	91
BRCA	TCGA-A2-A0CX	RSPH10B2	SNP	Missense_Mutation	7	6836384	G	A	37	66
BRCA	TCGA-A2-A0CX	PION	SNP	Nonsense_Mutation	7	76984911	G	A	45	73
BRCA	TCGA-A2-A0CX	SAMD9	SNP	Missense_Mutation	7	92732577	C	T	30	59
BRCA	TCGA-A2-A0CX	UTP23	SNP	Silent	8	117784063	G	A	33	92
BRCA	TCGA-A2-A0CX	FAM83A	SNP	Missense_Mutation	8	124195521	T	A	58	66
BRCA	TCGA-A2-A0CX	FAM91A1	SNP	Missense_Mutation	8	124811880	C	T	26	100
BRCA	TCGA-A2-A0CX	ADCY8	SNP	Missense_Mutation	8	132051913	C	T	29	99
BRCA	TCGA-A2-A0CX	C8orf31	SNP	Missense_Mutation	8	144124425	G	A	45	46
BRCA	TCGA-A2-A0CX	CDCA2	SNP	Missense_Mutation	8	25319710	G	C	33	49
BRCA	TCGA-A2-A0CX	RAB11FIP1	SNP	Missense_Mutation	8	37729955	G	A	38	53
BRCA	TCGA-A2-A0CX	HOOK3	SNP	Missense_Mutation	8	42852707	G	A	33	84
BRCA	TCGA-A2-A0CX	SULF1	SNP	Missense_Mutation	8	70536263	G	A	33	83
BRCA	TCGA-A2-A0CX	INTS8	SNP	Silent	8	95877829	C	T	32	62
BRCA	TCGA-A2-A0CX	DBC1	SNP	Silent	9	121929782	C	G	30	64
BRCA	TCGA-A2-A0CX	NAIF1	SNP	Missense_Mutation	9	130825724	C	T	32	77
BRCA	TCGA-A2-A0CX	DOLK	SNP	Missense_Mutation	9	131708299	C	A	32	51
BRCA	TCGA-A2-A0CX	NUP188	SNP	Silent	9	131768007	C	T	31	35
BRCA	TCGA-A2-A0CX	IFNA17	SNP	Silent	9	21227804	C	A	29	51
BRCA	TCGA-A2-A0CX	TPM2	SNP	Silent	9	35685268	C	T	32	69
BRCA	TCGA-A2-A0CX	FAM75B	SNP	Missense_Mutation	9	84676058	T	C	52	57
BRCA	TCGA-A2-A0CX	S1PR3	SNP	Missense_Mutation	9	91616909	T	C	52	71
BRCA	TCGA-A2-A0CZ	FAM73A	SNP	Missense_Mutation	1	78269078	A	T	7	66
BRCA	TCGA-A2-A0CZ	GATA3	INS	Frame_Shift_Ins	10	8115874	-	T	31	85
BRCA	TCGA-A2-A0CZ	TMEM132B	SNP	Nonsense_Mutation	12	125834676	C	A	31	62
BRCA	TCGA-A2-A0CZ	SEMA6D	SNP	Missense_Mutation	15	48056083	G	A	37	100
BRCA	TCGA-A2-A0CZ	TLN2	SNP	Missense_Mutation	15	62999439	T	C	59	92
BRCA	TCGA-A2-A0CZ	ALLC	SNP	Silent	2	3721691	T	C	63	60
BRCA	TCGA-A2-A0CZ	SPRED2	DEL	Frame_Shift_Del	2	65540801	G	-	35	79
BRCA	TCGA-A2-A0CZ	TMC2	SNP	Missense_Mutation	20	2582823	G	A	40	97
BRCA	TCGA-A2-A0CZ	XIAP	SNP	Missense_Mutation	23	123019870	T	A	53	54
BRCA	TCGA-A2-A0CZ	TMPRSS7	SNP	Missense_Mutation	3	111766802	G	A	34	56
BRCA	TCGA-A2-A0CZ	PRRC2A	DEL	Frame_Shift_Del	6	31600113	GG	-	47	54
BRCA	TCGA-A2-A0CZ	HLA-DQB1	SNP	Silent	6	32632633	C	T	21	62
BRCA	TCGA-A2-A0D0	CASQ2	SNP	Missense_Mutation	1	116280890	C	G	32	87
BRCA	TCGA-A2-A0D0	TTF2	SNP	Silent	1	117634518	G	A	48	65
BRCA	TCGA-A2-A0D0	TCHH	SNP	Missense_Mutation	1	152082308	C	T	30	50
BRCA	TCGA-A2-A0D0	KCNN3	SNP	Missense_Mutation	1	154841540	C	G	32	94
BRCA	TCGA-A2-A0D0	RGL1	SNP	Silent	1	183816895	C	T	20	69
BRCA	TCGA-A2-A0D0	TPR	SNP	Missense_Mutation	1	186329484	G	C	33	93
BRCA	TCGA-A2-A0D0	SRRM1	SNP	Silent	1	24975442	G	A	46	58
BRCA	TCGA-A2-A0D0	KHDRBS1	SNP	Splice_Site	1	32502510	G	A	35	97
BRCA	TCGA-A2-A0D0	ZNF33B	SNP	Missense_Mutation	10	43088872	T	C	56	54
BRCA	TCGA-A2-A0D0	C10orf12	SNP	Missense_Mutation	10	98743239	G	A	46	49
BRCA	TCGA-A2-A0D0	PDE3B	SNP	Missense_Mutation	11	14853233	C	G	20	38
BRCA	TCGA-A2-A0D0	HRAS	SNP	Silent	11	534227	G	A	40	46
BRCA	TCGA-A2-A0D0	TNKS1BP1	SNP	Nonsense_Mutation	11	57081323	G	C	45	57
BRCA	TCGA-A2-A0D0	ATXN2	SNP	Silent	12	111926531	T	C	54	69
BRCA	TCGA-A2-A0D0	HECTD4	SNP	Missense_Mutation	12	112607429	C	G	17	97
BRCA	TCGA-A2-A0D0	FBXW8	SNP	Missense_Mutation	12	117465850	G	A	38	62
BRCA	TCGA-A2-A0D0	SLCO1C1	SNP	Silent	12	20885886	G	C	43	52
BRCA	TCGA-A2-A0D0	STK38L	SNP	Missense_Mutation	12	27450761	T	G	64	54
BRCA	TCGA-A2-A0D0	ENSG00000118976	SNP	Silent	12	3948638	T	A	54	47
BRCA	TCGA-A2-A0D0	OR6C2	SNP	Missense_Mutation	12	55846550	A	G	12	71
BRCA	TCGA-A2-A0D0	VAMP1	SNP	Splice_Site	12	6574108	C	G	32	100
BRCA	TCGA-A2-A0D0	PPFIA2	DEL	In_Frame_Del	12	81688650	GGAAACCATCTC	-	43	49
BRCA	TCGA-A2-A0D0	MRPL52	SNP	Silent	14	23302667	A	G	9	56
BRCA	TCGA-A2-A0D0	RBM23	SNP	Silent	14	23374450	G	A	38	49
BRCA	TCGA-A2-A0D0	TYRO3	SNP	Missense_Mutation	15	41859670	G	A	38	65
BRCA	TCGA-A2-A0D0	SMAD6	SNP	Missense_Mutation	15	67073661	G	A	40	86
BRCA	TCGA-A2-A0D0	C16orf62	SNP	Missense_Mutation	16	19711758	C	G	19	59
BRCA	TCGA-A2-A0D0	ABCA3	SNP	Missense_Mutation	16	2335631	C	T	31	59
BRCA	TCGA-A2-A0D0	ABCA3	SNP	Missense_Mutation	16	2336930	C	G	30	96
BRCA	TCGA-A2-A0D0	LOC100289169	SNP	Missense_Mutation	16	29063669	C	G	32	51
BRCA	TCGA-A2-A0D0	SLC12A4	SNP	Missense_Mutation	16	67995581	G	C	37	100
BRCA	TCGA-A2-A0D0	CAMTA2	SNP	Silent	17	4872988	C	T	26	50
BRCA	TCGA-A2-A0D0	SLC2A4	SNP	Nonstop_Mutation	17	7187850	T	C	55	41
BRCA	TCGA-A2-A0D0	MRPS7	SNP	Silent	17	73261941	G	A	41	55
BRCA	TCGA-A2-A0D0	TP53	SNP	Nonsense_Mutation	17	7578263	G	A	39	67
BRCA	TCGA-A2-A0D0	ZNF844	SNP	Missense_Mutation	19	12186728	C	A	30	26
BRCA	TCGA-A2-A0D0	NWD1	SNP	Silent	19	16860842	C	T	18	61
BRCA	TCGA-A2-A0D0	ATP4A	SNP	Splice_site	19	36046578	T	G	56	75
BRCA	TCGA-A2-A0D0	VAV1	SNP	Missense_Mutation	19	6828862	G	A	37	92
BRCA	TCGA-A2-A0D0	GREB1	SNP	Missense_Mutation	2	11773164	G	A	48	57
BRCA	TCGA-A2-A0D0	ACVR1	SNP	Missense_Mutation	2	158636987	C	T	19	77
BRCA	TCGA-A2-A0D0	CCDC141	SNP	Missense_Mutation	2	179702066	A	C	2	43
BRCA	TCGA-A2-A0D0	PAX3	SNP	Missense_Mutation	2	223065949	T	C	52	52
BRCA	TCGA-A2-A0D0	SLC5A6	SNP	Missense_Mutation	2	27428252	C	G	19	70
BRCA	TCGA-A2-A0D0	BIRC6	SNP	Missense_Mutation	2	32738164	G	A	36	100
BRCA	TCGA-A2-A0D0	AUP1	SNP	Missense_Mutation	2	74754449	C	G	29	74
BRCA	TCGA-A2-A0D0	POLR1A	SNP	Silent	2	86327172	G	A	38	51
BRCA	TCGA-A2-A0D0	POLR1A	SNP	Silent	2	86327220	G	A	40	45
BRCA	TCGA-A2-A0D0	ASTL	SNP	Missense_Mutation	2	96795705	G	C	42	63
BRCA	TCGA-A2-A0D0	ASXL1	SNP	Silent	20	31022690	A	G	9	53
BRCA	TCGA-A2-A0D0	MYH7B	SNP	Missense_Mutation	20	33575611	G	C	39	73
BRCA	TCGA-A2-A0D0	KCNJ15	SNP	Missense_Mutation	21	39671648	G	T	45	52
BRCA	TCGA-A2-A0D0	SMCR7L	SNP	Missense_Mutation	22	39910045	T	C	49	94
BRCA	TCGA-A2-A0D0	GPR128	SNP	Silent	3	100354667	T	G	55	46
BRCA	TCGA-A2-A0D0	PARP9	DEL	Frame_Shift_Del	3	122274300	T	-	52	77
BRCA	TCGA-A2-A0D0	CSPG5	SNP	Missense_Mutation	3	47618393	C	T	31	95
BRCA	TCGA-A2-A0D0	FBXW7	SNP	Missense_Mutation	4	153247366	C	T	31	100
BRCA	TCGA-A2-A0D0	SNX25	SNP	Splice_Site	4	186263128	A	G	3	87
BRCA	TCGA-A2-A0D0	FAT1	SNP	Missense_Mutation	4	187627851	T	C	64	65
BRCA	TCGA-A2-A0D0	PLEKHG4B	SNP	Missense_Mutation	5	182269	C	T	30	82
BRCA	TCGA-A2-A0D0	ARSK	SNP	Missense_Mutation	5	94939216	C	G	30	41
BRCA	TCGA-A2-A0D0	RMND1	SNP	Silent	6	151748625	T	A	61	50
BRCA	TCGA-A2-A0D0	CNKSR3	SNP	Silent	6	154754627	C	T	23	43
BRCA	TCGA-A2-A0D0	COL19A1	SNP	Missense_Mutation	6	70866053	G	T	43	67
BRCA	TCGA-A2-A0D0	KIAA1147	SNP	Missense_Mutation	7	141362534	G	C	44	54
BRCA	TCGA-A2-A0D0	DLC1	SNP	Missense_Mutation	8	12956886	C	G	22	100
BRCA	TCGA-A2-A0D0	FAM49B	SNP	Missense_Mutation	8	130867866	A	C	8	61
BRCA	TCGA-A2-A0D0	CHD7	DEL	In_Frame_Del	8	61729034	CAGGGC	-	25	100
BRCA	TCGA-A2-A0D0	SGK3	SNP	Silent	8	67748219	T	C	51	61
BRCA	TCGA-A2-A0D0	ARFGEF1	SNP	Nonsense_Mutation	8	68208734	G	A	45	99
BRCA	TCGA-A2-A0D0	SLC27A4	SNP	Missense_Mutation	9	131115713	A	G	4	89
BRCA	TCGA-A2-A0D0	CA9	SNP	Missense_Mutation	9	35675543	C	G	21	74
BRCA	TCGA-A2-A0D1	SPAG17	SNP	Missense_Mutation	1	118624074	T	G	51	49
BRCA	TCGA-A2-A0D1	FMO5	SNP	Missense_Mutation	1	146680607	G	T	35	68
BRCA	TCGA-A2-A0D1	MKI67	SNP	Silent	10	129921415	G	A	41	46
BRCA	TCGA-A2-A0D1	CRY2	SNP	Silent	11	45882531	G	A	33	59
BRCA	TCGA-A2-A0D1	OR5A1	SNP	Nonsense_Mutation	11	59211431	C	T	27	53
BRCA	TCGA-A2-A0D1	UBC	INS	Frame_Shift_Ins	12	125396685	-	G	51	86
BRCA	TCGA-A2-A0D1	KCNA5	SNP	Silent	12	5153647	C	T	32	53
BRCA	TCGA-A2-A0D1	TGM1	SNP	Silent	14	24724646	G	A	37	45
BRCA	TCGA-A2-A0D1	MNAT1	SNP	Missense_Mutation	14	61285489	G	C	33	71
BRCA	TCGA-A2-A0D1	UMOD	SNP	Missense_Mutation	16	20357504	C	A	30	57
BRCA	TCGA-A2-A0D1	SALL1	SNP	Missense_Mutation	16	51174941	C	T	27	65
BRCA	TCGA-A2-A0D1	HELZ	SNP	Missense_Mutation	17	65184713	C	T	19	98
BRCA	TCGA-A2-A0D1	TP53	SNP	Nonsense_Mutation	17	7576855	G	A	45	57
BRCA	TCGA-A2-A0D1	FFAR1	SNP	Missense_Mutation	19	35843061	G	A	40	65
BRCA	TCGA-A2-A0D1	MUC16	SNP	Missense_Mutation	19	9084121	G	A	40	43
BRCA	TCGA-A2-A0D1	MYT1L	SNP	Missense_Mutation	2	1843052	C	G	32	58
BRCA	TCGA-A2-A0D1	HDLBP	SNP	Missense_Mutation	2	242202140	T	C	53	50
BRCA	TCGA-A2-A0D1	EML6	SNP	Silent	2	55119763	G	T	42	51
BRCA	TCGA-A2-A0D1	NAT8	SNP	Missense_Mutation	2	73868674	G	T	46	56
BRCA	TCGA-A2-A0D1	BPIFB4	SNP	Missense_Mutation	20	31671605	G	A	41	58
BRCA	TCGA-A2-A0D1	SEZ6L	DEL	Frame_Shift_Del	22	26771550	CGGCAGCA	-	27	93
BRCA	TCGA-A2-A0D1	NXF3	SNP	Missense_Mutation	23	102339332	G	C	41	67
BRCA	TCGA-A2-A0D1	IDH3G	SNP	Missense_Mutation	23	153055671	A	G	7	63
BRCA	TCGA-A2-A0D1	PDHA1	SNP	Silent	23	19371264	C	T	19	51
BRCA	TCGA-A2-A0D1	SLC7A3	SNP	Silent	23	70149701	G	A	38	41
BRCA	TCGA-A2-A0D1	PLCL2	SNP	Missense_Mutation	3	17053177	A	T	12	91
BRCA	TCGA-A2-A0D1	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-A2-A0D1	XCR1	SNP	Missense_Mutation	3	46063416	C	G	32	51
BRCA	TCGA-A2-A0D1	DDIT4L	SNP	Silent	4	101108852	T	C	55	54
BRCA	TCGA-A2-A0D1	USP53	SNP	Silent	4	120181041	A	G	14	47
BRCA	TCGA-A2-A0D1	MAML3	SNP	Silent	4	140811603	G	A	45	75
BRCA	TCGA-A2-A0D1	ARHGAP10	SNP	Silent	4	148985600	G	A	40	21
BRCA	TCGA-A2-A0D1	PDE6A	SNP	Silent	5	149310672	G	A	41	61
BRCA	TCGA-A2-A0D1	GPR98	SNP	Nonsense_Mutation	5	90052316	G	T	45	53
BRCA	TCGA-A2-A0D1	ACAT2	SNP	Silent	6	160189620	T	A	58	38
BRCA	TCGA-A2-A0D1	IGF2R	SNP	Silent	6	160489290	T	C	55	43
BRCA	TCGA-A2-A0D1	RNF133	SNP	Silent	7	122338268	T	G	58	40
BRCA	TCGA-A2-A0D1	PRRT4	SNP	Missense_Mutation	7	127999474	G	A	40	75
BRCA	TCGA-A2-A0D1	ENSG00000185040	SNP	Missense_Mutation	7	76169673	G	C	33	54
BRCA	TCGA-A2-A0D1	LRP12	SNP	Missense_Mutation	8	105503535	G	A	41	99
BRCA	TCGA-A2-A0D1	C8orf40	SNP	Missense_Mutation	8	42407725	G	A	45	78
BRCA	TCGA-A2-A0D1	DCAF4L2	SNP	Missense_Mutation	8	88885215	C	T	19	53
BRCA	TCGA-A2-A0D1	GRIN1	SNP	Missense_Mutation	9	140052856	G	C	41	88
BRCA	TCGA-A2-A0D1	UNC13B	SNP	Missense_Mutation	9	35231138	C	T	18	96
BRCA	TCGA-A2-A0D1	KIAA2026	SNP	Silent	9	6007235	G	A	34	67
BRCA	TCGA-A2-A0D2	DAP3	SNP	Missense_Mutation	1	155707956	G	A	33	73
BRCA	TCGA-A2-A0D2	TTC24	DEL	In_Frame_Del	1	156551729	GGCCGCAGCCCT	-	43	73
BRCA	TCGA-A2-A0D2	CD46	SNP	Splice_Site	1	207940997	G	C	44	56
BRCA	TCGA-A2-A0D2	CHRM3	SNP	Silent	1	240071942	G	T	41	49
BRCA	TCGA-A2-A0D2	AHCTF1	SNP	Silent	1	247014469	C	G	17	51
BRCA	TCGA-A2-A0D2	MSH4	SNP	Silent	1	76365305	T	C	52	55
BRCA	TCGA-A2-A0D2	LRRC8C	SNP	Missense_Mutation	1	90178433	G	C	33	70
BRCA	TCGA-A2-A0D2	BCAR3	SNP	Missense_Mutation	1	94054925	G	T	33	96
BRCA	TCGA-A2-A0D2	SLC39A12	SNP	Missense_Mutation	10	18292185	G	T	47	47
BRCA	TCGA-A2-A0D2	TET1	SNP	Silent	10	70406740	A	G	2	45
BRCA	TCGA-A2-A0D2	CARD17	SNP	Missense_Mutation	11	104971342	G	T	34	41
BRCA	TCGA-A2-A0D2	ROBO3	SNP	Silent	11	124742417	C	T	30	54
BRCA	TCGA-A2-A0D2	DDX25	SNP	Splice_site	11	125787146	G	A	35	81
BRCA	TCGA-A2-A0D2	OR52R1	SNP	Missense_Mutation	11	4825420	A	T	11	63
BRCA	TCGA-A2-A0D2	OR10Q1	SNP	Missense_Mutation	11	57995968	T	A	49	66
BRCA	TCGA-A2-A0D2	GLYATL2	SNP	Missense_Mutation	11	58602060	A	G	13	48
BRCA	TCGA-A2-A0D2	KCNK4	DEL	Frame_Shift_Del	11	64064433	CAGCGCCTTCTTTTTCT	-	25	55
BRCA	TCGA-A2-A0D2	SUV420H1	SNP	Missense_Mutation	11	67926140	G	T	47	96
BRCA	TCGA-A2-A0D2	PAAF1	SNP	Silent	11	73627700	T	C	58	52
BRCA	TCGA-A2-A0D2	PHC1	SNP	Silent	12	9085307	T	C	53	40
BRCA	TCGA-A2-A0D2	ACTN1	SNP	Silent	14	69343865	G	C	38	27
BRCA	TCGA-A2-A0D2	MAPK6	SNP	Missense_Mutation	15	52338804	G	C	33	85
BRCA	TCGA-A2-A0D2	WDR93	SNP	Missense_Mutation	15	90278750	G	A	48	59
BRCA	TCGA-A2-A0D2	VWA3A	SNP	Missense_Mutation	16	22128094	C	T	32	57
BRCA	TCGA-A2-A0D2	PRKCB	SNP	Silent	16	24135278	G	C	46	55
BRCA	TCGA-A2-A0D2	SEC14L5	DEL	Frame_Shift_Del	16	5058578	G	-	35	50
BRCA	TCGA-A2-A0D2	PRDM7	SNP	Missense_Mutation	16	90124710	C	G	18	51
BRCA	TCGA-A2-A0D2	MYH8	SNP	Missense_Mutation	17	10297607	G	A	34	77
BRCA	TCGA-A2-A0D2	SRCIN1	SNP	Missense_Mutation	17	36700173	A	C	6	62
BRCA	TCGA-A2-A0D2	ANKFY1	SNP	Missense_Mutation	17	4120392	A	G	8	70
BRCA	TCGA-A2-A0D2	TANC2	SNP	Missense_Mutation	17	61473132	G	T	48	100
BRCA	TCGA-A2-A0D2	TP53	DEL	Frame_Shift_Del	17	7576885	TCTTCTTTGGC	-	62	70
BRCA	TCGA-A2-A0D2	TBCD	SNP	Missense_Mutation	17	80765535	C	T	25	85
BRCA	TCGA-A2-A0D2	FHOD3	SNP	Missense_Mutation	18	34273180	A	G	14	74
BRCA	TCGA-A2-A0D2	ENSG00000225607	DEL	Frame_Shift_Del	19	15881928	AGGCGGCAGGCCCTGCGGAAGCGCCA	-	7	57
BRCA	TCGA-A2-A0D2	USHBP1	SNP	Missense_Mutation	19	17370427	C	T	28	48
BRCA	TCGA-A2-A0D2	SUGP1	SNP	Missense_Mutation	19	19407862	C	G	24	43
BRCA	TCGA-A2-A0D2	MLL4	SNP	Missense_Mutation	19	36229228	G	T	41	98
BRCA	TCGA-A2-A0D2	SPTBN4	SNP	Missense_Mutation	19	41063136	T	C	54	85
BRCA	TCGA-A2-A0D2	PLIN4	SNP	Missense_Mutation	19	4508875	G	A	39	75
BRCA	TCGA-A2-A0D2	MCOLN1	SNP	Missense_Mutation	19	7598649	C	G	22	45
BRCA	TCGA-A2-A0D2	FBN3	SNP	Silent	19	8140058	A	G	8	46
BRCA	TCGA-A2-A0D2	SCN3A	SNP	Missense_Mutation	2	165997183	G	C	35	99
BRCA	TCGA-A2-A0D2	PUM2	SNP	Missense_Mutation	2	20483175	G	C	36	100
BRCA	TCGA-A2-A0D2	PIKFYVE	SNP	Missense_Mutation	2	209190734	C	G	32	79
BRCA	TCGA-A2-A0D2	DNMT3A	SNP	Missense_Mutation	2	25463541	G	C	41	98
BRCA	TCGA-A2-A0D2	CAPN13	SNP	Missense_Mutation	2	30987066	C	T	30	49
BRCA	TCGA-A2-A0D2	C20orf94	SNP	Silent	20	10603922	C	T	18	57
BRCA	TCGA-A2-A0D2	PREX1	SNP	Missense_Mutation	20	47309216	C	T	21	100
BRCA	TCGA-A2-A0D2	TH1L	SNP	Missense_Mutation	20	57562859	C	A	20	81
BRCA	TCGA-A2-A0D2	ANGPT4	SNP	Missense_Mutation	20	865877	G	C	34	60
BRCA	TCGA-A2-A0D2	C21orf128	SNP	Missense_Mutation	21	43523920	C	G	22	53
BRCA	TCGA-A2-A0D2	MOV10L1	SNP	Missense_Mutation	22	50580592	C	G	22	67
BRCA	TCGA-A2-A0D2	LAMP2	SNP	Silent	23	119562414	G	C	34	72
BRCA	TCGA-A2-A0D2	MAGEC1	DEL	Frame_Shift_Del	23	140993605	GCTTTATTGAGTATTTTCCA	-	46	58
BRCA	TCGA-A2-A0D2	PDZD4	SNP	Silent	23	153068871	G	A	40	43
BRCA	TCGA-A2-A0D2	RPGR	SNP	Missense_Mutation	23	38160592	G	A	37	95
BRCA	TCGA-A2-A0D2	PAGE5	SNP	Missense_Mutation	23	55248235	G	C	35	57
BRCA	TCGA-A2-A0D2	MTMR8	SNP	Missense_Mutation	23	63548744	C	A	21	51
BRCA	TCGA-A2-A0D2	AWAT1	SNP	Missense_Mutation	23	69458163	A	T	3	66
BRCA	TCGA-A2-A0D2	ZCCHC5	SNP	Silent	23	77913570	C	T	27	47
BRCA	TCGA-A2-A0D2	CD86	SNP	Silent	3	121825277	G	C	37	47
BRCA	TCGA-A2-A0D2	CASR	SNP	Missense_Mutation	3	122002718	C	A	17	66
BRCA	TCGA-A2-A0D2	KLHL6	SNP	Missense_Mutation	3	183225935	G	A	40	56
BRCA	TCGA-A2-A0D2	TP63	SNP	Silent	3	189608638	C	T	21	84
BRCA	TCGA-A2-A0D2	SLC25A38	SNP	Missense_Mutation	3	39436042	G	A	42	67
BRCA	TCGA-A2-A0D2	PBRM1	SNP	Missense_Mutation	3	52651338	C	T	29	87
BRCA	TCGA-A2-A0D2	INPP4B	SNP	Missense_Mutation	4	143129611	G	C	46	90
BRCA	TCGA-A2-A0D2	FRAS1	SNP	Missense_Mutation	4	79353539	G	C	33	53
BRCA	TCGA-A2-A0D2	DAB2	SNP	Missense_Mutation	5	39377250	C	T	21	62
BRCA	TCGA-A2-A0D2	CENPK	SNP	Silent	5	64850678	A	G	16	57
BRCA	TCGA-A2-A0D2	GCNT4	SNP	Missense_Mutation	5	74325681	G	C	36	62
BRCA	TCGA-A2-A0D2	HIST1H2BA	DEL	In_Frame_Del	6	25727483	GCACCAAGGCTGTCACTAAGTACACCA	-	42	92
BRCA	TCGA-A2-A0D2	LRFN2	SNP	Missense_Mutation	6	40400824	G	A	38	80
BRCA	TCGA-A2-A0D2	PTK7	SNP	Missense_Mutation	6	43100201	C	A	28	72
BRCA	TCGA-A2-A0D2	TDRD6	SNP	Missense_Mutation	6	46659314	C	T	28	74
BRCA	TCGA-A2-A0D2	COL9A1	SNP	Missense_Mutation	6	70981371	C	T	19	58
BRCA	TCGA-A2-A0D2	IMPG1	SNP	Missense_Mutation	6	76657075	T	C	63	53
BRCA	TCGA-A2-A0D2	RELN	SNP	Missense_Mutation	7	103113311	C	T	22	93
BRCA	TCGA-A2-A0D2	DOCK4	SNP	Missense_Mutation	7	111846181	T	C	57	75
BRCA	TCGA-A2-A0D2	HDAC9	SNP	Missense_Mutation	7	19035653	G	A	47	69
BRCA	TCGA-A2-A0D2	CARD11	SNP	Missense_Mutation	7	2959046	C	G	32	70
BRCA	TCGA-A2-A0D2	GHRHR	SNP	Missense_Mutation	7	31014652	C	G	31	42
BRCA	TCGA-A2-A0D2	ZFP41	SNP	Missense_Mutation	8	144332310	G	C	33	52
BRCA	TCGA-A2-A0D2	IDO2	SNP	Silent	8	39871156	C	T	23	13
BRCA	TCGA-A2-A0D2	TRIM55	SNP	Nonsense_Mutation	8	67062591	C	G	29	100
BRCA	TCGA-A2-A0D3	NOTCH2	SNP	Silent	1	120458202	G	A	46	48
BRCA	TCGA-A2-A0D3	DUSP27	SNP	Silent	1	167097767	C	T	19	38
BRCA	TCGA-A2-A0D3	C1orf129	SNP	Nonsense_Mutation	1	170955837	G	T	37	49
BRCA	TCGA-A2-A0D3	CEP350	SNP	Missense_Mutation	1	180047624	G	T	36	37
BRCA	TCGA-A2-A0D3	NLRP3	SNP	Nonsense_Mutation	1	247588840	C	T	23	54
BRCA	TCGA-A2-A0D3	PTPRU	SNP	Missense_Mutation	1	29651722	G	A	39	93
BRCA	TCGA-A2-A0D3	EVI5	SNP	Silent	1	93163492	A	G	16	63
BRCA	TCGA-A2-A0D3	GATA3	INS	Frame_Shift_Ins	10	8111543	-	T	32	43
BRCA	TCGA-A2-A0D3	PKNOX2	SNP	Missense_Mutation	11	125301239	C	T	19	76
BRCA	TCGA-A2-A0D3	C11orf45	SNP	Silent	11	128772497	G	T	34	45
BRCA	TCGA-A2-A0D3	ADAMTS15	SNP	Silent	11	130318913	C	T	23	50
BRCA	TCGA-A2-A0D3	GPHA2	SNP	Silent	11	64702634	T	A	55	37
BRCA	TCGA-A2-A0D3	DDX12	SNP	Missense_Mutation	12	9578178	C	T	31	75
BRCA	TCGA-A2-A0D3	LTA4H	SNP	Silent	12	96409430	G	A	38	58
BRCA	TCGA-A2-A0D3	AHNAK2	SNP	Silent	14	105417114	G	A	40	31
BRCA	TCGA-A2-A0D3	POLI	SNP	Missense_Mutation	18	51820754	T	G	53	58
BRCA	TCGA-A2-A0D3	ZFP30	DEL	Frame_Shift_Del	19	38126198	CATTCCTT	-	17	93
BRCA	TCGA-A2-A0D3	MYH14	SNP	Missense_Mutation	19	50810349	C	T	27	55
BRCA	TCGA-A2-A0D3	MARCH4	SNP	Silent	2	217234735	G	A	38	53
BRCA	TCGA-A2-A0D3	CXCR1	SNP	Missense_Mutation	2	219029099	C	T	27	69
BRCA	TCGA-A2-A0D3	TFIP11	SNP	Missense_Mutation	22	26895384	C	T	29	79
BRCA	TCGA-A2-A0D3	MAGEC3	SNP	Missense_Mutation	23	140985038	C	A	31	49
BRCA	TCGA-A2-A0D3	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A0D3	GRIA2	SNP	Silent	4	158262491	C	T	20	88
BRCA	TCGA-A2-A0D3	IL17B	SNP	Missense_Mutation	5	148756510	G	A	38	52
BRCA	TCGA-A2-A0D3	BAI3	SNP	Nonsense_Mutation	6	70070787	C	T	23	56
BRCA	TCGA-A2-A0D3	DNAJC2	DEL	Frame_Shift_Del	7	102960101	GA	-	45	50
BRCA	TCGA-A2-A0D3	SLC13A1	SNP	Missense_Mutation	7	122768936	G	A	43	89
BRCA	TCGA-A2-A0D3	MLL3	DEL	Frame_Shift_Del	7	152012381	G	-	35	63
BRCA	TCGA-A2-A0D3	SYBU	SNP	Missense_Mutation	8	110588052	A	C	1	91
BRCA	TCGA-A2-A0D3	SLC18A1	SNP	Missense_Mutation	8	20005189	C	A	30	97
BRCA	TCGA-A2-A0D3	NRG1	SNP	Missense_Mutation	8	32613947	G	A	40	81
BRCA	TCGA-A2-A0D4	CD1C	SNP	Missense_Mutation	1	158261173	G	T	36	44
BRCA	TCGA-A2-A0D4	DNHD1	SNP	Missense_Mutation	11	6592127	G	A	38	51
BRCA	TCGA-A2-A0D4	N4BP2L2	SNP	Missense_Mutation	13	33017767	G	A	46	51
BRCA	TCGA-A2-A0D4	TEP1	SNP	Missense_Mutation	14	20876336	A	T	7	71
BRCA	TCGA-A2-A0D4	KTN1	SNP	Silent	14	56114770	G	A	33	61
BRCA	TCGA-A2-A0D4	KIAA0586	SNP	Missense_Mutation	14	58941356	C	G	32	62
BRCA	TCGA-A2-A0D4	SLC24A4	SNP	Missense_Mutation	14	92958577	C	T	28	83
BRCA	TCGA-A2-A0D4	IQCH	SNP	Missense_Mutation	15	67782366	T	C	61	73
BRCA	TCGA-A2-A0D4	SPTBN4	SNP	Missense_Mutation	19	41038673	G	A	37	83
BRCA	TCGA-A2-A0D4	SLC4A10	SNP	Silent	2	162711543	T	G	53	48
BRCA	TCGA-A2-A0D4	NBEAL1	SNP	Missense_Mutation	2	204001452	G	T	41	67
BRCA	TCGA-A2-A0D4	KIF3C	SNP	Missense_Mutation	2	26204266	C	T	26	97
BRCA	TCGA-A2-A0D4	GUCY2F	SNP	Missense_Mutation	23	108718511	C	T	19	89
BRCA	TCGA-A2-A0D4	ALAS2	SNP	Missense_Mutation	23	55039950	G	T	44	68
BRCA	TCGA-A2-A0D4	ZCCHC5	SNP	Missense_Mutation	23	77912638	T	A	60	54
BRCA	TCGA-A2-A0D4	PABPC5	SNP	Missense_Mutation	23	90690698	C	A	28	91
BRCA	TCGA-A2-A0D4	IQCB1	SNP	Missense_Mutation	3	121508941	T	C	49	59
BRCA	TCGA-A2-A0D4	CHST2	DEL	Frame_Shift_Del	3	142841031	T	-	51	89
BRCA	TCGA-A2-A0D4	PDS5A	DEL	Frame_Shift_Del	4	39839575	TCCTGACCCACTGCAGCTCTCTTCCT	-	54	79
BRCA	TCGA-A2-A0D4	PCDHA5	SNP	Missense_Mutation	5	140202883	C	T	31	62
BRCA	TCGA-A2-A0D4	MED23	SNP	Missense_Mutation	6	131926396	C	A	20	100
BRCA	TCGA-A2-A0D4	KIAA0319	INS	Splice_Site	6	24566822	-	A	29	57
BRCA	TCGA-A2-A0D4	MUC17	SNP	Silent	7	100676653	T	A	54	45
BRCA	TCGA-A2-A0D4	CPA1	SNP	Silent	7	130027699	C	T	17	52
BRCA	TCGA-A2-A0EM	CPN1	SNP	Missense_Mutation	10	101835672	G	A	42	55
BRCA	TCGA-A2-A0EM	MUC2	INS	In_Frame_Ins	11	1092598	-	CAA	30	77
BRCA	TCGA-A2-A0EM	TPP1	SNP	Splice_site	11	6638532	C	T	21	89
BRCA	TCGA-A2-A0EM	MYO7A	SNP	Missense_Mutation	11	76910861	C	A	22	86
BRCA	TCGA-A2-A0EM	RCOR1	SNP	Missense_Mutation	14	103167650	G	T	47	100
BRCA	TCGA-A2-A0EM	PPP1R13B	SNP	Missense_Mutation	14	104224078	G	T	47	73
BRCA	TCGA-A2-A0EM	MAGEL2	SNP	Nonsense_Mutation	15	23890165	G	A	46	70
BRCA	TCGA-A2-A0EM	MYEF2	SNP	Nonsense_Mutation	15	48441260	C	T	26	98
BRCA	TCGA-A2-A0EM	HSP90AB4P	SNP	Missense_Mutation	15	58983683	C	G	20	53
BRCA	TCGA-A2-A0EM	FGF11	SNP	Missense_Mutation	17	7346061	G	A	37	68
BRCA	TCGA-A2-A0EM	CCDC105	SNP	Missense_Mutation	19	15131381	C	T	21	60
BRCA	TCGA-A2-A0EM	XIRP2	SNP	Missense_Mutation	2	168115850	A	T	7	55
BRCA	TCGA-A2-A0EM	PLCB4	SNP	Missense_Mutation	20	9401989	G	A	40	100
BRCA	TCGA-A2-A0EM	ZNF70	SNP	Missense_Mutation	22	24086804	T	C	56	71
BRCA	TCGA-A2-A0EM	GPR143	SNP	Missense_Mutation	23	9716674	C	T	26	90
BRCA	TCGA-A2-A0EM	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-A2-A0EM	GALNT10	SNP	Missense_Mutation	5	153760044	C	G	23	100
BRCA	TCGA-A2-A0EM	HRH2	SNP	Missense_Mutation	5	175110783	G	A	39	85
BRCA	TCGA-A2-A0EM	SGCZ	DEL	Frame_Shift_Del	8	14412415	T	-	57	50
BRCA	TCGA-A2-A0EM	COL27A1	SNP	Missense_Mutation	9	117004482	A	T	8	57
BRCA	TCGA-A2-A0EN	ANP32E	SNP	Splice_site	1	150201406	C	T	24	48
BRCA	TCGA-A2-A0EN	SIPA1L2	SNP	Silent	1	232607134	G	C	39	14
BRCA	TCGA-A2-A0EN	ZP4	SNP	Missense_Mutation	1	238050144	C	T	29	63
BRCA	TCGA-A2-A0EN	CEP104	SNP	Missense_Mutation	1	3750452	G	A	39	65
BRCA	TCGA-A2-A0EN	LRRC7	SNP	Missense_Mutation	1	70505012	G	T	44	97
BRCA	TCGA-A2-A0EN	MYO7A	SNP	Missense_Mutation	11	76900501	G	A	37	97
BRCA	TCGA-A2-A0EN	TMEM132B	SNP	Silent	12	125834884	T	A	54	49
BRCA	TCGA-A2-A0EN	MTUS2	SNP	Silent	13	29933490	G	A	46	55
BRCA	TCGA-A2-A0EN	OLFM4	SNP	Silent	13	53603067	C	T	23	40
BRCA	TCGA-A2-A0EN	ZBTB25	SNP	Missense_Mutation	14	64954287	G	A	43	75
BRCA	TCGA-A2-A0EN	MYH8	SNP	Silent	17	10318470	A	G	14	43
BRCA	TCGA-A2-A0EN	TBX4	SNP	Nonsense_Mutation	17	59560293	C	T	27	62
BRCA	TCGA-A2-A0EN	ARMC7	SNP	Silent	17	73106586	C	T	31	51
BRCA	TCGA-A2-A0EN	SUGP1	SNP	Missense_Mutation	19	19387471	G	A	40	53
BRCA	TCGA-A2-A0EN	LCT	SNP	Missense_Mutation	2	136561583	C	T	30	100
BRCA	TCGA-A2-A0EN	TTN	SNP	Missense_Mutation	2	179456460	G	T	36	89
BRCA	TCGA-A2-A0EN	ANKZF1	SNP	Missense_Mutation	2	220100548	G	A	40	49
BRCA	TCGA-A2-A0EN	PSMD1	INS	Frame_Shift_Ins	2	231937097	-	A	49	53
BRCA	TCGA-A2-A0EN	NLRC4	SNP	Missense_Mutation	2	32475353	G	A	35	55
BRCA	TCGA-A2-A0EN	RBM39	SNP	Missense_Mutation	20	34302208	G	T	34	85
BRCA	TCGA-A2-A0EN	C22orf30	SNP	Silent	22	32072739	G	A	35	48
BRCA	TCGA-A2-A0EN	PHEX	SNP	Missense_Mutation	23	22231059	G	A	43	91
BRCA	TCGA-A2-A0EN	FAM47B	SNP	Missense_Mutation	23	34961961	C	G	20	68
BRCA	TCGA-A2-A0EN	IL2RG	SNP	Missense_Mutation	23	70330750	T	A	49	73
BRCA	TCGA-A2-A0EN	SHROOM2	SNP	Missense_Mutation	23	9862709	C	T	26	51
BRCA	TCGA-A2-A0EN	RASA2	SNP	Splice_Site	3	141292064	G	T	44	98
BRCA	TCGA-A2-A0EN	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A0EN	PIK3CA	SNP	Missense_Mutation	3	178952139	A	T	8	89
BRCA	TCGA-A2-A0EN	MUC4	SNP	Missense_Mutation	3	195489057	C	A	31	70
BRCA	TCGA-A2-A0EN	MSX2	SNP	Missense_Mutation	5	174156285	C	T	30	100
BRCA	TCGA-A2-A0EN	RAB24	SNP	Missense_Mutation	5	176728751	T	C	51	87
BRCA	TCGA-A2-A0EN	AASS	SNP	Missense_Mutation	7	121756793	G	A	40	100
BRCA	TCGA-A2-A0EN	MLL3	DEL	Frame_Shift_Del	7	151859457	T	-	52	49
BRCA	TCGA-A2-A0EN	KIAA0415	SNP	Splice_site	7	4827786	T	A	58	48
BRCA	TCGA-A2-A0EN	SLC29A4	SNP	Missense_Mutation	7	5327487	G	A	40	58
BRCA	TCGA-A2-A0EN	OPRK1	SNP	Missense_Mutation	8	54142147	C	T	19	49
BRCA	TCGA-A2-A0EO	HIST2H2BE	SNP	Missense_Mutation	1	149857851	C	T	31	100
BRCA	TCGA-A2-A0EO	MR1	SNP	Nonsense_Mutation	1	181021547	C	T	29	68
BRCA	TCGA-A2-A0EO	LAPTM5	SNP	Missense_Mutation	1	31206746	C	T	31	75
BRCA	TCGA-A2-A0EO	PNLIPRP3	SNP	Silent	10	118202578	G	A	39	43
BRCA	TCGA-A2-A0EO	PLA2G12B	SNP	Silent	10	74714297	G	A	36	58
BRCA	TCGA-A2-A0EO	DEAF1	SNP	Missense_Mutation	11	687941	C	A	23	93
BRCA	TCGA-A2-A0EO	PDE3A	SNP	Missense_Mutation	12	20782980	G	A	44	53
BRCA	TCGA-A2-A0EO	RAD51AP1	SNP	Missense_Mutation	12	4662226	G	T	36	61
BRCA	TCGA-A2-A0EO	SLC25A30	SNP	Silent	13	45971426	T	A	63	48
BRCA	TCGA-A2-A0EO	MGA	SNP	Silent	15	42041007	A	T	5	59
BRCA	TCGA-A2-A0EO	GPR97	SNP	Missense_Mutation	16	57719640	G	A	44	61
BRCA	TCGA-A2-A0EO	CBFB	SNP	Missense_Mutation	16	67100696	G	A	34	97
BRCA	TCGA-A2-A0EO	MYH13	SNP	Missense_Mutation	17	10236473	G	A	38	72
BRCA	TCGA-A2-A0EO	GPS2	INS	In_Frame_Ins	17	7217829	-	ATT	45	75
BRCA	TCGA-A2-A0EO	ELP2	SNP	Silent	18	33722826	C	T	26	51
BRCA	TCGA-A2-A0EO	ZNF471	SNP	Missense_Mutation	19	57036477	A	T	4	47
BRCA	TCGA-A2-A0EO	DPP10	SNP	Silent	2	116497433	G	A	40	42
BRCA	TCGA-A2-A0EO	SRBD1	SNP	Missense_Mutation	2	45704138	C	T	17	76
BRCA	TCGA-A2-A0EO	CCNL1	DEL	In_Frame_Del	3	156877732	GAAACTTCC	-	45	51
BRCA	TCGA-A2-A0EO	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-A2-A0EO	TRAK1	SNP	Missense_Mutation	3	42226205	G	A	38	97
BRCA	TCGA-A2-A0EO	ENPEP	DEL	Frame_Shift_Del	4	111397624	T	-	51	45
BRCA	TCGA-A2-A0EO	SH3D19	SNP	Missense_Mutation	4	152086824	G	A	48	57
BRCA	TCGA-A2-A0EO	GJA1	SNP	Missense_Mutation	6	121768373	T	G	63	71
BRCA	TCGA-A2-A0EO	RDBP	INS	Frame_Shift_Ins	6	31923041	-	A	41	52
BRCA	TCGA-A2-A0EQ	FAM20B	SNP	Silent	1	179013003	C	T	31	44
BRCA	TCGA-A2-A0EQ	USH2A	SNP	Silent	1	216371889	C	T	29	51
BRCA	TCGA-A2-A0EQ	WDR26	SNP	Silent	1	224592213	A	G	16	46
BRCA	TCGA-A2-A0EQ	ITPKB	SNP	Missense_Mutation	1	226924234	C	G	32	42
BRCA	TCGA-A2-A0EQ	C1orf101	SNP	Missense_Mutation	1	244735979	C	G	32	50
BRCA	TCGA-A2-A0EQ	SDC3	SNP	Silent	1	31349951	C	T	23	36
BRCA	TCGA-A2-A0EQ	LCK	SNP	Silent	1	32741215	C	T	30	45
BRCA	TCGA-A2-A0EQ	GBP7	SNP	Missense_Mutation	1	89613445	C	G	32	49
BRCA	TCGA-A2-A0EQ	OR6X1	SNP	Missense_Mutation	11	123624853	C	A	25	92
BRCA	TCGA-A2-A0EQ	E2F8	SNP	Missense_Mutation	11	19251216	C	T	32	66
BRCA	TCGA-A2-A0EQ	PAMR1	SNP	Missense_Mutation	11	35454330	G	C	33	54
BRCA	TCGA-A2-A0EQ	CHRNA10	SNP	Nonsense_Mutation	11	3687755	G	C	45	99
BRCA	TCGA-A2-A0EQ	TRIM68	SNP	Silent	11	4626420	C	T	29	43
BRCA	TCGA-A2-A0EQ	PITPNM1	SNP	Missense_Mutation	11	67266143	C	T	29	79
BRCA	TCGA-A2-A0EQ	XRRA1	SNP	Silent	11	74559241	C	G	29	38
BRCA	TCGA-A2-A0EQ	GUCY2C	SNP	Missense_Mutation	12	14804406	C	A	23	97
BRCA	TCGA-A2-A0EQ	CELA1	SNP	Missense_Mutation	12	51736377	C	T	28	52
BRCA	TCGA-A2-A0EQ	GPC5	SNP	Missense_Mutation	13	92345967	C	A	17	61
BRCA	TCGA-A2-A0EQ	PSMA3	SNP	Splice_Site	14	58727739	G	A	40	91
BRCA	TCGA-A2-A0EQ	TTLL5	SNP	Missense_Mutation	14	76147917	C	G	19	69
BRCA	TCGA-A2-A0EQ	MAGEL2	SNP	Missense_Mutation	15	23889829	C	T	30	53
BRCA	TCGA-A2-A0EQ	RYR3	SNP	Missense_Mutation	15	34156357	G	C	45	47
BRCA	TCGA-A2-A0EQ	FRMD5	SNP	Missense_Mutation	15	44166157	G	C	45	81
BRCA	TCGA-A2-A0EQ	CELF6	SNP	Missense_Mutation	15	72608235	G	C	33	100
BRCA	TCGA-A2-A0EQ	MCTP2	SNP	Missense_Mutation	15	94945238	T	C	49	67
BRCA	TCGA-A2-A0EQ	GNPTG	SNP	Silent	16	1412632	G	A	41	55
BRCA	TCGA-A2-A0EQ	CCDC64B	SNP	Missense_Mutation	16	3080989	C	A	26	95
BRCA	TCGA-A2-A0EQ	STAT5B	SNP	Missense_Mutation	17	40376874	G	A	39	95
BRCA	TCGA-A2-A0EQ	TP53	DEL	In_Frame_Del	17	7578443	AGA	-	15	76
BRCA	TCGA-A2-A0EQ	METTL4	SNP	Silent	18	2567036	A	G	7	53
BRCA	TCGA-A2-A0EQ	LIPG	SNP	Silent	18	47110100	G	A	45	50
BRCA	TCGA-A2-A0EQ	WDR7	SNP	Missense_Mutation	18	54385213	A	G	8	52
BRCA	TCGA-A2-A0EQ	SMARCA4	SNP	Missense_Mutation	19	11097047	C	T	28	73
BRCA	TCGA-A2-A0EQ	DAPK3	SNP	Silent	19	3964285	C	T	23	23
BRCA	TCGA-A2-A0EQ	PLD3	SNP	Silent	19	40880504	T	G	54	52
BRCA	TCGA-A2-A0EQ	C19orf54	SNP	Missense_Mutation	19	41248631	C	T	29	69
BRCA	TCGA-A2-A0EQ	RANBP2	SNP	Missense_Mutation	2	109371670	G	C	33	50
BRCA	TCGA-A2-A0EQ	ACVR2A	SNP	Missense_Mutation	2	148676122	C	G	24	79
BRCA	TCGA-A2-A0EQ	NR4A2	SNP	Missense_Mutation	2	157184493	C	A	18	100
BRCA	TCGA-A2-A0EQ	FAM171B	SNP	Silent	2	187611928	G	A	45	50
BRCA	TCGA-A2-A0EQ	OTOF	SNP	Missense_Mutation	2	26690299	C	G	32	66
BRCA	TCGA-A2-A0EQ	EPB41L1	SNP	Missense_Mutation	20	34763629	G	A	45	99
BRCA	TCGA-A2-A0EQ	RALGAPB	SNP	Silent	20	37182575	T	G	63	49
BRCA	TCGA-A2-A0EQ	TMEM189-UBE2V1	SNP	Missense_Mutation	20	48760108	C	T	27	58
BRCA	TCGA-A2-A0EQ	ZNF217	SNP	Missense_Mutation	20	52192934	G	A	38	56
BRCA	TCGA-A2-A0EQ	DYRK1A	SNP	Missense_Mutation	21	38850492	G	C	45	52
BRCA	TCGA-A2-A0EQ	DSCAM	SNP	Missense_Mutation	21	41719830	C	A	28	86
BRCA	TCGA-A2-A0EQ	SLC25A18	SNP	Missense_Mutation	22	18072980	G	A	38	49
BRCA	TCGA-A2-A0EQ	DNAJB7	SNP	Missense_Mutation	22	41257265	T	C	60	52
BRCA	TCGA-A2-A0EQ	MCAT	SNP	Missense_Mutation	22	43529357	C	T	31	58
BRCA	TCGA-A2-A0EQ	SMC1B	SNP	Missense_Mutation	22	45782877	A	G	6	70
BRCA	TCGA-A2-A0EQ	STAG2	SNP	Missense_Mutation	23	123199793	A	G	8	88
BRCA	TCGA-A2-A0EQ	AFF2	SNP	Missense_Mutation	23	147733566	C	T	27	53
BRCA	TCGA-A2-A0EQ	ZNF674	SNP	Missense_Mutation	23	46359485	G	C	45	46
BRCA	TCGA-A2-A0EQ	ZNF674	SNP	Missense_Mutation	23	46359952	G	C	45	39
BRCA	TCGA-A2-A0EQ	WDR52	SNP	Missense_Mutation	3	113049481	A	G	4	83
BRCA	TCGA-A2-A0EQ	MRPS22	SNP	Missense_Mutation	3	139071564	G	C	47	95
BRCA	TCGA-A2-A0EQ	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A0EQ	MUC20	SNP	Missense_Mutation	3	195453371	A	G	9	48
BRCA	TCGA-A2-A0EQ	DOCK3	DEL	Frame_Shift_Del	3	50816143	G	-	47	67
BRCA	TCGA-A2-A0EQ	BAP1	SNP	Missense_Mutation	3	52442600	G	C	35	69
BRCA	TCGA-A2-A0EQ	PPP3CA	SNP	Missense_Mutation	4	101982313	C	G	29	100
BRCA	TCGA-A2-A0EQ	FAT4	SNP	Missense_Mutation	4	126238784	C	G	20	64
BRCA	TCGA-A2-A0EQ	EVC2	SNP	Silent	4	5564815	G	C	45	59
BRCA	TCGA-A2-A0EQ	KIAA0825	SNP	Missense_Mutation	5	93739405	G	C	33	64
BRCA	TCGA-A2-A0EQ	RSPH4A	SNP	Missense_Mutation	6	116949275	C	G	30	75
BRCA	TCGA-A2-A0EQ	FNDC1	SNP	Missense_Mutation	6	159644608	C	T	29	99
BRCA	TCGA-A2-A0EQ	LRRC16A	SNP	Silent	6	25471408	C	T	32	56
BRCA	TCGA-A2-A0EQ	TRIM38	SNP	Missense_Mutation	6	25966837	C	G	29	53
BRCA	TCGA-A2-A0EQ	NKAPL	SNP	Missense_Mutation	6	28227456	G	A	33	54
BRCA	TCGA-A2-A0EQ	UBR2	SNP	Missense_Mutation	6	42571368	T	C	61	77
BRCA	TCGA-A2-A0EQ	EYS	SNP	Missense_Mutation	6	65301291	G	A	37	64
BRCA	TCGA-A2-A0EQ	EMID2	SNP	Missense_Mutation	7	101090994	G	C	33	58
BRCA	TCGA-A2-A0EQ	COPG2	SNP	Missense_Mutation	7	130347816	T	G	52	50
BRCA	TCGA-A2-A0EQ	PKD1L1	SNP	Missense_Mutation	7	47968840	C	T	29	52
BRCA	TCGA-A2-A0EQ	ZNF479	SNP	Missense_Mutation	7	57187675	G	T	48	78
BRCA	TCGA-A2-A0EQ	ADCY8	SNP	Missense_Mutation	8	131922104	C	A	23	100
BRCA	TCGA-A2-A0EQ	ADAMDEC1	SNP	Silent	8	24249788	G	A	34	46
BRCA	TCGA-A2-A0EQ	MPDZ	SNP	Missense_Mutation	9	13168444	C	T	29	84
BRCA	TCGA-A2-A0EQ	TUBB4B	SNP	Missense_Mutation	9	140137952	G	A	46	85
BRCA	TCGA-A2-A0ER	NPHP4	SNP	Missense_Mutation	1	5987774	G	A	40	51
BRCA	TCGA-A2-A0ER	HVCN1	SNP	Missense_Mutation	12	111089194	T	G	52	54
BRCA	TCGA-A2-A0ER	RBM19	SNP	Missense_Mutation	12	114352823	G	A	38	84
BRCA	TCGA-A2-A0ER	SIPA1L1	SNP	Silent	14	72138130	A	G	11	58
BRCA	TCGA-A2-A0ER	CCDC33	SNP	Silent	15	74622637	C	T	26	37
BRCA	TCGA-A2-A0ER	ACSM2B	SNP	Missense_Mutation	16	20576133	G	T	44	57
BRCA	TCGA-A2-A0ER	ZNF331	SNP	Silent	19	54081068	G	A	33	61
BRCA	TCGA-A2-A0ER	STEAP3	SNP	Missense_Mutation	2	120012348	C	T	19	62
BRCA	TCGA-A2-A0ER	YSK4	SNP	Missense_Mutation	2	135745540	C	T	25	54
BRCA	TCGA-A2-A0ER	NCKAP1	SNP	Splice_site	2	183848015	T	C	56	91
BRCA	TCGA-A2-A0ER	SLC11A1	SNP	Missense_Mutation	2	219249939	G	A	40	83
BRCA	TCGA-A2-A0ER	TTC7A	SNP	Missense_Mutation	2	47278894	G	A	39	52
BRCA	TCGA-A2-A0ER	HUWE1	SNP	Missense_Mutation	23	53570824	C	T	23	90
BRCA	TCGA-A2-A0ER	CADPS	SNP	Missense_Mutation	3	62385241	C	T	31	100
BRCA	TCGA-A2-A0ER	AADAT	SNP	Silent	4	170991750	G	A	41	53
BRCA	TCGA-A2-A0ER	SLC36A3	SNP	Splice_Site	5	150682787	C	A	19	57
BRCA	TCGA-A2-A0ER	SLC17A4	SNP	Splice_site	6	25769214	T	C	60	48
BRCA	TCGA-A2-A0ER	NCOA2	SNP	Silent	8	71060629	G	A	38	49
BRCA	TCGA-A2-A0ER	SVEP1	SNP	Missense_Mutation	9	113168951	G	C	41	53
BRCA	TCGA-A2-A0ER	PTCH1	SNP	Missense_Mutation	9	98211487	G	A	37	83
BRCA	TCGA-A2-A0ES	TLR7	SNP	Missense_Mutation	23	12904271	A	G	4	89
BRCA	TCGA-A2-A0ES	CCR4	SNP	Silent	3	32995697	G	A	46	57
BRCA	TCGA-A2-A0ES	DNAH8	DEL	Frame_Shift_Del	6	38754658	A	-	12	80
BRCA	TCGA-A2-A0ES	EEF1A1	INS	Frame_Shift_Ins	6	74228775	-	T	8	47
BRCA	TCGA-A2-A0ET	PMVK	SNP	Silent	1	154904864	G	A	41	49
BRCA	TCGA-A2-A0ET	DNM3	SNP	Missense_Mutation	1	172376937	C	T	31	81
BRCA	TCGA-A2-A0ET	PYCR2	SNP	Missense_Mutation	1	226109671	C	A	18	90
BRCA	TCGA-A2-A0ET	GBP4	SNP	Missense_Mutation	1	89661003	C	T	31	88
BRCA	TCGA-A2-A0ET	OR51A4	SNP	Missense_Mutation	11	4967799	G	A	47	62
BRCA	TCGA-A2-A0ET	NAA25	SNP	Silent	12	112513493	G	C	33	55
BRCA	TCGA-A2-A0ET	TMEM132B	SNP	Nonsense_Mutation	12	126139187	C	A	26	70
BRCA	TCGA-A2-A0ET	GPR182	SNP	Missense_Mutation	12	57389412	G	A	34	92
BRCA	TCGA-A2-A0ET	NTN4	SNP	Silent	12	96063918	T	C	52	68
BRCA	TCGA-A2-A0ET	DHRS2	SNP	Nonsense_Mutation	14	24112421	G	T	41	75
BRCA	TCGA-A2-A0ET	FSCB	SNP	Silent	14	44973848	T	C	56	44
BRCA	TCGA-A2-A0ET	CACNA1H	SNP	Silent	16	1270781	C	T	19	53
BRCA	TCGA-A2-A0ET	ZFP90	SNP	Missense_Mutation	16	68591931	G	T	41	56
BRCA	TCGA-A2-A0ET	GREB1L	SNP	Missense_Mutation	18	19098026	T	A	56	78
BRCA	TCGA-A2-A0ET	FAM59A	SNP	Missense_Mutation	18	29867436	G	A	42	98
BRCA	TCGA-A2-A0ET	TMEM161A	SNP	Missense_Mutation	19	19240990	C	A	32	49
BRCA	TCGA-A2-A0ET	ATP1A3	SNP	Missense_Mutation	19	42471431	G	A	39	73
BRCA	TCGA-A2-A0ET	LIPE	SNP	Missense_Mutation	19	42930910	A	C	5	58
BRCA	TCGA-A2-A0ET	IWS1	SNP	Nonsense_Mutation	2	128262380	C	A	30	71
BRCA	TCGA-A2-A0ET	APOB	SNP	Silent	2	21260974	G	A	45	57
BRCA	TCGA-A2-A0ET	LTN1	SNP	Missense_Mutation	21	30316846	C	T	26	62
BRCA	TCGA-A2-A0ET	F11	SNP	Silent	4	187206918	C	T	27	52
BRCA	TCGA-A2-A0ET	TRIO	SNP	Silent	5	14504592	C	T	27	45
BRCA	TCGA-A2-A0ET	IQGAP2	SNP	Nonsense_Mutation	5	75967586	C	A	29	100
BRCA	TCGA-A2-A0ET	MYB	INS	Frame_Shift_Ins	6	135510996	-	T	24	100
BRCA	TCGA-A2-A0ET	FBXO30	SNP	Missense_Mutation	6	146126058	G	A	39	100
BRCA	TCGA-A2-A0ET	UST	SNP	Missense_Mutation	6	149395109	C	T	27	80
BRCA	TCGA-A2-A0ET	UHRF1BP1	SNP	Missense_Mutation	6	34802149	G	A	38	84
BRCA	TCGA-A2-A0ET	C9orf43	SNP	Silent	9	116185749	C	T	23	25
BRCA	TCGA-A2-A0ET	TLN1	SNP	Missense_Mutation	9	35711750	G	A	39	64
BRCA	TCGA-A2-A0EU	ASTN1	SNP	Splice_Site	1	176992539	C	T	18	100
BRCA	TCGA-A2-A0EU	UBR4	SNP	Missense_Mutation	1	19504222	C	T	29	97
BRCA	TCGA-A2-A0EU	MOSC1	SNP	Missense_Mutation	1	220986672	G	A	41	69
BRCA	TCGA-A2-A0EU	MMEL1	SNP	Missense_Mutation	1	2527495	C	T	31	84
BRCA	TCGA-A2-A0EU	CD52	SNP	Missense_Mutation	1	26644515	C	T	27	50
BRCA	TCGA-A2-A0EU	EIF2B3	SNP	Missense_Mutation	1	45363093	G	A	40	86
BRCA	TCGA-A2-A0EU	DOCK7	SNP	Missense_Mutation	1	63084424	G	C	33	63
BRCA	TCGA-A2-A0EU	GBP4	SNP	Missense_Mutation	1	89651075	T	G	64	50
BRCA	TCGA-A2-A0EU	ADAM12	SNP	Silent	10	127708377	G	A	44	50
BRCA	TCGA-A2-A0EU	IL10RA	SNP	Missense_Mutation	11	117864082	G	A	37	78
BRCA	TCGA-A2-A0EU	FANCF	SNP	Missense_Mutation	11	22646285	C	T	25	53
BRCA	TCGA-A2-A0EU	OR4A5	SNP	Missense_Mutation	11	51412164	T	G	63	65
BRCA	TCGA-A2-A0EU	DDX11	SNP	Missense_Mutation	12	31241984	T	C	61	67
BRCA	TCGA-A2-A0EU	CNTN1	SNP	Silent	12	41352942	C	T	30	50
BRCA	TCGA-A2-A0EU	ZDHHC17	SNP	Missense_Mutation	12	77208950	G	A	47	100
BRCA	TCGA-A2-A0EU	AMDHD1	SNP	Missense_Mutation	12	96360235	G	C	41	100
BRCA	TCGA-A2-A0EU	DCT	SNP	Missense_Mutation	13	95118847	G	A	39	50
BRCA	TCGA-A2-A0EU	FOXA1	DEL	Frame_Shift_Del	14	38061410	C	-	29	51
BRCA	TCGA-A2-A0EU	STRC	SNP	Missense_Mutation	15	43893206	T	C	51	52
BRCA	TCGA-A2-A0EU	VPS13C	SNP	Missense_Mutation	15	62161736	C	T	19	60
BRCA	TCGA-A2-A0EU	ZNF592	SNP	Silent	15	85345429	G	A	35	49
BRCA	TCGA-A2-A0EU	SARM1	SNP	Missense_Mutation	17	26712072	C	A	28	82
BRCA	TCGA-A2-A0EU	SIPA1L3	SNP	Silent	19	38631959	A	G	14	27
BRCA	TCGA-A2-A0EU	PTPRH	SNP	Silent	19	55693164	G	A	40	41
BRCA	TCGA-A2-A0EU	MUC16	SNP	Silent	19	9066848	C	T	32	49
BRCA	TCGA-A2-A0EU	ZNF559	SNP	Missense_Mutation	19	9453596	A	C	9	60
BRCA	TCGA-A2-A0EU	FMNL2	SNP	Silent	2	153504368	C	T	28	71
BRCA	TCGA-A2-A0EU	CTSA	SNP	Missense_Mutation	20	44521044	A	T	4	72
BRCA	TCGA-A2-A0EU	CYP24A1	SNP	Splice_site	20	52779256	C	T	23	59
BRCA	TCGA-A2-A0EU	GRIK1	SNP	Missense_Mutation	21	31023551	G	A	37	71
BRCA	TCGA-A2-A0EU	MORC3	SNP	Missense_Mutation	21	37736548	A	C	11	75
BRCA	TCGA-A2-A0EU	ABCG1	SNP	Missense_Mutation	21	43645875	C	T	19	61
BRCA	TCGA-A2-A0EU	DCAF12L1	SNP	Missense_Mutation	23	125685532	G	A	38	73
BRCA	TCGA-A2-A0EU	IGSF1	SNP	Missense_Mutation	23	130409529	T	C	57	67
BRCA	TCGA-A2-A0EU	HEG1	SNP	Missense_Mutation	3	124746052	A	G	11	40
BRCA	TCGA-A2-A0EU	AADAC	SNP	Missense_Mutation	3	151545656	A	G	4	47
BRCA	TCGA-A2-A0EU	ADAM29	SNP	Missense_Mutation	4	175896776	G	T	44	72
BRCA	TCGA-A2-A0EU	FAM149A	SNP	Missense_Mutation	4	187074851	C	A	21	84
BRCA	TCGA-A2-A0EU	JAKMIP1	SNP	Missense_Mutation	4	6083353	G	A	38	51
BRCA	TCGA-A2-A0EU	PRKG2	SNP	Splice_site	4	82056310	A	G	5	92
BRCA	TCGA-A2-A0EU	ARHGAP24	SNP	Silent	4	86916604	C	T	19	34
BRCA	TCGA-A2-A0EU	CHSY3	SNP	Missense_Mutation	5	129243980	C	A	19	98
BRCA	TCGA-A2-A0EU	PCDHA5	SNP	Missense_Mutation	5	140201481	G	A	39	95
BRCA	TCGA-A2-A0EU	PCDHB7	SNP	Missense_Mutation	5	140554089	C	T	31	72
BRCA	TCGA-A2-A0EU	PDGFRB	SNP	Missense_Mutation	5	149510130	T	C	51	66
BRCA	TCGA-A2-A0EU	MAP3K1	INS	Frame_Shift_Ins	5	56160679	-	A	61	83
BRCA	TCGA-A2-A0EU	MAP3K1	SNP	Missense_Mutation	5	56181765	C	G	31	89
BRCA	TCGA-A2-A0EU	ALDH8A1	SNP	Silent	6	135239889	C	T	23	9
BRCA	TCGA-A2-A0EU	TNFAIP3	SNP	Silent	6	138200082	C	T	19	43
BRCA	TCGA-A2-A0EU	PKHD1	SNP	Missense_Mutation	6	51524257	C	T	27	45
BRCA	TCGA-A2-A0EU	CSMD3	SNP	Missense_Mutation	8	113564934	C	T	19	77
BRCA	TCGA-A2-A0EU	CYP11B1	SNP	Missense_Mutation	8	143956492	G	A	38	88
BRCA	TCGA-A2-A0EU	BRD3	SNP	Missense_Mutation	9	136918422	A	T	15	69
BRCA	TCGA-A2-A0EU	TUBBP5	SNP	Missense_Mutation	9	141071280	G	T	35	61
BRCA	TCGA-A2-A0EU	DMRT3	SNP	Missense_Mutation	9	990144	T	A	57	47
BRCA	TCGA-A2-A0EV	USH2A	SNP	Splice_site	1	215802376	C	T	22	95
BRCA	TCGA-A2-A0EV	CELA3B	SNP	Missense_Mutation	1	22307568	G	A	37	47
BRCA	TCGA-A2-A0EV	OR2L13	SNP	Missense_Mutation	1	248263384	C	G	26	80
BRCA	TCGA-A2-A0EV	TESK2	SNP	Missense_Mutation	1	45923438	T	C	52	86
BRCA	TCGA-A2-A0EV	KCNAB2	SNP	Silent	1	6147566	C	T	27	43
BRCA	TCGA-A2-A0EV	CACUL1	SNP	Missense_Mutation	10	120450820	C	T	32	99
BRCA	TCGA-A2-A0EV	DCLRE1C	SNP	Missense_Mutation	10	14951002	C	G	32	56
BRCA	TCGA-A2-A0EV	HSPA8	SNP	Missense_Mutation	11	122930605	A	C	4	52
BRCA	TCGA-A2-A0EV	ESAM	SNP	Missense_Mutation	11	124626494	C	T	32	59
BRCA	TCGA-A2-A0EV	HYLS1	SNP	Missense_Mutation	11	125769927	G	A	41	73
BRCA	TCGA-A2-A0EV	FLRT1	SNP	Silent	11	63884963	C	T	22	29
BRCA	TCGA-A2-A0EV	OR6A2	SNP	Missense_Mutation	11	6816119	T	C	58	61
BRCA	TCGA-A2-A0EV	RSF1	SNP	Missense_Mutation	11	77412285	T	G	56	51
BRCA	TCGA-A2-A0EV	UBE3B	SNP	Missense_Mutation	12	109959017	T	C	64	92
BRCA	TCGA-A2-A0EV	HOXC4	SNP	Silent	12	54448689	G	C	42	54
BRCA	TCGA-A2-A0EV	CLEC6A	SNP	Splice_Site	12	8618227	T	C	57	57
BRCA	TCGA-A2-A0EV	TMCC3	SNP	Missense_Mutation	12	94965266	C	G	17	97
BRCA	TCGA-A2-A0EV	SPG11	SNP	Missense_Mutation	15	44864968	G	C	34	91
BRCA	TCGA-A2-A0EV	ZNF609	SNP	Silent	15	64792134	C	T	27	50
BRCA	TCGA-A2-A0EV	CLEC16A	SNP	Missense_Mutation	16	11137916	G	A	37	93
BRCA	TCGA-A2-A0EV	AP1G1	SNP	Missense_Mutation	16	71792720	G	A	45	85
BRCA	TCGA-A2-A0EV	NCOR1	SNP	Nonsense_Mutation	17	16024444	C	A	31	100
BRCA	TCGA-A2-A0EV	UBA2	SNP	Silent	19	34960012	C	T	29	58
BRCA	TCGA-A2-A0EV	ZNF420	SNP	Nonsense_Mutation	19	37618814	T	G	51	52
BRCA	TCGA-A2-A0EV	FCGBP	SNP	Missense_Mutation	19	40368696	C	T	23	93
BRCA	TCGA-A2-A0EV	ARHGAP35	SNP	Missense_Mutation	19	47424427	G	A	39	74
BRCA	TCGA-A2-A0EV	CRX	SNP	Missense_Mutation	19	48343000	G	A	44	60
BRCA	TCGA-A2-A0EV	ZSCAN5A	SNP	Missense_Mutation	19	56734011	C	T	30	55
BRCA	TCGA-A2-A0EV	ZSCAN5A	SNP	Missense_Mutation	19	56735006	C	G	30	49
BRCA	TCGA-A2-A0EV	PCP2	SNP	Splice_Site	19	7696695	C	T	24	73
BRCA	TCGA-A2-A0EV	CLASP1	SNP	Missense_Mutation	2	122161955	G	A	45	100
BRCA	TCGA-A2-A0EV	NEB	SNP	Missense_Mutation	2	152394411	C	T	31	76
BRCA	TCGA-A2-A0EV	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	TCGA-A2-A0EV	CASP8	SNP	Missense_Mutation	2	202137448	A	C	4	38
BRCA	TCGA-A2-A0EV	FARP2	SNP	Missense_Mutation	2	242396201	G	A	39	24
BRCA	TCGA-A2-A0EV	XDH	SNP	Missense_Mutation	2	31595149	C	T	31	59
BRCA	TCGA-A2-A0EV	LRPPRC	SNP	Missense_Mutation	2	44174410	G	A	34	82
BRCA	TCGA-A2-A0EV	TGIF2	SNP	Missense_Mutation	20	35219587	C	T	22	66
BRCA	TCGA-A2-A0EV	ZMYND8	SNP	Missense_Mutation	20	45867732	G	A	43	100
BRCA	TCGA-A2-A0EV	FAM176C	SNP	Missense_Mutation	21	33873789	G	C	33	68
BRCA	TCGA-A2-A0EV	NAP1L3	SNP	Silent	23	92927934	G	A	35	46
BRCA	TCGA-A2-A0EV	C3orf52	SNP	Missense_Mutation	3	111821786	G	A	41	55
BRCA	TCGA-A2-A0EV	ZBBX	SNP	Silent	3	167034856	C	T	25	55
BRCA	TCGA-A2-A0EV	PIK3CA	INS	Splice_site	3	178928219	-	ATA	41	98
BRCA	TCGA-A2-A0EV	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A0EV	DGKG	SNP	Missense_Mutation	3	185986615	C	T	23	71
BRCA	TCGA-A2-A0EV	TRAK1	SNP	Nonsense_Mutation	3	42229603	G	T	41	99
BRCA	TCGA-A2-A0EV	CCNG2	SNP	Missense_Mutation	4	78080581	C	T	26	84
BRCA	TCGA-A2-A0EV	PCDHGA1	SNP	Missense_Mutation	5	140711927	C	T	27	81
BRCA	TCGA-A2-A0EV	PCDHGB5	SNP	Missense_Mutation	5	140778347	G	A	41	97
BRCA	TCGA-A2-A0EV	MYO10	SNP	Silent	5	16666900	C	T	21	56
BRCA	TCGA-A2-A0EV	GIMAP7	SNP	Missense_Mutation	7	150217906	A	G	9	53
BRCA	TCGA-A2-A0EV	ADCY1	SNP	Silent	7	45717647	C	T	31	28
BRCA	TCGA-A2-A0EV	HABP4	SNP	Missense_Mutation	9	99228042	G	A	41	58
BRCA	TCGA-A2-A0EW	CACNA1E	SNP	Missense_Mutation	1	181726119	C	T	23	73
BRCA	TCGA-A2-A0EW	LOC100288820	SNP	Missense_Mutation	1	233972031	G	A	47	52
BRCA	TCGA-A2-A0EW	NARS2	SNP	Missense_Mutation	11	78204212	G	C	39	93
BRCA	TCGA-A2-A0EW	CIT	SNP	Missense_Mutation	12	120156088	G	A	39	100
BRCA	TCGA-A2-A0EW	OR4N4	SNP	Silent	15	22382595	A	G	9	49
BRCA	TCGA-A2-A0EW	CDH1	SNP	Splice_Site	16	68844098	A	G	7	86
BRCA	TCGA-A2-A0EW	PIP5K1C	SNP	Missense_Mutation	19	3653547	T	C	49	71
BRCA	TCGA-A2-A0EW	ZNF45	SNP	Missense_Mutation	19	44418767	T	C	64	59
BRCA	TCGA-A2-A0EW	TTN	SNP	Missense_Mutation	2	179467306	G	T	42	51
BRCA	TCGA-A2-A0EW	CTAG2	SNP	Silent	23	153881613	G	A	38	50
BRCA	TCGA-A2-A0EW	PIK3CA	SNP	Missense_Mutation	3	178936095	A	G	7	90
BRCA	TCGA-A2-A0EW	ARHGAP18	SNP	Missense_Mutation	6	129937374	G	A	44	97
BRCA	TCGA-A2-A0EW	CTGF	SNP	Missense_Mutation	6	132270681	C	T	19	88
BRCA	TCGA-A2-A0EW	DDC	SNP	Missense_Mutation	7	50605566	C	T	20	88
BRCA	TCGA-A2-A0EW	RAD21	SNP	Missense_Mutation	8	117862955	C	G	32	92
BRCA	TCGA-A2-A0EX	KIAA2013	DEL	Frame_Shift_Del	1	11985345	T	-	56	70
BRCA	TCGA-A2-A0EX	SHE	SNP	Missense_Mutation	1	154461722	G	A	40	53
BRCA	TCGA-A2-A0EX	TRIM11	INS	Frame_Shift_Ins	1	228584379	-	AC	15	52
BRCA	TCGA-A2-A0EX	PRDM16	SNP	Missense_Mutation	1	3301795	G	A	40	81
BRCA	TCGA-A2-A0EX	HK1	SNP	Nonsense_Mutation	10	71154851	C	T	29	86
BRCA	TCGA-A2-A0EX	ESPL1	DEL	Splice_site	12	53682322	GT	-	44	49
BRCA	TCGA-A2-A0EX	GPR56	SNP	Missense_Mutation	16	57691314	C	A	17	74
BRCA	TCGA-A2-A0EX	CDH1	SNP	Nonsense_Mutation	16	68849628	C	T	21	52
BRCA	TCGA-A2-A0EX	KRTAP3-2	SNP	Missense_Mutation	17	39155871	T	A	58	63
BRCA	TCGA-A2-A0EX	FTSJ3	SNP	Missense_Mutation	17	61898202	T	C	60	54
BRCA	TCGA-A2-A0EX	FXYD5	SNP	Nonsense_Mutation	19	35649292	G	A	47	47
BRCA	TCGA-A2-A0EX	PLEKHA4	SNP	Silent	19	49363612	G	A	40	37
BRCA	TCGA-A2-A0EX	PIKFYVE	SNP	Silent	2	209212650	C	T	22	56
BRCA	TCGA-A2-A0EX	PRND	SNP	Missense_Mutation	20	4705447	C	A	25	76
BRCA	TCGA-A2-A0EX	PWP2	SNP	Missense_Mutation	21	45528869	C	T	29	80
BRCA	TCGA-A2-A0EX	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A2-A0EX	WHSC1	INS	Frame_Shift_Ins	4	1954980	-	G	59	48
BRCA	TCGA-A2-A0EX	EPB41L4A	SNP	Missense_Mutation	5	111506043	C	T	30	86
BRCA	TCGA-A2-A0EX	SNX3	SNP	Missense_Mutation	6	108581992	C	A	27	69
BRCA	TCGA-A2-A0EX	C6orf228	DEL	Frame_Shift_Del	6	11094562	G	-	39	57
BRCA	TCGA-A2-A0EX	GRM1	SNP	Missense_Mutation	6	146720226	G	A	38	100
BRCA	TCGA-A2-A0EX	RNF19A	SNP	Missense_Mutation	8	101300149	T	G	52	63
BRCA	TCGA-A2-A0EY	PTGFRN	SNP	Missense_Mutation	1	117484574	G	A	39	89
BRCA	TCGA-A2-A0EY	CHRNB2	SNP	Silent	1	154543986	C	T	29	67
BRCA	TCGA-A2-A0EY	IGSF8	SNP	Silent	1	160063723	G	C	39	18
BRCA	TCGA-A2-A0EY	SPEN	SNP	Missense_Mutation	1	16260104	G	A	45	64
BRCA	TCGA-A2-A0EY	SPEN	SNP	Missense_Mutation	1	16260233	G	C	33	73
BRCA	TCGA-A2-A0EY	SPEN	SNP	Missense_Mutation	1	16260482	G	A	33	66
BRCA	TCGA-A2-A0EY	SPEN	SNP	Silent	1	16260814	G	C	45	39
BRCA	TCGA-A2-A0EY	SPEN	SNP	Silent	1	16262320	G	A	45	50
BRCA	TCGA-A2-A0EY	ALPL	SNP	Missense_Mutation	1	21889712	G	A	40	94
BRCA	TCGA-A2-A0EY	MARK1	SNP	Missense_Mutation	1	220835278	G	C	33	100
BRCA	TCGA-A2-A0EY	CDC42BPA	SNP	Nonsense_Mutation	1	227216475	C	A	29	87
BRCA	TCGA-A2-A0EY	PCNXL2	SNP	Missense_Mutation	1	233121777	C	T	29	32
BRCA	TCGA-A2-A0EY	CEP170	SNP	Missense_Mutation	1	243349584	C	T	29	76
BRCA	TCGA-A2-A0EY	CC2D1B	SNP	Missense_Mutation	1	52825462	C	T	31	75
BRCA	TCGA-A2-A0EY	CHD5	SNP	Silent	1	6202326	G	A	38	35
BRCA	TCGA-A2-A0EY	ITGB3BP	SNP	Silent	1	63920061	G	A	47	50
BRCA	TCGA-A2-A0EY	PDCD11	SNP	Missense_Mutation	10	105160163	G	A	45	71
BRCA	TCGA-A2-A0EY	FRMD4A	SNP	Silent	10	13743360	G	A	33	80
BRCA	TCGA-A2-A0EY	DCLRE1C	SNP	Missense_Mutation	10	14950493	C	G	32	73
BRCA	TCGA-A2-A0EY	MLL	SNP	Missense_Mutation	11	118375222	C	T	29	85
BRCA	TCGA-A2-A0EY	TRAPPC4	SNP	Silent	11	118890872	C	T	31	52
BRCA	TCGA-A2-A0EY	QSER1	SNP	Missense_Mutation	11	32955397	C	G	32	69
BRCA	TCGA-A2-A0EY	QSER1	SNP	Missense_Mutation	11	32955563	C	G	32	80
BRCA	TCGA-A2-A0EY	LMO2	SNP	Missense_Mutation	11	33886164	G	A	39	56
BRCA	TCGA-A2-A0EY	OR4D11	SNP	Missense_Mutation	11	59271218	C	A	18	60
BRCA	TCGA-A2-A0EY	FERMT3	SNP	Missense_Mutation	11	63986822	G	A	38	84
BRCA	TCGA-A2-A0EY	PCF11	SNP	Missense_Mutation	11	82876651	C	T	32	68
BRCA	TCGA-A2-A0EY	ACTR6	SNP	Nonsense_Mutation	12	100604127	C	G	17	80
BRCA	TCGA-A2-A0EY	PARPBP	SNP	Missense_Mutation	12	102569397	C	G	29	65
BRCA	TCGA-A2-A0EY	WDR66	SNP	Missense_Mutation	12	122413473	C	T	32	60
BRCA	TCGA-A2-A0EY	KNTC1	SNP	Missense_Mutation	12	123089434	G	A	40	58
BRCA	TCGA-A2-A0EY	GRIN2B	SNP	Silent	12	14018978	C	T	32	64
BRCA	TCGA-A2-A0EY	SLC38A1	SNP	Nonsense_Mutation	12	46600987	C	A	29	100
BRCA	TCGA-A2-A0EY	DIP2B	SNP	Missense_Mutation	12	51127933	G	A	45	100
BRCA	TCGA-A2-A0EY	KRT76	SNP	Silent	12	53164971	A	G	7	48
BRCA	TCGA-A2-A0EY	ACSS3	SNP	Splice_Site	12	81610679	G	C	33	84
BRCA	TCGA-A2-A0EY	ACSS3	SNP	Missense_Mutation	12	81647325	G	A	33	99
BRCA	TCGA-A2-A0EY	A2M	SNP	Silent	12	9246090	C	T	32	58
BRCA	TCGA-A2-A0EY	LOC643677	SNP	Silent	13	103390519	C	T	29	50
BRCA	TCGA-A2-A0EY	LOC643677	SNP	Missense_Mutation	13	103399536	C	T	30	47
BRCA	TCGA-A2-A0EY	PARP4	SNP	Missense_Mutation	13	25021216	C	T	18	61
BRCA	TCGA-A2-A0EY	PABPC3	SNP	Nonsense_Mutation	13	25670378	C	G	19	57
BRCA	TCGA-A2-A0EY	STARD13	SNP	Missense_Mutation	13	33859651	C	G	28	82
BRCA	TCGA-A2-A0EY	RCBTB2	SNP	Missense_Mutation	13	49089446	C	T	29	86
BRCA	TCGA-A2-A0EY	TDRD3	SNP	Silent	13	61057959	G	A	38	54
BRCA	TCGA-A2-A0EY	DNAJC3	SNP	Missense_Mutation	13	96438207	G	A	45	83
BRCA	TCGA-A2-A0EY	IPO5	SNP	Missense_Mutation	13	98670799	G	A	33	100
BRCA	TCGA-A2-A0EY	CDC42BPB	SNP	Nonsense_Mutation	14	103465921	G	A	45	75
BRCA	TCGA-A2-A0EY	LTB4R2	SNP	Missense_Mutation	14	24780814	G	A	37	68
BRCA	TCGA-A2-A0EY	CLEC14A	SNP	Missense_Mutation	14	38724848	G	A	40	74
BRCA	TCGA-A2-A0EY	RBM25	SNP	Missense_Mutation	14	73576159	C	G	32	52
BRCA	TCGA-A2-A0EY	RYR3	SNP	Silent	15	34094087	G	A	34	64
BRCA	TCGA-A2-A0EY	CAPN3	SNP	Silent	15	42703522	C	T	29	63
BRCA	TCGA-A2-A0EY	PATL2	SNP	Missense_Mutation	15	44965451	G	A	37	76
BRCA	TCGA-A2-A0EY	DMXL2	SNP	Nonsense_Mutation	15	51829687	G	A	45	85
BRCA	TCGA-A2-A0EY	MYO9A	SNP	Missense_Mutation	15	72141301	T	A	62	90
BRCA	TCGA-A2-A0EY	LMAN1L	SNP	Nonsense_Mutation	15	75111590	C	G	29	61
BRCA	TCGA-A2-A0EY	POLR3K	SNP	Silent	16	103518	G	A	33	69
BRCA	TCGA-A2-A0EY	ERCC4	SNP	Silent	16	14041640	C	T	29	63
BRCA	TCGA-A2-A0EY	ENSG00000185864	SNP	Missense_Mutation	16	21858844	C	G	29	55
BRCA	TCGA-A2-A0EY	NOD2	SNP	Silent	16	50744980	C	T	29	65
BRCA	TCGA-A2-A0EY	SLC12A3	SNP	Missense_Mutation	16	56924230	G	A	39	57
BRCA	TCGA-A2-A0EY	NLRC5	SNP	Silent	16	57075469	C	T	31	45
BRCA	TCGA-A2-A0EY	CDH11	SNP	Silent	16	65016037	G	A	41	57
BRCA	TCGA-A2-A0EY	HYDIN	SNP	Silent	16	70993581	G	A	37	50
BRCA	TCGA-A2-A0EY	RFFL	SNP	Missense_Mutation	17	33344550	C	T	29	78
BRCA	TCGA-A2-A0EY	CWC25	SNP	Silent	17	36958378	C	G	23	42
BRCA	TCGA-A2-A0EY	LOC100288229	SNP	Silent	17	43625554	G	A	47	54
BRCA	TCGA-A2-A0EY	CACNA1G	SNP	Missense_Mutation	17	48693656	G	T	33	77
BRCA	TCGA-A2-A0EY	CACNA1G	SNP	Splice_site	17	48695486	G	C	47	51
BRCA	TCGA-A2-A0EY	GRIN2C	SNP	Missense_Mutation	17	72850861	C	G	30	98
BRCA	TCGA-A2-A0EY	TNK1	SNP	Silent	17	7286594	G	A	45	54
BRCA	TCGA-A2-A0EY	MFSD11	SNP	Splice_Site	17	74763467	G	A	33	92
BRCA	TCGA-A2-A0EY	TP53	SNP	Missense_Mutation	17	7577580	T	C	57	55
BRCA	TCGA-A2-A0EY	RPTOR	SNP	Silent	17	78923268	G	A	33	68
BRCA	TCGA-A2-A0EY	MALT1	SNP	Missense_Mutation	18	56412910	G	A	45	97
BRCA	TCGA-A2-A0EY	ANKRD12	SNP	Missense_Mutation	18	9256837	G	A	33	75
BRCA	TCGA-A2-A0EY	ACP5	SNP	Missense_Mutation	19	11687274	C	A	32	61
BRCA	TCGA-A2-A0EY	ZNF625	SNP	Missense_Mutation	19	12256707	C	T	19	41
BRCA	TCGA-A2-A0EY	DHPS	SNP	Missense_Mutation	19	12792473	G	C	45	67
BRCA	TCGA-A2-A0EY	ZNF626	SNP	Missense_Mutation	19	20808023	C	G	32	55
BRCA	TCGA-A2-A0EY	CLIP3	SNP	Silent	19	36517498	C	T	31	43
BRCA	TCGA-A2-A0EY	ZNF527	SNP	Missense_Mutation	19	37880726	G	T	34	61
BRCA	TCGA-A2-A0EY	HNRNPL	SNP	Missense_Mutation	19	39329054	C	T	31	77
BRCA	TCGA-A2-A0EY	LGALS14	SNP	Missense_Mutation	19	40196643	G	T	45	45
BRCA	TCGA-A2-A0EY	ATP1A3	SNP	Silent	19	42472978	G	A	33	68
BRCA	TCGA-A2-A0EY	FEM1A	SNP	Silent	19	4793216	C	T	23	30
BRCA	TCGA-A2-A0EY	ZNF473	SNP	Missense_Mutation	19	50550264	C	G	31	55
BRCA	TCGA-A2-A0EY	SHANK1	SNP	Missense_Mutation	19	51215349	G	A	41	96
BRCA	TCGA-A2-A0EY	NLRP7	SNP	Missense_Mutation	19	55451001	G	A	38	50
BRCA	TCGA-A2-A0EY	NLRP13	SNP	Silent	19	56424553	G	A	40	42
BRCA	TCGA-A2-A0EY	ZNF211	SNP	Missense_Mutation	19	58152315	A	T	7	58
BRCA	TCGA-A2-A0EY	ZNF587	SNP	Nonsense_Mutation	19	58370801	C	T	29	47
BRCA	TCGA-A2-A0EY	MRPS9	SNP	Missense_Mutation	2	105713761	G	A	37	99
BRCA	TCGA-A2-A0EY	IL36B	SNP	Silent	2	113785618	G	T	34	48
BRCA	TCGA-A2-A0EY	GPR39	SNP	Silent	2	133174867	C	T	29	51
BRCA	TCGA-A2-A0EY	NEB	SNP	Missense_Mutation	2	152467080	C	G	32	100
BRCA	TCGA-A2-A0EY	BBS5	SNP	Missense_Mutation	2	170359665	G	A	45	98
BRCA	TCGA-A2-A0EY	CHN1	SNP	Missense_Mutation	2	175742723	C	G	32	100
BRCA	TCGA-A2-A0EY	SMC6	SNP	Nonsense_Mutation	2	17897524	C	A	32	79
BRCA	TCGA-A2-A0EY	TTN	SNP	Missense_Mutation	2	179422744	C	T	21	100
BRCA	TCGA-A2-A0EY	ZDBF2	SNP	Missense_Mutation	2	207175781	C	G	29	49
BRCA	TCGA-A2-A0EY	TMEM169	SNP	Missense_Mutation	2	216964838	G	A	40	55
BRCA	TCGA-A2-A0EY	OBSL1	SNP	Silent	2	220418356	G	A	38	47
BRCA	TCGA-A2-A0EY	PPP1R7	SNP	Missense_Mutation	2	242089920	G	A	41	68
BRCA	TCGA-A2-A0EY	LTBP1	SNP	Missense_Mutation	2	33477830	C	T	29	80
BRCA	TCGA-A2-A0EY	STRN	DEL	Frame_Shift_Del	2	37076895	A	-	13	94
BRCA	TCGA-A2-A0EY	PELI1	SNP	Missense_Mutation	2	64321937	G	A	45	100
BRCA	TCGA-A2-A0EY	MTHFD2	SNP	Silent	2	74425784	C	T	32	27
BRCA	TCGA-A2-A0EY	PROM2	SNP	Silent	2	95952919	G	A	45	40
BRCA	TCGA-A2-A0EY	ZAP70	SNP	Missense_Mutation	2	98354504	G	A	39	93
BRCA	TCGA-A2-A0EY	RIN2	SNP	Missense_Mutation	20	19955639	C	G	31	78
BRCA	TCGA-A2-A0EY	PLAGL2	SNP	Missense_Mutation	20	30784659	G	C	33	66
BRCA	TCGA-A2-A0EY	SALL4	SNP	Silent	20	50405595	C	T	31	32
BRCA	TCGA-A2-A0EY	PTK6	SNP	Silent	20	62163969	G	A	35	60
BRCA	TCGA-A2-A0EY	KRTAP6-1	SNP	Missense_Mutation	21	31986193	C	T	21	65
BRCA	TCGA-A2-A0EY	UMODL1	DEL	Frame_Shift_Del	21	43496237	G	-	47	60
BRCA	TCGA-A2-A0EY	UMODL1	SNP	Missense_Mutation	21	43496238	G	C	41	61
BRCA	TCGA-A2-A0EY	DIP2A	SNP	Missense_Mutation	21	47957380	G	A	40	99
BRCA	TCGA-A2-A0EY	SGSM1	SNP	Missense_Mutation	22	25301121	C	G	32	85
BRCA	TCGA-A2-A0EY	PRR14L	DEL	Frame_Shift_Del	22	32108358	GT	-	36	64
BRCA	TCGA-A2-A0EY	BAIAP2L2	SNP	Missense_Mutation	22	38494435	C	T	30	94
BRCA	TCGA-A2-A0EY	TRMT2B	SNP	Missense_Mutation	23	100275496	C	T	32	60
BRCA	TCGA-A2-A0EY	COL4A5	SNP	Nonsense_Mutation	23	107834341	C	T	29	71
BRCA	TCGA-A2-A0EY	RGAG1	SNP	Missense_Mutation	23	109694797	G	A	45	61
BRCA	TCGA-A2-A0EY	TRPC5	SNP	Missense_Mutation	23	111155925	C	T	23	99
BRCA	TCGA-A2-A0EY	LONRF3	SNP	Missense_Mutation	23	118123503	G	C	41	71
BRCA	TCGA-A2-A0EY	OCRL	SNP	Silent	23	128674765	C	T	27	60
BRCA	TCGA-A2-A0EY	F9	SNP	Missense_Mutation	23	138630621	C	T	25	64
BRCA	TCGA-A2-A0EY	AFF2	SNP	Missense_Mutation	23	147891430	G	A	45	85
BRCA	TCGA-A2-A0EY	PDHA1	SNP	Missense_Mutation	23	19373834	G	A	33	96
BRCA	TCGA-A2-A0EY	MBTPS2	SNP	Silent	23	21857900	C	T	31	48
BRCA	TCGA-A2-A0EY	DCAF8L1	SNP	Missense_Mutation	23	27998944	C	A	25	37
BRCA	TCGA-A2-A0EY	TMEM47	SNP	Splice_Site	23	34657505	C	T	32	80
BRCA	TCGA-A2-A0EY	EFHC2	SNP	Missense_Mutation	23	44109464	G	T	41	52
BRCA	TCGA-A2-A0EY	MAGIX	SNP	Missense_Mutation	23	49021148	C	T	31	48
BRCA	TCGA-A2-A0EY	IQSEC2	SNP	Silent	23	53276155	C	T	29	52
BRCA	TCGA-A2-A0EY	PDZD11	SNP	Silent	23	69509159	C	T	23	37
BRCA	TCGA-A2-A0EY	KIF4A	SNP	Silent	23	69615655	G	A	33	50
BRCA	TCGA-A2-A0EY	ERCC6L	SNP	Missense_Mutation	23	71425689	C	G	32	48
BRCA	TCGA-A2-A0EY	MYLK	SNP	Missense_Mutation	3	123456342	T	G	62	59
BRCA	TCGA-A2-A0EY	CCDC14	DEL	Frame_Shift_Del	3	123675589	T	-	56	63
BRCA	TCGA-A2-A0EY	ROPN1	SNP	Missense_Mutation	3	123694230	C	T	30	77
BRCA	TCGA-A2-A0EY	PPP2R3A	SNP	Missense_Mutation	3	135722043	C	T	29	69
BRCA	TCGA-A2-A0EY	ZIC1	SNP	Missense_Mutation	3	147128456	C	T	31	78
BRCA	TCGA-A2-A0EY	GYG1	SNP	Missense_Mutation	3	148727120	G	T	33	55
BRCA	TCGA-A2-A0EY	SI	SNP	Missense_Mutation	3	164712085	G	T	45	100
BRCA	TCGA-A2-A0EY	PIK3CA	SNP	Splice_site	3	178917478	G	A	44	99
BRCA	TCGA-A2-A0EY	ABCF3	SNP	Silent	3	183911228	C	T	29	63
BRCA	TCGA-A2-A0EY	NDNF	SNP	Missense_Mutation	4	121958518	G	C	33	88
BRCA	TCGA-A2-A0EY	ASB5	SNP	Silent	4	177146416	T	A	59	55
BRCA	TCGA-A2-A0EY	HTT	SNP	Silent	4	3162104	G	T	46	52
BRCA	TCGA-A2-A0EY	N4BP2	SNP	Silent	4	40127807	C	G	29	71
BRCA	TCGA-A2-A0EY	FAM13A	SNP	Missense_Mutation	4	89726164	C	G	29	54
BRCA	TCGA-A2-A0EY	SNX24	SNP	Silent	5	122337115	A	G	7	53
BRCA	TCGA-A2-A0EY	FBN2	SNP	Missense_Mutation	5	127697490	C	T	31	100
BRCA	TCGA-A2-A0EY	FBXW11	SNP	Silent	5	171295750	G	A	45	56
BRCA	TCGA-A2-A0EY	PDCD6	SNP	Missense_Mutation	5	272878	C	G	32	50
BRCA	TCGA-A2-A0EY	DDX4	SNP	Missense_Mutation	5	55056082	C	T	32	75
BRCA	TCGA-A2-A0EY	GCM2	SNP	Missense_Mutation	6	10874552	C	A	29	62
BRCA	TCGA-A2-A0EY	FAM54A	SNP	Silent	6	136560810	G	C	41	35
BRCA	TCGA-A2-A0EY	KATNA1	SNP	Missense_Mutation	6	149959615	G	C	36	65
BRCA	TCGA-A2-A0EY	AKAP12	SNP	Missense_Mutation	6	151670325	G	C	33	77
BRCA	TCGA-A2-A0EY	SYNE1	SNP	Silent	6	152623079	C	T	24	55
BRCA	TCGA-A2-A0EY	HIST1H2BF	SNP	Missense_Mutation	6	26200015	G	A	37	91
BRCA	TCGA-A2-A0EY	HIST1H1B	SNP	Missense_Mutation	6	27834879	C	G	32	65
BRCA	TCGA-A2-A0EY	HIST1H2BO	SNP	Silent	6	27861510	C	T	29	78
BRCA	TCGA-A2-A0EY	TRERF1	SNP	Silent	6	42200628	C	T	17	61
BRCA	TCGA-A2-A0EY	MUC17	SNP	Nonsense_Mutation	7	100684341	C	G	29	55
BRCA	TCGA-A2-A0EY	NRCAM	SNP	Splice_site	7	107823364	G	T	42	71
BRCA	TCGA-A2-A0EY	CALD1	SNP	Missense_Mutation	7	134552540	G	A	37	84
BRCA	TCGA-A2-A0EY	CALD1	SNP	Missense_Mutation	7	134620445	G	C	33	83
BRCA	TCGA-A2-A0EY	SLC13A4	SNP	Missense_Mutation	7	135366339	C	G	24	49
BRCA	TCGA-A2-A0EY	ZNF467	SNP	Missense_Mutation	7	149461892	C	T	31	70
BRCA	TCGA-A2-A0EY	IL6	SNP	Nonsense_Mutation	7	22769293	C	A	29	48
BRCA	TCGA-A2-A0EY	ACTB	SNP	Missense_Mutation	7	5567953	C	T	23	77
BRCA	TCGA-A2-A0EY	ZNF92	SNP	Silent	7	64853754	C	T	28	61
BRCA	TCGA-A2-A0EY	CROT	SNP	Missense_Mutation	7	87020973	C	T	29	98
BRCA	TCGA-A2-A0EY	SUN1	SNP	Missense_Mutation	7	882998	C	G	29	82
BRCA	TCGA-A2-A0EY	CYP3A7	SNP	Missense_Mutation	7	99317955	G	A	33	62
BRCA	TCGA-A2-A0EY	TRPS1	SNP	Missense_Mutation	8	116427084	C	T	31	79
BRCA	TCGA-A2-A0EY	ELP3	SNP	Silent	8	27989918	C	T	29	49
BRCA	TCGA-A2-A0EY	GTF2E2	SNP	Splice_Site	8	30472233	C	T	32	96
BRCA	TCGA-A2-A0EY	WRN	SNP	Missense_Mutation	8	30954325	C	T	29	62
BRCA	TCGA-A2-A0EY	ASH2L	SNP	Missense_Mutation	8	37996551	G	A	33	100
BRCA	TCGA-A2-A0EY	PRKDC	SNP	Silent	8	48839893	C	T	29	57
BRCA	TCGA-A2-A0EY	ZFHX4	SNP	Silent	8	77765466	C	T	19	52
BRCA	TCGA-A2-A0EY	PAG1	SNP	Missense_Mutation	8	81888988	C	T	32	87
BRCA	TCGA-A2-A0EY	DPY19L4	SNP	Silent	8	95782692	G	A	45	58
BRCA	TCGA-A2-A0EY	KCNS2	SNP	Silent	8	99440888	C	T	31	56
BRCA	TCGA-A2-A0EY	SMC2	SNP	Silent	9	106862469	G	A	45	56
BRCA	TCGA-A2-A0EY	FBXW2	SNP	Missense_Mutation	9	123533674	G	A	45	98
BRCA	TCGA-A2-A0EY	C5	SNP	Missense_Mutation	9	123737059	C	G	32	72
BRCA	TCGA-A2-A0EY	DENND1A	SNP	Splice_site	9	126520100	G	A	35	82
BRCA	TCGA-A2-A0EY	GOLGA1	SNP	Silent	9	127674285	C	T	32	51
BRCA	TCGA-A2-A0EY	C9orf117	SNP	Missense_Mutation	9	130474484	G	C	33	53
BRCA	TCGA-A2-A0EY	LAMC3	SNP	Silent	9	133907491	C	T	19	47
BRCA	TCGA-A2-A0EY	SETX	SNP	Missense_Mutation	9	135173682	C	T	29	66
BRCA	TCGA-A2-A0EY	SETX	SNP	Missense_Mutation	9	135203024	C	T	29	63
BRCA	TCGA-A2-A0EY	LINGO2	SNP	Silent	9	27950415	C	T	32	59
BRCA	TCGA-A2-A0EY	C9orf131	SNP	Missense_Mutation	9	35043674	C	A	32	54
BRCA	TCGA-A2-A0EY	CD72	SNP	Silent	9	35618081	C	T	32	59
BRCA	TCGA-A2-A0EY	CD72	SNP	Silent	9	35618271	C	T	29	59
BRCA	TCGA-A2-A0EY	KIAA1432	SNP	Missense_Mutation	9	5765456	C	G	32	86
BRCA	TCGA-A2-A0EY	DAPK1	SNP	Silent	9	90219926	C	T	23	39
BRCA	TCGA-A2-A0EY	IARS	SNP	Missense_Mutation	9	95043061	C	T	17	93
BRCA	TCGA-A2-A0ST	PEX11B	SNP	Missense_Mutation	1	145522575	A	G	12	85
BRCA	TCGA-A2-A0ST	EFHD2	DEL	Frame_Shift_Del	1	15736758	G	-	47	84
BRCA	TCGA-A2-A0ST	ARHGAP21	SNP	Missense_Mutation	10	24923969	C	A	30	94
BRCA	TCGA-A2-A0ST	PPP2R1B	SNP	Silent	11	111637041	A	C	6	28
BRCA	TCGA-A2-A0ST	OR11H12	SNP	Missense_Mutation	14	19377881	G	A	48	59
BRCA	TCGA-A2-A0ST	ABCC11	SNP	Splice_Site	16	48204014	A	C	6	84
BRCA	TCGA-A2-A0ST	NOL3	SNP	Missense_Mutation	16	67208570	G	C	38	50
BRCA	TCGA-A2-A0ST	RNASEH2A	SNP	Silent	19	12917877	G	A	35	56
BRCA	TCGA-A2-A0ST	CCDC142	SNP	Nonsense_Mutation	2	74709369	G	T	37	53
BRCA	TCGA-A2-A0ST	RBMXL3	SNP	Silent	23	114425975	T	C	55	50
BRCA	TCGA-A2-A0ST	EAF1	SNP	Silent	3	15469355	G	A	33	61
BRCA	TCGA-A2-A0ST	FANCE	SNP	Missense_Mutation	6	35423973	G	A	33	50
BRCA	TCGA-A2-A0SU	FNDC7	SNP	Silent	1	109268547	C	T	28	53
BRCA	TCGA-A2-A0SU	GATA3	INS	Frame_Shift_Ins	10	8115874	-	G	31	85
BRCA	TCGA-A2-A0SU	UBC	SNP	Missense_Mutation	12	125397063	C	A	29	90
BRCA	TCGA-A2-A0SU	SMARCC2	SNP	Missense_Mutation	12	56558254	T	G	60	59
BRCA	TCGA-A2-A0SU	BRCA2	SNP	Nonsense_Mutation	13	32972574	C	G	19	47
BRCA	TCGA-A2-A0SU	CACNA1H	SNP	Missense_Mutation	16	1260048	G	A	38	88
BRCA	TCGA-A2-A0SU	ADAMTS18	SNP	Silent	16	77326976	G	A	38	50
BRCA	TCGA-A2-A0SU	KSR1	SNP	Missense_Mutation	17	25910101	G	A	43	96
BRCA	TCGA-A2-A0SU	ACACA	SNP	Missense_Mutation	17	35468534	C	T	27	100
BRCA	TCGA-A2-A0SU	PNMT	SNP	Silent	17	37825994	C	G	29	53
BRCA	TCGA-A2-A0SU	ACLY	SNP	Missense_Mutation	17	40025782	G	A	35	100
BRCA	TCGA-A2-A0SU	AZI1	SNP	Nonsense_Mutation	17	79173241	G	A	45	54
BRCA	TCGA-A2-A0SU	SLC38A10	DEL	In_Frame_Del	17	79258654	TCTCCACCAGCA	-	58	64
BRCA	TCGA-A2-A0SU	ACTG1	DEL	Frame_Shift_Del	17	79477829	CC	-	18	81
BRCA	TCGA-A2-A0SU	ALOXE3	SNP	Splice_Site	17	8020092	A	C	6	77
BRCA	TCGA-A2-A0SU	MOCOS	SNP	Missense_Mutation	18	33793393	C	T	26	93
BRCA	TCGA-A2-A0SU	DLGAP1	SNP	Missense_Mutation	18	3879654	G	T	39	100
BRCA	TCGA-A2-A0SU	CACNA1A	SNP	Missense_Mutation	19	13341008	C	T	17	94
BRCA	TCGA-A2-A0SU	C19orf53	SNP	Missense_Mutation	19	13888918	C	G	26	84
BRCA	TCGA-A2-A0SU	NCAN	SNP	Silent	19	19338574	G	A	35	48
BRCA	TCGA-A2-A0SU	HAUS5	SNP	Missense_Mutation	19	36109580	G	A	38	52
BRCA	TCGA-A2-A0SU	REG3A	SNP	Missense_Mutation	2	79384752	T	A	64	38
BRCA	TCGA-A2-A0SU	CELSR1	SNP	Silent	22	46931940	G	T	38	49
BRCA	TCGA-A2-A0SU	IFT122	DEL	Frame_Shift_Del	3	129207141	G	-	35	50
BRCA	TCGA-A2-A0SU	MUC4	SNP	Missense_Mutation	3	195506501	G	A	43	49
BRCA	TCGA-A2-A0SU	RGS12	SNP	Missense_Mutation	4	3318650	C	A	28	45
BRCA	TCGA-A2-A0SU	MOXD1	SNP	Silent	6	132643998	G	A	39	50
BRCA	TCGA-A2-A0SU	KIAA1244	SNP	Silent	6	138599688	C	T	30	47
BRCA	TCGA-A2-A0SU	GCC1	SNP	Missense_Mutation	7	127222606	G	A	44	68
BRCA	TCGA-A2-A0SU	TMEM213	DEL	Frame_Shift_Del	7	138482852	GCAGCGCCTCCCC	-	46	53
BRCA	TCGA-A2-A0SU	KIAA1147	DEL	In_Frame_Del	7	141365068	TGCCCCCGA	-	59	61
BRCA	TCGA-A2-A0SU	TAS2R5	SNP	Missense_Mutation	7	141490297	C	G	24	50
BRCA	TCGA-A2-A0SU	GIMAP7	DEL	Frame_Shift_Del	7	150217162	T	-	56	82
BRCA	TCGA-A2-A0SU	TRAPPC9	SNP	Missense_Mutation	8	141294029	A	C	9	48
BRCA	TCGA-A2-A0SV	FNDC7	SNP	Missense_Mutation	1	109271347	C	T	19	62
BRCA	TCGA-A2-A0SV	BRDT	SNP	Missense_Mutation	1	92445220	G	A	44	53
BRCA	TCGA-A2-A0SV	ITGA8	SNP	Silent	10	15628600	C	T	27	44
BRCA	TCGA-A2-A0SV	OGDHL	SNP	Silent	10	50966465	G	A	35	51
BRCA	TCGA-A2-A0SV	PTEN	DEL	In_Frame_Del	10	89685293	ACCATT	-	2	89
BRCA	TCGA-A2-A0SV	DYNC2H1	SNP	Splice_site	11	103055626	A	G	4	72
BRCA	TCGA-A2-A0SV	OR51A2	SNP	Silent	11	4976683	G	A	41	46
BRCA	TCGA-A2-A0SV	OR52E4	SNP	Silent	11	5905807	C	T	28	40
BRCA	TCGA-A2-A0SV	FAT3	SNP	Missense_Mutation	11	92543074	G	A	42	99
BRCA	TCGA-A2-A0SV	CIT	SNP	Missense_Mutation	12	120146063	G	A	41	100
BRCA	TCGA-A2-A0SV	PPM1H	SNP	Missense_Mutation	12	63042385	G	A	38	81
BRCA	TCGA-A2-A0SV	DYRK2	SNP	Missense_Mutation	12	68051820	G	T	40	100
BRCA	TCGA-A2-A0SV	VKORC1	SNP	Missense_Mutation	16	31104727	G	A	37	46
BRCA	TCGA-A2-A0SV	SLC6A4	SNP	Missense_Mutation	17	28545941	G	A	35	86
BRCA	TCGA-A2-A0SV	ACLY	SNP	Missense_Mutation	17	40030163	C	T	31	100
BRCA	TCGA-A2-A0SV	AOC3	SNP	Silent	17	41008381	C	T	28	64
BRCA	TCGA-A2-A0SV	ITGA2B	SNP	Splice_site	17	42454377	C	T	24	78
BRCA	TCGA-A2-A0SV	TP53	DEL	In_Frame_Del	17	7579343	TGCAAGAAG	-	51	72
BRCA	TCGA-A2-A0SV	CEP76	SNP	Missense_Mutation	18	12697393	T	C	52	77
BRCA	TCGA-A2-A0SV	C19orf44	SNP	Missense_Mutation	19	16611796	A	C	9	52
BRCA	TCGA-A2-A0SV	SIN3B	SNP	Silent	19	16962240	G	A	40	21
BRCA	TCGA-A2-A0SV	PREX1	SNP	Missense_Mutation	20	47342884	C	A	21	69
BRCA	TCGA-A2-A0SV	ATP9A	SNP	Missense_Mutation	20	50235558	G	A	35	65
BRCA	TCGA-A2-A0SV	MOV10L1	SNP	Missense_Mutation	22	50553671	G	A	39	80
BRCA	TCGA-A2-A0SV	EFNB1	SNP	Silent	23	68060260	G	A	42	49
BRCA	TCGA-A2-A0SV	EPHB3	SNP	Silent	3	184299398	T	C	55	31
BRCA	TCGA-A2-A0SV	SORBS2	SNP	Missense_Mutation	4	186544158	A	T	7	54
BRCA	TCGA-A2-A0SV	PCDHGB2	SNP	Silent	5	140740551	T	C	51	51
BRCA	TCGA-A2-A0SV	FAT2	SNP	Missense_Mutation	5	150925419	T	C	49	49
BRCA	TCGA-A2-A0SV	PHACTR1	DEL	In_Frame_Del	6	13230284	AGG	-	3	91
BRCA	TCGA-A2-A0SV	CFTR	DEL	In_Frame_Del	7	117305522	AATAATTAG	-	1	51
BRCA	TCGA-A2-A0SV	MLL3	SNP	Missense_Mutation	7	151896496	T	C	50	56
BRCA	TCGA-A2-A0SV	HDAC9	SNP	Missense_Mutation	7	18801793	G	T	37	93
BRCA	TCGA-A2-A0SV	CSMD1	SNP	Splice_Site	8	3216673	C	T	18	100
BRCA	TCGA-A2-A0SV	AMBP	SNP	Silent	9	116823771	G	A	38	47
BRCA	TCGA-A2-A0SV	MORN5	SNP	Silent	9	124936830	C	T	19	48
BRCA	TCGA-A2-A0SV	DMRTA1	SNP	Silent	9	22451646	T	A	56	62
BRCA	TCGA-A2-A0SW	TCHH	SNP	Missense_Mutation	1	152085491	G	A	38	50
BRCA	TCGA-A2-A0SW	RNF2	SNP	Silent	1	185060756	C	T	32	68
BRCA	TCGA-A2-A0SW	USH2A	SNP	Missense_Mutation	1	215848109	G	T	46	64
BRCA	TCGA-A2-A0SW	SRSF11	SNP	Missense_Mutation	1	70716474	G	A	41	98
BRCA	TCGA-A2-A0SW	LRRC8B	SNP	Missense_Mutation	1	90049138	A	C	9	69
BRCA	TCGA-A2-A0SW	SVIL	SNP	Splice_Site	10	29760173	C	T	24	100
BRCA	TCGA-A2-A0SW	DDX50	SNP	Missense_Mutation	10	70666581	G	A	33	64
BRCA	TCGA-A2-A0SW	PDE6C	SNP	Missense_Mutation	10	95421855	G	A	33	94
BRCA	TCGA-A2-A0SW	C11orf9	SNP	Silent	11	61547364	G	A	35	58
BRCA	TCGA-A2-A0SW	GCN1L1	SNP	Silent	12	120599749	C	T	27	18
BRCA	TCGA-A2-A0SW	METTL7B	SNP	Splice_site	12	56076035	C	A	23	90
BRCA	TCGA-A2-A0SW	USP15	SNP	Missense_Mutation	12	62786838	G	A	48	100
BRCA	TCGA-A2-A0SW	XPOT	SNP	Silent	12	64808758	G	A	33	60
BRCA	TCGA-A2-A0SW	CNOT2	SNP	Missense_Mutation	12	70724100	G	T	45	100
BRCA	TCGA-A2-A0SW	PTPRB	SNP	Missense_Mutation	12	70932782	C	T	19	78
BRCA	TCGA-A2-A0SW	SUCLA2	SNP	Missense_Mutation	13	48528339	A	C	2	88
BRCA	TCGA-A2-A0SW	NID2	SNP	Missense_Mutation	14	52481149	C	G	21	20
BRCA	TCGA-A2-A0SW	PPP4R4	SNP	Missense_Mutation	14	94741774	T	C	61	69
BRCA	TCGA-A2-A0SW	SERPINA4	DEL	Frame_Shift_Del	14	95029874	C	-	29	67
BRCA	TCGA-A2-A0SW	MCTP2	DEL	Frame_Shift_Del	15	95022241	G	-	39	68
BRCA	TCGA-A2-A0SW	FAM20A	SNP	Missense_Mutation	17	66538936	C	T	31	100
BRCA	TCGA-A2-A0SW	ABCA10	SNP	Missense_Mutation	17	67148549	C	T	29	68
BRCA	TCGA-A2-A0SW	TP53	SNP	Missense_Mutation	17	7577121	G	A	38	65
BRCA	TCGA-A2-A0SW	SERPINB12	SNP	Missense_Mutation	18	61225627	C	G	18	50
BRCA	TCGA-A2-A0SW	RTBDN	SNP	Silent	19	12945620	T	C	55	50
BRCA	TCGA-A2-A0SW	RPL18A	SNP	Missense_Mutation	19	17974037	C	T	19	80
BRCA	TCGA-A2-A0SW	XRCC1	SNP	Missense_Mutation	19	44079136	G	A	33	69
BRCA	TCGA-A2-A0SW	ZNF160	SNP	Missense_Mutation	19	53571424	C	T	19	61
BRCA	TCGA-A2-A0SW	MERTK	DEL	Frame_Shift_Del	2	112767613	ACTTTATTCCCGATTGGAG	-	14	47
BRCA	TCGA-A2-A0SW	ZC3H6	INS	Frame_Shift_Ins	2	113088668	-	A	33	84
BRCA	TCGA-A2-A0SW	NCKAP5	SNP	Missense_Mutation	2	133887613	T	C	54	83
BRCA	TCGA-A2-A0SW	TTN	SNP	Missense_Mutation	2	179614907	T	C	54	52
BRCA	TCGA-A2-A0SW	GPR55	SNP	Missense_Mutation	2	231775323	G	A	39	53
BRCA	TCGA-A2-A0SW	CHRND	SNP	Missense_Mutation	2	233399897	G	T	44	62
BRCA	TCGA-A2-A0SW	MYEOV2	INS	Frame_Shift_Ins	2	241066091	-	A	49	35
BRCA	TCGA-A2-A0SW	KANSL3	DEL	In_Frame_Del	2	97267981	GTG	-	36	81
BRCA	TCGA-A2-A0SW	L3MBTL	SNP	Missense_Mutation	20	42143341	C	T	27	60
BRCA	TCGA-A2-A0SW		SNP	Missense_Mutation	20	56063465	C	G	32	62
BRCA	TCGA-A2-A0SW	PAK7	SNP	Missense_Mutation	20	9546839	T	G	51	64
BRCA	TCGA-A2-A0SW	SULT4A1	SNP	Silent	22	44237700	C	T	23	7
BRCA	TCGA-A2-A0SW	CSTF2	SNP	Splice_Site	23	100087722	G	T	33	75
BRCA	TCGA-A2-A0SW	ZNF280C	SNP	Missense_Mutation	23	129354447	C	G	30	82
BRCA	TCGA-A2-A0SW	FIGF	SNP	Missense_Mutation	23	15364358	T	C	51	59
BRCA	TCGA-A2-A0SW	MUC4	SNP	Missense_Mutation	3	195509676	C	G	24	51
BRCA	TCGA-A2-A0SW	MUC4	SNP	Missense_Mutation	3	195511180	G	A	45	55
BRCA	TCGA-A2-A0SW	MUC4	SNP	Missense_Mutation	3	195514948	G	A	35	73
BRCA	TCGA-A2-A0SW	LRBA	SNP	Missense_Mutation	4	151829547	G	C	41	100
BRCA	TCGA-A2-A0SW	FGA	SNP	Missense_Mutation	4	155506918	T	C	59	40
BRCA	TCGA-A2-A0SW	HTT	SNP	Silent	4	3123086	C	T	25	57
BRCA	TCGA-A2-A0SW	HTRA3	SNP	Silent	4	8294069	C	T	20	77
BRCA	TCGA-A2-A0SW	GPRIN3	SNP	Missense_Mutation	4	90169167	A	T	12	89
BRCA	TCGA-A2-A0SW	STARD4	SNP	Missense_Mutation	5	110835655	G	C	45	90
BRCA	TCGA-A2-A0SW	MARCH3	SNP	Silent	5	126250790	G	A	40	50
BRCA	TCGA-A2-A0SW	PCDHB7	SNP	Missense_Mutation	5	140554481	G	T	44	55
BRCA	TCGA-A2-A0SW	GNB2L1	SNP	Missense_Mutation	5	180669195	A	C	7	89
BRCA	TCGA-A2-A0SW	CDH6	SNP	Missense_Mutation	5	31317975	C	T	19	76
BRCA	TCGA-A2-A0SW	PIK3R1	INS	In_Frame_Ins	5	67589630	-	GATTATATGAAG	15	68
BRCA	TCGA-A2-A0SW	CPED1	SNP	Missense_Mutation	7	120782056	T	G	51	62
BRCA	TCGA-A2-A0SW	VWDE	SNP	Silent	7	12401070	A	G	10	51
BRCA	TCGA-A2-A0SW	CPA5	SNP	Silent	7	130007391	C	T	23	49
BRCA	TCGA-A2-A0SW	PLXNA4	SNP	Splice_site	7	131895703	G	A	33	100
BRCA	TCGA-A2-A0SW	HOXA3	SNP	Missense_Mutation	7	27148007	C	T	19	97
BRCA	TCGA-A2-A0SW	SLC29A4	SNP	Missense_Mutation	7	5339011	C	T	26	93
BRCA	TCGA-A2-A0SW	ZNF107	SNP	Missense_Mutation	7	64168226	A	G	3	49
BRCA	TCGA-A2-A0SW	GTF2IRD2B	SNP	Silent	7	74538956	A	G	7	39
BRCA	TCGA-A2-A0SW	ABCB1	SNP	Silent	7	87175254	T	C	54	49
BRCA	TCGA-A2-A0SW	COL14A1	SNP	Missense_Mutation	8	121357751	A	G	6	50
BRCA	TCGA-A2-A0SW	ZNF251	SNP	Missense_Mutation	8	145948252	A	G	4	60
BRCA	TCGA-A2-A0SW	EFHA2	SNP	Silent	8	16942807	G	A	41	97
BRCA	TCGA-A2-A0SW	HR	SNP	Missense_Mutation	8	21978705	C	T	19	64
BRCA	TCGA-A2-A0SW	CSMD1	SNP	Silent	8	2832073	G	A	37	41
BRCA	TCGA-A2-A0SW	DKK4	SNP	Splice_site	8	42232280	C	T	24	53
BRCA	TCGA-A2-A0SX	IVL	SNP	Silent	1	152882981	A	T	6	45
BRCA	TCGA-A2-A0SX	ARHGEF2	SNP	Missense_Mutation	1	155921009	C	T	29	67
BRCA	TCGA-A2-A0SX	SMYD2	SNP	Silent	1	214491454	A	G	4	51
BRCA	TCGA-A2-A0SX	MTR	SNP	Missense_Mutation	1	237015858	C	T	30	100
BRCA	TCGA-A2-A0SX	MTR	SNP	Missense_Mutation	1	237023136	C	A	29	56
BRCA	TCGA-A2-A0SX	SYCE1	SNP	Splice_site	10	135370263	G	A	40	28
BRCA	TCGA-A2-A0SX	LGR4	SNP	Silent	11	27393924	A	C	3	54
BRCA	TCGA-A2-A0SX	ANKRD11	SNP	Missense_Mutation	16	89349106	C	T	29	100
BRCA	TCGA-A2-A0SX	MYH13	SNP	Missense_Mutation	17	10248682	C	T	28	66
BRCA	TCGA-A2-A0SX	CACNB1	SNP	Missense_Mutation	17	37347809	G	T	33	97
BRCA	TCGA-A2-A0SX	TP53	SNP	Missense_Mutation	17	7578253	C	A	30	96
BRCA	TCGA-A2-A0SX	CHST9	SNP	Missense_Mutation	18	24497058	T	G	52	52
BRCA	TCGA-A2-A0SX	NOTCH3	SNP	Missense_Mutation	19	15281551	C	T	27	88
BRCA	TCGA-A2-A0SX	KIR2DL1	SNP	Missense_Mutation	19	55284926	G	A	38	50
BRCA	TCGA-A2-A0SX	FARP2	SNP	Splice_Site	2	242312707	T	A	57	81
BRCA	TCGA-A2-A0SX	SOS1	SNP	Missense_Mutation	2	39281877	T	C	60	89
BRCA	TCGA-A2-A0SX	RHOQ	SNP	Silent	2	46803351	A	G	4	58
BRCA	TCGA-A2-A0SX	CTNNA2	SNP	Silent	2	80136851	C	T	27	40
BRCA	TCGA-A2-A0SX	ATP9A	SNP	Missense_Mutation	20	50273503	C	T	19	84
BRCA	TCGA-A2-A0SX	KCNJ6	SNP	Missense_Mutation	21	39087178	C	A	29	50
BRCA	TCGA-A2-A0SX	STAG2	SNP	Nonsense_Mutation	23	123195704	G	T	43	97
BRCA	TCGA-A2-A0SX	PPEF1	SNP	Nonsense_Mutation	23	18800500	G	T	33	92
BRCA	TCGA-A2-A0SX	BMP15	SNP	Silent	23	50659301	T	C	60	52
BRCA	TCGA-A2-A0SX	ADPRH	SNP	Missense_Mutation	3	119306694	G	A	43	48
BRCA	TCGA-A2-A0SX	DROSHA	SNP	Missense_Mutation	5	31526807	A	C	1	70
BRCA	TCGA-A2-A0SX	HIST1H3B	SNP	Missense_Mutation	6	26031937	C	T	20	98
BRCA	TCGA-A2-A0SX	C6orf150	SNP	Missense_Mutation	6	74161777	G	T	42	54
BRCA	TCGA-A2-A0SX	MICALL2	SNP	Missense_Mutation	7	1477788	G	T	40	46
BRCA	TCGA-A2-A0SX	KIAA2026	SNP	Missense_Mutation	9	5921255	G	T	45	71
BRCA	TCGA-A2-A0SY	NBPF10	SNP	Missense_Mutation	1	145299900	C	G	29	45
BRCA	TCGA-A2-A0SY	ITGA10	SNP	Silent	1	145538042	C	A	32	61
BRCA	TCGA-A2-A0SY	PRRC2C	SNP	Nonsense_Mutation	1	171535915	C	G	29	82
BRCA	TCGA-A2-A0SY	NCF2	SNP	Missense_Mutation	1	183542412	C	T	29	71
BRCA	TCGA-A2-A0SY	ASPM	SNP	Missense_Mutation	1	197071830	C	T	23	52
BRCA	TCGA-A2-A0SY	TRAF3IP3	SNP	Missense_Mutation	1	209933475	G	A	45	66
BRCA	TCGA-A2-A0SY	BROX	SNP	Silent	1	222892339	G	A	33	55
BRCA	TCGA-A2-A0SY	ACTN2	SNP	Silent	1	236924389	C	T	29	80
BRCA	TCGA-A2-A0SY	MTR	SNP	Silent	1	236988693	C	T	18	50
BRCA	TCGA-A2-A0SY	OR2B11	SNP	Missense_Mutation	1	247614687	C	T	29	62
BRCA	TCGA-A2-A0SY	OR14I1	SNP	Nonsense_Mutation	1	248845388	G	C	45	61
BRCA	TCGA-A2-A0SY	MEGF6	SNP	Missense_Mutation	1	3519148	C	G	29	68
BRCA	TCGA-A2-A0SY	PLK3	SNP	Silent	1	45271021	C	T	30	16
BRCA	TCGA-A2-A0SY	PLK3	SNP	Silent	1	45271308	C	G	30	40
BRCA	TCGA-A2-A0SY	ABCA4	SNP	Missense_Mutation	1	94510272	T	A	60	93
BRCA	TCGA-A2-A0SY	HPS1	SNP	Missense_Mutation	10	100191027	G	A	43	82
BRCA	TCGA-A2-A0SY	SLK	SNP	Missense_Mutation	10	105779531	G	A	45	96
BRCA	TCGA-A2-A0SY	SLK	SNP	Missense_Mutation	10	105779657	C	G	29	85
BRCA	TCGA-A2-A0SY	LRRC27	SNP	Missense_Mutation	10	134165200	G	A	37	62
BRCA	TCGA-A2-A0SY	FAM188A	SNP	Nonsense_Mutation	10	15858876	C	T	30	97
BRCA	TCGA-A2-A0SY	NRP1	SNP	Missense_Mutation	10	33502481	C	T	29	78
BRCA	TCGA-A2-A0SY	C10orf12	SNP	Silent	10	98742128	A	C	7	37
BRCA	TCGA-A2-A0SY	ACCSL	SNP	Silent	11	44069730	G	A	37	51
BRCA	TCGA-A2-A0SY	MS4A13	SNP	Silent	11	60292781	C	T	17	45
BRCA	TCGA-A2-A0SY	SMPD1	SNP	Silent	11	6412017	T	G	54	49
BRCA	TCGA-A2-A0SY	RNF121	SNP	Missense_Mutation	11	71706538	G	C	33	97
BRCA	TCGA-A2-A0SY	DNAJB13	SNP	Silent	11	73676008	C	G	31	45
BRCA	TCGA-A2-A0SY	NOX4	SNP	Nonsense_Mutation	11	89135609	G	C	45	62
BRCA	TCGA-A2-A0SY	TCP11L2	SNP	Missense_Mutation	12	106734763	C	G	32	61
BRCA	TCGA-A2-A0SY	TPCN1	SNP	Missense_Mutation	12	113731077	C	T	17	51
BRCA	TCGA-A2-A0SY	ATP6V0A2	SNP	Missense_Mutation	12	124218479	G	C	36	57
BRCA	TCGA-A2-A0SY	CACNA1C	SNP	Missense_Mutation	12	2622018	G	C	33	98
BRCA	TCGA-A2-A0SY	FAM60A	SNP	Missense_Mutation	12	31451107	C	T	31	99
BRCA	TCGA-A2-A0SY	KIF5A	SNP	Splice_site	12	57969055	G	A	35	96
BRCA	TCGA-A2-A0SY	ATP2B1	SNP	Missense_Mutation	12	90028579	C	T	32	100
BRCA	TCGA-A2-A0SY	LRCH1	SNP	Missense_Mutation	13	47286664	G	C	33	58
BRCA	TCGA-A2-A0SY	TGDS	SNP	Missense_Mutation	13	95232153	C	T	32	88
BRCA	TCGA-A2-A0SY	FOXA1	SNP	Missense_Mutation	14	38061250	G	A	46	93
BRCA	TCGA-A2-A0SY	TOMM20L	SNP	Missense_Mutation	14	58875253	G	C	45	68
BRCA	TCGA-A2-A0SY	OR4F15	SNP	Silent	15	102358587	C	G	32	55
BRCA	TCGA-A2-A0SY	HOMER2	SNP	Missense_Mutation	15	83518532	C	T	30	81
BRCA	TCGA-A2-A0SY	CDH1	INS	Frame_Shift_Ins	16	68772203	-	CA	54	55
BRCA	TCGA-A2-A0SY	FLII	SNP	Silent	17	18157406	C	T	29	75
BRCA	TCGA-A2-A0SY	PLXDC1	SNP	Splice_site	17	37265502	G	A	37	68
BRCA	TCGA-A2-A0SY	FKBP10	SNP	Missense_Mutation	17	39977965	G	A	41	73
BRCA	TCGA-A2-A0SY	KLHL11	SNP	Missense_Mutation	17	40021290	G	A	39	74
BRCA	TCGA-A2-A0SY	STAT5B	SNP	Silent	17	40370189	G	C	45	64
BRCA	TCGA-A2-A0SY	NPEPPS	SNP	Missense_Mutation	17	45664628	C	G	30	100
BRCA	TCGA-A2-A0SY	TRIM25	SNP	Silent	17	54990828	G	A	46	66
BRCA	TCGA-A2-A0SY	SRSF1	SNP	Silent	17	56084325	G	A	37	58
BRCA	TCGA-A2-A0SY	CACNG4	SNP	Missense_Mutation	17	65026894	C	T	31	85
BRCA	TCGA-A2-A0SY	GPS2	DEL	Frame_Shift_Del	17	7217617	C	-	30	93
BRCA	TCGA-A2-A0SY	RAB37	SNP	Missense_Mutation	17	72739463	C	G	32	93
BRCA	TCGA-A2-A0SY	METTL23	SNP	Missense_Mutation	17	74729730	G	C	45	73
BRCA	TCGA-A2-A0SY	PPP1R27	SNP	Missense_Mutation	17	79792496	C	T	30	94
BRCA	TCGA-A2-A0SY	EMR2	SNP	Missense_Mutation	19	14884796	G	T	45	61
BRCA	TCGA-A2-A0SY	ZNF567	SNP	Missense_Mutation	19	37211247	T	A	58	59
BRCA	TCGA-A2-A0SY	HRC	SNP	Missense_Mutation	19	49657744	C	T	29	58
BRCA	TCGA-A2-A0SY	HRC	SNP	Nonsense_Mutation	19	49657822	C	A	29	60
BRCA	TCGA-A2-A0SY	TRPM4	SNP	Silent	19	49671554	C	T	31	41
BRCA	TCGA-A2-A0SY	CATSPERD	SNP	Silent	19	5724831	G	A	45	58
BRCA	TCGA-A2-A0SY	C3	SNP	Missense_Mutation	19	6712586	G	A	33	93
BRCA	TCGA-A2-A0SY	WDR33	SNP	Missense_Mutation	2	128476996	G	C	33	58
BRCA	TCGA-A2-A0SY	SCN1A	SNP	Silent	2	166848244	G	C	41	48
BRCA	TCGA-A2-A0SY	TTN	SNP	Missense_Mutation	2	179560781	C	G	32	78
BRCA	TCGA-A2-A0SY	TTN	SNP	Splice_Site	2	179584560	C	G	32	100
BRCA	TCGA-A2-A0SY	APOB	SNP	Silent	2	21247970	A	G	6	50
BRCA	TCGA-A2-A0SY	PAX3	SNP	Missense_Mutation	2	223158461	G	A	41	51
BRCA	TCGA-A2-A0SY	KIF1A	SNP	Missense_Mutation	2	241712662	C	A	23	94
BRCA	TCGA-A2-A0SY	DNAH6	SNP	Missense_Mutation	2	84777043	G	C	33	80
BRCA	TCGA-A2-A0SY	CTCFL	SNP	Missense_Mutation	20	56094287	G	A	38	51
BRCA	TCGA-A2-A0SY	OPRL1	SNP	Missense_Mutation	20	62730133	C	T	19	51
BRCA	TCGA-A2-A0SY	SCAF4	INS	Frame_Shift_Ins	21	33043723	-	CT	26	63
BRCA	TCGA-A2-A0SY	THAP7	SNP	Missense_Mutation	22	21354267	C	G	30	79
BRCA	TCGA-A2-A0SY	LRCH2	SNP	Missense_Mutation	23	114391183	G	A	36	49
BRCA	TCGA-A2-A0SY	THOC2	SNP	Silent	23	122820419	C	T	18	45
BRCA	TCGA-A2-A0SY	SMARCA1	SNP	Missense_Mutation	23	128631942	G	C	45	96
BRCA	TCGA-A2-A0SY	IL3RA	SNP	Missense_Mutation	23	1497591	G	A	39	48
BRCA	TCGA-A2-A0SY	NHS	SNP	Missense_Mutation	23	17746433	G	A	45	96
BRCA	TCGA-A2-A0SY	TAB3	SNP	Missense_Mutation	23	30872359	C	G	32	79
BRCA	TCGA-A2-A0SY	DDX3X	SNP	Silent	23	41202029	G	A	33	77
BRCA	TCGA-A2-A0SY	PIM2	SNP	Missense_Mutation	23	48771429	C	G	21	49
BRCA	TCGA-A2-A0SY	FAM123B	SNP	Silent	23	63409936	A	G	7	55
BRCA	TCGA-A2-A0SY	OTUD6A	SNP	Missense_Mutation	23	69283015	C	T	19	51
BRCA	TCGA-A2-A0SY	SPICE1	SNP	Missense_Mutation	3	113172603	G	C	45	59
BRCA	TCGA-A2-A0SY	UMPS	SNP	Missense_Mutation	3	124456998	G	C	45	80
BRCA	TCGA-A2-A0SY	PIK3CB	SNP	Missense_Mutation	3	138426040	C	G	32	51
BRCA	TCGA-A2-A0SY	CHST2	SNP	Missense_Mutation	3	142840752	G	A	38	83
BRCA	TCGA-A2-A0SY	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A2-A0SY	MCF2L2	SNP	Missense_Mutation	3	183041052	G	A	37	56
BRCA	TCGA-A2-A0SY	RARB	SNP	Missense_Mutation	3	25502710	G	C	45	100
BRCA	TCGA-A2-A0SY	TRANK1	SNP	Silent	3	36902452	G	A	45	57
BRCA	TCGA-A2-A0SY	TRANK1	SNP	Missense_Mutation	3	36902596	G	C	45	54
BRCA	TCGA-A2-A0SY	TGM4	SNP	Missense_Mutation	3	44945471	G	A	37	51
BRCA	TCGA-A2-A0SY	GRM2	SNP	Silent	3	51743248	C	T	26	53
BRCA	TCGA-A2-A0SY	CACNA1D	SNP	Missense_Mutation	3	53757826	A	G	10	72
BRCA	TCGA-A2-A0SY	SEC24B	SNP	Silent	4	110448569	C	T	32	53
BRCA	TCGA-A2-A0SY	LARP7	SNP	Missense_Mutation	4	113568490	C	G	32	90
BRCA	TCGA-A2-A0SY	PRMT10	SNP	Nonsense_Mutation	4	148564057	G	A	45	83
BRCA	TCGA-A2-A0SY	FSTL5	SNP	Missense_Mutation	4	163032438	C	T	29	47
BRCA	TCGA-A2-A0SY	ADD1	SNP	Missense_Mutation	4	2906605	G	A	45	100
BRCA	TCGA-A2-A0SY	CWH43	SNP	Missense_Mutation	4	49030703	G	A	45	80
BRCA	TCGA-A2-A0SY	SRP72	SNP	Silent	4	57355616	C	T	29	65
BRCA	TCGA-A2-A0SY	ARHGAP24	SNP	Silent	4	86916664	A	T	9	42
BRCA	TCGA-A2-A0SY	GDF9	SNP	Missense_Mutation	5	132197896	C	G	32	52
BRCA	TCGA-A2-A0SY	AFF4	SNP	Silent	5	132270412	G	A	47	46
BRCA	TCGA-A2-A0SY	DNAH5	SNP	Missense_Mutation	5	13752344	G	C	33	87
BRCA	TCGA-A2-A0SY	C5orf65	SNP	Silent	5	138728026	C	T	24	51
BRCA	TCGA-A2-A0SY	PCDHGA11	SNP	Missense_Mutation	5	140802020	G	A	33	60
BRCA	TCGA-A2-A0SY	ENSG00000218227	SNP	Missense_Mutation	5	177482635	G	A	38	63
BRCA	TCGA-A2-A0SY	ADAMTS2	SNP	Missense_Mutation	5	178552015	C	T	31	58
BRCA	TCGA-A2-A0SY	MAST4	SNP	Missense_Mutation	5	66396326	C	G	17	100
BRCA	TCGA-A2-A0SY	CMYA5	SNP	Missense_Mutation	5	79095305	G	C	33	56
BRCA	TCGA-A2-A0SY	KIAA0825	SNP	Silent	5	93732078	C	T	29	60
BRCA	TCGA-A2-A0SY	ATG5	SNP	Missense_Mutation	6	106740932	G	C	33	88
BRCA	TCGA-A2-A0SY	LAMA2	SNP	Missense_Mutation	6	129781390	G	C	33	100
BRCA	TCGA-A2-A0SY	ARG1	SNP	Missense_Mutation	6	131903781	C	G	32	55
BRCA	TCGA-A2-A0SY	MYB	DEL	Frame_Shift_Del	6	135515023	CAATGTCCCTCAGC	-	29	68
BRCA	TCGA-A2-A0SY	HLA-G	SNP	Silent	6	29796381	C	T	27	47
BRCA	TCGA-A2-A0SY	NQO2	SNP	Missense_Mutation	6	3017179	G	A	41	71
BRCA	TCGA-A2-A0SY	TINAG	SNP	Missense_Mutation	6	54191643	G	C	33	66
BRCA	TCGA-A2-A0SY	EYS	SNP	Missense_Mutation	6	65301057	C	T	19	56
BRCA	TCGA-A2-A0SY	PPP1R3A	SNP	Missense_Mutation	7	113558451	C	G	32	84
BRCA	TCGA-A2-A0SY	KCND2	SNP	Missense_Mutation	7	120387763	G	C	33	98
BRCA	TCGA-A2-A0SY	ENSG00000183470	SNP	Missense_Mutation	7	132412276	C	G	32	61
BRCA	TCGA-A2-A0SY	SNX13	SNP	Missense_Mutation	7	17913164	C	T	31	99
BRCA	TCGA-A2-A0SY	MAGI2	SNP	Missense_Mutation	7	77885377	C	T	31	100
BRCA	TCGA-A2-A0SY	EIF2C2	SNP	Missense_Mutation	8	141570514	G	A	41	99
BRCA	TCGA-A2-A0SY	HEATR7A	SNP	Silent	8	145255363	C	T	24	52
BRCA	TCGA-A2-A0SY	HSF1	SNP	Missense_Mutation	8	145537880	G	A	45	78
BRCA	TCGA-A2-A0SY	ARHGEF10	SNP	Missense_Mutation	8	1844604	G	C	45	95
BRCA	TCGA-A2-A0SY	LPL	SNP	Silent	8	19818493	C	G	29	46
BRCA	TCGA-A2-A0SY	GFRA2	SNP	Missense_Mutation	8	21608226	G	T	41	97
BRCA	TCGA-A2-A0SY	AGPAT6	SNP	Missense_Mutation	8	41471927	A	G	13	69
BRCA	TCGA-A2-A0SY	KCNV2	SNP	Silent	9	2729631	G	A	33	42
BRCA	TCGA-A2-A0SY	TAF1L	SNP	Missense_Mutation	9	32633918	G	C	33	53
BRCA	TCGA-A2-A0SY	DMRT1	SNP	Nonsense_Mutation	9	847104	C	T	29	76
BRCA	TCGA-A2-A0T0	AGL	SNP	Missense_Mutation	1	100330007	G	C	46	87
BRCA	TCGA-A2-A0T0	NTNG1	SNP	Silent	1	107963749	T	C	63	89
BRCA	TCGA-A2-A0T0	CELSR2	SNP	Missense_Mutation	1	109815559	G	A	41	66
BRCA	TCGA-A2-A0T0	FCGR1B	SNP	Nonsense_Mutation	1	120927202	G	A	45	53
BRCA	TCGA-A2-A0T0	TDRKH	SNP	Missense_Mutation	1	151747553	C	G	17	45
BRCA	TCGA-A2-A0T0	PGLYRP4	SNP	Silent	1	153312921	G	A	35	46
BRCA	TCGA-A2-A0T0	ATP8B2	SNP	Silent	1	154300293	T	G	55	49
BRCA	TCGA-A2-A0T0	METTL11B	SNP	Missense_Mutation	1	170129793	G	T	33	80
BRCA	TCGA-A2-A0T0	UCHL5	SNP	Missense_Mutation	1	192998533	T	C	59	89
BRCA	TCGA-A2-A0T0	UBR4	SNP	Missense_Mutation	1	19464664	T	G	54	90
BRCA	TCGA-A2-A0T0	LMOD1	SNP	Missense_Mutation	1	201869266	T	C	54	55
BRCA	TCGA-A2-A0T0		SNP	Missense_Mutation	1	211380707	G	C	41	81
BRCA	TCGA-A2-A0T0	HSPG2	SNP	Missense_Mutation	1	22206964	G	C	44	71
BRCA	TCGA-A2-A0T0	C1orf65	SNP	Missense_Mutation	1	223567939	C	G	26	60
BRCA	TCGA-A2-A0T0	PCNXL2	SNP	Missense_Mutation	1	233395012	G	C	38	52
BRCA	TCGA-A2-A0T0	HEATR1	SNP	Missense_Mutation	1	236739603	C	G	29	53
BRCA	TCGA-A2-A0T0	FMN2	SNP	Missense_Mutation	1	240555839	T	G	52	46
BRCA	TCGA-A2-A0T0	AHCTF1	SNP	Missense_Mutation	1	247067282	T	A	56	68
BRCA	TCGA-A2-A0T0	OR2G3	SNP	Missense_Mutation	1	247768964	T	C	60	56
BRCA	TCGA-A2-A0T0	OR2T34	SNP	Silent	1	248737771	G	T	47	38
BRCA	TCGA-A2-A0T0	OR2T10	SNP	Missense_Mutation	1	248756246	G	T	41	68
BRCA	TCGA-A2-A0T0	CSMD2	SNP	Missense_Mutation	1	34191097	C	T	31	100
BRCA	TCGA-A2-A0T0	DNALI1	SNP	Missense_Mutation	1	38030643	T	C	52	87
BRCA	TCGA-A2-A0T0	RSPO1	SNP	Silent	1	38078565	G	T	42	58
BRCA	TCGA-A2-A0T0	HEATR8	SNP	Missense_Mutation	1	55175761	C	A	18	64
BRCA	TCGA-A2-A0T0	ABCA4	SNP	Missense_Mutation	1	94543428	G	T	43	75
BRCA	TCGA-A2-A0T0	AGRN	SNP	Silent	1	957718	G	A	41	56
BRCA	TCGA-A2-A0T0	PNLIPRP3	SNP	Missense_Mutation	10	118236225	A	T	1	71
BRCA	TCGA-A2-A0T0	WDR11	DEL	Frame_Shift_Del	10	122646224	AATCTGAACTT	-	1	91
BRCA	TCGA-A2-A0T0	ZNF438	SNP	Nonsense_Mutation	10	31139084	G	A	46	81
BRCA	TCGA-A2-A0T0	TET1	SNP	Missense_Mutation	10	70332118	G	A	35	59
BRCA	TCGA-A2-A0T0	SFMBT2	SNP	Silent	10	7318923	T	C	52	31
BRCA	TCGA-A2-A0T0	NPAT	SNP	Missense_Mutation	11	108040720	C	T	18	87
BRCA	TCGA-A2-A0T0	DSCAML1	DEL	In_Frame_Del	11	117302417	GACTTCACATTCTTCCTG	-	45	82
BRCA	TCGA-A2-A0T0	NUP98	DEL	Frame_Shift_Del	11	3752719	CCGGACT	-	26	44
BRCA	TCGA-A2-A0T0	MADD	SNP	Silent	11	47296330	C	A	32	77
BRCA	TCGA-A2-A0T0	MS4A15	SNP	Silent	11	60540906	G	A	39	39
BRCA	TCGA-A2-A0T0	CNGA4	DNP	Missense_Mutation	11	6262921	TG	CT	55	88
BRCA	TCGA-A2-A0T0	DEAF1	SNP	Silent	11	654016	G	A	38	49
BRCA	TCGA-A2-A0T0	ACTN3	SNP	Missense_Mutation	11	66329595	G	A	41	94
BRCA	TCGA-A2-A0T0	TCIRG1	SNP	Missense_Mutation	11	67818248	A	C	5	85
BRCA	TCGA-A2-A0T0	PLBD2	SNP	Missense_Mutation	12	113812735	A	G	6	70
BRCA	TCGA-A2-A0T0	PRB4	SNP	Missense_Mutation	12	11461466	G	C	47	51
BRCA	TCGA-A2-A0T0	CLIP1	SNP	Silent	12	122812589	G	A	34	28
BRCA	TCGA-A2-A0T0	KRT85	SNP	Missense_Mutation	12	52760852	T	A	58	90
BRCA	TCGA-A2-A0T0	KRT73	SNP	Missense_Mutation	12	53002195	C	T	26	32
BRCA	TCGA-A2-A0T0	SILV	SNP	Silent	12	56351004	A	G	7	48
BRCA	TCGA-A2-A0T0	BRCA2	SNP	Nonsense_Mutation	13	32953476	T	G	61	73
BRCA	TCGA-A2-A0T0	MYCBP2	SNP	Silent	13	77754280	C	T	19	40
BRCA	TCGA-A2-A0T0	SLITRK6	SNP	Nonsense_Mutation	13	86368270	C	A	21	80
BRCA	TCGA-A2-A0T0	TECPR2	SNP	Missense_Mutation	14	102901119	C	G	28	50
BRCA	TCGA-A2-A0T0	OR4M1	SNP	Missense_Mutation	14	20249295	G	A	36	55
BRCA	TCGA-A2-A0T0	AKAP6	SNP	Missense_Mutation	14	33293160	T	A	50	66
BRCA	TCGA-A2-A0T0	CPSF2	SNP	Silent	14	92628064	A	G	16	53
BRCA	TCGA-A2-A0T0	MAPK6	SNP	Silent	15	52356303	T	C	60	52
BRCA	TCGA-A2-A0T0	TCF12	SNP	Missense_Mutation	15	57545524	C	A	28	100
BRCA	TCGA-A2-A0T0	PRM3	SNP	Splice_site	16	11367145	G	T	41	62
BRCA	TCGA-A2-A0T0	MYH11	SNP	Missense_Mutation	16	15833955	C	G	30	94
BRCA	TCGA-A2-A0T0	MYH11	SNP	Missense_Mutation	16	15850316	G	T	42	98
BRCA	TCGA-A2-A0T0	SMG1	SNP	Missense_Mutation	16	18869547	C	A	30	74
BRCA	TCGA-A2-A0T0	ACSM5	SNP	Splice_Site	16	20442397	T	C	57	77
BRCA	TCGA-A2-A0T0	ZP2	SNP	Missense_Mutation	16	21212763	C	G	18	67
BRCA	TCGA-A2-A0T0	ZNF434	SNP	Missense_Mutation	16	3433091	G	C	47	52
BRCA	TCGA-A2-A0T0	VASN	SNP	Missense_Mutation	16	4431912	C	A	26	83
BRCA	TCGA-A2-A0T0	ABCC12	SNP	Missense_Mutation	16	48167699	G	T	47	88
BRCA	TCGA-A2-A0T0	NUDT21	SNP	Missense_Mutation	16	56481707	A	C	9	93
BRCA	TCGA-A2-A0T0	ZNRF1	SNP	Missense_Mutation	16	75138732	C	G	28	72
BRCA	TCGA-A2-A0T0	EPN2	DEL	Frame_Shift_Del	17	19235190	CCCAAAACAATGGAACTACCAG	-	30	95
BRCA	TCGA-A2-A0T0	IFT20	SNP	Splice_Site	17	26662497	A	G	16	33
BRCA	TCGA-A2-A0T0	KAT2A	SNP	Splice_site	17	40266620	G	A	45	52
BRCA	TCGA-A2-A0T0	STAT3	SNP	Silent	17	40468877	G	A	46	74
BRCA	TCGA-A2-A0T0	EPN3	SNP	Missense_Mutation	17	48614030	C	T	31	99
BRCA	TCGA-A2-A0T0	ABCA6	SNP	Missense_Mutation	17	67094096	G	C	41	75
BRCA	TCGA-A2-A0T0	KIAA0195	SNP	Missense_Mutation	17	73491664	C	G	24	63
BRCA	TCGA-A2-A0T0	POLR2A	SNP	Missense_Mutation	17	7405859	C	G	29	68
BRCA	TCGA-A2-A0T0	P4HB	SNP	Missense_Mutation	17	79803027	T	A	50	64
BRCA	TCGA-A2-A0T0	ANKRD30B	SNP	Silent	18	14782552	T	C	54	37
BRCA	TCGA-A2-A0T0	SMARCA4	SNP	Nonsense_Mutation	19	11170528	G	T	41	94
BRCA	TCGA-A2-A0T0	CYP4F2	SNP	Missense_Mutation	19	15990642	G	C	47	82
BRCA	TCGA-A2-A0T0	CYP4F11	SNP	Missense_Mutation	19	16034822	G	C	33	52
BRCA	TCGA-A2-A0T0	ZNF101	SNP	Missense_Mutation	19	19790274	G	A	38	43
BRCA	TCGA-A2-A0T0	ZNF528	SNP	Splice_site	19	52918378	G	C	33	52
BRCA	TCGA-A2-A0T0	GPR108	SNP	Missense_Mutation	19	6731281	C	T	19	52
BRCA	TCGA-A2-A0T0	MUC16	SNP	Missense_Mutation	19	9086543	G	T	41	48
BRCA	TCGA-A2-A0T0	OR7D2	SNP	Missense_Mutation	19	9297338	A	G	2	50
BRCA	TCGA-A2-A0T0	ZNF560	SNP	Missense_Mutation	19	9578743	C	A	24	50
BRCA	TCGA-A2-A0T0	POLR1B	SNP	Splice_Site	2	113321941	A	G	7	90
BRCA	TCGA-A2-A0T0	MAP3K2	SNP	Silent	2	128084359	T	A	55	42
BRCA	TCGA-A2-A0T0	MYO7B	SNP	Missense_Mutation	2	128366364	G	A	40	45
BRCA	TCGA-A2-A0T0	NBAS	SNP	Missense_Mutation	2	15378705	C	T	28	51
BRCA	TCGA-A2-A0T0	TTN	SNP	Missense_Mutation	2	179398516	G	A	39	64
BRCA	TCGA-A2-A0T0	TTN	SNP	Nonsense_Mutation	2	179437368	A	T	16	52
BRCA	TCGA-A2-A0T0	TTN	DEL	In_Frame_Del	2	179441108	CAGTGA	-	29	100
BRCA	TCGA-A2-A0T0	HIBCH	SNP	Missense_Mutation	2	191117010	C	G	24	93
BRCA	TCGA-A2-A0T0	COL4A4	SNP	Missense_Mutation	2	227886853	G	C	43	66
BRCA	TCGA-A2-A0T0	CAD	DNP	Missense_Mutation	2	27465275	GG	CT	43	97
BRCA	TCGA-A2-A0T0	ALK	DEL	In_Frame_Del	2	29432670	ATCCCG	-	8	90
BRCA	TCGA-A2-A0T0	KIAA1841	SNP	Missense_Mutation	2	61343192	A	G	3	68
BRCA	TCGA-A2-A0T0	SFXN5	SNP	Splice_Site	2	73215386	C	T	18	85
BRCA	TCGA-A2-A0T0	ANKRD36C	SNP	Missense_Mutation	2	96546211	C	T	28	51
BRCA	TCGA-A2-A0T0	SSTR4	SNP	Nonsense_Mutation	20	23017141	G	T	41	76
BRCA	TCGA-A2-A0T0	BPIFB6	SNP	Silent	20	31627293	C	T	25	50
BRCA	TCGA-A2-A0T0	RAB22A	DNP	Missense_Mutation	20	56929271	AG	CT	11	89
BRCA	TCGA-A2-A0T0	USP25	SNP	Missense_Mutation	21	17205712	C	A	17	80
BRCA	TCGA-A2-A0T0	KRTAP20-3	SNP	Silent	21	32015243	C	A	28	56
BRCA	TCGA-A2-A0T0	TTC3	SNP	Missense_Mutation	21	38567987	G	C	36	53
BRCA	TCGA-A2-A0T0	MX1	SNP	Silent	21	42824598	G	A	45	36
BRCA	TCGA-A2-A0T0	CYTSA	SNP	Missense_Mutation	22	24717313	C	T	20	82
BRCA	TCGA-A2-A0T0	ADSL	SNP	Missense_Mutation	22	40746017	C	A	32	99
BRCA	TCGA-A2-A0T0	PHF21B	SNP	Silent	22	45312307	G	A	37	57
BRCA	TCGA-A2-A0T0	TRABD	SNP	Missense_Mutation	22	50632861	G	T	42	72
BRCA	TCGA-A2-A0T0	ARMCX1	SNP	Missense_Mutation	23	100807921	G	A	38	66
BRCA	TCGA-A2-A0T0	CDR1	SNP	Missense_Mutation	23	139866173	T	G	58	49
BRCA	TCGA-A2-A0T0	ZFP92	SNP	Missense_Mutation	23	152686529	G	A	39	61
BRCA	TCGA-A2-A0T0	ABCD1	SNP	Missense_Mutation	23	152991542	G	A	39	74
BRCA	TCGA-A2-A0T0	CXorf22	SNP	Missense_Mutation	23	35985882	A	G	16	53
BRCA	TCGA-A2-A0T0	ZNF81	SNP	Missense_Mutation	23	47774342	G	C	34	50
BRCA	TCGA-A2-A0T0	HDAC6	SNP	Silent	23	48682346	T	C	55	42
BRCA	TCGA-A2-A0T0	CCDC120	SNP	Missense_Mutation	23	48925640	T	C	56	55
BRCA	TCGA-A2-A0T0	TIGIT	SNP	Missense_Mutation	3	114018446	G	C	42	56
BRCA	TCGA-A2-A0T0	TMEM39A	SNP	Silent	3	119150930	G	C	33	57
BRCA	TCGA-A2-A0T0	POPDC2	SNP	Silent	3	119379073	C	T	17	53
BRCA	TCGA-A2-A0T0	CASR	SNP	Missense_Mutation	3	121980913	A	T	6	78
BRCA	TCGA-A2-A0T0	COL6A6	SNP	Missense_Mutation	3	130284028	C	A	25	68
BRCA	TCGA-A2-A0T0	ARMC8	SNP	Missense_Mutation	3	137983034	G	C	48	97
BRCA	TCGA-A2-A0T0	CEP70	SNP	Missense_Mutation	3	138216888	G	C	33	73
BRCA	TCGA-A2-A0T0	CLSTN2	SNP	Missense_Mutation	3	140123537	C	A	30	97
BRCA	TCGA-A2-A0T0	PLCL2	SNP	Nonsense_Mutation	3	17053574	G	A	41	65
BRCA	TCGA-A2-A0T0	PLCL2	DEL	Frame_Shift_Del	3	17131237	CTTTTGAAATATG	-	32	91
BRCA	TCGA-A2-A0T0	GP5	SNP	Silent	3	194118427	C	T	28	48
BRCA	TCGA-A2-A0T0	UBE2E1	SNP	Missense_Mutation	3	23932006	C	G	22	100
BRCA	TCGA-A2-A0T0	XIRP1	SNP	Missense_Mutation	3	39229254	C	T	29	45
BRCA	TCGA-A2-A0T0	DALRD3	SNP	Missense_Mutation	3	49053734	C	A	22	80
BRCA	TCGA-A2-A0T0	ITIH1	SNP	Missense_Mutation	3	52820422	C	G	24	78
BRCA	TCGA-A2-A0T0	ROBO2	SNP	Missense_Mutation	3	77614134	T	C	59	94
BRCA	TCGA-A2-A0T0	C4orf21	DEL	Frame_Shift_Del	4	113483568	AAAGTAGTCCTGAATGTTTTTC	-	13	48
BRCA	TCGA-A2-A0T0	ANKRD50	SNP	Missense_Mutation	4	125631416	G	C	40	97
BRCA	TCGA-A2-A0T0	ZNF827	SNP	Missense_Mutation	4	146791465	C	T	22	57
BRCA	TCGA-A2-A0T0	CC2D2A	SNP	Missense_Mutation	4	15539732	A	T	3	75
BRCA	TCGA-A2-A0T0	CC2D2A	SNP	Silent	4	15539734	C	T	27	47
BRCA	TCGA-A2-A0T0	DDX60L	SNP	Missense_Mutation	4	169292767	T	A	64	60
BRCA	TCGA-A2-A0T0	LETM1	SNP	Missense_Mutation	4	1838173	C	T	29	95
BRCA	TCGA-A2-A0T0	PDGFRA	SNP	Missense_Mutation	4	55156541	G	C	40	100
BRCA	TCGA-A2-A0T0	UGT2B15	SNP	Missense_Mutation	4	69519794	T	C	50	60
BRCA	TCGA-A2-A0T0	ARHGAP24	SNP	Splice_Site	4	86863218	G	T	35	100
BRCA	TCGA-A2-A0T0	HERC5	SNP	Nonsense_Mutation	4	89388332	C	A	29	69
BRCA	TCGA-A2-A0T0	SLCO4C1	SNP	Missense_Mutation	5	101572605	A	G	2	70
BRCA	TCGA-A2-A0T0	HSD17B4	SNP	Missense_Mutation	5	118824925	C	G	32	58
BRCA	TCGA-A2-A0T0	ADAMTS19	SNP	Missense_Mutation	5	128863507	C	G	32	83
BRCA	TCGA-A2-A0T0	HSPA4	SNP	Missense_Mutation	5	132412489	G	C	36	54
BRCA	TCGA-A2-A0T0	DNAH5	SNP	Nonsense_Mutation	5	13841155	G	A	46	68
BRCA	TCGA-A2-A0T0	PCDHB16	SNP	Silent	5	140562836	C	T	17	54
BRCA	TCGA-A2-A0T0	PCDHB13	SNP	Silent	5	140595171	G	A	38	44
BRCA	TCGA-A2-A0T0	GRIA1	SNP	Missense_Mutation	5	153144138	G	C	33	60
BRCA	TCGA-A2-A0T0	C1QTNF2	SNP	Missense_Mutation	5	159781785	G	T	38	46
BRCA	TCGA-A2-A0T0	DOCK2	SNP	Missense_Mutation	5	169507239	G	T	48	49
BRCA	TCGA-A2-A0T0	ADAMTS2	SNP	Silent	5	178585812	G	A	41	60
BRCA	TCGA-A2-A0T0	TARS	SNP	Silent	5	33456148	T	C	49	61
BRCA	TCGA-A2-A0T0	PELO	SNP	Missense_Mutation	5	52096347	G	T	38	92
BRCA	TCGA-A2-A0T0	LRRC70	SNP	Nonsense_Mutation	5	61875866	C	T	29	60
BRCA	TCGA-A2-A0T0	ADAMTS6	SNP	Missense_Mutation	5	64748724	G	T	35	95
BRCA	TCGA-A2-A0T0	ARRDC3	SNP	Splice_Site	5	90671327	C	T	18	99
BRCA	TCGA-A2-A0T0	KIAA0825	SNP	Missense_Mutation	5	93752964	G	C	40	53
BRCA	TCGA-A2-A0T0	HIST1H2BC	SNP	Silent	6	26123995	C	G	29	58
BRCA	TCGA-A2-A0T0	MSH5	SNP	Splice_Site	6	31729393	G	C	44	80
BRCA	TCGA-A2-A0T0	ZNF318	SNP	Missense_Mutation	6	43323219	C	T	31	99
BRCA	TCGA-A2-A0T0	COL12A1	SNP	Missense_Mutation	6	75899454	A	T	14	66
BRCA	TCGA-A2-A0T0	RELN	SNP	Missense_Mutation	7	103216144	C	A	32	96
BRCA	TCGA-A2-A0T0	TAS2R16	SNP	Missense_Mutation	7	122635007	A	C	10	59
BRCA	TCGA-A2-A0T0	GPR37	SNP	Missense_Mutation	7	124387321	T	G	55	79
BRCA	TCGA-A2-A0T0	SP4	SNP	Silent	7	21550872	C	T	17	68
BRCA	TCGA-A2-A0T0	DNAH11	SNP	Silent	7	21659621	C	T	19	48
BRCA	TCGA-A2-A0T0	ABHD11	SNP	Silent	7	73151593	A	T	6	29
BRCA	TCGA-A2-A0T0	ZNF394	SNP	Missense_Mutation	7	99097679	T	C	58	51
BRCA	TCGA-A2-A0T0	UBR5	SNP	Silent	8	103299695	G	A	38	67
BRCA	TCGA-A2-A0T0	PTK2	SNP	Missense_Mutation	8	141753376	C	A	30	85
BRCA	TCGA-A2-A0T0	BAI1	DEL	In_Frame_Del	8	143562899	GCT	-	42	77
BRCA	TCGA-A2-A0T0	BAI1	DEL	Frame_Shift_Del	8	143562904	G	-	34	71
BRCA	TCGA-A2-A0T0	EEF1D	SNP	Silent	8	144669010	A	T	15	42
BRCA	TCGA-A2-A0T0	PLEC	SNP	Missense_Mutation	8	144994265	G	C	43	73
BRCA	TCGA-A2-A0T0	DOCK5	SNP	Splice_site	8	25193755	G	A	41	73
BRCA	TCGA-A2-A0T0	UNC5D	SNP	Missense_Mutation	8	35541224	T	A	58	77
BRCA	TCGA-A2-A0T0	ASPH	SNP	Missense_Mutation	8	62563641	G	C	41	55
BRCA	TCGA-A2-A0T0	CSPP1	SNP	Missense_Mutation	8	68089921	T	C	61	73
BRCA	TCGA-A2-A0T0	PREX2	SNP	Missense_Mutation	8	69033276	T	A	64	58
BRCA	TCGA-A2-A0T0	CACNA1B	SNP	Missense_Mutation	9	140772590	T	G	56	55
BRCA	TCGA-A2-A0T0	ANKRD20A3	SNP	Missense_Mutation	9	42410478	A	T	4	52
BRCA	TCGA-A2-A0T0	SYK	SNP	Missense_Mutation	9	93607735	C	G	26	97
BRCA	TCGA-A2-A0T1	LOC440563	SNP	Missense_Mutation	1	13183440	G	A	48	57
BRCA	TCGA-A2-A0T1	IRF2BP2	SNP	Missense_Mutation	1	234744272	G	T	46	73
BRCA	TCGA-A2-A0T1	FAM160A2	DEL	Frame_Shift_Del	11	6232828	G	-	47	98
BRCA	TCGA-A2-A0T1	RPLP0	SNP	Silent	12	120636935	A	G	2	71
BRCA	TCGA-A2-A0T1	LRRC10	DEL	Frame_Shift_Del	12	70003803	A	-	9	42
BRCA	TCGA-A2-A0T1	MAP3K9	DEL	Frame_Shift_Del	14	71197420	A	-	9	77
BRCA	TCGA-A2-A0T1	ADAMTS17	SNP	Missense_Mutation	15	100871204	G	A	41	78
BRCA	TCGA-A2-A0T1	NPTN	INS	Frame_Shift_Ins	15	73889543	-	A	17	100
BRCA	TCGA-A2-A0T1	IL27	SNP	Splice_Site	16	28515198	C	A	17	72
BRCA	TCGA-A2-A0T1	C17orf53	SNP	Silent	17	42226188	C	T	24	48
BRCA	TCGA-A2-A0T1	TP53	SNP	Missense_Mutation	17	7577121	G	A	38	65
BRCA	TCGA-A2-A0T1	INSIG2	SNP	Missense_Mutation	2	118864382	A	G	10	92
BRCA	TCGA-A2-A0T1	ZNF142	SNP	Silent	2	219509721	C	T	26	47
BRCA	TCGA-A2-A0T1	CASS4	SNP	Missense_Mutation	20	54987537	A	T	10	72
BRCA	TCGA-A2-A0T1	MAGED1	DEL	Frame_Shift_Del	23	51639818	G	-	47	73
BRCA	TCGA-A2-A0T1	HLTF	SNP	Missense_Mutation	3	148750037	A	C	13	45
BRCA	TCGA-A2-A0T1	HIST1H2BK	SNP	Missense_Mutation	6	27114334	C	T	26	91
BRCA	TCGA-A2-A0T1	FAM135A	SNP	Silent	6	71212389	G	A	38	48
BRCA	TCGA-A2-A0T1	DOCK4	SNP	Missense_Mutation	7	111629136	T	A	59	91
BRCA	TCGA-A2-A0T1	SPTAN1	SNP	Missense_Mutation	9	131380311	G	A	39	100
BRCA	TCGA-A2-A0T2	CHRNB2	SNP	Missense_Mutation	1	154543819	C	T	23	72
BRCA	TCGA-A2-A0T2	LAMC1	DEL	Frame_Shift_Del	1	183093858	GACAACATCGATC	-	45	74
BRCA	TCGA-A2-A0T2	EIF2C1	SNP	Missense_Mutation	1	36381040	A	G	14	79
BRCA	TCGA-A2-A0T2	MPP7	SNP	Silent	10	28378685	G	A	40	45
BRCA	TCGA-A2-A0T2	MUC2	SNP	Missense_Mutation	11	1103818	G	A	38	44
BRCA	TCGA-A2-A0T2	FANCF	SNP	Missense_Mutation	11	22646798	T	A	55	28
BRCA	TCGA-A2-A0T2	SLC39A5	SNP	Silent	12	56630189	A	C	7	55
BRCA	TCGA-A2-A0T2	PROZ	SNP	Missense_Mutation	13	113814455	A	C	3	51
BRCA	TCGA-A2-A0T2	RYR3	SNP	Missense_Mutation	15	34151902	G	A	40	87
BRCA	TCGA-A2-A0T2	ATP2A1	SNP	Missense_Mutation	16	28909621	C	T	19	98
BRCA	TCGA-A2-A0T2	ABCA9	SNP	Splice_site	17	67017883	C	G	24	86
BRCA	TCGA-A2-A0T2	TP53	SNP	Missense_Mutation	17	7578190	T	C	49	88
BRCA	TCGA-A2-A0T2	PLEKHG2	SNP	Missense_Mutation	19	39908303	C	T	27	67
BRCA	TCGA-A2-A0T2	ZNF773	SNP	Silent	19	58017763	G	A	34	47
BRCA	TCGA-A2-A0T2	HDLBP	SNP	Missense_Mutation	2	242176067	C	T	23	79
BRCA	TCGA-A2-A0T2	QPCT	INS	Frame_Shift_Ins	2	37586965	-	G	63	44
BRCA	TCGA-A2-A0T2	KIAA1210	SNP	Missense_Mutation	23	118230488	G	C	43	56
BRCA	TCGA-A2-A0T2	ETV5	SNP	Splice_Site	3	185823093	C	T	19	79
BRCA	TCGA-A2-A0T2	ABHD6	DEL	Frame_Shift_Del	3	58260470	C	-	30	69
BRCA	TCGA-A2-A0T2	RBM47	INS	Frame_Shift_Ins	4	40440780	-	A	57	90
BRCA	TCGA-A2-A0T2	NIPAL1	SNP	Silent	4	48037625	G	A	45	54
BRCA	TCGA-A2-A0T2	RELL2	SNP	Missense_Mutation	5	141019995	G	A	41	50
BRCA	TCGA-A2-A0T2	MBOAT1	SNP	Silent	6	20152998	C	T	29	62
BRCA	TCGA-A2-A0T2	NCR2	SNP	Missense_Mutation	6	41318437	C	G	21	44
BRCA	TCGA-A2-A0T2	WASL	SNP	Silent	7	123335910	T	C	58	62
BRCA	TCGA-A2-A0T2	PTK2B	SNP	Missense_Mutation	8	27315867	G	A	46	94
BRCA	TCGA-A2-A0T2	EYA1	SNP	Missense_Mutation	8	72211886	T	C	52	90
BRCA	TCGA-A2-A0T2	DENND4C	SNP	Missense_Mutation	9	19296154	C	T	29	99
BRCA	TCGA-A2-A0T2	IL11RA	SNP	Splice_Site	9	34655600	A	G	7	60
BRCA	TCGA-A2-A0T3	PRRC2C	SNP	Nonsense_Mutation	1	171527109	C	G	29	62
BRCA	TCGA-A2-A0T3	CFHR4	SNP	Missense_Mutation	1	196884227	C	A	17	42
BRCA	TCGA-A2-A0T3	SZT2	SNP	Silent	1	43914050	G	A	39	46
BRCA	TCGA-A2-A0T3	ZFYVE9	SNP	Missense_Mutation	1	52811772	C	T	31	70
BRCA	TCGA-A2-A0T3	ELTD1	SNP	Missense_Mutation	1	79358816	A	G	5	75
BRCA	TCGA-A2-A0T3	OR8H2	SNP	Missense_Mutation	11	55873220	G	T	34	50
BRCA	TCGA-A2-A0T3	PHRF1	SNP	Silent	11	607853	G	C	40	30
BRCA	TCGA-A2-A0T3	NRXN2	SNP	Missense_Mutation	11	64374729	G	A	39	59
BRCA	TCGA-A2-A0T3	PARPBP	SNP	Missense_Mutation	12	102572481	G	C	34	89
BRCA	TCGA-A2-A0T3	SCNN1A	SNP	Missense_Mutation	12	6458148	C	T	27	50
BRCA	TCGA-A2-A0T3	PLCD3	SNP	Missense_Mutation	17	43198282	C	T	31	61
BRCA	TCGA-A2-A0T3	PPM1E	SNP	Missense_Mutation	17	57057757	C	T	27	83
BRCA	TCGA-A2-A0T3	TP53	DEL	Frame_Shift_Del	17	7577051	TGAGGCTCCCCTTTCTTGCGGAGATTCTC	-	59	54
BRCA	TCGA-A2-A0T3	NETO1	SNP	Silent	18	70417577	G	T	38	64
BRCA	TCGA-A2-A0T3	MUC16	SNP	Missense_Mutation	19	9091513	G	T	44	45
BRCA	TCGA-A2-A0T3	SP9	SNP	Missense_Mutation	2	175202011	C	T	27	67
BRCA	TCGA-A2-A0T3	PGAP1	SNP	Silent	2	197709278	G	A	34	58
BRCA	TCGA-A2-A0T3	COL6A3	SNP	Nonsense_Mutation	2	238290029	C	A	30	85
BRCA	TCGA-A2-A0T3	KLHL30	SNP	Silent	2	239049602	C	T	28	70
BRCA	TCGA-A2-A0T3	CLIP4	SNP	Silent	2	29366667	C	A	29	75
BRCA	TCGA-A2-A0T3	SIRPB1	SNP	Missense_Mutation	20	1559200	C	A	28	51
BRCA	TCGA-A2-A0T3	GCFC1	SNP	Silent	21	34127560	C	T	23	98
BRCA	TCGA-A2-A0T3	HIRA	SNP	Silent	22	19348811	T	C	59	55
BRCA	TCGA-A2-A0T3	ARMCX2	SNP	Missense_Mutation	23	100911424	C	T	18	67
BRCA	TCGA-A2-A0T3	ODZ1	SNP	Missense_Mutation	23	123615786	C	A	26	74
BRCA	TCGA-A2-A0T3	USP9X	SNP	Silent	23	41075185	T	C	52	62
BRCA	TCGA-A2-A0T3	FAM9B	SNP	Silent	23	8998340	G	A	48	52
BRCA	TCGA-A2-A0T3	FAM9B	SNP	Splice_site	23	9000382	C	A	22	52
BRCA	TCGA-A2-A0T3	YEATS2	SNP	Missense_Mutation	3	183442226	G	C	42	77
BRCA	TCGA-A2-A0T3	LHFPL4	SNP	Nonsense_Mutation	3	9547779	G	T	45	99
BRCA	TCGA-A2-A0T3	PCDHB6	SNP	Silent	5	140531761	T	G	63	58
BRCA	TCGA-A2-A0T3	POU4F3	SNP	Missense_Mutation	5	145718682	G	C	42	53
BRCA	TCGA-A2-A0T3	SIM1	SNP	Missense_Mutation	6	100841453	C	T	27	66
BRCA	TCGA-A2-A0T3	DGKI	SNP	Missense_Mutation	7	137092668	G	A	46	83
BRCA	TCGA-A2-A0T3	C7orf71	INS	Frame_Shift_Ins	7	26686000	-	AA	33	57
BRCA	TCGA-A2-A0T3	GRIN3A	SNP	Missense_Mutation	9	104432629	C	A	25	100
BRCA	TCGA-A2-A0T3	KIAA1045	SNP	Missense_Mutation	9	34976648	G	T	46	90
BRCA	TCGA-A2-A0T3	MLANA	SNP	Silent	9	5892543	G	A	39	45
BRCA	TCGA-A2-A0T4	TDRKH	SNP	Silent	1	151748589	C	T	24	57
BRCA	TCGA-A2-A0T4	LINGO4	SNP	Missense_Mutation	1	151774034	G	T	43	97
BRCA	TCGA-A2-A0T4	FUBP1	SNP	Silent	1	78414918	A	G	7	50
BRCA	TCGA-A2-A0T4	CNNM1	SNP	Missense_Mutation	10	101150099	C	G	17	64
BRCA	TCGA-A2-A0T4	AMPD3	SNP	Missense_Mutation	11	10503734	C	T	23	38
BRCA	TCGA-A2-A0T4	MRGPRX4	SNP	Missense_Mutation	11	18194859	A	T	11	51
BRCA	TCGA-A2-A0T4	MEN1	SNP	Splice_Site	11	64574649	A	C	10	84
BRCA	TCGA-A2-A0T4	SF3B2	SNP	Missense_Mutation	11	65825830	C	T	29	82
BRCA	TCGA-A2-A0T4	CPT1A	SNP	Missense_Mutation	11	68548116	G	C	35	62
BRCA	TCGA-A2-A0T4	C11orf30	SNP	Silent	11	76171098	C	G	32	74
BRCA	TCGA-A2-A0T4	C11orf30	SNP	Silent	11	76171125	C	T	29	69
BRCA	TCGA-A2-A0T4	ZFP36L1	DEL	In_Frame_Del	14	69256739	GAT	-	41	83
BRCA	TCGA-A2-A0T4	PPCDC	SNP	Silent	15	75341501	C	T	21	69
BRCA	TCGA-A2-A0T4	HCFC1R1	DEL	In_Frame_Del	16	3073329	CTC	-	32	65
BRCA	TCGA-A2-A0T4	CDH1	INS	Frame_Shift_Ins	16	68862179	-	T	12	76
BRCA	TCGA-A2-A0T4	MFSD11	SNP	Missense_Mutation	17	74735072	C	G	18	97
BRCA	TCGA-A2-A0T4	IL1R2	SNP	Missense_Mutation	2	102626044	T	A	60	55
BRCA	TCGA-A2-A0T4	LRP2	SNP	Missense_Mutation	2	170060647	C	A	31	88
BRCA	TCGA-A2-A0T4	SPEG	SNP	Missense_Mutation	2	220337000	G	T	43	89
BRCA	TCGA-A2-A0T4	NLRC4	SNP	Missense_Mutation	2	32460481	A	G	4	69
BRCA	TCGA-A2-A0T4	CTPS2	DEL	Frame_Shift_Del	23	16716365	A	-	13	30
BRCA	TCGA-A2-A0T4	KDM6A	SNP	Splice_Site	23	44896936	T	G	57	82
BRCA	TCGA-A2-A0T4	CXorf26	SNP	Missense_Mutation	23	75392998	G	A	45	58
BRCA	TCGA-A2-A0T4	ZIC4	SNP	Missense_Mutation	3	147114016	G	A	40	71
BRCA	TCGA-A2-A0T4	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A0T4	CCR2	SNP	Nonsense_Mutation	3	46399979	C	T	23	64
BRCA	TCGA-A2-A0T4	FAM193A	SNP	Splice_site	4	2717831	G	C	35	94
BRCA	TCGA-A2-A0T4	SLC25A48	SNP	Missense_Mutation	5	135186164	C	T	27	60
BRCA	TCGA-A2-A0T4	PCDHGA12	SNP	Silent	5	140812078	C	A	23	38
BRCA	TCGA-A2-A0T4	DOCK2	SNP	Missense_Mutation	5	169135223	C	T	23	32
BRCA	TCGA-A2-A0T4	MCM3	SNP	Missense_Mutation	6	52129411	G	C	33	97
BRCA	TCGA-A2-A0T4	MCM3	SNP	Missense_Mutation	6	52129448	G	C	33	59
BRCA	TCGA-A2-A0T4	HMGCLL1	SNP	Silent	6	55441924	G	C	33	67
BRCA	TCGA-A2-A0T4	HMGCLL1	DNP	Missense_Mutation	6	55443840	GG	AC	47	79
BRCA	TCGA-A2-A0T4	THSD7A	SNP	Missense_Mutation	7	11581237	C	T	27	55
BRCA	TCGA-A2-A0T4	VWDE	SNP	Missense_Mutation	7	12373131	C	T	27	60
BRCA	TCGA-A2-A0T4	GPR37	SNP	Missense_Mutation	7	124387024	G	A	38	100
BRCA	TCGA-A2-A0T4	ARL4A	SNP	Silent	7	12728422	A	G	2	56
BRCA	TCGA-A2-A0T4	HOXA9	SNP	Missense_Mutation	7	27204866	G	T	46	100
BRCA	TCGA-A2-A0T4	ZMIZ2	SNP	Missense_Mutation	7	44802938	G	A	44	98
BRCA	TCGA-A2-A0T4	ZNF618	SNP	Nonsense_Mutation	9	116794996	C	T	25	96
BRCA	TCGA-A2-A0T4	IL11RA	SNP	Silent	9	34655292	C	T	26	54
BRCA	TCGA-A2-A0T6	NTNG1	SNP	Silent	1	107691449	G	A	40	44
BRCA	TCGA-A2-A0T6	HIST2H3PS2	SNP	Missense_Mutation	1	149400436	A	C	6	79
BRCA	TCGA-A2-A0T6	IVL	SNP	Silent	1	152883056	A	G	10	34
BRCA	TCGA-A2-A0T6	GRK5	SNP	Silent	10	121196345	C	T	23	47
BRCA	TCGA-A2-A0T6	FAM107B	SNP	Silent	10	14816537	C	T	20	58
BRCA	TCGA-A2-A0T6	ADAMTS15	SNP	Splice_Site	11	130340998	T	G	59	71
BRCA	TCGA-A2-A0T6	ATG13	SNP	Missense_Mutation	11	46687026	A	C	6	62
BRCA	TCGA-A2-A0T6	METTL12	SNP	Silent	11	62434166	T	G	59	48
BRCA	TCGA-A2-A0T6	CCDC88B	SNP	Missense_Mutation	11	64108900	A	C	6	60
BRCA	TCGA-A2-A0T6	SSSCA1	SNP	Missense_Mutation	11	65339159	G	A	38	63
BRCA	TCGA-A2-A0T6	UNC93B1	SNP	Silent	11	67770506	T	G	59	43
BRCA	TCGA-A2-A0T6	PDE2A	SNP	Missense_Mutation	11	72300262	A	C	6	83
BRCA	TCGA-A2-A0T6	NAB2	SNP	Missense_Mutation	12	57488479	T	G	59	68
BRCA	TCGA-A2-A0T6	HS6ST3	SNP	Missense_Mutation	13	97485222	C	T	19	85
BRCA	TCGA-A2-A0T6	AHNAK2	SNP	Missense_Mutation	14	105421045	A	C	6	46
BRCA	TCGA-A2-A0T6	CDAN1	SNP	Missense_Mutation	15	43029240	A	C	6	83
BRCA	TCGA-A2-A0T6	SMAD3	SNP	Missense_Mutation	15	67479838	C	T	27	100
BRCA	TCGA-A2-A0T6	CSPG4	SNP	Missense_Mutation	15	75982208	T	G	59	56
BRCA	TCGA-A2-A0T6	FURIN	SNP	Missense_Mutation	15	91419714	T	G	59	90
BRCA	TCGA-A2-A0T6	SRCAP	SNP	Silent	16	30736382	A	C	6	84
BRCA	TCGA-A2-A0T6	ABCC12	SNP	Missense_Mutation	16	48155732	A	C	6	61
BRCA	TCGA-A2-A0T6	CDH1	INS	Frame_Shift_Ins	16	68867233	-	TGAT	16	90
BRCA	TCGA-A2-A0T6	GAN	SNP	Missense_Mutation	16	81397481	C	A	30	83
BRCA	TCGA-A2-A0T6	SPAG5	SNP	Splice_site	17	26913109	T	A	54	73
BRCA	TCGA-A2-A0T6	ERBB2	SNP	Missense_Mutation	17	37879658	G	A	39	98
BRCA	TCGA-A2-A0T6	ERBB2	DNP	Missense_Mutation	17	37880219	TT	AG	60	78
BRCA	TCGA-A2-A0T6	LOC653653	SNP	Silent	17	58179880	G	A	41	47
BRCA	TCGA-A2-A0T6	ANGPTL6	SNP	Missense_Mutation	19	10205446	T	G	59	63
BRCA	TCGA-A2-A0T6	TMEM205	SNP	Missense_Mutation	19	11453680	A	C	6	45
BRCA	TCGA-A2-A0T6	PIP5K1C	SNP	Missense_Mutation	19	3633481	T	G	59	67
BRCA	TCGA-A2-A0T6	LOC400696	SNP	Missense_Mutation	19	40172131	C	A	17	40
BRCA	TCGA-A2-A0T6	FOSB	SNP	Missense_Mutation	19	45973980	A	C	6	74
BRCA	TCGA-A2-A0T6	TPRX1	SNP	Missense_Mutation	19	48305694	A	G	11	29
BRCA	TCGA-A2-A0T6	PRR12	SNP	Missense_Mutation	19	50096688	A	C	6	83
BRCA	TCGA-A2-A0T6	IRF3	SNP	Missense_Mutation	19	50165501	A	C	6	72
BRCA	TCGA-A2-A0T6	ZNF324	SNP	Missense_Mutation	19	58983303	G	T	40	52
BRCA	TCGA-A2-A0T6	XIRP2	SNP	Silent	2	168104724	C	T	29	70
BRCA	TCGA-A2-A0T6	ZSWIM2	SNP	Missense_Mutation	2	187713647	T	G	59	44
BRCA	TCGA-A2-A0T6	ASAP2	SNP	Missense_Mutation	2	9517076	G	A	40	97
BRCA	TCGA-A2-A0T6	SLC4A11	SNP	Missense_Mutation	20	3214645	T	G	59	89
BRCA	TCGA-A2-A0T6	HS6ST2	SNP	Missense_Mutation	23	131762942	T	C	64	68
BRCA	TCGA-A2-A0T6	SHROOM4	SNP	Silent	23	50377414	A	C	6	47
BRCA	TCGA-A2-A0T6	PDIA5	SNP	Missense_Mutation	3	122842988	A	C	6	84
BRCA	TCGA-A2-A0T6	MFI2	SNP	Silent	3	196736580	G	A	39	4
BRCA	TCGA-A2-A0T6	VILL	SNP	Silent	3	38039036	T	G	59	38
BRCA	TCGA-A2-A0T6	LAMB2	SNP	Silent	3	49159431	A	C	6	40
BRCA	TCGA-A2-A0T6	POC1A	SNP	Missense_Mutation	3	52183914	T	G	59	57
BRCA	TCGA-A2-A0T6	PLA2G12A	SNP	Missense_Mutation	4	110650902	A	C	6	51
BRCA	TCGA-A2-A0T6	ARSJ	SNP	Silent	4	114899946	T	G	59	44
BRCA	TCGA-A2-A0T6	GEMIN5	SNP	Missense_Mutation	5	154317530	C	T	31	69
BRCA	TCGA-A2-A0T6	RAI14	SNP	Missense_Mutation	5	34823772	A	T	8	56
BRCA	TCGA-A2-A0T6	MED23	SNP	Nonsense_Mutation	6	131912472	G	A	48	100
BRCA	TCGA-A2-A0T6	FNDC1	SNP	Missense_Mutation	6	159650900	A	C	6	63
BRCA	TCGA-A2-A0T6	ZSCAN12	SNP	Missense_Mutation	6	28360727	C	T	28	53
BRCA	TCGA-A2-A0T6	TUBB2B	SNP	Missense_Mutation	6	3227744	A	C	6	76
BRCA	TCGA-A2-A0T6	FTSJD2	SNP	Missense_Mutation	6	37418099	G	A	37	76
BRCA	TCGA-A2-A0T6	TBCC	SNP	Missense_Mutation	6	42713328	C	A	20	57
BRCA	TCGA-A2-A0T6	CPSF1	SNP	Missense_Mutation	8	145621651	T	G	59	72
BRCA	TCGA-A2-A0T6	CPSF1	SNP	Silent	8	145623023	A	C	6	42
BRCA	TCGA-A2-A0T6	RP1	SNP	Silent	8	55534763	C	T	30	54
BRCA	TCGA-A2-A0T6	PPP2R4	DEL	Frame_Shift_Del	9	131891338	CT	-	24	53
BRCA	TCGA-A2-A0T6	PPP2R4	DEL	Frame_Shift_Del	9	131891344	GTTT	-	44	44
BRCA	TCGA-A2-A0T6	KCNT1	SNP	Silent	9	138676624	C	T	27	48
BRCA	TCGA-A2-A0T7	RBM15	DEL	Frame_Shift_Del	1	110883275	CGGCTTT	-	19	53
BRCA	TCGA-A2-A0T7	IARS2	SNP	Silent	1	220269535	C	T	19	52
BRCA	TCGA-A2-A0T7	FMN2	SNP	Missense_Mutation	1	240492411	G	C	34	59
BRCA	TCGA-A2-A0T7	GBP6	SNP	Missense_Mutation	1	89844123	C	A	18	39
BRCA	TCGA-A2-A0T7	ANKRD2	SNP	Nonsense_Mutation	10	99337563	C	T	23	65
BRCA	TCGA-A2-A0T7	ATM	SNP	Nonsense_Mutation	11	108236203	C	T	23	73
BRCA	TCGA-A2-A0T7	RIN1	SNP	Missense_Mutation	11	66103561	G	A	39	73
BRCA	TCGA-A2-A0T7	LOC100288778	SNP	Silent	12	88930	C	T	21	48
BRCA	TCGA-A2-A0T7	CEP128	INS	Frame_Shift_Ins	14	81223281	-	C	10	52
BRCA	TCGA-A2-A0T7	LRRK1	SNP	Silent	15	101565085	G	A	39	31
BRCA	TCGA-A2-A0T7	GOLGA6L1	SNP	Missense_Mutation	15	22743097	G	C	35	51
BRCA	TCGA-A2-A0T7	ATPBD4	SNP	Missense_Mutation	15	35814394	G	A	38	80
BRCA	TCGA-A2-A0T7	GLIS2	SNP	Silent	16	4387381	C	T	23	25
BRCA	TCGA-A2-A0T7	ZNF207	SNP	Missense_Mutation	17	30696435	C	G	21	84
BRCA	TCGA-A2-A0T7	VPS4B	SNP	Missense_Mutation	18	61071018	C	T	19	100
BRCA	TCGA-A2-A0T7	ZNF548	SNP	Silent	19	57910903	G	A	39	41
BRCA	TCGA-A2-A0T7	CXorf65	SNP	Missense_Mutation	23	70324242	A	G	16	58
BRCA	TCGA-A2-A0T7	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-A2-A0T7	PIK3CA	SNP	Missense_Mutation	3	178952074	G	A	45	100
BRCA	TCGA-A2-A0T7	PTPN23	SNP	Silent	3	47451454	C	T	22	57
BRCA	TCGA-A2-A0T7	COL7A1	SNP	Missense_Mutation	3	48629346	A	G	8	80
BRCA	TCGA-A2-A0T7	NEK1	SNP	Missense_Mutation	4	170506525	C	A	27	100
BRCA	TCGA-A2-A0T7	CD164	INS	In_Frame_Ins	6	109703447	-	GCCGAG	27	55
BRCA	TCGA-A2-A0T7	SYNE1	SNP	Missense_Mutation	6	152768733	T	C	56	55
BRCA	TCGA-A2-A0T7	KPNA7	SNP	Splice_site	7	98775688	G	A	38	67
BRCA	TCGA-A2-A0YC	MYOM3	SNP	Silent	1	24409111	G	A	39	37
BRCA	TCGA-A2-A0YC	FAAH	SNP	Missense_Mutation	1	46872015	T	C	59	91
BRCA	TCGA-A2-A0YC	MACROD1	SNP	Missense_Mutation	11	63767227	G	A	47	75
BRCA	TCGA-A2-A0YC	OR4F6	SNP	Missense_Mutation	15	102346617	G	T	44	56
BRCA	TCGA-A2-A0YC	GREM1	SNP	Missense_Mutation	15	33023223	G	C	38	87
BRCA	TCGA-A2-A0YC	NCOR1	INS	Frame_Shift_Ins	17	15984026	-	AGGC	13	89
BRCA	TCGA-A2-A0YC	ZNF90	DEL	Frame_Shift_Del	19	20228851	ATAAG	-	8	56
BRCA	TCGA-A2-A0YC	CKAP2L	SNP	Missense_Mutation	2	113514535	G	T	35	54
BRCA	TCGA-A2-A0YC	MYO18B	SNP	Missense_Mutation	22	26291174	T	A	54	68
BRCA	TCGA-A2-A0YC	MN1	SNP	Missense_Mutation	22	28195033	G	A	39	92
BRCA	TCGA-A2-A0YC	TNRC6B	SNP	Missense_Mutation	22	40661511	G	T	44	73
BRCA	TCGA-A2-A0YC	NKAP	SNP	Silent	23	119077497	C	T	19	44
BRCA	TCGA-A2-A0YC	FGF13	SNP	Missense_Mutation	23	137793117	G	T	39	65
BRCA	TCGA-A2-A0YC	PPARG	SNP	Missense_Mutation	3	12447485	C	G	24	85
BRCA	TCGA-A2-A0YC	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A2-A0YC	C4orf29	SNP	Missense_Mutation	4	128951784	G	C	35	96
BRCA	TCGA-A2-A0YC	ANKRD32	SNP	Missense_Mutation	5	94027917	C	T	29	71
BRCA	TCGA-A2-A0YC	ABP1	SNP	Silent	7	150554560	G	T	46	50
BRCA	TCGA-A2-A0YC	ANGPT1	SNP	Splice_site	8	108297075	C	A	18	100
BRCA	TCGA-A2-A0YC	MATN2	SNP	Missense_Mutation	8	98900392	G	A	37	74
BRCA	TCGA-A2-A0YD	C1orf127	SNP	Silent	1	11017751	C	T	29	53
BRCA	TCGA-A2-A0YD	TXNIP	SNP	Silent	1	145439000	T	C	56	52
BRCA	TCGA-A2-A0YD	CELA2B	SNP	Missense_Mutation	1	15808198	C	T	23	44
BRCA	TCGA-A2-A0YD	F11R	SNP	Missense_Mutation	1	160970527	G	C	45	55
BRCA	TCGA-A2-A0YD	ALDH9A1	SNP	Silent	1	165667703	G	A	37	43
BRCA	TCGA-A2-A0YD	PLXNA2	SNP	Missense_Mutation	1	208255805	C	T	17	99
BRCA	TCGA-A2-A0YD	G0S2	SNP	Silent	1	209849155	G	A	45	65
BRCA	TCGA-A2-A0YD	ITPKB	SNP	Missense_Mutation	1	226836376	C	T	27	100
BRCA	TCGA-A2-A0YD	C1QB	SNP	Missense_Mutation	1	22987403	G	A	43	98
BRCA	TCGA-A2-A0YD	FUBP1	SNP	Missense_Mutation	1	78444657	G	T	33	74
BRCA	TCGA-A2-A0YD	NOLC1	SNP	Missense_Mutation	10	103920079	G	C	33	71
BRCA	TCGA-A2-A0YD	MINPP1	DEL	Frame_Shift_Del	10	89311854	T	-	56	51
BRCA	TCGA-A2-A0YD	MUC5B	SNP	Silent	11	1254322	G	A	45	51
BRCA	TCGA-A2-A0YD	SPTY2D1	SNP	Silent	11	18636609	G	A	47	51
BRCA	TCGA-A2-A0YD	NAV2	DEL	Frame_Shift_Del	11	19967967	C	-	27	57
BRCA	TCGA-A2-A0YD	PTDSS2	SNP	Missense_Mutation	11	489482	C	T	31	69
BRCA	TCGA-A2-A0YD	OR52N5	SNP	Silent	11	5799613	G	A	47	50
BRCA	TCGA-A2-A0YD	CD5	SNP	Missense_Mutation	11	60885726	G	A	47	33
BRCA	TCGA-A2-A0YD	TAS2R30	DEL	Frame_Shift_Del	12	11286524	A	-	5	63
BRCA	TCGA-A2-A0YD	RIMBP2	SNP	Silent	12	130892283	G	A	40	53
BRCA	TCGA-A2-A0YD	STAC3	SNP	Missense_Mutation	12	57638000	G	A	37	44
BRCA	TCGA-A2-A0YD	ERCC5	SNP	Missense_Mutation	13	103514694	G	A	37	62
BRCA	TCGA-A2-A0YD	ZDHHC20	SNP	Silent	13	21955625	G	A	48	56
BRCA	TCGA-A2-A0YD	CTSG	SNP	Silent	14	25044494	C	T	29	51
BRCA	TCGA-A2-A0YD	ACTN1	SNP	Silent	14	69387787	G	A	40	43
BRCA	TCGA-A2-A0YD	CATSPER2	DEL	Frame_Shift_Del	15	43925010	A	-	5	51
BRCA	TCGA-A2-A0YD	GLCE	DEL	Frame_Shift_Del	15	69561032	A	-	5	54
BRCA	TCGA-A2-A0YD	AKAP13	SNP	Missense_Mutation	15	86198828	G	A	45	78
BRCA	TCGA-A2-A0YD	PKD1	SNP	Nonsense_Mutation	16	2159446	G	A	45	55
BRCA	TCGA-A2-A0YD	PPP4C	SNP	Missense_Mutation	16	30094768	G	C	33	71
BRCA	TCGA-A2-A0YD	ABCC11	SNP	Missense_Mutation	16	48209200	G	C	45	81
BRCA	TCGA-A2-A0YD	CDH1	DEL	Frame_Shift_Del	16	68846043	C	-	30	45
BRCA	TCGA-A2-A0YD	HYDIN	SNP	Missense_Mutation	16	70891628	T	C	60	62
BRCA	TCGA-A2-A0YD	TRAPPC2L	SNP	Splice_Site	16	88926159	G	A	40	97
BRCA	TCGA-A2-A0YD	MYH1	SNP	Silent	17	10408307	A	G	4	58
BRCA	TCGA-A2-A0YD	TMEM104	SNP	Missense_Mutation	17	72786402	G	A	37	87
BRCA	TCGA-A2-A0YD	NPC1	SNP	Missense_Mutation	18	21114508	C	T	19	100
BRCA	TCGA-A2-A0YD	OR7A5	DEL	Frame_Shift_Del	19	14938475	A	-	9	47
BRCA	TCGA-A2-A0YD	CAD	SNP	Missense_Mutation	2	27465222	G	A	41	96
BRCA	TCGA-A2-A0YD	CDKL4	SNP	Missense_Mutation	2	39417556	G	A	45	92
BRCA	TCGA-A2-A0YD	ANKRD53	SNP	Silent	2	71211878	G	A	38	40
BRCA	TCGA-A2-A0YD	UBOX5	SNP	Missense_Mutation	20	3096074	C	T	30	83
BRCA	TCGA-A2-A0YD	CTNNBL1	SNP	Missense_Mutation	20	36361374	C	T	31	60
BRCA	TCGA-A2-A0YD	ZNFX1	SNP	Silent	20	47882678	G	A	33	70
BRCA	TCGA-A2-A0YD	URB1	DEL	Frame_Shift_Del	21	33744886	G	-	35	62
BRCA	TCGA-A2-A0YD	TRMT2A	SNP	Missense_Mutation	22	20102144	C	T	30	93
BRCA	TCGA-A2-A0YD	GRIA3	SNP	Missense_Mutation	23	122551281	C	G	20	98
BRCA	TCGA-A2-A0YD	MAGEC3	SNP	Missense_Mutation	23	140969318	C	G	29	49
BRCA	TCGA-A2-A0YD	MXRA5	SNP	Missense_Mutation	23	3242309	C	T	22	56
BRCA	TCGA-A2-A0YD	FAM120C	SNP	Missense_Mutation	23	54143207	C	G	32	90
BRCA	TCGA-A2-A0YD	CSRNP1	SNP	Silent	3	39185751	G	A	37	47
BRCA	TCGA-A2-A0YD	UBA6	DEL	Frame_Shift_Del	4	68529634	T	-	56	54
BRCA	TCGA-A2-A0YD	CYFIP2	DEL	Frame_Shift_Del	5	156817668	AAGA	-	13	91
BRCA	TCGA-A2-A0YD	MAP3K1	INS	Frame_Shift_Ins	5	56178672	-	A	49	49
BRCA	TCGA-A2-A0YD	SAMD3	DEL	Frame_Shift_Del	6	130497064	T	-	52	66
BRCA	TCGA-A2-A0YD	CALN1	SNP	Silent	7	71868340	C	T	28	59
BRCA	TCGA-A2-A0YD	DBC1	SNP	Silent	9	121929944	G	A	38	47
BRCA	TCGA-A2-A0YD	NUP214	DEL	Frame_Shift_Del	9	134015982	A	-	5	51
BRCA	TCGA-A2-A0YD	KIAA1984	SNP	Missense_Mutation	9	139699835	G	A	33	57
BRCA	TCGA-A2-A0YD	KIAA1984	SNP	Missense_Mutation	9	139700996	G	C	33	61
BRCA	TCGA-A2-A0YD	DENND4C	DEL	Frame_Shift_Del	9	19361904	A	-	13	87
BRCA	TCGA-A2-A0YD	FAM205A	SNP	Missense_Mutation	9	34726876	C	T	29	61
BRCA	TCGA-A2-A0YD	RORB	SNP	Silent	9	77300402	C	T	29	59
BRCA	TCGA-A2-A0YF	TPR	SNP	Missense_Mutation	1	186304588	C	G	27	96
BRCA	TCGA-A2-A0YF	ECHDC2	INS	Frame_Shift_Ins	1	53370727	-	C	38	53
BRCA	TCGA-A2-A0YF	SORCS1	SNP	Silent	10	108427518	C	T	23	27
BRCA	TCGA-A2-A0YF	TMEM218	SNP	Silent	11	124967604	G	A	41	53
BRCA	TCGA-A2-A0YF	BAIAP3	SNP	Missense_Mutation	16	1397942	T	C	56	86
BRCA	TCGA-A2-A0YF	RBBP6	SNP	Silent	16	24567190	C	T	30	52
BRCA	TCGA-A2-A0YF	CTCF	INS	Splice_Site	16	67645853	-	TAC	35	100
BRCA	TCGA-A2-A0YF	EPX	SNP	Missense_Mutation	17	56271379	G	A	37	55
BRCA	TCGA-A2-A0YF	TIMM21	DEL	Frame_Shift_Del	18	71816295	TG	-	55	44
BRCA	TCGA-A2-A0YF	ZNF627	SNP	Missense_Mutation	19	11727643	G	T	36	48
BRCA	TCGA-A2-A0YF	ZNF486	DEL	Frame_Shift_Del	19	20308876	AA	-	13	52
BRCA	TCGA-A2-A0YF	LOC100288342	SNP	Missense_Mutation	2	15731877	G	T	42	52
BRCA	TCGA-A2-A0YF	FAM117B	SNP	Silent	2	203630190	C	A	30	54
BRCA	TCGA-A2-A0YF	CYP27A1	SNP	Missense_Mutation	2	219647024	C	T	26	50
BRCA	TCGA-A2-A0YF	REG1A	SNP	Silent	2	79350284	A	G	4	45
BRCA	TCGA-A2-A0YF	RUNX1	INS	Splice_Site	21	36171595	-	A	61	66
BRCA	TCGA-A2-A0YF	CYTH4	SNP	Missense_Mutation	22	37707034	C	T	23	61
BRCA	TCGA-A2-A0YF	CXorf69	SNP	Silent	23	134125278	C	T	29	55
BRCA	TCGA-A2-A0YF	LOC100291814	SNP	Missense_Mutation	23	511729	C	T	18	36
BRCA	TCGA-A2-A0YF	HDAC8	SNP	Missense_Mutation	23	71571588	A	T	12	72
BRCA	TCGA-A2-A0YF	GPR160	SNP	Missense_Mutation	3	169802155	T	A	64	45
BRCA	TCGA-A2-A0YF	FAM43A	INS	In_Frame_Ins	3	194408411	-	CGGCAGAGGGAGATC	46	51
BRCA	TCGA-A2-A0YF	PDE12	SNP	Silent	3	57543003	T	C	56	48
BRCA	TCGA-A2-A0YF	OR5K4	SNP	Silent	3	98073612	T	C	49	51
BRCA	TCGA-A2-A0YF	MAP3K1	DEL	In_Frame_Del	5	56181812	GTT	-	36	65
BRCA	TCGA-A2-A0YF	RIOK2	SNP	Missense_Mutation	5	96506986	T	C	51	87
BRCA	TCGA-A2-A0YF	TAB2	SNP	Silent	6	149699405	T	C	49	56
BRCA	TCGA-A2-A0YF	CYP21A2	SNP	Missense_Mutation	6	32006951	C	T	23	66
BRCA	TCGA-A2-A0YF	IMPG1	SNP	Missense_Mutation	6	76640790	G	A	38	62
BRCA	TCGA-A2-A0YF	CUX1	INS	In_Frame_Ins	7	101845133	-	GGCAGCGGT	35	49
BRCA	TCGA-A2-A0YF	CALD1	SNP	Missense_Mutation	7	134645312	C	A	32	90
BRCA	TCGA-A2-A0YF	CDK5RAP2	SNP	Silent	9	123239714	T	A	51	54
BRCA	TCGA-A2-A0YG	PTCHD2	SNP	Silent	1	11591050	C	T	23	39
BRCA	TCGA-A2-A0YG	CROCC	SNP	Silent	1	17274957	T	C	55	24
BRCA	TCGA-A2-A0YG	TEX35	SNP	Missense_Mutation	1	178490385	A	G	2	56
BRCA	TCGA-A2-A0YG	ABL2	SNP	Silent	1	179079445	T	A	55	51
BRCA	TCGA-A2-A0YG	DIEXF	SNP	Splice_site	1	210016796	G	A	44	78
BRCA	TCGA-A2-A0YG	CYP2C19	SNP	Silent	10	96535205	G	A	38	33
BRCA	TCGA-A2-A0YG	FBXO3	SNP	Missense_Mutation	11	33795959	C	T	30	75
BRCA	TCGA-A2-A0YG	NAALADL1	SNP	Missense_Mutation	11	64820974	G	A	34	70
BRCA	TCGA-A2-A0YG	KDM2B	SNP	Missense_Mutation	12	121880585	G	A	39	63
BRCA	TCGA-A2-A0YG	VPS37B	SNP	Missense_Mutation	12	123355506	G	C	40	54
BRCA	TCGA-A2-A0YG	ZNF268	DEL	In_Frame_Del	12	133780735	ACT	-	6	53
BRCA	TCGA-A2-A0YG	METTL7A	SNP	Silent	12	51318953	T	G	55	30
BRCA	TCGA-A2-A0YG	MBD6	SNP	Nonsense_Mutation	12	57922185	C	T	23	75
BRCA	TCGA-A2-A0YG	ARHGEF25	SNP	Missense_Mutation	12	58008164	C	T	28	97
BRCA	TCGA-A2-A0YG	CEP290	SNP	Missense_Mutation	12	88481688	G	A	37	92
BRCA	TCGA-A2-A0YG	NALCN	SNP	Missense_Mutation	13	101726980	C	T	19	99
BRCA	TCGA-A2-A0YG	GATM	SNP	Missense_Mutation	15	45661631	T	A	62	86
BRCA	TCGA-A2-A0YG	TRIP4	SNP	Missense_Mutation	15	64717756	G	A	45	94
BRCA	TCGA-A2-A0YG	RPP25	SNP	Missense_Mutation	15	75248395	G	A	46	67
BRCA	TCGA-A2-A0YG	SIN3A	SNP	Missense_Mutation	15	75684981	T	C	51	91
BRCA	TCGA-A2-A0YG	ZCCHC14	SNP	Silent	16	87452476	A	G	14	35
BRCA	TCGA-A2-A0YG	ZNF469	SNP	Missense_Mutation	16	88505654	G	A	37	69
BRCA	TCGA-A2-A0YG	TP53	SNP	Splice_Site	17	7579311	C	A	18	89
BRCA	TCGA-A2-A0YG	ZNF91	SNP	Missense_Mutation	19	23545146	C	G	17	65
BRCA	TCGA-A2-A0YG	ANKRD27	SNP	Silent	19	33095253	G	A	37	45
BRCA	TCGA-A2-A0YG	ZNF585A	SNP	Missense_Mutation	19	37643072	G	A	44	88
BRCA	TCGA-A2-A0YG	BIRC8	SNP	Missense_Mutation	19	53793146	G	A	48	37
BRCA	TCGA-A2-A0YG	PAX8	SNP	Silent	2	113994287	C	T	27	32
BRCA	TCGA-A2-A0YG	PTH2R	SNP	Missense_Mutation	2	209307155	G	T	42	56
BRCA	TCGA-A2-A0YG	SP110	SNP	Missense_Mutation	2	231033848	G	A	33	50
BRCA	TCGA-A2-A0YG	SP110	SNP	Missense_Mutation	2	231077653	G	T	43	71
BRCA	TCGA-A2-A0YG	THADA	SNP	Missense_Mutation	2	43805695	A	C	1	82
BRCA	TCGA-A2-A0YG	DIDO1	SNP	Missense_Mutation	20	61512792	C	T	27	84
BRCA	TCGA-A2-A0YG	CYP2D7P1	INS	Frame_Shift_Ins	22	42538514	-	C	54	43
BRCA	TCGA-A2-A0YG	ATP2B3	SNP	Missense_Mutation	23	152827663	G	A	46	94
BRCA	TCGA-A2-A0YG	MUC4	SNP	Missense_Mutation	3	195516064	C	T	31	45
BRCA	TCGA-A2-A0YG	BMPR1B	SNP	Missense_Mutation	4	96035920	C	T	26	75
BRCA	TCGA-A2-A0YG	PCDHGC5	SNP	Silent	5	140871075	G	A	38	30
BRCA	TCGA-A2-A0YG	PDE6A	SNP	Silent	5	149310662	G	A	35	65
BRCA	TCGA-A2-A0YG	PPWD1	SNP	Missense_Mutation	5	64865548	G	A	40	100
BRCA	TCGA-A2-A0YG	CMYA5	SNP	Silent	5	79033448	T	C	52	46
BRCA	TCGA-A2-A0YG	VCAN	SNP	Splice_Site	5	82815167	G	C	34	80
BRCA	TCGA-A2-A0YG	VCAN	SNP	Missense_Mutation	5	82817148	A	G	12	66
BRCA	TCGA-A2-A0YG	DSE	SNP	Missense_Mutation	6	116720421	C	T	20	85
BRCA	TCGA-A2-A0YG	TNFAIP3	SNP	Missense_Mutation	6	138198386	G	T	46	97
BRCA	TCGA-A2-A0YG	NUP153	SNP	Missense_Mutation	6	17688750	C	T	32	67
BRCA	TCGA-A2-A0YG	RELN	SNP	Missense_Mutation	7	103234235	A	C	9	75
BRCA	TCGA-A2-A0YG	STRA8	SNP	Missense_Mutation	7	134925368	G	A	39	57
BRCA	TCGA-A2-A0YG	NACAD	SNP	Silent	7	45120522	G	T	39	48
BRCA	TCGA-A2-A0YG	BAZ1B	SNP	Nonsense_Mutation	7	72892482	G	A	46	97
BRCA	TCGA-A2-A0YG	C8orf86	SNP	Missense_Mutation	8	38385938	C	T	32	73
BRCA	TCGA-A2-A0YG	ZFHX4	SNP	Missense_Mutation	8	77764150	T	A	64	58
BRCA	TCGA-A2-A0YG	POP1	SNP	Silent	8	99146755	G	A	46	54
BRCA	TCGA-A2-A0YG	DBC1	SNP	Missense_Mutation	9	121930072	G	T	35	98
BRCA	TCGA-A2-A0YG	VCP	SNP	Silent	9	35057429	C	T	30	61
BRCA	TCGA-A2-A0YG	TLE4	SNP	Silent	9	82227582	C	T	29	70
BRCA	TCGA-A2-A0YH	HNRNPCL1	SNP	Missense_Mutation	1	12907682	C	T	31	56
BRCA	TCGA-A2-A0YH	PBX1	SNP	Missense_Mutation	1	164815893	C	A	29	80
BRCA	TCGA-A2-A0YH	CR1	SNP	Missense_Mutation	1	207760857	C	G	32	68
BRCA	TCGA-A2-A0YH	RHCE	SNP	Silent	1	25688942	A	C	6	41
BRCA	TCGA-A2-A0YH	ABCC2	SNP	Splice_site	10	101567986	G	C	35	87
BRCA	TCGA-A2-A0YH	PLEKHA1	SNP	Missense_Mutation	10	124189401	G	C	33	59
BRCA	TCGA-A2-A0YH	BTAF1	SNP	Missense_Mutation	10	93768685	C	G	32	75
BRCA	TCGA-A2-A0YH	SORL1	SNP	Silent	11	121425982	C	T	29	88
BRCA	TCGA-A2-A0YH	OR5T2	SNP	Silent	11	56000599	A	T	3	59
BRCA	TCGA-A2-A0YH	NR4A1	SNP	Missense_Mutation	12	52451198	G	A	48	94
BRCA	TCGA-A2-A0YH	GNB3	SNP	Missense_Mutation	12	6952186	C	T	19	100
BRCA	TCGA-A2-A0YH	SLITRK5	SNP	Missense_Mutation	13	88329051	G	C	37	95
BRCA	TCGA-A2-A0YH	PSMA3	SNP	Missense_Mutation	14	58724656	G	C	33	93
BRCA	TCGA-A2-A0YH	TJP1	SNP	Silent	15	30001020	T	C	51	37
BRCA	TCGA-A2-A0YH	ATXN2L	SNP	Silent	16	28844517	G	A	33	72
BRCA	TCGA-A2-A0YH	TRPV2	SNP	Silent	17	16335539	C	G	29	54
BRCA	TCGA-A2-A0YH	SUZ12	SNP	Missense_Mutation	17	30315462	G	A	33	98
BRCA	TCGA-A2-A0YH	TP53	SNP	Missense_Mutation	17	7577105	G	A	35	82
BRCA	TCGA-A2-A0YH	ZNF532	DEL	Frame_Shift_Del	18	56587811	G	-	35	60
BRCA	TCGA-A2-A0YH	DOT1L	SNP	Splice_Site	19	2211749	G	T	33	93
BRCA	TCGA-A2-A0YH	PSG1	SNP	Silent	19	43376163	G	A	36	51
BRCA	TCGA-A2-A0YH	SCN9A	DEL	Frame_Shift_Del	2	167149874	G	-	47	100
BRCA	TCGA-A2-A0YH	TTN	SNP	Missense_Mutation	2	179445267	C	T	32	100
BRCA	TCGA-A2-A0YH	C2orf62	SNP	Missense_Mutation	2	219232206	G	A	41	78
BRCA	TCGA-A2-A0YH	MTA3	SNP	Silent	2	42871362	C	T	17	60
BRCA	TCGA-A2-A0YH	FSHR	SNP	Nonsense_Mutation	2	49295407	G	A	37	74
BRCA	TCGA-A2-A0YH	GPR75	SNP	Silent	2	54081234	G	C	33	49
BRCA	TCGA-A2-A0YH	PYGB	DEL	Frame_Shift_Del	20	25257355	G	-	47	93
BRCA	TCGA-A2-A0YH	CDC25B	SNP	Missense_Mutation	20	3783790	C	G	31	49
BRCA	TCGA-A2-A0YH	LPIN3	SNP	Missense_Mutation	20	39974484	C	T	19	84
BRCA	TCGA-A2-A0YH	USP25	SNP	Missense_Mutation	21	17177479	C	G	32	83
BRCA	TCGA-A2-A0YH	CLTCL1	SNP	Missense_Mutation	22	19220950	C	A	32	73
BRCA	TCGA-A2-A0YH	RTN4R	SNP	Missense_Mutation	22	20230142	C	T	29	78
BRCA	TCGA-A2-A0YH	TBC1D8B	SNP	Missense_Mutation	23	106066621	C	T	26	93
BRCA	TCGA-A2-A0YH	FLNA	DEL	Frame_Shift_Del	23	153580297	G	-	39	74
BRCA	TCGA-A2-A0YH	VAMP7	SNP	Silent	23	155130211	C	T	22	53
BRCA	TCGA-A2-A0YH	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-A2-A0YH	POLR2H	SNP	Missense_Mutation	3	184082777	G	A	45	84
BRCA	TCGA-A2-A0YH	PTPRG	SNP	Missense_Mutation	3	61975361	C	G	30	98
BRCA	TCGA-A2-A0YH	PDZRN3	SNP	Missense_Mutation	3	73453303	C	T	32	100
BRCA	TCGA-A2-A0YH	NFKB1	SNP	Missense_Mutation	4	103522129	C	T	32	64
BRCA	TCGA-A2-A0YH	C4orf21	SNP	Nonsense_Mutation	4	113468473	C	A	30	87
BRCA	TCGA-A2-A0YH	CCNA2	SNP	Missense_Mutation	4	122743651	G	A	38	43
BRCA	TCGA-A2-A0YH	RXFP1	SNP	Missense_Mutation	4	159547979	G	A	45	79
BRCA	TCGA-A2-A0YH	STAP1	SNP	Missense_Mutation	4	68459065	G	A	45	55
BRCA	TCGA-A2-A0YH	WDFY3	SNP	Silent	4	85617213	C	T	24	100
BRCA	TCGA-A2-A0YH	PCDHGC3	SNP	Missense_Mutation	5	140855927	G	A	41	72
BRCA	TCGA-A2-A0YH	SYNE1	SNP	Missense_Mutation	6	152563452	G	T	45	54
BRCA	TCGA-A2-A0YH	TMEM242	SNP	Splice_site	6	157713934	C	G	29	67
BRCA	TCGA-A2-A0YH	SENP6	SNP	Missense_Mutation	6	76385620	C	G	32	68
BRCA	TCGA-A2-A0YH	ZCWPW1	SNP	Splice_Site	7	100014811	C	T	21	70
BRCA	TCGA-A2-A0YH	SEPT14	SNP	Missense_Mutation	7	55910784	C	G	29	89
BRCA	TCGA-A2-A0YH	COX19	SNP	Missense_Mutation	7	966263	C	T	30	50
BRCA	TCGA-A2-A0YH	MTSS1	SNP	Missense_Mutation	8	125575147	G	C	41	78
BRCA	TCGA-A2-A0YH	STAU2	SNP	Missense_Mutation	8	74526082	C	T	27	79
BRCA	TCGA-A2-A0YH	ZFHX4	SNP	Missense_Mutation	8	77616868	C	T	32	85
BRCA	TCGA-A2-A0YH	ZFHX4	SNP	Missense_Mutation	8	77776717	T	A	49	74
BRCA	TCGA-A2-A0YH	FAM75A2	SNP	Nonsense_Mutation	9	39887042	C	A	31	37
BRCA	TCGA-A2-A0YH	KDM4C	SNP	Silent	9	6887970	A	T	5	45
BRCA	TCGA-A2-A0YI	SPEN	DEL	Frame_Shift_Del	1	16258660	CA	-	29	51
BRCA	TCGA-A2-A0YI	CCDC34	DEL	In_Frame_Del	11	27384449	TCATCCACGTCTTCCTCA	-	62	47
BRCA	TCGA-A2-A0YI	CLIP1	SNP	Missense_Mutation	12	122826098	C	G	32	60
BRCA	TCGA-A2-A0YI	MAP2K5	SNP	Splice_Site	15	67873162	G	C	44	99
BRCA	TCGA-A2-A0YI	MEFV	SNP	Silent	16	3306365	G	T	38	52
BRCA	TCGA-A2-A0YI	SIPA1L3	SNP	Missense_Mutation	19	38655323	C	T	30	50
BRCA	TCGA-A2-A0YI	SCN9A	SNP	Silent	2	167099093	C	T	30	51
BRCA	TCGA-A2-A0YI	ZNFX1	SNP	Missense_Mutation	20	47881273	G	T	35	95
BRCA	TCGA-A2-A0YI	TRPC5	SNP	Missense_Mutation	23	111155993	G	T	48	64
BRCA	TCGA-A2-A0YI	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-A2-A0YI	RASGEF1C	SNP	Missense_Mutation	5	179564989	C	T	31	52
BRCA	TCGA-A2-A0YI	THSD7A	SNP	Silent	7	11509516	C	T	19	27
BRCA	TCGA-A2-A0YI	CDK5RAP2	SNP	Missense_Mutation	9	123210362	G	A	39	54
BRCA	TCGA-A2-A0YJ	CELSR2	SNP	Missense_Mutation	1	109794101	C	T	18	56
BRCA	TCGA-A2-A0YJ	TCHHL1	SNP	Missense_Mutation	1	152058008	T	A	55	68
BRCA	TCGA-A2-A0YJ	NDUFS2	SNP	Missense_Mutation	1	161183954	G	A	33	88
BRCA	TCGA-A2-A0YJ	ARHGEF10L	SNP	Missense_Mutation	1	17958870	G	T	40	94
BRCA	TCGA-A2-A0YJ	DNAH14	SNP	Silent	1	225266935	G	A	47	52
BRCA	TCGA-A2-A0YJ	PTCHD3	SNP	Missense_Mutation	10	27687828	A	C	7	70
BRCA	TCGA-A2-A0YJ	RRP12	SNP	Missense_Mutation	10	99133604	C	T	31	72
BRCA	TCGA-A2-A0YJ	MMP13	SNP	Silent	11	102824991	T	A	51	50
BRCA	TCGA-A2-A0YJ	DSCAML1	SNP	Missense_Mutation	11	117376409	A	G	11	77
BRCA	TCGA-A2-A0YJ	MLL	SNP	Missense_Mutation	11	118375750	A	C	3	90
BRCA	TCGA-A2-A0YJ	RPUSD4	SNP	Silent	11	126073535	G	C	43	48
BRCA	TCGA-A2-A0YJ	OR52N2	SNP	Missense_Mutation	11	5842404	C	G	26	63
BRCA	TCGA-A2-A0YJ	FLRT1	SNP	Silent	11	63884894	C	T	27	39
BRCA	TCGA-A2-A0YJ	NARS2	SNP	Missense_Mutation	11	78154716	C	T	27	55
BRCA	TCGA-A2-A0YJ	UHRF1BP1L	SNP	Missense_Mutation	12	100451829	G	C	36	59
BRCA	TCGA-A2-A0YJ	TCTN2	SNP	Missense_Mutation	12	124191572	G	A	45	88
BRCA	TCGA-A2-A0YJ	LRRK2	SNP	Silent	12	40745469	C	T	28	51
BRCA	TCGA-A2-A0YJ	FAM155A	SNP	Missense_Mutation	13	108518036	G	T	36	56
BRCA	TCGA-A2-A0YJ	DYNC1H1	SNP	Missense_Mutation	14	102514950	A	G	9	78
BRCA	TCGA-A2-A0YJ	HEATR5A	SNP	Splice_site	14	31763097	G	A	37	96
BRCA	TCGA-A2-A0YJ	HSPA2	SNP	Missense_Mutation	14	65007620	G	A	46	100
BRCA	TCGA-A2-A0YJ	VASH1	SNP	Splice_site	14	77244414	G	T	39	94
BRCA	TCGA-A2-A0YJ	IVD	SNP	Missense_Mutation	15	40698066	C	T	27	47
BRCA	TCGA-A2-A0YJ	SNX33	SNP	Missense_Mutation	15	75949390	G	A	46	95
BRCA	TCGA-A2-A0YJ	UNC119	SNP	Missense_Mutation	17	26875691	T	C	63	70
BRCA	TCGA-A2-A0YJ	SUZ12	SNP	Missense_Mutation	17	30267315	G	C	33	80
BRCA	TCGA-A2-A0YJ	SHPK	SNP	Silent	17	3524661	G	A	39	29
BRCA	TCGA-A2-A0YJ	TP53	SNP	Nonsense_Mutation	17	7574003	G	A	39	57
BRCA	TCGA-A2-A0YJ	ARHGEF15	SNP	Missense_Mutation	17	8219162	T	A	62	71
BRCA	TCGA-A2-A0YJ	APCDD1	SNP	Missense_Mutation	18	10471922	G	A	39	96
BRCA	TCGA-A2-A0YJ	NAPG	SNP	Missense_Mutation	18	10530817	C	G	32	97
BRCA	TCGA-A2-A0YJ	LOXHD1	SNP	Missense_Mutation	18	44140430	C	T	19	70
BRCA	TCGA-A2-A0YJ		SNP	Silent	18	44774949	G	A	40	51
BRCA	TCGA-A2-A0YJ	FAM69C	SNP	Missense_Mutation	18	72109212	G	A	38	96
BRCA	TCGA-A2-A0YJ	CLEC17A	SNP	Silent	19	14705309	C	T	22	27
BRCA	TCGA-A2-A0YJ	ZNF430	SNP	Nonsense_Mutation	19	21240799	C	A	29	68
BRCA	TCGA-A2-A0YJ	USF2	SNP	Missense_Mutation	19	35769686	G	T	33	65
BRCA	TCGA-A2-A0YJ	FCGBP	SNP	Silent	19	40408807	G	A	40	38
BRCA	TCGA-A2-A0YJ	ZNF524	SNP	Silent	19	56113589	G	C	43	50
BRCA	TCGA-A2-A0YJ	NLRP5	SNP	Silent	19	56569642	G	A	35	58
BRCA	TCGA-A2-A0YJ	FBN3	SNP	Missense_Mutation	19	8174244	C	G	32	47
BRCA	TCGA-A2-A0YJ	GPR17	SNP	Missense_Mutation	2	128408742	C	T	26	70
BRCA	TCGA-A2-A0YJ	DHRS9	SNP	Silent	2	169939876	C	T	27	20
BRCA	TCGA-A2-A0YJ	CCDC141	SNP	Missense_Mutation	2	179702153	C	G	17	64
BRCA	TCGA-A2-A0YJ	RDH14	SNP	Missense_Mutation	2	18736890	T	C	64	77
BRCA	TCGA-A2-A0YJ	DLGAP4	SNP	Missense_Mutation	20	35128703	C	T	23	78
BRCA	TCGA-A2-A0YJ	RAE1	SNP	Missense_Mutation	20	55949798	T	A	63	93
BRCA	TCGA-A2-A0YJ	LAMA5	SNP	Missense_Mutation	20	60885879	C	G	19	47
BRCA	TCGA-A2-A0YJ	ADAMTS5	SNP	Silent	21	28302261	T	C	49	31
BRCA	TCGA-A2-A0YJ	KRTAP10-1	SNP	Missense_Mutation	21	45959988	A	T	11	52
BRCA	TCGA-A2-A0YJ	MYO18B	SNP	Missense_Mutation	22	26164317	A	G	3	41
BRCA	TCGA-A2-A0YJ	EIF4ENIF1	SNP	Missense_Mutation	22	31836773	G	C	35	77
BRCA	TCGA-A2-A0YJ	SFI1	SNP	Silent	22	31942922	G	A	36	53
BRCA	TCGA-A2-A0YJ	COL6A6	SNP	Missense_Mutation	3	130327755	G	C	35	76
BRCA	TCGA-A2-A0YJ	MECOM	SNP	Missense_Mutation	3	168833597	G	T	34	84
BRCA	TCGA-A2-A0YJ	CCR2	SNP	Missense_Mutation	3	46399864	A	T	2	43
BRCA	TCGA-A2-A0YJ	BSN	SNP	Silent	3	49691942	G	A	40	18
BRCA	TCGA-A2-A0YJ	HYAL2	SNP	Missense_Mutation	3	50357070	G	C	42	59
BRCA	TCGA-A2-A0YJ	ERC2	SNP	Missense_Mutation	3	56468977	C	T	19	100
BRCA	TCGA-A2-A0YJ	SNX25	SNP	Missense_Mutation	4	186180136	G	A	40	66
BRCA	TCGA-A2-A0YJ	SORCS2	SNP	Silent	4	7725534	C	T	23	26
BRCA	TCGA-A2-A0YJ	PARP8	SNP	Silent	5	50091197	C	A	24	89
BRCA	TCGA-A2-A0YJ	HEXB	SNP	Missense_Mutation	5	73981270	T	C	63	60
BRCA	TCGA-A2-A0YJ	ARMC2	SNP	Missense_Mutation	6	109190160	G	A	39	67
BRCA	TCGA-A2-A0YJ	FAM184A	SNP	Missense_Mutation	6	119301436	G	C	40	85
BRCA	TCGA-A2-A0YJ	HIST1H2AD	SNP	Missense_Mutation	6	26199312	C	A	26	97
BRCA	TCGA-A2-A0YJ	SNAP91	SNP	Missense_Mutation	6	84366485	T	C	49	91
BRCA	TCGA-A2-A0YJ	ABCF2	INS	Frame_Shift_Ins	7	150916218	-	C	38	78
BRCA	TCGA-A2-A0YJ	MLL3	DEL	In_Frame_Del	7	151873388	TTC	-	60	50
BRCA	TCGA-A2-A0YJ	RBM33	SNP	Missense_Mutation	7	155537935	G	T	33	84
BRCA	TCGA-A2-A0YJ	AGMO	SNP	Splice_Site	7	15584395	A	G	14	76
BRCA	TCGA-A2-A0YJ	MAD1L1	SNP	Missense_Mutation	7	1997278	G	A	38	50
BRCA	TCGA-A2-A0YJ	ZNF727	SNP	Missense_Mutation	7	63537782	C	A	19	40
BRCA	TCGA-A2-A0YJ	ERV3-1	SNP	Missense_Mutation	7	64452362	C	G	27	52
BRCA	TCGA-A2-A0YJ	MAGI2	SNP	Missense_Mutation	7	77762343	C	G	32	75
BRCA	TCGA-A2-A0YJ	PPP1R9A	SNP	Missense_Mutation	7	94750069	C	T	25	99
BRCA	TCGA-A2-A0YJ	ZSCAN21	SNP	Missense_Mutation	7	99654891	C	G	20	69
BRCA	TCGA-A2-A0YJ	TAF1L	SNP	Nonsense_Mutation	9	32634818	G	A	37	58
BRCA	TCGA-A2-A0YJ	UBQLN1	DEL	Frame_Shift_Del	9	86292621	CCTGAGTTGTTAAAAGCATACCTCCTACT	-	26	39
BRCA	TCGA-A2-A0YK	COL11A1	SNP	Missense_Mutation	1	103412488	C	T	28	100
BRCA	TCGA-A2-A0YK	NTNG1	SNP	Missense_Mutation	1	107961246	G	C	45	91
BRCA	TCGA-A2-A0YK	WDR47	SNP	Missense_Mutation	1	109554133	C	A	29	97
BRCA	TCGA-A2-A0YK	GNAT2	SNP	Silent	1	110148667	G	A	37	53
BRCA	TCGA-A2-A0YK	WARS2	SNP	Nonsense_Mutation	1	119683237	C	A	29	61
BRCA	TCGA-A2-A0YK	SNX27	SNP	Missense_Mutation	1	151641007	G	T	34	93
BRCA	TCGA-A2-A0YK	SHE	SNP	Silent	1	154471712	G	A	45	52
BRCA	TCGA-A2-A0YK	SCAMP3	SNP	Silent	1	155231934	C	T	32	52
BRCA	TCGA-A2-A0YK	RIT1	SNP	Silent	1	155880559	C	T	32	55
BRCA	TCGA-A2-A0YK	IQGAP3	SNP	Missense_Mutation	1	156500030	G	A	45	81
BRCA	TCGA-A2-A0YK	SLC25A34	SNP	Silent	1	16063212	C	T	32	58
BRCA	TCGA-A2-A0YK	RCSD1	SNP	Missense_Mutation	1	167663386	G	C	33	53
BRCA	TCGA-A2-A0YK	ZNF648	SNP	Silent	1	182025757	G	A	37	44
BRCA	TCGA-A2-A0YK	C1orf222	SNP	Missense_Mutation	1	1855219	C	G	29	57
BRCA	TCGA-A2-A0YK	PTPN7	SNP	Missense_Mutation	1	202121761	C	T	32	75
BRCA	TCGA-A2-A0YK	SYT2	SNP	Missense_Mutation	1	202568369	C	G	29	86
BRCA	TCGA-A2-A0YK	PROX1	SNP	Missense_Mutation	1	214170738	G	C	35	77
BRCA	TCGA-A2-A0YK	USH2A	SNP	Missense_Mutation	1	216390820	G	C	33	56
BRCA	TCGA-A2-A0YK	SPRTN	SNP	Silent	1	231483548	C	G	30	49
BRCA	TCGA-A2-A0YK	ASAP3	SNP	Silent	1	23768756	G	C	45	48
BRCA	TCGA-A2-A0YK	SMYD3	SNP	Silent	1	246078940	G	A	45	53
BRCA	TCGA-A2-A0YK	SMYD3	SNP	Missense_Mutation	1	246670372	C	T	31	64
BRCA	TCGA-A2-A0YK	PPP1R8	SNP	Missense_Mutation	1	28169711	C	G	29	69
BRCA	TCGA-A2-A0YK	PUM1	SNP	Splice_site	1	31406059	C	G	29	71
BRCA	TCGA-A2-A0YK	ZCCHC17	SNP	Nonsense_Mutation	1	31811816	A	T	15	81
BRCA	TCGA-A2-A0YK	HCRTR1	SNP	Missense_Mutation	1	32092459	C	G	32	52
BRCA	TCGA-A2-A0YK	MAST2	SNP	Missense_Mutation	1	46496719	G	C	33	98
BRCA	TCGA-A2-A0YK	C1orf177	SNP	Missense_Mutation	1	55277548	C	G	29	76
BRCA	TCGA-A2-A0YK	RAVER2	SNP	Silent	1	65255161	C	T	32	56
BRCA	TCGA-A2-A0YK	RPAP2	SNP	Silent	1	92789578	T	G	61	57
BRCA	TCGA-A2-A0YK	FNBP1L	SNP	Missense_Mutation	1	93989865	G	C	41	75
BRCA	TCGA-A2-A0YK	ARHGAP29	SNP	Nonsense_Mutation	1	94650459	G	C	45	93
BRCA	TCGA-A2-A0YK	ECHDC3	SNP	Silent	10	11789450	G	C	45	51
BRCA	TCGA-A2-A0YK	DCLRE1C	SNP	Missense_Mutation	10	14951176	C	G	32	49
BRCA	TCGA-A2-A0YK	BMI1	SNP	Missense_Mutation	10	22616543	G	C	33	96
BRCA	TCGA-A2-A0YK	ANKRD26	SNP	Missense_Mutation	10	27342293	C	G	32	50
BRCA	TCGA-A2-A0YK	ZNF438	SNP	Missense_Mutation	10	31134453	C	T	31	69
BRCA	TCGA-A2-A0YK	VSTM4	SNP	Missense_Mutation	10	50294048	C	G	29	75
BRCA	TCGA-A2-A0YK	AKR1C2	SNP	Missense_Mutation	10	5038048	G	C	45	83
BRCA	TCGA-A2-A0YK	AIFM2	SNP	Missense_Mutation	10	71874694	G	C	33	72
BRCA	TCGA-A2-A0YK	PPA1	SNP	Missense_Mutation	10	71969403	C	T	32	98
BRCA	TCGA-A2-A0YK	DLG5	SNP	Missense_Mutation	10	79589260	C	T	31	84
BRCA	TCGA-A2-A0YK	PAPSS2	SNP	Silent	10	89474611	G	A	46	56
BRCA	TCGA-A2-A0YK	HECTD2	SNP	Silent	10	93185103	G	A	37	63
BRCA	TCGA-A2-A0YK	ATM	SNP	Silent	11	108200998	G	A	45	74
BRCA	TCGA-A2-A0YK	ATM	SNP	Missense_Mutation	11	108206578	G	A	45	100
BRCA	TCGA-A2-A0YK	SIDT2	SNP	Silent	11	117052583	G	A	33	59
BRCA	TCGA-A2-A0YK	FEZ1	SNP	Missense_Mutation	11	125351488	G	A	45	67
BRCA	TCGA-A2-A0YK	PLEKHA7	SNP	Silent	11	16810673	G	A	45	79
BRCA	TCGA-A2-A0YK	SLC17A6	SNP	Missense_Mutation	11	22397575	A	G	14	81
BRCA	TCGA-A2-A0YK	OSBPL5	SNP	Missense_Mutation	11	3129034	G	A	45	60
BRCA	TCGA-A2-A0YK	CKAP5	SNP	Missense_Mutation	11	46786748	G	C	41	82
BRCA	TCGA-A2-A0YK	MADD	SNP	Silent	11	47300612	G	T	45	76
BRCA	TCGA-A2-A0YK	OR8H1	SNP	Silent	11	56058164	G	A	33	54
BRCA	TCGA-A2-A0YK	CPSF7	SNP	Missense_Mutation	11	61187439	C	T	29	80
BRCA	TCGA-A2-A0YK	AHNAK	SNP	Missense_Mutation	11	62297871	C	G	32	71
BRCA	TCGA-A2-A0YK	AHNAK	SNP	Missense_Mutation	11	62297991	C	T	29	71
BRCA	TCGA-A2-A0YK	SF1	SNP	Missense_Mutation	11	64534715	G	A	35	76
BRCA	TCGA-A2-A0YK	KCNK7	SNP	Missense_Mutation	11	65360593	G	C	45	56
BRCA	TCGA-A2-A0YK	LRFN4	SNP	Missense_Mutation	11	66627266	C	T	31	53
BRCA	TCGA-A2-A0YK	PITPNM1	SNP	Missense_Mutation	11	67265000	G	C	45	60
BRCA	TCGA-A2-A0YK	C11orf30	SNP	Missense_Mutation	11	76255449	G	C	33	56
BRCA	TCGA-A2-A0YK	ST5	SNP	Silent	11	8728716	G	A	45	74
BRCA	TCGA-A2-A0YK	KIAA1731	SNP	Missense_Mutation	11	93457518	C	T	30	65
BRCA	TCGA-A2-A0YK	FAM76B	SNP	Missense_Mutation	11	95521679	C	T	32	96
BRCA	TCGA-A2-A0YK	KDM2B	SNP	Silent	12	121986850	C	T	28	65
BRCA	TCGA-A2-A0YK	CCDC65	SNP	Silent	12	49298848	C	T	29	68
BRCA	TCGA-A2-A0YK	ESPL1	SNP	Missense_Mutation	12	53666536	C	A	32	72
BRCA	TCGA-A2-A0YK	OR9K2	SNP	Missense_Mutation	12	55524054	C	G	29	61
BRCA	TCGA-A2-A0YK	LRRC23	SNP	Missense_Mutation	12	7019087	G	C	41	80
BRCA	TCGA-A2-A0YK	ZDHHC17	SNP	Missense_Mutation	12	77243248	C	G	29	88
BRCA	TCGA-A2-A0YK	PPP1R12A	SNP	Missense_Mutation	12	80190988	C	T	32	93
BRCA	TCGA-A2-A0YK	C12orf55	SNP	Missense_Mutation	12	97093812	T	C	53	44
BRCA	TCGA-A2-A0YK	CCDC168	SNP	Missense_Mutation	13	103385158	C	G	32	49
BRCA	TCGA-A2-A0YK	LOC643677	SNP	Silent	13	103391188	G	A	45	48
BRCA	TCGA-A2-A0YK	LOC643677	SNP	Missense_Mutation	13	103392328	C	G	30	48
BRCA	TCGA-A2-A0YK	ARHGEF7	SNP	Nonsense_Mutation	13	111930018	C	T	29	99
BRCA	TCGA-A2-A0YK	IPO5	SNP	Missense_Mutation	13	98660331	G	C	33	96
BRCA	TCGA-A2-A0YK	MYH6	SNP	Missense_Mutation	14	23855274	C	T	19	82
BRCA	TCGA-A2-A0YK	IRF9	SNP	Missense_Mutation	14	24631447	G	A	45	73
BRCA	TCGA-A2-A0YK	REC8	SNP	Missense_Mutation	14	24642177	C	G	32	75
BRCA	TCGA-A2-A0YK	NEDD8	SNP	Missense_Mutation	14	24687410	G	C	45	52
BRCA	TCGA-A2-A0YK	C14orf37	SNP	Missense_Mutation	14	58604848	G	A	41	57
BRCA	TCGA-A2-A0YK	FAM161B	SNP	Missense_Mutation	14	74409190	C	G	32	61
BRCA	TCGA-A2-A0YK	POMT2	SNP	Splice_Site	14	77751976	C	G	32	100
BRCA	TCGA-A2-A0YK	TSHR	SNP	Missense_Mutation	14	81606069	G	A	41	78
BRCA	TCGA-A2-A0YK	RYR3	SNP	Silent	15	33927951	G	A	37	56
BRCA	TCGA-A2-A0YK	TGM5	SNP	Missense_Mutation	15	43525482	C	A	32	71
BRCA	TCGA-A2-A0YK	UNC13C	SNP	Silent	15	54305910	C	G	29	50
BRCA	TCGA-A2-A0YK	CYP11A1	SNP	Silent	15	74631005	G	A	45	52
BRCA	TCGA-A2-A0YK	CORO7	SNP	Missense_Mutation	16	4415517	G	T	33	81
BRCA	TCGA-A2-A0YK	GPR114	SNP	Silent	16	57601828	G	A	45	56
BRCA	TCGA-A2-A0YK	CDH1	SNP	Nonsense_Mutation	16	68835596	C	T	31	67
BRCA	TCGA-A2-A0YK	NFAT5	SNP	Missense_Mutation	16	69726330	G	C	33	87
BRCA	TCGA-A2-A0YK	ZNF469	SNP	Silent	16	88497199	G	A	43	50
BRCA	TCGA-A2-A0YK	ANKRD11	SNP	Silent	16	89351969	G	A	45	45
BRCA	TCGA-A2-A0YK	SMCR7	SNP	Silent	17	18167940	C	T	31	46
BRCA	TCGA-A2-A0YK	NF1	SNP	Missense_Mutation	17	29546065	G	C	33	96
BRCA	TCGA-A2-A0YK	SLFN5	SNP	Missense_Mutation	17	33592664	G	A	45	50
BRCA	TCGA-A2-A0YK	AP2B1	SNP	Silent	17	33984663	C	T	18	61
BRCA	TCGA-A2-A0YK	KIF2B	SNP	Silent	17	51902101	C	T	31	42
BRCA	TCGA-A2-A0YK	C17orf77	SNP	Missense_Mutation	17	72588661	G	A	41	60
BRCA	TCGA-A2-A0YK	GREB1L	SNP	Missense_Mutation	18	19029545	G	A	33	86
BRCA	TCGA-A2-A0YK	ASXL3	SNP	Missense_Mutation	18	31226305	G	A	33	84
BRCA	TCGA-A2-A0YK	CPLX4	SNP	Missense_Mutation	18	56985530	C	G	32	57
BRCA	TCGA-A2-A0YK	CDH19	SNP	Missense_Mutation	18	64221726	C	T	29	95
BRCA	TCGA-A2-A0YK	GALR1	SNP	Silent	18	74962762	C	G	32	67
BRCA	TCGA-A2-A0YK	CDC37	SNP	Missense_Mutation	19	10505773	T	G	63	81
BRCA	TCGA-A2-A0YK	SLC1A6	SNP	Nonsense_Mutation	19	15082654	G	T	45	58
BRCA	TCGA-A2-A0YK	UNC13A	SNP	Silent	19	17780393	G	A	41	52
BRCA	TCGA-A2-A0YK	CEP89	SNP	Missense_Mutation	19	33422303	G	A	45	33
BRCA	TCGA-A2-A0YK	GGN	SNP	Silent	19	38876804	G	A	45	57
BRCA	TCGA-A2-A0YK	DHX34	SNP	Missense_Mutation	19	47879199	C	T	31	83
BRCA	TCGA-A2-A0YK	NLRP12	SNP	Silent	19	54313212	C	T	29	44
BRCA	TCGA-A2-A0YK	LRRC8E	SNP	Silent	19	7964304	C	T	32	65
BRCA	TCGA-A2-A0YK	MUC16	SNP	Silent	19	9091122	C	G	30	48
BRCA	TCGA-A2-A0YK	MBD5	SNP	Missense_Mutation	2	149226685	G	C	45	100
BRCA	TCGA-A2-A0YK	GORASP2	SNP	Missense_Mutation	2	171807955	G	A	43	100
BRCA	TCGA-A2-A0YK	TTN	SNP	Missense_Mutation	2	179592543	C	G	29	75
BRCA	TCGA-A2-A0YK	MFF	SNP	Missense_Mutation	2	228211994	G	A	45	93
BRCA	TCGA-A2-A0YK	ECEL1	SNP	Missense_Mutation	2	233347817	C	G	29	100
BRCA	TCGA-A2-A0YK	PER2	SNP	Missense_Mutation	2	239181776	C	G	32	73
BRCA	TCGA-A2-A0YK	PRKD3	SNP	Missense_Mutation	2	37516501	C	G	32	94
BRCA	TCGA-A2-A0YK	DYNC2LI1	SNP	Nonsense_Mutation	2	44032338	C	T	29	84
BRCA	TCGA-A2-A0YK	ATRN	SNP	Missense_Mutation	20	3540081	C	T	32	79
BRCA	TCGA-A2-A0YK	R3HDML	SNP	Silent	20	42972038	C	T	29	29
BRCA	TCGA-A2-A0YK	HRH3	SNP	Missense_Mutation	20	60791847	C	T	31	60
BRCA	TCGA-A2-A0YK	YTHDF1	SNP	Nonsense_Mutation	20	61835143	G	C	45	85
BRCA	TCGA-A2-A0YK	PLCB4	SNP	Missense_Mutation	20	9370583	C	G	32	85
BRCA	TCGA-A2-A0YK	CCT8	SNP	Missense_Mutation	21	30434457	G	C	33	83
BRCA	TCGA-A2-A0YK	GRIK1	SNP	Missense_Mutation	21	30925922	C	T	31	72
BRCA	TCGA-A2-A0YK	HUNK	SNP	Missense_Mutation	21	33371214	C	G	32	81
BRCA	TCGA-A2-A0YK	ETS2	SNP	Missense_Mutation	21	40194639	G	C	45	100
BRCA	TCGA-A2-A0YK	TSPEAR	SNP	Missense_Mutation	21	45929254	C	T	32	96
BRCA	TCGA-A2-A0YK	HIRA	SNP	Missense_Mutation	22	19344476	G	C	33	97
BRCA	TCGA-A2-A0YK	SUSD2	SNP	Missense_Mutation	22	24583679	G	C	33	60
BRCA	TCGA-A2-A0YK	TRIOBP	SNP	Silent	22	38131375	C	T	32	44
BRCA	TCGA-A2-A0YK	TTLL1	SNP	Missense_Mutation	22	43464475	G	C	33	65
BRCA	TCGA-A2-A0YK	MID2	SNP	Nonsense_Mutation	23	107169922	C	G	17	57
BRCA	TCGA-A2-A0YK	MSL3	SNP	Missense_Mutation	23	11778559	G	A	45	87
BRCA	TCGA-A2-A0YK	CUL4B	SNP	Missense_Mutation	23	119678470	G	A	45	79
BRCA	TCGA-A2-A0YK	CXorf58	SNP	Missense_Mutation	23	23934361	C	A	29	51
BRCA	TCGA-A2-A0YK	RPGR	SNP	Missense_Mutation	23	38146055	C	T	30	50
BRCA	TCGA-A2-A0YK	DDX3X	SNP	Silent	23	41204737	G	A	33	59
BRCA	TCGA-A2-A0YK	KDM5C	SNP	Silent	23	53225894	C	T	32	70
BRCA	TCGA-A2-A0YK	HDAC8	SNP	Missense_Mutation	23	71715093	G	C	33	75
BRCA	TCGA-A2-A0YK	ARHGAP31	SNP	Silent	3	119101244	C	T	29	60
BRCA	TCGA-A2-A0YK	C3orf20	SNP	Silent	3	14725873	C	T	27	28
BRCA	TCGA-A2-A0YK	CPA3	SNP	Silent	3	148603939	C	A	32	58
BRCA	TCGA-A2-A0YK	FGD5	SNP	Silent	3	14963443	C	T	19	50
BRCA	TCGA-A2-A0YK	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-A2-A0YK	LRRFIP2	SNP	Missense_Mutation	3	37146954	C	G	30	93
BRCA	TCGA-A2-A0YK	ZNF662	SNP	Missense_Mutation	3	42956022	G	A	45	58
BRCA	TCGA-A2-A0YK	SNRK	SNP	Missense_Mutation	3	43384891	G	C	45	100
BRCA	TCGA-A2-A0YK	KIAA1143	SNP	Missense_Mutation	3	44795848	G	T	45	74
BRCA	TCGA-A2-A0YK	QRICH1	SNP	Missense_Mutation	3	49083950	C	T	21	100
BRCA	TCGA-A2-A0YK	CACNA2D2	SNP	Missense_Mutation	3	50413289	C	A	26	93
BRCA	TCGA-A2-A0YK	INTU	SNP	Missense_Mutation	4	128626754	G	C	45	62
BRCA	TCGA-A2-A0YK	HAUS3	SNP	Splice_site	4	2233655	C	G	29	63
BRCA	TCGA-A2-A0YK	RGS12	SNP	Missense_Mutation	4	3344728	C	T	29	74
BRCA	TCGA-A2-A0YK	G3BP2	SNP	Missense_Mutation	4	76570799	C	A	29	95
BRCA	TCGA-A2-A0YK	PAQR3	SNP	Missense_Mutation	4	79856355	C	G	29	76
BRCA	TCGA-A2-A0YK	TMED7-TICAM2	SNP	Missense_Mutation	5	114952043	C	T	32	87
BRCA	TCGA-A2-A0YK	UBE2D2	SNP	Missense_Mutation	5	138994175	C	G	30	71
BRCA	TCGA-A2-A0YK	PCDHB14	SNP	Missense_Mutation	5	140604293	G	C	45	59
BRCA	TCGA-A2-A0YK	PCDHGA10	SNP	Missense_Mutation	5	140793682	G	A	45	100
BRCA	TCGA-A2-A0YK	G3BP1	SNP	Missense_Mutation	5	151179471	G	A	45	95
BRCA	TCGA-A2-A0YK	CDH10	SNP	Missense_Mutation	5	24511615	G	A	45	92
BRCA	TCGA-A2-A0YK	MAP3K1	SNP	Nonsense_Mutation	5	56178257	C	G	29	63
BRCA	TCGA-A2-A0YK	CCDC125	SNP	Nonsense_Mutation	5	68581193	G	A	45	65
BRCA	TCGA-A2-A0YK	HMGCR	SNP	Missense_Mutation	5	74647013	C	G	29	55
BRCA	TCGA-A2-A0YK	AP3B1	SNP	Silent	5	77590302	G	A	37	50
BRCA	TCGA-A2-A0YK	PAPD4	SNP	Silent	5	78919237	C	T	29	56
BRCA	TCGA-A2-A0YK	GPR6	SNP	Missense_Mutation	6	110301388	C	G	32	99
BRCA	TCGA-A2-A0YK	PTPRK	SNP	Nonsense_Mutation	6	128410949	G	A	45	86
BRCA	TCGA-A2-A0YK	CTGF	SNP	Missense_Mutation	6	132271151	C	G	32	100
BRCA	TCGA-A2-A0YK	UTRN	SNP	Missense_Mutation	6	145103087	G	A	45	73
BRCA	TCGA-A2-A0YK	UST	SNP	Missense_Mutation	6	149395130	C	T	29	62
BRCA	TCGA-A2-A0YK	PNLDC1	SNP	Silent	6	160222208	C	A	32	57
BRCA	TCGA-A2-A0YK	KIF13A	SNP	Missense_Mutation	6	17796927	T	C	51	76
BRCA	TCGA-A2-A0YK	ZNF165	SNP	Missense_Mutation	6	28056897	G	C	33	56
BRCA	TCGA-A2-A0YK	TCP11	SNP	Missense_Mutation	6	35086222	G	T	33	72
BRCA	TCGA-A2-A0YK	ABCC10	SNP	Silent	6	43403563	C	G	30	58
BRCA	TCGA-A2-A0YK	MMS22L	SNP	Missense_Mutation	6	97715767	G	A	45	95
BRCA	TCGA-A2-A0YK	ARMC10	SNP	Nonsense_Mutation	7	102738803	C	T	31	66
BRCA	TCGA-A2-A0YK	EPHB6	SNP	Missense_Mutation	7	142564664	G	C	33	75
BRCA	TCGA-A2-A0YK	PEX1	SNP	Missense_Mutation	7	92147080	C	T	30	69
BRCA	TCGA-A2-A0YK	SLC25A13	SNP	Silent	7	95906630	G	A	40	58
BRCA	TCGA-A2-A0YK	ARPC1A	SNP	Silent	7	98951679	G	C	41	49
BRCA	TCGA-A2-A0YK	CYP3A43	SNP	Missense_Mutation	7	99457509	G	C	45	86
BRCA	TCGA-A2-A0YK	COPS6	SNP	Nonsense_Mutation	7	99687264	G	T	41	98
BRCA	TCGA-A2-A0YK	VPS13B	SNP	Silent	8	100729481	G	A	45	47
BRCA	TCGA-A2-A0YK	DENND3	SNP	Missense_Mutation	8	142166000	C	G	30	91
BRCA	TCGA-A2-A0YK	CSMD1	SNP	Missense_Mutation	8	3045463	C	T	30	100
BRCA	TCGA-A2-A0YK	ST18	SNP	Missense_Mutation	8	53038648	C	T	29	97
BRCA	TCGA-A2-A0YK	KCNB2	SNP	Silent	8	73480017	G	A	37	44
BRCA	TCGA-A2-A0YK	LRRCC1	SNP	Missense_Mutation	8	86047157	G	C	33	91
BRCA	TCGA-A2-A0YK	DCAF4L2	SNP	Missense_Mutation	8	88885220	C	T	30	59
BRCA	TCGA-A2-A0YK	TLR4	SNP	Missense_Mutation	9	120476002	C	G	32	47
BRCA	TCGA-A2-A0YK	FRMPD1	SNP	Missense_Mutation	9	37735702	G	A	40	52
BRCA	TCGA-A2-A0YK	GLIS3	SNP	Silent	9	4117903	G	A	48	60
BRCA	TCGA-A2-A0YL	ETNK2	SNP	Missense_Mutation	1	204103702	G	C	33	59
BRCA	TCGA-A2-A0YL	RGS7	SNP	Silent	1	240976995	G	A	40	49
BRCA	TCGA-A2-A0YL	ILK	SNP	Missense_Mutation	11	6631001	G	A	47	58
BRCA	TCGA-A2-A0YL	EIF5	SNP	Missense_Mutation	14	103803097	C	T	29	98
BRCA	TCGA-A2-A0YL	SGSM2	SNP	Missense_Mutation	17	2276709	G	A	41	97
BRCA	TCGA-A2-A0YL	NF1	SNP	Nonsense_Mutation	17	29557890	G	A	43	97
BRCA	TCGA-A2-A0YL	NF1	INS	Frame_Shift_Ins	17	29663859	-	C	61	47
BRCA	TCGA-A2-A0YL	LOXHD1	SNP	Missense_Mutation	18	44229157	C	T	30	97
BRCA	TCGA-A2-A0YL	LMTK3	SNP	Splice_site	19	48989044	G	T	43	68
BRCA	TCGA-A2-A0YL	MAP2	SNP	Nonsense_Mutation	2	210574677	C	G	29	97
BRCA	TCGA-A2-A0YL	TRAPPC10	SNP	Missense_Mutation	21	45513974	G	A	40	59
BRCA	TCGA-A2-A0YL	TRPM2	SNP	Silent	21	45833784	C	T	29	78
BRCA	TCGA-A2-A0YL	CABIN1	SNP	Silent	22	24573575	C	T	22	56
BRCA	TCGA-A2-A0YL	TTLL1	SNP	Missense_Mutation	22	43435850	G	C	45	77
BRCA	TCGA-A2-A0YL	GABRE	SNP	Silent	23	151128423	G	A	33	47
BRCA	TCGA-A2-A0YL	FAM50A	SNP	Silent	23	153674859	C	T	27	30
BRCA	TCGA-A2-A0YL	HSD17B10	SNP	Missense_Mutation	23	53460760	C	T	30	93
BRCA	TCGA-A2-A0YL	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A0YL	MSX2	SNP	Nonsense_Mutation	5	174156269	C	T	29	100
BRCA	TCGA-A2-A0YL	FAM75C1	SNP	Silent	9	90537489	G	T	42	47
BRCA	TCGA-A2-A0YM	KIF1B	SNP	Silent	1	10355754	A	T	15	50
BRCA	TCGA-A2-A0YM	DENND2D	SNP	Silent	1	111742287	T	C	55	38
BRCA	TCGA-A2-A0YM	ZNF687	SNP	Missense_Mutation	1	151261988	A	G	5	76
BRCA	TCGA-A2-A0YM	FLG	SNP	Missense_Mutation	1	152278649	C	G	29	45
BRCA	TCGA-A2-A0YM	SPTA1	SNP	Missense_Mutation	1	158583650	C	T	29	95
BRCA	TCGA-A2-A0YM	OR6K2	SNP	Missense_Mutation	1	158669827	C	A	20	55
BRCA	TCGA-A2-A0YM	HIVEP3	SNP	Missense_Mutation	1	42048715	C	T	23	97
BRCA	TCGA-A2-A0YM	WDR65	SNP	Missense_Mutation	1	43672428	T	C	55	75
BRCA	TCGA-A2-A0YM	NMT2	SNP	Nonsense_Mutation	10	15151734	G	T	48	78
BRCA	TCGA-A2-A0YM	ARMC4	SNP	Missense_Mutation	10	28224074	C	T	19	56
BRCA	TCGA-A2-A0YM	SVIL	SNP	Nonsense_Mutation	10	29813436	G	A	45	99
BRCA	TCGA-A2-A0YM	SDHD	SNP	Silent	11	111958687	G	A	37	48
BRCA	TCGA-A2-A0YM	GRAMD1B	SNP	Silent	11	123479407	G	A	36	77
BRCA	TCGA-A2-A0YM	IGSF22	SNP	Missense_Mutation	11	18733928	C	T	19	48
BRCA	TCGA-A2-A0YM	OR5T3	SNP	Silent	11	56019960	T	C	64	10
BRCA	TCGA-A2-A0YM	CCDC83	SNP	Missense_Mutation	11	85623726	C	T	30	35
BRCA	TCGA-A2-A0YM	TYR	SNP	Silent	11	88911667	T	C	51	57
BRCA	TCGA-A2-A0YM	SRRM4	SNP	Silent	12	119594594	G	A	37	43
BRCA	TCGA-A2-A0YM	OGFOD2	SNP	Missense_Mutation	12	123461289	G	C	39	69
BRCA	TCGA-A2-A0YM	ALG10B	SNP	Missense_Mutation	12	38712083	A	C	8	43
BRCA	TCGA-A2-A0YM	POU6F1	SNP	Missense_Mutation	12	51584232	C	T	27	98
BRCA	TCGA-A2-A0YM	MCF2L	SNP	Missense_Mutation	13	113622966	G	C	41	55
BRCA	TCGA-A2-A0YM	HECTD1	SNP	Splice_site	14	31675003	G	C	40	100
BRCA	TCGA-A2-A0YM	PSTPIP1	SNP	Missense_Mutation	15	77310845	G	A	39	68
BRCA	TCGA-A2-A0YM	TMEM204	SNP	Missense_Mutation	16	1604885	C	T	19	99
BRCA	TCGA-A2-A0YM	CLDN9	SNP	Silent	16	3063852	C	G	22	48
BRCA	TCGA-A2-A0YM	SYCE1L	SNP	Missense_Mutation	16	77240349	T	A	58	50
BRCA	TCGA-A2-A0YM	SHMT1	SNP	Silent	17	18232668	C	G	26	43
BRCA	TCGA-A2-A0YM	TAOK1	SNP	Missense_Mutation	17	27825439	T	G	60	92
BRCA	TCGA-A2-A0YM	ATAD5	SNP	Nonsense_Mutation	17	29196617	C	G	29	93
BRCA	TCGA-A2-A0YM	CD79B	SNP	Missense_Mutation	17	62007688	A	G	9	43
BRCA	TCGA-A2-A0YM	ELP5	SNP	Missense_Mutation	17	7162022	C	G	26	50
BRCA	TCGA-A2-A0YM	HN1	SNP	Missense_Mutation	17	73132265	C	A	18	82
BRCA	TCGA-A2-A0YM	TP53	DEL	Frame_Shift_Del	17	7574030	G	-	39	58
BRCA	TCGA-A2-A0YM	DNAH2	SNP	Missense_Mutation	17	7708622	G	A	39	95
BRCA	TCGA-A2-A0YM	CHD3	SNP	Missense_Mutation	17	7800561	G	A	40	83
BRCA	TCGA-A2-A0YM	UNC13A	SNP	Missense_Mutation	19	17756618	G	A	38	90
BRCA	TCGA-A2-A0YM	NUP62	SNP	Missense_Mutation	19	50411501	C	G	29	67
BRCA	TCGA-A2-A0YM	ZNF426	SNP	Missense_Mutation	19	9639430	A	G	14	54
BRCA	TCGA-A2-A0YM	TUBA3D	SNP	Missense_Mutation	2	132237879	G	A	37	84
BRCA	TCGA-A2-A0YM	DYTN	SNP	Missense_Mutation	2	207557962	G	A	38	41
BRCA	TCGA-A2-A0YM	COL6A3	SNP	Missense_Mutation	2	238245104	G	A	40	57
BRCA	TCGA-A2-A0YM	NLRC4	SNP	Missense_Mutation	2	32476335	C	A	19	75
BRCA	TCGA-A2-A0YM	SRBD1	DEL	Frame_Shift_Del	2	45774701	G	-	39	73
BRCA	TCGA-A2-A0YM	SRBD1	SNP	Silent	2	45774705	G	A	34	49
BRCA	TCGA-A2-A0YM	CTNNA2	SNP	Missense_Mutation	2	80801302	G	A	38	72
BRCA	TCGA-A2-A0YM	TASP1	INS	In_Frame_Ins	20	13610600	-	CCT	34	58
BRCA	TCGA-A2-A0YM	SH3BGR	SNP	Missense_Mutation	21	40834367	G	A	33	100
BRCA	TCGA-A2-A0YM	CACNA1F	SNP	Missense_Mutation	23	49065105	C	T	23	48
BRCA	TCGA-A2-A0YM	MYH15	SNP	Silent	3	108220616	G	C	45	59
BRCA	TCGA-A2-A0YM	C3orf30	SNP	Missense_Mutation	3	118867057	G	T	43	54
BRCA	TCGA-A2-A0YM	C3orf36	SNP	Missense_Mutation	3	133647451	G	C	33	52
BRCA	TCGA-A2-A0YM	PLCL2	SNP	Missense_Mutation	3	17051565	G	C	44	100
BRCA	TCGA-A2-A0YM	ABCF3	SNP	Missense_Mutation	3	183905743	G	C	45	95
BRCA	TCGA-A2-A0YM	TRA2B	SNP	Missense_Mutation	3	185644497	C	T	30	76
BRCA	TCGA-A2-A0YM	SCN11A	SNP	Missense_Mutation	3	38924780	G	T	48	87
BRCA	TCGA-A2-A0YM	GNL3	SNP	Missense_Mutation	3	52726938	C	T	23	96
BRCA	TCGA-A2-A0YM	GLT8D1	SNP	Missense_Mutation	3	52729961	G	A	39	99
BRCA	TCGA-A2-A0YM	NSUN7	SNP	Missense_Mutation	4	40810797	C	G	29	73
BRCA	TCGA-A2-A0YM	SDAD1	SNP	Silent	4	76891502	C	G	17	69
BRCA	TCGA-A2-A0YM	PRKG2	SNP	Nonsense_Mutation	4	82092953	G	A	37	58
BRCA	TCGA-A2-A0YM	HPGDS	SNP	Missense_Mutation	4	95223325	C	A	22	58
BRCA	TCGA-A2-A0YM	PCDHA12	SNP	Silent	5	140256728	C	T	19	43
BRCA	TCGA-A2-A0YM	AP3B1	SNP	Silent	5	77590365	T	A	54	44
BRCA	TCGA-A2-A0YM	HIST1H4L	SNP	Missense_Mutation	6	27841182	C	T	31	82
BRCA	TCGA-A2-A0YM	WDR46	SNP	Missense_Mutation	6	33248585	G	A	42	49
BRCA	TCGA-A2-A0YM	SYNGAP1	SNP	Missense_Mutation	6	33410890	G	A	38	76
BRCA	TCGA-A2-A0YM	PEX6	SNP	Splice_Site	6	42934186	C	T	32	96
BRCA	TCGA-A2-A0YM	KCND2	SNP	Missense_Mutation	7	119915032	G	A	37	100
BRCA	TCGA-A2-A0YM	TNRC18	SNP	Missense_Mutation	7	5396789	C	G	20	57
BRCA	TCGA-A2-A0YM	AKAP9	SNP	Missense_Mutation	7	91729014	C	A	30	55
BRCA	TCGA-A2-A0YM	KIAA0368	SNP	Silent	9	114156470	G	A	45	56
BRCA	TCGA-A2-A0YM	CDK5RAP2	SNP	Missense_Mutation	9	123249710	G	T	45	62
BRCA	TCGA-A2-A0YM	DMRTA1	SNP	Missense_Mutation	9	22451752	T	C	58	58
BRCA	TCGA-A2-A0YT	SLAMF7	SNP	Nonsense_Mutation	1	160718252	C	A	17	56
BRCA	TCGA-A2-A0YT	MRTO4	SNP	Missense_Mutation	1	19584466	G	A	38	59
BRCA	TCGA-A2-A0YT	NID1	SNP	Silent	1	236192956	C	T	26	46
BRCA	TCGA-A2-A0YT	ABCC2	SNP	Silent	10	101591523	C	T	23	47
BRCA	TCGA-A2-A0YT	C10orf79	SNP	Missense_Mutation	10	105942201	C	T	27	61
BRCA	TCGA-A2-A0YT	RGS10	SNP	Missense_Mutation	10	121275051	G	C	44	52
BRCA	TCGA-A2-A0YT	WDFY4	SNP	Silent	10	50165257	C	T	19	43
BRCA	TCGA-A2-A0YT	GUCY1A2	SNP	Nonsense_Mutation	11	106810893	C	A	29	72
BRCA	TCGA-A2-A0YT	BACE1	SNP	Silent	11	117163790	G	A	33	100
BRCA	TCGA-A2-A0YT	BACE1	SNP	Silent	11	117163803	G	A	45	64
BRCA	TCGA-A2-A0YT	BACE1	SNP	Silent	11	117163821	G	A	45	77
BRCA	TCGA-A2-A0YT	BACE1	SNP	Silent	11	117164599	G	A	37	36
BRCA	TCGA-A2-A0YT	TMPRSS4	SNP	Missense_Mutation	11	117988053	G	A	45	77
BRCA	TCGA-A2-A0YT	NUP160	SNP	Missense_Mutation	11	47833684	T	G	55	68
BRCA	TCGA-A2-A0YT	OR5D13	SNP	Missense_Mutation	11	55541605	G	A	37	50
BRCA	TCGA-A2-A0YT	OR5D13	SNP	Silent	11	55541783	G	A	45	45
BRCA	TCGA-A2-A0YT	ZP1	SNP	Silent	11	60637860	C	T	31	30
BRCA	TCGA-A2-A0YT	ZP1	SNP	Silent	11	60640695	C	T	30	66
BRCA	TCGA-A2-A0YT	NPAS4	SNP	Missense_Mutation	11	66189989	G	A	38	90
BRCA	TCGA-A2-A0YT	ANO1	SNP	Missense_Mutation	11	70033901	G	C	41	97
BRCA	TCGA-A2-A0YT	ANO1	SNP	Silent	11	70033915	G	A	33	83
BRCA	TCGA-A2-A0YT	C12orf51	SNP	Missense_Mutation	12	112690356	A	G	9	61
BRCA	TCGA-A2-A0YT	DNAH10	SNP	Missense_Mutation	12	124414242	C	T	19	83
BRCA	TCGA-A2-A0YT	VWF	SNP	Nonsense_Mutation	12	6230460	G	A	39	65
BRCA	TCGA-A2-A0YT	ZFC3H1	SNP	Missense_Mutation	12	72027055	G	C	34	79
BRCA	TCGA-A2-A0YT	STARD13	SNP	Silent	13	33700224	G	A	37	28
BRCA	TCGA-A2-A0YT	VPS36	SNP	Silent	13	52990193	A	G	5	89
BRCA	TCGA-A2-A0YT	LECT1	SNP	Missense_Mutation	13	53298164	C	T	27	51
BRCA	TCGA-A2-A0YT	GPC6	SNP	Missense_Mutation	13	93879855	A	T	14	70
BRCA	TCGA-A2-A0YT	DCT	SNP	Missense_Mutation	13	95131476	A	C	5	72
BRCA	TCGA-A2-A0YT	MAX	SNP	Missense_Mutation	14	65569045	C	T	31	67
BRCA	TCGA-A2-A0YT	GOLGA6L2	INS	Frame_Shift_Ins	15	23685100	-	C	46	47
BRCA	TCGA-A2-A0YT	MYO5C	DEL	Frame_Shift_Del	15	52500831	CTAAATGTTCCTTA	-	32	85
BRCA	TCGA-A2-A0YT	TMC7	SNP	Missense_Mutation	16	19063095	G	A	39	97
BRCA	TCGA-A2-A0YT	MYH8	SNP	Missense_Mutation	17	10310046	C	T	30	99
BRCA	TCGA-A2-A0YT	PLD2	SNP	Missense_Mutation	17	4722079	C	T	31	62
BRCA	TCGA-A2-A0YT	ERN1	SNP	Missense_Mutation	17	62130664	G	A	37	98
BRCA	TCGA-A2-A0YT	TP53	SNP	Missense_Mutation	17	7577517	A	C	12	86
BRCA	TCGA-A2-A0YT	BAHCC1	SNP	Silent	17	79426117	C	T	19	49
BRCA	TCGA-A2-A0YT	NLRP7	SNP	Missense_Mutation	19	55449557	G	A	37	40
BRCA	TCGA-A2-A0YT	NLRP9	SNP	Missense_Mutation	19	56243942	C	A	21	63
BRCA	TCGA-A2-A0YT	OR7G2	SNP	Silent	19	9213395	C	T	27	22
BRCA	TCGA-A2-A0YT	TTN	SNP	Missense_Mutation	2	179452261	C	G	19	100
BRCA	TCGA-A2-A0YT	RAB17	SNP	Missense_Mutation	2	238483706	G	T	33	60
BRCA	TCGA-A2-A0YT	SPTBN1	SNP	Missense_Mutation	2	54753679	C	T	27	71
BRCA	TCGA-A2-A0YT	C20orf132	SNP	Missense_Mutation	20	35788533	C	T	27	52
BRCA	TCGA-A2-A0YT	CECR5	SNP	Missense_Mutation	22	17623996	C	T	27	70
BRCA	TCGA-A2-A0YT	BCL2L13	SNP	Missense_Mutation	22	18185061	G	A	40	64
BRCA	TCGA-A2-A0YT	SELO	SNP	Missense_Mutation	22	50649129	G	T	35	59
BRCA	TCGA-A2-A0YT	RHOXF2	SNP	Nonsense_Mutation	23	119293026	C	A	31	10
BRCA	TCGA-A2-A0YT	GRIA3	SNP	Splice_Site	23	122536950	G	C	36	94
BRCA	TCGA-A2-A0YT	OFD1	SNP	Missense_Mutation	23	13778585	G	A	34	48
BRCA	TCGA-A2-A0YT	MAP7D2	SNP	Missense_Mutation	23	20070998	C	G	31	55
BRCA	TCGA-A2-A0YT	MAGEB16	SNP	Missense_Mutation	23	35820494	C	A	30	41
BRCA	TCGA-A2-A0YT	CASK	SNP	Missense_Mutation	23	41419042	G	A	37	82
BRCA	TCGA-A2-A0YT	MSN	SNP	Missense_Mutation	23	64957138	G	A	45	96
BRCA	TCGA-A2-A0YT	ATP6V1A	SNP	Missense_Mutation	3	113507649	G	C	36	84
BRCA	TCGA-A2-A0YT	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A2-A0YT	ATXN7	SNP	Silent	3	63965739	A	C	8	33
BRCA	TCGA-A2-A0YT	GRM7	SNP	Missense_Mutation	3	7728066	G	C	33	53
BRCA	TCGA-A2-A0YT	INPP4B	SNP	Missense_Mutation	4	143094874	T	G	49	58
BRCA	TCGA-A2-A0YT	GAB1	SNP	Missense_Mutation	4	144380559	T	C	49	90
BRCA	TCGA-A2-A0YT	LPHN3	SNP	Missense_Mutation	4	62801665	C	G	17	95
BRCA	TCGA-A2-A0YT	OR2J1	SNP	Missense_Mutation	6	29069038	G	A	38	57
BRCA	TCGA-A2-A0YT	OR2J2	SNP	Missense_Mutation	6	29141621	T	C	55	52
BRCA	TCGA-A2-A0YT	LOC407835	SNP	Missense_Mutation	7	128767280	C	T	27	58
BRCA	TCGA-A2-A0YT	MLL3	INS	Frame_Shift_Ins	7	151945659	-	T	15	57
BRCA	TCGA-A2-A0YT	GET4	SNP	Missense_Mutation	7	930646	C	T	30	98
BRCA	TCGA-A2-A0YT	SGCZ	SNP	Nonsense_Mutation	8	14412342	G	A	38	63
BRCA	TCGA-A2-A0YT	ODF2	SNP	Missense_Mutation	9	131246313	C	T	31	70
BRCA	TCGA-A2-A0YT	SMARCA2	SNP	Silent	9	2029094	G	T	42	51
BRCA	TCGA-A2-A0YT	ANKRD20A4	SNP	Missense_Mutation	9	69423920	G	A	40	57
BRCA	TCGA-A2-A1FV	GPR61	SNP	Missense_Mutation	1	110086977	G	A	38	58
BRCA	TCGA-A2-A1FV	OR2L3	SNP	Missense_Mutation	1	248224884	A	G	10	53
BRCA	TCGA-A2-A1FV	LEPRE1	SNP	Missense_Mutation	1	43212929	C	G	31	50
BRCA	TCGA-A2-A1FV	LDLRAD1	SNP	Missense_Mutation	1	54479914	G	A	44	53
BRCA	TCGA-A2-A1FV	MCOLN2	SNP	Missense_Mutation	1	85397158	T	G	51	39
BRCA	TCGA-A2-A1FV	LOXL4	SNP	Missense_Mutation	10	100013398	G	T	38	96
BRCA	TCGA-A2-A1FV	HOXC4	SNP	Silent	12	54448950	G	A	38	66
BRCA	TCGA-A2-A1FV	ZFC3H1	SNP	Missense_Mutation	12	72037937	G	T	45	94
BRCA	TCGA-A2-A1FV	RYR3	SNP	Nonsense_Mutation	15	33961576	C	T	29	81
BRCA	TCGA-A2-A1FV	ABCC6	SNP	Missense_Mutation	16	16255417	G	A	34	75
BRCA	TCGA-A2-A1FV	CDH1	INS	Frame_Shift_Ins	16	68842417	-	G	30	85
BRCA	TCGA-A2-A1FV	CCL13	INS	Frame_Shift_Ins	17	32683553	-	C	58	53
BRCA	TCGA-A2-A1FV	SGCA	SNP	Missense_Mutation	17	48248012	A	G	10	79
BRCA	TCGA-A2-A1FV	RAB37	SNP	Missense_Mutation	17	72739280	G	A	38	93
BRCA	TCGA-A2-A1FV	ICAM4	SNP	Missense_Mutation	19	10398280	G	A	40	53
BRCA	TCGA-A2-A1FV	TM6SF2	SNP	Missense_Mutation	19	19379464	G	A	38	45
BRCA	TCGA-A2-A1FV	SSFA2	SNP	Missense_Mutation	2	182765477	T	G	50	65
BRCA	TCGA-A2-A1FV	GIGYF2	SNP	Nonsense_Mutation	2	233655446	C	T	19	99
BRCA	TCGA-A2-A1FV	RAD21L1	SNP	Silent	20	1209137	T	C	52	52
BRCA	TCGA-A2-A1FV	DLGAP4	SNP	Missense_Mutation	20	35060343	C	T	21	100
BRCA	TCGA-A2-A1FV	PHACTR3	SNP	Missense_Mutation	20	58381222	G	C	39	98
BRCA	TCGA-A2-A1FV	SMARCA1	SNP	Silent	23	128657222	C	T	23	56
BRCA	TCGA-A2-A1FV	USP9X	DEL	Frame_Shift_Del	23	40990740	AG	-	3	58
BRCA	TCGA-A2-A1FV	PARP14	SNP	Missense_Mutation	3	122419979	C	G	24	52
BRCA	TCGA-A2-A1FV	SRPRB	SNP	Missense_Mutation	3	133524816	G	A	44	51
BRCA	TCGA-A2-A1FV	KIAA1109	INS	Frame_Shift_Ins	4	123227196	-	A	49	51
BRCA	TCGA-A2-A1FV	GRIA1	SNP	Silent	5	153143997	C	T	22	54
BRCA	TCGA-A2-A1FV	GRIA1	SNP	Silent	5	153175111	C	T	19	99
BRCA	TCGA-A2-A1FV	NUP155	SNP	Splice_site	5	37310654	C	G	24	90
BRCA	TCGA-A2-A1FV	SHPRH	SNP	Nonsense_Mutation	6	146240555	G	A	40	64
BRCA	TCGA-A2-A1FV	UST	SNP	Missense_Mutation	6	149275038	G	A	37	86
BRCA	TCGA-A2-A1FV	TCP10	DEL	Frame_Shift_Del	6	167787875	CT	-	20	48
BRCA	TCGA-A2-A1FV	ARFGEF1	SNP	Missense_Mutation	8	68130367	C	T	29	100
BRCA	TCGA-A2-A1FV	UBE2W	SNP	Missense_Mutation	8	74717957	C	T	31	100
BRCA	TCGA-A2-A1FV	PTPN3	SNP	Missense_Mutation	9	112151535	G	A	40	100
BRCA	TCGA-A2-A1FV	SVEP1	SNP	Missense_Mutation	9	113219551	G	A	41	58
BRCA	TCGA-A2-A1FV	RCL1	SNP	Missense_Mutation	9	4827053	C	T	23	50
BRCA	TCGA-A2-A1FV	TRPM6	SNP	Missense_Mutation	9	77354721	A	G	4	94
BRCA	TCGA-A2-A1FV	RMI1	SNP	Silent	9	86617623	C	T	30	55
BRCA	TCGA-A2-A1FW	ZNF648	SNP	Silent	1	182025787	G	A	38	56
BRCA	TCGA-A2-A1FW	CACNA1S	SNP	Missense_Mutation	1	201009077	C	T	30	54
BRCA	TCGA-A2-A1FW	CACNA1S	SNP	Missense_Mutation	1	201013506	C	T	30	95
BRCA	TCGA-A2-A1FW	SRGAP2	SNP	Silent	1	206611342	C	T	19	51
BRCA	TCGA-A2-A1FW	DISC1	SNP	Silent	1	231885724	G	T	46	53
BRCA	TCGA-A2-A1FW	OR2G2	SNP	Silent	1	247752384	C	T	31	34
BRCA	TCGA-A2-A1FW	CACHD1	SNP	Missense_Mutation	1	65157044	C	T	30	96
BRCA	TCGA-A2-A1FW	SLC2A7	SNP	Missense_Mutation	1	9079361	C	T	25	56
BRCA	TCGA-A2-A1FW	GPRIN2	INS	Frame_Shift_Ins	10	46999606	-	GA	43	36
BRCA	TCGA-A2-A1FW	LDB3	SNP	Missense_Mutation	10	88476372	C	T	18	65
BRCA	TCGA-A2-A1FW	USH1C	SNP	Nonsense_Mutation	11	17545007	C	A	31	93
BRCA	TCGA-A2-A1FW	SART1	SNP	Silent	11	65744012	C	T	25	52
BRCA	TCGA-A2-A1FW	TESC	SNP	Missense_Mutation	12	117494644	C	T	31	90
BRCA	TCGA-A2-A1FW	SLC39A2	DEL	Frame_Shift_Del	14	21467657	CTCA	-	32	51
BRCA	TCGA-A2-A1FW	HECTD1	SNP	Nonsense_Mutation	14	31605749	G	C	44	57
BRCA	TCGA-A2-A1FW	PCNXL4	SNP	Silent	14	60591901	T	G	56	47
BRCA	TCGA-A2-A1FW	SYNE2	SNP	Missense_Mutation	14	64608223	T	G	62	50
BRCA	TCGA-A2-A1FW	FAM71D	SNP	Missense_Mutation	14	67671595	T	G	62	74
BRCA	TCGA-A2-A1FW	CHGA	SNP	Silent	14	93397599	G	A	39	46
BRCA	TCGA-A2-A1FW	DUOX1	SNP	Missense_Mutation	15	45448061	C	A	20	60
BRCA	TCGA-A2-A1FW	CEP152	SNP	Missense_Mutation	15	49044602	G	T	35	63
BRCA	TCGA-A2-A1FW	MYO5A	SNP	Nonsense_Mutation	15	52643662	G	T	45	96
BRCA	TCGA-A2-A1FW	TBC1D21	SNP	Missense_Mutation	15	74177166	G	T	40	65
BRCA	TCGA-A2-A1FW	ABHD2	SNP	Missense_Mutation	15	89659692	A	G	14	58
BRCA	TCGA-A2-A1FW	AMDHD2	SNP	Missense_Mutation	16	2580551	T	A	55	52
BRCA	TCGA-A2-A1FW	DPEP3	SNP	Silent	16	68011676	C	T	23	29
BRCA	TCGA-A2-A1FW	ADAP2	SNP	Missense_Mutation	17	29276342	G	A	40	95
BRCA	TCGA-A2-A1FW	OR1A1	SNP	Missense_Mutation	17	3119269	G	A	42	73
BRCA	TCGA-A2-A1FW	CNTNAP1	SNP	Silent	17	40837254	C	T	31	51
BRCA	TCGA-A2-A1FW	MRC2	SNP	Missense_Mutation	17	60768334	A	G	2	73
BRCA	TCGA-A2-A1FW	ZNF521	SNP	Silent	18	22807567	G	A	38	44
BRCA	TCGA-A2-A1FW	RFX1	SNP	Missense_Mutation	19	14076542	A	C	11	85
BRCA	TCGA-A2-A1FW	F2RL3	SNP	Missense_Mutation	19	17001214	G	A	38	59
BRCA	TCGA-A2-A1FW	JAK3	SNP	Missense_Mutation	19	17937697	C	A	25	89
BRCA	TCGA-A2-A1FW	ZNF43	SNP	Missense_Mutation	19	21991460	C	A	26	72
BRCA	TCGA-A2-A1FW	ZNF507	SNP	Splice_Site	19	32845865	T	C	57	89
BRCA	TCGA-A2-A1FW	MEGF8	SNP	Silent	19	42855839	C	T	30	53
BRCA	TCGA-A2-A1FW	ODF3L2	SNP	Silent	19	463919	C	T	31	39
BRCA	TCGA-A2-A1FW	GLI2	SNP	Missense_Mutation	2	121729565	G	A	38	48
BRCA	TCGA-A2-A1FW	TTN	SNP	Missense_Mutation	2	179632645	C	G	32	57
BRCA	TCGA-A2-A1FW	NCKAP1	SNP	Missense_Mutation	2	183847589	C	A	32	100
BRCA	TCGA-A2-A1FW	CDK5RAP1	SNP	Missense_Mutation	20	31975264	G	A	42	94
BRCA	TCGA-A2-A1FW	TSHZ2	SNP	Missense_Mutation	20	51872726	C	T	19	100
BRCA	TCGA-A2-A1FW	PAK7	SNP	Silent	20	9561437	G	A	40	48
BRCA	TCGA-A2-A1FW	KRTAP6-3	SNP	Missense_Mutation	21	31965011	G	A	47	68
BRCA	TCGA-A2-A1FW	WBP5	SNP	Missense_Mutation	23	102612872	T	G	56	65
BRCA	TCGA-A2-A1FW	TBC1D8B	SNP	Missense_Mutation	23	106096864	T	C	52	84
BRCA	TCGA-A2-A1FW	PIGA	SNP	Missense_Mutation	23	15349901	C	T	28	82
BRCA	TCGA-A2-A1FW	HUWE1	SNP	Missense_Mutation	23	53652126	A	G	16	87
BRCA	TCGA-A2-A1FW	SLC6A1	SNP	Silent	3	11064046	C	T	19	49
BRCA	TCGA-A2-A1FW	CCDC80	SNP	Missense_Mutation	3	112326098	G	A	38	79
BRCA	TCGA-A2-A1FW	NR1D2	SNP	Silent	3	24003871	C	T	26	67
BRCA	TCGA-A2-A1FW	VILL	SNP	Missense_Mutation	3	38047679	C	T	23	50
BRCA	TCGA-A2-A1FW	ADAMTS9	SNP	Missense_Mutation	3	64518862	A	G	11	65
BRCA	TCGA-A2-A1FW	AIMP1	SNP	Missense_Mutation	4	107249280	A	G	16	18
BRCA	TCGA-A2-A1FW	KIAA1109	SNP	Nonsense_Mutation	4	123111228	G	T	45	86
BRCA	TCGA-A2-A1FW	NIPAL1	SNP	Missense_Mutation	4	48038079	G	A	34	51
BRCA	TCGA-A2-A1FW	AQPEP	SNP	Silent	5	115329524	T	A	61	58
BRCA	TCGA-A2-A1FW	SIL1	SNP	Splice_Site	5	138287476	C	G	18	85
BRCA	TCGA-A2-A1FW	SLC45A2	SNP	Missense_Mutation	5	33963829	C	T	25	49
BRCA	TCGA-A2-A1FW	TDRD6	SNP	Missense_Mutation	6	46660616	A	T	16	58
BRCA	TCGA-A2-A1FW	MUC17	SNP	Silent	7	100684336	A	G	5	59
BRCA	TCGA-A2-A1FW	COL1A2	SNP	Silent	7	94034183	T	A	54	56
BRCA	TCGA-A2-A1FW	NUDCD1	SNP	Missense_Mutation	8	110287602	C	G	25	86
BRCA	TCGA-A2-A1FW	ZNF251	SNP	Silent	8	145947416	G	A	40	34
BRCA	TCGA-A2-A1FW	PREX2	SNP	Missense_Mutation	8	69011939	G	A	36	81
BRCA	TCGA-A2-A1FW	TLR4	SNP	Missense_Mutation	9	120474689	G	T	33	77
BRCA	TCGA-A2-A1FX	PIK3C2B	SNP	Missense_Mutation	1	204438798	C	T	30	63
BRCA	TCGA-A2-A1FX	PLD5	SNP	Missense_Mutation	1	242451687	G	T	47	63
BRCA	TCGA-A2-A1FX	ATXN3	SNP	Missense_Mutation	14	92562444	G	A	33	94
BRCA	TCGA-A2-A1FX	RGMA	SNP	Missense_Mutation	15	93588269	C	T	27	39
BRCA	TCGA-A2-A1FX	ZNF629	SNP	Missense_Mutation	16	30793176	T	C	55	54
BRCA	TCGA-A2-A1FX	UNC13D	SNP	Silent	17	73836636	C	T	24	64
BRCA	TCGA-A2-A1FX	C18orf25	INS	Frame_Shift_Ins	18	43833705	-	T	42	84
BRCA	TCGA-A2-A1FX	STXBP2	SNP	Missense_Mutation	19	7712614	C	G	30	92
BRCA	TCGA-A2-A1FX	KRTAP19-2	SNP	Missense_Mutation	21	31859634	A	T	3	54
BRCA	TCGA-A2-A1FX	ERG	SNP	Missense_Mutation	21	39755519	G	T	43	68
BRCA	TCGA-A2-A1FX	KRTAP10-7	SNP	Missense_Mutation	21	46020889	T	A	58	50
BRCA	TCGA-A2-A1FX	NRK	SNP	Missense_Mutation	23	105132399	G	A	39	69
BRCA	TCGA-A2-A1FX	SMARCA1	SNP	Missense_Mutation	23	128631871	A	T	6	55
BRCA	TCGA-A2-A1FX	ZBTB38	SNP	Missense_Mutation	3	141164333	G	A	41	91
BRCA	TCGA-A2-A1FX	PLCH1	SNP	Nonsense_Mutation	3	155232586	C	A	32	97
BRCA	TCGA-A2-A1FX	ACVR2B	SNP	Silent	3	38519699	C	T	31	45
BRCA	TCGA-A2-A1FX	CTNNA1	SNP	Splice_Site	5	138264934	G	T	33	100
BRCA	TCGA-A2-A1FX	ATXN1	SNP	Silent	6	16306707	C	T	23	49
BRCA	TCGA-A2-A1FX	ITPR3	SNP	Missense_Mutation	6	33631568	C	G	26	58
BRCA	TCGA-A2-A1FX	TRRAP	SNP	Silent	7	98527687	C	T	31	96
BRCA	TCGA-A2-A1FZ	OSBPL9	SNP	Missense_Mutation	1	52227617	A	T	8	62
BRCA	TCGA-A2-A1FZ	RBM20	SNP	Missense_Mutation	10	112583260	G	T	45	54
BRCA	TCGA-A2-A1FZ	RHOBTB1	SNP	Missense_Mutation	10	62671216	G	A	38	87
BRCA	TCGA-A2-A1FZ	OR6X1	SNP	Nonsense_Mutation	11	123624554	G	A	40	49
BRCA	TCGA-A2-A1FZ	FLI1	SNP	Splice_Site	11	128628222	G	A	44	96
BRCA	TCGA-A2-A1FZ	NUP107	SNP	Missense_Mutation	12	69135710	T	C	51	61
BRCA	TCGA-A2-A1FZ	FOXA1	INS	Frame_Shift_Ins	14	38060747	-	T	28	63
BRCA	TCGA-A2-A1FZ	FAM179B	SNP	Missense_Mutation	14	45465069	G	T	41	79
BRCA	TCGA-A2-A1FZ	ULK3	SNP	Missense_Mutation	15	75131031	T	C	52	61
BRCA	TCGA-A2-A1FZ	PLD6	SNP	Missense_Mutation	17	17106185	G	A	44	57
BRCA	TCGA-A2-A1FZ	FBXO15	SNP	Nonsense_Mutation	18	71797870	G	C	45	82
BRCA	TCGA-A2-A1FZ	ANKRD12	DEL	Frame_Shift_Del	18	9255050	AA	-	5	51
BRCA	TCGA-A2-A1FZ	TTYH1	SNP	Missense_Mutation	19	54941109	C	G	18	83
BRCA	TCGA-A2-A1FZ	SCN9A	DEL	Frame_Shift_Del	2	167141168	ACAA	-	6	93
BRCA	TCGA-A2-A1FZ	LAMA5	SNP	Silent	20	60937537	G	A	46	56
BRCA	TCGA-A2-A1FZ	VSIG1	SNP	Missense_Mutation	23	107310235	G	T	37	44
BRCA	TCGA-A2-A1FZ	SLC6A14	SNP	Silent	23	115574821	T	C	57	55
BRCA	TCGA-A2-A1FZ	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A1FZ	SEC24A	SNP	Missense_Mutation	5	133996823	G	A	46	52
BRCA	TCGA-A2-A1FZ	ZNF879	SNP	Missense_Mutation	5	178459857	T	A	56	71
BRCA	TCGA-A2-A1FZ	MYB	SNP	Splice_site	6	135511266	T	C	59	93
BRCA	TCGA-A2-A1FZ	DUS4L	SNP	Missense_Mutation	7	107215657	G	T	43	52
BRCA	TCGA-A2-A1FZ	LUC7L2	DEL	Splice_site	7	139083442	ATGT	-	12	90
BRCA	TCGA-A2-A1FZ	MATN2	SNP	Missense_Mutation	8	99039661	A	C	4	46
BRCA	TCGA-A2-A1FZ	EHMT1	SNP	Silent	9	140710464	G	A	40	46
BRCA	TCGA-A2-A1G0	LRRC4C	SNP	Missense_Mutation	11	40137268	G	C	42	100
BRCA	TCGA-A2-A1G0	WSCD2	SNP	Silent	12	108618544	C	T	30	85
BRCA	TCGA-A2-A1G0	GRIN2B	SNP	Missense_Mutation	12	13715969	G	T	46	75
BRCA	TCGA-A2-A1G0	MAP3K12	SNP	Splice_Site	12	53876974	C	T	24	93
BRCA	TCGA-A2-A1G0	PDS5B	DEL	Frame_Shift_Del	13	33247483	TTAAA	-	64	93
BRCA	TCGA-A2-A1G0	ARMC5	DNP	Splice_Site	16	31474092	GG	AT	35	59
BRCA	TCGA-A2-A1G0	MEFV	SNP	Missense_Mutation	16	3293864	A	G	8	56
BRCA	TCGA-A2-A1G0	CDH1	SNP	Missense_Mutation	16	68867353	A	G	4	64
BRCA	TCGA-A2-A1G0	MAP2K4	DEL	Frame_Shift_Del	17	12032516	AC	-	2	90
BRCA	TCGA-A2-A1G0	XIRP2	SNP	Missense_Mutation	2	168104843	C	T	24	97
BRCA	TCGA-A2-A1G0	MYT1L	SNP	Missense_Mutation	2	1842924	C	T	27	100
BRCA	TCGA-A2-A1G0	C2orf16	SNP	Nonsense_Mutation	2	27802528	C	A	29	55
BRCA	TCGA-A2-A1G0	SHANK3	SNP	Missense_Mutation	22	51121781	G	A	40	90
BRCA	TCGA-A2-A1G0	HDX	SNP	Missense_Mutation	23	83730290	T	G	55	89
BRCA	TCGA-A2-A1G0	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-A2-A1G0	EXOSC9	SNP	Missense_Mutation	4	122737961	C	T	18	58
BRCA	TCGA-A2-A1G0	BOD1L1	SNP	Missense_Mutation	4	13601548	C	T	31	79
BRCA	TCGA-A2-A1G0	FAM153B	SNP	Missense_Mutation	5	175540973	C	T	22	49
BRCA	TCGA-A2-A1G0	TNXB	SNP	Missense_Mutation	6	32041597	G	T	41	79
BRCA	TCGA-A2-A1G0	ARL4A	SNP	Missense_Mutation	7	12728294	A	G	11	57
BRCA	TCGA-A2-A1G1	ATPAF1	SNP	Silent	1	47119504	G	A	33	56
BRCA	TCGA-A2-A1G1	SEPHS1	SNP	Silent	10	13378339	C	T	19	44
BRCA	TCGA-A2-A1G1	MCAM	SNP	Missense_Mutation	11	119185262	C	T	23	72
BRCA	TCGA-A2-A1G1	SF3B2	SNP	Missense_Mutation	11	65826508	G	A	42	96
BRCA	TCGA-A2-A1G1	FAM186A	SNP	Missense_Mutation	12	50745739	A	G	11	35
BRCA	TCGA-A2-A1G1	SLC7A8	SNP	Silent	14	23609736	G	T	35	62
BRCA	TCGA-A2-A1G1	CREBBP	SNP	Splice_site	16	3827658	T	C	50	87
BRCA	TCGA-A2-A1G1	CASC3	SNP	Nonsense_Mutation	17	38296950	C	A	29	66
BRCA	TCGA-A2-A1G1	KRT31	SNP	Silent	17	39551243	G	T	45	69
BRCA	TCGA-A2-A1G1	MRPS7	DEL	Frame_Shift_Del	17	73259535	TG	-	55	92
BRCA	TCGA-A2-A1G1	TP53	SNP	Splice_Site	17	7577609	C	T	24	89
BRCA	TCGA-A2-A1G1	MOCOS	SNP	Silent	18	33785062	G	A	34	52
BRCA	TCGA-A2-A1G1	LPPR2	SNP	Missense_Mutation	19	11475316	C	T	23	58
BRCA	TCGA-A2-A1G1	TRIB2	SNP	Missense_Mutation	2	12880637	G	A	43	100
BRCA	TCGA-A2-A1G1	XIRP2	SNP	Missense_Mutation	2	168102346	G	T	48	53
BRCA	TCGA-A2-A1G1	TTN	SNP	Splice_site	2	179469435	C	G	22	72
BRCA	TCGA-A2-A1G1	AOX1	DEL	Splice_site	2	201467067	AAGT	-	1	69
BRCA	TCGA-A2-A1G1	WDR12	DEL	In_Frame_Del	2	203776179	GCGTGTTTGGAGCTGAGCCATG	-	34	56
BRCA	TCGA-A2-A1G1	BTG3	SNP	Missense_Mutation	21	18971026	T	G	51	81
BRCA	TCGA-A2-A1G1	MAGEC1	SNP	Missense_Mutation	23	140993611	T	G	52	51
BRCA	TCGA-A2-A1G1	MXRA5	SNP	Missense_Mutation	23	3242907	C	A	29	39
BRCA	TCGA-A2-A1G1	SLC41A3	SNP	Missense_Mutation	3	125727702	C	T	31	65
BRCA	TCGA-A2-A1G1	ZBTB38	SNP	Silent	3	141161656	A	C	11	38
BRCA	TCGA-A2-A1G1	MUC4	SNP	Missense_Mutation	3	195506990	C	G	29	55
BRCA	TCGA-A2-A1G1	KIAA1239	SNP	Missense_Mutation	4	37446047	C	A	21	99
BRCA	TCGA-A2-A1G1	GABRP	DEL	Frame_Shift_Del	5	170239126	GAGAA	-	37	74
BRCA	TCGA-A2-A1G1	CENPK	SNP	Splice_site	5	64814460	T	A	50	66
BRCA	TCGA-A2-A1G1	TSPAN12	SNP	Missense_Mutation	7	120446741	C	A	20	56
BRCA	TCGA-A2-A1G1	PTPRZ1	SNP	Missense_Mutation	7	121659196	A	G	8	73
BRCA	TCGA-A2-A1G1	FAM86B1	SNP	Missense_Mutation	8	12044262	G	A	39	39
BRCA	TCGA-A2-A1G1	CORO2A	SNP	Missense_Mutation	9	100888910	T	G	59	53
BRCA	TCGA-A2-A1G1	NFIB	SNP	Silent	9	14307139	C	G	17	63
BRCA	TCGA-A2-A1G4	SPATA21	SNP	Silent	1	16730302	G	C	43	51
BRCA	TCGA-A2-A1G4	YBX1	SNP	Missense_Mutation	1	43166508	A	G	4	85
BRCA	TCGA-A2-A1G4	GBP1	SNP	Silent	1	89525988	C	T	23	31
BRCA	TCGA-A2-A1G4	MYOF	SNP	Silent	10	95085598	C	T	28	56
BRCA	TCGA-A2-A1G4	DCDC5	SNP	Silent	11	30903588	A	C	14	48
BRCA	TCGA-A2-A1G4	OR52B4	SNP	Silent	11	4389301	G	A	33	39
BRCA	TCGA-A2-A1G4	HNRNPUL2	SNP	Silent	11	62487502	C	T	32	57
BRCA	TCGA-A2-A1G4	PRDX5	SNP	Missense_Mutation	11	64087239	G	A	45	91
BRCA	TCGA-A2-A1G4	KDM2A	SNP	Nonsense_Mutation	11	66995613	C	T	29	97
BRCA	TCGA-A2-A1G4	AMOTL1	SNP	Missense_Mutation	11	94533105	T	A	55	90
BRCA	TCGA-A2-A1G4	LRP1	SNP	Missense_Mutation	12	57589072	C	T	22	96
BRCA	TCGA-A2-A1G4	CIDEB	INS	Frame_Shift_Ins	14	24775709	-	T	29	60
BRCA	TCGA-A2-A1G4	CIDEB	DNP	Missense_Mutation	14	24775714	GT	CC	36	59
BRCA	TCGA-A2-A1G4	SERPINA12	SNP	Missense_Mutation	14	94964133	A	G	6	52
BRCA	TCGA-A2-A1G4	FAN1	SNP	Missense_Mutation	15	31206233	T	A	60	88
BRCA	TCGA-A2-A1G4	USP8	SNP	Silent	15	50769138	T	C	51	58
BRCA	TCGA-A2-A1G4	MAP2K4	SNP	Missense_Mutation	17	12016616	G	T	36	94
BRCA	TCGA-A2-A1G4	TM6SF2	DNP	Missense_Mutation	19	19375576	GC	AA	38	65
BRCA	TCGA-A2-A1G4	CGB8	SNP	Silent	19	49551573	C	T	27	42
BRCA	TCGA-A2-A1G4	SLC9A4	SNP	Silent	2	103095467	C	T	27	45
BRCA	TCGA-A2-A1G4	ITGA4	SNP	Missense_Mutation	2	182339788	A	G	8	52
BRCA	TCGA-A2-A1G4	BEX4	SNP	Missense_Mutation	23	102471238	G	A	43	48
BRCA	TCGA-A2-A1G4	ATP6AP1	SNP	Missense_Mutation	23	153657488	C	A	30	74
BRCA	TCGA-A2-A1G4	SH3BGRL	SNP	Splice_site	23	80552725	G	A	45	59
BRCA	TCGA-A2-A1G4	COL6A5	DEL	Frame_Shift_Del	3	130159404	CTAT	-	24	49
BRCA	TCGA-A2-A1G4	ETV5	SNP	Missense_Mutation	3	185783693	A	T	8	35
BRCA	TCGA-A2-A1G4	PPARGC1A	SNP	Missense_Mutation	4	23816043	A	T	14	91
BRCA	TCGA-A2-A1G4	S100P	DEL	In_Frame_Del	4	6695772	AGA	-	11	62
BRCA	TCGA-A2-A1G4	SLC22A16	SNP	Missense_Mutation	6	110763635	C	A	18	49
BRCA	TCGA-A2-A1G4	MCM9	SNP	Silent	6	119245057	G	A	35	54
BRCA	TCGA-A2-A1G4	MYO6	SNP	Missense_Mutation	6	76538265	A	T	4	89
BRCA	TCGA-A2-A1G4	IBTK	SNP	Silent	6	82924534	A	G	9	62
BRCA	TCGA-A2-A1G4	ZAN	DEL	Frame_Shift_Del	7	100364159	GTGGT	-	44	52
BRCA	TCGA-A2-A1G4	RXRA	SNP	Missense_Mutation	9	137309085	C	T	23	94
BRCA	TCGA-A2-A1G4	FOXD4L3	SNP	Missense_Mutation	9	70918829	A	T	12	48
BRCA	TCGA-A2-A1G6	PM20D1	SNP	Missense_Mutation	1	205819079	G	C	33	75
BRCA	TCGA-A2-A1G6	KLC3	SNP	Missense_Mutation	19	45849975	G	T	34	62
BRCA	TCGA-A2-A1G6	R3HDML	SNP	Missense_Mutation	20	42965985	T	A	51	88
BRCA	TCGA-A2-A259	PTPRQ	SNP	Missense_Mutation	12	80928679	G	C	37	84
BRCA	TCGA-A2-A259	WDR72	SNP	Nonsense_Mutation	15	54025259	G	A	38	59
BRCA	TCGA-A2-A259	SIN3A	DEL	In_Frame_Del	15	75676715	TATTTTCTGCCAGGTAAA	-	61	70
BRCA	TCGA-A2-A259	ILF3	SNP	Missense_Mutation	19	10781834	A	G	12	58
BRCA	TCGA-A2-A259	CLEC17A	SNP	Splice_site	19	14706127	G	A	39	48
BRCA	TCGA-A2-A259	RPS5	SNP	Missense_Mutation	19	58904526	G	A	37	92
BRCA	TCGA-A2-A259	SLC4A10	SNP	Missense_Mutation	2	162815009	C	T	26	100
BRCA	TCGA-A2-A259	AFF2	SNP	Missense_Mutation	23	148039966	C	T	21	65
BRCA	TCGA-A2-A259	PLXNA3	SNP	Silent	23	153696522	G	T	46	60
BRCA	TCGA-A2-A259	NONO	SNP	Missense_Mutation	23	70511766	G	A	47	97
BRCA	TCGA-A2-A259	OSBPL11	SNP	Missense_Mutation	3	125297815	C	G	28	98
BRCA	TCGA-A2-A259	CEP70	SNP	Missense_Mutation	3	138290122	C	T	32	64
BRCA	TCGA-A2-A259	MAP3K1	SNP	Missense_Mutation	5	56184093	G	C	47	94
BRCA	TCGA-A2-A259	GPR110	SNP	Missense_Mutation	6	46976736	A	C	6	60
BRCA	TCGA-A2-A259	MANEA	INS	Frame_Shift_Ins	6	96034869	-	TATA	48	47
BRCA	TCGA-A2-A259	MLL3	SNP	Nonsense_Mutation	7	152027750	G	A	45	73
BRCA	TCGA-A2-A259	ZHX2	SNP	Silent	8	123964746	G	A	33	70
BRCA	TCGA-A2-A259	VAV2	SNP	Silent	9	136699429	G	A	40	48
BRCA	TCGA-A2-A25A	PEX14	SNP	Silent	1	10596278	G	T	39	44
BRCA	TCGA-A2-A25A	ASH1L	SNP	Missense_Mutation	1	155429604	C	G	32	52
BRCA	TCGA-A2-A25A	SELP	SNP	Missense_Mutation	1	169565174	G	T	47	72
BRCA	TCGA-A2-A25A	ASPM	SNP	Missense_Mutation	1	197099176	C	T	30	97
BRCA	TCGA-A2-A25A	LAMB3	SNP	Missense_Mutation	1	209791254	C	T	29	85
BRCA	TCGA-A2-A25A	MARK1	SNP	Missense_Mutation	1	220825486	G	T	39	91
BRCA	TCGA-A2-A25A	PARP1	SNP	Missense_Mutation	1	226573297	C	T	31	100
BRCA	TCGA-A2-A25A	CDC42BPA	SNP	Missense_Mutation	1	227288919	G	T	44	72
BRCA	TCGA-A2-A25A	HPCAL4	SNP	Missense_Mutation	1	40150207	G	T	38	55
BRCA	TCGA-A2-A25A	ERI3	SNP	Missense_Mutation	1	44750563	G	T	47	72
BRCA	TCGA-A2-A25A	GPX7	SNP	Missense_Mutation	1	53073967	G	T	47	97
BRCA	TCGA-A2-A25A	ABCC2	SNP	Silent	10	101601847	C	G	29	52
BRCA	TCGA-A2-A25A	DNMBP	SNP	Nonsense_Mutation	10	101637038	G	T	45	70
BRCA	TCGA-A2-A25A	C10orf76	SNP	Missense_Mutation	10	103771512	G	T	47	97
BRCA	TCGA-A2-A25A	OGDHL	SNP	Missense_Mutation	10	50954843	G	T	42	100
BRCA	TCGA-A2-A25A	CCAR1	SNP	Missense_Mutation	10	70520826	G	T	36	77
BRCA	TCGA-A2-A25A	CYP26A1	SNP	Missense_Mutation	10	94836960	T	A	55	92
BRCA	TCGA-A2-A25A	MCAM	SNP	Silent	11	119182249	G	T	45	49
BRCA	TCGA-A2-A25A	OR8B3	SNP	Missense_Mutation	11	124266647	T	C	51	51
BRCA	TCGA-A2-A25A	B4GALNT4	SNP	Missense_Mutation	11	380848	G	T	47	95
BRCA	TCGA-A2-A25A	OR8K1	SNP	Missense_Mutation	11	56113597	G	A	43	36
BRCA	TCGA-A2-A25A	DNHD1	SNP	Missense_Mutation	11	6570103	C	T	29	61
BRCA	TCGA-A2-A25A	DNAH10	SNP	Missense_Mutation	12	124298415	G	T	41	100
BRCA	TCGA-A2-A25A	SPRYD3	SNP	Missense_Mutation	12	53461956	G	T	35	59
BRCA	TCGA-A2-A25A	KIF5A	SNP	Missense_Mutation	12	57975311	C	G	32	44
BRCA	TCGA-A2-A25A	ATP2B1	SNP	Missense_Mutation	12	90010583	G	T	35	100
BRCA	TCGA-A2-A25A	MPHOSPH8	SNP	Missense_Mutation	13	20235848	G	T	41	99
BRCA	TCGA-A2-A25A	FREM2	SNP	Missense_Mutation	13	39454659	G	A	38	73
BRCA	TCGA-A2-A25A	EML1	SNP	Missense_Mutation	14	100364613	G	T	36	100
BRCA	TCGA-A2-A25A	PIAS1	SNP	Missense_Mutation	15	68438931	G	T	40	97
BRCA	TCGA-A2-A25A	PIAS1	SNP	Missense_Mutation	15	68438944	G	T	37	97
BRCA	TCGA-A2-A25A	RNF40	SNP	Missense_Mutation	16	30779332	G	T	42	61
BRCA	TCGA-A2-A25A	CDH1	SNP	Missense_Mutation	16	68862107	G	A	39	95
BRCA	TCGA-A2-A25A	USP7	SNP	Silent	16	8988471	G	T	42	55
BRCA	TCGA-A2-A25A	SMYD4	SNP	Silent	17	1703986	G	T	47	49
BRCA	TCGA-A2-A25A	ULK2	SNP	Missense_Mutation	17	19728468	G	T	33	83
BRCA	TCGA-A2-A25A	SUPT6H	SNP	Missense_Mutation	17	27002030	G	T	37	98
BRCA	TCGA-A2-A25A	FLOT2	SNP	Missense_Mutation	17	27208299	C	T	32	100
BRCA	TCGA-A2-A25A	CCL14	SNP	Missense_Mutation	17	34312816	G	T	39	47
BRCA	TCGA-A2-A25A	KPNB1	SNP	Missense_Mutation	17	45750492	G	T	47	51
BRCA	TCGA-A2-A25A	GH2	SNP	Missense_Mutation	17	61957710	G	T	39	72
BRCA	TCGA-A2-A25A	RBBP8	SNP	Missense_Mutation	18	20596862	G	T	43	82
BRCA	TCGA-A2-A25A	OSBPL1A	SNP	Silent	18	21761133	G	T	33	30
BRCA	TCGA-A2-A25A	ZNF791	SNP	Missense_Mutation	19	12738936	G	T	36	54
BRCA	TCGA-A2-A25A	TMEM38A	SNP	Splice_Site	19	16798954	G	T	35	90
BRCA	TCGA-A2-A25A	RAB3A	SNP	Missense_Mutation	19	18309636	G	A	45	96
BRCA	TCGA-A2-A25A	GATAD2A	SNP	Nonsense_Mutation	19	19603408	C	T	19	73
BRCA	TCGA-A2-A25A	TMPRSS9	SNP	Missense_Mutation	19	2415770	C	T	30	61
BRCA	TCGA-A2-A25A	ZNF554	SNP	Missense_Mutation	19	2834252	G	T	34	47
BRCA	TCGA-A2-A25A	MAG	SNP	Missense_Mutation	19	35793545	G	A	33	66
BRCA	TCGA-A2-A25A	DMPK	SNP	Missense_Mutation	19	46283223	C	T	32	51
BRCA	TCGA-A2-A25A	RRM2	SNP	Missense_Mutation	2	10269209	G	A	45	100
BRCA	TCGA-A2-A25A	HDAC4	SNP	Missense_Mutation	2	240016733	G	T	37	38
BRCA	TCGA-A2-A25A	ASXL2	SNP	Missense_Mutation	2	25978922	G	A	45	78
BRCA	TCGA-A2-A25A	WDPCP	SNP	Silent	2	63631316	G	T	35	52
BRCA	TCGA-A2-A25A	NINL	SNP	Silent	20	25498423	G	T	42	49
BRCA	TCGA-A2-A25A	TM9SF4	SNP	Silent	20	30729674	G	T	42	61
BRCA	TCGA-A2-A25A	ZNFX1	SNP	Silent	20	47865238	G	A	38	40
BRCA	TCGA-A2-A25A	SLCO4A1	SNP	Missense_Mutation	20	61297777	G	T	42	94
BRCA	TCGA-A2-A25A	CHEK2	SNP	Missense_Mutation	22	29095912	C	G	32	92
BRCA	TCGA-A2-A25A	POLDIP3	SNP	Silent	22	42992321	G	T	47	57
BRCA	TCGA-A2-A25A	GLRA4	SNP	Missense_Mutation	23	102968564	C	T	26	94
BRCA	TCGA-A2-A25A	AIFM1	SNP	Missense_Mutation	23	129263972	G	C	33	70
BRCA	TCGA-A2-A25A	MED12	SNP	Missense_Mutation	23	70345962	C	G	30	62
BRCA	TCGA-A2-A25A	HMGN5	SNP	Silent	23	80371790	G	T	43	64
BRCA	TCGA-A2-A25A	ARGFX	SNP	Missense_Mutation	3	121305394	G	C	33	57
BRCA	TCGA-A2-A25A	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-A2-A25A	HHATL	SNP	Silent	3	42740389	G	T	34	68
BRCA	TCGA-A2-A25A	DOCK3	SNP	Silent	3	51417596	G	T	47	60
BRCA	TCGA-A2-A25A	TEX264	SNP	Missense_Mutation	3	51718482	G	T	35	47
BRCA	TCGA-A2-A25A	ACTR8	SNP	Missense_Mutation	3	53908306	G	T	47	85
BRCA	TCGA-A2-A25A	MANBA	SNP	Missense_Mutation	4	103578858	G	T	41	99
BRCA	TCGA-A2-A25A	RAPGEF2	SNP	Missense_Mutation	4	160235812	G	T	37	100
BRCA	TCGA-A2-A25A	ADAMTS3	SNP	Missense_Mutation	4	73148964	G	T	33	77
BRCA	TCGA-A2-A25A	SORCS2	SNP	Missense_Mutation	4	7714483	G	T	38	89
BRCA	TCGA-A2-A25A	SPOCK1	SNP	Splice_site	5	136328289	G	T	42	58
BRCA	TCGA-A2-A25A	BRD8	SNP	Missense_Mutation	5	137503631	G	T	34	71
BRCA	TCGA-A2-A25A	PCDHB11	SNP	Missense_Mutation	5	140580938	G	A	40	76
BRCA	TCGA-A2-A25A	PCDH1	SNP	Missense_Mutation	5	141244076	T	C	58	89
BRCA	TCGA-A2-A25A	OSMR	SNP	Missense_Mutation	5	38933388	G	T	33	66
BRCA	TCGA-A2-A25A	CDC40	SNP	Splice_site	6	110534290	G	T	42	84
BRCA	TCGA-A2-A25A	ASF1A	SNP	Missense_Mutation	6	119226836	G	T	41	68
BRCA	TCGA-A2-A25A	PTPRK	SNP	Missense_Mutation	6	128294905	G	T	35	100
BRCA	TCGA-A2-A25A	MAP3K4	SNP	Nonsense_Mutation	6	161470388	G	T	33	99
BRCA	TCGA-A2-A25A	AGPAT4	SNP	Silent	6	161570318	G	A	45	85
BRCA	TCGA-A2-A25A	DCDC2	SNP	Silent	6	24174967	G	T	39	32
BRCA	TCGA-A2-A25A	HCRTR2	SNP	Nonsense_Mutation	6	55147109	C	T	19	53
BRCA	TCGA-A2-A25A	KHDRBS2	SNP	Missense_Mutation	6	62604590	G	T	42	91
BRCA	TCGA-A2-A25A	FHL5	SNP	Missense_Mutation	6	97058632	G	T	36	56
BRCA	TCGA-A2-A25A	OR6B1	SNP	Silent	7	143701740	C	G	24	50
BRCA	TCGA-A2-A25A	WDR67	SNP	Missense_Mutation	8	124154635	G	T	35	50
BRCA	TCGA-A2-A25A	KIAA1967	SNP	Silent	8	22464825	C	G	32	58
BRCA	TCGA-A2-A25A	ZFHX4	SNP	Silent	8	77765961	G	T	43	51
BRCA	TCGA-A2-A25A	TMEM67	SNP	Missense_Mutation	8	94770765	G	T	46	68
BRCA	TCGA-A2-A25A	CDK5RAP2	SNP	Missense_Mutation	9	123171418	G	T	47	51
BRCA	TCGA-A2-A25A	C9orf50	SNP	Missense_Mutation	9	132381848	G	T	42	45
BRCA	TCGA-A2-A25A	C9orf37	SNP	Nonsense_Mutation	9	140510463	C	T	30	50
BRCA	TCGA-A2-A25B	MAN1A2	SNP	Silent	1	118039456	C	T	20	83
BRCA	TCGA-A2-A25B	PRAMEF11	SNP	Missense_Mutation	1	12888424	A	G	5	44
BRCA	TCGA-A2-A25B	TARS2	SNP	Missense_Mutation	1	150469022	C	T	30	98
BRCA	TCGA-A2-A25B	RYR2	SNP	Missense_Mutation	1	237580371	G	A	38	85
BRCA	TCGA-A2-A25B	RPA2	SNP	Missense_Mutation	1	28233517	C	A	24	58
BRCA	TCGA-A2-A25B	HCRTR1	SNP	Silent	1	32089153	G	A	41	51
BRCA	TCGA-A2-A25B	KIAA1217	SNP	Missense_Mutation	10	24833030	G	T	41	97
BRCA	TCGA-A2-A25B	FAM13C	SNP	Missense_Mutation	10	61023859	C	G	19	94
BRCA	TCGA-A2-A25B	GATA3	DEL	Frame_Shift_Del	10	8115852	AT	-	8	77
BRCA	TCGA-A2-A25B	CARD17	SNP	Missense_Mutation	11	104971500	A	T	10	63
BRCA	TCGA-A2-A25B	SORL1	SNP	Silent	11	121458742	G	A	38	11
BRCA	TCGA-A2-A25B	FOLH1	SNP	Splice_Site	11	49170190	C	G	18	84
BRCA	TCGA-A2-A25B	DTX4	SNP	Missense_Mutation	11	58949292	G	A	37	82
BRCA	TCGA-A2-A25B	ODZ4	SNP	Missense_Mutation	11	78381001	A	G	4	90
BRCA	TCGA-A2-A25B	ERC1	SNP	Silent	12	1137553	T	C	52	51
BRCA	TCGA-A2-A25B	TMED2	SNP	Missense_Mutation	12	124074976	G	A	39	100
BRCA	TCGA-A2-A25B	KIAA0528	SNP	Nonsense_Mutation	12	22627752	G	C	45	97
BRCA	TCGA-A2-A25B	MLL2	SNP	Missense_Mutation	12	49444310	G	A	41	59
BRCA	TCGA-A2-A25B	GAPDH	SNP	Missense_Mutation	12	6646882	G	C	44	98
BRCA	TCGA-A2-A25B	FRY	SNP	Silent	13	32863812	C	T	28	88
BRCA	TCGA-A2-A25B	TBC1D4	SNP	Missense_Mutation	13	75936460	C	T	22	48
BRCA	TCGA-A2-A25B	OR4N5	SNP	Silent	14	20612251	C	G	24	54
BRCA	TCGA-A2-A25B	PLA2G4D	SNP	Missense_Mutation	15	42379619	G	T	35	67
BRCA	TCGA-A2-A25B	TMEM87A	SNP	Missense_Mutation	15	42531871	C	T	29	96
BRCA	TCGA-A2-A25B	TMOD3	SNP	Missense_Mutation	15	52181319	G	A	44	74
BRCA	TCGA-A2-A25B	ATP2A1	SNP	Missense_Mutation	16	28899040	G	A	37	98
BRCA	TCGA-A2-A25B	HYDIN	SNP	Missense_Mutation	16	70954761	C	A	22	53
BRCA	TCGA-A2-A25B	PRPF8	SNP	Silent	17	1582137	C	T	17	51
BRCA	TCGA-A2-A25B	C17orf97	SNP	Missense_Mutation	17	263526	G	A	37	41
BRCA	TCGA-A2-A25B	SLFN12L	SNP	Nonsense_Mutation	17	33802086	G	T	36	51
BRCA	TCGA-A2-A25B	ABCA9	SNP	Missense_Mutation	17	66979929	T	C	62	73
BRCA	TCGA-A2-A25B	CHST9	SNP	Missense_Mutation	18	24497140	C	A	28	50
BRCA	TCGA-A2-A25B	KIAA1328	SNP	Silent	18	34646885	A	C	8	48
BRCA	TCGA-A2-A25B	SMAD4	SNP	Missense_Mutation	18	48575132	T	G	53	90
BRCA	TCGA-A2-A25B	DNMT1	SNP	Silent	19	10291057	G	A	47	51
BRCA	TCGA-A2-A25B	DOCK6	SNP	Silent	19	11313275	G	A	33	49
BRCA	TCGA-A2-A25B	PSG2	SNP	Missense_Mutation	19	43585335	G	A	47	55
BRCA	TCGA-A2-A25B	SHISA7	SNP	Missense_Mutation	19	55952073	C	T	31	70
BRCA	TCGA-A2-A25B	ZNF544	SNP	Missense_Mutation	19	58773419	A	G	13	44
BRCA	TCGA-A2-A25B	NPAS2	SNP	Missense_Mutation	2	101594255	G	C	47	69
BRCA	TCGA-A2-A25B	MGAT5	SNP	Silent	2	135206253	C	T	21	58
BRCA	TCGA-A2-A25B	FAP	SNP	Missense_Mutation	2	163083083	A	T	4	61
BRCA	TCGA-A2-A25B	TTN	SNP	Missense_Mutation	2	179408789	C	A	26	89
BRCA	TCGA-A2-A25B	SSFA2	SNP	Missense_Mutation	2	182766619	C	A	17	68
BRCA	TCGA-A2-A25B	DUSP19	SNP	Missense_Mutation	2	183943850	C	A	18	77
BRCA	TCGA-A2-A25B	APOB	SNP	Missense_Mutation	2	21232258	A	C	4	50
BRCA	TCGA-A2-A25B	AGBL5	SNP	Missense_Mutation	2	27275875	G	C	35	95
BRCA	TCGA-A2-A25B	PRKCE	SNP	Splice_Site	2	46313346	G	A	35	100
BRCA	TCGA-A2-A25B	NRK	SNP	Missense_Mutation	23	105168991	C	A	18	46
BRCA	TCGA-A2-A25B	SMARCA1	SNP	Missense_Mutation	23	128641922	G	T	33	99
BRCA	TCGA-A2-A25B	RAB33A	SNP	Missense_Mutation	23	129318289	C	A	19	66
BRCA	TCGA-A2-A25B	FHL1	SNP	Silent	23	135288738	G	A	39	36
BRCA	TCGA-A2-A25B	ATP2B3	SNP	Missense_Mutation	23	152835130	C	A	24	60
BRCA	TCGA-A2-A25B	SLC9C1	SNP	Missense_Mutation	3	111983118	A	T	16	51
BRCA	TCGA-A2-A25B	ARHGAP31	SNP	Missense_Mutation	3	119134300	G	A	38	98
BRCA	TCGA-A2-A25B	KALRN	SNP	Silent	3	124174098	G	A	39	47
BRCA	TCGA-A2-A25B	COL6A6	SNP	Missense_Mutation	3	130380981	C	G	29	73
BRCA	TCGA-A2-A25B	EPHB1	SNP	Silent	3	134884889	C	A	24	48
BRCA	TCGA-A2-A25B	SLC22A14	SNP	Missense_Mutation	3	38347782	T	A	56	65
BRCA	TCGA-A2-A25B	UGDH	SNP	Missense_Mutation	4	39505533	C	T	30	86
BRCA	TCGA-A2-A25B	NUP54	DEL	Frame_Shift_Del	4	77038880	AA	-	5	70
BRCA	TCGA-A2-A25B	DNAH5	SNP	Missense_Mutation	5	13700790	A	T	1	81
BRCA	TCGA-A2-A25B	PCDHGA1	SNP	Missense_Mutation	5	140712271	G	A	37	91
BRCA	TCGA-A2-A25B	RBM27	SNP	Missense_Mutation	5	145651050	C	T	25	80
BRCA	TCGA-A2-A25B	ENPP1	SNP	Missense_Mutation	6	132206110	A	G	16	60
BRCA	TCGA-A2-A25B	HIST1H2BJ	SNP	Missense_Mutation	6	27100352	T	G	51	83
BRCA	TCGA-A2-A25B	ABCA13	SNP	Silent	7	48314636	C	T	31	49
BRCA	TCGA-A2-A25B	CRCP	SNP	Nonsense_Mutation	7	65579837	G	T	37	53
BRCA	TCGA-A2-A25B	ASNS	SNP	Missense_Mutation	7	97481770	G	A	46	61
BRCA	TCGA-A2-A25B	PRSS55	SNP	Silent	8	10383206	A	G	11	34
BRCA	TCGA-A2-A25B	BLK	SNP	Missense_Mutation	8	11412989	G	T	41	95
BRCA	TCGA-A2-A25B	SLC30A8	SNP	Silent	8	118165274	G	C	48	68
BRCA	TCGA-A2-A25B	TG	SNP	Silent	8	133910025	G	A	47	53
BRCA	TCGA-A2-A25B	TG	SNP	Missense_Mutation	8	133953777	G	C	35	60
BRCA	TCGA-A2-A25B	WISP1	SNP	Silent	8	134237778	C	A	26	57
BRCA	TCGA-A2-A25B	PSD3	SNP	Silent	8	18457916	G	T	35	50
BRCA	TCGA-A2-A25B	PMP2	SNP	Missense_Mutation	8	82355662	C	A	18	57
BRCA	TCGA-A2-A25B	RIPK2	SNP	Silent	8	90777697	C	T	32	55
BRCA	TCGA-A2-A25B	PDCL	SNP	Missense_Mutation	9	125588988	G	T	47	55
BRCA	TCGA-A2-A25B	CRAT	SNP	Silent	9	131860611	G	A	44	47
BRCA	TCGA-A2-A25B	GLDC	INS	Frame_Shift_Ins	9	6533047	-	GG	51	29
BRCA	TCGA-A2-A25C	HMCN1	SNP	Splice_Site	1	185962313	G	C	33	99
BRCA	TCGA-A2-A25C	ENAH	SNP	Silent	1	225707102	C	T	26	43
BRCA	TCGA-A2-A25C	OR8A1	SNP	Missense_Mutation	11	124440230	G	A	46	65
BRCA	TCGA-A2-A25C	DAGLA	SNP	Missense_Mutation	11	61511150	G	A	39	93
BRCA	TCGA-A2-A25C	RNF6	SNP	Missense_Mutation	13	26788550	C	T	22	95
BRCA	TCGA-A2-A25C	PCNX	SNP	Missense_Mutation	14	71445273	C	A	28	97
BRCA	TCGA-A2-A25C	KCNK13	SNP	Missense_Mutation	14	90650606	G	T	34	71
BRCA	TCGA-A2-A25C	COL1A1	SNP	Silent	17	48263001	G	T	39	48
BRCA	TCGA-A2-A25C	ZNF473	SNP	Silent	19	50548576	T	C	57	46
BRCA	TCGA-A2-A25C	TTN	SNP	Silent	2	179446724	G	A	39	34
BRCA	TCGA-A2-A25C	TTN	SNP	Missense_Mutation	2	179465819	C	A	32	55
BRCA	TCGA-A2-A25C	NCAM2	SNP	Missense_Mutation	21	22881175	C	T	19	80
BRCA	TCGA-A2-A25C	WDR4	SNP	Missense_Mutation	21	44282454	C	A	32	63
BRCA	TCGA-A2-A25C	CP	SNP	Missense_Mutation	3	148930428	C	A	32	56
BRCA	TCGA-A2-A25C	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A2-A25C	CPE	SNP	Missense_Mutation	4	166403460	C	T	32	97
BRCA	TCGA-A2-A25C	MCTP1	SNP	Missense_Mutation	5	94289001	T	C	57	53
BRCA	TCGA-A2-A25C	AKAP7	SNP	Missense_Mutation	6	131602771	G	A	41	85
BRCA	TCGA-A2-A25C	MED23	SNP	Nonsense_Mutation	6	131921249	G	A	45	100
BRCA	TCGA-A2-A25C	EEF1A1	SNP	Missense_Mutation	6	74229730	T	C	51	88
BRCA	TCGA-A2-A25C	PLXNA4	SNP	Missense_Mutation	7	132169630	T	A	55	51
BRCA	TCGA-A2-A25C	KIAA1147	SNP	Silent	7	141365078	G	A	46	52
BRCA	TCGA-A2-A25C	KCNK9	SNP	Missense_Mutation	8	140715207	G	A	41	93
BRCA	TCGA-A2-A25C	OR1J1	SNP	Missense_Mutation	9	125240172	A	G	2	85
BRCA	TCGA-A2-A25D	IGSF3	SNP	Silent	1	117131545	G	A	39	44
BRCA	TCGA-A2-A25D	DARC	SNP	Missense_Mutation	1	159175653	G	T	46	76
BRCA	TCGA-A2-A25D	UBR4	SNP	Silent	1	19518987	C	A	22	54
BRCA	TCGA-A2-A25D	LBR	SNP	Missense_Mutation	1	225609856	A	C	12	52
BRCA	TCGA-A2-A25D	C1QA	SNP	Missense_Mutation	1	22965464	G	A	42	98
BRCA	TCGA-A2-A25D	SRRM1	SNP	Missense_Mutation	1	24972547	G	A	33	100
BRCA	TCGA-A2-A25D	ABCC8	SNP	Silent	11	17434216	G	A	33	65
BRCA	TCGA-A2-A25D	OR2AG2	SNP	Silent	11	6789589	G	A	40	50
BRCA	TCGA-A2-A25D	IQSEC3	SNP	Missense_Mutation	12	266274	G	A	43	94
BRCA	TCGA-A2-A25D	ITPR2	SNP	Missense_Mutation	12	26755633	T	C	64	64
BRCA	TCGA-A2-A25D	SLC38A2	SNP	Silent	12	46754960	C	T	29	59
BRCA	TCGA-A2-A25D	ESPL1	SNP	Silent	12	53670885	C	A	30	53
BRCA	TCGA-A2-A25D	MYH6	SNP	Nonsense_Mutation	14	23858706	G	A	46	83
BRCA	TCGA-A2-A25D	DDX24	SNP	Silent	14	94524189	G	T	41	49
BRCA	TCGA-A2-A25D	ZFP106	SNP	Silent	15	42743987	G	A	34	65
BRCA	TCGA-A2-A25D	SEPT1	SNP	Silent	16	30393472	G	C	45	54
BRCA	TCGA-A2-A25D	SEPT12	SNP	Missense_Mutation	16	4835875	C	T	22	82
BRCA	TCGA-A2-A25D	MMP28	SNP	Missense_Mutation	17	34105965	C	A	22	77
BRCA	TCGA-A2-A25D	FBF1	SNP	Missense_Mutation	17	73924235	T	C	62	73
BRCA	TCGA-A2-A25D	ENPP7	SNP	Missense_Mutation	17	77705092	C	A	25	96
BRCA	TCGA-A2-A25D	APCDD1	SNP	Nonsense_Mutation	18	10487617	C	A	27	58
BRCA	TCGA-A2-A25D	PIEZO2	SNP	Silent	18	10761023	C	T	23	45
BRCA	TCGA-A2-A25D	TRAPPC8	SNP	Silent	18	29480941	T	C	51	37
BRCA	TCGA-A2-A25D	LAMA1	SNP	Missense_Mutation	18	7042194	G	A	41	95
BRCA	TCGA-A2-A25D	LPPR2	SNP	Silent	19	11470279	C	T	22	49
BRCA	TCGA-A2-A25D	ZNF780A	SNP	Missense_Mutation	19	40581727	A	C	4	44
BRCA	TCGA-A2-A25D	MUC16	SNP	Missense_Mutation	19	9060763	T	G	59	46
BRCA	TCGA-A2-A25D	CWC22	SNP	Splice_site	2	180858042	T	G	56	53
BRCA	TCGA-A2-A25D	COL6A3	SNP	Missense_Mutation	2	238277616	G	A	42	45
BRCA	TCGA-A2-A25D	GTF3C2	SNP	Missense_Mutation	2	27551716	C	T	19	73
BRCA	TCGA-A2-A25D	LTBP1	SNP	Silent	2	33585833	G	T	39	25
BRCA	TCGA-A2-A25D	PROKR1	SNP	Missense_Mutation	2	68882542	C	T	20	80
BRCA	TCGA-A2-A25D	ALMS1	SNP	Missense_Mutation	2	73635817	C	G	32	70
BRCA	TCGA-A2-A25D	GZF1	SNP	Missense_Mutation	20	23345750	C	A	20	67
BRCA	TCGA-A2-A25D	KIAA1755	SNP	Missense_Mutation	20	36841476	A	G	11	70
BRCA	TCGA-A2-A25D	SEMG2	SNP	Missense_Mutation	20	43851070	A	T	4	51
BRCA	TCGA-A2-A25D	ATR	SNP	Splice_Site	3	142234359	T	C	55	93
BRCA	TCGA-A2-A25D	PLD1	SNP	Missense_Mutation	3	171406629	T	C	49	78
BRCA	TCGA-A2-A25D	PIK3CA	DEL	In_Frame_Del	3	178916938	GAA	-	45	97
BRCA	TCGA-A2-A25D	OR5H1	SNP	Missense_Mutation	3	97852403	A	G	16	44
BRCA	TCGA-A2-A25D	GUCY1B3	SNP	Splice_Site	4	156724917	G	A	44	88
BRCA	TCGA-A2-A25D	ATP10D	SNP	Missense_Mutation	4	47560135	G	C	41	84
BRCA	TCGA-A2-A25D	PSD2	SNP	Missense_Mutation	5	139193009	G	A	39	91
BRCA	TCGA-A2-A25D	CYSTM1	SNP	Missense_Mutation	5	139574060	G	C	33	79
BRCA	TCGA-A2-A25D	PCDHA12	SNP	Missense_Mutation	5	140255068	T	C	50	50
BRCA	TCGA-A2-A25D	MNF1	SNP	Missense_Mutation	6	33679361	C	A	18	96
BRCA	TCGA-A2-A25D	PTCHD4	SNP	Silent	6	47846156	C	T	19	52
BRCA	TCGA-A2-A25D	ELOVL5	SNP	Splice_site	6	53133926	C	T	29	94
BRCA	TCGA-A2-A25D	PKHD1L1	INS	Frame_Shift_Ins	8	110471843	-	A	45	92
BRCA	TCGA-A2-A25D	MYBL1	SNP	Splice_Site	8	67509563	A	T	6	91
BRCA	TCGA-A2-A25D	ADAMTS13	INS	Frame_Shift_Ins	9	136324188	-	A	29	46
BRCA	TCGA-A2-A25D	DDX58	SNP	Missense_Mutation	9	32459494	G	A	45	51
BRCA	TCGA-A2-A25E	SLC16A1	SNP	Missense_Mutation	1	113456731	C	T	19	55
BRCA	TCGA-A2-A25E	ATP1A4	SNP	Missense_Mutation	1	160134150	C	G	28	94
BRCA	TCGA-A2-A25E	TNFSF4	SNP	Splice_site	1	173157660	C	T	23	44
BRCA	TCGA-A2-A25E	LIN9	SNP	Silent	1	226426761	G	T	38	61
BRCA	TCGA-A2-A25E	LYST	SNP	Missense_Mutation	1	235891402	T	C	61	90
BRCA	TCGA-A2-A25E	CEP85	SNP	Missense_Mutation	1	26582252	T	G	59	74
BRCA	TCGA-A2-A25E	MAP3K6	SNP	Nonsense_Mutation	1	27682955	G	C	44	73
BRCA	TCGA-A2-A25E	USP1	SNP	Silent	1	62905637	T	G	53	51
BRCA	TCGA-A2-A25E	ENTPD7	SNP	Missense_Mutation	10	101458349	C	T	26	95
BRCA	TCGA-A2-A25E	ITIH2	SNP	Missense_Mutation	10	7773943	T	C	60	89
BRCA	TCGA-A2-A25E	MLL	INS	Frame_Shift_Ins	11	118344574	-	TAAA	33	82
BRCA	TCGA-A2-A25E	TMEM86A	SNP	Missense_Mutation	11	18723330	G	C	39	54
BRCA	TCGA-A2-A25E	TTC17	SNP	Silent	11	43411360	C	T	25	77
BRCA	TCGA-A2-A25E	KBTBD4	INS	Frame_Shift_Ins	11	47599443	-	A	36	65
BRCA	TCGA-A2-A25E	SLC3A2	SNP	Silent	11	62652118	C	T	32	51
BRCA	TCGA-A2-A25E	CHPT1	SNP	Missense_Mutation	12	102117039	A	C	1	69
BRCA	TCGA-A2-A25E	SART3	SNP	Missense_Mutation	12	108920132	G	A	44	83
BRCA	TCGA-A2-A25E	CCDC60	SNP	Silent	12	119966483	G	A	35	64
BRCA	TCGA-A2-A25E	ERC1	SNP	Missense_Mutation	12	1517405	C	G	22	97
BRCA	TCGA-A2-A25E	LNX2	SNP	Missense_Mutation	13	28134091	G	T	34	77
BRCA	TCGA-A2-A25E	TTLL5	DEL	In_Frame_Del	14	76246009	AAC	-	9	57
BRCA	TCGA-A2-A25E	ITGAX	SNP	Silent	16	31384615	A	G	3	33
BRCA	TCGA-A2-A25E	ULK2	SNP	Missense_Mutation	17	19699025	C	T	23	96
BRCA	TCGA-A2-A25E	ABCA10	SNP	Nonsense_Mutation	17	67190107	G	A	45	52
BRCA	TCGA-A2-A25E	RNASEK	SNP	Missense_Mutation	17	6917541	T	C	54	62
BRCA	TCGA-A2-A25E	RHBDF2	SNP	Missense_Mutation	17	74470176	T	C	51	50
BRCA	TCGA-A2-A25E	ROCK1	SNP	Missense_Mutation	18	18586456	G	C	35	62
BRCA	TCGA-A2-A25E	ONECUT2	INS	In_Frame_Ins	18	55103476	-	CAC	38	43
BRCA	TCGA-A2-A25E	ZNF546	SNP	Missense_Mutation	19	40520249	G	A	45	50
BRCA	TCGA-A2-A25E	GSK3A	SNP	Missense_Mutation	19	42744148	G	C	36	54
BRCA	TCGA-A2-A25E	GLI2	SNP	Missense_Mutation	2	121685040	C	G	19	47
BRCA	TCGA-A2-A25E	WDR33	SNP	Missense_Mutation	2	128526530	G	A	42	98
BRCA	TCGA-A2-A25E	FIGLA	SNP	Missense_Mutation	2	71012744	T	C	53	68
BRCA	TCGA-A2-A25E	NSFL1C	SNP	Missense_Mutation	20	1435746	G	C	48	97
BRCA	TCGA-A2-A25E	ATP9A	SNP	Missense_Mutation	20	50238636	G	T	47	97
BRCA	TCGA-A2-A25E	WWC3	SNP	Missense_Mutation	23	10102560	C	G	31	83
BRCA	TCGA-A2-A25E	PHKA2	SNP	Splice_site	23	18942252	G	T	46	60
BRCA	TCGA-A2-A25E	AWAT2	SNP	Missense_Mutation	23	69263413	C	A	32	87
BRCA	TCGA-A2-A25E	BRWD3	SNP	Silent	23	79999555	A	G	4	60
BRCA	TCGA-A2-A25E	MAP3K13	SNP	Splice_Site	3	185165736	G	A	44	100
BRCA	TCGA-A2-A25E	TCTEX1D2	DEL	In_Frame_Del	3	196044967	CTCAGC	-	32	56
BRCA	TCGA-A2-A25E	CX3CR1	DEL	Frame_Shift_Del	3	39306996	TC	-	62	45
BRCA	TCGA-A2-A25E	RBM46	SNP	Missense_Mutation	4	155719029	A	T	16	93
BRCA	TCGA-A2-A25E	UGT2B7	SNP	Missense_Mutation	4	69973931	G	C	45	73
BRCA	TCGA-A2-A25E	IQGAP2	SNP	Missense_Mutation	5	75970488	C	T	32	69
BRCA	TCGA-A2-A25E	ATXN1	SNP	Missense_Mutation	6	16326909	G	T	43	79
BRCA	TCGA-A2-A25E	KIAA0319	SNP	Missense_Mutation	6	24559272	C	G	25	62
BRCA	TCGA-A2-A25E	HIST1H2BE	INS	In_Frame_Ins	6	26184396	-	TGG	54	74
BRCA	TCGA-A2-A25E	HIST1H2AI	SNP	Missense_Mutation	6	27776320	C	A	17	69
BRCA	TCGA-A2-A25E	GPR116	SNP	Silent	6	46851971	G	A	38	43
BRCA	TCGA-A2-A25E	MOGAT3	SNP	Missense_Mutation	7	100842014	G	C	44	72
BRCA	TCGA-A2-A25E	GIMAP6	SNP	Missense_Mutation	7	150325382	G	T	43	49
BRCA	TCGA-A2-A25E	ZNF16	SNP	Missense_Mutation	8	146157623	C	T	29	50
BRCA	TCGA-A2-A25E	C5	SNP	Splice_site	9	123789552	T	A	50	53
BRCA	TCGA-A2-A25E	RFK	SNP	Missense_Mutation	9	79009015	T	C	51	72
BRCA	TCGA-A2-A25E	NTRK2	SNP	Nonsense_Mutation	9	87563383	A	T	9	91
BRCA	TCGA-A2-A25F	KLK5	SNP	Silent	19	51452257	G	A	36	54
BRCA	TCGA-A7-A0CD	C1orf53	SNP	Silent	1	197875018	G	A	40	52
BRCA	TCGA-A7-A0CD	ZC3H12A	DEL	Frame_Shift_Del	1	37941282	C	-	30	70
BRCA	TCGA-A7-A0CD	LPHN2	SNP	Missense_Mutation	1	82456779	C	A	30	84
BRCA	TCGA-A7-A0CD	PRKRIR	SNP	Missense_Mutation	11	76062581	T	A	62	89
BRCA	TCGA-A7-A0CD	NLRP10	SNP	Missense_Mutation	11	7982638	G	A	37	50
BRCA	TCGA-A7-A0CD	TAS2R13	SNP	Translation_Start_Site	12	11062036	G	A	40	40
BRCA	TCGA-A7-A0CD	FOXM1	SNP	Silent	12	2977870	C	T	28	51
BRCA	TCGA-A7-A0CD	GPR132	SNP	Silent	14	105517442	G	A	39	0
BRCA	TCGA-A7-A0CD	CERS3	SNP	Silent	15	101009639	C	T	17	53
BRCA	TCGA-A7-A0CD	MYH3	SNP	Silent	17	10543517	C	T	28	53
BRCA	TCGA-A7-A0CD	ORMDL3	SNP	Missense_Mutation	17	38079470	G	A	44	100
BRCA	TCGA-A7-A0CD	SCN4A	SNP	Missense_Mutation	17	62034875	G	A	38	56
BRCA	TCGA-A7-A0CD	COG1	SNP	Missense_Mutation	17	71199175	G	A	33	81
BRCA	TCGA-A7-A0CD	NEURL4	SNP	Missense_Mutation	17	7227492	G	A	39	99
BRCA	TCGA-A7-A0CD	POLR2A	SNP	Missense_Mutation	17	7412461	A	G	10	87
BRCA	TCGA-A7-A0CD	ZNF208	SNP	Silent	19	22157191	G	T	43	33
BRCA	TCGA-A7-A0CD	ASXL1	SNP	Silent	20	31023224	G	T	37	41
BRCA	TCGA-A7-A0CD	CHD6	SNP	Missense_Mutation	20	40050464	G	C	43	100
BRCA	TCGA-A7-A0CD	PHKA2	SNP	Splice_site	23	18954268	C	A	18	85
BRCA	TCGA-A7-A0CD	POLA1	SNP	Missense_Mutation	23	24859809	A	T	3	57
BRCA	TCGA-A7-A0CD	CD200R1	SNP	Missense_Mutation	3	112648015	C	G	24	58
BRCA	TCGA-A7-A0CD	PLXNA1	DEL	Frame_Shift_Del	3	126724942	CT	-	20	80
BRCA	TCGA-A7-A0CD	SST	SNP	Missense_Mutation	3	187388034	C	T	19	57
BRCA	TCGA-A7-A0CD	AFF4	SNP	Missense_Mutation	5	132232866	C	T	20	87
BRCA	TCGA-A7-A0CD	FGF18	SNP	Silent	5	170883698	C	T	19	46
BRCA	TCGA-A7-A0CD	NIPBL	SNP	Missense_Mutation	5	37006526	C	T	27	98
BRCA	TCGA-A7-A0CD	PTCHD4	SNP	Missense_Mutation	6	47976376	C	T	27	98
BRCA	TCGA-A7-A0CD	LAMB1	SNP	Splice_site	7	107638937	C	T	30	100
BRCA	TCGA-A7-A0CD	CARD11	SNP	Silent	7	2983933	G	A	40	48
BRCA	TCGA-A7-A0CD	CPSF4	SNP	Missense_Mutation	7	99054076	G	A	38	99
BRCA	TCGA-A7-A0CE	NPPA	SNP	Missense_Mutation	1	11907684	G	C	35	66
BRCA	TCGA-A7-A0CE	SLC27A3	DEL	Frame_Shift_Del	1	153748207	C	-	27	49
BRCA	TCGA-A7-A0CE	TRIM46	SNP	Missense_Mutation	1	155152365	G	T	39	86
BRCA	TCGA-A7-A0CE	OR6K6	SNP	Missense_Mutation	1	158724637	C	G	30	45
BRCA	TCGA-A7-A0CE	FMO2	SNP	Silent	1	171174757	G	C	45	43
BRCA	TCGA-A7-A0CE	KDM5B	SNP	Missense_Mutation	1	202722080	G	C	34	89
BRCA	TCGA-A7-A0CE	KIF17	SNP	Missense_Mutation	1	20991082	G	C	33	68
BRCA	TCGA-A7-A0CE	CDC42BPA	SNP	Missense_Mutation	1	227198691	T	C	49	83
BRCA	TCGA-A7-A0CE	OR2T3	SNP	Silent	1	248637179	T	A	53	38
BRCA	TCGA-A7-A0CE	OR2G6	SNP	Silent	1	248685865	G	T	47	52
BRCA	TCGA-A7-A0CE	IPP	SNP	Missense_Mutation	1	46206690	C	A	28	71
BRCA	TCGA-A7-A0CE	CDC7	SNP	Missense_Mutation	1	91989621	G	C	33	98
BRCA	TCGA-A7-A0CE	FAM171A1	SNP	Nonsense_Mutation	10	15255345	C	A	29	100
BRCA	TCGA-A7-A0CE	PHLDB1	SNP	Missense_Mutation	11	118498674	C	T	30	80
BRCA	TCGA-A7-A0CE	TREH	SNP	Missense_Mutation	11	118533617	A	T	12	55
BRCA	TCGA-A7-A0CE	OR5T1	SNP	Missense_Mutation	11	56043581	T	A	54	64
BRCA	TCGA-A7-A0CE	SMTNL1	SNP	Missense_Mutation	11	57314020	C	A	26	81
BRCA	TCGA-A7-A0CE	ZFPL1	SNP	Missense_Mutation	11	64853916	C	T	19	60
BRCA	TCGA-A7-A0CE	IGHMBP2	SNP	Missense_Mutation	11	68678969	G	A	38	24
BRCA	TCGA-A7-A0CE	NARS2	SNP	Silent	11	78189715	C	G	17	49
BRCA	TCGA-A7-A0CE	DRAM1	SNP	Missense_Mutation	12	102302031	C	G	19	69
BRCA	TCGA-A7-A0CE	CORO1C	SNP	Missense_Mutation	12	109051186	G	A	46	100
BRCA	TCGA-A7-A0CE	PIK3C2G	SNP	Missense_Mutation	12	18644449	T	A	56	72
BRCA	TCGA-A7-A0CE	GRK1	SNP	Missense_Mutation	13	114325966	A	C	4	73
BRCA	TCGA-A7-A0CE	ISM2	SNP	Missense_Mutation	14	77950743	T	A	57	49
BRCA	TCGA-A7-A0CE	LOC653720	DEL	Frame_Shift_Del	15	28947125	G	-	34	54
BRCA	TCGA-A7-A0CE	CKMT1B	SNP	Silent	15	43891108	T	G	59	48
BRCA	TCGA-A7-A0CE	ITGAX	SNP	Missense_Mutation	16	31373464	T	A	49	39
BRCA	TCGA-A7-A0CE	SALL1	DEL	Frame_Shift_Del	16	51172798	G	-	35	77
BRCA	TCGA-A7-A0CE	SALL1	SNP	Silent	16	51172800	C	T	26	69
BRCA	TCGA-A7-A0CE	HYDIN	SNP	Missense_Mutation	16	71052178	G	T	44	57
BRCA	TCGA-A7-A0CE	GLG1	SNP	Missense_Mutation	16	74514249	G	C	37	100
BRCA	TCGA-A7-A0CE	TRPV2	SNP	Silent	17	16335509	C	A	24	46
BRCA	TCGA-A7-A0CE	RTN4RL1	SNP	Nonsense_Mutation	17	1840864	G	C	36	66
BRCA	TCGA-A7-A0CE	ZZEF1	SNP	Missense_Mutation	17	3954156	T	C	58	73
BRCA	TCGA-A7-A0CE	MTMR4	SNP	Missense_Mutation	17	56581186	C	T	25	68
BRCA	TCGA-A7-A0CE	ABCA9	SNP	Missense_Mutation	17	67020435	A	G	12	83
BRCA	TCGA-A7-A0CE	TP53	SNP	Missense_Mutation	17	7578467	T	G	59	53
BRCA	TCGA-A7-A0CE	MAPK4	SNP	Missense_Mutation	18	48252421	T	A	49	87
BRCA	TCGA-A7-A0CE	DCC	SNP	Silent	18	50976883	A	T	10	45
BRCA	TCGA-A7-A0CE	ONECUT2	SNP	Missense_Mutation	18	55143875	C	T	27	69
BRCA	TCGA-A7-A0CE	RFX1	SNP	Missense_Mutation	19	14076329	C	G	25	93
BRCA	TCGA-A7-A0CE	TSHZ3	SNP	Silent	19	31767507	G	A	40	53
BRCA	TCGA-A7-A0CE	FCGBP	SNP	Missense_Mutation	19	40392553	C	T	31	69
BRCA	TCGA-A7-A0CE	CEACAM5	SNP	Missense_Mutation	19	42213656	C	G	19	46
BRCA	TCGA-A7-A0CE	TMIGD2	SNP	Missense_Mutation	19	4298081	C	A	28	32
BRCA	TCGA-A7-A0CE	QPCTL	SNP	Splice_site	19	46196814	G	A	35	80
BRCA	TCGA-A7-A0CE	STRN4	SNP	Nonsense_Mutation	19	47240084	G	A	39	79
BRCA	TCGA-A7-A0CE	CCDC9	SNP	Missense_Mutation	19	47769965	A	T	3	51
BRCA	TCGA-A7-A0CE	TMEM143	SNP	Silent	19	48848500	G	A	34	61
BRCA	TCGA-A7-A0CE	TTN	SNP	Missense_Mutation	2	179641483	G	A	47	100
BRCA	TCGA-A7-A0CE	FAM117B	SNP	Missense_Mutation	2	203591010	A	G	6	72
BRCA	TCGA-A7-A0CE	LHCGR	SNP	Missense_Mutation	2	48958413	T	G	56	65
BRCA	TCGA-A7-A0CE	DYSF	SNP	Missense_Mutation	2	71743347	T	G	55	85
BRCA	TCGA-A7-A0CE	MGAT4A	SNP	Silent	2	99279578	A	C	9	52
BRCA	TCGA-A7-A0CE	MAVS	SNP	Silent	20	3846668	G	C	41	51
BRCA	TCGA-A7-A0CE	CXorf66	SNP	Missense_Mutation	23	139038828	A	T	8	44
BRCA	TCGA-A7-A0CE	TBC1D25	SNP	Missense_Mutation	23	48418941	C	G	22	63
BRCA	TCGA-A7-A0CE	CYSLTR1	SNP	Missense_Mutation	23	77528443	A	C	6	52
BRCA	TCGA-A7-A0CE	SATL1	SNP	Missense_Mutation	23	84349172	A	T	3	62
BRCA	TCGA-A7-A0CE	MYH15	SNP	Silent	3	108158716	G	T	45	50
BRCA	TCGA-A7-A0CE	HCLS1	SNP	Silent	3	121361820	G	A	37	52
BRCA	TCGA-A7-A0CE	BCHE	SNP	Missense_Mutation	3	165491226	A	T	7	81
BRCA	TCGA-A7-A0CE	NCEH1	SNP	Missense_Mutation	3	172428805	G	C	42	50
BRCA	TCGA-A7-A0CE	SPATA16	SNP	Silent	3	172835390	T	A	59	48
BRCA	TCGA-A7-A0CE	HTR3E	SNP	Silent	3	183823579	C	A	32	54
BRCA	TCGA-A7-A0CE	IMPDH2	SNP	Missense_Mutation	3	49062341	T	C	60	64
BRCA	TCGA-A7-A0CE	DUSP7	SNP	Missense_Mutation	3	52088078	A	C	10	91
BRCA	TCGA-A7-A0CE	SYNPO2	SNP	Missense_Mutation	4	119948056	G	A	40	46
BRCA	TCGA-A7-A0CE	LDB2	SNP	Missense_Mutation	4	16587601	G	T	34	100
BRCA	TCGA-A7-A0CE	PIGG	SNP	Missense_Mutation	4	502620	G	C	33	53
BRCA	TCGA-A7-A0CE	RASL11B	SNP	Missense_Mutation	4	53731706	C	G	17	76
BRCA	TCGA-A7-A0CE	PCDHB2	SNP	Missense_Mutation	5	140476160	G	A	39	67
BRCA	TCGA-A7-A0CE	FYB	SNP	Missense_Mutation	5	39135064	T	A	64	83
BRCA	TCGA-A7-A0CE	VCAN	SNP	Missense_Mutation	5	82843850	A	C	2	62
BRCA	TCGA-A7-A0CE	MYCT1	SNP	Nonsense_Mutation	6	153043116	C	T	27	53
BRCA	TCGA-A7-A0CE	TRERF1	SNP	Nonsense_Mutation	6	42224823	A	T	5	68
BRCA	TCGA-A7-A0CE	CDC5L	SNP	Silent	6	44360503	G	A	41	54
BRCA	TCGA-A7-A0CE	SRRT	SNP	Missense_Mutation	7	100479395	A	T	8	66
BRCA	TCGA-A7-A0CE	SLC26A3	SNP	Missense_Mutation	7	107427288	C	A	21	92
BRCA	TCGA-A7-A0CE	PTPRZ1	SNP	Missense_Mutation	7	121695092	C	G	32	88
BRCA	TCGA-A7-A0CE	GCC1	DEL	In_Frame_Del	7	127222694	CCAGCTCCTGCCGGTGGAGCTGCTGCAGCCGGG	-	30	79
BRCA	TCGA-A7-A0CE	PRKAG2	SNP	Silent	7	151265913	T	C	49	50
BRCA	TCGA-A7-A0CE	ANLN	SNP	Missense_Mutation	7	36438976	G	C	38	77
BRCA	TCGA-A7-A0CE	HECW1	SNP	Missense_Mutation	7	43546850	A	T	1	92
BRCA	TCGA-A7-A0CE	COL28A1	SNP	Missense_Mutation	7	7571011	G	A	41	56
BRCA	TCGA-A7-A0CE	CDK14	SNP	Missense_Mutation	7	90741993	G	A	37	81
BRCA	TCGA-A7-A0CE	ATP6V1C1	SNP	Missense_Mutation	8	104078638	A	G	16	91
BRCA	TCGA-A7-A0CE	ANK1	SNP	Nonsense_Mutation	8	41615631	T	A	54	53
BRCA	TCGA-A7-A0CE	TNC	SNP	Missense_Mutation	9	117798505	C	T	27	54
BRCA	TCGA-A7-A0CE	NOL6	SNP	Silent	9	33464968	G	A	43	47
BRCA	TCGA-A7-A0CG	CFH	SNP	Missense_Mutation	1	196684769	C	A	20	40
BRCA	TCGA-A7-A0CG	MRPL43	INS	Frame_Shift_Ins	10	102746498	-	C	46	49
BRCA	TCGA-A7-A0CG	OR13A1	DEL	Frame_Shift_Del	10	45799219	C	-	17	54
BRCA	TCGA-A7-A0CG	LIPA	SNP	Silent	10	90983549	C	T	19	27
BRCA	TCGA-A7-A0CG	DNTT	SNP	Missense_Mutation	10	98064304	G	A	39	61
BRCA	TCGA-A7-A0CG	LYVE1	SNP	Missense_Mutation	11	10590003	C	T	19	40
BRCA	TCGA-A7-A0CG	MADD	SNP	Missense_Mutation	11	47304060	C	T	22	99
BRCA	TCGA-A7-A0CG	PRKAB1	SNP	Missense_Mutation	12	120110208	G	A	39	82
BRCA	TCGA-A7-A0CG	GALNT6	SNP	Silent	12	51758021	G	A	39	18
BRCA	TCGA-A7-A0CG	WNK1	SNP	Missense_Mutation	12	970284	C	T	19	63
BRCA	TCGA-A7-A0CG	GANC	SNP	Missense_Mutation	15	42602936	A	G	7	55
BRCA	TCGA-A7-A0CG	FGF7	SNP	Missense_Mutation	15	49716681	G	C	41	84
BRCA	TCGA-A7-A0CG	MYO5B	SNP	Missense_Mutation	18	47431047	G	A	39	82
BRCA	TCGA-A7-A0CG	CYP4F8	SNP	Missense_Mutation	19	15729028	T	G	62	49
BRCA	TCGA-A7-A0CG	ZCCHC16	SNP	Nonsense_Mutation	23	111698592	C	A	25	51
BRCA	TCGA-A7-A0CG	ATXN3L	SNP	Missense_Mutation	23	13337012	T	A	62	55
BRCA	TCGA-A7-A0CG	CXorf58	SNP	Nonsense_Mutation	23	23934438	C	A	29	64
BRCA	TCGA-A7-A0CG	ARSH	SNP	Missense_Mutation	23	2928087	C	T	23	53
BRCA	TCGA-A7-A0CG	FAM47C	SNP	Missense_Mutation	23	37027582	C	T	23	50
BRCA	TCGA-A7-A0CG	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A7-A0CG	ARAP2	SNP	Missense_Mutation	4	36212227	A	T	2	54
BRCA	TCGA-A7-A0CG	MARCH11	SNP	Silent	5	16091113	G	T	47	52
BRCA	TCGA-A7-A0CG	GUCA1A	SNP	Missense_Mutation	6	42141470	G	A	38	78
BRCA	TCGA-A7-A0CG	B3GAT2	SNP	Missense_Mutation	6	71603840	C	T	31	100
BRCA	TCGA-A7-A0CG	ATP6V0A4	SNP	Missense_Mutation	7	138394499	G	C	35	72
BRCA	TCGA-A7-A0CG	EIF3B	SNP	Silent	7	2409146	C	T	32	50
BRCA	TCGA-A7-A0CG	ANLN	SNP	Silent	7	36447459	G	A	37	41
BRCA	TCGA-A7-A0CG	PAPOLB	SNP	Silent	7	4900572	C	T	28	64
BRCA	TCGA-A7-A0CG	KLF4	SNP	Missense_Mutation	9	110249348	T	G	64	78
BRCA	TCGA-A7-A0CH	C1orf198	SNP	Missense_Mutation	1	230979500	A	G	7	53
BRCA	TCGA-A7-A0CH	RYR2	SNP	Silent	1	237947546	C	T	19	39
BRCA	TCGA-A7-A0CH	SORCS3	SNP	Missense_Mutation	10	106959855	C	G	18	85
BRCA	TCGA-A7-A0CH	KRTAP5-4	SNP	Missense_Mutation	11	1643082	T	C	49	53
BRCA	TCGA-A7-A0CH	MS4A4A	SNP	Silent	11	60059842	A	G	2	51
BRCA	TCGA-A7-A0CH	TBX3	INS	Frame_Shift_Ins	12	115118819	-	C	14	51
BRCA	TCGA-A7-A0CH	WIBG	SNP	Missense_Mutation	12	56297249	G	A	45	95
BRCA	TCGA-A7-A0CH	RDH16	SNP	Missense_Mutation	12	57348901	G	A	41	97
BRCA	TCGA-A7-A0CH	BCL11B	SNP	Missense_Mutation	14	99697891	G	A	39	82
BRCA	TCGA-A7-A0CH	SLCO3A1	SNP	Missense_Mutation	15	92647538	C	T	23	82
BRCA	TCGA-A7-A0CH	SOCS7	SNP	Missense_Mutation	17	36523768	G	A	47	100
BRCA	TCGA-A7-A0CH	DSC2	SNP	Missense_Mutation	18	28669470	C	A	17	55
BRCA	TCGA-A7-A0CH	LMAN1	DEL	In_Frame_Del	18	57000396	TGTGTT	-	55	90
BRCA	TCGA-A7-A0CH	KANK2	SNP	Missense_Mutation	19	11289393	A	G	11	44
BRCA	TCGA-A7-A0CH	AFTPH	SNP	Missense_Mutation	2	64780391	G	A	45	69
BRCA	TCGA-A7-A0CH	STAG2	SNP	Nonsense_Mutation	23	123220476	C	T	23	53
BRCA	TCGA-A7-A0CH	DHX36	SNP	Missense_Mutation	3	153995455	C	T	17	99
BRCA	TCGA-A7-A0CH	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A7-A0CH	KLHL24	SNP	Missense_Mutation	3	183368623	A	C	11	91
BRCA	TCGA-A7-A0CH	CLNK	SNP	Missense_Mutation	4	10566399	T	C	57	73
BRCA	TCGA-A7-A0CH	FRYL	SNP	Missense_Mutation	4	48588708	A	G	5	90
BRCA	TCGA-A7-A0CH	C1QTNF2	SNP	Missense_Mutation	5	159776696	C	G	18	49
BRCA	TCGA-A7-A0CH	PELO	SNP	Missense_Mutation	5	52097628	C	A	22	94
BRCA	TCGA-A7-A0CH	HIST1H2AI	SNP	Missense_Mutation	6	27776209	C	G	17	97
BRCA	TCGA-A7-A0CH	MDGA1	SNP	Silent	6	37622129	C	T	22	54
BRCA	TCGA-A7-A0CH	WDR91	SNP	Missense_Mutation	7	134890683	T	C	62	89
BRCA	TCGA-A7-A0CH	ZC3HAV1	SNP	Missense_Mutation	7	138738313	A	T	8	75
BRCA	TCGA-A7-A0CH	CSMD1	SNP	Silent	8	3263700	G	A	40	48
BRCA	TCGA-A7-A0CH	UNC5D	SNP	Missense_Mutation	8	35425642	A	T	5	65
BRCA	TCGA-A7-A0CH	LSM1	SNP	Silent	8	38033818	G	A	39	55
BRCA	TCGA-A7-A0CH	ABCA1	DEL	Frame_Shift_Del	9	107581011	T	-	56	93
BRCA	TCGA-A7-A0CJ	MFN2	SNP	Silent	1	12057416	G	A	45	60
BRCA	TCGA-A7-A0CJ	PRDM2	SNP	Silent	1	14106177	G	A	47	47
BRCA	TCGA-A7-A0CJ	PADI1	SNP	Missense_Mutation	1	17563838	T	C	59	85
BRCA	TCGA-A7-A0CJ	TMCC2	SNP	Missense_Mutation	1	205238746	G	C	36	60
BRCA	TCGA-A7-A0CJ	CDK18	SNP	Silent	1	205494290	G	T	47	74
BRCA	TCGA-A7-A0CJ	CCDC30	SNP	Nonsense_Mutation	1	43032078	C	T	31	70
BRCA	TCGA-A7-A0CJ	ZNF326	SNP	Silent	1	90470614	T	C	49	58
BRCA	TCGA-A7-A0CJ	DIP2C	SNP	Missense_Mutation	10	327200	C	T	23	100
BRCA	TCGA-A7-A0CJ	C11orf9	SNP	Silent	11	61533179	C	T	23	43
BRCA	TCGA-A7-A0CJ	OR10A4	SNP	Missense_Mutation	11	6898202	T	G	63	48
BRCA	TCGA-A7-A0CJ	ZBTB39	SNP	Missense_Mutation	12	57397309	G	A	47	79
BRCA	TCGA-A7-A0CJ	C14orf169	SNP	Missense_Mutation	14	73958862	G	A	37	99
BRCA	TCGA-A7-A0CJ	TMEM219	DNP	Missense_Mutation	16	29979452	CC	AG	26	56
BRCA	TCGA-A7-A0CJ	MYO15A	SNP	Silent	17	18044985	C	T	22	52
BRCA	TCGA-A7-A0CJ	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-A7-A0CJ	DSG4	SNP	Missense_Mutation	18	28979503	T	A	58	71
BRCA	TCGA-A7-A0CJ	ATP8B1	SNP	Missense_Mutation	18	55328529	C	A	27	86
BRCA	TCGA-A7-A0CJ	LSM14A	SNP	Silent	19	34699901	G	A	39	50
BRCA	TCGA-A7-A0CJ	ACTN4	SNP	Missense_Mutation	19	39196735	C	G	23	94
BRCA	TCGA-A7-A0CJ	PRKD2	SNP	Missense_Mutation	19	47193909	C	T	27	97
BRCA	TCGA-A7-A0CJ	KIR3DL1	SNP	Missense_Mutation	19	55327960	C	T	31	60
BRCA	TCGA-A7-A0CJ	FCAR	SNP	Missense_Mutation	19	55401036	C	T	19	34
BRCA	TCGA-A7-A0CJ	MUC16	SNP	Missense_Mutation	19	9070608	G	A	44	33
BRCA	TCGA-A7-A0CJ	TTN	SNP	Missense_Mutation	2	179597266	C	T	30	86
BRCA	TCGA-A7-A0CJ	NT5C1B	SNP	Silent	2	18745290	C	G	21	58
BRCA	TCGA-A7-A0CJ	ZSWIM2	SNP	Missense_Mutation	2	187693402	G	A	46	37
BRCA	TCGA-A7-A0CJ	CYP26B1	SNP	Silent	2	72362468	G	A	38	21
BRCA	TCGA-A7-A0CJ	C20orf160	SNP	Missense_Mutation	20	30605793	G	T	34	63
BRCA	TCGA-A7-A0CJ	FAM83C	SNP	Missense_Mutation	20	33875143	C	T	23	61
BRCA	TCGA-A7-A0CJ	CHD6	SNP	Missense_Mutation	20	40161841	C	A	24	58
BRCA	TCGA-A7-A0CJ	ZFP64	SNP	Missense_Mutation	20	50769369	C	G	32	63
BRCA	TCGA-A7-A0CJ	STX16	SNP	Splice_Site	20	57242358	G	C	34	52
BRCA	TCGA-A7-A0CJ	SGSM3	SNP	Missense_Mutation	22	40804998	G	A	38	98
BRCA	TCGA-A7-A0CJ	ARHGAP36	SNP	Missense_Mutation	23	130219619	C	A	22	84
BRCA	TCGA-A7-A0CJ	BCAP31	SNP	Missense_Mutation	23	152967514	T	A	54	84
BRCA	TCGA-A7-A0CJ	GPR34	SNP	Missense_Mutation	23	41555293	T	A	51	79
BRCA	TCGA-A7-A0CJ	TRO	DEL	Frame_Shift_Del	23	54955461	C	-	28	59
BRCA	TCGA-A7-A0CJ	CBLB	SNP	Missense_Mutation	3	105495384	C	T	31	100
BRCA	TCGA-A7-A0CJ	POLQ	SNP	Splice_site	3	121151152	T	G	61	41
BRCA	TCGA-A7-A0CJ	PIK3CA	SNP	Missense_Mutation	3	178936095	A	G	7	90
BRCA	TCGA-A7-A0CJ	SGOL1	SNP	Missense_Mutation	3	20212538	G	A	34	51
BRCA	TCGA-A7-A0CJ	CADM2	SNP	Missense_Mutation	3	85935421	C	G	32	73
BRCA	TCGA-A7-A0CJ	C5orf25	SNP	Missense_Mutation	5	175717932	C	G	28	53
BRCA	TCGA-A7-A0CJ	ADAMTS2	SNP	Missense_Mutation	5	178555022	T	C	58	63
BRCA	TCGA-A7-A0CJ	DAB2	SNP	Missense_Mutation	5	39377160	C	T	25	51
BRCA	TCGA-A7-A0CJ	NBPF22P	SNP	Silent	5	85578631	C	T	17	60
BRCA	TCGA-A7-A0CJ	TUBE1	SNP	Silent	6	112397208	T	C	64	56
BRCA	TCGA-A7-A0CJ	RPS6KA2	SNP	Missense_Mutation	6	166864673	C	T	30	95
BRCA	TCGA-A7-A0CJ	RPS6KA2	SNP	Missense_Mutation	6	166864676	C	T	32	95
BRCA	TCGA-A7-A0CJ	AGPAT1	SNP	Splice_Site	6	32138201	C	T	19	92
BRCA	TCGA-A7-A0CJ	FAM3C	SNP	Silent	7	121011389	G	A	40	54
BRCA	TCGA-A7-A0CJ	ZNF425	SNP	Missense_Mutation	7	148801816	C	T	30	74
BRCA	TCGA-A7-A0CJ	HOXA2	SNP	Missense_Mutation	7	27140422	C	T	19	83
BRCA	TCGA-A7-A0CJ	LRP12	SNP	Missense_Mutation	8	105503433	G	A	40	98
BRCA	TCGA-A7-A0CJ	SLCO5A1	DEL	Frame_Shift_Del	8	70744079	C	-	26	100
BRCA	TCGA-A7-A0CJ	SLCO5A1	DEL	Frame_Shift_Del	8	70744434	G	-	38	68
BRCA	TCGA-A7-A0CJ	C9orf131	SNP	Missense_Mutation	9	35044467	C	A	26	47
BRCA	TCGA-A7-A0CJ	RCL1	SNP	Silent	9	4841274	G	T	47	77
BRCA	TCGA-A7-A0D9	IL23R	SNP	Silent	1	67724313	G	A	38	40
BRCA	TCGA-A7-A0D9	RPL5	SNP	Missense_Mutation	1	93300436	C	G	25	99
BRCA	TCGA-A7-A0D9	RET	SNP	Missense_Mutation	10	43601945	G	A	39	70
BRCA	TCGA-A7-A0D9	MAPK8	SNP	Nonsense_Mutation	10	49609776	C	T	19	71
BRCA	TCGA-A7-A0D9	IFIT1B	SNP	Silent	10	91143442	T	C	56	41
BRCA	TCGA-A7-A0D9	ERC1	SNP	Missense_Mutation	12	1553842	C	T	30	97
BRCA	TCGA-A7-A0D9	SLCO1B1	SNP	Missense_Mutation	12	21329823	T	C	59	66
BRCA	TCGA-A7-A0D9	KLHL1	SNP	Missense_Mutation	13	70514225	C	T	27	100
BRCA	TCGA-A7-A0D9	LGALS9B	SNP	Silent	17	20363706	C	T	32	54
BRCA	TCGA-A7-A0D9	LGALS9B	SNP	Missense_Mutation	17	20363713	C	T	30	63
BRCA	TCGA-A7-A0D9	MMD	SNP	Missense_Mutation	17	53488649	G	A	45	96
BRCA	TCGA-A7-A0D9	MMD	SNP	Missense_Mutation	17	53488660	G	A	33	96
BRCA	TCGA-A7-A0D9	MMD	SNP	Missense_Mutation	17	53488766	G	A	41	96
BRCA	TCGA-A7-A0D9	PRR11	SNP	Missense_Mutation	17	57262856	T	C	56	63
BRCA	TCGA-A7-A0D9	ZRANB3	SNP	Splice_Site	2	135966549	C	A	32	82
BRCA	TCGA-A7-A0D9	ARFGEF2	SNP	Silent	20	47569307	G	A	45	51
BRCA	TCGA-A7-A0D9	DIDO1	SNP	Missense_Mutation	20	61542268	C	T	29	65
BRCA	TCGA-A7-A0D9	DIDO1	SNP	Silent	20	61542482	C	T	29	62
BRCA	TCGA-A7-A0D9	CSF2RB	SNP	Silent	22	37322192	C	A	23	52
BRCA	TCGA-A7-A0D9	WDR13	DEL	Frame_Shift_Del	23	48457777	G	-	47	92
BRCA	TCGA-A7-A0D9	KDM5C	SNP	Missense_Mutation	23	53254028	G	A	39	79
BRCA	TCGA-A7-A0D9	ZPLD1	SNP	Splice_site	3	102196287	G	A	44	65
BRCA	TCGA-A7-A0D9	PIK3CA	SNP	Missense_Mutation	3	178921552	A	C	4	89
BRCA	TCGA-A7-A0D9	PCDHB13	SNP	Missense_Mutation	5	140595229	C	A	21	52
BRCA	TCGA-A7-A0D9	LRRN3	SNP	Nonsense_Mutation	7	110762901	A	T	13	64
BRCA	TCGA-A7-A0D9	UBR5	SNP	Missense_Mutation	8	103335715	C	A	29	62
BRCA	TCGA-A7-A0D9	CSMD1	SNP	Silent	8	3165943	A	T	7	29
BRCA	TCGA-A7-A0DA	HIAT1	SNP	Missense_Mutation	1	100535194	G	C	48	75
BRCA	TCGA-A7-A0DA	KCNA10	SNP	Missense_Mutation	1	111060445	T	A	54	90
BRCA	TCGA-A7-A0DA	SPAG17	SNP	Missense_Mutation	1	118623811	T	C	62	46
BRCA	TCGA-A7-A0DA	DVL1	SNP	Missense_Mutation	1	1273446	T	A	57	76
BRCA	TCGA-A7-A0DA	ZNF687	SNP	Missense_Mutation	1	151262465	G	T	45	95
BRCA	TCGA-A7-A0DA	ATP8B2	SNP	Splice_site	1	154302873	A	C	3	68
BRCA	TCGA-A7-A0DA	UBQLN4	SNP	Missense_Mutation	1	156012608	C	G	28	72
BRCA	TCGA-A7-A0DA	NCSTN	SNP	Missense_Mutation	1	160314596	C	G	20	88
BRCA	TCGA-A7-A0DA	SELL	SNP	Missense_Mutation	1	169670813	G	T	33	55
BRCA	TCGA-A7-A0DA	CEP350	SNP	Nonsense_Mutation	1	180047635	C	G	20	58
BRCA	TCGA-A7-A0DA	NR5A2	SNP	Missense_Mutation	1	200017390	T	A	54	93
BRCA	TCGA-A7-A0DA	PLA2G2C	SNP	Missense_Mutation	1	20501650	G	A	37	36
BRCA	TCGA-A7-A0DA	LPGAT1	SNP	Missense_Mutation	1	211924401	G	A	47	92
BRCA	TCGA-A7-A0DA	SPATA17	SNP	Splice_site	1	217842375	G	T	44	51
BRCA	TCGA-A7-A0DA	MARC2	SNP	Missense_Mutation	1	220928454	C	G	17	33
BRCA	TCGA-A7-A0DA	HHIPL2	SNP	Missense_Mutation	1	222717112	A	T	8	49
BRCA	TCGA-A7-A0DA	COG2	SNP	Missense_Mutation	1	230822805	C	T	17	69
BRCA	TCGA-A7-A0DA	LYST	SNP	Silent	1	235922289	T	A	62	57
BRCA	TCGA-A7-A0DA	FMN2	SNP	Silent	1	240601454	C	T	29	66
BRCA	TCGA-A7-A0DA	EIF2C3	SNP	Missense_Mutation	1	36411332	G	T	33	100
BRCA	TCGA-A7-A0DA	GRIK3	SNP	Missense_Mutation	1	37270745	C	G	28	58
BRCA	TCGA-A7-A0DA	EPS15	SNP	Missense_Mutation	1	51912687	C	A	18	89
BRCA	TCGA-A7-A0DA	DNAJC6	SNP	Missense_Mutation	1	65860643	T	A	64	72
BRCA	TCGA-A7-A0DA	PIK3CD	SNP	Silent	1	9777151	C	G	21	46
BRCA	TCGA-A7-A0DA	DNMBP	SNP	Missense_Mutation	10	101643811	T	G	56	54
BRCA	TCGA-A7-A0DA	NFKB2	DEL	Frame_Shift_Del	10	104159031	GCCTGTATCCACAGGTGGCA	-	46	49
BRCA	TCGA-A7-A0DA	NFKB2	DEL	In_Frame_Del	10	104160110	GCTCTGCTG	-	34	63
BRCA	TCGA-A7-A0DA	NFKB2	DEL	Frame_Shift_Del	10	104160244	TGAGGG	-	63	48
BRCA	TCGA-A7-A0DA	BEND7	SNP	Missense_Mutation	10	13522910	C	G	18	86
BRCA	TCGA-A7-A0DA	CUBN	SNP	Missense_Mutation	10	16893262	C	G	24	39
BRCA	TCGA-A7-A0DA	CTNNA3	SNP	Silent	10	69299408	T	A	55	67
BRCA	TCGA-A7-A0DA	CHST3	DEL	In_Frame_Del	10	73767504	AAG	-	5	69
BRCA	TCGA-A7-A0DA	TTC18	SNP	Splice_site	10	75071672	G	C	46	63
BRCA	TCGA-A7-A0DA	CEP164	SNP	Silent	11	117280410	G	A	45	38
BRCA	TCGA-A7-A0DA	OR5I1	SNP	Missense_Mutation	11	55703812	C	T	27	53
BRCA	TCGA-A7-A0DA	SMTNL1	SNP	Nonsense_Mutation	11	57313409	G	T	41	57
BRCA	TCGA-A7-A0DA	OR10Q1	SNP	Missense_Mutation	11	57996010	C	A	28	51
BRCA	TCGA-A7-A0DA	RIN1	SNP	Missense_Mutation	11	66103801	G	C	35	59
BRCA	TCGA-A7-A0DA	GDPD5	SNP	Splice_Site	11	75167801	C	A	18	92
BRCA	TCGA-A7-A0DA	NAALAD2	SNP	Missense_Mutation	11	89916133	G	A	34	95
BRCA	TCGA-A7-A0DA	ARL1	SNP	Missense_Mutation	12	101790184	T	C	52	94
BRCA	TCGA-A7-A0DA	SLCO1C1	SNP	Missense_Mutation	12	20858927	C	T	20	82
BRCA	TCGA-A7-A0DA	CNTN1	SNP	Missense_Mutation	12	41327271	A	C	1	89
BRCA	TCGA-A7-A0DA	TSPAN31	SNP	Missense_Mutation	12	58140421	A	G	12	60
BRCA	TCGA-A7-A0DA	DPY19L2	DEL	Frame_Shift_Del	12	63964604	G	-	46	80
BRCA	TCGA-A7-A0DA	PIANP	SNP	Missense_Mutation	12	6804780	G	T	46	78
BRCA	TCGA-A7-A0DA	CEP290	SNP	Missense_Mutation	12	88513938	T	C	56	73
BRCA	TCGA-A7-A0DA	DHRS12	SNP	Missense_Mutation	13	52345531	C	G	28	49
BRCA	TCGA-A7-A0DA	AJUBA	SNP	Missense_Mutation	14	23451265	C	A	30	56
BRCA	TCGA-A7-A0DA	HEATR5A	SNP	Missense_Mutation	14	31787465	C	G	32	100
BRCA	TCGA-A7-A0DA	LRFN5	SNP	Missense_Mutation	14	42356845	C	G	19	52
BRCA	TCGA-A7-A0DA	FANCM	SNP	Silent	14	45644732	A	G	7	31
BRCA	TCGA-A7-A0DA	ASB7	DEL	Splice_Site	15	101152633	GTGA	-	44	99
BRCA	TCGA-A7-A0DA	ARHGAP11A	SNP	Missense_Mutation	15	32929935	C	A	17	48
BRCA	TCGA-A7-A0DA	SLC12A1	SNP	Missense_Mutation	15	48559801	C	T	27	49
BRCA	TCGA-A7-A0DA	ETFA	SNP	Silent	15	76578063	T	A	55	48
BRCA	TCGA-A7-A0DA	LOC648809	SNP	Missense_Mutation	15	84790350	G	A	47	70
BRCA	TCGA-A7-A0DA	ZNF774	DEL	In_Frame_Del	15	90904480	CAT	-	25	55
BRCA	TCGA-A7-A0DA	TRAF7	DEL	Frame_Shift_Del	16	2226284	AT	-	8	74
BRCA	TCGA-A7-A0DA	CASKIN1	SNP	Missense_Mutation	16	2240078	G	T	48	61
BRCA	TCGA-A7-A0DA	SRRM2	SNP	Missense_Mutation	16	2816694	A	C	12	43
BRCA	TCGA-A7-A0DA	LOC100132941	DEL	Frame_Shift_Del	16	33006399	G	-	48	42
BRCA	TCGA-A7-A0DA	ZNF174	SNP	Silent	16	3458760	G	A	40	29
BRCA	TCGA-A7-A0DA	SLX4	SNP	Missense_Mutation	16	3632422	G	C	44	85
BRCA	TCGA-A7-A0DA	NDRG4	SNP	Missense_Mutation	16	58543214	C	G	28	94
BRCA	TCGA-A7-A0DA	PPY2	SNP	Missense_Mutation	17	26574521	G	T	42	62
BRCA	TCGA-A7-A0DA	SUPT6H	SNP	Missense_Mutation	17	27028471	C	G	25	96
BRCA	TCGA-A7-A0DA	OR3A1	SNP	Missense_Mutation	17	3195848	G	A	48	70
BRCA	TCGA-A7-A0DA	MSL1	SNP	Silent	17	38290099	C	T	22	53
BRCA	TCGA-A7-A0DA	C17orf47	SNP	Missense_Mutation	17	56620848	C	T	25	49
BRCA	TCGA-A7-A0DA	MARCH10	SNP	Silent	17	60814611	C	A	19	39
BRCA	TCGA-A7-A0DA	CLEC10A	SNP	Missense_Mutation	17	6978705	A	C	8	57
BRCA	TCGA-A7-A0DA	ELP5	SNP	Missense_Mutation	17	7158042	T	C	54	77
BRCA	TCGA-A7-A0DA	MGAT5B	SNP	Splice_Site	17	74928858	G	T	44	91
BRCA	TCGA-A7-A0DA	TP53	SNP	Missense_Mutation	17	7578265	A	G	12	68
BRCA	TCGA-A7-A0DA	LOC100289074	SNP	Missense_Mutation	17	81083419	G	A	40	50
BRCA	TCGA-A7-A0DA	ATP8B1	SNP	Splice_Site	18	55361813	C	T	18	96
BRCA	TCGA-A7-A0DA	LDLR	SNP	Missense_Mutation	19	11216199	G	T	36	83
BRCA	TCGA-A7-A0DA	ATP1A3	SNP	Missense_Mutation	19	42474581	C	A	22	90
BRCA	TCGA-A7-A0DA	PPP1R13L	SNP	Missense_Mutation	19	45900186	C	T	28	57
BRCA	TCGA-A7-A0DA	BCAT2	SNP	Missense_Mutation	19	49302971	C	T	23	92
BRCA	TCGA-A7-A0DA	KLK15	SNP	Missense_Mutation	19	51330004	G	T	47	71
BRCA	TCGA-A7-A0DA	LILRA6	SNP	Nonsense_Mutation	19	54744774	G	T	34	50
BRCA	TCGA-A7-A0DA	COL5A2	SNP	Silent	2	189904113	A	T	15	47
BRCA	TCGA-A7-A0DA	STAT4	SNP	Missense_Mutation	2	191898277	T	A	61	51
BRCA	TCGA-A7-A0DA	MYT1L	SNP	Missense_Mutation	2	1946873	C	T	23	74
BRCA	TCGA-A7-A0DA	SPEG	DEL	In_Frame_Del	2	220329218	GCTGTGCCGGCT	-	42	61
BRCA	TCGA-A7-A0DA	C2orf71	SNP	Missense_Mutation	2	29294720	G	T	35	55
BRCA	TCGA-A7-A0DA	USP34	SNP	Missense_Mutation	2	61520625	G	C	42	95
BRCA	TCGA-A7-A0DA	TIA1	SNP	Missense_Mutation	2	70454946	G	A	47	95
BRCA	TCGA-A7-A0DA	CD8A	SNP	Missense_Mutation	2	87016512	C	A	26	57
BRCA	TCGA-A7-A0DA	VWA3B	SNP	Missense_Mutation	2	98834413	G	C	35	46
BRCA	TCGA-A7-A0DA	NSFL1C	SNP	Missense_Mutation	20	1434913	G	A	47	81
BRCA	TCGA-A7-A0DA	COX4I2	SNP	Missense_Mutation	20	30227892	A	G	3	78
BRCA	TCGA-A7-A0DA	CDC25B	SNP	Silent	20	3782017	C	T	30	54
BRCA	TCGA-A7-A0DA	KCNB1	SNP	Silent	20	47989961	C	T	27	22
BRCA	TCGA-A7-A0DA	PI4KA	SNP	Missense_Mutation	22	21173951	C	G	28	78
BRCA	TCGA-A7-A0DA	SMC1B	DEL	Frame_Shift_Del	22	45750849	CTCTTGAAACTTGT	-	20	51
BRCA	TCGA-A7-A0DA	ZBED4	SNP	Silent	22	50279086	G	A	37	44
BRCA	TCGA-A7-A0DA	MST4	SNP	Splice_site	23	131202597	A	G	3	55
BRCA	TCGA-A7-A0DA	FLNA	SNP	Missense_Mutation	23	153586901	C	T	29	85
BRCA	TCGA-A7-A0DA	MXRA5	SNP	Silent	23	3241923	A	G	3	24
BRCA	TCGA-A7-A0DA	UBA1	SNP	Silent	23	47061807	C	T	31	46
BRCA	TCGA-A7-A0DA	TRO	SNP	Missense_Mutation	23	54949939	T	A	49	54
BRCA	TCGA-A7-A0DA	PAGE2	SNP	Silent	23	55117826	A	G	11	45
BRCA	TCGA-A7-A0DA	VCX3B	SNP	Nonsense_Mutation	23	8434392	G	T	41	77
BRCA	TCGA-A7-A0DA	DZIP3	SNP	Missense_Mutation	3	108355480	A	T	4	51
BRCA	TCGA-A7-A0DA	RHO	DEL	In_Frame_Del	3	129251435	CATGGTCATCAT	-	25	49
BRCA	TCGA-A7-A0DA	KLHL24	SNP	Missense_Mutation	3	183390243	A	G	12	93
BRCA	TCGA-A7-A0DA	ECE2	SNP	Missense_Mutation	3	183994723	C	T	19	84
BRCA	TCGA-A7-A0DA	VILL	SNP	Missense_Mutation	3	38039808	C	A	19	67
BRCA	TCGA-A7-A0DA	C3orf77	SNP	Splice_Site	3	44332261	A	T	7	75
BRCA	TCGA-A7-A0DA	LOC100287763	SNP	Missense_Mutation	3	98244069	C	T	29	58
BRCA	TCGA-A7-A0DA	MRFAP1	DEL	Frame_Shift_Del	4	6642829	C	-	18	38
BRCA	TCGA-A7-A0DA	CATSPER3	SNP	Missense_Mutation	5	134346160	G	C	34	66
BRCA	TCGA-A7-A0DA	ATP10B	SNP	Missense_Mutation	5	160063260	C	A	25	57
BRCA	TCGA-A7-A0DA	SIM1	SNP	Missense_Mutation	6	100897470	G	T	46	97
BRCA	TCGA-A7-A0DA	HDAC2	SNP	Missense_Mutation	6	114274578	G	A	45	100
BRCA	TCGA-A7-A0DA	VNN3	SNP	Missense_Mutation	6	133047893	G	C	46	69
BRCA	TCGA-A7-A0DA	HIST1H3A	SNP	Missense_Mutation	6	26020728	C	T	20	94
BRCA	TCGA-A7-A0DA	HIST1H2BB	SNP	Missense_Mutation	6	26043523	C	G	20	70
BRCA	TCGA-A7-A0DA	HIST1H2BB	SNP	Missense_Mutation	6	26043604	C	G	32	98
BRCA	TCGA-A7-A0DA	HIST1H1T	SNP	Missense_Mutation	6	26108318	A	G	10	56
BRCA	TCGA-A7-A0DA	HIST1H3I	SNP	Missense_Mutation	6	27840056	C	A	26	96
BRCA	TCGA-A7-A0DA	SYNGAP1	DEL	Frame_Shift_Del	6	33403338	CCGAAAGAGA	-	26	93
BRCA	TCGA-A7-A0DA	ZNF318	SNP	Missense_Mutation	6	43304909	C	G	20	55
BRCA	TCGA-A7-A0DA	KCNQ5	SNP	Missense_Mutation	6	73904256	G	A	38	56
BRCA	TCGA-A7-A0DA	SRRT	SNP	Missense_Mutation	7	100485995	C	G	24	93
BRCA	TCGA-A7-A0DA	MUC3A	SNP	Silent	7	100552017	C	T	32	49
BRCA	TCGA-A7-A0DA	TSPAN12	SNP	Nonsense_Mutation	7	120428909	G	A	48	98
BRCA	TCGA-A7-A0DA	HYAL4	SNP	Missense_Mutation	7	123516844	G	A	45	66
BRCA	TCGA-A7-A0DA	GIMAP8	SNP	Missense_Mutation	7	150171337	C	T	29	52
BRCA	TCGA-A7-A0DA	DNAH11	DEL	Frame_Shift_Del	7	21775324	GGAAAACCTCTAAT	-	35	54
BRCA	TCGA-A7-A0DA	LSM5	SNP	Missense_Mutation	7	32529929	T	A	61	62
BRCA	TCGA-A7-A0DA	TAF6	SNP	Missense_Mutation	7	99707866	G	A	36	79
BRCA	TCGA-A7-A0DA	PVRIG	SNP	Missense_Mutation	7	99818572	G	A	42	44
BRCA	TCGA-A7-A0DA	CSMD3	SNP	Missense_Mutation	8	113353841	C	G	32	98
BRCA	TCGA-A7-A0DA	KLHL38	SNP	Silent	8	124663967	G	T	47	51
BRCA	TCGA-A7-A0DA	FAM135B	SNP	Nonsense_Mutation	8	139209858	G	A	39	78
BRCA	TCGA-A7-A0DA	PCM1	SNP	Missense_Mutation	8	17869182	C	G	32	98
BRCA	TCGA-A7-A0DA	TMEM66	SNP	Missense_Mutation	8	29924354	G	A	44	83
BRCA	TCGA-A7-A0DA	ADAM2	SNP	Missense_Mutation	8	39634664	C	A	20	52
BRCA	TCGA-A7-A0DA	ST18	DEL	In_Frame_Del	8	53084997	CAGATACATTTTTTT	-	17	52
BRCA	TCGA-A7-A0DA	IMPA1	SNP	Missense_Mutation	8	82598029	C	G	20	48
BRCA	TCGA-A7-A0DA	ZNF462	SNP	Missense_Mutation	9	109773238	A	G	4	42
BRCA	TCGA-A7-A0DA	RGS3	SNP	Missense_Mutation	9	116356374	T	C	58	57
BRCA	TCGA-A7-A0DA	NPDC1	SNP	Missense_Mutation	9	139935565	C	T	21	55
BRCA	TCGA-A7-A0DA	KCNV2	SNP	Silent	9	2729625	C	T	25	38
BRCA	TCGA-A7-A0DA	UBAP2	SNP	Missense_Mutation	9	33935827	C	T	28	43
BRCA	TCGA-A7-A0DA	FGD3	SNP	Missense_Mutation	9	95738615	G	T	36	52
BRCA	TCGA-A7-A0DB	LCE3D	SNP	Silent	1	152552176	G	A	38	36
BRCA	TCGA-A7-A0DB	HEATR1	SNP	Splice_site	1	236715300	T	G	56	75
BRCA	TCGA-A7-A0DB	CCKBR	SNP	Missense_Mutation	11	6291530	G	A	40	49
BRCA	TCGA-A7-A0DB	EHD1	SNP	Silent	11	64627723	G	A	33	81
BRCA	TCGA-A7-A0DB	WNT5B	SNP	Missense_Mutation	12	1740546	C	T	19	67
BRCA	TCGA-A7-A0DB	CD163L1	SNP	Missense_Mutation	12	7527952	G	T	33	55
BRCA	TCGA-A7-A0DB	WNK1	SNP	Missense_Mutation	12	996462	C	G	32	81
BRCA	TCGA-A7-A0DB	FAM10A4	SNP	Missense_Mutation	13	50746931	G	A	37	57
BRCA	TCGA-A7-A0DB	SYNE2	SNP	Missense_Mutation	14	64580096	C	G	32	56
BRCA	TCGA-A7-A0DB	SRSF5	SNP	Silent	14	70238145	A	T	12	50
BRCA	TCGA-A7-A0DB	HEATR4	SNP	Silent	14	73974925	C	T	32	59
BRCA	TCGA-A7-A0DB	HEATR4	SNP	Silent	14	73974931	C	T	29	55
BRCA	TCGA-A7-A0DB	YLPM1	SNP	Missense_Mutation	14	75283664	G	C	41	100
BRCA	TCGA-A7-A0DB	KRT25	SNP	Missense_Mutation	17	38907252	C	A	27	84
BRCA	TCGA-A7-A0DB	TANC2	SNP	Silent	17	61315386	A	G	4	42
BRCA	TCGA-A7-A0DB	ADNP2	SNP	Missense_Mutation	18	77895086	C	G	32	70
BRCA	TCGA-A7-A0DB	ZNF506	SNP	Missense_Mutation	19	19906463	T	C	49	29
BRCA	TCGA-A7-A0DB	ZNF432	SNP	Missense_Mutation	19	52537525	C	G	32	53
BRCA	TCGA-A7-A0DB	ZNF749	SNP	Silent	19	57956493	G	A	33	48
BRCA	TCGA-A7-A0DB	FBN3	SNP	Missense_Mutation	19	8130997	C	T	31	55
BRCA	TCGA-A7-A0DB	SLC9A2	SNP	Missense_Mutation	2	103300760	G	T	46	81
BRCA	TCGA-A7-A0DB	SCN2A	SNP	Missense_Mutation	2	166245948	C	A	17	100
BRCA	TCGA-A7-A0DB	NGEF	SNP	Silent	2	233839577	A	G	4	41
BRCA	TCGA-A7-A0DB	PLB1	SNP	Splice_Site	2	28827627	G	T	44	79
BRCA	TCGA-A7-A0DB	LPIN3	SNP	Silent	20	39987407	G	A	47	52
BRCA	TCGA-A7-A0DB	TMEM189-UBE2V1	SNP	Missense_Mutation	20	48700722	A	C	3	65
BRCA	TCGA-A7-A0DB	NUDT11	SNP	Silent	23	51238952	C	T	30	56
BRCA	TCGA-A7-A0DB	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A7-A0DB	ACAA1	SNP	Nonsense_Mutation	3	38175453	G	A	47	82
BRCA	TCGA-A7-A0DB	NUDT6	SNP	Silent	4	123814028	A	G	16	60
BRCA	TCGA-A7-A0DB	MAP3K1	INS	Frame_Shift_Ins	5	56167801	-	T	32	81
BRCA	TCGA-A7-A0DB	MAP3K1	INS	Frame_Shift_Ins	5	56174851	-	GC	15	55
BRCA	TCGA-A7-A0DB	BDP1	SNP	Missense_Mutation	5	70782424	A	G	9	62
BRCA	TCGA-A7-A0DB	HIST1H2AH	SNP	Silent	6	27115267	G	A	33	71
BRCA	TCGA-A7-A0DB	C7orf53	SNP	Silent	7	112124979	C	G	23	28
BRCA	TCGA-A7-A0DB	ZKSCAN1	SNP	Nonsense_Mutation	7	99621381	G	A	42	77
BRCA	TCGA-A7-A0DB	TRAPPC9	SNP	Silent	8	141231675	G	A	45	68
BRCA	TCGA-A7-A0DB	LRRC14	SNP	Missense_Mutation	8	145745252	G	A	38	54
BRCA	TCGA-A7-A13D	TTF2	SNP	Missense_Mutation	1	117620594	G	A	39	92
BRCA	TCGA-A7-A13D	FLG2	SNP	Nonsense_Mutation	1	152329634	T	A	63	56
BRCA	TCGA-A7-A13D	SPEN	SNP	Silent	1	16261459	C	T	24	49
BRCA	TCGA-A7-A13D	STX6	SNP	Missense_Mutation	1	180959152	G	C	45	70
BRCA	TCGA-A7-A13D	ATF3	SNP	Silent	1	212791561	G	A	39	40
BRCA	TCGA-A7-A13D	EPHB2	SNP	Missense_Mutation	1	23236889	T	G	63	44
BRCA	TCGA-A7-A13D	ARID4B	SNP	Missense_Mutation	1	235345422	T	G	64	73
BRCA	TCGA-A7-A13D	RGS7	SNP	Nonsense_Mutation	1	240966282	G	C	48	87
BRCA	TCGA-A7-A13D	IL22RA1	SNP	Missense_Mutation	1	24448186	G	C	41	63
BRCA	TCGA-A7-A13D	BAI2	SNP	Missense_Mutation	1	32203298	C	G	25	74
BRCA	TCGA-A7-A13D	SYNC	SNP	Missense_Mutation	1	33160479	A	G	6	78
BRCA	TCGA-A7-A13D	MACF1	SNP	Missense_Mutation	1	39799297	C	T	20	80
BRCA	TCGA-A7-A13D	LRRC8C	SNP	Missense_Mutation	1	90152042	G	A	40	86
BRCA	TCGA-A7-A13D	KIAA1217	DEL	Frame_Shift_Del	10	24722118	GTAAG	-	48	98
BRCA	TCGA-A7-A13D	APBB1IP	SNP	Missense_Mutation	10	26781288	G	A	48	83
BRCA	TCGA-A7-A13D	FAM21C	SNP	Missense_Mutation	10	46261214	T	A	54	46
BRCA	TCGA-A7-A13D	WDFY4	SNP	Missense_Mutation	10	49939380	T	C	53	88
BRCA	TCGA-A7-A13D	PPA1	SNP	Missense_Mutation	10	71978538	C	A	18	100
BRCA	TCGA-A7-A13D	PRF1	SNP	Silent	10	72357869	G	A	36	40
BRCA	TCGA-A7-A13D	O3FAR1	SNP	Silent	10	95326768	C	T	23	45
BRCA	TCGA-A7-A13D	MMP13	SNP	Missense_Mutation	11	102826194	G	C	48	24
BRCA	TCGA-A7-A13D	OR52D1	SNP	Missense_Mutation	11	5510400	G	C	36	56
BRCA	TCGA-A7-A13D	OR5T3	SNP	Silent	11	56020650	A	G	3	49
BRCA	TCGA-A7-A13D	RASSF7	SNP	Missense_Mutation	11	561784	G	C	42	47
BRCA	TCGA-A7-A13D	OVCH2	SNP	Silent	11	7723282	G	C	34	55
BRCA	TCGA-A7-A13D	ACACB	SNP	Missense_Mutation	12	109654723	A	T	12	91
BRCA	TCGA-A7-A13D	HCAR1	SNP	Silent	12	123214320	G	A	37	32
BRCA	TCGA-A7-A13D	RARG	SNP	Nonsense_Mutation	12	53609502	G	C	48	71
BRCA	TCGA-A7-A13D	PCBP2	SNP	Missense_Mutation	12	53853067	C	G	28	97
BRCA	TCGA-A7-A13D	PTPRB	SNP	Silent	12	70974955	G	C	45	62
BRCA	TCGA-A7-A13D	CCDC168	SNP	Missense_Mutation	13	103384955	C	A	28	45
BRCA	TCGA-A7-A13D	RASA3	SNP	Missense_Mutation	13	114773080	G	C	33	57
BRCA	TCGA-A7-A13D	USPL1	SNP	Missense_Mutation	13	31205414	C	A	28	60
BRCA	TCGA-A7-A13D	VWA8	DEL	In_Frame_Del	13	42263507	CAA	-	21	95
BRCA	TCGA-A7-A13D	HEATR5A	SNP	Missense_Mutation	14	31774324	C	T	23	89
BRCA	TCGA-A7-A13D	ARHGAP11A	SNP	Missense_Mutation	15	32929244	A	G	10	46
BRCA	TCGA-A7-A13D	STARD9	SNP	Silent	15	42976692	C	T	22	52
BRCA	TCGA-A7-A13D	PTPLAD1	DEL	Splice_site	15	65851018	GAA	-	41	76
BRCA	TCGA-A7-A13D	SIAH1	SNP	Nonsense_Mutation	16	48396330	G	A	45	100
BRCA	TCGA-A7-A13D	KLHDC4	SNP	Missense_Mutation	16	87742952	G	A	39	72
BRCA	TCGA-A7-A13D	TMEM220	SNP	Splice_Site	17	10632347	C	A	18	72
BRCA	TCGA-A7-A13D	NOS2	SNP	Missense_Mutation	17	26101297	A	C	1	91
BRCA	TCGA-A7-A13D	NR1D1	SNP	Silent	17	38252225	T	A	59	46
BRCA	TCGA-A7-A13D	AOC3	SNP	Missense_Mutation	17	41004004	C	T	22	84
BRCA	TCGA-A7-A13D	TP53	SNP	Nonsense_Mutation	17	7578188	C	A	29	83
BRCA	TCGA-A7-A13D	SGSH	SNP	Silent	17	78188424	G	C	45	72
BRCA	TCGA-A7-A13D	CD97	SNP	Nonsense_Mutation	19	14508566	G	A	47	62
BRCA	TCGA-A7-A13D	EMR2	SNP	Nonsense_Mutation	19	14876520	C	T	21	52
BRCA	TCGA-A7-A13D	ZNF615	SNP	Nonsense_Mutation	19	52497053	T	A	62	82
BRCA	TCGA-A7-A13D	EPN1	SNP	Silent	19	56200357	C	T	18	59
BRCA	TCGA-A7-A13D	RANBP3	SNP	Silent	19	5917815	G	A	47	48
BRCA	TCGA-A7-A13D	DENND1C	SNP	Missense_Mutation	19	6476917	G	A	38	71
BRCA	TCGA-A7-A13D	FKBP7	SNP	Missense_Mutation	2	179343153	C	G	32	60
BRCA	TCGA-A7-A13D	DNAH7	SNP	Missense_Mutation	2	196765097	C	T	27	98
BRCA	TCGA-A7-A13D	SLC23A3	SNP	Missense_Mutation	2	220032945	G	C	36	59
BRCA	TCGA-A7-A13D	NGEF	SNP	Silent	2	233785249	G	A	37	42
BRCA	TCGA-A7-A13D	EML6	SNP	Missense_Mutation	2	55080895	C	G	17	57
BRCA	TCGA-A7-A13D	AUP1	SNP	Splice_site	2	74756062	G	A	42	95
BRCA	TCGA-A7-A13D	DNAH6	SNP	Missense_Mutation	2	84930672	G	A	33	95
BRCA	TCGA-A7-A13D	IGKV3D-20	SNP	Missense_Mutation	2	90078144	C	A	18	54
BRCA	TCGA-A7-A13D	KIF3B	SNP	Missense_Mutation	20	30904100	A	T	1	62
BRCA	TCGA-A7-A13D	CDH26	SNP	Missense_Mutation	20	58547126	G	A	41	70
BRCA	TCGA-A7-A13D	ARFGAP1	SNP	Missense_Mutation	20	61907987	C	A	26	96
BRCA	TCGA-A7-A13D	UMODL1	SNP	Splice_site	21	43542941	G	T	44	50
BRCA	TCGA-A7-A13D	SHROOM2	SNP	Missense_Mutation	23	9864381	G	C	42	49
BRCA	TCGA-A7-A13D	PCDH19	SNP	Missense_Mutation	23	99551448	G	T	39	96
BRCA	TCGA-A7-A13D	LNP1	SNP	Missense_Mutation	3	100170641	C	T	23	53
BRCA	TCGA-A7-A13D	ADCY5	SNP	Splice_site	3	123021902	C	A	24	96
BRCA	TCGA-A7-A13D	EHHADH	SNP	Missense_Mutation	3	184911054	C	G	20	86
BRCA	TCGA-A7-A13D	FYTTD1	SNP	Silent	3	197505308	G	A	36	52
BRCA	TCGA-A7-A13D	CELSR3	SNP	Missense_Mutation	3	48694701	C	T	19	95
BRCA	TCGA-A7-A13D	RASL11B	SNP	Missense_Mutation	4	53731906	G	C	46	100
BRCA	TCGA-A7-A13D	CRMP1	SNP	Silent	4	5844877	C	T	30	46
BRCA	TCGA-A7-A13D	PRDM8	DEL	Frame_Shift_Del	4	81122507	GC	-	42	100
BRCA	TCGA-A7-A13D	AFF4	SNP	Missense_Mutation	5	132228002	G	C	37	53
BRCA	TCGA-A7-A13D	FAM13B	SNP	Missense_Mutation	5	137289955	G	A	41	91
BRCA	TCGA-A7-A13D	NMUR2	SNP	Missense_Mutation	5	151784051	C	A	28	54
BRCA	TCGA-A7-A13D	C5orf4	SNP	Missense_Mutation	5	154199668	C	G	30	59
BRCA	TCGA-A7-A13D	MYO10	DEL	Frame_Shift_Del	5	16680064	CTTGAATCAG	-	32	100
BRCA	TCGA-A7-A13D	CEP72	SNP	Missense_Mutation	5	653161	C	A	25	75
BRCA	TCGA-A7-A13D	F2R	SNP	Missense_Mutation	5	76029028	C	G	31	52
BRCA	TCGA-A7-A13D	CAST	SNP	Missense_Mutation	5	96079350	C	T	31	70
BRCA	TCGA-A7-A13D	RGS17	DEL	Frame_Shift_Del	6	153345454	A	-	5	49
BRCA	TCGA-A7-A13D	RPS6KA2	SNP	Missense_Mutation	6	166918092	G	C	45	52
BRCA	TCGA-A7-A13D	TUBB	SNP	Missense_Mutation	6	30691194	G	A	48	94
BRCA	TCGA-A7-A13D	GCLC	SNP	Missense_Mutation	6	53373506	C	G	26	100
BRCA	TCGA-A7-A13D	PHF14	SNP	Silent	7	11022150	A	G	3	59
BRCA	TCGA-A7-A13D	FLNC	SNP	Silent	7	128485245	C	T	30	51
BRCA	TCGA-A7-A13D	TSGA13	SNP	Missense_Mutation	7	130357607	T	A	50	49
BRCA	TCGA-A7-A13D	PAXIP1	SNP	Splice_Site	7	154760837	C	T	32	91
BRCA	TCGA-A7-A13D	RBM33	SNP	Missense_Mutation	7	155473489	G	A	37	76
BRCA	TCGA-A7-A13D	UBE3C	SNP	Silent	7	157046809	C	G	30	51
BRCA	TCGA-A7-A13D	NUPL2	SNP	Missense_Mutation	7	23239963	G	C	47	55
BRCA	TCGA-A7-A13D	SDK1	SNP	Missense_Mutation	7	4273040	C	T	19	50
BRCA	TCGA-A7-A13D	RUNDC3B	SNP	Missense_Mutation	7	87258230	G	T	44	71
BRCA	TCGA-A7-A13D	HAS2	SNP	Missense_Mutation	8	122626391	C	A	26	79
BRCA	TCGA-A7-A13D	PLEC	SNP	Missense_Mutation	8	144995865	C	G	32	58
BRCA	TCGA-A7-A13D	MAK16	SNP	Missense_Mutation	8	33354179	G	C	37	88
BRCA	TCGA-A7-A13D	PRKDC	SNP	Missense_Mutation	8	48730110	G	C	33	90
BRCA	TCGA-A7-A13D	POLE3	DEL	In_Frame_Del	9	116171999	GTT	-	36	57
BRCA	TCGA-A7-A13D	ZNF79	SNP	Missense_Mutation	9	130207444	G	C	40	47
BRCA	TCGA-A7-A13D	TRPM3	SNP	Missense_Mutation	9	73399144	T	C	52	81
BRCA	TCGA-A7-A13D	VPS13A	SNP	Silent	9	79890418	A	G	7	48
BRCA	TCGA-A7-A13F	OLFML2B	SNP	Missense_Mutation	1	161954711	G	A	38	58
BRCA	TCGA-A7-A13F	DDR2	SNP	Missense_Mutation	1	162743378	G	C	33	66
BRCA	TCGA-A7-A13F	OBSCN	SNP	Splice_site	1	228506585	T	C	59	66
BRCA	TCGA-A7-A13F	NID1	SNP	Silent	1	236157078	G	A	37	50
BRCA	TCGA-A7-A13F	KCNIP2	SNP	Missense_Mutation	10	103588945	C	T	31	97
BRCA	TCGA-A7-A13F	LOC100128511	SNP	Silent	10	21462603	A	G	8	33
BRCA	TCGA-A7-A13F	MUC2	SNP	Missense_Mutation	11	1101090	G	A	40	50
BRCA	TCGA-A7-A13F	FOLH1	SNP	Missense_Mutation	11	49221856	T	C	52	55
BRCA	TCGA-A7-A13F	OR5R1	SNP	Missense_Mutation	11	56185039	C	T	27	55
BRCA	TCGA-A7-A13F	BAZ2A	SNP	Missense_Mutation	12	56992725	C	A	18	97
BRCA	TCGA-A7-A13F	RPGRIP1	SNP	Missense_Mutation	14	21796707	A	T	8	70
BRCA	TCGA-A7-A13F	LTBP2	SNP	Silent	14	74975371	G	A	40	42
BRCA	TCGA-A7-A13F	SMCR8	SNP	Missense_Mutation	17	18221324	G	A	42	52
BRCA	TCGA-A7-A13F	CAMKK1	SNP	Missense_Mutation	17	3776749	T	G	50	86
BRCA	TCGA-A7-A13F	KRTAP4-6	SNP	Missense_Mutation	17	39296423	C	T	19	38
BRCA	TCGA-A7-A13F	GP1BA	SNP	Silent	17	4837763	C	T	32	63
BRCA	TCGA-A7-A13F	C17orf101	SNP	Missense_Mutation	17	80369359	T	A	59	56
BRCA	TCGA-A7-A13F	DPY19L3	SNP	Missense_Mutation	19	32968544	G	A	33	100
BRCA	TCGA-A7-A13F	SPHK2	SNP	Silent	19	49129267	C	T	27	55
BRCA	TCGA-A7-A13F	CNOT3	SNP	Missense_Mutation	19	54650352	G	C	45	89
BRCA	TCGA-A7-A13F	VAV1	SNP	Missense_Mutation	19	6833625	G	A	37	69
BRCA	TCGA-A7-A13F	YSK4	SNP	Missense_Mutation	2	135745195	G	C	34	53
BRCA	TCGA-A7-A13F	ATAD2B	SNP	Missense_Mutation	2	24092569	C	A	32	87
BRCA	TCGA-A7-A13F	BIRC6	SNP	Missense_Mutation	2	32822992	G	T	36	99
BRCA	TCGA-A7-A13F	PRKCE	SNP	Missense_Mutation	2	46070194	C	T	31	83
BRCA	TCGA-A7-A13F	SNAI1	SNP	Missense_Mutation	20	48604456	C	T	23	71
BRCA	TCGA-A7-A13F	WDR44	SNP	Missense_Mutation	23	117540916	C	T	25	100
BRCA	TCGA-A7-A13F	TRPC1	SNP	Missense_Mutation	3	142503607	G	A	44	100
BRCA	TCGA-A7-A13F	DSPP	SNP	Missense_Mutation	4	88535329	T	A	59	60
BRCA	TCGA-A7-A13F	FAM169A	DEL	In_Frame_Del	5	74077801	CAT	-	21	46
BRCA	TCGA-A7-A13F	TFAP2A	SNP	Missense_Mutation	6	10410138	A	G	10	88
BRCA	TCGA-A7-A13F	FAM26D	SNP	Missense_Mutation	6	116879271	T	C	61	80
BRCA	TCGA-A7-A13F	FAM46A	DEL	Frame_Shift_Del	6	82459981	TC	-	58	78
BRCA	TCGA-A7-A13F	ABCB8	SNP	Missense_Mutation	7	150741305	G	T	43	50
BRCA	TCGA-A7-A13F	PEX2	SNP	Missense_Mutation	8	77895909	C	T	19	83
BRCA	TCGA-A7-A13G	PLEKHA6	SNP	Missense_Mutation	1	204210567	T	C	54	56
BRCA	TCGA-A7-A13G	GBP5	SNP	Missense_Mutation	1	89732807	T	C	56	50
BRCA	TCGA-A7-A13G	ASAH2B	SNP	Silent	10	52502735	C	T	29	65
BRCA	TCGA-A7-A13G	KCNK4	SNP	Missense_Mutation	11	64064626	C	T	27	81
BRCA	TCGA-A7-A13G	FAT3	SNP	Missense_Mutation	11	92531298	G	T	33	85
BRCA	TCGA-A7-A13G	CD163L1	SNP	Silent	12	7550864	G	A	34	53
BRCA	TCGA-A7-A13G	AGBL1	SNP	Silent	15	87097616	C	T	28	59
BRCA	TCGA-A7-A13G	RABEP1	DEL	Frame_Shift_Del	17	5266266	AC	-	2	62
BRCA	TCGA-A7-A13G	ZNF180	SNP	Missense_Mutation	19	44981511	A	T	3	90
BRCA	TCGA-A7-A13G	VWC2L	SNP	Missense_Mutation	2	215440482	G	A	39	98
BRCA	TCGA-A7-A13G	PPP1R7	SNP	Missense_Mutation	2	242098694	G	A	33	100
BRCA	TCGA-A7-A13G	ARHGEF33	SNP	Silent	2	39199061	G	A	45	76
BRCA	TCGA-A7-A13G	DYSF	SNP	Missense_Mutation	2	71891541	G	T	38	71
BRCA	TCGA-A7-A13G	F8	SNP	Silent	23	154159395	C	T	29	46
BRCA	TCGA-A7-A13G	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A7-A13G	PTPN23	SNP	Missense_Mutation	3	47451185	G	C	34	93
BRCA	TCGA-A7-A13G	LRBA	SNP	Missense_Mutation	4	151223869	C	G	30	98
BRCA	TCGA-A7-A13G	CSN1S1	SNP	Missense_Mutation	4	70810640	G	A	48	33
BRCA	TCGA-A7-A13G	CDC25C	SNP	Missense_Mutation	5	137666850	G	A	45	73
BRCA	TCGA-A7-A13G	MEF2C	SNP	Silent	5	88047758	G	A	35	98
BRCA	TCGA-A7-A13G	CEP85L	SNP	Missense_Mutation	6	118953648	C	G	26	87
BRCA	TCGA-A7-A13G	FNDC1	SNP	Silent	6	159635993	C	T	17	66
BRCA	TCGA-A7-A13G	MUC12	SNP	Missense_Mutation	7	100643689	C	G	17	52
BRCA	TCGA-A7-A13G	NPC1L1	SNP	Missense_Mutation	7	44579574	C	T	27	75
BRCA	TCGA-A7-A13G	GPT	SNP	Silent	8	145730243	G	T	40	14
BRCA	TCGA-A7-A13G	CHD7	SNP	Missense_Mutation	8	61777594	T	A	51	92
BRCA	TCGA-A7-A26E	HRNR	SNP	Silent	1	152189272	G	A	40	28
BRCA	TCGA-A7-A26E	FLG	SNP	Silent	1	152282658	G	A	39	35
BRCA	TCGA-A7-A26E	ZYG11A	SNP	Silent	1	53326444	G	A	45	95
BRCA	TCGA-A7-A26E	FBXW4	SNP	Silent	10	103371430	G	A	40	39
BRCA	TCGA-A7-A26E	HECTD2	SNP	Silent	10	93256090	C	T	32	63
BRCA	TCGA-A7-A26E	CEP55	SNP	Silent	10	95279501	A	G	4	50
BRCA	TCGA-A7-A26E	E2F8	SNP	Missense_Mutation	11	19256462	C	T	30	84
BRCA	TCGA-A7-A26E	BRAP	SNP	Missense_Mutation	12	112121094	C	T	29	94
BRCA	TCGA-A7-A26E	KDM2B	SNP	Silent	12	121878877	C	A	25	51
BRCA	TCGA-A7-A26E	TPH2	SNP	Missense_Mutation	12	72338138	A	G	9	90
BRCA	TCGA-A7-A26E	B3GALTL	SNP	Silent	13	31897924	C	T	31	45
BRCA	TCGA-A7-A26E	FAM179B	SNP	Missense_Mutation	14	45513889	G	A	45	83
BRCA	TCGA-A7-A26E	CASC5	SNP	Nonsense_Mutation	15	40913336	C	T	29	55
BRCA	TCGA-A7-A26E	CSPG4	SNP	Missense_Mutation	15	75967903	C	G	20	97
BRCA	TCGA-A7-A26E	USP32	SNP	Missense_Mutation	17	58348824	A	G	4	91
BRCA	TCGA-A7-A26E	ABCA8	SNP	Missense_Mutation	17	66871785	C	T	31	79
BRCA	TCGA-A7-A26E	SDK2	SNP	Missense_Mutation	17	71375348	C	A	30	97
BRCA	TCGA-A7-A26E	FHOD3	SNP	Missense_Mutation	18	34359414	G	A	37	76
BRCA	TCGA-A7-A26E	ARHGAP28	SNP	Silent	18	6890051	C	A	26	52
BRCA	TCGA-A7-A26E	PLVAP	SNP	Missense_Mutation	19	17476399	G	T	38	49
BRCA	TCGA-A7-A26E	LRP1B	SNP	Silent	2	141283540	G	A	33	66
BRCA	TCGA-A7-A26E	NFE2L2	SNP	Splice_Site	2	178098803	C	T	18	98
BRCA	TCGA-A7-A26E	PRKAG3	SNP	Missense_Mutation	2	219692583	C	T	29	95
BRCA	TCGA-A7-A26E	FAM134A	SNP	Silent	2	220045923	G	A	33	82
BRCA	TCGA-A7-A26E	PCGF1	SNP	Silent	2	74734188	G	A	45	50
BRCA	TCGA-A7-A26E	HK2	SNP	Missense_Mutation	2	75117929	C	T	26	94
BRCA	TCGA-A7-A26E	RUNX1	INS	Frame_Shift_Ins	21	36252994	-	C	50	92
BRCA	TCGA-A7-A26E	UMODL1	SNP	Missense_Mutation	21	43496126	C	T	30	81
BRCA	TCGA-A7-A26E	SFI1	SNP	Missense_Mutation	22	32003986	G	T	46	55
BRCA	TCGA-A7-A26E	TOM1	SNP	Missense_Mutation	22	35713945	C	T	19	100
BRCA	TCGA-A7-A26E	RBMXL3	SNP	Missense_Mutation	23	114424746	G	A	37	55
BRCA	TCGA-A7-A26E	HMGB3	SNP	Splice_site	23	150155775	G	T	35	80
BRCA	TCGA-A7-A26E	KDM5C	INS	In_Frame_Ins	23	53224485	-	GGT	29	57
BRCA	TCGA-A7-A26E	KDM5C	INS	Frame_Shift_Ins	23	53224486	-	CCTGTCG	7	59
BRCA	TCGA-A7-A26E	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A7-A26E	SLC10A4	SNP	Missense_Mutation	4	48486056	G	A	38	48
BRCA	TCGA-A7-A26E	CWC27	SNP	Missense_Mutation	5	64267547	G	A	33	64
BRCA	TCGA-A7-A26E	ANKRD34B	SNP	Silent	5	79855107	G	A	40	53
BRCA	TCGA-A7-A26E	SLC4A2	SNP	Missense_Mutation	7	150773425	G	A	37	80
BRCA	TCGA-A7-A26E	QSOX2	SNP	Missense_Mutation	9	139101011	C	T	19	93
BRCA	TCGA-A7-A26F	ASH1L	SNP	Missense_Mutation	1	155448988	G	A	46	84
BRCA	TCGA-A7-A26F	CACYBP	SNP	Silent	1	174977786	G	A	47	40
BRCA	TCGA-A7-A26F	ATP6V1G3	SNP	Missense_Mutation	1	198498240	C	A	32	87
BRCA	TCGA-A7-A26F	ABCA4	SNP	Silent	1	94522223	G	A	33	56
BRCA	TCGA-A7-A26F	PTEN	DEL	Frame_Shift_Del	10	89690810	GA	-	45	98
BRCA	TCGA-A7-A26F	ACTN3	SNP	Silent	11	66319055	G	A	40	81
BRCA	TCGA-A7-A26F	STX2	SNP	Missense_Mutation	12	131306288	C	G	29	85
BRCA	TCGA-A7-A26F	IFNG	SNP	Missense_Mutation	12	68551735	G	C	48	50
BRCA	TCGA-A7-A26F	ABCC4	SNP	Silent	13	95830023	G	A	33	63
BRCA	TCGA-A7-A26F	RBM23	INS	In_Frame_Ins	14	23371265	-	GCA	39	47
BRCA	TCGA-A7-A26F	POLR2C	SNP	Nonsense_Mutation	16	57504903	G	T	41	96
BRCA	TCGA-A7-A26F	ALOX15	SNP	Missense_Mutation	17	4540413	G	C	41	58
BRCA	TCGA-A7-A26F	GPRC5C	SNP	Silent	17	72436047	C	T	18	85
BRCA	TCGA-A7-A26F	TP53	SNP	Missense_Mutation	17	7578403	C	A	25	84
BRCA	TCGA-A7-A26F	NWD1	SNP	Nonsense_Mutation	19	16926010	G	A	47	64
BRCA	TCGA-A7-A26F	MEGF8	SNP	Missense_Mutation	19	42841015	C	T	19	79
BRCA	TCGA-A7-A26F	MYBPC2	SNP	Missense_Mutation	19	50939080	G	A	40	32
BRCA	TCGA-A7-A26F	EPB41L5	SNP	Missense_Mutation	2	120831738	C	T	31	81
BRCA	TCGA-A7-A26F	CHN1	SNP	Missense_Mutation	2	175742762	C	T	29	100
BRCA	TCGA-A7-A26F	AQP12A	SNP	Missense_Mutation	2	241631392	C	T	26	56
BRCA	TCGA-A7-A26F	SERPINA7	SNP	Missense_Mutation	23	105278233	A	T	3	69
BRCA	TCGA-A7-A26F	RBM41	SNP	Silent	23	106310811	C	G	31	50
BRCA	TCGA-A7-A26F	MYLK	SNP	Missense_Mutation	3	123457877	C	T	19	88
BRCA	TCGA-A7-A26F	RFC1	SNP	Missense_Mutation	4	39347084	G	A	39	51
BRCA	TCGA-A7-A26F	CEP120	SNP	Missense_Mutation	5	122713082	G	A	39	66
BRCA	TCGA-A7-A26F	LARS	SNP	Missense_Mutation	5	145531429	T	A	54	91
BRCA	TCGA-A7-A26F	PIK3R1	INS	In_Frame_Ins	5	67589611	-	AAAAGT	1	64
BRCA	TCGA-A7-A26F	HS3ST5	SNP	Missense_Mutation	6	114378876	C	T	18	100
BRCA	TCGA-A7-A26F	FAM184A	SNP	Missense_Mutation	6	119301436	G	A	40	85
BRCA	TCGA-A7-A26F	GPR22	SNP	Missense_Mutation	7	107115253	C	A	25	100
BRCA	TCGA-A7-A26F	PIP	SNP	Silent	7	142829239	C	T	21	50
BRCA	TCGA-A7-A26F	COL14A1	SNP	Splice_Site	8	121237326	G	A	35	87
BRCA	TCGA-A7-A26G	FLG2	SNP	Missense_Mutation	1	152327936	C	A	21	53
BRCA	TCGA-A7-A26G	FAM5C	SNP	Missense_Mutation	1	190067488	G	T	35	82
BRCA	TCGA-A7-A26G	PTEN	SNP	Missense_Mutation	10	89692920	T	A	49	88
BRCA	TCGA-A7-A26G	MUC5B	SNP	Silent	11	1266561	G	A	41	44
BRCA	TCGA-A7-A26G	FLI1	SNP	Silent	11	128680835	C	A	22	45
BRCA	TCGA-A7-A26G	OR4C15	SNP	Missense_Mutation	11	55322874	G	T	33	49
BRCA	TCGA-A7-A26G	OR5T1	SNP	Missense_Mutation	11	56043960	T	A	51	50
BRCA	TCGA-A7-A26G	AHNAK	SNP	Silent	11	62300539	C	A	30	42
BRCA	TCGA-A7-A26G	PDZRN4	SNP	Silent	12	41967119	C	T	19	46
BRCA	TCGA-A7-A26G	REC8	SNP	Missense_Mutation	14	24649088	G	A	46	57
BRCA	TCGA-A7-A26G	OTUD7A	SNP	Missense_Mutation	15	31776558	C	T	30	94
BRCA	TCGA-A7-A26G	SCAMP2	SNP	Silent	15	75142959	G	A	46	42
BRCA	TCGA-A7-A26G	TEKT5	SNP	Silent	16	10788509	C	T	27	30
BRCA	TCGA-A7-A26G	ACSF3	SNP	Missense_Mutation	16	89220512	C	G	23	86
BRCA	TCGA-A7-A26G	SPAG5	SNP	Missense_Mutation	17	26912598	G	A	41	62
BRCA	TCGA-A7-A26G	CDK12	INS	Splice_Site	17	37666015	-	T	44	100
BRCA	TCGA-A7-A26G	TP53	SNP	Missense_Mutation	17	7578191	A	G	15	88
BRCA	TCGA-A7-A26G	ROCK1	SNP	Missense_Mutation	18	18534990	C	T	29	100
BRCA	TCGA-A7-A26G	LGALS13	SNP	Missense_Mutation	19	40095975	G	A	45	48
BRCA	TCGA-A7-A26G	FCGBP	SNP	Missense_Mutation	19	40399508	C	T	23	72
BRCA	TCGA-A7-A26G	KIR2DL3	SNP	Missense_Mutation	19	55253450	T	G	55	48
BRCA	TCGA-A7-A26G	EPS8L1	SNP	Splice_site	19	55598981	G	A	45	81
BRCA	TCGA-A7-A26G	ZNF470	SNP	Silent	19	57089783	C	A	22	45
BRCA	TCGA-A7-A26G	CNTNAP5	SNP	Missense_Mutation	2	125530458	C	A	17	77
BRCA	TCGA-A7-A26G	SCN1A	SNP	Missense_Mutation	2	166912953	C	T	29	68
BRCA	TCGA-A7-A26G	UBE2F	SNP	Missense_Mutation	2	238933990	A	C	1	68
BRCA	TCGA-A7-A26G	SRSF7	DEL	Frame_Shift_Del	2	38976661	AAAT	-	1	55
BRCA	TCGA-A7-A26G	SEMA4C	SNP	Missense_Mutation	2	97531630	A	G	6	86
BRCA	TCGA-A7-A26G	RNF24	SNP	Missense_Mutation	20	3944669	G	A	45	56
BRCA	TCGA-A7-A26G	PCBP3	SNP	Silent	21	47349884	C	T	31	65
BRCA	TCGA-A7-A26G	MTM1	SNP	Missense_Mutation	23	149787533	C	A	28	94
BRCA	TCGA-A7-A26G	GRIPAP1	SNP	Silent	23	48838243	G	C	45	44
BRCA	TCGA-A7-A26G	GPR174	SNP	Missense_Mutation	23	78427390	A	T	6	87
BRCA	TCGA-A7-A26G	PCCB	SNP	Silent	3	135974724	C	T	29	62
BRCA	TCGA-A7-A26G	VEPH1	SNP	Missense_Mutation	3	156979018	C	G	30	87
BRCA	TCGA-A7-A26G	EPHB3	SNP	Missense_Mutation	3	184298863	T	A	54	73
BRCA	TCGA-A7-A26G	LPP	SNP	Missense_Mutation	3	188202440	C	G	32	68
BRCA	TCGA-A7-A26G	MUC4	SNP	Missense_Mutation	3	195508692	G	C	48	45
BRCA	TCGA-A7-A26G	OSBPL10	SNP	Silent	3	31725409	G	A	47	57
BRCA	TCGA-A7-A26G	ARL6IP5	INS	Splice_Site	3	69134375	-	T	44	79
BRCA	TCGA-A7-A26G	COL25A1	SNP	Splice_Site	4	109817822	C	G	18	80
BRCA	TCGA-A7-A26G	DNAH5	SNP	Silent	5	13901544	G	A	37	46
BRCA	TCGA-A7-A26G	NSD1	SNP	Missense_Mutation	5	176637364	G	A	34	69
BRCA	TCGA-A7-A26G	PDE10A	SNP	Missense_Mutation	6	165846532	C	A	18	100
BRCA	TCGA-A7-A26G	PPARD	SNP	Silent	6	35393844	G	A	35	59
BRCA	TCGA-A7-A26G	GFRAL	SNP	Silent	6	55216082	G	A	47	55
BRCA	TCGA-A7-A26G	ABCA13	SNP	Missense_Mutation	7	48318080	T	C	52	61
BRCA	TCGA-A7-A26G	PCLO	SNP	Silent	7	82579110	A	T	5	36
BRCA	TCGA-A7-A26G	ASNS	SNP	Missense_Mutation	7	97498300	A	G	2	68
BRCA	TCGA-A7-A26G	TRAPPC9	SNP	Missense_Mutation	8	140744326	C	T	27	77
BRCA	TCGA-A7-A26G	C9orf142	SNP	Missense_Mutation	9	139887830	C	A	22	38
BRCA	TCGA-A7-A26H	DNAJC16	SNP	Nonsense_Mutation	1	15890821	C	G	29	75
BRCA	TCGA-A7-A26H	NADK	SNP	Missense_Mutation	1	1688035	C	T	19	86
BRCA	TCGA-A7-A26H	ASTN1	SNP	Nonsense_Mutation	1	176915214	G	T	42	59
BRCA	TCGA-A7-A26H	XPR1	SNP	Missense_Mutation	1	180651527	A	G	10	79
BRCA	TCGA-A7-A26H	CDC42BPA	SNP	Missense_Mutation	1	227261635	C	T	32	97
BRCA	TCGA-A7-A26H	ST3GAL3	SNP	Missense_Mutation	1	44303968	C	T	19	63
BRCA	TCGA-A7-A26H	JUN	SNP	Nonsense_Mutation	1	59248385	C	A	31	96
BRCA	TCGA-A7-A26H	ZNHIT6	SNP	Missense_Mutation	1	86173517	C	G	32	61
BRCA	TCGA-A7-A26H	MKI67	SNP	Missense_Mutation	10	129913274	T	G	52	48
BRCA	TCGA-A7-A26H	MUC2	SNP	Missense_Mutation	11	1093757	C	T	24	73
BRCA	TCGA-A7-A26H	SLC6A5	SNP	Missense_Mutation	11	20636348	G	T	41	80
BRCA	TCGA-A7-A26H	KCNQ1	SNP	Missense_Mutation	11	2591933	G	A	40	95
BRCA	TCGA-A7-A26H	OR51D1	SNP	Silent	11	4661647	G	A	47	35
BRCA	TCGA-A7-A26H	OR4C15	SNP	Missense_Mutation	11	55321885	T	G	63	50
BRCA	TCGA-A7-A26H	OR5D14	SNP	Silent	11	55563055	G	A	45	54
BRCA	TCGA-A7-A26H	CTSF	SNP	Missense_Mutation	11	66331579	C	T	22	89
BRCA	TCGA-A7-A26H	ATXN2	SNP	Missense_Mutation	12	111923644	G	A	45	86
BRCA	TCGA-A7-A26H	HNF1A	SNP	Missense_Mutation	12	121426687	C	A	17	60
BRCA	TCGA-A7-A26H	ANKLE2	SNP	Missense_Mutation	12	133306491	C	G	32	48
BRCA	TCGA-A7-A26H	TMEM117	SNP	Missense_Mutation	12	44238546	C	T	27	100
BRCA	TCGA-A7-A26H	PCBP2	INS	Frame_Shift_Ins	12	53854905	-	T	7	90
BRCA	TCGA-A7-A26H	MYO1A	SNP	Missense_Mutation	12	57436929	C	T	23	96
BRCA	TCGA-A7-A26H	MDM1	SNP	Missense_Mutation	12	68716927	G	C	41	71
BRCA	TCGA-A7-A26H	ITGBL1	SNP	Silent	13	102250555	G	A	41	57
BRCA	TCGA-A7-A26H	PDS5B	SNP	Silent	13	33315238	T	G	53	49
BRCA	TCGA-A7-A26H	DIAPH3	SNP	Missense_Mutation	13	60545069	G	A	41	59
BRCA	TCGA-A7-A26H	SLITRK1	SNP	Missense_Mutation	13	84453665	C	T	31	93
BRCA	TCGA-A7-A26H	PPP1R13B	SNP	Splice_site	14	104263855	T	A	50	76
BRCA	TCGA-A7-A26H	MNAT1	SNP	Missense_Mutation	14	61434964	G	C	33	97
BRCA	TCGA-A7-A26H	CACNA1H	SNP	Nonsense_Mutation	16	1254329	G	A	41	49
BRCA	TCGA-A7-A26H	POLR3E	SNP	Silent	16	22337485	C	T	32	56
BRCA	TCGA-A7-A26H	RBBP6	SNP	Missense_Mutation	16	24579150	G	A	45	96
BRCA	TCGA-A7-A26H	ADCY9	SNP	Missense_Mutation	16	4015842	G	T	36	92
BRCA	TCGA-A7-A26H	MAP2K4	SNP	Missense_Mutation	17	12044531	T	C	55	77
BRCA	TCGA-A7-A26H	TAOK1	SNP	Nonsense_Mutation	17	27818872	G	T	41	100
BRCA	TCGA-A7-A26H	NF1	SNP	Silent	17	29556189	C	T	30	49
BRCA	TCGA-A7-A26H	BRCA1	DEL	Frame_Shift_Del	17	41245484	TGTC	-	63	60
BRCA	TCGA-A7-A26H	TOB1	INS	In_Frame_Ins	17	48941102	-	AACACT	5	90
BRCA	TCGA-A7-A26H	MAP2K6	SNP	Missense_Mutation	17	67537883	C	A	32	64
BRCA	TCGA-A7-A26H	KIAA0195	SNP	Missense_Mutation	17	73489641	G	T	41	87
BRCA	TCGA-A7-A26H	KRBA2	SNP	Silent	17	8272527	G	A	40	42
BRCA	TCGA-A7-A26H	WDR7	SNP	Missense_Mutation	18	54354174	C	T	29	80
BRCA	TCGA-A7-A26H	ABCA7	SNP	Missense_Mutation	19	1064218	C	T	23	51
BRCA	TCGA-A7-A26H	GPX4	SNP	Silent	19	1106407	C	T	31	42
BRCA	TCGA-A7-A26H	FBXW9	SNP	Missense_Mutation	19	12800969	G	C	37	34
BRCA	TCGA-A7-A26H	CACNA1A	SNP	Missense_Mutation	19	13387897	C	G	29	81
BRCA	TCGA-A7-A26H	BRD4	SNP	Missense_Mutation	19	15366988	C	G	32	77
BRCA	TCGA-A7-A26H	ZNF792	SNP	Missense_Mutation	19	35450195	G	C	45	54
BRCA	TCGA-A7-A26H	ZNF461	SNP	Nonsense_Mutation	19	37129791	G	A	45	55
BRCA	TCGA-A7-A26H	ZNF461	SNP	Silent	19	37129879	G	C	45	48
BRCA	TCGA-A7-A26H	ZNF461	SNP	Nonsense_Mutation	19	37130138	G	C	45	61
BRCA	TCGA-A7-A26H	ZNF461	SNP	Missense_Mutation	19	37130379	G	C	33	51
BRCA	TCGA-A7-A26H	ZNF701	SNP	Missense_Mutation	19	53086613	G	C	41	53
BRCA	TCGA-A7-A26H	OSCAR	SNP	Missense_Mutation	19	54598516	C	G	32	58
BRCA	TCGA-A7-A26H	LILRB2	SNP	Silent	19	54780306	C	T	32	52
BRCA	TCGA-A7-A26H	NLRP7	SNP	Silent	19	55451233	G	A	40	47
BRCA	TCGA-A7-A26H	FMNL2	SNP	Missense_Mutation	2	153496517	C	T	32	57
BRCA	TCGA-A7-A26H	PRPF40A	SNP	Missense_Mutation	2	153533228	A	C	8	72
BRCA	TCGA-A7-A26H	LRP2	SNP	Missense_Mutation	2	170044543	C	T	31	68
BRCA	TCGA-A7-A26H	IDH1	SNP	Silent	2	209113243	C	T	29	76
BRCA	TCGA-A7-A26H	MAP2	SNP	Silent	2	210558835	T	C	52	26
BRCA	TCGA-A7-A26H	CCDC108	SNP	Silent	2	219895964	C	T	26	54
BRCA	TCGA-A7-A26H	ALMS1	SNP	Nonsense_Mutation	2	73799946	G	T	33	77
BRCA	TCGA-A7-A26H	PCIF1	SNP	Silent	20	44574946	C	T	31	46
BRCA	TCGA-A7-A26H	PCIF1	SNP	Missense_Mutation	20	44576059	C	G	30	82
BRCA	TCGA-A7-A26H	NCOA3	SNP	Missense_Mutation	20	46271054	C	T	32	67
BRCA	TCGA-A7-A26H	B4GALT5	SNP	Missense_Mutation	20	48260137	C	G	29	68
BRCA	TCGA-A7-A26H	COL6A1	SNP	Missense_Mutation	21	47402592	G	T	40	95
BRCA	TCGA-A7-A26H	LGALS1	SNP	Missense_Mutation	22	38073045	G	A	37	55
BRCA	TCGA-A7-A26H	TNRC6B	SNP	Missense_Mutation	22	40704525	C	T	32	87
BRCA	TCGA-A7-A26H	ALG13	SNP	Splice_site	23	110970673	G	T	39	70
BRCA	TCGA-A7-A26H	SMARCA1	SNP	Missense_Mutation	23	128602783	C	A	22	94
BRCA	TCGA-A7-A26H	L1CAM	SNP	Silent	23	153129444	G	A	37	45
BRCA	TCGA-A7-A26H	ATP6AP1	SNP	Silent	23	153662003	G	A	45	62
BRCA	TCGA-A7-A26H	SCML1	SNP	Silent	23	17768235	C	T	29	24
BRCA	TCGA-A7-A26H	TSPYL2	SNP	Missense_Mutation	23	53114174	C	T	23	71
BRCA	TCGA-A7-A26H	PGK1	SNP	Silent	23	77369391	G	A	47	83
BRCA	TCGA-A7-A26H	KAL1	SNP	Splice_Site	23	8553307	C	A	18	87
BRCA	TCGA-A7-A26H	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A7-A26H	CTNNB1	SNP	Missense_Mutation	3	41280699	G	A	45	100
BRCA	TCGA-A7-A26H	BOD1L1	SNP	Missense_Mutation	4	13605856	C	G	32	77
BRCA	TCGA-A7-A26H	FNIP2	SNP	Silent	4	159791486	G	A	33	47
BRCA	TCGA-A7-A26H	CRMP1	SNP	Splice_site	4	5830394	G	A	38	95
BRCA	TCGA-A7-A26H	PCDHA9	SNP	Missense_Mutation	5	140228399	G	A	41	76
BRCA	TCGA-A7-A26H	PCDHB4	SNP	Nonsense_Mutation	5	140503864	G	T	45	94
BRCA	TCGA-A7-A26H	FAM105B	SNP	Silent	5	14693019	C	G	32	52
BRCA	TCGA-A7-A26H	GFPT2	SNP	Silent	5	179757778	C	G	29	72
BRCA	TCGA-A7-A26H	SLC22A16	SNP	Silent	6	110768127	C	T	19	27
BRCA	TCGA-A7-A26H	IL20RA	SNP	Nonsense_Mutation	6	137330612	C	A	32	54
BRCA	TCGA-A7-A26H	IGF2R	SNP	Silent	6	160461698	C	T	32	53
BRCA	TCGA-A7-A26H	ZSCAN23	SNP	Silent	6	28403768	C	T	25	59
BRCA	TCGA-A7-A26H	COL9A1	SNP	Missense_Mutation	6	70948982	A	T	16	62
BRCA	TCGA-A7-A26H	C7orf50	SNP	Missense_Mutation	7	1166897	G	C	41	49
BRCA	TCGA-A7-A26H	LRGUK	SNP	Silent	7	133863335	G	A	45	78
BRCA	TCGA-A7-A26H	HIPK2	SNP	Missense_Mutation	7	139299077	C	G	29	100
BRCA	TCGA-A7-A26H	ABCF2	SNP	Missense_Mutation	7	150916170	C	G	32	95
BRCA	TCGA-A7-A26H	GRM3	SNP	Silent	7	86415885	G	A	45	62
BRCA	TCGA-A7-A26H	EMC2	SNP	Missense_Mutation	8	109462671	G	A	45	86
BRCA	TCGA-A7-A26H	CHD7	SNP	Missense_Mutation	8	61765855	G	C	33	68
BRCA	TCGA-A7-A26H	GABBR2	SNP	Missense_Mutation	9	101235526	G	A	39	69
BRCA	TCGA-A7-A26H	RGS3	SNP	Nonsense_Mutation	9	116247927	C	T	29	62
BRCA	TCGA-A7-A26H	DENND1A	SNP	Missense_Mutation	9	126345542	C	G	32	72
BRCA	TCGA-A7-A26I	C1orf85	SNP	Missense_Mutation	1	156263310	C	T	26	68
BRCA	TCGA-A7-A26I	COPA	SNP	Missense_Mutation	1	160264342	G	A	33	71
BRCA	TCGA-A7-A26I	C10orf2	SNP	Missense_Mutation	10	102753070	G	C	45	100
BRCA	TCGA-A7-A26I	CCDC172	SNP	Missense_Mutation	10	118117402	A	C	9	80
BRCA	TCGA-A7-A26I	DMBT1	SNP	Silent	10	124351807	C	A	22	46
BRCA	TCGA-A7-A26I	ADARB2	SNP	Missense_Mutation	10	1405909	C	G	18	85
BRCA	TCGA-A7-A26I	DRGX	SNP	Missense_Mutation	10	50594777	G	T	43	96
BRCA	TCGA-A7-A26I	TNKS2	SNP	Silent	10	93572900	A	G	11	47
BRCA	TCGA-A7-A26I	NELL1	SNP	Missense_Mutation	11	20699549	C	T	24	49
BRCA	TCGA-A7-A26I	FCHSD2	SNP	Splice_site	11	72552500	G	A	40	46
BRCA	TCGA-A7-A26I	ALKBH2	SNP	Missense_Mutation	12	109530530	T	C	54	50
BRCA	TCGA-A7-A26I	ARHGAP9	SNP	Missense_Mutation	12	57873203	G	T	48	69
BRCA	TCGA-A7-A26I	CLYBL	SNP	Missense_Mutation	13	100425236	G	C	48	94
BRCA	TCGA-A7-A26I	ANKRD20A9P	SNP	Silent	13	19392413	C	T	20	62
BRCA	TCGA-A7-A26I	GOLGA6L1	DEL	In_Frame_Del	15	22742655	AGG	-	3	51
BRCA	TCGA-A7-A26I	NPAP1	SNP	Missense_Mutation	15	24922617	G	A	36	61
BRCA	TCGA-A7-A26I	HERC2	SNP	Missense_Mutation	15	28483866	T	C	57	50
BRCA	TCGA-A7-A26I	THAP10	SNP	Missense_Mutation	15	71184461	A	T	11	54
BRCA	TCGA-A7-A26I	ZNF500	SNP	Missense_Mutation	16	4802807	G	A	41	77
BRCA	TCGA-A7-A26I	FLOT2	SNP	Missense_Mutation	17	27211282	C	A	23	70
BRCA	TCGA-A7-A26I	FMNL1	SNP	Missense_Mutation	17	43321319	C	T	23	64
BRCA	TCGA-A7-A26I	TRIM25	SNP	Missense_Mutation	17	54969350	C	T	23	84
BRCA	TCGA-A7-A26I	TP53	SNP	Missense_Mutation	17	7577141	C	T	30	95
BRCA	TCGA-A7-A26I	MOCOS	SNP	Missense_Mutation	18	33785106	C	A	32	66
BRCA	TCGA-A7-A26I	SYT4	SNP	Missense_Mutation	18	40851784	C	T	23	100
BRCA	TCGA-A7-A26I	ZNF681	SNP	Missense_Mutation	19	23927048	G	A	45	51
BRCA	TCGA-A7-A26I	LGALS14	SNP	Nonsense_Mutation	19	40199876	C	T	31	50
BRCA	TCGA-A7-A26I	POTEF	SNP	Missense_Mutation	2	130833036	T	C	55	56
BRCA	TCGA-A7-A26I	TTN	SNP	Missense_Mutation	2	179615822	T	A	49	48
BRCA	TCGA-A7-A26I	TMEM17	SNP	Silent	2	62729608	C	T	18	49
BRCA	TCGA-A7-A26I	UBASH3A	SNP	Missense_Mutation	21	43829605	C	T	19	73
BRCA	TCGA-A7-A26I	OCRL	SNP	Missense_Mutation	23	128722977	G	C	39	74
BRCA	TCGA-A7-A26I	ZNF185	SNP	Missense_Mutation	23	152128305	G	A	35	38
BRCA	TCGA-A7-A26I	PPEF1	SNP	Missense_Mutation	23	18843873	A	C	8	71
BRCA	TCGA-A7-A26I	BRWD3	SNP	Missense_Mutation	23	79937970	G	T	46	68
BRCA	TCGA-A7-A26I	PEX5L	SNP	Missense_Mutation	3	179605499	G	A	37	86
BRCA	TCGA-A7-A26I	SDHAP1	SNP	Splice_Site	3	195713476	C	A	20	52
BRCA	TCGA-A7-A26I	NT5DC2	SNP	Splice_Site	3	52561308	A	C	14	92
BRCA	TCGA-A7-A26I	CEP135	SNP	Missense_Mutation	4	56846363	C	T	27	49
BRCA	TCGA-A7-A26I	MUC12	SNP	Missense_Mutation	7	100644027	C	A	22	51
BRCA	TCGA-A7-A26I	GGCT	SNP	Missense_Mutation	7	30544259	C	A	23	91
BRCA	TCGA-A7-A26I	CHD7	SNP	Missense_Mutation	8	61773610	C	T	30	63
BRCA	TCGA-A7-A26I	FRMD3	SNP	Missense_Mutation	9	85863339	C	T	29	86
BRCA	TCGA-A7-A26J	PROK1	SNP	Missense_Mutation	1	110996692	A	C	6	87
BRCA	TCGA-A7-A26J	FAM72B	SNP	Silent	1	120839839	T	C	53	51
BRCA	TCGA-A7-A26J	PRAMEF4	SNP	Silent	1	12939782	A	G	5	47
BRCA	TCGA-A7-A26J	OMA1	SNP	Missense_Mutation	1	58946709	C	T	21	56
BRCA	TCGA-A7-A26J	PTPRE	SNP	Missense_Mutation	10	129845722	C	T	24	56
BRCA	TCGA-A7-A26J	PRKCQ	SNP	Silent	10	6528089	G	T	46	100
BRCA	TCGA-A7-A26J	MS4A2	SNP	Silent	11	59861502	C	T	32	50
BRCA	TCGA-A7-A26J	INPPL1	SNP	Missense_Mutation	11	71946958	A	G	11	67
BRCA	TCGA-A7-A26J	CPNE8	SNP	Nonsense_Mutation	12	39079360	G	T	48	54
BRCA	TCGA-A7-A26J	DLST	SNP	Splice_site	14	75352289	G	T	43	68
BRCA	TCGA-A7-A26J	ASIC2	SNP	Missense_Mutation	17	32483404	C	T	19	52
BRCA	TCGA-A7-A26J	DPP10	SNP	Missense_Mutation	2	116101439	C	T	32	53
BRCA	TCGA-A7-A26J	COL5A2	SNP	Missense_Mutation	2	189918668	G	C	44	71
BRCA	TCGA-A7-A26J	TOX2	SNP	Missense_Mutation	20	42683025	G	A	38	44
BRCA	TCGA-A7-A26J	PTGIS	SNP	Missense_Mutation	20	48124536	T	G	54	51
BRCA	TCGA-A7-A26J	DEPDC5	SNP	Splice_site	22	32293469	T	A	58	91
BRCA	TCGA-A7-A26J	USP9X	SNP	Missense_Mutation	23	41082490	C	G	28	96
BRCA	TCGA-A7-A26J	FLNB	SNP	Missense_Mutation	3	58084492	C	A	18	56
BRCA	TCGA-A7-A26J	ROBO2	SNP	Missense_Mutation	3	77611806	C	T	32	89
BRCA	TCGA-A7-A26J	IL17RC	SNP	Missense_Mutation	3	9959658	T	G	59	72
BRCA	TCGA-A7-A26J	PCDH1	SNP	Nonsense_Mutation	5	141244045	G	T	48	60
BRCA	TCGA-A7-A26J	HIST1H3G	SNP	Missense_Mutation	6	26271575	C	T	18	96
BRCA	TCGA-A7-A26J	EYS	SNP	Silent	6	65303044	T	G	57	46
BRCA	TCGA-A7-A26J	FAM86B1	SNP	Missense_Mutation	8	12044010	C	T	31	64
BRCA	TCGA-A7-A26J	NR6A1	SNP	Nonsense_Mutation	9	127285049	C	A	30	94
BRCA	TCGA-A8-A06N	TRIM33	SNP	Missense_Mutation	1	115006984	G	A	39	80
BRCA	TCGA-A8-A06N	FLG	SNP	Silent	1	152283965	G	T	38	49
BRCA	TCGA-A8-A06N	RGS8	SNP	Silent	1	182616032	G	C	43	56
BRCA	TCGA-A8-A06N	ARID1A	INS	Frame_Shift_Ins	1	27101427	-	TA	32	97
BRCA	TCGA-A8-A06N	OR8G2	SNP	Missense_Mutation	11	124096150	C	G	29	44
BRCA	TCGA-A8-A06N	LRRK2	SNP	Missense_Mutation	12	40745381	C	T	19	62
BRCA	TCGA-A8-A06N	SCN8A	SNP	Missense_Mutation	12	52056740	G	T	41	75
BRCA	TCGA-A8-A06N	SACS	SNP	Missense_Mutation	13	23910010	C	A	32	97
BRCA	TCGA-A8-A06N	OXGR1	SNP	Missense_Mutation	13	97639047	C	G	23	55
BRCA	TCGA-A8-A06N	FOXA1	SNP	Missense_Mutation	14	38061313	C	T	29	93
BRCA	TCGA-A8-A06N	FMN1	SNP	Silent	15	33256332	A	G	8	57
BRCA	TCGA-A8-A06N	SRRM2	SNP	Missense_Mutation	16	2816906	C	T	24	77
BRCA	TCGA-A8-A06N	HYDIN	SNP	Splice_Site	16	71100838	T	C	53	53
BRCA	TCGA-A8-A06N	CD300LF	SNP	Missense_Mutation	17	72699195	G	T	44	49
BRCA	TCGA-A8-A06N	ZNF396	SNP	Silent	18	32949212	A	G	16	50
BRCA	TCGA-A8-A06N	FCGBP	SNP	Silent	19	40367787	G	A	38	51
BRCA	TCGA-A8-A06N	CCDC8	SNP	Missense_Mutation	19	46915313	G	A	38	47
BRCA	TCGA-A8-A06N	ZNF525	SNP	Silent	19	53884897	C	T	19	50
BRCA	TCGA-A8-A06N	PGAP1	SNP	Missense_Mutation	2	197707464	T	A	59	67
BRCA	TCGA-A8-A06N	DYSF	SNP	Silent	2	71828631	G	A	39	53
BRCA	TCGA-A8-A06N	RBFOX2	SNP	Missense_Mutation	22	36142022	G	A	42	85
BRCA	TCGA-A8-A06N	TTC14	SNP	Missense_Mutation	3	180320056	C	T	23	63
BRCA	TCGA-A8-A06N	EHHADH	SNP	Silent	3	184911124	G	A	38	53
BRCA	TCGA-A8-A06N	RNF168	SNP	Missense_Mutation	3	196199408	G	C	35	56
BRCA	TCGA-A8-A06N	CEP120	SNP	Missense_Mutation	5	122724169	T	G	49	41
BRCA	TCGA-A8-A06N	PCDHA9	SNP	Missense_Mutation	5	140229518	C	T	27	42
BRCA	TCGA-A8-A06N	PCDHGB3	SNP	Missense_Mutation	5	140751900	C	T	27	48
BRCA	TCGA-A8-A06N	SYNPO	SNP	Missense_Mutation	5	150029357	G	A	38	98
BRCA	TCGA-A8-A06N	MYO10	SNP	Missense_Mutation	5	16701433	C	T	23	84
BRCA	TCGA-A8-A06N	CDH10	SNP	Silent	5	24491920	G	T	33	61
BRCA	TCGA-A8-A06N	RXFP3	SNP	Missense_Mutation	5	33937261	C	T	27	100
BRCA	TCGA-A8-A06N	LOC100288496	SNP	Missense_Mutation	7	304021	C	G	27	45
BRCA	TCGA-A8-A06N	E2F5	SNP	Missense_Mutation	8	86121476	G	A	40	85
BRCA	TCGA-A8-A06N	ZNF782	SNP	Nonsense_Mutation	9	99580378	C	A	30	88
BRCA	TCGA-A8-A06O	ANKRD34A	SNP	Silent	1	145473724	C	T	19	40
BRCA	TCGA-A8-A06O	MFSD4	SNP	Missense_Mutation	1	205568262	T	C	52	63
BRCA	TCGA-A8-A06O	KCNH1	SNP	Missense_Mutation	1	210948781	C	T	23	100
BRCA	TCGA-A8-A06O	TCEB3	SNP	Missense_Mutation	1	24082459	C	T	27	78
BRCA	TCGA-A8-A06O	KDM4A	SNP	Missense_Mutation	1	44133570	C	T	21	100
BRCA	TCGA-A8-A06O	LARP4B	DEL	Frame_Shift_Del	10	876875	T	-	49	63
BRCA	TCGA-A8-A06O	LARP4B	SNP	Missense_Mutation	10	876876	A	C	13	49
BRCA	TCGA-A8-A06O	PTEN	DEL	Frame_Shift_Del	10	89720707	CTCAGAAA	-	24	57
BRCA	TCGA-A8-A06O	CTR9	SNP	Missense_Mutation	11	10791787	C	G	25	84
BRCA	TCGA-A8-A06O	DCDC1	SNP	Silent	11	31131822	G	A	44	44
BRCA	TCGA-A8-A06O	OR9Q1	SNP	Silent	11	57947558	C	A	32	47
BRCA	TCGA-A8-A06O	TBX3	DEL	In_Frame_Del	12	115118704	TGT	-	51	91
BRCA	TCGA-A8-A06O	ABCB9	SNP	Missense_Mutation	12	123433275	C	T	19	63
BRCA	TCGA-A8-A06O	FAIM2	SNP	Silent	12	50291851	G	A	40	43
BRCA	TCGA-A8-A06O	TIMELESS	SNP	Missense_Mutation	12	56817240	C	T	19	58
BRCA	TCGA-A8-A06O	FLT3	SNP	Silent	13	28588649	C	T	26	47
BRCA	TCGA-A8-A06O	RDH12	SNP	Missense_Mutation	14	68192813	T	C	51	65
BRCA	TCGA-A8-A06O	BLM	SNP	Missense_Mutation	15	91304296	G	A	45	67
BRCA	TCGA-A8-A06O	BLM	SNP	Nonsense_Mutation	15	91304368	G	T	41	73
BRCA	TCGA-A8-A06O	WWP2	SNP	Missense_Mutation	16	69970309	G	A	39	87
BRCA	TCGA-A8-A06O	TNS4	SNP	Missense_Mutation	17	38645003	C	A	22	50
BRCA	TCGA-A8-A06O	KRT15	SNP	Missense_Mutation	17	39673185	C	T	19	76
BRCA	TCGA-A8-A06O	STAT5A	SNP	Nonsense_Mutation	17	40451780	C	T	21	72
BRCA	TCGA-A8-A06O	PRKCA	SNP	Missense_Mutation	17	64641530	G	A	40	98
BRCA	TCGA-A8-A06O	ACADVL	SNP	Missense_Mutation	17	7123807	C	T	21	47
BRCA	TCGA-A8-A06O	ST6GALNAC1	SNP	Missense_Mutation	17	74621554	T	C	49	75
BRCA	TCGA-A8-A06O	TP53	SNP	Missense_Mutation	17	7577102	C	T	22	82
BRCA	TCGA-A8-A06O	CYP4F12	SNP	Silent	19	15794459	C	T	19	37
BRCA	TCGA-A8-A06O	NWD1	SNP	Missense_Mutation	19	16902312	C	T	19	55
BRCA	TCGA-A8-A06O	FAM125A	SNP	Missense_Mutation	19	17534576	T	C	50	72
BRCA	TCGA-A8-A06O	GPATCH1	SNP	Missense_Mutation	19	33587282	G	C	44	48
BRCA	TCGA-A8-A06O	ZNF571	SNP	Missense_Mutation	19	38055754	C	A	24	71
BRCA	TCGA-A8-A06O	CYP2B7P1	SNP	Silent	19	41445067	G	A	43	52
BRCA	TCGA-A8-A06O	CCDC155	SNP	Missense_Mutation	19	49897775	C	T	23	50
BRCA	TCGA-A8-A06O	ZNF649	SNP	Missense_Mutation	19	52395062	T	G	62	52
BRCA	TCGA-A8-A06O	PROKR1	SNP	Silent	2	68882405	C	T	19	55
BRCA	TCGA-A8-A06O	DNAH6	DEL	Frame_Shift_Del	2	84800662	C	-	29	53
BRCA	TCGA-A8-A06O	CST3	SNP	Missense_Mutation	20	23614578	G	A	37	45
BRCA	TCGA-A8-A06O	SMOX	SNP	Silent	20	4163035	C	A	25	47
BRCA	TCGA-A8-A06O	SEMG2	SNP	Missense_Mutation	20	43851148	G	A	40	48
BRCA	TCGA-A8-A06O	HAO1	SNP	Missense_Mutation	20	7915232	G	A	37	94
BRCA	TCGA-A8-A06O	CECR5	SNP	Missense_Mutation	22	17630576	T	G	54	47
BRCA	TCGA-A8-A06O	PRR5	SNP	Missense_Mutation	22	45075701	C	A	17	52
BRCA	TCGA-A8-A06O	GTSE1	SNP	Missense_Mutation	22	46712099	G	C	41	63
BRCA	TCGA-A8-A06O	GTSE1	SNP	Missense_Mutation	22	46712226	G	A	33	51
BRCA	TCGA-A8-A06O	SLC6A14	SNP	Missense_Mutation	23	115584214	G	T	42	95
BRCA	TCGA-A8-A06O	FAM58A	SNP	Splice_Site	23	152860004	C	A	18	94
BRCA	TCGA-A8-A06O	GYG2	SNP	Missense_Mutation	23	2773101	C	T	23	88
BRCA	TCGA-A8-A06O	OTC	SNP	Splice_site	23	38212026	G	A	39	54
BRCA	TCGA-A8-A06O	SLC7A3	SNP	Missense_Mutation	23	70145947	C	A	26	57
BRCA	TCGA-A8-A06O	TBL1X	SNP	Missense_Mutation	23	9661244	C	T	19	80
BRCA	TCGA-A8-A06O	FGD5	SNP	Missense_Mutation	3	14862541	C	T	27	60
BRCA	TCGA-A8-A06O	TPRG1	SNP	Missense_Mutation	3	188925244	C	T	32	67
BRCA	TCGA-A8-A06O	PI4K2B	SNP	Missense_Mutation	4	25256819	T	C	57	94
BRCA	TCGA-A8-A06O	CCNG2	DEL	In_Frame_Del	4	78081937	GAA	-	45	99
BRCA	TCGA-A8-A06O	DNAH5	SNP	Silent	5	13719037	G	A	40	47
BRCA	TCGA-A8-A06O	PCDHA1	SNP	Missense_Mutation	5	140167380	G	A	38	62
BRCA	TCGA-A8-A06O	PCDHA13	SNP	Silent	5	140263380	G	A	39	45
BRCA	TCGA-A8-A06O	PCDHB8	SNP	Missense_Mutation	5	140559119	G	A	38	54
BRCA	TCGA-A8-A06O	PCDHB9	SNP	Missense_Mutation	5	140567865	G	A	39	54
BRCA	TCGA-A8-A06O	ACTBL2	SNP	Missense_Mutation	5	56777552	A	C	12	74
BRCA	TCGA-A8-A06O	ACTBL2	SNP	Missense_Mutation	5	56777554	T	G	64	67
BRCA	TCGA-A8-A06O	MAST4	SNP	Missense_Mutation	5	66461473	A	C	3	66
BRCA	TCGA-A8-A06O	UBE3D	SNP	Missense_Mutation	6	83767586	C	T	30	79
BRCA	TCGA-A8-A06O	ZNF292	DEL	Frame_Shift_Del	6	87969506	AG	-	7	54
BRCA	TCGA-A8-A06O	BACH2	SNP	Missense_Mutation	6	90642332	G	A	38	72
BRCA	TCGA-A8-A06O	C7orf65	SNP	Missense_Mutation	7	47694923	C	T	23	60
BRCA	TCGA-A8-A06O	PON1	SNP	Nonsense_Mutation	7	94944672	G	T	45	96
BRCA	TCGA-A8-A06O	FAM78A	SNP	Missense_Mutation	9	134136507	C	A	23	96
BRCA	TCGA-A8-A06O	TUBBP5	SNP	Missense_Mutation	9	141070851	A	G	11	72
BRCA	TCGA-A8-A06O	KIF27	SNP	Missense_Mutation	9	86482718	G	A	40	70
BRCA	TCGA-A8-A06P	NFASC	SNP	Missense_Mutation	1	204948673	G	A	37	70
BRCA	TCGA-A8-A06P	EPHB2	SNP	Missense_Mutation	1	23233419	T	A	51	90
BRCA	TCGA-A8-A06P	VN1R5	SNP	Silent	1	247420075	C	T	29	69
BRCA	TCGA-A8-A06P	SMTNL1	SNP	Missense_Mutation	11	57311158	C	A	25	62
BRCA	TCGA-A8-A06P	CSAD	SNP	Silent	12	53552403	G	A	40	32
BRCA	TCGA-A8-A06P	AAAS	SNP	Missense_Mutation	12	53708115	A	G	12	85
BRCA	TCGA-A8-A06P	NACA	SNP	Missense_Mutation	12	57118242	C	T	29	94
BRCA	TCGA-A8-A06P	MYCBP2	SNP	Missense_Mutation	13	77671946	T	C	51	89
BRCA	TCGA-A8-A06P	EDDM3A	SNP	Missense_Mutation	14	21216114	C	A	30	55
BRCA	TCGA-A8-A06P	ATP9B	SNP	Missense_Mutation	18	77137328	T	G	54	75
BRCA	TCGA-A8-A06P	PIP5K1C	SNP	Missense_Mutation	19	3656491	T	C	57	73
BRCA	TCGA-A8-A06P	A1BG	SNP	Missense_Mutation	19	58864307	C	A	28	55
BRCA	TCGA-A8-A06P	TRIM28	SNP	Silent	19	59061549	C	T	30	49
BRCA	TCGA-A8-A06P	C3	SNP	Missense_Mutation	19	6679172	G	A	40	52
BRCA	TCGA-A8-A06P	ZNF133	SNP	Missense_Mutation	20	18296577	T	G	55	72
BRCA	TCGA-A8-A06P	GPR101	SNP	Missense_Mutation	23	136112380	G	C	47	59
BRCA	TCGA-A8-A06P	PTCHD1	SNP	Silent	23	23412005	C	T	22	65
BRCA	TCGA-A8-A06P	POLQ	SNP	Missense_Mutation	3	121207309	A	G	15	88
BRCA	TCGA-A8-A06P	ALDH1L1	SNP	Silent	3	125824621	G	A	40	49
BRCA	TCGA-A8-A06P	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A8-A06P	C3orf43	SNP	Missense_Mutation	3	196234930	C	T	24	67
BRCA	TCGA-A8-A06P	LAMB2	SNP	Missense_Mutation	3	49158663	T	A	55	91
BRCA	TCGA-A8-A06P	AADAT	SNP	Silent	4	170988516	G	A	40	47
BRCA	TCGA-A8-A06P	PCDHB13	SNP	Missense_Mutation	5	140595329	C	T	27	56
BRCA	TCGA-A8-A06P	MAP3K1	INS	Frame_Shift_Ins	5	56178399	-	T	29	56
BRCA	TCGA-A8-A06P	MAP3K1	SNP	Missense_Mutation	5	56178400	A	G	5	71
BRCA	TCGA-A8-A06P	MAP3K1	DEL	Frame_Shift_Del	5	56189387	C	-	30	58
BRCA	TCGA-A8-A06P	TCF19	INS	Frame_Shift_Ins	6	31127397	-	A	47	60
BRCA	TCGA-A8-A06P	SYNCRIP	SNP	Nonsense_Mutation	6	86350199	G	A	45	72
BRCA	TCGA-A8-A06P	MLL3	SNP	Splice_site	7	151904386	T	C	55	58
BRCA	TCGA-A8-A06P	GDAP1	SNP	Missense_Mutation	8	75276444	A	G	2	75
BRCA	TCGA-A8-A06P	PLIN2	SNP	Missense_Mutation	9	19121142	C	T	27	95
BRCA	TCGA-A8-A06Q	KIF1B	SNP	Missense_Mutation	1	10412697	C	T	31	58
BRCA	TCGA-A8-A06Q	PTPN22	SNP	Missense_Mutation	1	114376945	G	T	36	58
BRCA	TCGA-A8-A06Q	BCAS2	SNP	Silent	1	115113329	C	T	32	76
BRCA	TCGA-A8-A06Q	TMEM88B	SNP	Nonsense_Mutation	1	1356248	G	A	41	50
BRCA	TCGA-A8-A06Q	SETDB1	SNP	Missense_Mutation	1	150921914	C	A	32	82
BRCA	TCGA-A8-A06Q	RORC	SNP	Silent	1	151787669	C	T	29	50
BRCA	TCGA-A8-A06Q	FLG	SNP	Nonsense_Mutation	1	152282641	G	C	45	63
BRCA	TCGA-A8-A06Q	FLG	SNP	Nonsense_Mutation	1	152282818	G	C	45	55
BRCA	TCGA-A8-A06Q	ASH1L	SNP	Missense_Mutation	1	155448175	C	G	29	76
BRCA	TCGA-A8-A06Q	GON4L	SNP	Silent	1	155783569	G	A	45	47
BRCA	TCGA-A8-A06Q	UBQLN4	SNP	Missense_Mutation	1	156011378	T	G	59	24
BRCA	TCGA-A8-A06Q	CD1E	SNP	Nonsense_Mutation	1	158326632	G	A	41	62
BRCA	TCGA-A8-A06Q	FMO4	SNP	Missense_Mutation	1	171306533	G	C	41	65
BRCA	TCGA-A8-A06Q	FAM5B	SNP	Silent	1	177245422	C	T	31	48
BRCA	TCGA-A8-A06Q	SMG7	SNP	Missense_Mutation	1	183511387	G	A	37	79
BRCA	TCGA-A8-A06Q	TMCO4	SNP	Silent	1	20097810	C	A	29	48
BRCA	TCGA-A8-A06Q	NAV1	SNP	Missense_Mutation	1	201751421	C	T	31	100
BRCA	TCGA-A8-A06Q	SLC41A1	SNP	Missense_Mutation	1	205767101	C	T	31	62
BRCA	TCGA-A8-A06Q	KCTD3	SNP	Missense_Mutation	1	215785242	G	C	33	99
BRCA	TCGA-A8-A06Q	BPNT1	SNP	Missense_Mutation	1	220242756	G	A	41	99
BRCA	TCGA-A8-A06Q	ZMYM4	SNP	Nonsense_Mutation	1	35835660	C	T	29	73
BRCA	TCGA-A8-A06Q	BTBD19	SNP	Missense_Mutation	1	45279142	G	A	33	66
BRCA	TCGA-A8-A06Q	TOE1	SNP	Silent	1	45807208	G	A	47	53
BRCA	TCGA-A8-A06Q	ZYG11A	SNP	Missense_Mutation	1	53323171	G	A	33	76
BRCA	TCGA-A8-A06Q	ZYG11A	SNP	Silent	1	53347220	C	G	32	45
BRCA	TCGA-A8-A06Q	ANGPTL3	SNP	Missense_Mutation	1	63064371	T	C	64	79
BRCA	TCGA-A8-A06Q	INSL5	SNP	Nonsense_Mutation	1	67263791	T	A	62	50
BRCA	TCGA-A8-A06Q	MIER1	SNP	Missense_Mutation	1	67450308	G	C	45	83
BRCA	TCGA-A8-A06Q	HABP2	SNP	Missense_Mutation	10	115340443	C	T	29	88
BRCA	TCGA-A8-A06Q	FAM171A1	SNP	Missense_Mutation	10	15255199	C	G	32	44
BRCA	TCGA-A8-A06Q	FAM171A1	SNP	Missense_Mutation	10	15255691	C	A	32	78
BRCA	TCGA-A8-A06Q	MLLT10	SNP	Missense_Mutation	10	21962492	C	T	29	60
BRCA	TCGA-A8-A06Q	SPAG6	SNP	Missense_Mutation	10	22678164	C	T	19	52
BRCA	TCGA-A8-A06Q	ZEB1	SNP	Missense_Mutation	10	31815999	G	A	43	52
BRCA	TCGA-A8-A06Q	NET1	SNP	Missense_Mutation	10	5498724	G	A	37	57
BRCA	TCGA-A8-A06Q	KIAA1279	SNP	Missense_Mutation	10	70776092	G	C	45	100
BRCA	TCGA-A8-A06Q	FAM22A	SNP	Missense_Mutation	10	88992675	C	T	19	56
BRCA	TCGA-A8-A06Q	TM9SF3	SNP	Missense_Mutation	10	98311022	C	T	29	83
BRCA	TCGA-A8-A06Q	ANGPTL5	SNP	Missense_Mutation	11	101777891	C	T	29	53
BRCA	TCGA-A8-A06Q	GRIA4	SNP	Missense_Mutation	11	105781241	G	C	33	53
BRCA	TCGA-A8-A06Q	ZBTB16	SNP	Missense_Mutation	11	113935256	G	A	37	83
BRCA	TCGA-A8-A06Q	C11orf45	DEL	Frame_Shift_Del	11	128773376	T	-	60	42
BRCA	TCGA-A8-A06Q	ABTB2	SNP	Missense_Mutation	11	34182470	C	T	31	61
BRCA	TCGA-A8-A06Q	CHST1	SNP	Missense_Mutation	11	45671732	G	A	39	66
BRCA	TCGA-A8-A06Q	OR52A4	SNP	Missense_Mutation	11	5142091	G	C	36	56
BRCA	TCGA-A8-A06Q	DAK	SNP	Missense_Mutation	11	61111640	G	C	41	65
BRCA	TCGA-A8-A06Q	ZBTB3	SNP	Missense_Mutation	11	62520830	C	T	25	94
BRCA	TCGA-A8-A06Q	DNHD1	SNP	Missense_Mutation	11	6585612	C	T	29	78
BRCA	TCGA-A8-A06Q	PACS1	SNP	Missense_Mutation	11	66006688	G	A	37	74
BRCA	TCGA-A8-A06Q	DPP3	SNP	Missense_Mutation	11	66264824	G	A	41	74
BRCA	TCGA-A8-A06Q	RPS6KB2	SNP	Missense_Mutation	11	67202530	C	G	32	52
BRCA	TCGA-A8-A06Q	PAAF1	SNP	Silent	11	73611344	G	A	45	63
BRCA	TCGA-A8-A06Q	SCUBE2	SNP	Missense_Mutation	11	9088307	C	T	31	53
BRCA	TCGA-A8-A06Q	KDM4E	SNP	Nonsense_Mutation	11	94758974	C	T	29	85
BRCA	TCGA-A8-A06Q	KIAA1033	SNP	Missense_Mutation	12	105531752	C	T	29	100
BRCA	TCGA-A8-A06Q	CORO1C	SNP	Missense_Mutation	12	109072151	G	C	33	97
BRCA	TCGA-A8-A06Q	ANAPC7	SNP	Silent	12	110819687	C	T	29	52
BRCA	TCGA-A8-A06Q	SETD1B	SNP	Silent	12	122248732	G	A	33	62
BRCA	TCGA-A8-A06Q	GPRC5A	SNP	Missense_Mutation	12	13065406	C	A	30	79
BRCA	TCGA-A8-A06Q	P2RX2	SNP	Missense_Mutation	12	133198305	C	T	29	55
BRCA	TCGA-A8-A06Q	ITPR2	SNP	Silent	12	26551828	C	T	32	74
BRCA	TCGA-A8-A06Q	ITPR2	SNP	Missense_Mutation	12	26568266	C	T	29	86
BRCA	TCGA-A8-A06Q	CACNA1C	SNP	Missense_Mutation	12	2705075	C	T	19	71
BRCA	TCGA-A8-A06Q	REP15	SNP	Nonsense_Mutation	12	27850132	G	T	33	63
BRCA	TCGA-A8-A06Q	CCDC91	SNP	Missense_Mutation	12	28603099	G	C	33	70
BRCA	TCGA-A8-A06Q	EIF4B	SNP	Missense_Mutation	12	53413733	G	C	33	82
BRCA	TCGA-A8-A06Q	SRGAP1	SNP	Missense_Mutation	12	64488742	G	A	41	100
BRCA	TCGA-A8-A06Q	CD4	SNP	Missense_Mutation	12	6923397	G	A	33	30
BRCA	TCGA-A8-A06Q	METTL21C	SNP	Missense_Mutation	13	103343293	G	C	33	66
BRCA	TCGA-A8-A06Q	PARP4	SNP	Missense_Mutation	13	25064849	C	T	32	78
BRCA	TCGA-A8-A06Q	PABPC3	SNP	Missense_Mutation	13	25671591	C	G	30	56
BRCA	TCGA-A8-A06Q	CSNK1A1L	SNP	Missense_Mutation	13	37678900	C	T	32	80
BRCA	TCGA-A8-A06Q	RCBTB2	SNP	Missense_Mutation	13	49086299	C	G	22	100
BRCA	TCGA-A8-A06Q	CLN5	SNP	Missense_Mutation	13	77574712	T	C	53	93
BRCA	TCGA-A8-A06Q	MYCBP2	SNP	Nonsense_Mutation	13	77651360	G	A	47	100
BRCA	TCGA-A8-A06Q	OR4K14	SNP	Missense_Mutation	14	20483041	G	T	33	52
BRCA	TCGA-A8-A06Q	NIN	SNP	Nonsense_Mutation	14	51223742	G	A	45	67
BRCA	TCGA-A8-A06Q	FAM161B	SNP	Silent	14	74412991	C	T	29	38
BRCA	TCGA-A8-A06Q	COQ6	SNP	Missense_Mutation	14	74424951	G	T	45	80
BRCA	TCGA-A8-A06Q	ENSG00000188403	SNP	Missense_Mutation	15	20170069	C	G	30	55
BRCA	TCGA-A8-A06Q	LOC440243	SNP	Missense_Mutation	15	23572602	T	C	56	50
BRCA	TCGA-A8-A06Q	LTK	SNP	Silent	15	41797650	C	T	29	54
BRCA	TCGA-A8-A06Q	FBN1	SNP	Silent	15	48787333	G	T	43	51
BRCA	TCGA-A8-A06Q	MYO5A	SNP	Missense_Mutation	15	52662392	C	G	32	61
BRCA	TCGA-A8-A06Q	NARG2	SNP	Missense_Mutation	15	60741569	C	G	32	54
BRCA	TCGA-A8-A06Q	MAP2K5	DEL	In_Frame_Del	15	67835751	TGGCGC	-	59	52
BRCA	TCGA-A8-A06Q	C15orf39	SNP	Silent	15	75498915	C	T	32	49
BRCA	TCGA-A8-A06Q	CHD2	SNP	Nonsense_Mutation	15	93499827	C	T	29	97
BRCA	TCGA-A8-A06Q	ALDOA	SNP	Missense_Mutation	16	30080238	C	T	29	99
BRCA	TCGA-A8-A06Q	NLRC3	SNP	Missense_Mutation	16	3592723	G	C	33	56
BRCA	TCGA-A8-A06Q	BRD7	SNP	Missense_Mutation	16	50357560	C	T	32	97
BRCA	TCGA-A8-A06Q	KIAA0182	SNP	Missense_Mutation	16	85699765	G	A	41	55
BRCA	TCGA-A8-A06Q	TRPV2	SNP	Nonsense_Mutation	17	16327010	C	T	25	57
BRCA	TCGA-A8-A06Q	SEZ6	SNP	Silent	17	27308921	C	T	29	60
BRCA	TCGA-A8-A06Q	SLFN14	SNP	Missense_Mutation	17	33885048	A	G	14	69
BRCA	TCGA-A8-A06Q	KRT222	SNP	Missense_Mutation	17	38816288	C	T	30	99
BRCA	TCGA-A8-A06Q	SNF8	SNP	Missense_Mutation	17	47022045	C	G	32	98
BRCA	TCGA-A8-A06Q	ABCA8	SNP	Silent	17	66891114	C	T	32	51
BRCA	TCGA-A8-A06Q	TP53	SNP	Missense_Mutation	17	7577568	C	T	17	93
BRCA	TCGA-A8-A06Q	DNAH2	SNP	Missense_Mutation	17	7734627	G	C	33	96
BRCA	TCGA-A8-A06Q	TIMM22	SNP	Silent	17	904307	G	C	37	48
BRCA	TCGA-A8-A06Q	ABR	SNP	Silent	17	962030	G	C	45	58
BRCA	TCGA-A8-A06Q	CEP192	SNP	Splice_Site	18	13099581	G	A	44	76
BRCA	TCGA-A8-A06Q	SETBP1	SNP	Missense_Mutation	18	42533287	G	A	45	95
BRCA	TCGA-A8-A06Q	CNDP2	SNP	Missense_Mutation	18	72178246	G	C	37	100
BRCA	TCGA-A8-A06Q	TSHZ1	SNP	Silent	18	72998610	C	G	29	91
BRCA	TCGA-A8-A06Q	NDUFV2	SNP	Missense_Mutation	18	9122601	C	G	29	86
BRCA	TCGA-A8-A06Q	SMARCA4	SNP	Missense_Mutation	19	11170790	G	A	39	73
BRCA	TCGA-A8-A06Q	ELL	SNP	Missense_Mutation	19	18576723	G	C	33	63
BRCA	TCGA-A8-A06Q	ZNF492	SNP	Missense_Mutation	19	22847909	G	A	45	50
BRCA	TCGA-A8-A06Q	ZNF536	INS	Frame_Shift_Ins	19	31039333	-	C	51	49
BRCA	TCGA-A8-A06Q	ZNF536	SNP	Missense_Mutation	19	31039334	G	A	45	62
BRCA	TCGA-A8-A06Q	GPATCH1	SNP	Silent	19	33602733	G	A	37	44
BRCA	TCGA-A8-A06Q	RBM42	SNP	Missense_Mutation	19	36124592	G	C	33	79
BRCA	TCGA-A8-A06Q	SIPA1L3	SNP	Missense_Mutation	19	38655162	C	G	30	95
BRCA	TCGA-A8-A06Q	LYPD5	SNP	Missense_Mutation	19	44302730	C	T	23	75
BRCA	TCGA-A8-A06Q	SPIB	SNP	Silent	19	50931497	C	A	30	53
BRCA	TCGA-A8-A06Q	ZNF534	SNP	Silent	19	52942228	G	A	33	36
BRCA	TCGA-A8-A06Q	FAM71E2	SNP	Missense_Mutation	19	55870549	C	A	31	32
BRCA	TCGA-A8-A06Q	RPL36	SNP	Missense_Mutation	19	5691557	C	G	30	62
BRCA	TCGA-A8-A06Q	ZNF805	SNP	Missense_Mutation	19	57764450	G	A	41	49
BRCA	TCGA-A8-A06Q	ZNF549	SNP	Missense_Mutation	19	58050005	C	G	32	45
BRCA	TCGA-A8-A06Q	SH2D3A	SNP	Silent	19	6754088	C	T	29	67
BRCA	TCGA-A8-A06Q	CLEC4M	SNP	Nonsense_Mutation	19	7832457	C	G	29	51
BRCA	TCGA-A8-A06Q	ELANE	SNP	Missense_Mutation	19	853386	G	A	37	72
BRCA	TCGA-A8-A06Q	ITGAV	SNP	Missense_Mutation	2	187511517	G	A	45	59
BRCA	TCGA-A8-A06Q	MAP2	SNP	Missense_Mutation	2	210559707	A	G	8	45
BRCA	TCGA-A8-A06Q	LANCL1	SNP	Missense_Mutation	2	211301071	C	T	29	99
BRCA	TCGA-A8-A06Q	ABCA12	SNP	Missense_Mutation	2	215831644	G	C	41	100
BRCA	TCGA-A8-A06Q	CHRNG	SNP	Missense_Mutation	2	233406100	G	A	37	99
BRCA	TCGA-A8-A06Q	UGT1A1	SNP	Silent	2	234669446	C	T	32	56
BRCA	TCGA-A8-A06Q	RBM44	SNP	Missense_Mutation	2	238726892	C	T	29	51
BRCA	TCGA-A8-A06Q	PER2	SNP	Splice_Site	2	239181710	C	T	19	94
BRCA	TCGA-A8-A06Q	CRIM1	SNP	Missense_Mutation	2	36668460	G	A	45	78
BRCA	TCGA-A8-A06Q	DHX57	SNP	Missense_Mutation	2	39053665	C	G	32	94
BRCA	TCGA-A8-A06Q	SLC4A5	SNP	Missense_Mutation	2	74462323	C	T	29	94
BRCA	TCGA-A8-A06Q	C2orf90	SNP	Silent	2	905375	G	T	38	48
BRCA	TCGA-A8-A06Q	DLGAP4	SNP	Missense_Mutation	20	35128690	G	A	45	94
BRCA	TCGA-A8-A06Q	RAB36	SNP	Missense_Mutation	22	23503156	G	A	39	51
BRCA	TCGA-A8-A06Q	ZC3H7B	SNP	Silent	22	41739504	G	A	39	9
BRCA	TCGA-A8-A06Q	PLS3	SNP	Missense_Mutation	23	114868366	G	C	33	68
BRCA	TCGA-A8-A06Q	PLS3	SNP	Missense_Mutation	23	114869259	G	A	33	74
BRCA	TCGA-A8-A06Q	DOCK11	SNP	Missense_Mutation	23	117752671	G	A	45	95
BRCA	TCGA-A8-A06Q	SAGE1	SNP	Missense_Mutation	23	134994976	A	T	4	63
BRCA	TCGA-A8-A06Q	OFD1	SNP	Missense_Mutation	23	13785326	G	C	33	62
BRCA	TCGA-A8-A06Q	FAM47C	SNP	Missense_Mutation	23	37026644	G	T	42	54
BRCA	TCGA-A8-A06Q	IQSEC2	SNP	Silent	23	53276287	G	A	37	41
BRCA	TCGA-A8-A06Q	SPIN2A	SNP	Missense_Mutation	23	57162736	G	A	45	61
BRCA	TCGA-A8-A06Q	LOC100288788	SNP	Missense_Mutation	23	65176771	C	T	29	68
BRCA	TCGA-A8-A06Q	ITGB1BP2	SNP	Missense_Mutation	23	70524437	C	A	17	72
BRCA	TCGA-A8-A06Q	NHSL2	SNP	Missense_Mutation	23	71358848	C	A	28	60
BRCA	TCGA-A8-A06Q	DIAPH2	SNP	Silent	23	96369847	G	A	45	51
BRCA	TCGA-A8-A06Q	GHRL	SNP	Missense_Mutation	3	10331475	C	T	32	61
BRCA	TCGA-A8-A06Q	CD200R1L	SNP	Missense_Mutation	3	112546390	G	A	48	33
BRCA	TCGA-A8-A06Q	CCDC48	SNP	Silent	3	128758634	C	G	24	51
BRCA	TCGA-A8-A06Q	XPC	SNP	Silent	3	14190368	C	T	17	52
BRCA	TCGA-A8-A06Q	NR2C2	SNP	Silent	3	15055260	C	T	29	56
BRCA	TCGA-A8-A06Q	PLCL2	SNP	Missense_Mutation	3	17109478	T	C	49	88
BRCA	TCGA-A8-A06Q	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A06Q	SLC4A7	SNP	Missense_Mutation	3	27424666	G	C	41	76
BRCA	TCGA-A8-A06Q	TRIM71	SNP	Missense_Mutation	3	32932211	C	A	29	58
BRCA	TCGA-A8-A06Q	TTC21A	SNP	Missense_Mutation	3	39156150	G	A	41	40
BRCA	TCGA-A8-A06Q	C3orf77	SNP	Missense_Mutation	3	44285586	G	A	45	56
BRCA	TCGA-A8-A06Q	FAM208A	SNP	Missense_Mutation	3	56667593	C	T	30	65
BRCA	TCGA-A8-A06Q	CENPE	SNP	Nonsense_Mutation	4	104064461	C	A	29	58
BRCA	TCGA-A8-A06Q	INTU	SNP	Missense_Mutation	4	128554244	G	A	33	61
BRCA	TCGA-A8-A06Q	GYPB	SNP	Missense_Mutation	4	144922404	C	T	29	52
BRCA	TCGA-A8-A06Q	MAB21L2	SNP	Missense_Mutation	4	151504703	C	G	29	87
BRCA	TCGA-A8-A06Q	MAB21L2	SNP	Missense_Mutation	4	151504936	C	T	29	100
BRCA	TCGA-A8-A06Q	CCDC111	SNP	Nonsense_Mutation	4	185593491	G	T	41	55
BRCA	TCGA-A8-A06Q	TNIP2	SNP	Silent	4	2747221	A	T	5	45
BRCA	TCGA-A8-A06Q	DTHD1	SNP	Missense_Mutation	4	36310067	G	A	33	71
BRCA	TCGA-A8-A06Q	ZBTB49	SNP	Silent	4	4301738	C	T	26	51
BRCA	TCGA-A8-A06Q	FRYL	SNP	Missense_Mutation	4	48597671	C	T	31	100
BRCA	TCGA-A8-A06Q	ADAMTS3	SNP	Missense_Mutation	4	73205317	C	T	30	71
BRCA	TCGA-A8-A06Q	PCDHA4	SNP	Missense_Mutation	5	140186860	C	G	29	71
BRCA	TCGA-A8-A06Q	PCDHA4	SNP	Missense_Mutation	5	140187308	C	T	32	58
BRCA	TCGA-A8-A06Q	CYFIP2	SNP	Missense_Mutation	5	156746888	G	A	40	100
BRCA	TCGA-A8-A06Q	EBF1	SNP	Nonsense_Mutation	5	158135082	G	C	45	99
BRCA	TCGA-A8-A06Q	AGXT2L2	SNP	Missense_Mutation	5	177656971	T	G	55	62
BRCA	TCGA-A8-A06Q	CLK4	SNP	Missense_Mutation	5	178050303	C	G	32	85
BRCA	TCGA-A8-A06Q	C5orf60	SNP	Missense_Mutation	5	179069426	C	T	27	54
BRCA	TCGA-A8-A06Q	SPEF2	SNP	Silent	5	35814583	C	T	30	49
BRCA	TCGA-A8-A06Q	PIK3R1	SNP	Missense_Mutation	5	67586647	G	C	33	91
BRCA	TCGA-A8-A06Q	PREP	SNP	Missense_Mutation	6	105726196	G	C	45	76
BRCA	TCGA-A8-A06Q	TAAR5	SNP	Missense_Mutation	6	132910300	C	G	32	75
BRCA	TCGA-A8-A06Q	ADGB	SNP	Missense_Mutation	6	146993405	G	A	45	61
BRCA	TCGA-A8-A06Q	ZNF184	SNP	Missense_Mutation	6	27419990	C	T	32	79
BRCA	TCGA-A8-A06Q	HIST1H2AJ	SNP	Silent	6	27782387	G	A	37	41
BRCA	TCGA-A8-A06Q	BTBD9	SNP	Missense_Mutation	6	38548069	G	A	41	85
BRCA	TCGA-A8-A06Q	TMEM63B	DEL	Frame_Shift_Del	6	44122458	A	-	7	53
BRCA	TCGA-A8-A06Q	TMEM63B	DEL	Frame_Shift_Del	6	44122461	G	-	35	50
BRCA	TCGA-A8-A06Q	MUC17	SNP	Missense_Mutation	7	100696407	G	A	38	43
BRCA	TCGA-A8-A06Q	SH2B2	SNP	Missense_Mutation	7	101960937	G	A	38	79
BRCA	TCGA-A8-A06Q	PLXNA4	SNP	Missense_Mutation	7	131925880	C	T	23	56
BRCA	TCGA-A8-A06Q	LUC7L2	SNP	Missense_Mutation	7	139094321	G	A	45	76
BRCA	TCGA-A8-A06Q	ZNF862	DEL	Frame_Shift_Del	7	149558908	G	-	35	69
BRCA	TCGA-A8-A06Q	AGAP3	SNP	Missense_Mutation	7	150819866	C	T	30	71
BRCA	TCGA-A8-A06Q	SCRN1	SNP	Silent	7	29963714	C	T	29	54
BRCA	TCGA-A8-A06Q	BAZ1B	SNP	Missense_Mutation	7	72891207	C	T	32	81
BRCA	TCGA-A8-A06Q	PCLO	SNP	Missense_Mutation	7	82390716	C	T	32	100
BRCA	TCGA-A8-A06Q	GRM3	SNP	Missense_Mutation	7	86415715	G	C	45	100
BRCA	TCGA-A8-A06Q	CDK14	SNP	Missense_Mutation	7	90492537	G	A	45	95
BRCA	TCGA-A8-A06Q	CPSF4	SNP	Missense_Mutation	7	99049996	G	A	37	95
BRCA	TCGA-A8-A06Q	INTS9	SNP	Silent	8	28627432	C	T	30	95
BRCA	TCGA-A8-A06Q	DUSP26	SNP	Missense_Mutation	8	33449726	C	G	32	72
BRCA	TCGA-A8-A06Q	TGS1	SNP	Missense_Mutation	8	56699303	G	C	33	61
BRCA	TCGA-A8-A06Q	EYA1	SNP	Splice_Site	8	72246524	C	T	30	48
BRCA	TCGA-A8-A06Q	SLC44A1	SNP	Missense_Mutation	9	108123558	G	C	45	59
BRCA	TCGA-A8-A06Q	SVEP1	SNP	Silent	9	113168448	C	T	29	60
BRCA	TCGA-A8-A06Q	IFNA13	SNP	Missense_Mutation	9	21367456	C	T	32	49
BRCA	TCGA-A8-A06Q	TOPORS	SNP	Missense_Mutation	9	32543678	G	A	45	83
BRCA	TCGA-A8-A06Q	TLN1	SNP	Missense_Mutation	9	35720063	C	G	32	80
BRCA	TCGA-A8-A06R	GPR52	SNP	Nonsense_Mutation	1	174417939	C	A	26	62
BRCA	TCGA-A8-A06R	AXDND1	SNP	Missense_Mutation	1	179452320	T	G	51	52
BRCA	TCGA-A8-A06R	TPR	SNP	Splice_site	1	186287865	C	T	24	98
BRCA	TCGA-A8-A06R	TMEM125	SNP	Missense_Mutation	1	43738829	G	A	38	52
BRCA	TCGA-A8-A06R	PNLIP	SNP	Missense_Mutation	10	118315541	T	G	56	43
BRCA	TCGA-A8-A06R	DHTKD1	SNP	Missense_Mutation	10	12136161	C	T	19	83
BRCA	TCGA-A8-A06R	NSUN6	SNP	Missense_Mutation	10	18931451	G	A	48	86
BRCA	TCGA-A8-A06R	DNA2	SNP	Missense_Mutation	10	70218891	G	A	37	69
BRCA	TCGA-A8-A06R	PALD1	SNP	Missense_Mutation	10	72285804	G	A	40	53
BRCA	TCGA-A8-A06R	PTEN	DEL	Frame_Shift_Del	10	89720799	TACT	-	57	76
BRCA	TCGA-A8-A06R	DSCAML1	SNP	Splice_Site	11	117342753	T	C	55	88
BRCA	TCGA-A8-A06R	TSG101	SNP	Missense_Mutation	11	18531179	T	C	51	78
BRCA	TCGA-A8-A06R	NUP160	DEL	Frame_Shift_Del	11	47859145	CT	-	20	91
BRCA	TCGA-A8-A06R	ERP29	SNP	Missense_Mutation	12	112460034	C	T	23	71
BRCA	TCGA-A8-A06R	LRTM2	SNP	Silent	12	1943503	C	A	21	59
BRCA	TCGA-A8-A06R	LRTM2	SNP	Missense_Mutation	12	1943594	C	T	30	73
BRCA	TCGA-A8-A06R	CACNA2D4	SNP	Silent	12	1949960	C	T	29	44
BRCA	TCGA-A8-A06R	SSPN	SNP	Silent	12	26383694	C	T	23	40
BRCA	TCGA-A8-A06R	HSD17B6	SNP	Silent	12	57181033	T	A	53	50
BRCA	TCGA-A8-A06R	MBD6	SNP	Missense_Mutation	12	57918847	A	G	16	56
BRCA	TCGA-A8-A06R	USP44	SNP	Missense_Mutation	12	95926958	C	T	21	93
BRCA	TCGA-A8-A06R	PDS5B	SNP	Silent	13	33275522	C	T	29	50
BRCA	TCGA-A8-A06R	UCHL3	SNP	Missense_Mutation	13	76141383	A	G	1	74
BRCA	TCGA-A8-A06R	DYNC1H1	SNP	Missense_Mutation	14	102452147	A	G	9	93
BRCA	TCGA-A8-A06R	SALL2	SNP	Silent	14	21991858	G	A	33	57
BRCA	TCGA-A8-A06R	LRRC16B	SNP	Silent	14	24528876	T	G	53	51
BRCA	TCGA-A8-A06R	SNW1	SNP	Nonsense_Mutation	14	78205185	G	A	48	87
BRCA	TCGA-A8-A06R	DIS3L	SNP	Nonsense_Mutation	15	66618592	G	A	43	53
BRCA	TCGA-A8-A06R	TPSAB1	SNP	Silent	16	1291188	C	T	31	34
BRCA	TCGA-A8-A06R	BRIP1	SNP	Splice_Site	17	59821953	C	G	20	95
BRCA	TCGA-A8-A06R	TTYH2	SNP	Missense_Mutation	17	72248454	G	T	38	74
BRCA	TCGA-A8-A06R	DSG4	DEL	In_Frame_Del	18	28972180	TCT	-	50	73
BRCA	TCGA-A8-A06R	FFAR1	SNP	Silent	19	35843060	C	T	19	47
BRCA	TCGA-A8-A06R	MAP2K2	SNP	Silent	19	4101062	G	T	37	51
BRCA	TCGA-A8-A06R	MUC16	DEL	Frame_Shift_Del	19	9048936	AA	-	9	51
BRCA	TCGA-A8-A06R	NEB	DEL	In_Frame_Del	2	152375530	CTT	-	24	50
BRCA	TCGA-A8-A06R	BARD1	SNP	Silent	2	215657118	C	T	23	55
BRCA	TCGA-A8-A06R	STON1-GTF2A1L	SNP	Silent	2	48809392	C	T	19	51
BRCA	TCGA-A8-A06R	NRXN1	SNP	Missense_Mutation	2	50850528	G	A	46	100
BRCA	TCGA-A8-A06R	SLC24A3	SNP	Missense_Mutation	20	19560658	C	G	32	57
BRCA	TCGA-A8-A06R	HPS4	SNP	Silent	22	26860227	T	G	55	44
BRCA	TCGA-A8-A06R	CUL4B	SNP	Missense_Mutation	23	119694135	G	C	41	94
BRCA	TCGA-A8-A06R	USP51	SNP	Missense_Mutation	23	55513981	G	C	48	63
BRCA	TCGA-A8-A06R	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A8-A06R	LRRN1	SNP	Missense_Mutation	3	3888104	A	C	3	58
BRCA	TCGA-A8-A06R	RBM5	SNP	Nonsense_Mutation	3	50154522	C	T	23	52
BRCA	TCGA-A8-A06R	WHSC1	SNP	Missense_Mutation	4	1920229	A	G	10	61
BRCA	TCGA-A8-A06R	SNCAIP	SNP	Missense_Mutation	5	121758575	G	C	34	57
BRCA	TCGA-A8-A06R	RBM27	SNP	Missense_Mutation	5	145641353	A	G	6	77
BRCA	TCGA-A8-A06R	FAM71B	SNP	Missense_Mutation	5	156589516	C	T	20	40
BRCA	TCGA-A8-A06R	MAML1	SNP	Missense_Mutation	5	179195873	C	T	24	70
BRCA	TCGA-A8-A06R	PRLR	SNP	Missense_Mutation	5	35086314	C	T	30	94
BRCA	TCGA-A8-A06R	PRDM1	SNP	Missense_Mutation	6	106553776	G	A	38	52
BRCA	TCGA-A8-A06R	HLA-C	SNP	Missense_Mutation	6	31238880	C	T	30	75
BRCA	TCGA-A8-A06R	PEX6	SNP	Missense_Mutation	6	42932852	C	T	23	87
BRCA	TCGA-A8-A06R	MDN1	SNP	Missense_Mutation	6	90426511	C	G	29	95
BRCA	TCGA-A8-A06R	KLHL7	SNP	Missense_Mutation	7	23163424	T	G	58	87
BRCA	TCGA-A8-A06R	BAIAP2L1	SNP	Missense_Mutation	7	97933530	G	A	41	71
BRCA	TCGA-A8-A06R	MYBL1	SNP	Splice_site	8	67485600	C	T	24	93
BRCA	TCGA-A8-A06R	ZFHX4	SNP	Missense_Mutation	8	77620135	A	G	1	92
BRCA	TCGA-A8-A06R	NR4A3	SNP	Silent	9	102609749	C	T	32	81
BRCA	TCGA-A8-A06R	GRIN3A	SNP	Silent	9	104499857	C	T	29	60
BRCA	TCGA-A8-A06T	MTOR	SNP	Silent	1	11187855	C	T	24	61
BRCA	TCGA-A8-A06T	RC3H1	SNP	Missense_Mutation	1	173930909	T	C	49	68
BRCA	TCGA-A8-A06T	SIPA1L2	SNP	Missense_Mutation	1	232596654	T	A	51	79
BRCA	TCGA-A8-A06T	NLRP3	SNP	Silent	1	247587783	G	A	46	54
BRCA	TCGA-A8-A06T	EIF3I	SNP	Missense_Mutation	1	32691811	G	A	39	95
BRCA	TCGA-A8-A06T	C10orf71	SNP	Missense_Mutation	10	50531374	C	T	26	48
BRCA	TCGA-A8-A06T	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-A8-A06T	LRP4	SNP	Missense_Mutation	11	46894951	C	T	26	100
BRCA	TCGA-A8-A06T	ARID2	SNP	Missense_Mutation	12	46246210	C	T	29	75
BRCA	TCGA-A8-A06T	KCNC2	SNP	Missense_Mutation	12	75601451	C	A	31	80
BRCA	TCGA-A8-A06T	ZFHX2	SNP	Missense_Mutation	14	23991682	G	A	39	57
BRCA	TCGA-A8-A06T	ARG2	SNP	Missense_Mutation	14	68117462	T	C	58	88
BRCA	TCGA-A8-A06T	TJP1	INS	Frame_Shift_Ins	15	30012801	-	AA	29	100
BRCA	TCGA-A8-A06T	COG7	SNP	Silent	16	23428334	G	A	35	75
BRCA	TCGA-A8-A06T	PPL	SNP	Missense_Mutation	16	4939022	T	C	55	89
BRCA	TCGA-A8-A06T	C16orf89	SNP	Silent	16	5110367	C	T	21	58
BRCA	TCGA-A8-A06T	KRT39	DEL	Frame_Shift_Del	17	39120738	T	-	52	66
BRCA	TCGA-A8-A06T	ABCA6	SNP	Missense_Mutation	17	67110993	G	C	45	56
BRCA	TCGA-A8-A06T	ZFP161	SNP	Missense_Mutation	18	5290912	G	A	38	86
BRCA	TCGA-A8-A06T	NETO1	SNP	Missense_Mutation	18	70526294	C	A	25	100
BRCA	TCGA-A8-A06T	B3GNT3	SNP	Missense_Mutation	19	17922578	G	C	33	50
BRCA	TCGA-A8-A06T	APOB	SNP	Missense_Mutation	2	21231263	T	C	54	77
BRCA	TCGA-A8-A06T	ASXL2	DEL	Frame_Shift_Del	2	25978944	G	-	35	64
BRCA	TCGA-A8-A06T	SERTAD2	SNP	Missense_Mutation	2	64863109	C	T	21	70
BRCA	TCGA-A8-A06T	C2orf78	SNP	Missense_Mutation	2	74011468	C	T	30	52
BRCA	TCGA-A8-A06T	PLCB4	SNP	Missense_Mutation	20	9382205	C	G	29	87
BRCA	TCGA-A8-A06T	PRMT2	SNP	Missense_Mutation	21	48063504	G	A	33	76
BRCA	TCGA-A8-A06T	SEC14L4	SNP	Silent	22	30891391	G	A	40	47
BRCA	TCGA-A8-A06T	SLITRK2	SNP	Missense_Mutation	23	144903965	C	A	24	74
BRCA	TCGA-A8-A06T	ANK2	SNP	Missense_Mutation	4	114275601	G	A	39	56
BRCA	TCGA-A8-A06T	EPB41L4A	DEL	In_Frame_Del	5	111500728	TTG	-	52	47
BRCA	TCGA-A8-A06T	AKAP9	SNP	Missense_Mutation	7	91630169	A	T	12	68
BRCA	TCGA-A8-A06T	RBM12B	SNP	Missense_Mutation	8	94746354	T	G	59	62
BRCA	TCGA-A8-A06T	FAM214B	SNP	Missense_Mutation	9	35107628	T	G	54	55
BRCA	TCGA-A8-A06U	MST1P9	SNP	Missense_Mutation	1	17087465	G	A	43	53
BRCA	TCGA-A8-A06U	ARHGEF10L	SNP	Missense_Mutation	1	17949564	G	A	38	91
BRCA	TCGA-A8-A06U	HMCN1	SNP	Splice_site	1	186123119	G	T	35	96
BRCA	TCGA-A8-A06U	TPR	SNP	Missense_Mutation	1	186315302	C	G	29	79
BRCA	TCGA-A8-A06U	DENND1B	SNP	Missense_Mutation	1	197611863	A	C	4	86
BRCA	TCGA-A8-A06U	DUSP5P	SNP	Silent	1	228786335	C	T	30	53
BRCA	TCGA-A8-A06U	SPRTN	SNP	Missense_Mutation	1	231488908	A	G	1	68
BRCA	TCGA-A8-A06U	PTGFR	SNP	Missense_Mutation	1	78958991	A	C	14	75
BRCA	TCGA-A8-A06U	UPF2	SNP	Nonsense_Mutation	10	12071392	G	C	45	99
BRCA	TCGA-A8-A06U	PCDH15	SNP	Silent	10	55582296	A	G	1	50
BRCA	TCGA-A8-A06U	KIAA1377	SNP	Missense_Mutation	11	101829065	C	A	20	72
BRCA	TCGA-A8-A06U	HPS5	SNP	Missense_Mutation	11	18339303	G	C	33	66
BRCA	TCGA-A8-A06U	LRP4	SNP	Silent	11	46880600	T	C	58	56
BRCA	TCGA-A8-A06U	OR10AG1	SNP	Missense_Mutation	11	55735564	C	A	20	48
BRCA	TCGA-A8-A06U	ACTN3	SNP	Silent	11	66318787	T	C	51	48
BRCA	TCGA-A8-A06U	RBM4	SNP	Silent	11	66411228	C	T	23	45
BRCA	TCGA-A8-A06U	SSH3	SNP	Silent	11	67077326	C	T	19	45
BRCA	TCGA-A8-A06U	ODZ4	SNP	Nonsense_Mutation	11	78412585	C	T	30	100
BRCA	TCGA-A8-A06U	METAP2	DNP	Missense_Mutation	12	95888899	GG	TT	47	97
BRCA	TCGA-A8-A06U	AHNAK2	SNP	Silent	14	105415953	G	A	39	18
BRCA	TCGA-A8-A06U	NIN	SNP	Missense_Mutation	14	51288724	A	C	5	61
BRCA	TCGA-A8-A06U	SPTB	DEL	In_Frame_Del	14	65216860	GTT	-	44	51
BRCA	TCGA-A8-A06U	TUBGCP5	SNP	Missense_Mutation	15	22861776	C	G	32	96
BRCA	TCGA-A8-A06U	TUBGCP5	SNP	Missense_Mutation	15	22861790	C	G	32	74
BRCA	TCGA-A8-A06U	TUBGCP5	SNP	Missense_Mutation	15	22861814	C	G	30	49
BRCA	TCGA-A8-A06U	HERC2	SNP	Missense_Mutation	15	28421694	C	T	30	87
BRCA	TCGA-A8-A06U	SLC12A1	SNP	Splice_Site	15	48580714	G	A	48	95
BRCA	TCGA-A8-A06U	FBN1	SNP	Silent	15	48703385	G	A	45	64
BRCA	TCGA-A8-A06U	CHD2	SNP	Silent	15	93545466	G	A	33	75
BRCA	TCGA-A8-A06U	TEKT5	SNP	Silent	16	10788482	G	A	39	8
BRCA	TCGA-A8-A06U	MYH4	SNP	Missense_Mutation	17	10366448	A	G	16	92
BRCA	TCGA-A8-A06U	KRT35	SNP	Missense_Mutation	17	39637093	C	T	26	80
BRCA	TCGA-A8-A06U	CNTNAP1	SNP	Silent	17	40847561	G	A	39	25
BRCA	TCGA-A8-A06U	ABCA9	SNP	Missense_Mutation	17	66982354	C	T	27	71
BRCA	TCGA-A8-A06U	TP53	DEL	Frame_Shift_Del	17	7578222	TC	-	62	47
BRCA	TCGA-A8-A06U	FCGBP	SNP	Missense_Mutation	19	40374034	A	G	6	54
BRCA	TCGA-A8-A06U	SYMPK	SNP	Silent	19	46332317	G	A	39	42
BRCA	TCGA-A8-A06U	FUT2	SNP	Silent	19	49206810	T	C	51	49
BRCA	TCGA-A8-A06U	TTN	SNP	Nonsense_Mutation	2	179408032	C	T	21	100
BRCA	TCGA-A8-A06U	TTN	SNP	Nonsense_Mutation	2	179442793	G	A	39	58
BRCA	TCGA-A8-A06U	ABCG5	SNP	Missense_Mutation	2	44052105	G	A	40	56
BRCA	TCGA-A8-A06U	FKSG73	SNP	Missense_Mutation	2	92129634	G	C	44	78
BRCA	TCGA-A8-A06U	ZNF341	SNP	Missense_Mutation	20	32378997	C	T	22	54
BRCA	TCGA-A8-A06U	ZNF831	SNP	Silent	20	57769143	G	A	43	50
BRCA	TCGA-A8-A06U	UMODL1	SNP	Silent	21	43508466	C	T	19	50
BRCA	TCGA-A8-A06U	KRTAP10-8	SNP	Missense_Mutation	21	46032028	C	T	26	53
BRCA	TCGA-A8-A06U	BTK	SNP	Missense_Mutation	23	100613405	C	T	19	74
BRCA	TCGA-A8-A06U	TEX11	SNP	Silent	23	69773227	A	G	5	46
BRCA	TCGA-A8-A06U	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A06U	LYZL4	SNP	Missense_Mutation	3	42448361	T	G	60	52
BRCA	TCGA-A8-A06U	HTR1F	SNP	Missense_Mutation	3	88039975	G	C	44	58
BRCA	TCGA-A8-A06U	ZNF827	SNP	Silent	4	146807134	A	G	6	53
BRCA	TCGA-A8-A06U	RFC1	SNP	Missense_Mutation	4	39314522	T	C	49	49
BRCA	TCGA-A8-A06U	OCIAD1	SNP	Splice_Site	4	48835499	G	A	48	79
BRCA	TCGA-A8-A06U	USO1	SNP	Missense_Mutation	4	76703933	G	A	45	98
BRCA	TCGA-A8-A06U	HERC5	SNP	Missense_Mutation	4	89390392	C	T	19	54
BRCA	TCGA-A8-A06U	PCDHGA12	SNP	Missense_Mutation	5	140811927	C	T	27	83
BRCA	TCGA-A8-A06U	GPR98	SNP	Missense_Mutation	5	90050985	G	A	37	56
BRCA	TCGA-A8-A06U	SLC35F1	SNP	Missense_Mutation	6	118556692	A	C	4	68
BRCA	TCGA-A8-A06U	TXLNB	SNP	Missense_Mutation	6	139563701	G	A	38	60
BRCA	TCGA-A8-A06U	ULBP2	SNP	Silent	6	150266509	T	C	59	50
BRCA	TCGA-A8-A06U	TSPO2	SNP	Missense_Mutation	6	41011722	C	T	17	46
BRCA	TCGA-A8-A06U	F13A1	SNP	Silent	6	6206822	G	A	41	55
BRCA	TCGA-A8-A06U	TBX18	SNP	Missense_Mutation	6	85448248	T	G	58	90
BRCA	TCGA-A8-A06U	GJA10	SNP	Silent	6	90604250	G	T	47	60
BRCA	TCGA-A8-A06U	RHEB	SNP	Missense_Mutation	7	151188068	C	T	24	96
BRCA	TCGA-A8-A06U	DNAH11	SNP	Silent	7	21744132	T	C	59	51
BRCA	TCGA-A8-A06U	UPP1	SNP	Missense_Mutation	7	48147911	G	A	39	64
BRCA	TCGA-A8-A06U	SGK196	SNP	Missense_Mutation	8	42977743	T	C	55	74
BRCA	TCGA-A8-A06U	DAB2IP	SNP	Missense_Mutation	9	124521225	G	A	45	97
BRCA	TCGA-A8-A06U	VCP	SNP	Silent	9	35062319	A	C	6	52
BRCA	TCGA-A8-A06U	DOCK8	DEL	Frame_Shift_Del	9	429793	C	-	18	80
BRCA	TCGA-A8-A06X	NMNAT1	SNP	Missense_Mutation	1	10042669	G	T	34	57
BRCA	TCGA-A8-A06X	COL11A1	SNP	Missense_Mutation	1	103412494	C	G	21	100
BRCA	TCGA-A8-A06X	KIF1B	SNP	Missense_Mutation	1	10356711	C	G	29	76
BRCA	TCGA-A8-A06X	TARDBP	SNP	Missense_Mutation	1	11082428	C	T	26	100
BRCA	TCGA-A8-A06X	CHIA	SNP	Missense_Mutation	1	111861257	C	A	28	78
BRCA	TCGA-A8-A06X	ATP5F1	SNP	Missense_Mutation	1	111996910	G	T	41	94
BRCA	TCGA-A8-A06X	DDX20	SNP	Missense_Mutation	1	112305306	G	A	40	96
BRCA	TCGA-A8-A06X	SPAG17	SNP	Silent	1	118535191	C	T	23	37
BRCA	TCGA-A8-A06X	PRDM2	SNP	Missense_Mutation	1	14108179	A	T	3	92
BRCA	TCGA-A8-A06X	PRKAB2	SNP	Silent	1	146639408	G	T	46	60
BRCA	TCGA-A8-A06X	HIST2H3D	SNP	Silent	1	149784973	C	T	23	49
BRCA	TCGA-A8-A06X	LCE1C	SNP	Missense_Mutation	1	152777887	T	A	56	66
BRCA	TCGA-A8-A06X	OR6K3	SNP	Missense_Mutation	1	158687160	A	T	16	59
BRCA	TCGA-A8-A06X	DDR2	SNP	Silent	1	162729697	C	T	19	45
BRCA	TCGA-A8-A06X	TAS1R2	SNP	Silent	1	19180890	G	C	35	60
BRCA	TCGA-A8-A06X	PIK3C2B	SNP	Missense_Mutation	1	204401416	G	C	41	100
BRCA	TCGA-A8-A06X	HSD11B1	SNP	Missense_Mutation	1	209879201	G	T	43	85
BRCA	TCGA-A8-A06X	KIF17	SNP	Missense_Mutation	1	21009345	C	T	30	94
BRCA	TCGA-A8-A06X	FAM71A	SNP	Missense_Mutation	1	212799050	G	C	35	56
BRCA	TCGA-A8-A06X	VASH2	SNP	Missense_Mutation	1	213146056	G	A	38	100
BRCA	TCGA-A8-A06X	MIA3	SNP	Missense_Mutation	1	222802425	A	T	4	51
BRCA	TCGA-A8-A06X	SPRTN	SNP	Missense_Mutation	1	231489020	T	A	51	31
BRCA	TCGA-A8-A06X	NID1	SNP	Missense_Mutation	1	236211995	C	G	24	58
BRCA	TCGA-A8-A06X	ASAP3	SNP	Missense_Mutation	1	23760009	G	T	38	66
BRCA	TCGA-A8-A06X	MYOM3	SNP	Missense_Mutation	1	24408594	C	T	19	64
BRCA	TCGA-A8-A06X	KIF26B	SNP	Missense_Mutation	1	245849668	C	A	23	100
BRCA	TCGA-A8-A06X	PTPRU	SNP	Missense_Mutation	1	29642551	C	T	26	96
BRCA	TCGA-A8-A06X	ZMPSTE24	SNP	Missense_Mutation	1	40751696	A	G	15	87
BRCA	TCGA-A8-A06X	INADL	SNP	Missense_Mutation	1	62380272	T	C	57	51
BRCA	TCGA-A8-A06X	F3	SNP	Silent	1	95001579	G	T	39	18
BRCA	TCGA-A8-A06X	CCDC147	SNP	Missense_Mutation	10	106214245	C	G	20	62
BRCA	TCGA-A8-A06X	FAM171A1	SNP	Silent	10	15255094	C	A	25	58
BRCA	TCGA-A8-A06X	SKIDA1	SNP	Silent	10	21805345	G	A	47	79
BRCA	TCGA-A8-A06X	ANKRD26	SNP	Splice_Site	10	27326984	C	G	32	79
BRCA	TCGA-A8-A06X	WAC	SNP	Missense_Mutation	10	28897337	T	C	59	90
BRCA	TCGA-A8-A06X	FAM21B	SNP	Silent	10	47946862	G	A	35	62
BRCA	TCGA-A8-A06X	TAF3	SNP	Nonsense_Mutation	10	8005972	G	T	41	98
BRCA	TCGA-A8-A06X	GRID1	SNP	Missense_Mutation	10	87966202	C	T	19	88
BRCA	TCGA-A8-A06X	TNKS2	SNP	Missense_Mutation	10	93579042	A	T	12	94
BRCA	TCGA-A8-A06X	ATM	SNP	Missense_Mutation	11	108119728	T	G	59	54
BRCA	TCGA-A8-A06X	ARHGAP20	SNP	Missense_Mutation	11	110450859	G	T	34	53
BRCA	TCGA-A8-A06X	OR8B12	SNP	Silent	11	124412711	T	A	53	50
BRCA	TCGA-A8-A06X	MUC5B	SNP	Silent	11	1272402	C	A	30	51
BRCA	TCGA-A8-A06X	FEN1	SNP	Missense_Mutation	11	61563621	T	A	56	91
BRCA	TCGA-A8-A06X	CPT1A	SNP	Missense_Mutation	11	68566804	G	C	35	97
BRCA	TCGA-A8-A06X	B3GNT6	SNP	Missense_Mutation	11	76750962	G	A	44	56
BRCA	TCGA-A8-A06X	MYO7A	SNP	Missense_Mutation	11	76870558	T	A	50	50
BRCA	TCGA-A8-A06X	GAB2	SNP	Missense_Mutation	11	77991673	C	T	26	100
BRCA	TCGA-A8-A06X	NARS2	SNP	Missense_Mutation	11	78277247	C	A	30	54
BRCA	TCGA-A8-A06X	NOX4	SNP	Silent	11	89073285	T	C	54	54
BRCA	TCGA-A8-A06X	DEPDC4	DNP	Missense_Mutation	12	100660824	GC	CT	34	42
BRCA	TCGA-A8-A06X	CMKLR1	SNP	Missense_Mutation	12	108685671	A	T	10	68
BRCA	TCGA-A8-A06X	WDR66	SNP	Missense_Mutation	12	122404947	G	A	38	63
BRCA	TCGA-A8-A06X	PIWIL1	SNP	Missense_Mutation	12	130839517	G	A	40	74
BRCA	TCGA-A8-A06X	ULK1	DEL	In_Frame_Del	12	132391450	CTG	-	32	76
BRCA	TCGA-A8-A06X	POLE	SNP	Missense_Mutation	12	133226044	G	T	46	100
BRCA	TCGA-A8-A06X	TMTC1	SNP	Missense_Mutation	12	29904777	G	T	43	58
BRCA	TCGA-A8-A06X	ADAMTS20	SNP	Missense_Mutation	12	43821169	T	G	54	89
BRCA	TCGA-A8-A06X	FGF23	SNP	Missense_Mutation	12	4479691	C	T	19	66
BRCA	TCGA-A8-A06X	KRT77	SNP	Silent	12	53086263	G	A	34	62
BRCA	TCGA-A8-A06X	TPI1	SNP	Missense_Mutation	12	6979542	C	A	17	55
BRCA	TCGA-A8-A06X	OTOGL	SNP	Missense_Mutation	12	80726854	G	A	48	74
BRCA	TCGA-A8-A06X	ITGBL1	SNP	Splice_site	13	102220051	C	G	26	64
BRCA	TCGA-A8-A06X	GRTP1	SNP	Missense_Mutation	13	114009727	G	T	42	91
BRCA	TCGA-A8-A06X	AKT1	SNP	Silent	14	105238714	C	A	17	49
BRCA	TCGA-A8-A06X	CTSG	SNP	Missense_Mutation	14	25043693	C	A	20	42
BRCA	TCGA-A8-A06X	SYNE2	SNP	Missense_Mutation	14	64445702	A	C	4	50
BRCA	TCGA-A8-A06X	ISM2	SNP	Silent	14	77942031	G	A	40	47
BRCA	TCGA-A8-A06X	CHGA	SNP	Silent	14	93392991	C	A	21	58
BRCA	TCGA-A8-A06X	BDKRB1	SNP	Missense_Mutation	14	96730334	C	G	31	50
BRCA	TCGA-A8-A06X	LYSMD4	SNP	Missense_Mutation	15	100269704	C	G	22	63
BRCA	TCGA-A8-A06X	ADAMTS17	SNP	Missense_Mutation	15	100739614	C	T	24	82
BRCA	TCGA-A8-A06X	PLCB2	SNP	Missense_Mutation	15	40589083	G	T	42	51
BRCA	TCGA-A8-A06X	SPINT1	SNP	Silent	15	41148157	C	T	24	54
BRCA	TCGA-A8-A06X	CGNL1	SNP	Missense_Mutation	15	57731735	C	T	20	57
BRCA	TCGA-A8-A06X	MEGF11	SNP	Missense_Mutation	15	66416295	G	C	45	100
BRCA	TCGA-A8-A06X	ACSBG1	DNP	Missense_Mutation	15	78474936	CC	AG	22	98
BRCA	TCGA-A8-A06X	ADAMTS7	SNP	Silent	15	79064140	G	T	38	23
BRCA	TCGA-A8-A06X	ACSM5	SNP	Missense_Mutation	16	20439155	A	T	8	47
BRCA	TCGA-A8-A06X	DNAH3	SNP	Silent	16	21117908	T	C	61	51
BRCA	TCGA-A8-A06X	SRCAP	SNP	Silent	16	30724858	G	A	45	48
BRCA	TCGA-A8-A06X	AHSP	SNP	Missense_Mutation	16	31539996	C	A	21	54
BRCA	TCGA-A8-A06X	ZNF174	SNP	Missense_Mutation	16	3452203	C	G	28	73
BRCA	TCGA-A8-A06X	PKD1L2	SNP	Missense_Mutation	16	81232281	G	A	34	65
BRCA	TCGA-A8-A06X	MYH13	SNP	Missense_Mutation	17	10212947	C	A	32	74
BRCA	TCGA-A8-A06X	CDRT1	SNP	Silent	17	15508674	T	A	62	51
BRCA	TCGA-A8-A06X	COPS3	SNP	Missense_Mutation	17	17168210	T	C	49	77
BRCA	TCGA-A8-A06X	NF1	SNP	Missense_Mutation	17	29576081	A	G	7	77
BRCA	TCGA-A8-A06X	CCT6B	SNP	Missense_Mutation	17	33266673	C	T	25	68
BRCA	TCGA-A8-A06X	ERBB2	SNP	Silent	17	37879581	G	T	40	36
BRCA	TCGA-A8-A06X	NT5C3L	SNP	Missense_Mutation	17	39988648	C	G	30	86
BRCA	TCGA-A8-A06X	GGA3	SNP	Missense_Mutation	17	73242652	C	A	19	88
BRCA	TCGA-A8-A06X	EVPL	SNP	Missense_Mutation	17	74003870	G	C	43	51
BRCA	TCGA-A8-A06X	CD68	DEL	Splice_Site	17	7483164	CAG	-	29	79
BRCA	TCGA-A8-A06X	ABR	SNP	Silent	17	960314	C	T	21	61
BRCA	TCGA-A8-A06X	CEP192	SNP	Missense_Mutation	18	13117605	G	A	33	83
BRCA	TCGA-A8-A06X	MIB1	SNP	Missense_Mutation	18	19348617	G	C	33	61
BRCA	TCGA-A8-A06X	SLC39A6	SNP	Missense_Mutation	18	33691076	C	T	17	73
BRCA	TCGA-A8-A06X	ZNF532	SNP	Silent	18	56585741	C	T	23	26
BRCA	TCGA-A8-A06X	RTTN	DEL	Splice_site	18	67809622	AACTACAAACCAAAAAAAA	-	5	53
BRCA	TCGA-A8-A06X	NETO1	SNP	Missense_Mutation	18	70416292	C	T	29	98
BRCA	TCGA-A8-A06X	TYK2	SNP	Silent	19	10475418	C	T	27	54
BRCA	TCGA-A8-A06X	CPAMD8	SNP	Silent	19	17040007	A	G	8	45
BRCA	TCGA-A8-A06X	FKBP8	SNP	Silent	19	18648426	G	A	33	46
BRCA	TCGA-A8-A06X	LSR	SNP	Missense_Mutation	19	35758063	C	T	30	56
BRCA	TCGA-A8-A06X	POLR2I	SNP	Silent	19	36604687	G	A	43	49
BRCA	TCGA-A8-A06X	ZNF565	SNP	Missense_Mutation	19	36674042	C	T	31	93
BRCA	TCGA-A8-A06X	EEF2	SNP	Missense_Mutation	19	3982420	G	C	37	33
BRCA	TCGA-A8-A06X	ERF	SNP	Missense_Mutation	19	42752723	C	T	19	61
BRCA	TCGA-A8-A06X	TMIGD2	SNP	Silent	19	4292764	C	T	27	47
BRCA	TCGA-A8-A06X	RTN2	SNP	Missense_Mutation	19	45997999	A	C	7	66
BRCA	TCGA-A8-A06X	GYS1	SNP	Missense_Mutation	19	49481193	G	C	33	66
BRCA	TCGA-A8-A06X	KIR3DL2	SNP	Missense_Mutation	19	55367355	G	C	48	46
BRCA	TCGA-A8-A06X	ZNF835	SNP	Missense_Mutation	19	57176288	C	A	26	51
BRCA	TCGA-A8-A06X	ACSBG2	SNP	Missense_Mutation	19	6183250	C	T	19	82
BRCA	TCGA-A8-A06X	ZNF426	SNP	Missense_Mutation	19	9639594	G	A	41	46
BRCA	TCGA-A8-A06X	SLC9A4	SNP	Missense_Mutation	2	103095669	G	T	42	100
BRCA	TCGA-A8-A06X	ANAPC1	SNP	Missense_Mutation	2	112608454	G	T	41	82
BRCA	TCGA-A8-A06X	MGAT5	SNP	Nonsense_Mutation	2	135107491	C	T	25	100
BRCA	TCGA-A8-A06X	TTN	SNP	Missense_Mutation	2	179613547	T	C	60	56
BRCA	TCGA-A8-A06X	PMS1	SNP	Missense_Mutation	2	190728500	C	G	19	61
BRCA	TCGA-A8-A06X	DNAH7	SNP	Missense_Mutation	2	196682525	G	C	35	98
BRCA	TCGA-A8-A06X	HECW2	SNP	Silent	2	197189776	G	A	35	50
BRCA	TCGA-A8-A06X	CCDC150	SNP	Splice_Site	2	197540865	A	T	7	63
BRCA	TCGA-A8-A06X	PGAP1	SNP	Missense_Mutation	2	197710731	G	A	36	62
BRCA	TCGA-A8-A06X	MPP4	SNP	Splice_site	2	202514888	T	C	58	87
BRCA	TCGA-A8-A06X	PARD3B	DEL	Frame_Shift_Del	2	206023581	GACTTGGG	-	33	99
BRCA	TCGA-A8-A06X	CPS1	SNP	Missense_Mutation	2	211459261	A	G	13	46
BRCA	TCGA-A8-A06X	STRN	SNP	Missense_Mutation	2	37121173	C	T	17	64
BRCA	TCGA-A8-A06X	THADA	SNP	Missense_Mutation	2	43514063	G	T	44	52
BRCA	TCGA-A8-A06X	SIX2	SNP	Missense_Mutation	2	45236119	T	A	59	88
BRCA	TCGA-A8-A06X	USP34	SNP	Missense_Mutation	2	61528234	G	T	47	100
BRCA	TCGA-A8-A06X	CD207	SNP	Silent	2	71062661	G	A	34	58
BRCA	TCGA-A8-A06X	DOK1	SNP	Silent	2	74783920	C	T	26	57
BRCA	TCGA-A8-A06X	REG3A	SNP	Missense_Mutation	2	79384383	C	G	24	41
BRCA	TCGA-A8-A06X	SYCP2	SNP	Silent	20	58452593	G	T	45	50
BRCA	TCGA-A8-A06X	TMPRSS15	SNP	Missense_Mutation	21	19713777	A	T	3	48
BRCA	TCGA-A8-A06X	TMPRSS15	SNP	Missense_Mutation	21	19770634	C	G	30	50
BRCA	TCGA-A8-A06X	AGPAT3	SNP	Splice_site	21	45400871	A	T	10	90
BRCA	TCGA-A8-A06X	COL6A1	SNP	Missense_Mutation	21	47421277	C	A	28	55
BRCA	TCGA-A8-A06X	PPIL2	SNP	Missense_Mutation	22	22048108	C	A	29	51
BRCA	TCGA-A8-A06X	C22orf23	SNP	Missense_Mutation	22	38349110	A	T	9	60
BRCA	TCGA-A8-A06X	PIH1D3	SNP	Silent	23	106486492	T	G	53	47
BRCA	TCGA-A8-A06X	DCAF12L1	SNP	Missense_Mutation	23	125685742	C	T	23	82
BRCA	TCGA-A8-A06X	FAM45B	SNP	Missense_Mutation	23	129630013	A	G	11	60
BRCA	TCGA-A8-A06X	EGFL6	DEL	In_Frame_Del	23	13624525	TCA	-	58	59
BRCA	TCGA-A8-A06X	BMX	SNP	Missense_Mutation	23	15552435	A	G	16	83
BRCA	TCGA-A8-A06X	HUWE1	SNP	Missense_Mutation	23	53573667	C	G	32	97
BRCA	TCGA-A8-A06X	ACRC	SNP	Missense_Mutation	23	70828945	A	T	2	74
BRCA	TCGA-A8-A06X	CYLC1	SNP	Missense_Mutation	23	83129611	C	G	21	56
BRCA	TCGA-A8-A06X	HCLS1	SNP	Nonsense_Mutation	3	121376169	C	A	22	89
BRCA	TCGA-A8-A06X	ADCY5	SNP	Splice_site	3	123015062	G	C	43	62
BRCA	TCGA-A8-A06X	EFCAB12	SNP	Missense_Mutation	3	129130116	T	A	64	51
BRCA	TCGA-A8-A06X	PLOD2	SNP	Silent	3	145794677	T	A	49	49
BRCA	TCGA-A8-A06X	C3orf20	SNP	Missense_Mutation	3	14744664	G	T	34	47
BRCA	TCGA-A8-A06X	PLCL2	SNP	Missense_Mutation	3	17052777	T	C	62	92
BRCA	TCGA-A8-A06X	THRB	SNP	Missense_Mutation	3	24169035	C	T	29	100
BRCA	TCGA-A8-A06X	AZI2	SNP	Silent	3	28365572	G	A	36	75
BRCA	TCGA-A8-A06X	CNTN4	SNP	Missense_Mutation	3	3078956	T	C	59	53
BRCA	TCGA-A8-A06X	SCN10A	SNP	Missense_Mutation	3	38802768	T	A	60	56
BRCA	TCGA-A8-A06X	SCN11A	SNP	Missense_Mutation	3	38888484	C	T	18	99
BRCA	TCGA-A8-A06X	ABHD5	SNP	Splice_site	3	43740768	G	A	44	75
BRCA	TCGA-A8-A06X	ATXN7	SNP	Missense_Mutation	3	63965690	C	T	25	61
BRCA	TCGA-A8-A06X	POU4F2	SNP	Missense_Mutation	4	147561487	G	T	38	86
BRCA	TCGA-A8-A06X	GPM6A	SNP	Missense_Mutation	4	176594836	C	T	27	85
BRCA	TCGA-A8-A06X	ATOH1	SNP	Missense_Mutation	4	94750843	G	A	42	52
BRCA	TCGA-A8-A06X	PCDHB12	DNP	Missense_Mutation	5	140588975	GC	TT	46	40
BRCA	TCGA-A8-A06X	PCDHGB3	SNP	Missense_Mutation	5	140750980	A	T	9	61
BRCA	TCGA-A8-A06X	PCDHGA6	SNP	Silent	5	140755396	A	C	7	51
BRCA	TCGA-A8-A06X	FCHSD1	SNP	Nonsense_Mutation	5	141025749	G	A	40	63
BRCA	TCGA-A8-A06X	PLEKHG4B	SNP	Silent	5	151657	C	T	32	51
BRCA	TCGA-A8-A06X	COL23A1	SNP	Missense_Mutation	5	177666152	C	T	25	82
BRCA	TCGA-A8-A06X	COL23A1	SNP	Missense_Mutation	5	177669352	C	T	19	56
BRCA	TCGA-A8-A06X	CDH12	SNP	Missense_Mutation	5	21975210	C	A	17	96
BRCA	TCGA-A8-A06X	LAMA4	SNP	Missense_Mutation	6	112512916	G	A	40	69
BRCA	TCGA-A8-A06X	ROS1	SNP	Splice_Site	6	117629955	A	G	14	89
BRCA	TCGA-A8-A06X	EDN1	SNP	Missense_Mutation	6	12294286	G	T	33	93
BRCA	TCGA-A8-A06X	PHACTR2	SNP	Missense_Mutation	6	144081565	C	T	23	84
BRCA	TCGA-A8-A06X	ZBTB2	SNP	Missense_Mutation	6	151687437	G	A	42	88
BRCA	TCGA-A8-A06X	C6orf70	SNP	Missense_Mutation	6	170168259	C	T	26	71
BRCA	TCGA-A8-A06X	PIM1	SNP	Missense_Mutation	6	37139098	C	A	28	71
BRCA	TCGA-A8-A06X	DST	SNP	Splice_Site	6	56394933	T	C	53	93
BRCA	TCGA-A8-A06X	DST	SNP	Missense_Mutation	6	56438665	C	T	29	77
BRCA	TCGA-A8-A06X	GJA10	SNP	Silent	6	90605438	G	T	43	45
BRCA	TCGA-A8-A06X	TRIM56	SNP	Missense_Mutation	7	100732118	C	G	23	70
BRCA	TCGA-A8-A06X	MET	SNP	Missense_Mutation	7	116339812	G	A	44	100
BRCA	TCGA-A8-A06X	POT1	SNP	Missense_Mutation	7	124481227	T	A	62	78
BRCA	TCGA-A8-A06X	PLXNA4	SNP	Silent	7	131982949	G	T	41	50
BRCA	TCGA-A8-A06X	OR9A4	SNP	Silent	7	141618801	A	T	7	20
BRCA	TCGA-A8-A06X	CLCN1	SNP	Missense_Mutation	7	143029922	C	T	23	54
BRCA	TCGA-A8-A06X	ZNF398	SNP	Missense_Mutation	7	148876070	C	A	22	70
BRCA	TCGA-A8-A06X	MLL3	INS	Frame_Shift_Ins	7	151855981	-	CTTGT	36	49
BRCA	TCGA-A8-A06X	MLL3	INS	In_Frame_Ins	7	151855984	-	TCT	17	60
BRCA	TCGA-A8-A06X	AHR	SNP	Missense_Mutation	7	17349613	G	C	33	100
BRCA	TCGA-A8-A06X	PKD1L1	SNP	Silent	7	47917120	G	A	39	53
BRCA	TCGA-A8-A06X	PKD1L1	SNP	Missense_Mutation	7	47921626	C	G	30	55
BRCA	TCGA-A8-A06X	PCLO	DNP	Missense_Mutation	7	82545243	CT	AC	28	100
BRCA	TCGA-A8-A06X	SEMA3A	SNP	Silent	7	83675755	T	G	54	53
BRCA	TCGA-A8-A06X	TFPI2	SNP	Missense_Mutation	7	93519536	G	A	39	57
BRCA	TCGA-A8-A06X	KCNV1	SNP	Missense_Mutation	8	110984688	C	A	17	86
BRCA	TCGA-A8-A06X	CSMD3	SNP	Silent	8	113237153	T	G	59	53
BRCA	TCGA-A8-A06X	ATAD2	SNP	Silent	8	124360463	T	C	59	48
BRCA	TCGA-A8-A06X	ADCY8	SNP	Silent	8	131792944	G	T	39	77
BRCA	TCGA-A8-A06X	XPO7	SNP	Splice_Site	8	21842351	G	A	44	100
BRCA	TCGA-A8-A06X	PLAT	SNP	Splice_site	8	42050632	C	G	24	75
BRCA	TCGA-A8-A06X	RP1	SNP	Missense_Mutation	8	55538958	A	C	5	54
BRCA	TCGA-A8-A06X	PENK	SNP	Missense_Mutation	8	57354286	G	T	34	59
BRCA	TCGA-A8-A06X	ABCA1	SNP	Missense_Mutation	9	107589387	C	A	17	58
BRCA	TCGA-A8-A06X	PKN3	SNP	Missense_Mutation	9	131475817	C	T	27	55
BRCA	TCGA-A8-A06X	IFNE	SNP	Silent	9	21481118	G	A	35	55
BRCA	TCGA-A8-A06Y	MTOR	SNP	Missense_Mutation	1	11169377	T	A	50	86
BRCA	TCGA-A8-A06Y	SZT2	SNP	Splice_Site	1	43908290	G	A	44	78
BRCA	TCGA-A8-A06Y	EXOC6	SNP	Missense_Mutation	10	94653227	G	C	33	100
BRCA	TCGA-A8-A06Y	PPFIBP2	SNP	Silent	11	7672916	C	G	22	42
BRCA	TCGA-A8-A06Y	SCYL2	SNP	Nonsense_Mutation	12	100676854	C	T	31	73
BRCA	TCGA-A8-A06Y	OR11H6	SNP	Missense_Mutation	14	20692496	G	T	46	57
BRCA	TCGA-A8-A06Y	PRPF39	SNP	Missense_Mutation	14	45579794	A	C	9	55
BRCA	TCGA-A8-A06Y	TC2N	DNP	Silent	14	92265374	GA	CT	33	63
BRCA	TCGA-A8-A06Y	GOLGA5	SNP	Missense_Mutation	14	93273140	G	T	48	49
BRCA	TCGA-A8-A06Y	CLPX	SNP	Missense_Mutation	15	65450966	T	A	50	70
BRCA	TCGA-A8-A06Y	TXNDC11	SNP	Missense_Mutation	16	11792021	G	T	35	78
BRCA	TCGA-A8-A06Y	USP31	SNP	Missense_Mutation	16	23085124	C	A	18	97
BRCA	TCGA-A8-A06Y	CCT6B	SNP	Splice_Site	17	33269814	C	T	19	61
BRCA	TCGA-A8-A06Y	ABCA8	SNP	Silent	17	66873755	G	A	40	49
BRCA	TCGA-A8-A06Y	RYR1	SNP	Missense_Mutation	19	38933047	G	A	37	89
BRCA	TCGA-A8-A06Y	GALNT13	SNP	Missense_Mutation	2	155157929	A	G	5	90
BRCA	TCGA-A8-A06Y	NDUFAF5	SNP	Missense_Mutation	20	13769239	T	G	64	87
BRCA	TCGA-A8-A06Y	KIF3B	SNP	Silent	20	30898744	C	T	25	63
BRCA	TCGA-A8-A06Y	CBLN4	SNP	Missense_Mutation	20	54579007	G	A	37	87
BRCA	TCGA-A8-A06Y	ASCC2	SNP	Missense_Mutation	22	30189409	T	C	57	74
BRCA	TCGA-A8-A06Y	GAB3	SNP	Missense_Mutation	23	153928295	C	T	23	79
BRCA	TCGA-A8-A06Y	DMD	SNP	Silent	23	32867884	G	T	42	60
BRCA	TCGA-A8-A06Y	KDM6A	DEL	Frame_Shift_Del	23	44911035	T	-	56	67
BRCA	TCGA-A8-A06Y	NEK11	SNP	Missense_Mutation	3	131068491	G	A	33	62
BRCA	TCGA-A8-A06Y	GABRA1	SNP	Missense_Mutation	5	161309644	C	A	19	67
BRCA	TCGA-A8-A06Y	FAM120B	DEL	In_Frame_Del	6	170626796	CAAGAA	-	29	49
BRCA	TCGA-A8-A06Y	HIST1H4J	SNP	Missense_Mutation	6	27792030	G	T	42	90
BRCA	TCGA-A8-A06Y	CYTH3	SNP	Silent	7	6210236	C	T	23	39
BRCA	TCGA-A8-A06Y	SAMD9	SNP	Missense_Mutation	7	92733834	G	A	45	68
BRCA	TCGA-A8-A06Y	DKK4	SNP	Missense_Mutation	8	42234500	C	A	30	65
BRCA	TCGA-A8-A06Z	CHD1L	SNP	Missense_Mutation	1	146766140	G	C	44	89
BRCA	TCGA-A8-A06Z	PLXNA2	SNP	Missense_Mutation	1	208257849	C	T	31	66
BRCA	TCGA-A8-A06Z	KIF26B	SNP	Missense_Mutation	1	245530376	G	A	40	49
BRCA	TCGA-A8-A06Z	AJAP1	SNP	Missense_Mutation	1	4771985	C	G	23	53
BRCA	TCGA-A8-A06Z	BCAR3	SNP	Missense_Mutation	1	94140474	T	G	64	83
BRCA	TCGA-A8-A06Z	SLC25A28	SNP	Missense_Mutation	10	101370803	G	C	48	59
BRCA	TCGA-A8-A06Z	DMBT1	SNP	Missense_Mutation	10	124402730	T	A	62	52
BRCA	TCGA-A8-A06Z	SGPL1	SNP	Silent	10	72631650	C	A	29	65
BRCA	TCGA-A8-A06Z	TM9SF3	SNP	Missense_Mutation	10	98303943	T	A	50	90
BRCA	TCGA-A8-A06Z	RRP12	SNP	Silent	10	99130710	C	T	27	17
BRCA	TCGA-A8-A06Z	SPTY2D1	SNP	Silent	11	18636798	G	A	47	59
BRCA	TCGA-A8-A06Z	CKAP5	SNP	Silent	11	46839992	A	G	8	70
BRCA	TCGA-A8-A06Z	NLRP10	SNP	Missense_Mutation	11	7982171	C	A	30	56
BRCA	TCGA-A8-A06Z	SLC5A8	SNP	Missense_Mutation	12	101560338	G	A	48	60
BRCA	TCGA-A8-A06Z	GNPTAB	SNP	Missense_Mutation	12	102179874	A	G	9	50
BRCA	TCGA-A8-A06Z	CHST11	SNP	Silent	12	105151386	C	T	19	62
BRCA	TCGA-A8-A06Z	RNF10	SNP	Missense_Mutation	12	121013640	A	G	11	89
BRCA	TCGA-A8-A06Z	GRIN2B	SNP	Splice_site	12	13906251	C	G	24	95
BRCA	TCGA-A8-A06Z	PLCZ1	SNP	Missense_Mutation	12	18854640	C	G	18	59
BRCA	TCGA-A8-A06Z	PARP11	SNP	Silent	12	3939170	T	C	56	57
BRCA	TCGA-A8-A06Z	MLL2	SNP	Silent	12	49436409	A	G	12	55
BRCA	TCGA-A8-A06Z	KITLG	SNP	Missense_Mutation	12	88939581	T	C	62	58
BRCA	TCGA-A8-A06Z	PLEKHH1	DEL	Frame_Shift_Del	14	68029176	A	-	12	55
BRCA	TCGA-A8-A06Z	DICER1	SNP	Missense_Mutation	14	95574771	C	A	18	99
BRCA	TCGA-A8-A06Z	CHRNB4	SNP	Silent	15	78921528	G	A	39	37
BRCA	TCGA-A8-A06Z	CLEC16A	SNP	Missense_Mutation	16	11076751	A	T	8	86
BRCA	TCGA-A8-A06Z	SLC7A6OS	SNP	Missense_Mutation	16	68337945	C	A	28	70
BRCA	TCGA-A8-A06Z	RPL13	SNP	Missense_Mutation	16	89629419	C	T	26	97
BRCA	TCGA-A8-A06Z	GRIN2A	SNP	Missense_Mutation	16	9858117	G	T	43	95
BRCA	TCGA-A8-A06Z	MYH2	SNP	Missense_Mutation	17	10436645	C	A	24	100
BRCA	TCGA-A8-A06Z	ERBB2	SNP	Missense_Mutation	17	37868205	G	C	41	76
BRCA	TCGA-A8-A06Z	SDK2	SNP	Missense_Mutation	17	71427674	C	A	18	78
BRCA	TCGA-A8-A06Z	DNAH17	SNP	Missense_Mutation	17	76459120	C	T	19	98
BRCA	TCGA-A8-A06Z	CDH20	SNP	Missense_Mutation	18	59221671	G	A	38	53
BRCA	TCGA-A8-A06Z	KIRREL2	SNP	Silent	19	36357208	C	T	25	52
BRCA	TCGA-A8-A06Z	YIF1B	SNP	Silent	19	38799894	C	A	21	53
BRCA	TCGA-A8-A06Z	ZNF616	SNP	Missense_Mutation	19	52618711	C	A	32	57
BRCA	TCGA-A8-A06Z	ZFP28	SNP	Nonsense_Mutation	19	57066546	G	T	47	58
BRCA	TCGA-A8-A06Z	TTN	SNP	Silent	2	179604295	C	A	22	48
BRCA	TCGA-A8-A06Z	NRP2	SNP	Missense_Mutation	2	206659554	G	C	33	56
BRCA	TCGA-A8-A06Z	RAE1	SNP	Missense_Mutation	20	55949808	A	G	4	93
BRCA	TCGA-A8-A06Z	SLC5A4	SNP	Missense_Mutation	22	32621791	T	G	60	66
BRCA	TCGA-A8-A06Z	MEI1	SNP	Missense_Mutation	22	42166957	A	C	8	72
BRCA	TCGA-A8-A06Z	ZMAT1	SNP	Missense_Mutation	23	101152870	G	T	46	50
BRCA	TCGA-A8-A06Z	FRMPD4	SNP	Missense_Mutation	23	12627986	G	A	38	81
BRCA	TCGA-A8-A06Z	GPR50	SNP	Missense_Mutation	23	150348636	G	T	46	68
BRCA	TCGA-A8-A06Z	ASB9	SNP	Missense_Mutation	23	15272920	T	C	51	77
BRCA	TCGA-A8-A06Z	HUWE1	SNP	Silent	23	53573461	G	A	48	80
BRCA	TCGA-A8-A06Z	HDX	SNP	Silent	23	83724020	G	A	42	49
BRCA	TCGA-A8-A06Z	ZNF711	SNP	Missense_Mutation	23	84525674	G	T	45	84
BRCA	TCGA-A8-A06Z	SLC41A3	SNP	Missense_Mutation	3	125787006	C	A	28	48
BRCA	TCGA-A8-A06Z	TMEM14E	SNP	Missense_Mutation	3	152058621	C	T	24	50
BRCA	TCGA-A8-A06Z	SETD2	SNP	Silent	3	47084164	G	A	33	56
BRCA	TCGA-A8-A06Z	KIF9	SNP	Missense_Mutation	3	47284720	C	G	24	58
BRCA	TCGA-A8-A06Z	GLT8D1	SNP	Missense_Mutation	3	52729266	G	C	34	85
BRCA	TCGA-A8-A06Z	FLNB	SNP	Silent	3	58067421	C	T	22	54
BRCA	TCGA-A8-A06Z	OR5H1	SNP	Silent	3	97851850	G	A	40	42
BRCA	TCGA-A8-A06Z	OR5H15	DEL	Frame_Shift_Del	3	97888342	G	-	34	49
BRCA	TCGA-A8-A06Z	ATP10D	SNP	Missense_Mutation	4	47574191	A	G	15	91
BRCA	TCGA-A8-A06Z	AFAP1	SNP	Missense_Mutation	4	7820870	C	A	20	59
BRCA	TCGA-A8-A06Z	POU4F3	SNP	Missense_Mutation	5	145719165	G	A	34	89
BRCA	TCGA-A8-A06Z	SLC30A5	SNP	Missense_Mutation	5	68413160	T	C	61	91
BRCA	TCGA-A8-A06Z	FAM169A	SNP	Splice_Site	5	74096704	C	G	20	63
BRCA	TCGA-A8-A06Z	TNS3	SNP	Missense_Mutation	7	47333397	G	A	46	96
BRCA	TCGA-A8-A06Z	PCLO	SNP	Missense_Mutation	7	82764006	G	T	44	49
BRCA	TCGA-A8-A06Z	GRHL2	SNP	Missense_Mutation	8	102570972	C	T	32	60
BRCA	TCGA-A8-A06Z	RPL7	SNP	Silent	8	74204933	G	T	43	59
BRCA	TCGA-A8-A06Z	PPP2R4	SNP	Missense_Mutation	9	131885350	G	C	41	98
BRCA	TCGA-A8-A06Z	PPP2R4	SNP	Missense_Mutation	9	131885381	G	T	35	70
BRCA	TCGA-A8-A06Z	WDR5	SNP	Silent	9	137021657	T	A	63	73
BRCA	TCGA-A8-A075	PRAMEF2	SNP	Missense_Mutation	1	12921147	T	C	54	55
BRCA	TCGA-A8-A075	NCSTN	SNP	Silent	1	160327968	C	T	30	61
BRCA	TCGA-A8-A075	RGS4	SNP	Missense_Mutation	1	163043400	G	C	35	57
BRCA	TCGA-A8-A075	FAM5C	SNP	Silent	1	190068153	C	T	24	71
BRCA	TCGA-A8-A075	ATP2B4	SNP	Missense_Mutation	1	203702418	G	T	44	66
BRCA	TCGA-A8-A075	ZSCAN20	SNP	Missense_Mutation	1	33956633	G	T	36	55
BRCA	TCGA-A8-A075	MACF1	DEL	Frame_Shift_Del	1	39797635	ATAATCTGATTGACCAAGAT	-	8	63
BRCA	TCGA-A8-A075	ZNF642	SNP	Missense_Mutation	1	40947462	T	A	57	52
BRCA	TCGA-A8-A075	H6PD	SNP	Missense_Mutation	1	9322166	A	C	7	87
BRCA	TCGA-A8-A075	PITRM1	SNP	Missense_Mutation	10	3181215	T	A	55	68
BRCA	TCGA-A8-A075	NRP1	SNP	Missense_Mutation	10	33502337	C	T	30	100
BRCA	TCGA-A8-A075	NRP1	SNP	Nonsense_Mutation	10	33545247	C	A	32	100
BRCA	TCGA-A8-A075	PDE6C	SNP	Missense_Mutation	10	95422824	A	T	11	71
BRCA	TCGA-A8-A075	SBF2	SNP	Missense_Mutation	11	10014057	T	G	62	92
BRCA	TCGA-A8-A075	CEP164	SNP	Missense_Mutation	11	117263223	C	G	26	59
BRCA	TCGA-A8-A075	ARHGEF12	SNP	Nonsense_Mutation	11	120352172	G	T	43	65
BRCA	TCGA-A8-A075	RPLP0P2	SNP	Missense_Mutation	11	61404918	A	T	12	60
BRCA	TCGA-A8-A075	TRIM3	SNP	Missense_Mutation	11	6478096	G	T	39	94
BRCA	TCGA-A8-A075	ARHGDIB	SNP	Missense_Mutation	12	15095600	C	A	20	57
BRCA	TCGA-A8-A075	LRMP	SNP	Missense_Mutation	12	25254214	G	T	44	60
BRCA	TCGA-A8-A075	KRT86	SNP	Silent	12	52700002	C	G	21	83
BRCA	TCGA-A8-A075	NCKAP1L	SNP	Missense_Mutation	12	54917613	G	A	41	95
BRCA	TCGA-A8-A075	STAT6	SNP	Silent	12	57500358	G	A	33	57
BRCA	TCGA-A8-A075	CYP27B1	SNP	Missense_Mutation	12	58159202	C	T	30	50
BRCA	TCGA-A8-A075	LRIG3	SNP	Missense_Mutation	12	59271267	G	C	34	100
BRCA	TCGA-A8-A075	CDK17	SNP	Missense_Mutation	12	96728499	T	C	52	69
BRCA	TCGA-A8-A075	LCP1	SNP	Missense_Mutation	13	46701847	G	A	33	100
BRCA	TCGA-A8-A075	IGHG3	SNP	Silent	14	106237474	G	C	46	50
BRCA	TCGA-A8-A075	CASC4	SNP	Missense_Mutation	15	44630015	C	G	29	58
BRCA	TCGA-A8-A075	WDR93	SNP	Silent	15	90258281	C	T	22	44
BRCA	TCGA-A8-A075		SNP	Silent	16	18433315	C	T	27	50
BRCA	TCGA-A8-A075	RBBP6	SNP	Missense_Mutation	16	24582488	T	G	59	48
BRCA	TCGA-A8-A075	ZNF434	SNP	Missense_Mutation	16	3432953	G	A	45	51
BRCA	TCGA-A8-A075	COL1A1	SNP	Missense_Mutation	17	48270012	G	T	43	67
BRCA	TCGA-A8-A075	SDK2	SNP	Silent	17	71410870	G	A	40	47
BRCA	TCGA-A8-A075	TP53	SNP	Splice_Site	17	7578370	C	A	18	81
BRCA	TCGA-A8-A075	LDLR	SNP	Silent	19	11213440	C	T	19	39
BRCA	TCGA-A8-A075	CPAMD8	SNP	Missense_Mutation	19	17015133	A	G	7	84
BRCA	TCGA-A8-A075	FBXO17	SNP	Missense_Mutation	19	39409429	C	T	32	89
BRCA	TCGA-A8-A075	GPR108	SNP	Splice_site	19	6731903	C	T	24	58
BRCA	TCGA-A8-A075	MUC16	SNP	Missense_Mutation	19	9057075	G	C	37	47
BRCA	TCGA-A8-A075	MUC16	SNP	Silent	19	9064046	G	A	35	52
BRCA	TCGA-A8-A075	MYO7B	SNP	Missense_Mutation	2	128386057	G	T	42	77
BRCA	TCGA-A8-A075	COL5A2	SNP	Missense_Mutation	2	189898939	G	A	38	66
BRCA	TCGA-A8-A075	SF3B1	SNP	Nonsense_Mutation	2	198274677	C	A	22	100
BRCA	TCGA-A8-A075	FASTKD2	SNP	Missense_Mutation	2	207656516	G	C	34	55
BRCA	TCGA-A8-A075	NFU1	SNP	Silent	2	69642366	A	G	5	66
BRCA	TCGA-A8-A075	SEMA4F	SNP	Silent	2	74902498	C	G	32	50
BRCA	TCGA-A8-A075	ANKRD36	SNP	Missense_Mutation	2	97866080	G	A	39	43
BRCA	TCGA-A8-A075	EDEM2	SNP	Missense_Mutation	20	33711728	G	T	48	100
BRCA	TCGA-A8-A075	DDX27	SNP	Nonsense_Mutation	20	47839853	G	T	41	57
BRCA	TCGA-A8-A075	SLC5A4	SNP	Silent	22	32631034	C	T	29	80
BRCA	TCGA-A8-A075	HTATSF1	SNP	Missense_Mutation	23	135594126	G	A	42	53
BRCA	TCGA-A8-A075	ATRX	DEL	Frame_Shift_Del	23	76949382	C	-	32	87
BRCA	TCGA-A8-A075	SHROOM2	SNP	Missense_Mutation	23	9863794	G	A	40	55
BRCA	TCGA-A8-A075	SPSB4	SNP	Silent	3	140785393	C	G	32	59
BRCA	TCGA-A8-A075	PIK3CA	SNP	Missense_Mutation	3	178928079	G	A	33	98
BRCA	TCGA-A8-A075	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A8-A075	ZNF501	DEL	Frame_Shift_Del	3	44776563	TTTATAAGTG	-	56	51
BRCA	TCGA-A8-A075	TRPC3	SNP	Silent	4	122853549	G	A	45	62
BRCA	TCGA-A8-A075	KIAA0232	SNP	Missense_Mutation	4	6865167	G	T	33	78
BRCA	TCGA-A8-A075	ANKRD17	SNP	Missense_Mutation	4	74124127	C	T	31	70
BRCA	TCGA-A8-A075	SYCP2L	SNP	Silent	6	10926595	C	T	32	36
BRCA	TCGA-A8-A075	HS3ST5	SNP	Missense_Mutation	6	114378677	G	A	35	100
BRCA	TCGA-A8-A075	SFRS3	SNP	Splice_site	6	36564541	T	A	51	92
BRCA	TCGA-A8-A075	SFRS3	SNP	Missense_Mutation	6	36564556	G	T	48	100
BRCA	TCGA-A8-A075	RUNX2	SNP	Silent	6	45513000	C	T	29	62
BRCA	TCGA-A8-A075	PRIM2	SNP	Missense_Mutation	6	57244754	G	A	36	48
BRCA	TCGA-A8-A075	KHDRBS2	SNP	Silent	6	62390919	C	T	27	14
BRCA	TCGA-A8-A075	CYB5R4	SNP	Missense_Mutation	6	84574045	G	C	33	96
BRCA	TCGA-A8-A075	NT5E	SNP	Missense_Mutation	6	86201757	C	G	32	82
BRCA	TCGA-A8-A075	DDX56	SNP	Silent	7	44612006	G	A	45	55
BRCA	TCGA-A8-A075	ABCA13	SNP	Missense_Mutation	7	48315435	C	G	20	57
BRCA	TCGA-A8-A075	PCLO	SNP	Missense_Mutation	7	82582602	G	A	41	94
BRCA	TCGA-A8-A075	TMEM74	SNP	Missense_Mutation	8	109796543	C	T	31	100
BRCA	TCGA-A8-A075	SCRT1	SNP	Missense_Mutation	8	145559756	G	A	40	69
BRCA	TCGA-A8-A075	CYHR1	SNP	Missense_Mutation	8	145678614	C	T	25	97
BRCA	TCGA-A8-A075	RGS20	SNP	Missense_Mutation	8	54866817	G	C	33	99
BRCA	TCGA-A8-A075	YTHDF3	SNP	Missense_Mutation	8	64099880	C	G	32	73
BRCA	TCGA-A8-A075	TMEM70	SNP	Missense_Mutation	8	74893669	A	G	12	89
BRCA	TCGA-A8-A075	SMC2	SNP	Missense_Mutation	9	106887243	G	A	33	94
BRCA	TCGA-A8-A075	ADAMTSL1	SNP	Missense_Mutation	9	18906875	A	C	2	66
BRCA	TCGA-A8-A075	STOML2	SNP	Silent	9	35101259	C	T	30	69
BRCA	TCGA-A8-A075	FAM166B	SNP	Missense_Mutation	9	35562545	G	A	39	60
BRCA	TCGA-A8-A075	RNF38	SNP	Silent	9	36344831	A	G	3	53
BRCA	TCGA-A8-A075	DAPK1	SNP	Silent	9	90252867	T	A	59	50
BRCA	TCGA-A8-A075	SHC3	SNP	Missense_Mutation	9	91660705	C	T	30	63
BRCA	TCGA-A8-A076	TCEANC2	SNP	Silent	1	54561996	G	A	40	53
BRCA	TCGA-A8-A076	GAD2	SNP	Missense_Mutation	10	26534867	G	C	33	70
BRCA	TCGA-A8-A076	ANK3	SNP	Missense_Mutation	10	61830358	C	A	29	54
BRCA	TCGA-A8-A076	SFTPD	SNP	Missense_Mutation	10	81701721	G	C	48	60
BRCA	TCGA-A8-A076	TMPRSS13	SNP	Missense_Mutation	11	117774452	C	G	26	95
BRCA	TCGA-A8-A076	PCF11	SNP	Missense_Mutation	11	82877321	C	G	17	67
BRCA	TCGA-A8-A076	GNPTAB	SNP	Missense_Mutation	12	102159934	T	C	50	89
BRCA	TCGA-A8-A076	ACACB	SNP	Missense_Mutation	12	109704092	C	A	26	53
BRCA	TCGA-A8-A076	CIT	SNP	Missense_Mutation	12	120173024	C	A	20	100
BRCA	TCGA-A8-A076	DUSP16	SNP	Nonsense_Mutation	12	12630478	G	C	36	62
BRCA	TCGA-A8-A076	SLCO1B7	SNP	Missense_Mutation	12	21196298	G	A	40	74
BRCA	TCGA-A8-A076	MLL2	SNP	Missense_Mutation	12	49427744	G	A	39	99
BRCA	TCGA-A8-A076	LRP1	SNP	Missense_Mutation	12	57573216	G	A	37	95
BRCA	TCGA-A8-A076	SRGAP1	SNP	Missense_Mutation	12	64519802	G	A	39	100
BRCA	TCGA-A8-A076	FLT3	SNP	Missense_Mutation	13	28610163	C	T	27	56
BRCA	TCGA-A8-A076	PDS5B	SNP	Missense_Mutation	13	33273935	G	A	45	100
BRCA	TCGA-A8-A076	WDR20	SNP	Silent	14	102675570	C	A	19	72
BRCA	TCGA-A8-A076	TGM1	SNP	Silent	14	24718579	G	A	40	31
BRCA	TCGA-A8-A076	BAZ1A	SNP	Missense_Mutation	14	35240774	T	C	52	52
BRCA	TCGA-A8-A076	SAMD15	SNP	Missense_Mutation	14	77844210	T	G	62	45
BRCA	TCGA-A8-A076	OTOA	SNP	Silent	16	21712289	G	A	40	43
BRCA	TCGA-A8-A076	HYDIN	SNP	Missense_Mutation	16	70977777	C	T	23	87
BRCA	TCGA-A8-A076	MYO18A	SNP	Missense_Mutation	17	27493334	G	A	43	50
BRCA	TCGA-A8-A076	RPL19	SNP	Silent	17	37358625	G	A	39	46
BRCA	TCGA-A8-A076	AOC3	SNP	Nonsense_Mutation	17	41003862	C	T	23	52
BRCA	TCGA-A8-A076	BRIP1	SNP	Missense_Mutation	17	59763364	G	A	33	54
BRCA	TCGA-A8-A076	HAS1	SNP	Missense_Mutation	19	52217341	G	A	41	87
BRCA	TCGA-A8-A076	ZNF266	SNP	Missense_Mutation	19	9525219	G	A	40	44
BRCA	TCGA-A8-A076	IL1RL2	SNP	Missense_Mutation	2	102851497	G	A	39	72
BRCA	TCGA-A8-A076	TRIB2	SNP	Missense_Mutation	2	12863563	G	A	41	98
BRCA	TCGA-A8-A076	TRAK2	SNP	Nonsense_Mutation	2	202260102	G	A	37	60
BRCA	TCGA-A8-A076	IKZF2	SNP	Silent	2	213872645	C	T	27	49
BRCA	TCGA-A8-A076	LTBP1	SNP	Missense_Mutation	2	33622241	G	C	39	100
BRCA	TCGA-A8-A076	XPNPEP3	SNP	Splice_site	22	41320367	C	A	28	78
BRCA	TCGA-A8-A076	GABRA3	SNP	Missense_Mutation	23	151376601	G	A	34	73
BRCA	TCGA-A8-A076	BSN	SNP	Silent	3	49701899	C	T	23	44
BRCA	TCGA-A8-A076	BBS7	SNP	Silent	4	122765151	A	G	8	66
BRCA	TCGA-A8-A076	TRIML1	SNP	Missense_Mutation	4	189068456	C	T	30	70
BRCA	TCGA-A8-A076	CDKL3	SNP	Missense_Mutation	5	133644137	C	A	28	53
BRCA	TCGA-A8-A076	KIAA0947	SNP	Missense_Mutation	5	5437196	T	A	52	56
BRCA	TCGA-A8-A076	FNDC1	SNP	Missense_Mutation	6	159646577	G	A	40	99
BRCA	TCGA-A8-A076	CUL7	SNP	Missense_Mutation	6	43016263	G	T	33	64
BRCA	TCGA-A8-A076	F13A1	SNP	Missense_Mutation	6	6197531	T	A	50	87
BRCA	TCGA-A8-A076	RIMS1	SNP	Missense_Mutation	6	73110213	G	A	33	100
BRCA	TCGA-A8-A076	MTO1	SNP	Missense_Mutation	6	74191938	A	T	12	92
BRCA	TCGA-A8-A076	MANEA	SNP	Missense_Mutation	6	96054057	G	A	38	98
BRCA	TCGA-A8-A076	PIK3CG	SNP	Missense_Mutation	7	106526628	G	C	36	88
BRCA	TCGA-A8-A076	LAMB4	SNP	Missense_Mutation	7	107717436	G	T	42	48
BRCA	TCGA-A8-A076	THSD7A	SNP	Missense_Mutation	7	11521471	G	A	40	76
BRCA	TCGA-A8-A076	LRGUK	SNP	Missense_Mutation	7	133884081	G	A	40	71
BRCA	TCGA-A8-A076	PKD1L1	SNP	Missense_Mutation	7	47852858	A	T	11	41
BRCA	TCGA-A8-A076	ZNF716	SNP	Nonsense_Mutation	7	57528714	A	T	9	72
BRCA	TCGA-A8-A076	RIMS2	SNP	Missense_Mutation	8	104955015	A	C	15	59
BRCA	TCGA-A8-A076	TNFRSF10A	SNP	Silent	8	23069723	G	A	37	38
BRCA	TCGA-A8-A076	ADAMDEC1	SNP	Missense_Mutation	8	24256522	A	G	9	48
BRCA	TCGA-A8-A076	CSMD1	SNP	Missense_Mutation	8	3266956	G	T	43	100
BRCA	TCGA-A8-A076	NSMAF	SNP	Missense_Mutation	8	59502584	G	T	33	94
BRCA	TCGA-A8-A076	LRSAM1	SNP	Missense_Mutation	9	130236137	A	G	12	73
BRCA	TCGA-A8-A079	HCN3	SNP	Missense_Mutation	1	155257006	G	A	39	94
BRCA	TCGA-A8-A079	OR2T6	SNP	Silent	1	248551590	G	A	33	50
BRCA	TCGA-A8-A079	KAT6B	SNP	Missense_Mutation	10	76748864	G	A	45	100
BRCA	TCGA-A8-A079	ANKS1B	SNP	Missense_Mutation	12	100206055	A	C	12	68
BRCA	TCGA-A8-A079	MYO1H	SNP	Missense_Mutation	12	109843800	C	A	26	78
BRCA	TCGA-A8-A079	CLIP1	SNP	Missense_Mutation	12	122848621	G	A	33	66
BRCA	TCGA-A8-A079	RIMBP2	SNP	Silent	12	130926628	G	A	39	40
BRCA	TCGA-A8-A079	RIMBP2	SNP	Silent	12	130927141	G	A	40	49
BRCA	TCGA-A8-A079	CNTN1	SNP	Missense_Mutation	12	41421662	C	T	24	92
BRCA	TCGA-A8-A079	LOC100289089	DEL	In_Frame_Del	15	26244768	TTT	-	56	60
BRCA	TCGA-A8-A079	SLC12A6	SNP	Missense_Mutation	15	34533532	C	G	32	68
BRCA	TCGA-A8-A079	FBN1	SNP	Silent	15	48704844	G	A	40	47
BRCA	TCGA-A8-A079	APH1B	SNP	Missense_Mutation	15	63594553	C	T	19	89
BRCA	TCGA-A8-A079	ADCY9	SNP	Missense_Mutation	16	4016237	C	T	23	100
BRCA	TCGA-A8-A079	DNAAF1	SNP	Silent	16	84203706	G	A	40	50
BRCA	TCGA-A8-A079	LGALS9B	SNP	Missense_Mutation	17	20356373	G	A	48	51
BRCA	TCGA-A8-A079	KCNJ12	SNP	Missense_Mutation	17	21319388	C	T	23	100
BRCA	TCGA-A8-A079	GJC1	SNP	Missense_Mutation	17	42883150	C	G	32	84
BRCA	TCGA-A8-A079	UBE2O	SNP	Missense_Mutation	17	74387082	G	A	40	50
BRCA	TCGA-A8-A079	TP53	SNP	Missense_Mutation	17	7578205	C	A	20	96
BRCA	TCGA-A8-A079	HAUS1	SNP	Missense_Mutation	18	43685277	G	T	41	84
BRCA	TCGA-A8-A079	CACNA1A	SNP	Missense_Mutation	19	13470592	G	A	39	60
BRCA	TCGA-A8-A079	SUPT5H	SNP	Missense_Mutation	19	39962333	G	T	46	97
BRCA	TCGA-A8-A079	NCR1	SNP	Missense_Mutation	19	55418015	G	A	40	37
BRCA	TCGA-A8-A079	ERCC3	SNP	Missense_Mutation	2	128051120	T	G	56	89
BRCA	TCGA-A8-A079	GALNT14	SNP	Silent	2	31165080	A	C	6	40
BRCA	TCGA-A8-A079	CPXM1	SNP	Splice_Site	20	2778613	C	T	20	80
BRCA	TCGA-A8-A079	CHD6	SNP	Silent	20	40033794	G	A	43	54
BRCA	TCGA-A8-A079	GTSE1	SNP	Missense_Mutation	22	46704569	A	T	11	79
BRCA	TCGA-A8-A079	FRMPD3	SNP	Silent	23	106769911	C	A	28	73
BRCA	TCGA-A8-A079	GPR101	SNP	Missense_Mutation	23	136113230	C	T	19	49
BRCA	TCGA-A8-A079	RP2	SNP	Nonsense_Mutation	23	46713075	C	A	25	54
BRCA	TCGA-A8-A079	CLSTN2	SNP	Silent	3	140277569	C	G	30	49
BRCA	TCGA-A8-A079	EIF4A2	SNP	Missense_Mutation	3	186505647	C	G	18	97
BRCA	TCGA-A8-A079	GPR78	SNP	Missense_Mutation	4	8588882	C	T	32	64
BRCA	TCGA-A8-A079	NDST1	SNP	Silent	5	149907411	C	T	24	70
BRCA	TCGA-A8-A079	HEATR7B2	SNP	Missense_Mutation	5	41049481	C	T	30	52
BRCA	TCGA-A8-A079	RPS10	SNP	Missense_Mutation	6	34389559	T	A	58	49
BRCA	TCGA-A8-A079	EYS	SNP	Missense_Mutation	6	66094305	A	C	6	56
BRCA	TCGA-A8-A079	HECW1	SNP	Nonsense_Mutation	7	43484512	G	T	41	83
BRCA	TCGA-A8-A079	KCNQ3	SNP	Missense_Mutation	8	133141963	C	G	31	45
BRCA	TCGA-A8-A079	TLN1	SNP	Silent	9	35717228	C	A	22	38
BRCA	TCGA-A8-A079	KANK1	SNP	Silent	9	712824	C	G	23	25
BRCA	TCGA-A8-A07B	MOV10	SNP	Silent	1	113240703	C	T	28	55
BRCA	TCGA-A8-A07B	THBS3	SNP	Missense_Mutation	1	155171777	C	G	29	77
BRCA	TCGA-A8-A07B	ZNF281	SNP	Missense_Mutation	1	200376828	G	C	41	86
BRCA	TCGA-A8-A07B	SCCPDH	SNP	Missense_Mutation	1	246930542	G	T	45	72
BRCA	TCGA-A8-A07B	OR2T34	SNP	Silent	1	248737930	G	A	43	52
BRCA	TCGA-A8-A07B	THRAP3	SNP	Missense_Mutation	1	36766611	G	A	45	77
BRCA	TCGA-A8-A07B	ZSWIM5	SNP	Silent	1	45516765	C	T	32	68
BRCA	TCGA-A8-A07B	CYP4B1	SNP	Splice_site	1	47279985	C	T	23	52
BRCA	TCGA-A8-A07B	SIAE	SNP	Missense_Mutation	11	124518025	G	C	33	71
BRCA	TCGA-A8-A07B	TRIM44	SNP	Missense_Mutation	11	35684969	G	C	33	54
BRCA	TCGA-A8-A07B	TRIM44	SNP	Nonsense_Mutation	11	35684999	G	T	33	63
BRCA	TCGA-A8-A07B	CTTN	SNP	Missense_Mutation	11	70256029	G	C	41	99
BRCA	TCGA-A8-A07B	GNPTAB	DEL	Frame_Shift_Del	12	102164928	A	-	5	90
BRCA	TCGA-A8-A07B	STAB2	SNP	Silent	12	104106175	A	G	8	40
BRCA	TCGA-A8-A07B	WSCD2	SNP	Missense_Mutation	12	108634315	G	A	43	93
BRCA	TCGA-A8-A07B	TBX5	SNP	Missense_Mutation	12	114793477	G	C	45	74
BRCA	TCGA-A8-A07B	SLC38A4	SNP	Missense_Mutation	12	47173756	A	G	9	93
BRCA	TCGA-A8-A07B	KRT2	SNP	Silent	12	53040550	G	T	46	55
BRCA	TCGA-A8-A07B	DUSP6	SNP	Silent	12	89743172	G	A	36	80
BRCA	TCGA-A8-A07B	STARD13	SNP	Nonsense_Mutation	13	33859766	G	A	45	82
BRCA	TCGA-A8-A07B	DYNC1H1	SNP	Missense_Mutation	14	102481649	G	A	42	64
BRCA	TCGA-A8-A07B	C14orf182	SNP	Missense_Mutation	14	50472342	C	T	20	56
BRCA	TCGA-A8-A07B	KTN1	SNP	Missense_Mutation	14	56130713	C	T	25	97
BRCA	TCGA-A8-A07B		SNP	Silent	15	102292700	C	G	30	81
BRCA	TCGA-A8-A07B	TUBGCP4	SNP	Missense_Mutation	15	43687823	C	A	29	100
BRCA	TCGA-A8-A07B	ZNF592	SNP	Missense_Mutation	15	85327107	C	T	30	68
BRCA	TCGA-A8-A07B	PRSS22	SNP	Silent	16	2906139	G	A	38	42
BRCA	TCGA-A8-A07B	NFAT5	INS	Frame_Shift_Ins	16	69726520	-	A	29	90
BRCA	TCGA-A8-A07B	ACACA	SNP	Silent	17	35454000	A	G	7	29
BRCA	TCGA-A8-A07B	MPP3	SNP	Missense_Mutation	17	41888280	G	T	41	60
BRCA	TCGA-A8-A07B	KANSL1	DEL	Frame_Shift_Del	17	44117113	G	-	37	78
BRCA	TCGA-A8-A07B	SMG8	SNP	Missense_Mutation	17	57288244	G	C	33	75
BRCA	TCGA-A8-A07B	TP53	DEL	Frame_Shift_Del	17	7578409	CTCACAACCTCCGTCATGTGCTGTGACTG	-	24	55
BRCA	TCGA-A8-A07B	WDR7	SNP	Missense_Mutation	18	54483316	G	C	43	87
BRCA	TCGA-A8-A07B	HOOK2	DEL	Frame_Shift_Del	19	12874242	T	-	51	53
BRCA	TCGA-A8-A07B	ZNF431	SNP	Missense_Mutation	19	21366706	C	T	29	80
BRCA	TCGA-A8-A07B	RYR1	SNP	Silent	19	39025994	C	T	28	52
BRCA	TCGA-A8-A07B	MBOAT7	SNP	Missense_Mutation	19	54678109	G	C	34	60
BRCA	TCGA-A8-A07B	SLC25A23	SNP	Silent	19	6452443	C	T	26	45
BRCA	TCGA-A8-A07B	CCDC138	SNP	Missense_Mutation	2	109489964	C	G	32	83
BRCA	TCGA-A8-A07B	GLI2	SNP	Missense_Mutation	2	121726426	C	G	29	59
BRCA	TCGA-A8-A07B	CERS6	SNP	Missense_Mutation	2	169312982	C	G	32	59
BRCA	TCGA-A8-A07B	ALS2	SNP	Missense_Mutation	2	202606414	G	C	33	80
BRCA	TCGA-A8-A07B	FANCL	SNP	Missense_Mutation	2	58456952	T	A	60	47
BRCA	TCGA-A8-A07B	ACSS1	SNP	Silent	20	24988539	G	A	45	60
BRCA	TCGA-A8-A07B	C20orf96	SNP	Silent	20	259038	C	T	32	51
BRCA	TCGA-A8-A07B	WFDC2	SNP	Missense_Mutation	20	44108611	A	G	8	33
BRCA	TCGA-A8-A07B	MCM3AP	SNP	Silent	21	47692480	G	A	41	52
BRCA	TCGA-A8-A07B	TFIP11	SNP	Missense_Mutation	22	26890837	C	T	29	99
BRCA	TCGA-A8-A07B	ARMCX1	SNP	Missense_Mutation	23	100809228	G	A	45	64
BRCA	TCGA-A8-A07B	MSL3	SNP	Silent	23	11783719	C	T	32	65
BRCA	TCGA-A8-A07B	PLXNA3	SNP	Missense_Mutation	23	153692754	G	A	38	52
BRCA	TCGA-A8-A07B	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A07B	LEPREL1	SNP	Missense_Mutation	3	189705453	C	T	29	60
BRCA	TCGA-A8-A07B	MUC4	SNP	Missense_Mutation	3	195492266	C	T	19	66
BRCA	TCGA-A8-A07B	EPHA3	SNP	Missense_Mutation	3	89448571	G	A	37	87
BRCA	TCGA-A8-A07B	CCNA2	SNP	Missense_Mutation	4	122740585	A	G	3	94
BRCA	TCGA-A8-A07B	OTOP1	SNP	Silent	4	4199564	G	A	35	49
BRCA	TCGA-A8-A07B	NOA1	SNP	Silent	4	57842681	C	G	27	49
BRCA	TCGA-A8-A07B	PRR3	SNP	Missense_Mutation	6	30529872	C	T	23	57
BRCA	TCGA-A8-A07B	CUL9	SNP	Silent	6	43155717	C	T	23	49
BRCA	TCGA-A8-A07B	GIGYF1	SNP	Missense_Mutation	7	100280053	C	T	32	95
BRCA	TCGA-A8-A07B	SLC13A1	SNP	Missense_Mutation	7	122757567	A	T	8	53
BRCA	TCGA-A8-A07B	TRIM24	SNP	Nonsense_Mutation	7	138203954	C	T	21	97
BRCA	TCGA-A8-A07B	CLK2P	SNP	Missense_Mutation	7	23624895	C	T	27	51
BRCA	TCGA-A8-A07B	ZHX1	SNP	Missense_Mutation	8	124266785	G	A	37	83
BRCA	TCGA-A8-A07B	PREX2	SNP	Missense_Mutation	8	69028146	T	C	50	91
BRCA	TCGA-A8-A07B	STK3	SNP	Silent	8	99591915	A	G	4	50
BRCA	TCGA-A8-A07B	CAMSAP1	SNP	Silent	9	138714836	C	A	23	40
BRCA	TCGA-A8-A07B	IL11RA	SNP	Nonsense_Mutation	9	34655616	C	T	25	75
BRCA	TCGA-A8-A07B	VCP	SNP	Missense_Mutation	9	35067979	C	T	19	100
BRCA	TCGA-A8-A07B		SNP	Missense_Mutation	9	78938171	A	G	2	83
BRCA	TCGA-A8-A07C	CASZ1	SNP	Missense_Mutation	1	10707928	G	A	42	78
BRCA	TCGA-A8-A07C	TAS1R3	SNP	Nonsense_Mutation	1	1268387	C	G	19	37
BRCA	TCGA-A8-A07C	TARS2	SNP	Missense_Mutation	1	150469292	G	A	41	86
BRCA	TCGA-A8-A07C	LCE2D	SNP	Missense_Mutation	1	152636666	C	T	30	53
BRCA	TCGA-A8-A07C	TRIM46	SNP	Missense_Mutation	1	155156289	G	A	39	90
BRCA	TCGA-A8-A07C	THBS3	SNP	Silent	1	155176016	G	C	35	61
BRCA	TCGA-A8-A07C	FMO1	SNP	Silent	1	171251162	C	T	25	47
BRCA	TCGA-A8-A07C	ASTN1	SNP	Missense_Mutation	1	176992609	G	T	44	99
BRCA	TCGA-A8-A07C	ITPKB	SNP	Nonsense_Mutation	1	226825421	G	A	37	72
BRCA	TCGA-A8-A07C	EPHB2	SNP	Silent	1	23191470	C	T	31	47
BRCA	TCGA-A8-A07C	IL28RA	SNP	Silent	1	24496055	C	T	20	41
BRCA	TCGA-A8-A07C	COL16A1	INS	In_Frame_Ins	1	32157643	-	CGT	30	52
BRCA	TCGA-A8-A07C	SYNC	SNP	Missense_Mutation	1	33160900	C	G	19	70
BRCA	TCGA-A8-A07C	ZBTB48	SNP	Missense_Mutation	1	6642356	A	G	2	88
BRCA	TCGA-A8-A07C	HERC4	SNP	Nonsense_Mutation	10	69832857	G	T	34	62
BRCA	TCGA-A8-A07C	FAM149B1	SNP	Missense_Mutation	10	74953317	G	A	45	74
BRCA	TCGA-A8-A07C	PPP3CB	SNP	Missense_Mutation	10	75230840	G	A	33	100
BRCA	TCGA-A8-A07C	IFIT1B	SNP	Nonsense_Mutation	10	91143779	G	T	33	59
BRCA	TCGA-A8-A07C	MUC5B	DEL	In_Frame_Del	11	1263459	CTGTCA	-	28	68
BRCA	TCGA-A8-A07C	HPS5	SNP	Missense_Mutation	11	18313238	T	C	56	50
BRCA	TCGA-A8-A07C	RIC8A	SNP	Missense_Mutation	11	209698	G	T	44	64
BRCA	TCGA-A8-A07C	CKAP5	SNP	Missense_Mutation	11	46811734	T	C	53	48
BRCA	TCGA-A8-A07C	OR5M10	SNP	Silent	11	56344871	G	T	45	50
BRCA	TCGA-A8-A07C	OR4D10	SNP	Missense_Mutation	11	59245434	T	C	53	66
BRCA	TCGA-A8-A07C	CCS	SNP	Missense_Mutation	11	66367007	C	G	22	69
BRCA	TCGA-A8-A07C	RBM4B	SNP	Missense_Mutation	11	66444335	A	T	16	56
BRCA	TCGA-A8-A07C	ENSG00000223709	SNP	Missense_Mutation	11	89791245	G	A	40	34
BRCA	TCGA-A8-A07C	FAT3	SNP	Missense_Mutation	11	92592379	T	A	56	89
BRCA	TCGA-A8-A07C	OAS1	SNP	Missense_Mutation	12	113346375	G	C	42	53
BRCA	TCGA-A8-A07C	TULP3	SNP	Splice_Site	12	3018748	T	A	59	69
BRCA	TCGA-A8-A07C	COL2A1	DEL	Frame_Shift_Del	12	48368057	GGAAG	-	35	76
BRCA	TCGA-A8-A07C	MAP3K12	DEL	In_Frame_Del	12	53876961	GAG	-	45	61
BRCA	TCGA-A8-A07C	ZBTB39	SNP	Missense_Mutation	12	57398550	G	A	46	98
BRCA	TCGA-A8-A07C	LPCAT3	SNP	Missense_Mutation	12	7087665	C	T	30	99
BRCA	TCGA-A8-A07C	LGR5	SNP	Silent	12	71978445	G	C	46	48
BRCA	TCGA-A8-A07C	PZP	SNP	Silent	12	9321484	T	A	53	47
BRCA	TCGA-A8-A07C	ANKS1B	SNP	Missense_Mutation	12	99192725	C	G	17	98
BRCA	TCGA-A8-A07C	SPG20	SNP	Missense_Mutation	13	36886599	G	C	36	76
BRCA	TCGA-A8-A07C	EDNRB	SNP	Silent	13	78492256	G	A	37	58
BRCA	TCGA-A8-A07C	FRMD6	SNP	Missense_Mutation	14	52171538	G	T	37	77
BRCA	TCGA-A8-A07C	ESR2	SNP	Silent	14	64746760	T	G	50	49
BRCA	TCGA-A8-A07C	DISP2	SNP	Missense_Mutation	15	40661498	C	T	26	99
BRCA	TCGA-A8-A07C	MYO5C	SNP	Nonsense_Mutation	15	52553129	C	A	30	65
BRCA	TCGA-A8-A07C	LOC100288997	SNP	Missense_Mutation	15	91493657	T	G	56	47
BRCA	TCGA-A8-A07C	SLC5A11	SNP	Missense_Mutation	16	24919344	C	A	26	61
BRCA	TCGA-A8-A07C	PSKH1	SNP	Missense_Mutation	16	67942933	T	A	60	91
BRCA	TCGA-A8-A07C	HDAC5	SNP	Missense_Mutation	17	42170479	G	A	43	71
BRCA	TCGA-A8-A07C	FMNL1	SNP	Silent	17	43314958	G	A	46	53
BRCA	TCGA-A8-A07C	HOXB2	SNP	Missense_Mutation	17	46622173	G	A	36	82
BRCA	TCGA-A8-A07C	ENO3	SNP	Missense_Mutation	17	4856110	C	G	26	93
BRCA	TCGA-A8-A07C	MSI2	SNP	Missense_Mutation	17	55674274	T	C	58	90
BRCA	TCGA-A8-A07C	DNAH2	SNP	Missense_Mutation	17	7663178	A	T	6	63
BRCA	TCGA-A8-A07C	SPDYE4	SNP	Missense_Mutation	17	8660710	C	G	20	50
BRCA	TCGA-A8-A07C	CEP76	SNP	Missense_Mutation	18	12678227	G	A	41	86
BRCA	TCGA-A8-A07C	ANKRD30B	SNP	Missense_Mutation	18	14782608	T	C	57	50
BRCA	TCGA-A8-A07C	ZNF69	SNP	Missense_Mutation	19	12015904	G	A	48	41
BRCA	TCGA-A8-A07C	ARRDC2	SNP	Silent	19	18120412	G	C	39	25
BRCA	TCGA-A8-A07C	GPATCH1	SNP	Silent	19	33585132	A	G	11	59
BRCA	TCGA-A8-A07C	HKR1	SNP	Nonsense_Mutation	19	37853955	C	T	25	71
BRCA	TCGA-A8-A07C	CADM4	SNP	Missense_Mutation	19	44130299	G	A	40	71
BRCA	TCGA-A8-A07C	ZNF283	SNP	Missense_Mutation	19	44351903	T	A	64	82
BRCA	TCGA-A8-A07C	ZNF233	SNP	Missense_Mutation	19	44777622	G	A	42	21
BRCA	TCGA-A8-A07C	HDGFRP2	SNP	Missense_Mutation	19	4496327	C	A	30	47
BRCA	TCGA-A8-A07C	ZC3H4	DEL	In_Frame_Del	19	47615759	GAAGGCGTT	-	37	67
BRCA	TCGA-A8-A07C	RPL18	SNP	Missense_Mutation	19	49119404	C	A	26	91
BRCA	TCGA-A8-A07C	CRB3	SNP	Missense_Mutation	19	6465589	T	C	60	43
BRCA	TCGA-A8-A07C	MCOLN1	SNP	Silent	19	7593049	G	A	40	30
BRCA	TCGA-A8-A07C	DARS	SNP	Missense_Mutation	2	136678156	C	A	32	100
BRCA	TCGA-A8-A07C	SCN1A	SNP	Missense_Mutation	2	166850747	C	G	20	52
BRCA	TCGA-A8-A07C	TTN	SNP	Missense_Mutation	2	179463526	C	T	19	75
BRCA	TCGA-A8-A07C	ASNSD1	SNP	Missense_Mutation	2	190531576	C	T	18	100
BRCA	TCGA-A8-A07C	ERBB4	SNP	Missense_Mutation	2	212989493	T	A	58	92
BRCA	TCGA-A8-A07C	TNP1	SNP	Missense_Mutation	2	217724400	G	C	41	76
BRCA	TCGA-A8-A07C	STK11IP	SNP	Missense_Mutation	2	220479214	G	T	33	57
BRCA	TCGA-A8-A07C	GAL3ST2	SNP	Missense_Mutation	2	242742878	C	G	23	47
BRCA	TCGA-A8-A07C	DHX57	SNP	Missense_Mutation	2	39046255	T	A	60	77
BRCA	TCGA-A8-A07C	VPS54	SNP	Missense_Mutation	2	64148377	T	C	51	87
BRCA	TCGA-A8-A07C	DNAH6	SNP	Missense_Mutation	2	84897461	G	T	46	66
BRCA	TCGA-A8-A07C	RETSAT	SNP	Nonsense_Mutation	2	85570864	G	A	39	62
BRCA	TCGA-A8-A07C	ZNF514	SNP	Silent	2	95815408	A	T	11	50
BRCA	TCGA-A8-A07C	ANKRD36C	SNP	Missense_Mutation	2	96546190	G	C	48	59
BRCA	TCGA-A8-A07C	PREX1	SNP	Missense_Mutation	20	47251259	T	A	63	76
BRCA	TCGA-A8-A07C	HUNK	SNP	Missense_Mutation	21	33355870	A	G	3	66
BRCA	TCGA-A8-A07C	ETS2	SNP	Missense_Mutation	21	40186899	A	T	12	59
BRCA	TCGA-A8-A07C	MX2	SNP	Missense_Mutation	21	42748967	T	G	64	20
BRCA	TCGA-A8-A07C	COL18A1	SNP	Nonsense_Mutation	21	46888327	C	A	29	95
BRCA	TCGA-A8-A07C	MCM3AP	SNP	Silent	21	47663506	G	A	46	61
BRCA	TCGA-A8-A07C	MYO18B	SNP	Missense_Mutation	22	26422632	G	A	39	40
BRCA	TCGA-A8-A07C	XPNPEP3	SNP	Missense_Mutation	22	41282335	G	C	47	94
BRCA	TCGA-A8-A07C	PNPLA3	SNP	Missense_Mutation	22	44328855	C	T	24	98
BRCA	TCGA-A8-A07C	LOC286528	SNP	Missense_Mutation	23	113625316	A	G	4	79
BRCA	TCGA-A8-A07C	ODZ1	SNP	Nonsense_Mutation	23	123695609	C	T	26	99
BRCA	TCGA-A8-A07C	FRMD7	SNP	Missense_Mutation	23	131212279	C	A	24	87
BRCA	TCGA-A8-A07C	SAGE1	SNP	Missense_Mutation	23	134995008	A	G	15	53
BRCA	TCGA-A8-A07C	EIF1AX	SNP	Missense_Mutation	23	20148683	T	G	50	84
BRCA	TCGA-A8-A07C	POLA1	SNP	Missense_Mutation	23	24745162	C	A	24	94
BRCA	TCGA-A8-A07C	PAGE1	SNP	Missense_Mutation	23	49459343	G	A	38	50
BRCA	TCGA-A8-A07C	AKAP4	SNP	Missense_Mutation	23	49957662	C	T	32	62
BRCA	TCGA-A8-A07C	NHSL2	SNP	Missense_Mutation	23	71358701	C	A	30	53
BRCA	TCGA-A8-A07C	NAP1L2	SNP	Missense_Mutation	23	72434297	G	A	45	54
BRCA	TCGA-A8-A07C	TM4SF1	SNP	Missense_Mutation	3	149095318	C	A	17	85
BRCA	TCGA-A8-A07C	MED12L	SNP	Silent	3	151107820	C	G	24	55
BRCA	TCGA-A8-A07C	IGSF10	SNP	Missense_Mutation	3	151165107	G	C	45	63
BRCA	TCGA-A8-A07C	MECOM	SNP	Silent	3	168833701	C	T	23	52
BRCA	TCGA-A8-A07C	ACTRT3	SNP	Missense_Mutation	3	169485849	T	A	51	58
BRCA	TCGA-A8-A07C	VILL	SNP	Missense_Mutation	3	38035842	G	A	46	71
BRCA	TCGA-A8-A07C	FYCO1	SNP	Missense_Mutation	3	46021263	G	T	33	76
BRCA	TCGA-A8-A07C	NBEAL2	SNP	Missense_Mutation	3	47033996	G	C	43	71
BRCA	TCGA-A8-A07C	SCAP	SNP	Missense_Mutation	3	47463968	G	A	41	55
BRCA	TCGA-A8-A07C	PCBP4	SNP	Splice_Site	3	51993381	A	T	6	62
BRCA	TCGA-A8-A07C	DNAH1	SNP	Missense_Mutation	3	52382948	G	C	36	60
BRCA	TCGA-A8-A07C	ELOVL6	SNP	Missense_Mutation	4	110972768	G	T	42	89
BRCA	TCGA-A8-A07C	WDR17	SNP	Missense_Mutation	4	177071740	G	C	33	55
BRCA	TCGA-A8-A07C	WHSC1	SNP	Missense_Mutation	4	1953848	C	G	23	77
BRCA	TCGA-A8-A07C	ZNF732	SNP	Missense_Mutation	4	266210	G	T	48	54
BRCA	TCGA-A8-A07C	RUFY3	INS	Splice_site	4	71654523	-	A	41	100
BRCA	TCGA-A8-A07C	MCC	SNP	Missense_Mutation	5	112458465	T	A	63	83
BRCA	TCGA-A8-A07C	FNIP1	SNP	Missense_Mutation	5	130778206	C	A	32	62
BRCA	TCGA-A8-A07C	FSTL4	SNP	Missense_Mutation	5	132535227	C	T	31	92
BRCA	TCGA-A8-A07C	FAM71B	SNP	Missense_Mutation	5	156590407	C	G	20	59
BRCA	TCGA-A8-A07C	SH3PXD2B	SNP	Missense_Mutation	5	171765983	G	A	42	57
BRCA	TCGA-A8-A07C	ZFR	SNP	Missense_Mutation	5	32355898	T	C	62	89
BRCA	TCGA-A8-A07C	FST	SNP	Missense_Mutation	5	52779526	A	G	9	93
BRCA	TCGA-A8-A07C	IQGAP2	SNP	Silent	5	75993880	G	C	45	71
BRCA	TCGA-A8-A07C	BRD9	SNP	Silent	5	870649	C	T	20	46
BRCA	TCGA-A8-A07C	PRDM1	SNP	Silent	6	106553637	C	A	24	78
BRCA	TCGA-A8-A07C	ENPP5	SNP	Missense_Mutation	6	46129132	T	G	61	66
BRCA	TCGA-A8-A07C	DST	SNP	Missense_Mutation	6	56458895	G	T	41	68
BRCA	TCGA-A8-A07C	ACHE	SNP	Missense_Mutation	7	100487763	C	T	22	75
BRCA	TCGA-A8-A07C	FLNC	SNP	Missense_Mutation	7	128491632	G	A	38	74
BRCA	TCGA-A8-A07C	FAM115A	SNP	Silent	7	143573579	C	A	29	54
BRCA	TCGA-A8-A07C	GIMAP7	SNP	Missense_Mutation	7	150217141	A	G	6	63
BRCA	TCGA-A8-A07C	AEBP1	SNP	Missense_Mutation	7	44152266	C	G	26	66
BRCA	TCGA-A8-A07C	AKAP9	SNP	Missense_Mutation	7	91709195	G	C	33	61
BRCA	TCGA-A8-A07C	PKHD1L1	SNP	Missense_Mutation	8	110457322	T	C	62	55
BRCA	TCGA-A8-A07C	FAM49B	SNP	Missense_Mutation	8	130861491	C	G	29	99
BRCA	TCGA-A8-A07C	TRAPPC9	SNP	Missense_Mutation	8	141285887	A	C	8	49
BRCA	TCGA-A8-A07C	PARP10	DEL	Frame_Shift_Del	8	145058963	TTTCCACCAGGCCC	-	52	43
BRCA	TCGA-A8-A07C	PREX2	SNP	Missense_Mutation	8	68982088	C	T	31	82
BRCA	TCGA-A8-A07C	ZFHX4	SNP	Missense_Mutation	8	77617392	G	T	37	98
BRCA	TCGA-A8-A07C	FABP4	DEL	In_Frame_Del	8	82395335	TCTTTCATATAA	-	62	73
BRCA	TCGA-A8-A07C	COL15A1	SNP	Missense_Mutation	9	101796852	T	G	54	56
BRCA	TCGA-A8-A07C	CEL	SNP	Missense_Mutation	9	135946377	C	A	18	66
BRCA	TCGA-A8-A07C	BNC2	SNP	Nonsense_Mutation	9	16738360	C	A	29	58
BRCA	TCGA-A8-A07E	PRAMEF4	SNP	Missense_Mutation	1	12941807	C	T	27	33
BRCA	TCGA-A8-A07E	PQLC2	SNP	Missense_Mutation	1	19655106	C	T	26	58
BRCA	TCGA-A8-A07E	CTSE	SNP	Missense_Mutation	1	206319212	G	A	34	81
BRCA	TCGA-A8-A07E	LAMB3	SNP	Missense_Mutation	1	209790889	T	A	51	54
BRCA	TCGA-A8-A07E	NEK2	SNP	Missense_Mutation	1	211848787	T	C	57	59
BRCA	TCGA-A8-A07E	FMN2	DEL	Frame_Shift_Del	1	240255574	C	-	27	54
BRCA	TCGA-A8-A07E	TXNDC12	SNP	Missense_Mutation	1	52494264	C	T	17	87
BRCA	TCGA-A8-A07E	CACNB2	SNP	Missense_Mutation	10	18787302	G	A	46	100
BRCA	TCGA-A8-A07E	ATM	SNP	Missense_Mutation	11	108192065	G	A	45	96
BRCA	TCGA-A8-A07E	FEZ1	SNP	Missense_Mutation	11	125325768	C	T	28	62
BRCA	TCGA-A8-A07E	MED13L	SNP	Missense_Mutation	12	116450669	G	A	42	51
BRCA	TCGA-A8-A07E	CDKN1B	SNP	Nonsense_Mutation	12	12870853	C	A	31	92
BRCA	TCGA-A8-A07E	DYNC1H1	SNP	Nonsense_Mutation	14	102467878	G	T	33	88
BRCA	TCGA-A8-A07E	LRRC16B	SNP	Missense_Mutation	14	24524512	G	A	41	89
BRCA	TCGA-A8-A07E	SIX4	SNP	Missense_Mutation	14	61186564	T	C	52	63
BRCA	TCGA-A8-A07E	CEP128	SNP	Missense_Mutation	14	81297497	G	A	45	51
BRCA	TCGA-A8-A07E	MAP1A	SNP	Missense_Mutation	15	43813948	G	A	33	99
BRCA	TCGA-A8-A07E	MAP1A	SNP	Missense_Mutation	15	43814110	G	C	45	99
BRCA	TCGA-A8-A07E	MAP1A	SNP	Silent	15	43814496	G	A	33	60
BRCA	TCGA-A8-A07E	MAP1A	SNP	Missense_Mutation	15	43814971	G	A	45	71
BRCA	TCGA-A8-A07E	MAP1A	SNP	Silent	15	43817718	G	A	45	60
BRCA	TCGA-A8-A07E	MAP1A	SNP	Missense_Mutation	15	43818874	G	A	33	63
BRCA	TCGA-A8-A07E	FAM227B	SNP	Missense_Mutation	15	49620836	A	T	12	53
BRCA	TCGA-A8-A07E	EDC4	SNP	Missense_Mutation	16	67911254	G	A	41	100
BRCA	TCGA-A8-A07E	KIF2B	SNP	Missense_Mutation	17	51901164	G	A	38	78
BRCA	TCGA-A8-A07E	MYO9B	SNP	Missense_Mutation	19	17212961	A	G	7	63
BRCA	TCGA-A8-A07E	PSG1	SNP	Missense_Mutation	19	43375943	C	T	29	51
BRCA	TCGA-A8-A07E	ZNF534	SNP	Missense_Mutation	19	52942200	G	A	48	67
BRCA	TCGA-A8-A07E	TMC4	SNP	Missense_Mutation	19	54665951	C	T	31	65
BRCA	TCGA-A8-A07E	LILRA3	SNP	Missense_Mutation	19	54803069	C	T	27	36
BRCA	TCGA-A8-A07E	GP6	SNP	Splice_Site	19	55543873	C	T	18	69
BRCA	TCGA-A8-A07E	MYO1F	SNP	Missense_Mutation	19	8615476	C	T	23	92
BRCA	TCGA-A8-A07E	NCK2	SNP	Missense_Mutation	2	106471553	G	T	41	100
BRCA	TCGA-A8-A07E	TTN	SNP	Missense_Mutation	2	179456109	C	T	31	100
BRCA	TCGA-A8-A07E	TTC32	SNP	Missense_Mutation	2	20101597	C	T	32	51
BRCA	TCGA-A8-A07E	ABCB6	INS	Frame_Shift_Ins	2	220082498	-	T	6	70
BRCA	TCGA-A8-A07E	FARP2	INS	Frame_Shift_Ins	2	242402858	-	T	37	70
BRCA	TCGA-A8-A07E	SLC4A5	SNP	Missense_Mutation	2	74452069	G	T	40	48
BRCA	TCGA-A8-A07E	LRP5L	SNP	Missense_Mutation	22	25750714	C	A	18	59
BRCA	TCGA-A8-A07E	CACNA1I	SNP	Missense_Mutation	22	40069992	C	T	17	96
BRCA	TCGA-A8-A07E	RBMXL3	SNP	Silent	23	114425006	C	T	25	59
BRCA	TCGA-A8-A07E	ARHGAP36	SNP	Silent	23	130219991	G	T	47	63
BRCA	TCGA-A8-A07E	PHF6	SNP	Missense_Mutation	23	133527637	G	A	37	72
BRCA	TCGA-A8-A07E	CHM	SNP	Missense_Mutation	23	85128090	A	T	4	55
BRCA	TCGA-A8-A07E	IFT122	SNP	Nonsense_Mutation	3	129180117	C	T	29	95
BRCA	TCGA-A8-A07E	TOPBP1	SNP	Silent	3	133327397	A	G	5	49
BRCA	TCGA-A8-A07E	ANKRD28	DEL	Frame_Shift_Del	3	15751224	GG	-	35	89
BRCA	TCGA-A8-A07E	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-A8-A07E	CCR5	DEL	In_Frame_Del	3	46415073	AGA	-	11	58
BRCA	TCGA-A8-A07E	OTUD4	SNP	Missense_Mutation	4	146076763	A	G	15	83
BRCA	TCGA-A8-A07E	LOC441016	SNP	Missense_Mutation	4	54442456	C	T	22	52
BRCA	TCGA-A8-A07E	CYFIP2	SNP	Missense_Mutation	5	156747679	C	G	31	87
BRCA	TCGA-A8-A07E	ARG1	SNP	Missense_Mutation	6	131897807	G	A	37	76
BRCA	TCGA-A8-A07E	VWA7	SNP	Silent	6	31741189	A	G	5	51
BRCA	TCGA-A8-A07E	MDN1	SNP	Missense_Mutation	6	90418279	C	G	30	68
BRCA	TCGA-A8-A07E	MLL3	SNP	Missense_Mutation	7	151960160	G	A	45	98
BRCA	TCGA-A8-A07E	RHBDD2	SNP	Missense_Mutation	7	75513141	G	A	37	83
BRCA	TCGA-A8-A07E	SPDYE3	SNP	Missense_Mutation	7	99912241	G	A	33	54
BRCA	TCGA-A8-A07E	TMEM64	DEL	In_Frame_Del	8	91657590	TGAGCACGA	-	63	74
BRCA	TCGA-A8-A07E	GLE1	DEL	In_Frame_Del	9	131296055	GAA	-	41	100
BRCA	TCGA-A8-A07E	GLE1	DEL	Frame_Shift_Del	9	131296060	GGCC	-	47	63
BRCA	TCGA-A8-A07E	TLN1	DEL	Frame_Shift_Del	9	35706019	T	-	55	46
BRCA	TCGA-A8-A07F	FMO5	SNP	Missense_Mutation	1	146684013	A	T	4	90
BRCA	TCGA-A8-A07F	ITPKB	SNP	Missense_Mutation	1	226923335	A	G	11	86
BRCA	TCGA-A8-A07F	RYR2	SNP	Silent	1	237947633	G	A	39	31
BRCA	TCGA-A8-A07F	OR14C36	SNP	Silent	1	248512787	C	T	21	46
BRCA	TCGA-A8-A07F	KIAA1462	SNP	Missense_Mutation	10	30336579	C	T	27	58
BRCA	TCGA-A8-A07F	PIK3AP1	SNP	Silent	10	98469721	G	A	48	58
BRCA	TCGA-A8-A07F	OR51E1	SNP	Missense_Mutation	11	4674666	C	T	27	59
BRCA	TCGA-A8-A07F	P2RY6	SNP	Missense_Mutation	11	73008182	G	T	46	73
BRCA	TCGA-A8-A07F	AHNAK2	SNP	Missense_Mutation	14	105419083	G	A	39	55
BRCA	TCGA-A8-A07F	PTGER2	SNP	Missense_Mutation	14	52781936	C	T	23	79
BRCA	TCGA-A8-A07F	ZFP36L1	SNP	Missense_Mutation	14	69256761	T	G	57	76
BRCA	TCGA-A8-A07F	OTOA	SNP	Silent	16	21728239	G	A	39	46
BRCA	TCGA-A8-A07F	CDH1	DEL	Frame_Shift_Del	16	68857331	ATGGCCT	-	12	77
BRCA	TCGA-A8-A07F	SGSM2	SNP	Missense_Mutation	17	2264988	G	T	38	74
BRCA	TCGA-A8-A07F	CD300E	SNP	Missense_Mutation	17	72613482	C	T	31	53
BRCA	TCGA-A8-A07F	DNAH17	SNP	Silent	17	76567042	G	A	39	20
BRCA	TCGA-A8-A07F	BAZ2B	SNP	Missense_Mutation	2	160182317	G	C	33	95
BRCA	TCGA-A8-A07F	PLB1	SNP	Splice_Site	2	28827627	G	T	44	79
BRCA	TCGA-A8-A07F	PRND	SNP	Missense_Mutation	20	4705388	G	A	38	52
BRCA	TCGA-A8-A07F	HTR2C	SNP	Missense_Mutation	23	114082686	G	A	40	69
BRCA	TCGA-A8-A07F	DNAJC19	SNP	Silent	3	180702454	A	G	1	59
BRCA	TCGA-A8-A07F	SLC26A6	SNP	Missense_Mutation	3	48664481	C	G	28	56
BRCA	TCGA-A8-A07F	WDR17	SNP	Missense_Mutation	4	177071638	A	G	4	89
BRCA	TCGA-A8-A07F	GPRIN3	SNP	Silent	4	90170956	C	A	25	44
BRCA	TCGA-A8-A07F	PCDHA6	SNP	Missense_Mutation	5	140209877	C	T	27	56
BRCA	TCGA-A8-A07F	MAP3K1	DEL	Frame_Shift_Del	5	56178146	A	-	12	71
BRCA	TCGA-A8-A07F	MAP3K1	DEL	Frame_Shift_Del	5	56178150	ACTT	-	2	56
BRCA	TCGA-A8-A07F	LRP11	SNP	Silent	6	150174187	G	A	41	61
BRCA	TCGA-A8-A07F	WTAP	SNP	Nonsense_Mutation	6	160163165	C	A	17	73
BRCA	TCGA-A8-A07F	HIST1H2AM	SNP	Nonsense_Mutation	6	27860570	T	A	62	87
BRCA	TCGA-A8-A07F	TUBB2A	SNP	Missense_Mutation	6	3154882	C	T	27	99
BRCA	TCGA-A8-A07F	BAI3	SNP	Silent	6	70071317	G	A	45	52
BRCA	TCGA-A8-A07F	ADCY1	SNP	Missense_Mutation	7	45632382	G	A	40	56
BRCA	TCGA-A8-A07F	POM121L12	SNP	Missense_Mutation	7	53104223	G	T	44	62
BRCA	TCGA-A8-A07F	MRPL15	SNP	Missense_Mutation	8	55049108	G	A	48	100
BRCA	TCGA-A8-A07G	RPTN	SNP	Missense_Mutation	1	152128071	G	A	42	40
BRCA	TCGA-A8-A07G	PLA2G4A	SNP	Missense_Mutation	1	186925327	C	G	28	74
BRCA	TCGA-A8-A07G	AKR7A3	SNP	Missense_Mutation	1	19612756	G	C	35	73
BRCA	TCGA-A8-A07G	KIAA1383	SNP	Nonsense_Mutation	1	232940798	G	A	47	49
BRCA	TCGA-A8-A07G	BMS1	SNP	Missense_Mutation	10	43287948	G	A	33	97
BRCA	TCGA-A8-A07G	GRID1	SNP	Missense_Mutation	10	87407077	C	T	31	70
BRCA	TCGA-A8-A07G	DSCAML1	SNP	Silent	11	117375739	C	T	25	44
BRCA	TCGA-A8-A07G	OR56A4	SNP	Missense_Mutation	11	6023911	C	A	17	60
BRCA	TCGA-A8-A07G	ARHGEF17	SNP	Silent	11	73022275	C	T	21	54
BRCA	TCGA-A8-A07G	MTNR1B	SNP	Silent	11	92714860	C	A	22	34
BRCA	TCGA-A8-A07G	WSCD2	SNP	Nonsense_Mutation	12	108604055	C	T	25	79
BRCA	TCGA-A8-A07G	KRT6C	SNP	Missense_Mutation	12	52867484	C	T	28	52
BRCA	TCGA-A8-A07G	OR4L1	SNP	Silent	14	20528300	C	T	24	47
BRCA	TCGA-A8-A07G	CHD8	SNP	Silent	14	21871620	G	A	41	63
BRCA	TCGA-A8-A07G	SPTB	SNP	Silent	14	65253821	G	A	41	50
BRCA	TCGA-A8-A07G	SHC4	SNP	Missense_Mutation	15	49148314	C	A	18	62
BRCA	TCGA-A8-A07G	OAZ2	SNP	Missense_Mutation	15	64995230	G	T	48	73
BRCA	TCGA-A8-A07G	MCTP2	SNP	Missense_Mutation	15	94983504	G	T	44	65
BRCA	TCGA-A8-A07G	NLRC3	SNP	Splice_Site	16	3611702	C	A	18	93
BRCA	TCGA-A8-A07G	TOX3	SNP	Missense_Mutation	16	52473645	G	A	43	98
BRCA	TCGA-A8-A07G	MPP3	SNP	Missense_Mutation	17	41888564	C	G	24	94
BRCA	TCGA-A8-A07G	MAST1	SNP	Missense_Mutation	19	12979955	A	G	10	86
BRCA	TCGA-A8-A07G	THEG	SNP	Missense_Mutation	19	362223	C	G	29	54
BRCA	TCGA-A8-A07G	IL28A	SNP	Missense_Mutation	19	39759482	G	T	35	44
BRCA	TCGA-A8-A07G	LOC100289293	SNP	Missense_Mutation	2	132724061	G	A	40	51
BRCA	TCGA-A8-A07G	TPO	SNP	Missense_Mutation	2	1546242	T	A	54	50
BRCA	TCGA-A8-A07G	RSAD2	SNP	Missense_Mutation	2	7018164	A	C	6	88
BRCA	TCGA-A8-A07G	KCNG1	SNP	Missense_Mutation	20	49621081	C	T	23	99
BRCA	TCGA-A8-A07G	RAB40A	SNP	Nonsense_Mutation	23	102755366	G	A	37	50
BRCA	TCGA-A8-A07G	ZCCHC16	SNP	Nonsense_Mutation	23	111698734	C	T	27	54
BRCA	TCGA-A8-A07G	AWAT1	SNP	Missense_Mutation	23	69459689	G	A	40	51
BRCA	TCGA-A8-A07G	CASR	SNP	Missense_Mutation	3	122003481	G	A	40	63
BRCA	TCGA-A8-A07G	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A07G	RXFP1	DEL	Frame_Shift_Del	4	159559201	A	-	5	88
BRCA	TCGA-A8-A07G	FGFR3	SNP	Missense_Mutation	4	1808375	C	T	18	57
BRCA	TCGA-A8-A07G	FRYL	SNP	Silent	4	48542836	T	C	50	46
BRCA	TCGA-A8-A07G	KIT	SNP	Missense_Mutation	4	55565832	C	T	25	64
BRCA	TCGA-A8-A07G	PCDHGB1	SNP	Missense_Mutation	5	140730761	G	T	48	45
BRCA	TCGA-A8-A07G	CAPSL	SNP	Nonsense_Mutation	5	35921198	G	A	39	73
BRCA	TCGA-A8-A07G	TAB2	INS	Frame_Shift_Ins	6	149699358	-	T	32	59
BRCA	TCGA-A8-A07G	GRM8	SNP	Silent	7	126173066	G	A	35	69
BRCA	TCGA-A8-A07G	HNRNPA2B1	SNP	Nonsense_Mutation	7	26233303	C	A	21	98
BRCA	TCGA-A8-A07G	POM121L12	SNP	Missense_Mutation	7	53103840	G	A	38	40
BRCA	TCGA-A8-A07G	ENG	SNP	Nonsense_Mutation	9	130605384	C	A	30	50
BRCA	TCGA-A8-A07G	DOCK8	SNP	Missense_Mutation	9	289557	G	C	40	79
BRCA	TCGA-A8-A07I	FLG	SNP	Missense_Mutation	1	152283655	C	T	19	40
BRCA	TCGA-A8-A07I	KIRREL	SNP	Silent	1	158047872	C	T	19	47
BRCA	TCGA-A8-A07I	NAV1	SNP	Missense_Mutation	1	201687769	G	T	38	75
BRCA	TCGA-A8-A07I	ADORA1	SNP	Missense_Mutation	1	203098133	A	T	12	91
BRCA	TCGA-A8-A07I	CR1	SNP	Silent	1	207669639	G	A	39	39
BRCA	TCGA-A8-A07I	TP53BP2	SNP	Missense_Mutation	1	223991057	C	G	32	70
BRCA	TCGA-A8-A07I	ARID1A	SNP	Missense_Mutation	1	27106136	C	G	32	81
BRCA	TCGA-A8-A07I	ARHGAP12	SNP	Missense_Mutation	10	32197496	C	G	32	59
BRCA	TCGA-A8-A07I	ASAH2C	SNP	Silent	10	48033003	T	C	56	60
BRCA	TCGA-A8-A07I	QSER1	SNP	Silent	11	32954676	T	C	53	49
BRCA	TCGA-A8-A07I	AHNAK	SNP	Missense_Mutation	11	62284301	G	A	41	83
BRCA	TCGA-A8-A07I	SLC22A9	SNP	Translation_Start_Site	11	63137348	C	T	19	43
BRCA	TCGA-A8-A07I	PRKCDBP	SNP	Missense_Mutation	11	6341507	A	T	7	71
BRCA	TCGA-A8-A07I	TRAFD1	SNP	Missense_Mutation	12	112578753	T	G	58	84
BRCA	TCGA-A8-A07I	UBC	SNP	Silent	12	125397811	C	A	21	39
BRCA	TCGA-A8-A07I	RIMBP2	SNP	Missense_Mutation	12	130935822	G	T	35	69
BRCA	TCGA-A8-A07I	EP400	SNP	Silent	12	132529374	C	T	19	51
BRCA	TCGA-A8-A07I	GUCY2C	SNP	Missense_Mutation	12	14839103	G	C	41	56
BRCA	TCGA-A8-A07I	DDX11	SNP	Silent	12	31242073	T	C	63	34
BRCA	TCGA-A8-A07I	BRCA2	SNP	Missense_Mutation	13	32912555	G	T	41	63
BRCA	TCGA-A8-A07I	SCEL	SNP	Missense_Mutation	13	78182240	A	T	3	59
BRCA	TCGA-A8-A07I	SLC13A2	SNP	Missense_Mutation	17	26818553	G	A	40	62
BRCA	TCGA-A8-A07I	AATF	SNP	Missense_Mutation	17	35348082	C	T	30	88
BRCA	TCGA-A8-A07I	AATF	SNP	Missense_Mutation	17	35348085	C	G	29	45
BRCA	TCGA-A8-A07I	GGA3	SNP	Silent	17	73239562	C	T	32	55
BRCA	TCGA-A8-A07I	RECQL5	SNP	Missense_Mutation	17	73654533	C	T	27	80
BRCA	TCGA-A8-A07I	DCC	SNP	Missense_Mutation	18	50589678	C	T	23	100
BRCA	TCGA-A8-A07I	TNFRSF11A	SNP	Missense_Mutation	18	60017101	G	A	47	67
BRCA	TCGA-A8-A07I	PGLYRP2	SNP	Missense_Mutation	19	15586523	G	A	40	49
BRCA	TCGA-A8-A07I	SIRT2	SNP	Silent	19	39369891	C	T	23	16
BRCA	TCGA-A8-A07I	PNMAL1	SNP	Missense_Mutation	19	46973388	G	A	34	54
BRCA	TCGA-A8-A07I	MUC16	SNP	Missense_Mutation	19	8997511	G	T	45	44
BRCA	TCGA-A8-A07I	ZNF266	SNP	Missense_Mutation	19	9524420	C	T	27	47
BRCA	TCGA-A8-A07I	ZDBF2	SNP	Missense_Mutation	2	207171377	G	T	45	56
BRCA	TCGA-A8-A07I	KIDINS220	SNP	Missense_Mutation	2	8871022	G	A	35	95
BRCA	TCGA-A8-A07I	ARMCX1	DEL	Frame_Shift_Del	23	100808553	CTGGA	-	24	53
BRCA	TCGA-A8-A07I	ARMCX1	DEL	Frame_Shift_Del	23	100808560	GAACAAATGA	-	37	68
BRCA	TCGA-A8-A07I	TRPC5	SNP	Missense_Mutation	23	111078326	C	A	20	71
BRCA	TCGA-A8-A07I	XIAP	SNP	Silent	23	123019797	C	A	28	46
BRCA	TCGA-A8-A07I	KLHL34	SNP	Missense_Mutation	23	21675572	G	T	36	59
BRCA	TCGA-A8-A07I	CXorf36	SNP	Missense_Mutation	23	45013241	A	G	4	83
BRCA	TCGA-A8-A07I	ITIH5L	SNP	Missense_Mutation	23	54780170	T	G	63	54
BRCA	TCGA-A8-A07I	ITIH5L	SNP	Missense_Mutation	23	54780177	C	A	17	70
BRCA	TCGA-A8-A07I	ZIC4	SNP	Missense_Mutation	3	147108790	G	A	37	77
BRCA	TCGA-A8-A07I	ANP32C	SNP	Missense_Mutation	4	165118440	C	T	31	57
BRCA	TCGA-A8-A07I	PCDHB16	SNP	Nonsense_Mutation	5	140562339	C	T	21	57
BRCA	TCGA-A8-A07I	PCDHB16	SNP	Missense_Mutation	5	140564292	G	T	42	52
BRCA	TCGA-A8-A07I	TBC1D22B	SNP	Missense_Mutation	6	37254787	A	G	6	89
BRCA	TCGA-A8-A07I	PIK3CG	SNP	Silent	7	106523500	C	T	19	42
BRCA	TCGA-A8-A07I	AOAH	SNP	Silent	7	36661342	G	A	38	37
BRCA	TCGA-A8-A07I	CDC14C	SNP	Silent	7	48965237	C	T	31	50
BRCA	TCGA-A8-A07I	CDK14	SNP	Silent	7	90377067	T	C	53	57
BRCA	TCGA-A8-A07I	NEFM	SNP	Missense_Mutation	8	24774866	G	A	37	95
BRCA	TCGA-A8-A07I	ALDH1B1	SNP	Missense_Mutation	9	38395914	G	T	44	54
BRCA	TCGA-A8-A07J	CRTC2	SNP	Missense_Mutation	1	153927365	C	T	27	84
BRCA	TCGA-A8-A07J	KIFAP3	SNP	Missense_Mutation	1	170004659	C	T	32	93
BRCA	TCGA-A8-A07J	PAPPA2	SNP	Missense_Mutation	1	176758986	A	G	11	75
BRCA	TCGA-A8-A07J	ARID1A	DEL	Frame_Shift_Del	1	27094455	TA	-	53	91
BRCA	TCGA-A8-A07J	DHX32	DEL	In_Frame_Del	10	127529507	CCA	-	30	62
BRCA	TCGA-A8-A07J	ADAMTS15	SNP	Silent	11	130343335	C	T	27	48
BRCA	TCGA-A8-A07J	SSRP1	SNP	Missense_Mutation	11	57099870	G	T	33	84
BRCA	TCGA-A8-A07J	INTS5	SNP	Missense_Mutation	11	62414499	C	T	22	77
BRCA	TCGA-A8-A07J	ATG2A	SNP	Splice_site	11	64665833	A	G	11	81
BRCA	TCGA-A8-A07J	GNB3	SNP	Missense_Mutation	12	6952645	G	A	40	80
BRCA	TCGA-A8-A07J	FLT3	SNP	Nonsense_Mutation	13	28601358	C	A	29	76
BRCA	TCGA-A8-A07J	FRY	SNP	Silent	13	32783135	C	G	29	57
BRCA	TCGA-A8-A07J	PCDH9	SNP	Missense_Mutation	13	67802470	G	C	42	100
BRCA	TCGA-A8-A07J	ITGA11	SNP	Missense_Mutation	15	68654007	G	T	34	53
BRCA	TCGA-A8-A07J	HEATR3	SNP	Splice_Site	16	50102690	G	T	33	93
BRCA	TCGA-A8-A07J	CCR10	DEL	Frame_Shift_Del	17	40832609	A	-	8	15
BRCA	TCGA-A8-A07J	PRKACA	SNP	Missense_Mutation	19	14211675	C	G	30	94
BRCA	TCGA-A8-A07J	SPTBN4	SNP	Silent	19	41021284	C	T	30	44
BRCA	TCGA-A8-A07J	LTBP4	SNP	Missense_Mutation	19	41133107	G	A	37	81
BRCA	TCGA-A8-A07J	MUC16	SNP	Missense_Mutation	19	8993436	G	T	34	48
BRCA	TCGA-A8-A07J	FARSB	SNP	Missense_Mutation	2	223520777	C	T	19	64
BRCA	TCGA-A8-A07J	FITM2	SNP	Missense_Mutation	20	42935409	G	T	36	57
BRCA	TCGA-A8-A07J	UMODL1	SNP	Silent	21	43505492	C	T	30	49
BRCA	TCGA-A8-A07J	HCCS	SNP	Silent	23	11136711	G	A	33	60
BRCA	TCGA-A8-A07J	SLC7A14	SNP	Silent	3	170201117	G	A	40	56
BRCA	TCGA-A8-A07J	PIK3CA	DEL	In_Frame_Del	3	178928067	CCTCATGGATTAGAAGATTTGCTGAAC	-	18	98
BRCA	TCGA-A8-A07J	CADPS	SNP	Silent	3	62578366	C	T	28	62
BRCA	TCGA-A8-A07J	PCDHGB3	SNP	Missense_Mutation	5	140750139	G	T	41	56
BRCA	TCGA-A8-A07J	MED23	SNP	Missense_Mutation	6	131911508	G	A	47	100
BRCA	TCGA-A8-A07J	FTSJD2	SNP	Silent	6	37427448	G	A	45	54
BRCA	TCGA-A8-A07J	TMEM71	SNP	Missense_Mutation	8	133764157	C	T	31	76
BRCA	TCGA-A8-A07J	DOCK8	SNP	Silent	9	377063	C	T	29	69
BRCA	TCGA-A8-A07L	SETDB1	SNP	Missense_Mutation	1	150921875	A	C	3	84
BRCA	TCGA-A8-A07L	CASQ1	SNP	Silent	1	160165315	C	T	31	51
BRCA	TCGA-A8-A07L	PPOX	SNP	Missense_Mutation	1	161140232	C	T	30	58
BRCA	TCGA-A8-A07L	GPR161	SNP	Missense_Mutation	1	168073818	T	C	55	53
BRCA	TCGA-A8-A07L	F5	SNP	Missense_Mutation	1	169484814	C	A	32	57
BRCA	TCGA-A8-A07L	SELP	SNP	Missense_Mutation	1	169578747	C	G	17	89
BRCA	TCGA-A8-A07L	ASTN1	SNP	Missense_Mutation	1	176863946	A	T	10	88
BRCA	TCGA-A8-A07L	ASTN1	SNP	Silent	1	176918359	C	A	23	43
BRCA	TCGA-A8-A07L	DENND1B	SNP	Missense_Mutation	1	197564409	C	T	20	86
BRCA	TCGA-A8-A07L	CR2	SNP	Missense_Mutation	1	207640226	G	C	43	74
BRCA	TCGA-A8-A07L	CSMD2	SNP	Missense_Mutation	1	34190272	G	T	47	100
BRCA	TCGA-A8-A07L	ZSWIM5	SNP	Missense_Mutation	1	45516799	T	A	51	68
BRCA	TCGA-A8-A07L	DNAJB4	SNP	Missense_Mutation	1	78478898	G	A	47	96
BRCA	TCGA-A8-A07L	MCOLN3	SNP	Missense_Mutation	1	85506801	T	C	53	50
BRCA	TCGA-A8-A07L	NPM3	SNP	Silent	10	103542241	T	C	60	45
BRCA	TCGA-A8-A07L	PSD	SNP	Missense_Mutation	10	104165135	C	T	31	92
BRCA	TCGA-A8-A07L	SORCS3	SNP	Splice_site	10	107015559	G	A	35	99
BRCA	TCGA-A8-A07L	CUZD1	SNP	Translation_Start_Site	10	124605460	C	T	19	38
BRCA	TCGA-A8-A07L	BMS1	SNP	Missense_Mutation	10	43288536	G	T	48	61
BRCA	TCGA-A8-A07L	CAMK2G	SNP	Silent	10	75612979	T	C	56	73
BRCA	TCGA-A8-A07L	FAM22B	SNP	Missense_Mutation	10	81471609	A	G	8	40
BRCA	TCGA-A8-A07L	DYNC2H1	SNP	Nonsense_Mutation	11	103106512	G	T	41	98
BRCA	TCGA-A8-A07L	FAT3	SNP	Missense_Mutation	11	92531007	A	C	6	80
BRCA	TCGA-A8-A07L	GCN1L1	SNP	Missense_Mutation	12	120591040	C	A	25	100
BRCA	TCGA-A8-A07L	C12orf68	SNP	Nonsense_Mutation	12	48578200	C	T	21	75
BRCA	TCGA-A8-A07L	ESYT1	SNP	Silent	12	56531336	T	C	60	52
BRCA	TCGA-A8-A07L	POC1B	SNP	Silent	12	89818992	G	T	37	33
BRCA	TCGA-A8-A07L	DHRS2	SNP	Missense_Mutation	14	24108411	G	A	40	70
BRCA	TCGA-A8-A07L	MTHFD1	SNP	Missense_Mutation	14	64898551	T	A	62	93
BRCA	TCGA-A8-A07L	KCNK10	SNP	Silent	14	88729861	G	C	47	72
BRCA	TCGA-A8-A07L	MOAP1	SNP	Splice_site	14	93650587	T	A	51	52
BRCA	TCGA-A8-A07L	MAPKBP1	SNP	Missense_Mutation	15	42113816	C	G	24	69
BRCA	TCGA-A8-A07L	MAPKBP1	SNP	Missense_Mutation	15	42113838	C	G	30	57
BRCA	TCGA-A8-A07L	TGM5	SNP	Silent	15	43525859	C	T	28	74
BRCA	TCGA-A8-A07L	ARIH1	SNP	Silent	15	72855839	T	C	64	52
BRCA	TCGA-A8-A07L	ACSBG1	SNP	Splice_Site	15	78485847	C	A	18	67
BRCA	TCGA-A8-A07L	BTBD1	SNP	Missense_Mutation	15	83687554	T	G	53	91
BRCA	TCGA-A8-A07L	ADCY9	SNP	Missense_Mutation	16	4163947	G	C	41	55
BRCA	TCGA-A8-A07L	SALL1	SNP	Missense_Mutation	16	51175777	A	T	3	52
BRCA	TCGA-A8-A07L	HYDIN	SNP	Silent	16	70942229	G	A	41	53
BRCA	TCGA-A8-A07L	SLC16A6	SNP	Silent	17	66267701	G	C	45	28
BRCA	TCGA-A8-A07L	ABCA6	SNP	Missense_Mutation	17	67077227	G	A	44	89
BRCA	TCGA-A8-A07L	DSC2	SNP	Missense_Mutation	18	28660146	C	T	27	49
BRCA	TCGA-A8-A07L	OR4F17	SNP	Missense_Mutation	19	110808	T	A	50	47
BRCA	TCGA-A8-A07L	PRX	SNP	Missense_Mutation	19	40901629	C	T	26	55
BRCA	TCGA-A8-A07L	SERTAD3	SNP	Missense_Mutation	19	40947861	G	A	38	59
BRCA	TCGA-A8-A07L	ANKRD24	SNP	Missense_Mutation	19	4217066	G	A	42	59
BRCA	TCGA-A8-A07L	ZFP112	SNP	Missense_Mutation	19	44831696	T	C	51	50
BRCA	TCGA-A8-A07L	PVRL2	SNP	Missense_Mutation	19	45389459	G	A	38	46
BRCA	TCGA-A8-A07L	KIR2DL4	DNP	Missense_Mutation	19	55325383	TC	AA	54	50
BRCA	TCGA-A8-A07L	TGFBRAP1	SNP	Missense_Mutation	2	105883873	G	T	44	62
BRCA	TCGA-A8-A07L	FSIP2	SNP	Nonsense_Mutation	2	186670216	C	T	29	64
BRCA	TCGA-A8-A07L	STAT4	SNP	Silent	2	192012876	C	T	21	47
BRCA	TCGA-A8-A07L	CCDC150	SNP	Missense_Mutation	2	197521456	T	G	64	54
BRCA	TCGA-A8-A07L	FN1	SNP	Silent	2	216271007	C	A	29	52
BRCA	TCGA-A8-A07L	MXD1	SNP	Missense_Mutation	2	70165321	A	C	7	90
BRCA	TCGA-A8-A07L	NFATC2	SNP	Missense_Mutation	20	50092025	G	T	43	100
BRCA	TCGA-A8-A07L	L1CAM	SNP	Silent	23	153128304	G	A	40	43
BRCA	TCGA-A8-A07L	TAB3	DEL	Frame_Shift_Del	23	30872538	G	-	33	87
BRCA	TCGA-A8-A07L	TAB3	DEL	Frame_Shift_Del	23	30872540	TATCCCTCTT	-	49	48
BRCA	TCGA-A8-A07L	TAB3	SNP	Nonsense_Mutation	23	30873405	G	T	45	94
BRCA	TCGA-A8-A07L	SHROOM4	SNP	Missense_Mutation	23	50381258	A	G	7	60
BRCA	TCGA-A8-A07L	MED12	SNP	Missense_Mutation	23	70339989	G	T	35	78
BRCA	TCGA-A8-A07L	ATRX	SNP	Missense_Mutation	23	76849193	C	G	31	95
BRCA	TCGA-A8-A07L	SLITRK3	SNP	Missense_Mutation	3	164906133	G	A	44	95
BRCA	TCGA-A8-A07L	GOLGA4	SNP	Missense_Mutation	3	37367243	A	G	4	49
BRCA	TCGA-A8-A07L	INTS12	SNP	Missense_Mutation	4	106613283	C	T	21	22
BRCA	TCGA-A8-A07L	GSTCD	DEL	Frame_Shift_Del	4	106746874	AAGAGAAGTGATGAACTGGGTTT	-	9	64
BRCA	TCGA-A8-A07L	KIAA1109	SNP	Silent	4	123151230	C	A	19	69
BRCA	TCGA-A8-A07L	BOD1L1	SNP	Silent	4	13603397	G	T	34	41
BRCA	TCGA-A8-A07L	NR3C2	SNP	Missense_Mutation	4	149356793	C	G	28	96
BRCA	TCGA-A8-A07L	CD38	SNP	Missense_Mutation	4	15818253	C	A	24	60
BRCA	TCGA-A8-A07L	STK10	SNP	Missense_Mutation	5	171488230	C	G	26	68
BRCA	TCGA-A8-A07L	VCAN	SNP	Missense_Mutation	5	82832924	A	C	4	47
BRCA	TCGA-A8-A07L	TAAR5	SNP	Missense_Mutation	6	132910035	C	T	25	71
BRCA	TCGA-A8-A07L	ULBP1	SNP	Missense_Mutation	6	150290226	C	T	24	50
BRCA	TCGA-A8-A07L	ARID1B	SNP	Missense_Mutation	6	157527623	A	C	3	75
BRCA	TCGA-A8-A07L	HIST1H2AI	SNP	Nonsense_Mutation	6	27776369	A	T	9	87
BRCA	TCGA-A8-A07L	HLA-G	SNP	Missense_Mutation	6	29797223	C	A	18	61
BRCA	TCGA-A8-A07L	CUL7	SNP	Missense_Mutation	6	43012613	C	T	25	77
BRCA	TCGA-A8-A07L	GPR116	SNP	Missense_Mutation	6	46828615	G	A	43	70
BRCA	TCGA-A8-A07L	RELN	SNP	Splice_site	7	103185571	C	T	24	98
BRCA	TCGA-A8-A07L	FAM180A	SNP	Missense_Mutation	7	135433316	T	A	50	51
BRCA	TCGA-A8-A07L	MGAM	SNP	Missense_Mutation	7	141708438	C	T	32	61
BRCA	TCGA-A8-A07L	EPHB6	SNP	Missense_Mutation	7	142562162	G	T	47	100
BRCA	TCGA-A8-A07L	RNF19A	SNP	Silent	8	101271468	G	A	46	51
BRCA	TCGA-A8-A07L	FAM167A	SNP	Missense_Mutation	8	11301766	C	A	24	51
BRCA	TCGA-A8-A07L	CSMD3	SNP	Missense_Mutation	8	113585739	C	G	17	83
BRCA	TCGA-A8-A07L	ZNF572	SNP	Missense_Mutation	8	125989263	A	T	3	62
BRCA	TCGA-A8-A07L	TRAPPC9	SNP	Missense_Mutation	8	141461333	C	T	23	76
BRCA	TCGA-A8-A07L	AP3M2	SNP	Missense_Mutation	8	42012278	A	G	7	75
BRCA	TCGA-A8-A07L	HGSNAT	SNP	Missense_Mutation	8	43054635	C	A	29	92
BRCA	TCGA-A8-A07L	PSKH2	SNP	Silent	8	87076599	G	C	45	58
BRCA	TCGA-A8-A07L	KIAA1958	SNP	Missense_Mutation	9	115337155	C	A	18	59
BRCA	TCGA-A8-A07L	DFNB31	SNP	Missense_Mutation	9	117188598	G	C	41	65
BRCA	TCGA-A8-A07L	C5	SNP	Missense_Mutation	9	123759853	T	C	62	75
BRCA	TCGA-A8-A07L	ABL1	DEL	Frame_Shift_Del	9	133759842	TTCCC	-	60	78
BRCA	TCGA-A8-A07L	PGM5	SNP	Missense_Mutation	9	71007317	G	A	46	80
BRCA	TCGA-A8-A07O	MTMR11	SNP	Missense_Mutation	1	149908094	G	A	43	51
BRCA	TCGA-A8-A07O	AQP10	SNP	Missense_Mutation	1	154293636	T	C	58	46
BRCA	TCGA-A8-A07O	C1orf85	SNP	Missense_Mutation	1	156263157	C	T	23	83
BRCA	TCGA-A8-A07O	ANKRD13C	SNP	Missense_Mutation	1	70758132	C	T	31	100
BRCA	TCGA-A8-A07O	ATM	SNP	Missense_Mutation	11	108129723	A	C	4	52
BRCA	TCGA-A8-A07O	SCN3B	SNP	Missense_Mutation	11	123513189	G	A	40	65
BRCA	TCGA-A8-A07O	MUC5B	SNP	Missense_Mutation	11	1264973	C	T	22	52
BRCA	TCGA-A8-A07O	TCHP	SNP	Silent	12	110346447	G	A	33	51
BRCA	TCGA-A8-A07O	LRP6	SNP	Missense_Mutation	12	12311946	G	T	45	100
BRCA	TCGA-A8-A07O	GOLGA3	SNP	Missense_Mutation	12	133351858	C	G	32	86
BRCA	TCGA-A8-A07O	SP1	SNP	Silent	12	53776064	T	C	56	58
BRCA	TCGA-A8-A07O	CHD4	SNP	Silent	12	6702335	G	A	48	57
BRCA	TCGA-A8-A07O	NBEA	DEL	In_Frame_Del	13	35733461	AGT	-	3	52
BRCA	TCGA-A8-A07O	CASC5	SNP	Missense_Mutation	15	40921499	G	C	35	55
BRCA	TCGA-A8-A07O	PARP6	SNP	Missense_Mutation	15	72559136	C	T	29	83
BRCA	TCGA-A8-A07O	C16orf79	SNP	Missense_Mutation	16	2259629	C	A	30	75
BRCA	TCGA-A8-A07O	ATXN2L	SNP	Missense_Mutation	16	28842080	C	T	26	54
BRCA	TCGA-A8-A07O	MLYCD	DEL	Splice_Site	16	83948559	AG	-	7	85
BRCA	TCGA-A8-A07O	TP53	SNP	Splice_Site	17	7579311	C	T	18	89
BRCA	TCGA-A8-A07O	LAMA1	SNP	Missense_Mutation	18	7015822	G	A	43	59
BRCA	TCGA-A8-A07O	C19orf80	DEL	Frame_Shift_Del	19	11350320	GTGCCTGCTCT	-	36	48
BRCA	TCGA-A8-A07O	SPHK2	SNP	Missense_Mutation	19	49131440	C	T	31	67
BRCA	TCGA-A8-A07O	MUC16	SNP	Missense_Mutation	19	9063731	C	T	29	50
BRCA	TCGA-A8-A07O	MUC16	SNP	Missense_Mutation	19	9065839	A	C	11	50
BRCA	TCGA-A8-A07O	MARCH7	SNP	Missense_Mutation	2	160605150	C	T	25	63
BRCA	TCGA-A8-A07O	TMEM131	DEL	In_Frame_Del	2	98475800	TGT	-	51	68
BRCA	TCGA-A8-A07O	DLGAP4	SNP	Missense_Mutation	20	35060254	G	A	38	72
BRCA	TCGA-A8-A07O	SALL4	SNP	Silent	20	50400810	G	A	45	53
BRCA	TCGA-A8-A07O	PCMTD2	SNP	Silent	20	62891426	C	T	31	43
BRCA	TCGA-A8-A07O	PANX2	SNP	Silent	22	50616080	C	T	29	64
BRCA	TCGA-A8-A07O	SCO2	SNP	Silent	22	50962301	G	A	40	49
BRCA	TCGA-A8-A07O	CASR	SNP	Silent	3	121980842	C	T	31	50
BRCA	TCGA-A8-A07O	HSPBAP1	SNP	Missense_Mutation	3	122459670	G	A	33	54
BRCA	TCGA-A8-A07O	ACAD11	SNP	Missense_Mutation	3	132378462	G	T	44	52
BRCA	TCGA-A8-A07O	PPM1L	SNP	Missense_Mutation	3	160474474	C	G	32	53
BRCA	TCGA-A8-A07O	UQCRC1	SNP	Missense_Mutation	3	48641015	C	G	18	100
BRCA	TCGA-A8-A07O	C3orf62	SNP	Silent	3	49311552	C	T	29	57
BRCA	TCGA-A8-A07O	NUDT6	SNP	Missense_Mutation	4	123814333	C	T	32	97
BRCA	TCGA-A8-A07O	FGFR4	SNP	Silent	5	176522628	C	T	19	42
BRCA	TCGA-A8-A07O	LAMA4	SNP	Missense_Mutation	6	112512915	C	T	27	65
BRCA	TCGA-A8-A07O	ATXN1	SNP	Missense_Mutation	6	16328465	G	C	41	82
BRCA	TCGA-A8-A07O	ABHD16A	SNP	Missense_Mutation	6	31655488	C	T	32	93
BRCA	TCGA-A8-A07O	LRRC4	SNP	Missense_Mutation	7	127670579	C	T	27	90
BRCA	TCGA-A8-A07O	DNAH11	SNP	Missense_Mutation	7	21805205	G	A	45	83
BRCA	TCGA-A8-A07O	CYP11B2	SNP	Missense_Mutation	8	143994076	T	A	49	65
BRCA	TCGA-A8-A07O	SH2D4A	SNP	Missense_Mutation	8	19231145	C	T	29	79
BRCA	TCGA-A8-A07O	ST18	SNP	Silent	8	53079446	C	T	23	39
BRCA	TCGA-A8-A07O	PREX2	SNP	Missense_Mutation	8	68965476	G	A	39	100
BRCA	TCGA-A8-A07O	PCSK5	SNP	Missense_Mutation	9	78772039	G	A	39	65
BRCA	TCGA-A8-A07P	PSMD4	SNP	Splice_Site	1	151238994	A	G	7	86
BRCA	TCGA-A8-A07P	KPRP	SNP	Missense_Mutation	1	152733785	C	A	25	47
BRCA	TCGA-A8-A07P	CELA2A	SNP	Silent	1	15793991	C	T	23	45
BRCA	TCGA-A8-A07P	ITPKB	SNP	Splice_site	1	226825450	A	G	12	64
BRCA	TCGA-A8-A07P	DMBX1	SNP	Silent	1	46976927	G	T	47	55
BRCA	TCGA-A8-A07P	ATM	DEL	Frame_Shift_Del	11	108164150	GC	-	46	54
BRCA	TCGA-A8-A07P	ATM	SNP	Missense_Mutation	11	108164152	G	T	40	80
BRCA	TCGA-A8-A07P	MLL	SNP	Nonsense_Mutation	11	118350902	C	T	29	98
BRCA	TCGA-A8-A07P	OR51G2	SNP	Missense_Mutation	11	4936757	C	T	26	68
BRCA	TCGA-A8-A07P	P2RX3	SNP	Missense_Mutation	11	57114069	G	C	36	57
BRCA	TCGA-A8-A07P	DTX1	SNP	Missense_Mutation	12	113532684	C	T	23	66
BRCA	TCGA-A8-A07P	WDR66	SNP	Silent	12	122437780	C	T	31	28
BRCA	TCGA-A8-A07P	SLC15A4	SNP	Missense_Mutation	12	129285502	C	A	32	79
BRCA	TCGA-A8-A07P	MRPS35	SNP	Nonsense_Mutation	12	27890496	C	T	19	50
BRCA	TCGA-A8-A07P	AQP6	SNP	Silent	12	50368232	T	A	63	47
BRCA	TCGA-A8-A07P	GLI1	SNP	Silent	12	57859576	C	T	22	51
BRCA	TCGA-A8-A07P	C13orf33	SNP	Missense_Mutation	13	31495228	A	G	8	74
BRCA	TCGA-A8-A07P	C14orf159	SNP	Splice_Site	14	91639748	G	A	44	54
BRCA	TCGA-A8-A07P	ATP10A	SNP	Missense_Mutation	15	25925049	C	A	20	55
BRCA	TCGA-A8-A07P	RYR3	SNP	Missense_Mutation	15	34131109	G	T	41	65
BRCA	TCGA-A8-A07P	IL16	SNP	Silent	15	81517749	G	A	38	37
BRCA	TCGA-A8-A07P	PAFAH1B1	SNP	Missense_Mutation	17	2575983	G	T	46	98
BRCA	TCGA-A8-A07P	C17orf102	SNP	Missense_Mutation	17	32905986	C	T	19	50
BRCA	TCGA-A8-A07P	NR1D1	SNP	Missense_Mutation	17	38251892	A	T	16	51
BRCA	TCGA-A8-A07P	L3MBTL4	INS	Frame_Shift_Ins	18	6080916	-	T	24	76
BRCA	TCGA-A8-A07P	SERPINB7	SNP	Missense_Mutation	18	61471507	T	A	51	76
BRCA	TCGA-A8-A07P	ATG4D	SNP	Missense_Mutation	19	10663675	C	T	23	68
BRCA	TCGA-A8-A07P	SIGLEC9	SNP	Missense_Mutation	19	51629052	A	G	8	62
BRCA	TCGA-A8-A07P	AFF3	SNP	Missense_Mutation	2	100623894	C	T	23	98
BRCA	TCGA-A8-A07P	SLC20A1	SNP	Silent	2	113405016	C	T	29	62
BRCA	TCGA-A8-A07P	LY75-CD302	DEL	In_Frame_Del	2	160628389	TTC	-	64	63
BRCA	TCGA-A8-A07P	HADHA	SNP	Silent	2	26417472	C	T	27	43
BRCA	TCGA-A8-A07P	CMPK2	SNP	Nonsense_Mutation	2	6990088	G	A	47	53
BRCA	TCGA-A8-A07P	CTNNA2	SNP	Missense_Mutation	2	80136769	C	T	23	100
BRCA	TCGA-A8-A07P	FABP1	SNP	Missense_Mutation	2	88425708	C	T	22	92
BRCA	TCGA-A8-A07P	NRIP1	SNP	Missense_Mutation	21	16338239	G	A	42	83
BRCA	TCGA-A8-A07P	ODZ1	SNP	Missense_Mutation	23	123680767	C	T	30	94
BRCA	TCGA-A8-A07P	PPEF1	SNP	Nonsense_Mutation	23	18768068	C	T	17	55
BRCA	TCGA-A8-A07P	C3orf24	SNP	Missense_Mutation	3	10146188	G	A	42	82
BRCA	TCGA-A8-A07P	TP63	SNP	Silent	3	189582203	C	T	19	41
BRCA	TCGA-A8-A07P	STOX2	SNP	Silent	4	184932355	G	T	33	45
BRCA	TCGA-A8-A07P	STIM2	SNP	Silent	4	27009202	C	T	25	55
BRCA	TCGA-A8-A07P	ATP8A1	SNP	Missense_Mutation	4	42416696	C	A	32	82
BRCA	TCGA-A8-A07P	GRM6	SNP	Silent	5	178408823	G	T	35	62
BRCA	TCGA-A8-A07P	ADTRP	SNP	Splice_Site	6	11768480	A	G	14	82
BRCA	TCGA-A8-A07P	KCNK5	SNP	Missense_Mutation	6	39158914	C	T	27	73
BRCA	TCGA-A8-A07P	TREML2	SNP	Silent	6	41162312	G	A	39	44
BRCA	TCGA-A8-A07P	CHRM2	SNP	Missense_Mutation	7	136699781	G	A	40	100
BRCA	TCGA-A8-A07P	RAD21	DEL	Frame_Shift_Del	8	117875465	AG	-	3	71
BRCA	TCGA-A8-A07P	PSMD5	SNP	Nonsense_Mutation	9	123593626	G	A	37	72
BRCA	TCGA-A8-A07P	SETX	SNP	Missense_Mutation	9	135211712	T	C	50	83
BRCA	TCGA-A8-A07P	CACFD1	SNP	Missense_Mutation	9	136333148	A	T	1	45
BRCA	TCGA-A8-A07P	KDM4C	SNP	Missense_Mutation	9	6814672	G	A	38	100
BRCA	TCGA-A8-A07P	LOC100287354	SNP	Missense_Mutation	9	68455095	G	C	43	48
BRCA	TCGA-A8-A07R	OVGP1	SNP	Missense_Mutation	1	111963924	G	C	46	70
BRCA	TCGA-A8-A07R	SLC22A15	SNP	Silent	1	116574176	A	T	10	48
BRCA	TCGA-A8-A07R	MAD2L2	INS	In_Frame_Ins	1	11740518	-	ATT	8	48
BRCA	TCGA-A8-A07R	KIAA2013	SNP	Silent	1	11982630	C	T	30	66
BRCA	TCGA-A8-A07R	POLR3GL	SNP	Splice_site	1	145457935	C	G	21	89
BRCA	TCGA-A8-A07R	RPRD2	SNP	Silent	1	150443698	C	T	26	65
BRCA	TCGA-A8-A07R	PRUNE	SNP	Silent	1	150999788	A	C	16	47
BRCA	TCGA-A8-A07R	LCE1C	SNP	Missense_Mutation	1	152777833	G	A	33	68
BRCA	TCGA-A8-A07R	ADAR	SNP	Missense_Mutation	1	154574808	G	A	34	50
BRCA	TCGA-A8-A07R	NTRK1	SNP	Missense_Mutation	1	156843468	C	G	20	58
BRCA	TCGA-A8-A07R	FHAD1	SNP	Missense_Mutation	1	15707257	G	T	41	65
BRCA	TCGA-A8-A07R	SLAMF9	SNP	Missense_Mutation	1	159923329	A	G	12	56
BRCA	TCGA-A8-A07R	NHLH1	SNP	Missense_Mutation	1	160340790	C	T	26	72
BRCA	TCGA-A8-A07R	SPEN	SNP	Splice_site	1	16247478	G	T	35	99
BRCA	TCGA-A8-A07R	FAM5B	SNP	Silent	1	177245552	C	A	23	49
BRCA	TCGA-A8-A07R	CHI3L1	SNP	Silent	1	203149664	G	A	43	50
BRCA	TCGA-A8-A07R	C4BPB	SNP	Missense_Mutation	1	207265113	C	G	26	58
BRCA	TCGA-A8-A07R	USH2A	SNP	Silent	1	216138717	G	C	42	52
BRCA	TCGA-A8-A07R	HSPG2	DEL	Frame_Shift_Del	1	22155911	C	-	26	67
BRCA	TCGA-A8-A07R	CAPN8	SNP	Splice_site	1	223717545	C	A	18	92
BRCA	TCGA-A8-A07R	WDR26	SNP	Silent	1	224612368	G	A	33	82
BRCA	TCGA-A8-A07R	LBR	SNP	Missense_Mutation	1	225599115	C	T	26	100
BRCA	TCGA-A8-A07R	OR2T12	SNP	Silent	1	248458059	G	A	35	29
BRCA	TCGA-A8-A07R	RHD	SNP	Missense_Mutation	1	25599163	A	T	3	52
BRCA	TCGA-A8-A07R	RHCE	SNP	Missense_Mutation	1	25747153	T	A	56	48
BRCA	TCGA-A8-A07R	ARID1A	SNP	Missense_Mutation	1	27089688	G	T	35	98
BRCA	TCGA-A8-A07R	AK2	SNP	Missense_Mutation	1	33490155	G	C	34	97
BRCA	TCGA-A8-A07R	C1orf174	SNP	Missense_Mutation	1	3807144	C	G	29	81
BRCA	TCGA-A8-A07R	KIAA0754	SNP	Missense_Mutation	1	39878587	C	G	24	59
BRCA	TCGA-A8-A07R	DAB1	SNP	Missense_Mutation	1	57480646	C	A	18	61
BRCA	TCGA-A8-A07R	MCOLN2	SNP	Splice_site	1	85405236	C	T	24	83
BRCA	TCGA-A8-A07R	ENTPD7	SNP	Missense_Mutation	10	101455752	G	C	43	83
BRCA	TCGA-A8-A07R	NRP1	SNP	Nonsense_Mutation	10	33475378	G	A	45	84
BRCA	TCGA-A8-A07R	C10orf25	DEL	Frame_Shift_Del	10	45495833	ACTGAGC	-	10	49
BRCA	TCGA-A8-A07R	AKR1C4	SNP	Missense_Mutation	10	5248263	G	C	41	83
BRCA	TCGA-A8-A07R	FAM208B	SNP	Missense_Mutation	10	5791187	A	C	5	59
BRCA	TCGA-A8-A07R	HKDC1	SNP	Missense_Mutation	10	71003105	A	C	5	78
BRCA	TCGA-A8-A07R	CAMK2G	SNP	Missense_Mutation	10	75620617	A	G	16	88
BRCA	TCGA-A8-A07R	ITIH2	SNP	Silent	10	7769757	G	C	45	66
BRCA	TCGA-A8-A07R	OPN4	SNP	Missense_Mutation	10	88422113	T	C	55	70
BRCA	TCGA-A8-A07R	SLC16A12	SNP	Silent	10	91195821	G	A	37	44
BRCA	TCGA-A8-A07R	MCAM	SNP	Missense_Mutation	11	119183561	G	C	47	70
BRCA	TCGA-A8-A07R	RCN1	SNP	Missense_Mutation	11	32122121	G	A	39	72
BRCA	TCGA-A8-A07R	OR52K2	SNP	Missense_Mutation	11	4471322	A	T	15	48
BRCA	TCGA-A8-A07R	OR4C13	SNP	Missense_Mutation	11	49974137	T	A	50	54
BRCA	TCGA-A8-A07R	OR5T1	SNP	Missense_Mutation	11	56043743	T	C	53	58
BRCA	TCGA-A8-A07R	OR56A1	SNP	Silent	11	6048683	G	A	45	59
BRCA	TCGA-A8-A07R	TMEM223	INS	Frame_Shift_Ins	11	62559273	-	C	46	56
BRCA	TCGA-A8-A07R	SLC3A2	SNP	Missense_Mutation	11	62656079	C	G	23	58
BRCA	TCGA-A8-A07R	SPTBN2	SNP	Missense_Mutation	11	66455691	G	T	35	83
BRCA	TCGA-A8-A07R	INPPL1	SNP	Silent	11	71939469	C	T	26	54
BRCA	TCGA-A8-A07R	C2CD3	SNP	Missense_Mutation	11	73829409	T	G	55	81
BRCA	TCGA-A8-A07R	ODZ4	SNP	Missense_Mutation	11	78380642	C	A	29	100
BRCA	TCGA-A8-A07R	DENND5A	SNP	Nonsense_Mutation	11	9225258	G	A	45	100
BRCA	TCGA-A8-A07R	TMEM41B	SNP	Splice_Site	11	9316935	C	G	32	100
BRCA	TCGA-A8-A07R	CRY1	SNP	Missense_Mutation	12	107391414	C	A	30	100
BRCA	TCGA-A8-A07R	HECTD4	SNP	Missense_Mutation	12	112677797	G	C	46	100
BRCA	TCGA-A8-A07R	NOS1	SNP	Missense_Mutation	12	117681129	C	G	17	68
BRCA	TCGA-A8-A07R	LRP6	SNP	Silent	12	12334290	G	A	33	60
BRCA	TCGA-A8-A07R	TCTN2	SNP	Silent	12	124189164	C	T	30	63
BRCA	TCGA-A8-A07R	DNAH10	SNP	Missense_Mutation	12	124320025	C	T	20	62
BRCA	TCGA-A8-A07R	IRAK4	SNP	Missense_Mutation	12	44176156	T	G	56	90
BRCA	TCGA-A8-A07R	MSRB3	SNP	Missense_Mutation	12	65720647	C	A	21	73
BRCA	TCGA-A8-A07R	CHD4	SNP	Nonsense_Mutation	12	6707089	C	T	30	95
BRCA	TCGA-A8-A07R	LIG4	SNP	Missense_Mutation	13	108861606	C	T	32	71
BRCA	TCGA-A8-A07R	LIG4	SNP	Nonsense_Mutation	13	108862659	T	A	63	50
BRCA	TCGA-A8-A07R	MYO16	SNP	Missense_Mutation	13	109617177	C	A	24	47
BRCA	TCGA-A8-A07R	SKA3	SNP	Missense_Mutation	13	21729839	C	G	32	64
BRCA	TCGA-A8-A07R	EBPL	DEL	Frame_Shift_Del	13	50237261	CAGAATTTCCA	-	29	52
BRCA	TCGA-A8-A07R	MYH6	SNP	Missense_Mutation	14	23857373	G	C	36	63
BRCA	TCGA-A8-A07R	RIPK3	SNP	Silent	14	24808794	A	T	6	40
BRCA	TCGA-A8-A07R	PSMA6	SNP	Splice_site	14	35778201	G	T	35	100
BRCA	TCGA-A8-A07R	SYNE2	SNP	Missense_Mutation	14	64600895	G	C	36	51
BRCA	TCGA-A8-A07R	RYR3	SNP	Missense_Mutation	15	33990151	C	T	19	98
BRCA	TCGA-A8-A07R	MAP1A	DEL	Frame_Shift_Del	15	43819341	GCAGGAGGGG	-	46	57
BRCA	TCGA-A8-A07R	MYO5C	SNP	Missense_Mutation	15	52497266	C	T	28	98
BRCA	TCGA-A8-A07R	ALDH1A2	SNP	Missense_Mutation	15	58357803	G	T	43	67
BRCA	TCGA-A8-A07R	IQCH	SNP	Missense_Mutation	15	67555536	C	T	20	65
BRCA	TCGA-A8-A07R	PAQR5	SNP	Missense_Mutation	15	69652466	C	G	22	74
BRCA	TCGA-A8-A07R	LRRC28	SNP	Missense_Mutation	15	99874329	C	G	21	96
BRCA	TCGA-A8-A07R	ACSM1	SNP	Missense_Mutation	16	20648499	G	C	35	33
BRCA	TCGA-A8-A07R	ABCA3	SNP	Missense_Mutation	16	2347904	G	C	45	54
BRCA	TCGA-A8-A07R	KDM8	SNP	Missense_Mutation	16	27232004	G	A	40	75
BRCA	TCGA-A8-A07R	ASPHD1	SNP	Silent	16	29913171	C	T	23	36
BRCA	TCGA-A8-A07R	ZNF646	SNP	Missense_Mutation	16	31089275	G	A	42	51
BRCA	TCGA-A8-A07R	MEFV	SNP	Missense_Mutation	16	3293337	C	T	19	58
BRCA	TCGA-A8-A07R	MGRN1	SNP	Missense_Mutation	16	4723519	C	G	27	49
BRCA	TCGA-A8-A07R	ROGDI	SNP	Missense_Mutation	16	4848160	G	T	41	65
BRCA	TCGA-A8-A07R	ZNF423	SNP	Missense_Mutation	16	49764856	C	G	31	78
BRCA	TCGA-A8-A07R	SNX20	SNP	Missense_Mutation	16	50707855	A	G	6	87
BRCA	TCGA-A8-A07R	NLRC5	DEL	In_Frame_Del	16	57115479	CTGGCTGAAGGA	-	24	62
BRCA	TCGA-A8-A07R	MMP15	SNP	Silent	16	58077431	C	T	19	40
BRCA	TCGA-A8-A07R	DYNC1LI2	SNP	Missense_Mutation	16	66766325	C	G	17	69
BRCA	TCGA-A8-A07R	TMED6	SNP	Nonsense_Mutation	16	69381693	C	A	29	57
BRCA	TCGA-A8-A07R	SGSM2	SNP	Missense_Mutation	17	2265536	G	C	44	64
BRCA	TCGA-A8-A07R	JUP	SNP	Missense_Mutation	17	39777038	G	T	46	65
BRCA	TCGA-A8-A07R	NAGLU	SNP	Missense_Mutation	17	40695472	A	G	16	86
BRCA	TCGA-A8-A07R	CNTNAP1	SNP	Missense_Mutation	17	40840959	G	A	41	81
BRCA	TCGA-A8-A07R	GPATCH8	SNP	Missense_Mutation	17	42475662	C	G	28	44
BRCA	TCGA-A8-A07R	PLCD3	SNP	Missense_Mutation	17	43190567	T	A	58	90
BRCA	TCGA-A8-A07R	MRC2	SNP	Missense_Mutation	17	60749168	C	G	28	75
BRCA	TCGA-A8-A07R	STRADA	SNP	Missense_Mutation	17	61787935	C	T	26	98
BRCA	TCGA-A8-A07R	GPS2	DEL	Frame_Shift_Del	17	7216985	TGTCCATGCTCTGGTGTCCC	-	63	69
BRCA	TCGA-A8-A07R	TP53	SNP	Missense_Mutation	17	7577539	G	A	39	60
BRCA	TCGA-A8-A07R	CARD14	SNP	Missense_Mutation	17	78157893	C	G	17	53
BRCA	TCGA-A8-A07R	CTC1	SNP	Missense_Mutation	17	8141744	T	C	49	54
BRCA	TCGA-A8-A07R	EPB41L3	SNP	Silent	18	5434036	G	T	35	52
BRCA	TCGA-A8-A07R	VPS4B	SNP	Missense_Mutation	18	61071015	C	G	25	100
BRCA	TCGA-A8-A07R	CYP4F11	SNP	Silent	19	16025600	C	G	25	48
BRCA	TCGA-A8-A07R	MAST3	SNP	Silent	19	18254639	C	T	21	50
BRCA	TCGA-A8-A07R	HOMER3	DEL	Frame_Shift_Del	19	19042357	C	-	27	41
BRCA	TCGA-A8-A07R	ZNF90	SNP	Missense_Mutation	19	20229739	G	C	42	66
BRCA	TCGA-A8-A07R	MAG	SNP	Missense_Mutation	19	35802828	G	A	40	59
BRCA	TCGA-A8-A07R	GPR42	SNP	Silent	19	35862267	T	C	49	51
BRCA	TCGA-A8-A07R	ZNF233	SNP	Nonsense_Mutation	19	44771096	C	T	21	50
BRCA	TCGA-A8-A07R	STRN4	SNP	Missense_Mutation	19	47231375	G	A	34	60
BRCA	TCGA-A8-A07R	AP2A1	SNP	Missense_Mutation	19	50295317	A	G	6	88
BRCA	TCGA-A8-A07R	ACPT	SNP	Missense_Mutation	19	51297015	G	C	47	58
BRCA	TCGA-A8-A07R	PRKCG	SNP	Missense_Mutation	19	54401697	A	C	12	72
BRCA	TCGA-A8-A07R	NLRP2	SNP	Missense_Mutation	19	55493680	T	C	62	64
BRCA	TCGA-A8-A07R	ZNF544	SNP	Missense_Mutation	19	58773426	C	T	19	50
BRCA	TCGA-A8-A07R	INSR	SNP	Silent	19	7122974	C	T	24	51
BRCA	TCGA-A8-A07R	GALNT5	SNP	Missense_Mutation	2	158114775	C	T	26	59
BRCA	TCGA-A8-A07R	METTL8	SNP	Missense_Mutation	2	172195922	T	A	54	56
BRCA	TCGA-A8-A07R	UGT1A8	SNP	Silent	2	234526443	A	C	15	49
BRCA	TCGA-A8-A07R	COL6A3	SNP	Missense_Mutation	2	238253387	A	G	10	91
BRCA	TCGA-A8-A07R	FAM179A	SNP	Missense_Mutation	2	29259480	C	T	26	63
BRCA	TCGA-A8-A07R	LTBP1	SNP	Missense_Mutation	2	33518252	C	G	19	41
BRCA	TCGA-A8-A07R	ALMS1	SNP	Silent	2	73677062	A	C	6	40
BRCA	TCGA-A8-A07R	SOGA1	SNP	Silent	20	35445813	C	A	25	46
BRCA	TCGA-A8-A07R	ARHGAP40	SNP	Missense_Mutation	20	37267951	T	A	64	54
BRCA	TCGA-A8-A07R	PLCB1	SNP	Missense_Mutation	20	8719944	G	A	36	98
BRCA	TCGA-A8-A07R	PKNOX1	SNP	Missense_Mutation	21	44438269	G	A	44	76
BRCA	TCGA-A8-A07R	SREBF2	SNP	Missense_Mutation	22	42273963	G	C	45	68
BRCA	TCGA-A8-A07R	PDZD4	SNP	Missense_Mutation	23	153070217	C	T	31	80
BRCA	TCGA-A8-A07R	SLC10A3	DEL	Frame_Shift_Del	23	153716489	G	-	37	80
BRCA	TCGA-A8-A07R	SLC10A3	DEL	Frame_Shift_Del	23	153716700	A	-	15	87
BRCA	TCGA-A8-A07R	POLA1	SNP	Nonsense_Mutation	23	25014005	C	T	23	45
BRCA	TCGA-A8-A07R	SLC35A2	DEL	Frame_Shift_Del	23	48767129	C	-	18	74
BRCA	TCGA-A8-A07R	AR	SNP	Missense_Mutation	23	66931270	C	A	32	62
BRCA	TCGA-A8-A07R	CXCR3	SNP	Missense_Mutation	23	70837027	C	T	32	93
BRCA	TCGA-A8-A07R	ADPRH	SNP	Nonsense_Mutation	3	119306587	C	A	28	62
BRCA	TCGA-A8-A07R	C3orf25	SNP	Missense_Mutation	3	129123000	C	T	27	50
BRCA	TCGA-A8-A07R	ESYT3	SNP	Missense_Mutation	3	138153870	G	A	38	54
BRCA	TCGA-A8-A07R	RTP2	SNP	Missense_Mutation	3	187419769	G	C	46	63
BRCA	TCGA-A8-A07R	NEK10	SNP	Missense_Mutation	3	27233594	G	C	40	76
BRCA	TCGA-A8-A07R	VPRBP	SNP	Nonsense_Mutation	3	51450832	G	A	46	97
BRCA	TCGA-A8-A07R	FABP2	SNP	Missense_Mutation	4	120243210	G	C	48	49
BRCA	TCGA-A8-A07R	BBS12	SNP	Silent	4	123664820	G	C	47	58
BRCA	TCGA-A8-A07R	WHSC1	SNP	Missense_Mutation	4	1936971	C	G	17	53
BRCA	TCGA-A8-A07R	ANAPC4	SNP	Splice_Site	4	25408876	G	T	44	92
BRCA	TCGA-A8-A07R	COX7B2	SNP	Missense_Mutation	4	46737103	T	C	50	68
BRCA	TCGA-A8-A07R	NPFFR2	SNP	Missense_Mutation	4	73012701	G	C	36	44
BRCA	TCGA-A8-A07R	CPZ	SNP	Missense_Mutation	4	8603072	G	C	38	49
BRCA	TCGA-A8-A07R	CTNND2	INS	Frame_Shift_Ins	5	11364989	-	A	35	54
BRCA	TCGA-A8-A07R	PCDHGB1	SNP	Silent	5	140731702	G	A	38	39
BRCA	TCGA-A8-A07R	PCDHGA4	SNP	Silent	5	140736102	C	A	29	49
BRCA	TCGA-A8-A07R	TRIO	SNP	Silent	5	14492843	C	G	23	49
BRCA	TCGA-A8-A07R	FAT2	SNP	Silent	5	150946624	G	A	42	42
BRCA	TCGA-A8-A07R	DOCK2	INS	Frame_Shift_Ins	5	169446012	-	T	11	90
BRCA	TCGA-A8-A07R	BASP1	SNP	Silent	5	17275511	C	T	23	47
BRCA	TCGA-A8-A07R	FAM193B	SNP	Missense_Mutation	5	176963678	C	T	23	83
BRCA	TCGA-A8-A07R	SLC45A2	SNP	Missense_Mutation	5	33954536	C	G	25	89
BRCA	TCGA-A8-A07R	FAM169A	SNP	Missense_Mutation	5	74109758	C	A	32	92
BRCA	TCGA-A8-A07R	KIAA0825	DEL	In_Frame_Del	5	93798258	TTG	-	52	80
BRCA	TCGA-A8-A07R	NHSL1	SNP	Missense_Mutation	6	138751578	C	A	30	71
BRCA	TCGA-A8-A07R	LATS1	SNP	Missense_Mutation	6	149983176	G	C	41	84
BRCA	TCGA-A8-A07R	PCMT1	SNP	Missense_Mutation	6	150092324	G	C	36	96
BRCA	TCGA-A8-A07R	WTAP	SNP	Missense_Mutation	6	160164787	G	A	37	100
BRCA	TCGA-A8-A07R	IGF2R	SNP	Missense_Mutation	6	160509069	C	G	17	60
BRCA	TCGA-A8-A07R	OR2B3	SNP	Missense_Mutation	6	29055004	A	G	11	69
BRCA	TCGA-A8-A07R	C6orf25	SNP	Missense_Mutation	6	31691562	G	A	39	60
BRCA	TCGA-A8-A07R	PPP2R5D	SNP	Missense_Mutation	6	42977150	C	A	22	100
BRCA	TCGA-A8-A07R	ENPP4	SNP	Missense_Mutation	6	46108934	T	G	63	60
BRCA	TCGA-A8-A07R	PHF3	SNP	Missense_Mutation	6	64422056	A	C	3	46
BRCA	TCGA-A8-A07R	EYS	SNP	Missense_Mutation	6	64436527	C	G	30	90
BRCA	TCGA-A8-A07R	COL12A1	SNP	Missense_Mutation	6	75839836	G	A	41	76
BRCA	TCGA-A8-A07R	FILIP1	SNP	Silent	6	76022557	G	A	38	36
BRCA	TCGA-A8-A07R	UBE2J1	SNP	Missense_Mutation	6	90045035	G	C	46	97
BRCA	TCGA-A8-A07R	MDN1	SNP	Nonsense_Mutation	6	90397097	G	A	45	80
BRCA	TCGA-A8-A07R	DOCK4	DEL	Splice_Site	7	111644188	TGTAAA	-	55	84
BRCA	TCGA-A8-A07R	SLC13A1	SNP	Nonsense_Mutation	7	122769492	G	A	48	65
BRCA	TCGA-A8-A07R	FAM131B	SNP	Missense_Mutation	7	143054107	C	T	26	67
BRCA	TCGA-A8-A07R	ZNF862	SNP	Missense_Mutation	7	149558861	C	T	19	56
BRCA	TCGA-A8-A07R	MLL3	SNP	Missense_Mutation	7	151860091	A	G	2	60
BRCA	TCGA-A8-A07R	STK31	SNP	Splice_Site	7	23751906	G	T	44	77
BRCA	TCGA-A8-A07R	CLIP2	SNP	Missense_Mutation	7	73791030	G	A	37	73
BRCA	TCGA-A8-A07R	MAGI2	SNP	Missense_Mutation	7	77764386	T	A	51	94
BRCA	TCGA-A8-A07R	CACNA2D1	DEL	In_Frame_Del	7	81579759	GATTCCAAT	-	41	57
BRCA	TCGA-A8-A07R	TMEM74	SNP	Missense_Mutation	8	109796471	G	A	40	59
BRCA	TCGA-A8-A07R	PKHD1L1	SNP	Missense_Mutation	8	110520355	C	T	24	61
BRCA	TCGA-A8-A07R	MTSS1	SNP	Splice_site	8	125601952	G	T	38	50
BRCA	TCGA-A8-A07R	CSMD1	SNP	Silent	8	2857623	A	T	6	81
BRCA	TCGA-A8-A07R	NRG1	SNP	Silent	8	32621347	G	T	39	50
BRCA	TCGA-A8-A07R	ANK1	SNP	Missense_Mutation	8	41530136	C	T	23	59
BRCA	TCGA-A8-A07R	CLVS1	SNP	Missense_Mutation	8	62412081	C	G	26	92
BRCA	TCGA-A8-A07R	ZBTB10	SNP	Missense_Mutation	8	81399784	C	G	21	80
BRCA	TCGA-A8-A07R	PTDSS1	SNP	Missense_Mutation	8	97285557	G	T	41	80
BRCA	TCGA-A8-A07R	OR13C9	SNP	Missense_Mutation	9	107380041	A	T	7	72
BRCA	TCGA-A8-A07R	LRSAM1	DEL	Frame_Shift_Del	9	130245270	CT	-	20	67
BRCA	TCGA-A8-A07R	PPP2R4	SNP	Missense_Mutation	9	131890307	G	C	46	33
BRCA	TCGA-A8-A07R	DDX31	SNP	Missense_Mutation	9	135505736	G	A	39	73
BRCA	TCGA-A8-A07R	ACO1	SNP	Missense_Mutation	9	32440470	T	A	59	91
BRCA	TCGA-A8-A07R	DNAI1	SNP	Silent	9	34500814	C	A	26	54
BRCA	TCGA-A8-A07R	FAM221B	SNP	Missense_Mutation	9	35819000	C	T	25	47
BRCA	TCGA-A8-A07R	JAK2	SNP	Missense_Mutation	9	5022151	T	C	55	80
BRCA	TCGA-A8-A07U	HNRNPU	SNP	Silent	1	245027315	G	A	33	65
BRCA	TCGA-A8-A07U	ABCB9	SNP	Missense_Mutation	12	123424624	G	C	43	54
BRCA	TCGA-A8-A07U	POC1B	SNP	Missense_Mutation	12	89818991	C	A	27	78
BRCA	TCGA-A8-A07U	SKA3	SNP	Silent	13	21742333	C	A	29	44
BRCA	TCGA-A8-A07U	MEFV	SNP	Missense_Mutation	16	3293331	C	A	26	97
BRCA	TCGA-A8-A07U	CACNA1G	SNP	Missense_Mutation	17	48669336	T	G	51	50
BRCA	TCGA-A8-A07U	TP53	DEL	Frame_Shift_Del	17	7576863	A	-	9	60
BRCA	TCGA-A8-A07U	SLC1A6	SNP	Silent	19	15061145	G	A	37	48
BRCA	TCGA-A8-A07U	PSG6	SNP	Missense_Mutation	19	43414783	G	A	40	18
BRCA	TCGA-A8-A07U	MUM1L1	DEL	In_Frame_Del	23	105449533	TCT	-	54	43
BRCA	TCGA-A8-A07U	TPRG1	SNP	Missense_Mutation	3	188925280	C	T	23	52
BRCA	TCGA-A8-A07U	PCDHB10	SNP	Silent	5	140574447	G	A	39	25
BRCA	TCGA-A8-A07U	TULP4	SNP	Silent	6	158924160	G	C	45	38
BRCA	TCGA-A8-A07U	DDR1	SNP	Missense_Mutation	6	30864625	G	C	37	96
BRCA	TCGA-A8-A07U	PTPN12	SNP	Missense_Mutation	7	77210798	A	T	16	69
BRCA	TCGA-A8-A07W	RAB25	SNP	Missense_Mutation	1	156038184	G	A	46	98
BRCA	TCGA-A8-A07W	SPEN	SNP	Silent	1	16258804	G	C	45	55
BRCA	TCGA-A8-A07W	EMC1	DEL	In_Frame_Del	1	19546186	CTC	-	32	75
BRCA	TCGA-A8-A07W	HHAT	SNP	Silent	1	210637883	C	T	19	48
BRCA	TCGA-A8-A07W	XKR8	SNP	Silent	1	28293114	G	C	47	53
BRCA	TCGA-A8-A07W	GMEB1	SNP	Missense_Mutation	1	29041080	C	T	31	67
BRCA	TCGA-A8-A07W	TNFRSF9	SNP	Silent	1	7995128	G	A	39	26
BRCA	TCGA-A8-A07W	HPS6	SNP	Missense_Mutation	10	103825919	G	A	46	62
BRCA	TCGA-A8-A07W	MCM10	SNP	Missense_Mutation	10	13237244	T	G	55	69
BRCA	TCGA-A8-A07W	CACNB2	SNP	Missense_Mutation	10	18828215	A	T	3	50
BRCA	TCGA-A8-A07W	MYO3A	SNP	Silent	10	26462784	G	A	35	44
BRCA	TCGA-A8-A07W	GAD2	SNP	Missense_Mutation	10	26589870	C	T	19	98
BRCA	TCGA-A8-A07W	PCDH15	SNP	Silent	10	55581735	A	T	15	31
BRCA	TCGA-A8-A07W	CCAR1	SNP	Missense_Mutation	10	70547978	A	C	14	89
BRCA	TCGA-A8-A07W	PRF1	DEL	Frame_Shift_Del	10	72358847	G	-	39	39
BRCA	TCGA-A8-A07W	CDH23	SNP	Silent	10	73553339	C	T	19	34
BRCA	TCGA-A8-A07W	IFIT3	SNP	Silent	10	91099111	C	A	24	46
BRCA	TCGA-A8-A07W	CYP2C19	SNP	Missense_Mutation	10	96609770	G	T	35	54
BRCA	TCGA-A8-A07W	PCSK7	SNP	Splice_Site	11	117098039	C	T	32	86
BRCA	TCGA-A8-A07W	TSG101	SNP	Missense_Mutation	11	18503191	C	T	30	98
BRCA	TCGA-A8-A07W	OR4S1	SNP	Missense_Mutation	11	48328672	T	C	60	77
BRCA	TCGA-A8-A07W	OR52B6	SNP	Missense_Mutation	11	5603050	G	A	35	54
BRCA	TCGA-A8-A07W	FZD4	SNP	Silent	11	86663462	G	A	41	72
BRCA	TCGA-A8-A07W	FAT3	SNP	Missense_Mutation	11	92086557	G	T	43	86
BRCA	TCGA-A8-A07W	HECTD4	SNP	Splice_site	12	112707652	A	G	6	90
BRCA	TCGA-A8-A07W	LOC100287897	SNP	Missense_Mutation	12	113401111	C	T	26	43
BRCA	TCGA-A8-A07W	BORA	SNP	Missense_Mutation	13	73321012	G	C	33	55
BRCA	TCGA-A8-A07W	NRXN3	SNP	Missense_Mutation	14	79181294	G	A	38	80
BRCA	TCGA-A8-A07W	FANCI	SNP	Missense_Mutation	15	89850860	C	G	32	100
BRCA	TCGA-A8-A07W	ZNF205	SNP	Missense_Mutation	16	3170063	C	T	23	61
BRCA	TCGA-A8-A07W	LOC100132364	SNP	Missense_Mutation	16	69776159	C	T	17	59
BRCA	TCGA-A8-A07W	TADA2A	SNP	Missense_Mutation	17	35825613	T	G	59	58
BRCA	TCGA-A8-A07W	TP53	SNP	Missense_Mutation	17	7578394	T	C	51	89
BRCA	TCGA-A8-A07W	TNRC6C	SNP	Missense_Mutation	17	76045634	C	T	19	83
BRCA	TCGA-A8-A07W	MYH10	SNP	Silent	17	8396259	G	A	40	52
BRCA	TCGA-A8-A07W	MYO5B	SNP	Missense_Mutation	18	47500828	G	A	38	100
BRCA	TCGA-A8-A07W	OR7A10	SNP	Silent	19	14952057	G	T	45	45
BRCA	TCGA-A8-A07W	ZNF536	SNP	Missense_Mutation	19	30936439	G	A	38	97
BRCA	TCGA-A8-A07W	ENSG00000224476	SNP	Missense_Mutation	19	41675922	G	A	38	61
BRCA	TCGA-A8-A07W	PSG3	SNP	Missense_Mutation	19	43242928	C	A	28	47
BRCA	TCGA-A8-A07W	ZNF28	SNP	Silent	19	53303907	A	G	12	48
BRCA	TCGA-A8-A07W	CERS4	SNP	Missense_Mutation	19	8316117	C	T	27	61
BRCA	TCGA-A8-A07W	NXPH2	SNP	Missense_Mutation	2	139429217	C	T	30	54
BRCA	TCGA-A8-A07W	KIAA1715	SNP	Missense_Mutation	2	176829238	G	C	46	66
BRCA	TCGA-A8-A07W	TFPI	SNP	Splice_Site	2	188331770	C	G	24	66
BRCA	TCGA-A8-A07W	PUM2	SNP	Missense_Mutation	2	20508328	C	T	19	89
BRCA	TCGA-A8-A07W	FASTKD2	SNP	Missense_Mutation	2	207636961	G	C	33	88
BRCA	TCGA-A8-A07W	DPYSL5	SNP	Missense_Mutation	2	27164906	G	A	38	99
BRCA	TCGA-A8-A07W	SLC3A1	SNP	Missense_Mutation	2	44528257	G	A	42	95
BRCA	TCGA-A8-A07W	CLEC4F	SNP	Missense_Mutation	2	71036922	C	A	26	61
BRCA	TCGA-A8-A07W	TGM6	SNP	Missense_Mutation	20	2384311	C	T	27	81
BRCA	TCGA-A8-A07W	HAO1	SNP	Missense_Mutation	20	7920978	G	C	46	90
BRCA	TCGA-A8-A07W	LOC100128009	SNP	Silent	22	17414867	G	T	41	51
BRCA	TCGA-A8-A07W	MID1	SNP	Missense_Mutation	23	10535323	C	T	28	99
BRCA	TCGA-A8-A07W	ENOX2	SNP	Missense_Mutation	23	129804095	C	A	32	89
BRCA	TCGA-A8-A07W	SPRY3	SNP	Nonsense_Mutation	23	155004151	T	A	59	51
BRCA	TCGA-A8-A07W	NLGN4X	SNP	Missense_Mutation	23	5821686	C	T	31	91
BRCA	TCGA-A8-A07W	NHSL2	SNP	Missense_Mutation	23	71360543	G	A	39	25
BRCA	TCGA-A8-A07W	CD96	SNP	Splice_Site	3	111304168	A	T	3	60
BRCA	TCGA-A8-A07W	ROPN1B	SNP	Silent	3	125690996	C	T	29	52
BRCA	TCGA-A8-A07W	ROPN1B	SNP	Missense_Mutation	3	125694476	A	T	13	64
BRCA	TCGA-A8-A07W	CLSTN2	SNP	Silent	3	140178508	G	A	33	57
BRCA	TCGA-A8-A07W	P2RY1	SNP	Silent	3	152554273	G	C	47	57
BRCA	TCGA-A8-A07W	PLCH1	SNP	Missense_Mutation	3	155199955	G	C	42	56
BRCA	TCGA-A8-A07W	TBC1D5	SNP	Missense_Mutation	3	17202622	G	T	35	60
BRCA	TCGA-A8-A07W	MCF2L2	SNP	Missense_Mutation	3	182923992	A	T	3	68
BRCA	TCGA-A8-A07W	ECE2	SNP	Missense_Mutation	3	183995195	G	A	38	86
BRCA	TCGA-A8-A07W	ZNF662	SNP	Missense_Mutation	3	42956359	G	A	40	49
BRCA	TCGA-A8-A07W	STX19	SNP	Missense_Mutation	3	93733777	C	G	20	52
BRCA	TCGA-A8-A07W	SMARCA5	SNP	Missense_Mutation	4	144460080	C	A	32	100
BRCA	TCGA-A8-A07W	KCNIP1	SNP	Splice_Site	5	170149715	A	C	7	89
BRCA	TCGA-A8-A07W	C6	SNP	Missense_Mutation	5	41201759	C	G	28	50
BRCA	TCGA-A8-A07W	GLRX	SNP	Missense_Mutation	5	95152314	A	G	4	65
BRCA	TCGA-A8-A07W	ZBTB24	SNP	Missense_Mutation	6	109803035	C	G	17	82
BRCA	TCGA-A8-A07W	NEDD9	SNP	Missense_Mutation	6	11191170	C	T	26	56
BRCA	TCGA-A8-A07W	SLC17A5	SNP	Silent	6	74331662	C	T	19	36
BRCA	TCGA-A8-A07W	CD109	SNP	Missense_Mutation	6	74519742	C	G	20	68
BRCA	TCGA-A8-A07W	PM20D2	SNP	Missense_Mutation	6	89871591	C	G	17	55
BRCA	TCGA-A8-A07W	TMEM106B	SNP	Missense_Mutation	7	12269421	T	G	61	53
BRCA	TCGA-A8-A07W	EXT1	DEL	Frame_Shift_Del	8	119122327	T	-	54	92
BRCA	TCGA-A8-A07W	EXT1	DEL	In_Frame_Del	8	119122329	ATACTCGGT	-	8	55
BRCA	TCGA-A8-A07W	NCBP1	SNP	Missense_Mutation	9	100418351	C	G	32	63
BRCA	TCGA-A8-A07W	SVEP1	SNP	Missense_Mutation	9	113245928	A	G	10	76
BRCA	TCGA-A8-A07W	PAPPA	SNP	Silent	9	119106918	C	T	22	62
BRCA	TCGA-A8-A07W	TYRP1	SNP	Missense_Mutation	9	12695736	G	C	44	48
BRCA	TCGA-A8-A07W	CNTLN	SNP	Missense_Mutation	9	17502601	A	G	1	58
BRCA	TCGA-A8-A07W	MELK	SNP	Silent	9	36665550	G	A	38	48
BRCA	TCGA-A8-A07Z	HPS1	SNP	Missense_Mutation	10	100185607	A	G	6	88
BRCA	TCGA-A8-A07Z	DDX47	SNP	Silent	12	12974215	A	G	6	26
BRCA	TCGA-A8-A07Z	ACSS3	SNP	Silent	12	81503342	T	C	63	66
BRCA	TCGA-A8-A07Z	EEA1	SNP	Silent	12	93195436	C	T	32	51
BRCA	TCGA-A8-A07Z	ZFYVE26	SNP	Missense_Mutation	14	68236344	A	C	6	93
BRCA	TCGA-A8-A07Z	ATG2B	SNP	Missense_Mutation	14	96783628	T	A	58	77
BRCA	TCGA-A8-A07Z	APBA2	DEL	Frame_Shift_Del	15	29397755	CA	-	25	73
BRCA	TCGA-A8-A07Z	FGF7	SNP	Translation_Start_Site	15	49716270	C	T	19	71
BRCA	TCGA-A8-A07Z	CA5A	SNP	Silent	16	87921771	C	T	19	23
BRCA	TCGA-A8-A07Z	MAP2K4	SNP	Nonsense_Mutation	17	11998993	T	A	51	59
BRCA	TCGA-A8-A07Z	FLII	SNP	Missense_Mutation	17	18158120	C	G	27	69
BRCA	TCGA-A8-A07Z	MEX3C	SNP	Missense_Mutation	18	48703431	C	T	25	83
BRCA	TCGA-A8-A07Z	PDE1A	SNP	Missense_Mutation	2	183099185	G	A	41	83
BRCA	TCGA-A8-A07Z	IL1RAPL1	SNP	Silent	23	29935618	G	A	44	49
BRCA	TCGA-A8-A07Z	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A07Z	CHRD	SNP	Missense_Mutation	3	184102997	C	T	27	62
BRCA	TCGA-A8-A07Z	SLC4A4	SNP	Missense_Mutation	4	72121014	C	A	25	96
BRCA	TCGA-A8-A07Z	PCDHB16	SNP	Missense_Mutation	5	140564268	C	T	27	48
BRCA	TCGA-A8-A07Z	SLC22A2	DEL	Frame_Shift_Del	6	160671727	G	-	39	78
BRCA	TCGA-A8-A07Z	OR10C1	SNP	Silent	6	29408425	C	T	26	42
BRCA	TCGA-A8-A07Z	MLL3	DEL	Frame_Shift_Del	7	151849846	A	-	13	60
BRCA	TCGA-A8-A07Z	RSPH10B	SNP	Missense_Mutation	7	5992828	C	T	22	82
BRCA	TCGA-A8-A07Z	CIZ1	SNP	Nonsense_Mutation	9	130931780	G	A	38	52
BRCA	TCGA-A8-A07Z	FREM1	SNP	Missense_Mutation	9	14746441	G	A	42	52
BRCA	TCGA-A8-A081	HSD3B2	SNP	Missense_Mutation	1	119962135	C	G	30	45
BRCA	TCGA-A8-A081	TNFSF18	SNP	Missense_Mutation	1	173019924	A	C	3	73
BRCA	TCGA-A8-A081	PPFIA4	SNP	Silent	1	203024614	G	A	38	23
BRCA	TCGA-A8-A081	CAPN2	SNP	Missense_Mutation	1	223940644	G	A	46	100
BRCA	TCGA-A8-A081	CAPN2	SNP	Missense_Mutation	1	223959610	G	A	39	83
BRCA	TCGA-A8-A081	OR2L2	SNP	Missense_Mutation	1	248201688	G	T	41	61
BRCA	TCGA-A8-A081	DLGAP3	SNP	Silent	1	35350653	G	T	33	66
BRCA	TCGA-A8-A081	INPP5B	SNP	Missense_Mutation	1	38341331	G	C	35	62
BRCA	TCGA-A8-A081	OSBPL9	SNP	Nonsense_Mutation	1	52227565	C	T	25	84
BRCA	TCGA-A8-A081	PER3	SNP	Silent	1	7886604	G	A	39	24
BRCA	TCGA-A8-A081	HSD17B7P2	SNP	Missense_Mutation	10	38652500	G	A	41	71
BRCA	TCGA-A8-A081	HSD17B7P2	SNP	Silent	10	38652511	G	A	33	42
BRCA	TCGA-A8-A081	KAT6B	SNP	Missense_Mutation	10	76729488	C	G	31	55
BRCA	TCGA-A8-A081	MUC6	SNP	Silent	11	1027279	G	A	40	46
BRCA	TCGA-A8-A081	OR5D16	SNP	Missense_Mutation	11	55607005	C	G	24	54
BRCA	TCGA-A8-A081	PYGM	SNP	Missense_Mutation	11	64514134	G	C	33	60
BRCA	TCGA-A8-A081	CCDC87	SNP	Missense_Mutation	11	66358013	C	T	23	77
BRCA	TCGA-A8-A081	CYB5R2	SNP	Missense_Mutation	11	7687778	C	T	32	83
BRCA	TCGA-A8-A081	UTP20	SNP	Missense_Mutation	12	101750765	C	T	19	74
BRCA	TCGA-A8-A081	DNAH10	SNP	Missense_Mutation	12	124403277	C	T	27	67
BRCA	TCGA-A8-A081	PFKM	SNP	Missense_Mutation	12	48539040	C	T	27	79
BRCA	TCGA-A8-A081	USP15	INS	Frame_Shift_Ins	12	62777654	-	GATATCA	47	100
BRCA	TCGA-A8-A081	APOBEC1	SNP	Missense_Mutation	12	7805264	G	A	40	50
BRCA	TCGA-A8-A081	SLITRK6	SNP	Missense_Mutation	13	86369619	C	T	30	86
BRCA	TCGA-A8-A081	ISLR	SNP	Missense_Mutation	15	74467792	C	T	19	81
BRCA	TCGA-A8-A081	DNAAF1	SNP	Missense_Mutation	16	84208293	G	A	33	78
BRCA	TCGA-A8-A081	MYH1	SNP	Silent	17	10419370	G	C	45	86
BRCA	TCGA-A8-A081	USP22	SNP	Missense_Mutation	17	20908248	C	T	29	96
BRCA	TCGA-A8-A081	KRT19	INS	Frame_Shift_Ins	17	39681142	-	G	31	97
BRCA	TCGA-A8-A081	MRC2	SNP	Missense_Mutation	17	60742270	C	G	32	52
BRCA	TCGA-A8-A081	ERN1	SNP	Silent	17	62137922	C	T	19	37
BRCA	TCGA-A8-A081	LRRC37A3	SNP	Missense_Mutation	17	62856170	A	G	7	49
BRCA	TCGA-A8-A081	TP53	SNP	Missense_Mutation	17	7578508	C	T	25	82
BRCA	TCGA-A8-A081	DSG3	SNP	Missense_Mutation	18	29055687	G	A	33	74
BRCA	TCGA-A8-A081	TTR	SNP	Silent	18	29178548	C	T	19	42
BRCA	TCGA-A8-A081	CD226	SNP	Missense_Mutation	18	67614147	T	C	51	47
BRCA	TCGA-A8-A081	SLC35E1	SNP	Silent	19	16678954	G	T	45	63
BRCA	TCGA-A8-A081	ZNF536	SNP	Missense_Mutation	19	31039300	T	G	64	90
BRCA	TCGA-A8-A081	CEP89	SNP	Missense_Mutation	19	33390801	C	T	32	74
BRCA	TCGA-A8-A081	ZNF235	SNP	Missense_Mutation	19	44792449	C	A	17	94
BRCA	TCGA-A8-A081	GRIN2D	SNP	Splice_Site	19	48945641	T	C	57	73
BRCA	TCGA-A8-A081	PTPRS	SNP	Missense_Mutation	19	5265033	T	C	64	73
BRCA	TCGA-A8-A081	ZNF600	SNP	Missense_Mutation	19	53270087	C	G	29	82
BRCA	TCGA-A8-A081	ZNF549	SNP	Missense_Mutation	19	58048854	G	C	33	45
BRCA	TCGA-A8-A081	SAP130	DEL	In_Frame_Del	2	128774072	GGT	-	35	85
BRCA	TCGA-A8-A081	SCN7A	SNP	Missense_Mutation	2	167304187	C	A	24	67
BRCA	TCGA-A8-A081	XIRP2	SNP	Missense_Mutation	2	168107195	C	A	18	50
BRCA	TCGA-A8-A081	XIRP2	SNP	Missense_Mutation	2	168114995	G	A	33	87
BRCA	TCGA-A8-A081	ITGA4	SNP	Missense_Mutation	2	182386929	A	G	4	63
BRCA	TCGA-A8-A081	ITGAV	SNP	Splice_Site	2	187520972	A	T	15	89
BRCA	TCGA-A8-A081	ITGAV	SNP	Silent	2	187521035	G	T	48	39
BRCA	TCGA-A8-A081	ITGAV	SNP	Missense_Mutation	2	187540353	T	G	63	70
BRCA	TCGA-A8-A081	SPHKAP	SNP	Missense_Mutation	2	228882135	C	G	20	56
BRCA	TCGA-A8-A081	BIRC6	SNP	Splice_Site	2	32836514	G	T	35	98
BRCA	TCGA-A8-A081	PRKD3	SNP	Missense_Mutation	2	37543649	G	C	43	71
BRCA	TCGA-A8-A081	SEMA4F	SNP	Missense_Mutation	2	74900921	G	A	38	48
BRCA	TCGA-A8-A081	CDC25B	SNP	Missense_Mutation	20	3785499	T	C	51	81
BRCA	TCGA-A8-A081	ZNF217	SNP	Missense_Mutation	20	52192376	C	G	28	59
BRCA	TCGA-A8-A081	SEC14L6	SNP	Missense_Mutation	22	30921438	C	T	23	56
BRCA	TCGA-A8-A081	NXF5	SNP	Missense_Mutation	23	101096037	C	T	32	62
BRCA	TCGA-A8-A081	NXF5	SNP	Missense_Mutation	23	101096477	C	G	29	63
BRCA	TCGA-A8-A081	GPRASP2	DNP	Nonsense_Mutation	23	101970846	TC	AA	62	52
BRCA	TCGA-A8-A081	FRMPD3	SNP	Missense_Mutation	23	106845785	G	C	42	74
BRCA	TCGA-A8-A081	UTP14A	SNP	Missense_Mutation	23	129058966	A	C	9	61
BRCA	TCGA-A8-A081	ATP11C	SNP	Missense_Mutation	23	138869362	C	G	32	50
BRCA	TCGA-A8-A081	GABRQ	SNP	Missense_Mutation	23	151815455	G	A	38	94
BRCA	TCGA-A8-A081	FAM47A	SNP	Missense_Mutation	23	34148844	G	C	39	65
BRCA	TCGA-A8-A081	PRICKLE3	SNP	Silent	23	49032244	C	T	23	39
BRCA	TCGA-A8-A081	ZC3H12B	SNP	Missense_Mutation	23	64708837	G	T	33	51
BRCA	TCGA-A8-A081	ERCC6L	SNP	Silent	23	71426034	A	T	11	50
BRCA	TCGA-A8-A081	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A081	FGF12	SNP	Missense_Mutation	3	192125874	C	T	23	95
BRCA	TCGA-A8-A081	CAMKV	SNP	Splice_Site	3	49899764	C	G	18	81
BRCA	TCGA-A8-A081	KIAA1109	SNP	Missense_Mutation	4	123249460	G	A	45	77
BRCA	TCGA-A8-A081	SORBS2	SNP	Missense_Mutation	4	186544917	C	G	29	100
BRCA	TCGA-A8-A081	PRDM8	SNP	Missense_Mutation	4	81123205	G	A	40	49
BRCA	TCGA-A8-A081	PRKG2	SNP	Missense_Mutation	4	82092908	T	C	49	59
BRCA	TCGA-A8-A081	PCDHB4	SNP	Silent	5	140502504	C	T	31	59
BRCA	TCGA-A8-A081	ARAP3	SNP	Missense_Mutation	5	141052170	C	T	23	92
BRCA	TCGA-A8-A081	GEMIN5	SNP	Silent	5	154306969	T	C	57	49
BRCA	TCGA-A8-A081	GPR6	SNP	Missense_Mutation	6	110301379	G	A	40	99
BRCA	TCGA-A8-A081	PHACTR1	SNP	Missense_Mutation	6	13053669	G	A	38	100
BRCA	TCGA-A8-A081	SGK1	SNP	Missense_Mutation	6	134495199	A	C	3	65
BRCA	TCGA-A8-A081	LPA	SNP	Missense_Mutation	6	161026093	G	T	46	49
BRCA	TCGA-A8-A081	ANKS1A	SNP	Missense_Mutation	6	35046420	G	A	38	67
BRCA	TCGA-A8-A081	BAI3	SNP	Missense_Mutation	6	69758178	G	T	33	96
BRCA	TCGA-A8-A081	MDN1	SNP	Missense_Mutation	6	90353899	T	C	58	93
BRCA	TCGA-A8-A081	TMEM209	SNP	Missense_Mutation	7	129832501	G	A	33	82
BRCA	TCGA-A8-A081	RBAK	SNP	Splice_Site	7	5024707	G	T	44	75
BRCA	TCGA-A8-A081	GTF2IRD2	SNP	Nonsense_Mutation	7	74237282	G	A	38	52
BRCA	TCGA-A8-A081	COL1A2	SNP	Missense_Mutation	7	94045763	G	A	44	100
BRCA	TCGA-A8-A081	CSMD3	SNP	Silent	8	113358357	G	A	46	55
BRCA	TCGA-A8-A081	DEFB4B	SNP	Missense_Mutation	8	7272523	G	C	44	50
BRCA	TCGA-A8-A081	ESRP1	SNP	Silent	8	95690588	G	T	40	15
BRCA	TCGA-A8-A081	NR4A3	SNP	Silent	9	102595691	C	T	30	52
BRCA	TCGA-A8-A081	TNC	SNP	Missense_Mutation	9	117838356	T	G	62	89
BRCA	TCGA-A8-A081	CACNA1B	SNP	Missense_Mutation	9	140846819	G	A	40	100
BRCA	TCGA-A8-A081	GLDC	SNP	Missense_Mutation	9	6588676	C	T	23	100
BRCA	TCGA-A8-A081	ZNF510	DEL	Frame_Shift_Del	9	99521488	TCTCCCCAGTGTGAGTTCTCTGATG	-	62	81
BRCA	TCGA-A8-A081	ZNF510	SNP	Silent	9	99521789	G	A	33	60
BRCA	TCGA-A8-A082	TRIM8	SNP	Missense_Mutation	10	104416743	G	T	43	65
BRCA	TCGA-A8-A082	C11orf63	SNP	Silent	11	122828073	G	A	38	52
BRCA	TCGA-A8-A082	OAS2	SNP	Missense_Mutation	12	113435383	C	T	19	71
BRCA	TCGA-A8-A082	EP400	SNP	Silent	12	132551471	C	T	31	30
BRCA	TCGA-A8-A082	PABPC3	SNP	Missense_Mutation	13	25670433	C	A	22	78
BRCA	TCGA-A8-A082	FOXA1	SNP	Missense_Mutation	14	38061240	G	A	41	92
BRCA	TCGA-A8-A082	VIPAS39	INS	Frame_Shift_Ins	14	77910639	-	TTGTC	36	99
BRCA	TCGA-A8-A082	MGA	SNP	Missense_Mutation	15	41988487	C	G	28	61
BRCA	TCGA-A8-A082	MRPL46	SNP	Missense_Mutation	15	89002851	T	G	58	66
BRCA	TCGA-A8-A082	PPL	SNP	Silent	16	4937211	G	A	47	55
BRCA	TCGA-A8-A082	TOX3	SNP	Nonsense_Mutation	16	52484429	G	T	44	52
BRCA	TCGA-A8-A082	BPTF	SNP	Splice_site	17	65925453	C	T	27	49
BRCA	TCGA-A8-A082	PDE11A	SNP	Missense_Mutation	2	178682608	C	T	29	86
BRCA	TCGA-A8-A082	AAK1	SNP	Splice_site	2	69741603	C	T	23	51
BRCA	TCGA-A8-A082	CPNE1	SNP	Nonsense_Mutation	20	34215310	G	T	44	53
BRCA	TCGA-A8-A082	MMP9	SNP	Missense_Mutation	20	44640290	G	A	38	54
BRCA	TCGA-A8-A082	CSNK1E	SNP	Missense_Mutation	22	38694842	G	T	44	66
BRCA	TCGA-A8-A082	CYP2D6	SNP	Silent	22	42525162	G	A	39	48
BRCA	TCGA-A8-A082	UTP14A	SNP	Silent	23	129059021	A	G	15	52
BRCA	TCGA-A8-A082	CLDN16	SNP	Silent	3	190122573	G	A	40	30
BRCA	TCGA-A8-A082	NAA11	SNP	Silent	4	80246828	C	T	27	46
BRCA	TCGA-A8-A082	MAP3K1	DEL	In_Frame_Del	5	56183243	AGAATT	-	3	59
BRCA	TCGA-A8-A082	MAP3K1	DEL	Frame_Shift_Del	5	56183311	A	-	10	56
BRCA	TCGA-A8-A082	ENPP3	SNP	Missense_Mutation	6	132054845	G	C	39	67
BRCA	TCGA-A8-A082	TBX18	SNP	Silent	6	85446535	C	T	23	26
BRCA	TCGA-A8-A082	CPA4	SNP	Nonsense_Mutation	7	129939179	C	T	25	56
BRCA	TCGA-A8-A082	SLC13A4	SNP	Missense_Mutation	7	135376383	G	A	39	64
BRCA	TCGA-A8-A082	C8orf80	SNP	Splice_Site	8	27903043	C	A	18	76
BRCA	TCGA-A8-A082	GDAP1	SNP	Missense_Mutation	8	75276279	G	A	38	96
BRCA	TCGA-A8-A082	COL27A1	SNP	Missense_Mutation	9	116930472	C	G	32	63
BRCA	TCGA-A8-A082	APTX	SNP	Missense_Mutation	9	33001567	C	A	30	55
BRCA	TCGA-A8-A083	PBXIP1	SNP	Missense_Mutation	1	154919991	G	C	42	52
BRCA	TCGA-A8-A083	C1orf101	SNP	Missense_Mutation	1	244735733	A	T	6	52
BRCA	TCGA-A8-A083	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-A8-A083	CASP1	SNP	Missense_Mutation	11	104897079	C	A	31	51
BRCA	TCGA-A8-A083	POLR1D	SNP	Missense_Mutation	13	28197146	C	T	32	71
BRCA	TCGA-A8-A083	WDR72	SNP	Missense_Mutation	15	53907944	T	C	52	64
BRCA	TCGA-A8-A083	DNAH9	SNP	Missense_Mutation	17	11865565	G	A	41	93
BRCA	TCGA-A8-A083	PSMB6	SNP	Missense_Mutation	17	4701319	A	G	16	64
BRCA	TCGA-A8-A083	LPO	SNP	Missense_Mutation	17	56326498	T	C	59	38
BRCA	TCGA-A8-A083	DOCK6	INS	Frame_Shift_Ins	19	11325233	-	CCAT	6	90
BRCA	TCGA-A8-A083	MUC16	SNP	Missense_Mutation	19	9063372	T	C	60	46
BRCA	TCGA-A8-A083	SCN7A	SNP	Missense_Mutation	2	167328839	A	C	14	90
BRCA	TCGA-A8-A083	NCL	SNP	Missense_Mutation	2	232326283	T	C	50	61
BRCA	TCGA-A8-A083	APOBEC3A	SNP	Missense_Mutation	22	39357438	G	A	38	50
BRCA	TCGA-A8-A083	DCAF12L2	SNP	Missense_Mutation	23	125298649	T	A	57	79
BRCA	TCGA-A8-A083	FAM122B	SNP	Missense_Mutation	23	133923290	C	T	24	73
BRCA	TCGA-A8-A083	SLC9A6	SNP	Missense_Mutation	23	135126695	A	T	9	73
BRCA	TCGA-A8-A083	SLITRK2	INS	Frame_Shift_Ins	23	144905128	-	T	32	58
BRCA	TCGA-A8-A083	MED12	SNP	Missense_Mutation	23	70340968	A	T	12	90
BRCA	TCGA-A8-A083	LPP	SNP	Missense_Mutation	3	188592262	C	G	24	69
BRCA	TCGA-A8-A083	DLG1	SNP	Missense_Mutation	3	196867092	T	G	60	89
BRCA	TCGA-A8-A083	LARS2	SNP	Missense_Mutation	3	45583431	G	T	48	68
BRCA	TCGA-A8-A083	CENPE	SNP	Missense_Mutation	4	104062041	C	A	32	48
BRCA	TCGA-A8-A083	PCDHA7	SNP	Missense_Mutation	5	140215913	G	T	44	60
BRCA	TCGA-A8-A083	GFM2	SNP	Missense_Mutation	5	74026192	A	G	16	89
BRCA	TCGA-A8-A083	STXBP5	SNP	Missense_Mutation	6	147684477	T	A	49	93
BRCA	TCGA-A8-A083	THBS2	SNP	Silent	6	169629670	C	T	32	52
BRCA	TCGA-A8-A083	C7orf31	SNP	Missense_Mutation	7	25176162	T	C	62	63
BRCA	TCGA-A8-A083	NOL6	SNP	Missense_Mutation	9	33464042	G	A	45	73
BRCA	TCGA-A8-A084	CRNN	SNP	Missense_Mutation	1	152382287	C	T	27	48
BRCA	TCGA-A8-A084	PAPPA2	SNP	Missense_Mutation	1	176738882	G	A	38	62
BRCA	TCGA-A8-A084	DLGAP3	SNP	Missense_Mutation	1	35332720	C	T	31	98
BRCA	TCGA-A8-A084	GRIK3	SNP	Nonsense_Mutation	1	37307537	C	A	30	85
BRCA	TCGA-A8-A084	BTF3L4	SNP	Missense_Mutation	1	52530605	G	A	45	88
BRCA	TCGA-A8-A084	GBF1	SNP	Splice_Site	10	104135342	G	A	44	95
BRCA	TCGA-A8-A084	FGFR2	SNP	Missense_Mutation	10	123258034	A	T	12	55
BRCA	TCGA-A8-A084	CRTAC1	SNP	Silent	10	99677378	G	A	40	46
BRCA	TCGA-A8-A084	DYNC2H1	INS	Frame_Shift_Ins	11	103270428	-	CGAT	2	51
BRCA	TCGA-A8-A084	NXPE1	SNP	Missense_Mutation	11	114393794	C	A	32	55
BRCA	TCGA-A8-A084	ESAM	SNP	Silent	11	124628269	G	A	45	55
BRCA	TCGA-A8-A084	OR52B2	SNP	Missense_Mutation	11	6190763	T	G	51	55
BRCA	TCGA-A8-A084	SSH1	SNP	Silent	12	109186215	C	T	30	52
BRCA	TCGA-A8-A084	TBX3	SNP	Missense_Mutation	12	115120672	G	A	36	100
BRCA	TCGA-A8-A084	PDE3A	SNP	Silent	12	20766493	C	T	23	32
BRCA	TCGA-A8-A084	YAF2	SNP	Missense_Mutation	12	42554570	C	T	32	98
BRCA	TCGA-A8-A084	KRT2	SNP	Missense_Mutation	12	53041976	T	A	54	89
BRCA	TCGA-A8-A084	GLIPR1L2	SNP	Missense_Mutation	12	75816731	G	A	37	49
BRCA	TCGA-A8-A084	ATP11A	SNP	Missense_Mutation	13	113516786	G	A	38	81
BRCA	TCGA-A8-A084	KLHL1	SNP	Missense_Mutation	13	70681654	G	C	47	82
BRCA	TCGA-A8-A084	ATG14	SNP	Missense_Mutation	14	55836555	C	T	32	100
BRCA	TCGA-A8-A084	ZFP36L1	SNP	Missense_Mutation	14	69256881	C	T	17	81
BRCA	TCGA-A8-A084	LOC100288919	SNP	Missense_Mutation	15	22319166	G	T	44	48
BRCA	TCGA-A8-A084	CASC5	SNP	Missense_Mutation	15	40917599	G	A	45	86
BRCA	TCGA-A8-A084	CCDC33	SNP	Missense_Mutation	15	74628287	G	A	41	51
BRCA	TCGA-A8-A084	ENSG00000205141	SNP	Silent	15	99799775	C	T	19	50
BRCA	TCGA-A8-A084	CLEC16A	SNP	Silent	16	11154764	C	T	30	63
BRCA	TCGA-A8-A084	CLEC19A	SNP	Missense_Mutation	16	19310039	A	G	12	61
BRCA	TCGA-A8-A084	DNAH3	SNP	Missense_Mutation	16	21156695	C	A	29	58
BRCA	TCGA-A8-A084	CLN3	SNP	Missense_Mutation	16	28493476	A	G	9	86
BRCA	TCGA-A8-A084	SALL1	SNP	Silent	16	51171179	T	A	59	52
BRCA	TCGA-A8-A084	TP53	INS	Splice_Site	17	7578175	-	CCTC	10	87
BRCA	TCGA-A8-A084	DSG3	SNP	Nonsense_Mutation	18	29054365	C	T	29	71
BRCA	TCGA-A8-A084	DOT1L	SNP	Missense_Mutation	19	2185865	A	G	9	85
BRCA	TCGA-A8-A084	ZNF99	SNP	Missense_Mutation	19	22941252	C	T	21	68
BRCA	TCGA-A8-A084	LIPE	SNP	Missense_Mutation	19	42906899	C	T	31	47
BRCA	TCGA-A8-A084	KLK2	SNP	Missense_Mutation	19	51379763	T	C	64	48
BRCA	TCGA-A8-A084	LILRA5	SNP	Silent	19	54818710	T	C	55	52
BRCA	TCGA-A8-A084	ACSBG2	SNP	Missense_Mutation	19	6147661	G	A	39	83
BRCA	TCGA-A8-A084	SLC9A2	SNP	Missense_Mutation	2	103300701	C	T	27	100
BRCA	TCGA-A8-A084	PTPN4	SNP	Missense_Mutation	2	120718455	G	A	33	87
BRCA	TCGA-A8-A084	COL3A1	SNP	Silent	2	189870102	C	T	19	56
BRCA	TCGA-A8-A084	XRN2	SNP	Nonsense_Mutation	20	21314348	G	T	41	100
BRCA	TCGA-A8-A084	SPO11	SNP	Missense_Mutation	20	55908329	T	C	52	82
BRCA	TCGA-A8-A084	MYT1	SNP	Missense_Mutation	20	62871685	G	A	37	100
BRCA	TCGA-A8-A084	TCF20	SNP	Missense_Mutation	22	42607000	G	A	38	69
BRCA	TCGA-A8-A084	SSX7	SNP	Missense_Mutation	23	52677374	C	T	31	45
BRCA	TCGA-A8-A084	ZXDA	SNP	Missense_Mutation	23	57935843	C	A	21	87
BRCA	TCGA-A8-A084	NCK1	SNP	Missense_Mutation	3	136667105	A	G	4	86
BRCA	TCGA-A8-A084	SLC9A9	SNP	Missense_Mutation	3	142985726	C	T	29	86
BRCA	TCGA-A8-A084	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-A8-A084	IGF2BP2	SNP	Missense_Mutation	3	185367245	A	C	16	63
BRCA	TCGA-A8-A084	ANK2	SNP	Missense_Mutation	4	114277716	G	C	47	53
BRCA	TCGA-A8-A084	TECRL	SNP	Nonsense_Mutation	4	65180391	T	A	53	67
BRCA	TCGA-A8-A084	CHSY3	SNP	Missense_Mutation	5	129243939	G	T	41	60
BRCA	TCGA-A8-A084	FAM13B	SNP	Missense_Mutation	5	137354686	G	A	41	99
BRCA	TCGA-A8-A084	PCDHA13	SNP	Missense_Mutation	5	140262514	G	A	37	60
BRCA	TCGA-A8-A084	TCOF1	SNP	Silent	5	149777996	G	A	33	57
BRCA	TCGA-A8-A084	CDH9	SNP	Splice_site	5	26881732	A	T	2	65
BRCA	TCGA-A8-A084	ERBB2IP	SNP	Silent	5	65370887	C	G	29	54
BRCA	TCGA-A8-A084	AKD1	DEL	Frame_Shift_Del	6	109815203	A	-	16	50
BRCA	TCGA-A8-A084	HLA-DRB1	SNP	Splice_Site	6	32552156	C	T	28	73
BRCA	TCGA-A8-A084	CADPS2	SNP	Missense_Mutation	7	122269330	C	G	23	100
BRCA	TCGA-A8-A084	CCZ1	SNP	Missense_Mutation	7	5942373	C	T	31	64
BRCA	TCGA-A8-A084	MPDZ	SNP	Missense_Mutation	9	13175790	C	G	29	95
BRCA	TCGA-A8-A084	MPDZ	SNP	Missense_Mutation	9	13176329	C	T	30	54
BRCA	TCGA-A8-A084	DAPK1	SNP	Nonsense_Mutation	9	90256921	C	G	29	89
BRCA	TCGA-A8-A085	PTPN22	SNP	Missense_Mutation	1	114372636	C	A	19	54
BRCA	TCGA-A8-A085	PRAMEF2	SNP	Missense_Mutation	1	12920065	C	T	24	56
BRCA	TCGA-A8-A085	LOC728989	SNP	Missense_Mutation	1	146491230	T	C	51	32
BRCA	TCGA-A8-A085	KPRP	SNP	Missense_Mutation	1	152733095	C	T	24	63
BRCA	TCGA-A8-A085	ARHGEF11	SNP	Missense_Mutation	1	156910022	A	T	11	73
BRCA	TCGA-A8-A085	OR6N1	SNP	Nonsense_Mutation	1	158735696	A	T	8	51
BRCA	TCGA-A8-A085	UBR4	SNP	Missense_Mutation	1	19497282	G	C	33	98
BRCA	TCGA-A8-A085	CAMSAP2	SNP	Missense_Mutation	1	200818319	G	T	46	77
BRCA	TCGA-A8-A085	TIMM17A	SNP	Translation_Start_Site	1	201924622	T	A	56	51
BRCA	TCGA-A8-A085	USH2A	SNP	Silent	1	215916652	C	T	21	61
BRCA	TCGA-A8-A085	TAF5L	SNP	Missense_Mutation	1	229750159	T	G	58	90
BRCA	TCGA-A8-A085	HEATR1	SNP	Silent	1	236749563	A	C	11	54
BRCA	TCGA-A8-A085	PABPC4	SNP	Missense_Mutation	1	40028055	C	G	30	100
BRCA	TCGA-A8-A085	PTPRF	SNP	Missense_Mutation	1	44085063	G	A	37	100
BRCA	TCGA-A8-A085	USP33	SNP	Missense_Mutation	1	78187538	G	C	33	70
BRCA	TCGA-A8-A085	C10orf82	SNP	Silent	10	118424328	C	T	24	56
BRCA	TCGA-A8-A085	STAM	SNP	Missense_Mutation	10	17737209	G	A	34	82
BRCA	TCGA-A8-A085	PANX3	SNP	Silent	11	124489690	G	A	45	59
BRCA	TCGA-A8-A085	TRPM5	SNP	Missense_Mutation	11	2433403	C	G	21	72
BRCA	TCGA-A8-A085	MADD	SNP	Missense_Mutation	11	47336775	G	T	41	96
BRCA	TCGA-A8-A085	PRPF19	SNP	Silent	11	60668156	C	A	23	31
BRCA	TCGA-A8-A085	SPTBN2	SNP	Missense_Mutation	11	66455032	C	G	32	73
BRCA	TCGA-A8-A085	MAP6	SNP	Silent	11	75298782	G	C	33	45
BRCA	TCGA-A8-A085	SCYL2	SNP	Missense_Mutation	12	100720449	A	G	12	92
BRCA	TCGA-A8-A085	GAS2L3	SNP	Missense_Mutation	12	101017635	G	C	44	45
BRCA	TCGA-A8-A085	DDX11	DEL	Frame_Shift_Del	12	31242378	GCAG	-	46	58
BRCA	TCGA-A8-A085	BRCA2	DEL	Frame_Shift_Del	13	32905149	AG	-	3	49
BRCA	TCGA-A8-A085	MYCBP2	SNP	Nonsense_Mutation	13	77862348	G	C	45	100
BRCA	TCGA-A8-A085	TEP1	SNP	Missense_Mutation	14	20872808	G	C	34	69
BRCA	TCGA-A8-A085	MYH7	SNP	Nonsense_Mutation	14	23884326	G	A	46	100
BRCA	TCGA-A8-A085	C14orf177	SNP	Missense_Mutation	14	99182541	G	C	33	50
BRCA	TCGA-A8-A085	RYR3	SNP	Missense_Mutation	15	33936689	T	C	58	90
BRCA	TCGA-A8-A085	MAP1A	SNP	Missense_Mutation	15	43814046	G	C	33	60
BRCA	TCGA-A8-A085	MYO1E	SNP	Missense_Mutation	15	59470680	C	A	26	99
BRCA	TCGA-A8-A085	ACAN	SNP	Silent	15	89417113	C	T	24	56
BRCA	TCGA-A8-A085	MMP25	SNP	Silent	16	3107152	C	A	27	38
BRCA	TCGA-A8-A085	USP7	SNP	Missense_Mutation	16	8988986	C	G	30	100
BRCA	TCGA-A8-A085	KSR1	SNP	Missense_Mutation	17	25909747	A	G	10	75
BRCA	TCGA-A8-A085	LIG3	SNP	Missense_Mutation	17	33323606	A	G	7	91
BRCA	TCGA-A8-A085	SGCA	SNP	Nonsense_Mutation	17	48252661	G	T	41	93
BRCA	TCGA-A8-A085	CHERP	SNP	Silent	19	16652820	G	A	43	52
BRCA	TCGA-A8-A085	CPAMD8	SNP	Silent	19	17014626	G	T	33	70
BRCA	TCGA-A8-A085	GRIN2D	SNP	Missense_Mutation	19	48917733	C	A	26	73
BRCA	TCGA-A8-A085	FAM171B	SNP	Splice_site	2	187616031	G	A	35	86
BRCA	TCGA-A8-A085	FN1	SNP	Missense_Mutation	2	216264037	C	G	24	59
BRCA	TCGA-A8-A085	TNS1	SNP	Missense_Mutation	2	218669195	C	A	26	70
BRCA	TCGA-A8-A085	COL4A4	SNP	Silent	2	227872737	C	T	29	49
BRCA	TCGA-A8-A085	ATG4B	SNP	Missense_Mutation	2	242610773	T	A	55	54
BRCA	TCGA-A8-A085	EML4	SNP	Missense_Mutation	2	42557268	A	T	11	62
BRCA	TCGA-A8-A085	ARID5A	SNP	Missense_Mutation	2	97217854	T	A	58	59
BRCA	TCGA-A8-A085	EIF5B	SNP	Missense_Mutation	2	99999274	G	C	45	100
BRCA	TCGA-A8-A085	KIAA1755	SNP	Silent	20	36869429	C	A	27	47
BRCA	TCGA-A8-A085	BPI	DEL	Frame_Shift_Del	20	36939032	CACAT	-	25	53
BRCA	TCGA-A8-A085	SALL4	SNP	Silent	20	50407393	C	T	28	62
BRCA	TCGA-A8-A085	TRAPPC10	SNP	Missense_Mutation	21	45483643	G	A	40	79
BRCA	TCGA-A8-A085	CACNA1I	SNP	Silent	22	40059831	C	T	31	18
BRCA	TCGA-A8-A085	BCORL1	SNP	Missense_Mutation	23	129148840	G	T	41	78
BRCA	TCGA-A8-A085	TKTL1	SNP	Missense_Mutation	23	153524215	G	T	47	80
BRCA	TCGA-A8-A085	SEMA5B	SNP	Missense_Mutation	3	122641206	G	T	42	67
BRCA	TCGA-A8-A085	KALRN	SNP	Silent	3	124223779	C	A	21	56
BRCA	TCGA-A8-A085	ZNF385D	SNP	Silent	3	21462907	C	T	28	62
BRCA	TCGA-A8-A085	NAT6	SNP	Silent	3	50334919	G	A	43	52
BRCA	TCGA-A8-A085	TET2	SNP	Silent	4	106155363	T	C	60	53
BRCA	TCGA-A8-A085	GBA3	SNP	Missense_Mutation	4	22820484	T	A	61	70
BRCA	TCGA-A8-A085	KIF4B	SNP	Missense_Mutation	5	154393807	A	G	11	64
BRCA	TCGA-A8-A085	HMMR	SNP	Splice_site	5	162905690	G	T	41	69
BRCA	TCGA-A8-A085	FGFR4	SNP	Missense_Mutation	5	176520707	G	A	46	96
BRCA	TCGA-A8-A085	TARS	SNP	Missense_Mutation	5	33455166	A	C	3	45
BRCA	TCGA-A8-A085	TNPO1	SNP	Missense_Mutation	5	72196887	G	C	36	85
BRCA	TCGA-A8-A085	SOBP	SNP	Missense_Mutation	6	107956522	G	T	42	93
BRCA	TCGA-A8-A085	ELOVL5	SNP	Missense_Mutation	6	53134010	C	G	22	97
BRCA	TCGA-A8-A085	KCNQ5	SNP	Missense_Mutation	6	73879506	A	C	1	47
BRCA	TCGA-A8-A085	CCNC	SNP	Missense_Mutation	6	99993065	C	G	20	68
BRCA	TCGA-A8-A085	ZAN	SNP	Missense_Mutation	7	100363155	A	C	6	59
BRCA	TCGA-A8-A085	POM121	DNP	Missense_Mutation	7	72412672	TC	CT	62	44
BRCA	TCGA-A8-A085	CDK14	SNP	Silent	7	90377007	C	T	21	54
BRCA	TCGA-A8-A085	PKHD1L1	SNP	Missense_Mutation	8	110503282	G	C	33	74
BRCA	TCGA-A8-A085	PIWIL2	DEL	Frame_Shift_Del	8	22173773	ATCGGGATGGATGTTT	-	12	72
BRCA	TCGA-A8-A085	SNAI2	DEL	Frame_Shift_Del	8	49832526	CAAGGTAATGTGTGGGT	-	17	97
BRCA	TCGA-A8-A085	OR13C2	SNP	Missense_Mutation	9	107367295	A	C	5	69
BRCA	TCGA-A8-A085	WDR5	SNP	Missense_Mutation	9	137005925	C	T	25	92
BRCA	TCGA-A8-A085	FREM1	SNP	Missense_Mutation	9	14801748	C	T	24	60
BRCA	TCGA-A8-A085	ACER2	SNP	Missense_Mutation	9	19423945	A	G	14	91
BRCA	TCGA-A8-A085	KIAA0020	SNP	Missense_Mutation	9	2824721	G	T	43	98
BRCA	TCGA-A8-A085	PRUNE2	SNP	Missense_Mutation	9	79324701	T	A	58	64
BRCA	TCGA-A8-A086	UBIAD1	SNP	Missense_Mutation	1	11333899	A	C	14	87
BRCA	TCGA-A8-A086	UBR4	SNP	Silent	1	19426948	C	T	27	32
BRCA	TCGA-A8-A086	SLC41A1	SNP	Missense_Mutation	1	205764571	G	A	39	81
BRCA	TCGA-A8-A086	DFFB	SNP	Missense_Mutation	1	3782540	G	A	42	57
BRCA	TCGA-A8-A086	TARBP2	DEL	Frame_Shift_Del	12	53899836	TG	-	55	34
BRCA	TCGA-A8-A086	PLXNC1	SNP	Missense_Mutation	12	94620410	C	T	27	78
BRCA	TCGA-A8-A086	NQO1	SNP	Missense_Mutation	16	69744912	G	C	41	51
BRCA	TCGA-A8-A086	POLR1B	SNP	Silent	2	113333168	C	T	21	62
BRCA	TCGA-A8-A086	UBASH3A	SNP	Missense_Mutation	21	43833311	C	T	19	70
BRCA	TCGA-A8-A086	SBF1	DEL	Frame_Shift_Del	22	50899119	T	-	54	74
BRCA	TCGA-A8-A086	SLC6A11	SNP	Missense_Mutation	3	10967723	C	T	27	100
BRCA	TCGA-A8-A086	TMCC1	SNP	Missense_Mutation	3	129546835	C	A	24	48
BRCA	TCGA-A8-A086	SH3TC1	SNP	Silent	4	8242514	G	A	38	33
BRCA	TCGA-A8-A086	WDR36	SNP	Silent	5	110462515	C	A	22	52
BRCA	TCGA-A8-A086	MAP3K1	DEL	Frame_Shift_Del	5	56177874	AG	-	7	46
BRCA	TCGA-A8-A086	LYSMD3	DEL	Frame_Shift_Del	5	89815283	CT	-	20	98
BRCA	TCGA-A8-A086	ATF6B	SNP	Silent	6	32088603	T	C	54	55
BRCA	TCGA-A8-A08A	PIP5K1A	DEL	Frame_Shift_Del	1	151204807	G	-	39	99
BRCA	TCGA-A8-A08A	RTKN2	SNP	Missense_Mutation	10	63964752	A	T	8	53
BRCA	TCGA-A8-A08A	FAM160A2	SNP	Missense_Mutation	11	6232932	C	T	23	69
BRCA	TCGA-A8-A08A	FMNL3	SNP	Missense_Mutation	12	50052270	G	A	43	72
BRCA	TCGA-A8-A08A	FOXA1	SNP	Missense_Mutation	14	38061222	T	A	60	85
BRCA	TCGA-A8-A08A	THBS1	INS	Frame_Shift_Ins	15	39883401	-	CA	30	100
BRCA	TCGA-A8-A08A	PLA2G4E	SNP	Silent	15	42284983	G	A	35	60
BRCA	TCGA-A8-A08A	HERC1	SNP	Missense_Mutation	15	63944671	C	T	19	80
BRCA	TCGA-A8-A08A	GTF3C1	SNP	Silent	16	27506805	G	A	36	79
BRCA	TCGA-A8-A08A	ABCA8	SNP	Missense_Mutation	17	66925817	C	A	18	52
BRCA	TCGA-A8-A08A	CTC1	SNP	Missense_Mutation	17	8141861	C	G	21	67
BRCA	TCGA-A8-A08A	FCHO1	DEL	In_Frame_Del	19	17881246	GTG	-	36	72
BRCA	TCGA-A8-A08A	ERBB4	SNP	Missense_Mutation	2	212248393	G	A	42	73
BRCA	TCGA-A8-A08A	ZNF142	SNP	Missense_Mutation	2	219514141	T	C	49	71
BRCA	TCGA-A8-A08A	VSIG1	SNP	Missense_Mutation	23	107320387	A	G	14	47
BRCA	TCGA-A8-A08A	UPF3B	SNP	Silent	23	118986832	G	A	39	45
BRCA	TCGA-A8-A08A	BMX	SNP	Nonsense_Mutation	23	15540601	C	T	25	54
BRCA	TCGA-A8-A08A	FAM123B	SNP	Missense_Mutation	23	63411447	G	A	37	59
BRCA	TCGA-A8-A08A	MED12	SNP	Missense_Mutation	23	70340011	C	T	22	94
BRCA	TCGA-A8-A08A	C4orf6	SNP	Silent	4	5528055	A	G	4	51
BRCA	TCGA-A8-A08A	UNC5C	SNP	Missense_Mutation	4	96141217	G	A	37	78
BRCA	TCGA-A8-A08A	FAT2	SNP	Silent	5	150948304	C	T	23	14
BRCA	TCGA-A8-A08A	TMEM161B	SNP	Missense_Mutation	5	87494931	C	A	18	99
BRCA	TCGA-A8-A08A	LPA	SNP	Missense_Mutation	6	161007564	G	A	40	44
BRCA	TCGA-A8-A08A	GTF2IRD1	SNP	Silent	7	73961494	G	A	39	36
BRCA	TCGA-A8-A08A	PSIP1	DEL	In_Frame_Del	9	15474030	CTT	-	24	82
BRCA	TCGA-A8-A08B	RC3H1	SNP	Missense_Mutation	1	173939653	C	T	30	88
BRCA	TCGA-A8-A08B	DISP1	SNP	Missense_Mutation	1	223177609	C	T	31	74
BRCA	TCGA-A8-A08B	VN1R5	SNP	Silent	1	247419739	C	G	32	52
BRCA	TCGA-A8-A08B	GBP6	SNP	Silent	1	89849788	G	A	33	57
BRCA	TCGA-A8-A08B	SH3PXD2A	SNP	Nonsense_Mutation	10	105363029	G	T	37	55
BRCA	TCGA-A8-A08B	DCHS1	SNP	Missense_Mutation	11	6645418	G	A	43	74
BRCA	TCGA-A8-A08B	OR10A3	SNP	Silent	11	7960264	G	A	39	51
BRCA	TCGA-A8-A08B	ACVR1B	SNP	Silent	12	52370172	C	T	31	50
BRCA	TCGA-A8-A08B	ZDHHC17	SNP	Missense_Mutation	12	77199150	G	A	39	99
BRCA	TCGA-A8-A08B	BRCA2	DEL	In_Frame_Del	13	32912296	TGT	-	55	55
BRCA	TCGA-A8-A08B	PTGDR	SNP	Silent	14	52741544	G	C	45	51
BRCA	TCGA-A8-A08B	HERC1	SNP	Missense_Mutation	15	63958635	G	A	35	100
BRCA	TCGA-A8-A08B	BNC1	SNP	Missense_Mutation	15	83932783	G	A	42	100
BRCA	TCGA-A8-A08B	TBC1D3B	SNP	Silent	17	34493597	C	T	32	51
BRCA	TCGA-A8-A08B	ACLY	SNP	Missense_Mutation	17	40070020	G	C	35	86
BRCA	TCGA-A8-A08B	ACLY	SNP	Nonsense_Mutation	17	40070051	G	A	47	100
BRCA	TCGA-A8-A08B	BCL6B	SNP	Missense_Mutation	17	6929853	G	T	41	59
BRCA	TCGA-A8-A08B	C17orf74	SNP	Missense_Mutation	17	7329044	T	G	63	68
BRCA	TCGA-A8-A08B	ALPK2	SNP	Missense_Mutation	18	56191061	A	C	7	83
BRCA	TCGA-A8-A08B	PPAN-P2RY11	SNP	Missense_Mutation	19	10224677	G	T	43	95
BRCA	TCGA-A8-A08B	IL27RA	SNP	Missense_Mutation	19	14143204	C	G	26	51
BRCA	TCGA-A8-A08B	ZSCAN5C	SNP	Silent	19	56720191	A	G	15	23
BRCA	TCGA-A8-A08B	FOXD4L1	SNP	Silent	2	114257943	A	G	7	50
BRCA	TCGA-A8-A08B	RAPGEF4	INS	Frame_Shift_Ins	2	173900899	-	G	55	90
BRCA	TCGA-A8-A08B	SPEG	SNP	Missense_Mutation	2	220354586	C	T	32	63
BRCA	TCGA-A8-A08B	ABCG8	SNP	Silent	2	44101595	C	T	17	57
BRCA	TCGA-A8-A08B	AHCY	SNP	Silent	20	32878392	G	A	45	52
BRCA	TCGA-A8-A08B	LRRC3	SNP	Silent	21	45877292	G	A	39	32
BRCA	TCGA-A8-A08B	AP1B1	SNP	Missense_Mutation	22	29727482	G	A	44	67
BRCA	TCGA-A8-A08B	FLNA	SNP	Missense_Mutation	23	153593204	C	T	31	78
BRCA	TCGA-A8-A08B	P2RY4	SNP	Missense_Mutation	23	69479051	G	A	37	51
BRCA	TCGA-A8-A08B	ZBBX	SNP	Splice_site	3	167000281	G	A	45	49
BRCA	TCGA-A8-A08B	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A8-A08B	FYCO1	SNP	Silent	3	46008081	C	T	29	60
BRCA	TCGA-A8-A08B	PFKFB4	SNP	Splice_site	3	48572945	C	T	23	57
BRCA	TCGA-A8-A08B	FLNB	SNP	Silent	3	58109209	G	A	39	24
BRCA	TCGA-A8-A08B	TRPC3	SNP	Silent	4	122853579	G	A	40	50
BRCA	TCGA-A8-A08B	GPR125	SNP	Missense_Mutation	4	22440036	T	A	60	90
BRCA	TCGA-A8-A08B	SEL1L3	SNP	Missense_Mutation	4	25848951	C	T	23	49
BRCA	TCGA-A8-A08B	UGT2B7	SNP	Silent	4	69973882	C	T	32	58
BRCA	TCGA-A8-A08B	PDZD2	SNP	Silent	5	32088972	T	C	49	49
BRCA	TCGA-A8-A08B	MED23	SNP	Nonsense_Mutation	6	131908938	G	A	37	84
BRCA	TCGA-A8-A08B	AKAP9	SNP	Silent	7	91652213	C	G	29	45
BRCA	TCGA-A8-A08B	COL14A1	SNP	Silent	8	121240977	A	G	5	35
BRCA	TCGA-A8-A08B	CSMD1	SNP	Silent	8	2910135	G	A	40	43
BRCA	TCGA-A8-A08F	VCAM1	SNP	Missense_Mutation	1	101200206	A	T	4	50
BRCA	TCGA-A8-A08F	SORT1	SNP	Silent	1	109878931	T	C	54	59
BRCA	TCGA-A8-A08F	INTS3	SNP	Silent	1	153735214	G	A	35	51
BRCA	TCGA-A8-A08F	TRIM46	DEL	Frame_Shift_Del	1	155150988	C	-	26	65
BRCA	TCGA-A8-A08F	SPTA1	SNP	Missense_Mutation	1	158624423	G	A	40	72
BRCA	TCGA-A8-A08F	SLAMF7	SNP	Missense_Mutation	1	160722907	C	G	22	49
BRCA	TCGA-A8-A08F	LY9	SNP	Missense_Mutation	1	160769678	T	C	56	58
BRCA	TCGA-A8-A08F	B4GALT3	INS	Frame_Shift_Ins	1	161144898	-	T	48	83
BRCA	TCGA-A8-A08F	ALDH9A1	SNP	Missense_Mutation	1	165652328	G	A	34	94
BRCA	TCGA-A8-A08F	PADI3	SNP	Missense_Mutation	1	17606863	C	T	18	73
BRCA	TCGA-A8-A08F	HMCN1	SNP	Missense_Mutation	1	185902893	T	A	57	89
BRCA	TCGA-A8-A08F	CFH	SNP	Missense_Mutation	1	196643085	A	T	13	45
BRCA	TCGA-A8-A08F	IPO9	SNP	Missense_Mutation	1	201822199	A	G	12	86
BRCA	TCGA-A8-A08F	USH2A	SNP	Missense_Mutation	1	215848460	C	A	24	77
BRCA	TCGA-A8-A08F	LIN9	SNP	Missense_Mutation	1	226474154	A	C	3	90
BRCA	TCGA-A8-A08F	AGT	SNP	Missense_Mutation	1	230846340	T	A	58	61
BRCA	TCGA-A8-A08F	DISC1	SNP	Missense_Mutation	1	232144788	A	C	7	53
BRCA	TCGA-A8-A08F	OR2G3	SNP	Missense_Mutation	1	247768952	G	T	40	40
BRCA	TCGA-A8-A08F	TRIM58	SNP	Missense_Mutation	1	248039569	T	G	64	42
BRCA	TCGA-A8-A08F	OR2T10	SNP	Silent	1	248756770	C	T	32	56
BRCA	TCGA-A8-A08F	FBXW4	SNP	Nonsense_Mutation	10	103427732	C	T	26	91
BRCA	TCGA-A8-A08F	PTPRE	SNP	Silent	10	129871639	G	A	42	45
BRCA	TCGA-A8-A08F	HNRNPF	DEL	Frame_Shift_Del	10	43882166	G	-	48	54
BRCA	TCGA-A8-A08F	HNRNPA3P1	SNP	Missense_Mutation	10	44285720	A	T	4	77
BRCA	TCGA-A8-A08F	ERCC6	SNP	Missense_Mutation	10	50679156	T	C	63	93
BRCA	TCGA-A8-A08F	PCDH15	SNP	Missense_Mutation	10	55582048	G	T	47	72
BRCA	TCGA-A8-A08F	SAMD8	SNP	Missense_Mutation	10	76928307	T	G	56	92
BRCA	TCGA-A8-A08F	NRG3	SNP	Missense_Mutation	10	84744963	G	C	43	70
BRCA	TCGA-A8-A08F	LRIT1	SNP	Missense_Mutation	10	85992189	T	C	59	56
BRCA	TCGA-A8-A08F	DRD2	SNP	Missense_Mutation	11	113295308	G	T	45	62
BRCA	TCGA-A8-A08F	TMEM132A	SNP	Missense_Mutation	11	60697989	G	A	44	82
BRCA	TCGA-A8-A08F	BEST1	SNP	Silent	11	61729922	C	A	21	61
BRCA	TCGA-A8-A08F	NRXN2	SNP	Missense_Mutation	11	64417968	G	C	39	68
BRCA	TCGA-A8-A08F	OR10A2	SNP	Missense_Mutation	11	6891464	A	C	3	50
BRCA	TCGA-A8-A08F	NLRP10	SNP	Silent	11	7982712	A	T	7	49
BRCA	TCGA-A8-A08F	C12orf71	SNP	Missense_Mutation	12	27234161	G	C	48	44
BRCA	TCGA-A8-A08F	OVCH1	SNP	Missense_Mutation	12	29629184	C	G	29	55
BRCA	TCGA-A8-A08F	OR6C6	SNP	Missense_Mutation	12	55688554	A	T	4	56
BRCA	TCGA-A8-A08F	DNAJC14	SNP	Missense_Mutation	12	56221251	A	G	7	63
BRCA	TCGA-A8-A08F	B4GALNT1	SNP	Silent	12	58022574	C	T	21	57
BRCA	TCGA-A8-A08F	VWF	SNP	Missense_Mutation	12	6125930	T	A	56	47
BRCA	TCGA-A8-A08F	SYT1	SNP	Silent	12	79842793	G	A	39	48
BRCA	TCGA-A8-A08F	FLT3	SNP	Missense_Mutation	13	28578204	C	A	24	49
BRCA	TCGA-A8-A08F	ADAM6	SNP	Splice_Site	14	106725835	G	A	36	40
BRCA	TCGA-A8-A08F	MYH6	SNP	Missense_Mutation	14	23873939	T	C	58	83
BRCA	TCGA-A8-A08F	NYNRIN	SNP	Missense_Mutation	14	24877941	A	T	2	52
BRCA	TCGA-A8-A08F	NRXN3	SNP	Missense_Mutation	14	79111656	G	T	47	58
BRCA	TCGA-A8-A08F	C15orf63	SNP	Silent	15	44093968	C	A	25	58
BRCA	TCGA-A8-A08F	FBN1	SNP	Missense_Mutation	15	48729188	C	A	21	100
BRCA	TCGA-A8-A08F	CEP152	SNP	Missense_Mutation	15	49054845	G	C	34	51
BRCA	TCGA-A8-A08F	ZNF280D	SNP	Silent	15	56959161	T	A	58	60
BRCA	TCGA-A8-A08F	CGNL1	DEL	Frame_Shift_Del	15	57730935	A	-	11	41
BRCA	TCGA-A8-A08F	TPM1	SNP	Missense_Mutation	15	63351850	G	C	46	100
BRCA	TCGA-A8-A08F	SV2B	SNP	Missense_Mutation	15	91809865	T	A	60	52
BRCA	TCGA-A8-A08F	SNX29	SNP	Missense_Mutation	16	12172727	A	C	11	61
BRCA	TCGA-A8-A08F	ZSCAN10	SNP	Missense_Mutation	16	3142213	C	A	25	49
BRCA	TCGA-A8-A08F	LONP2	SNP	Missense_Mutation	16	48290613	G	C	45	54
BRCA	TCGA-A8-A08F	LONP2	SNP	Missense_Mutation	16	48290627	G	C	37	81
BRCA	TCGA-A8-A08F	NF1	DEL	Frame_Shift_Del	17	29684294	TGGTAAAATATACCACAGATGAGTTTGA	-	55	73
BRCA	TCGA-A8-A08F	PNPO	SNP	Missense_Mutation	17	46022006	G	T	48	97
BRCA	TCGA-A8-A08F	PPM1D	SNP	Silent	17	58734121	G	C	45	49
BRCA	TCGA-A8-A08F	COG1	SNP	Missense_Mutation	17	71201755	C	A	24	75
BRCA	TCGA-A8-A08F	LAMA3	SNP	Missense_Mutation	18	21364028	G	A	45	74
BRCA	TCGA-A8-A08F	ALPK2	SNP	Missense_Mutation	18	56182234	T	C	62	90
BRCA	TCGA-A8-A08F	CDH20	SNP	Missense_Mutation	18	59195238	G	T	35	54
BRCA	TCGA-A8-A08F	EMR3	SNP	Missense_Mutation	19	14749046	G	A	48	52
BRCA	TCGA-A8-A08F	CYP4F22	SNP	Missense_Mutation	19	15662166	C	G	28	66
BRCA	TCGA-A8-A08F	GPATCH1	SNP	Silent	19	33602715	G	A	48	41
BRCA	TCGA-A8-A08F	SIGLEC11	SNP	Missense_Mutation	19	50463606	A	C	6	52
BRCA	TCGA-A8-A08F	KLK3	SNP	Missense_Mutation	19	51361847	G	A	46	73
BRCA	TCGA-A8-A08F	CEACAM18	SNP	Missense_Mutation	19	51986595	C	T	26	50
BRCA	TCGA-A8-A08F	ZNF534	SNP	Missense_Mutation	19	52942384	G	T	35	51
BRCA	TCGA-A8-A08F	ZNF470	SNP	Silent	19	57089279	G	A	38	45
BRCA	TCGA-A8-A08F	TTN	SNP	Missense_Mutation	2	179396767	G	A	39	67
BRCA	TCGA-A8-A08F	MAP2	SNP	Missense_Mutation	2	210559236	A	T	5	59
BRCA	TCGA-A8-A08F	CPS1	SNP	Missense_Mutation	2	211525277	C	A	29	70
BRCA	TCGA-A8-A08F	ASB18	SNP	Missense_Mutation	2	237150049	C	T	27	50
BRCA	TCGA-A8-A08F	ASXL2	SNP	Nonsense_Mutation	2	25967090	C	A	29	71
BRCA	TCGA-A8-A08F	REL	SNP	Silent	2	61145426	G	A	33	71
BRCA	TCGA-A8-A08F	APLF	SNP	Silent	2	68740326	A	T	15	57
BRCA	TCGA-A8-A08F	ADD2	SNP	Silent	2	70906010	C	T	23	25
BRCA	TCGA-A8-A08F	LRRTM1	SNP	Missense_Mutation	2	80530777	G	T	44	68
BRCA	TCGA-A8-A08F	RGPD2	SNP	Missense_Mutation	2	88082418	C	A	32	55
BRCA	TCGA-A8-A08F	ANKRD36C	SNP	Missense_Mutation	2	96521618	A	G	8	50
BRCA	TCGA-A8-A08F	PXMP4	SNP	Missense_Mutation	20	32302531	T	C	64	91
BRCA	TCGA-A8-A08F	GRAP2	SNP	Missense_Mutation	22	40366922	C	G	26	63
BRCA	TCGA-A8-A08F	ATP1B4	SNP	Splice_site	23	119513487	T	G	61	82
BRCA	TCGA-A8-A08F	GABRQ	SNP	Missense_Mutation	23	151815563	A	T	8	72
BRCA	TCGA-A8-A08F		SNP	Missense_Mutation	23	155252758	A	G	7	62
BRCA	TCGA-A8-A08F	MORC1	SNP	Missense_Mutation	3	108724000	A	C	10	53
BRCA	TCGA-A8-A08F	PLA1A	DEL	Frame_Shift_Del	3	119344029	CGAGGTTACCTTC	-	31	50
BRCA	TCGA-A8-A08F	TXNRD3NB	SNP	Silent	3	126291351	C	A	23	47
BRCA	TCGA-A8-A08F	FGD5	SNP	Silent	3	14861793	C	T	23	37
BRCA	TCGA-A8-A08F	SAMD7	SNP	Silent	3	169644854	T	C	53	42
BRCA	TCGA-A8-A08F	KLHL24	SNP	Missense_Mutation	3	183382765	A	G	12	79
BRCA	TCGA-A8-A08F	SCN10A	SNP	Silent	3	38753808	G	A	45	70
BRCA	TCGA-A8-A08F	ALS2CL	SNP	Missense_Mutation	3	46716125	T	C	57	83
BRCA	TCGA-A8-A08F	NBEAL2	SNP	Missense_Mutation	3	47041682	G	C	48	54
BRCA	TCGA-A8-A08F	RBM15B	SNP	Missense_Mutation	3	51431037	C	G	32	53
BRCA	TCGA-A8-A08F	FLNB	SNP	Missense_Mutation	3	58094278	C	T	30	77
BRCA	TCGA-A8-A08F	MINA	DEL	In_Frame_Del	3	97664033	CTACTTGAATTAAACATT	-	20	48
BRCA	TCGA-A8-A08F	ATP8A1	SNP	Splice_Site	4	42425633	C	T	17	83
BRCA	TCGA-A8-A08F	LNX1	SNP	Missense_Mutation	4	54364974	T	C	62	86
BRCA	TCGA-A8-A08F	USO1	SNP	Missense_Mutation	4	76731634	A	G	1	55
BRCA	TCGA-A8-A08F	PCDHA8	SNP	Nonsense_Mutation	5	140222344	C	T	27	45
BRCA	TCGA-A8-A08F	PCDHA11	SNP	Missense_Mutation	5	140248908	C	A	24	67
BRCA	TCGA-A8-A08F	PCDHB11	SNP	Missense_Mutation	5	140580947	A	G	6	42
BRCA	TCGA-A8-A08F	PCDHB11	SNP	Nonsense_Mutation	5	140581715	C	T	31	39
BRCA	TCGA-A8-A08F	PCDHGA12	SNP	Missense_Mutation	5	140812092	C	A	18	82
BRCA	TCGA-A8-A08F	FAM114A2	SNP	Missense_Mutation	5	153413878	C	A	20	57
BRCA	TCGA-A8-A08F	PPP1R2P3	SNP	Missense_Mutation	5	156277602	C	T	22	53
BRCA	TCGA-A8-A08F	ZNF454	SNP	Missense_Mutation	5	178392207	G	A	47	92
BRCA	TCGA-A8-A08F	CARD6	SNP	Silent	5	40854020	A	T	7	47
BRCA	TCGA-A8-A08F	HSPB3	SNP	Missense_Mutation	5	53751815	G	C	33	64
BRCA	TCGA-A8-A08F	HSPB3	SNP	Missense_Mutation	5	53751835	G	C	33	60
BRCA	TCGA-A8-A08F	CDC20B	SNP	Missense_Mutation	5	54442678	C	G	31	53
BRCA	TCGA-A8-A08F	KIAA0947	DEL	In_Frame_Del	5	5466609	AAA	-	13	83
BRCA	TCGA-A8-A08F	HSF2	DEL	Frame_Shift_Del	6	122741312	AGAAGAACCTGTTT	-	3	80
BRCA	TCGA-A8-A08F	OR12D3	SNP	Missense_Mutation	6	29342676	T	A	57	87
BRCA	TCGA-A8-A08F	LRFN2	SNP	Missense_Mutation	6	40400435	C	T	27	65
BRCA	TCGA-A8-A08F	SERPINE1	SNP	Missense_Mutation	7	100773837	T	C	62	69
BRCA	TCGA-A8-A08F	ELN	SNP	Missense_Mutation	7	73457331	G	A	48	46
BRCA	TCGA-A8-A08F	CCDC146	SNP	Missense_Mutation	7	76866317	G	C	36	65
BRCA	TCGA-A8-A08F	SAMD9L	SNP	Missense_Mutation	7	92763853	T	C	60	49
BRCA	TCGA-A8-A08F	FZD6	SNP	Missense_Mutation	8	104337129	G	C	33	49
BRCA	TCGA-A8-A08F	TG	SNP	Missense_Mutation	8	133919044	G	T	46	77
BRCA	TCGA-A8-A08F	CSMD1	SNP	Missense_Mutation	8	3046501	C	G	24	100
BRCA	TCGA-A8-A08F	THAP1	SNP	Missense_Mutation	8	42693459	T	C	59	34
BRCA	TCGA-A8-A08F	NECAB1	SNP	Missense_Mutation	8	91929817	G	A	48	95
BRCA	TCGA-A8-A08F	GARNL3	SNP	Splice_site	9	130111314	G	A	47	97
BRCA	TCGA-A8-A08F	ZMYND19	SNP	Missense_Mutation	9	140477613	T	C	54	85
BRCA	TCGA-A8-A08F	FREM1	SNP	Silent	9	14769772	G	A	39	54
BRCA	TCGA-A8-A08F	CNTNAP3	SNP	Silent	9	39100104	C	T	18	45
BRCA	TCGA-A8-A08F	KIAA1432	SNP	Missense_Mutation	9	5763843	C	T	28	99
BRCA	TCGA-A8-A08G	OR10R2	SNP	Missense_Mutation	1	158449837	T	C	58	51
BRCA	TCGA-A8-A08G	CENPF	SNP	Missense_Mutation	1	214813560	G	A	37	93
BRCA	TCGA-A8-A08G	TARBP1	SNP	Silent	1	234563083	C	T	23	51
BRCA	TCGA-A8-A08G	CHRM3	SNP	Missense_Mutation	1	240071679	C	T	23	58
BRCA	TCGA-A8-A08G	CCDC30	SNP	Nonsense_Mutation	1	43108213	G	T	41	60
BRCA	TCGA-A8-A08G	GATA3	INS	Frame_Shift_Ins	10	8115851	-	ATGTCCT	17	78
BRCA	TCGA-A8-A08G	PLCE1	SNP	Missense_Mutation	10	96014009	G	T	36	54
BRCA	TCGA-A8-A08G	SLC22A18	SNP	Splice_site	11	2946426	G	A	45	78
BRCA	TCGA-A8-A08G	MRPL11	SNP	Missense_Mutation	11	66204842	C	G	29	80
BRCA	TCGA-A8-A08G	PRICKLE1	SNP	Missense_Mutation	12	42859031	C	T	23	100
BRCA	TCGA-A8-A08G	ZDHHC17	SNP	Silent	12	77199202	C	T	17	65
BRCA	TCGA-A8-A08G	A2M	SNP	Nonsense_Mutation	12	9251298	G	A	38	50
BRCA	TCGA-A8-A08G	WBP4	SNP	Silent	13	41656885	A	G	16	47
BRCA	TCGA-A8-A08G	FRMD5	SNP	Missense_Mutation	15	44166630	G	T	41	96
BRCA	TCGA-A8-A08G	PRTG	SNP	Missense_Mutation	15	55972757	T	A	51	87
BRCA	TCGA-A8-A08G	AGBL1	SNP	Missense_Mutation	15	86822937	T	G	56	90
BRCA	TCGA-A8-A08G	SPECC1	SNP	Splice_Site	17	20156817	G	A	33	74
BRCA	TCGA-A8-A08G	HNF1B	SNP	Missense_Mutation	17	36091721	T	C	55	58
BRCA	TCGA-A8-A08G	RNF213	SNP	Silent	17	78320721	G	A	38	9
BRCA	TCGA-A8-A08G	RYR1	SNP	Missense_Mutation	19	39008172	C	T	27	67
BRCA	TCGA-A8-A08G	C19orf63	SNP	Missense_Mutation	19	50984220	T	C	56	86
BRCA	TCGA-A8-A08G	SIGLEC10	SNP	Nonsense_Mutation	19	51918504	C	A	24	73
BRCA	TCGA-A8-A08G	NLRP5	SNP	Missense_Mutation	19	56549506	G	T	36	25
BRCA	TCGA-A8-A08G	ZNF805	SNP	Missense_Mutation	19	57764473	A	G	14	51
BRCA	TCGA-A8-A08G	DHRS9	SNP	Missense_Mutation	2	169938396	G	A	43	78
BRCA	TCGA-A8-A08G	SPEG	SNP	Missense_Mutation	2	220354339	G	A	40	51
BRCA	TCGA-A8-A08G	IQCA1	SNP	Missense_Mutation	2	237374203	C	T	19	50
BRCA	TCGA-A8-A08G	NRXN1	SNP	Missense_Mutation	2	50149131	T	C	64	92
BRCA	TCGA-A8-A08G	SEMG1	SNP	Nonsense_Mutation	20	43837007	C	T	19	42
BRCA	TCGA-A8-A08G	BCAS1	SNP	Missense_Mutation	20	52645062	A	T	3	74
BRCA	TCGA-A8-A08G	TMEM45A	SNP	Missense_Mutation	3	100274101	A	T	16	37
BRCA	TCGA-A8-A08G	ZNF454	SNP	Missense_Mutation	5	178392799	A	G	9	85
BRCA	TCGA-A8-A08G	GRIK2	SNP	Missense_Mutation	6	102337592	G	C	45	100
BRCA	TCGA-A8-A08G	EPB41L2	SNP	Silent	6	131222182	G	A	37	50
BRCA	TCGA-A8-A08G	RBM24	SNP	Missense_Mutation	6	17292294	G	A	38	68
BRCA	TCGA-A8-A08G	SERPINB9	SNP	Missense_Mutation	6	2895662	C	A	30	54
BRCA	TCGA-A8-A08G	SERPINB9	SNP	Missense_Mutation	6	2895673	C	T	32	92
BRCA	TCGA-A8-A08G	DNAH8	SNP	Silent	6	38840839	C	T	31	48
BRCA	TCGA-A8-A08G	POLR1C	SNP	Silent	6	43488439	C	G	23	36
BRCA	TCGA-A8-A08G	SRRT	SNP	Silent	7	100482032	C	T	30	60
BRCA	TCGA-A8-A08G	KLHL7	SNP	Silent	7	23212573	T	G	55	55
BRCA	TCGA-A8-A08G	KCNB2	SNP	Missense_Mutation	8	73848282	G	A	38	56
BRCA	TCGA-A8-A08H	FAM63A	SNP	Missense_Mutation	1	150970104	A	T	7	54
BRCA	TCGA-A8-A08H	FAM63A	SNP	Silent	1	150970106	T	C	59	18
BRCA	TCGA-A8-A08H	FLG2	SNP	Silent	1	152325327	T	G	63	45
BRCA	TCGA-A8-A08H	CD5L	SNP	Nonsense_Mutation	1	157803094	C	T	26	73
BRCA	TCGA-A8-A08H	DDR2	SNP	Silent	1	162745571	C	T	29	69
BRCA	TCGA-A8-A08H	KIF26B	DEL	Frame_Shift_Del	1	245582913	G	-	35	51
BRCA	TCGA-A8-A08H	FAM167B	SNP	Missense_Mutation	1	32713099	C	T	32	68
BRCA	TCGA-A8-A08H	FGGY	SNP	Silent	1	60103948	G	A	33	74
BRCA	TCGA-A8-A08H	ZBTB48	DEL	Frame_Shift_Del	1	6649225	C	-	26	75
BRCA	TCGA-A8-A08H	IDI2	SNP	Missense_Mutation	10	1065651	C	T	30	87
BRCA	TCGA-A8-A08H	IDI2	SNP	Silent	10	1065658	C	T	29	48
BRCA	TCGA-A8-A08H	MKI67	SNP	Missense_Mutation	10	129914073	G	A	33	51
BRCA	TCGA-A8-A08H	DSCAML1	SNP	Missense_Mutation	11	117389208	C	T	29	96
BRCA	TCGA-A8-A08H	DSCAML1	SNP	Silent	11	117389218	C	T	21	79
BRCA	TCGA-A8-A08H	LRP4	SNP	Silent	11	46924401	G	A	46	55
BRCA	TCGA-A8-A08H	AHNAK	SNP	Missense_Mutation	11	62300799	C	T	29	50
BRCA	TCGA-A8-A08H	MYBPC1	SNP	Silent	12	102040637	G	A	33	58
BRCA	TCGA-A8-A08H	CUX2	SNP	Missense_Mutation	12	111746104	G	A	45	94
BRCA	TCGA-A8-A08H	CCDC62	SNP	Missense_Mutation	12	123270281	C	T	32	67
BRCA	TCGA-A8-A08H	CCDC62	SNP	Silent	12	123270283	C	T	29	67
BRCA	TCGA-A8-A08H	CCDC38	SNP	Silent	12	96292198	C	T	29	31
BRCA	TCGA-A8-A08H	CCDC38	SNP	Missense_Mutation	12	96292210	C	T	29	52
BRCA	TCGA-A8-A08H	TSC22D1	SNP	Missense_Mutation	13	45150014	G	A	39	73
BRCA	TCGA-A8-A08H	MYH7	SNP	Splice_site	14	23884206	G	A	47	100
BRCA	TCGA-A8-A08H	NFATC4	SNP	Missense_Mutation	14	24842944	G	A	45	94
BRCA	TCGA-A8-A08H	KIAA0586	SNP	Splice_site	14	59014649	G	A	45	60
BRCA	TCGA-A8-A08H	ZFYVE26	SNP	Missense_Mutation	14	68229469	C	T	30	71
BRCA	TCGA-A8-A08H	BAHD1	SNP	Missense_Mutation	15	40750982	G	A	45	65
BRCA	TCGA-A8-A08H	FBN1	SNP	Missense_Mutation	15	48936868	G	T	40	52
BRCA	TCGA-A8-A08H	ZNF592	SNP	Missense_Mutation	15	85334030	A	T	11	89
BRCA	TCGA-A8-A08H	MEFV	SNP	Missense_Mutation	16	3304386	G	C	42	49
BRCA	TCGA-A8-A08H	MEFV	DEL	Frame_Shift_Del	16	3304392	A	-	6	40
BRCA	TCGA-A8-A08H	ADCY9	INS	Frame_Shift_Ins	16	4164238	-	C	34	50
BRCA	TCGA-A8-A08H	SLC12A4	INS	Frame_Shift_Ins	16	67979728	-	CG	8	92
BRCA	TCGA-A8-A08H	RAI1	SNP	Missense_Mutation	17	17700386	C	T	21	61
BRCA	TCGA-A8-A08H	GRB7	SNP	Silent	17	37898918	G	A	43	52
BRCA	TCGA-A8-A08H	WNK4	SNP	Missense_Mutation	17	40939494	G	A	45	96
BRCA	TCGA-A8-A08H	WNK4	SNP	Silent	17	40939514	G	A	34	69
BRCA	TCGA-A8-A08H	WNK4	SNP	Missense_Mutation	17	40947892	G	C	43	63
BRCA	TCGA-A8-A08H	NMT1	SNP	Missense_Mutation	17	43163979	G	A	37	100
BRCA	TCGA-A8-A08H	SRP68	SNP	Missense_Mutation	17	74068439	G	A	37	59
BRCA	TCGA-A8-A08H	ARHGEF15	SNP	Missense_Mutation	17	8218509	C	T	31	68
BRCA	TCGA-A8-A08H	MAST1	SNP	Missense_Mutation	19	12979921	C	A	30	94
BRCA	TCGA-A8-A08H	TMEM59L	SNP	Missense_Mutation	19	18726815	C	G	24	49
BRCA	TCGA-A8-A08H	MLL4	SNP	Missense_Mutation	19	36216136	G	A	33	76
BRCA	TCGA-A8-A08H	GRWD1	SNP	Silent	19	48953638	G	A	38	50
BRCA	TCGA-A8-A08H	ZNRF4	SNP	Missense_Mutation	19	5455855	C	T	27	79
BRCA	TCGA-A8-A08H	KLF11	SNP	Silent	2	10192628	T	G	55	42
BRCA	TCGA-A8-A08H	COL4A4	SNP	Silent	2	227872899	G	A	43	39
BRCA	TCGA-A8-A08H	COL4A4	SNP	Missense_Mutation	2	227924177	G	A	45	75
BRCA	TCGA-A8-A08H	C20orf132	SNP	Silent	20	35749406	G	A	45	60
BRCA	TCGA-A8-A08H	C20orf132	SNP	Missense_Mutation	20	35749414	G	A	33	67
BRCA	TCGA-A8-A08H	TBC1D20	SNP	Missense_Mutation	20	422288	G	T	36	74
BRCA	TCGA-A8-A08H	MICAL3	SNP	Missense_Mutation	22	18384692	C	T	29	100
BRCA	TCGA-A8-A08H	MICAL3	SNP	Missense_Mutation	22	18384698	C	T	32	100
BRCA	TCGA-A8-A08H	ZNF74	SNP	Silent	22	20760628	G	A	33	58
BRCA	TCGA-A8-A08H	MCAT	SNP	Silent	22	43529376	C	T	27	31
BRCA	TCGA-A8-A08H	CD99L2	SNP	Splice_site	23	149937508	C	T	29	56
BRCA	TCGA-A8-A08H	SYTL5	DNP	Nonsense_Mutation	23	37985868	GG	AA	47	97
BRCA	TCGA-A8-A08H	MAGED2	SNP	Missense_Mutation	23	54841170	G	A	45	78
BRCA	TCGA-A8-A08H	SRPX2	DEL	Frame_Shift_Del	23	99921786	GG	-	39	96
BRCA	TCGA-A8-A08H	PARP14	SNP	Missense_Mutation	3	122420066	G	A	45	45
BRCA	TCGA-A8-A08H	C3orf20	SNP	Missense_Mutation	3	14724696	C	T	32	77
BRCA	TCGA-A8-A08H	RBM15B	SNP	Silent	3	51430439	C	T	32	66
BRCA	TCGA-A8-A08H	ZFYVE28	SNP	Missense_Mutation	4	2341340	T	A	54	84
BRCA	TCGA-A8-A08H	DMP1	SNP	Missense_Mutation	4	88583319	G	A	41	52
BRCA	TCGA-A8-A08H	APBB3	SNP	Silent	5	139938266	T	C	54	52
BRCA	TCGA-A8-A08H	FAT2	SNP	Silent	5	150930283	G	A	33	63
BRCA	TCGA-A8-A08H	FAT2	SNP	Silent	5	150930286	G	A	45	53
BRCA	TCGA-A8-A08H	MAP3K1	SNP	Silent	5	56178411	C	T	29	64
BRCA	TCGA-A8-A08H	ZDHHC11	SNP	Silent	5	837564	G	A	45	42
BRCA	TCGA-A8-A08H	SLC17A4	SNP	Missense_Mutation	6	25771198	C	T	24	42
BRCA	TCGA-A8-A08H	PIK3CG	SNP	Missense_Mutation	7	106508216	G	A	45	87
BRCA	TCGA-A8-A08H	ADCK2	SNP	Silent	7	140387032	G	A	45	43
BRCA	TCGA-A8-A08H	RNF5P1	SNP	Silent	8	38458656	C	T	23	35
BRCA	TCGA-A8-A08H	GOLGA2	SNP	Splice_site	9	131030701	G	A	45	51
BRCA	TCGA-A8-A08H	KIAA0649	SNP	Silent	9	138379113	G	A	48	39
BRCA	TCGA-A8-A08H	KIAA0649	SNP	Missense_Mutation	9	138379127	G	A	43	68
BRCA	TCGA-A8-A08I	MAGI3	SNP	Missense_Mutation	1	114191882	G	A	48	97
BRCA	TCGA-A8-A08I	SPTA1	SNP	Missense_Mutation	1	158636110	C	T	19	56
BRCA	TCGA-A8-A08I	ATP1A4	SNP	Missense_Mutation	1	160144375	G	A	40	60
BRCA	TCGA-A8-A08I	NHLRC2	SNP	Missense_Mutation	10	115661613	A	T	12	92
BRCA	TCGA-A8-A08I	PCDH15	SNP	Silent	10	55782835	G	T	45	49
BRCA	TCGA-A8-A08I	GUCY1A2	SNP	Missense_Mutation	11	106558322	C	A	18	95
BRCA	TCGA-A8-A08I	C11orf1	SNP	Missense_Mutation	11	111753281	G	A	45	62
BRCA	TCGA-A8-A08I	ZFPL1	SNP	Missense_Mutation	11	64855582	C	T	30	66
BRCA	TCGA-A8-A08I	IFT88	SNP	Silent	13	21172876	G	A	33	56
BRCA	TCGA-A8-A08I	MTUS2	SNP	Missense_Mutation	13	29600553	C	A	22	73
BRCA	TCGA-A8-A08I	USPL1	SNP	Silent	13	31195310	G	A	46	90
BRCA	TCGA-A8-A08I	GPC5	SNP	Silent	13	92408591	A	C	11	45
BRCA	TCGA-A8-A08I	TTC6	DEL	Frame_Shift_Del	14	38293013	TTTCTGGATGC	-	64	73
BRCA	TCGA-A8-A08I	NEK9	SNP	Silent	14	75584015	T	C	51	50
BRCA	TCGA-A8-A08I	FBN1	SNP	Silent	15	48719825	C	T	24	53
BRCA	TCGA-A8-A08I	TP53	SNP	Missense_Mutation	17	7578442	T	C	57	69
BRCA	TCGA-A8-A08I	WDR45L	DEL	In_Frame_Del	17	80585138	TCT	-	58	86
BRCA	TCGA-A8-A08I	MYO9B	DEL	Frame_Shift_Del	19	17313052	C	-	30	78
BRCA	TCGA-A8-A08I	RYR1	SNP	Missense_Mutation	19	38976819	C	G	28	70
BRCA	TCGA-A8-A08I	SCN2A	SNP	Missense_Mutation	2	166152440	G	A	33	74
BRCA	TCGA-A8-A08I	HECW2	SNP	Missense_Mutation	2	197081790	C	T	23	99
BRCA	TCGA-A8-A08I	C2CD2	SNP	Missense_Mutation	21	43321826	C	G	26	95
BRCA	TCGA-A8-A08I	SAGE1	SNP	Missense_Mutation	23	134991157	G	A	41	55
BRCA	TCGA-A8-A08I	HEPH	SNP	Missense_Mutation	23	65392232	G	A	39	94
BRCA	TCGA-A8-A08I	ABCC5	SNP	Silent	3	183685546	C	T	21	68
BRCA	TCGA-A8-A08I	SCN10A	SNP	Missense_Mutation	3	38739525	G	A	40	77
BRCA	TCGA-A8-A08I	FAM116A	SNP	Missense_Mutation	3	57616502	A	G	3	91
BRCA	TCGA-A8-A08I	KBTBD8	SNP	Missense_Mutation	3	67053690	C	T	31	100
BRCA	TCGA-A8-A08I	FILIP1L	SNP	Missense_Mutation	3	99569408	T	A	62	93
BRCA	TCGA-A8-A08I	TRMT10A	SNP	Missense_Mutation	4	100479258	C	T	28	87
BRCA	TCGA-A8-A08I	PCDHAC2	SNP	Silent	5	140346876	C	T	23	15
BRCA	TCGA-A8-A08I	CCDC170	SNP	Missense_Mutation	6	151859360	G	C	33	69
BRCA	TCGA-A8-A08I	HIST1H2AA	SNP	Missense_Mutation	6	25726475	A	G	11	81
BRCA	TCGA-A8-A08I	TNFRSF21	SNP	Missense_Mutation	6	47202423	C	A	18	100
BRCA	TCGA-A8-A08I	KCNH2	SNP	Missense_Mutation	7	150648151	G	A	37	92
BRCA	TCGA-A8-A08I	FAM154A	SNP	Missense_Mutation	9	18928791	C	A	26	51
BRCA	TCGA-A8-A08J	CLCN6	SNP	Missense_Mutation	1	11888625	C	G	17	84
BRCA	TCGA-A8-A08J	NME7	SNP	Missense_Mutation	1	169272390	A	C	3	65
BRCA	TCGA-A8-A08J	PHACTR4	SNP	Missense_Mutation	1	28802626	G	A	37	71
BRCA	TCGA-A8-A08J	GATA3	INS	Frame_Shift_Ins	10	8115926	-	C	38	43
BRCA	TCGA-A8-A08J	ACACB	SNP	Missense_Mutation	12	109637223	G	T	39	86
BRCA	TCGA-A8-A08J	ZC3H13	SNP	Missense_Mutation	13	46544025	C	T	32	75
BRCA	TCGA-A8-A08J	ERN2	SNP	Missense_Mutation	16	23713958	C	T	30	82
BRCA	TCGA-A8-A08J	ABCA8	SNP	Splice_Site	17	66872768	C	A	18	76
BRCA	TCGA-A8-A08J	SLC16A5	SNP	Silent	17	73100132	A	C	7	41
BRCA	TCGA-A8-A08J	NLGN2	SNP	Missense_Mutation	17	7318874	C	A	22	96
BRCA	TCGA-A8-A08J	S1PR4	SNP	Missense_Mutation	19	3179623	C	T	30	75
BRCA	TCGA-A8-A08J	RASGRP4	SNP	Missense_Mutation	19	38911748	G	A	39	69
BRCA	TCGA-A8-A08J	B9D2	SNP	Missense_Mutation	19	41863814	T	C	63	84
BRCA	TCGA-A8-A08J	CLASP1	SNP	Missense_Mutation	2	122122750	G	A	38	64
BRCA	TCGA-A8-A08J	KBTBD10	SNP	Missense_Mutation	2	170367168	G	A	45	96
BRCA	TCGA-A8-A08J	PNPT1	SNP	Missense_Mutation	2	55867766	C	T	31	80
BRCA	TCGA-A8-A08J	LBP	SNP	Missense_Mutation	20	36993284	A	G	8	51
BRCA	TCGA-A8-A08J	ARMCX5	SNP	Missense_Mutation	23	101858458	C	A	19	41
BRCA	TCGA-A8-A08J	EDEM1	SNP	Missense_Mutation	3	5252828	A	G	6	92
BRCA	TCGA-A8-A08J	LDB2	SNP	Missense_Mutation	4	16597474	C	T	19	96
BRCA	TCGA-A8-A08J	THAP9	INS	In_Frame_Ins	4	83826044	-	GCT	3	59
BRCA	TCGA-A8-A08J	TBC1D9B	SNP	Missense_Mutation	5	179305390	G	C	41	71
BRCA	TCGA-A8-A08J	SLC12A9	SNP	Missense_Mutation	7	100459398	C	A	29	96
BRCA	TCGA-A8-A08J	DLD	SNP	Missense_Mutation	7	107556063	A	C	5	73
BRCA	TCGA-A8-A08J	THSD7A	SNP	Missense_Mutation	7	11675946	C	G	22	62
BRCA	TCGA-A8-A08J	GTF2IRD2B	INS	Frame_Shift_Ins	7	74554778	-	T	48	46
BRCA	TCGA-A8-A08J	PAPPA	SNP	Silent	9	119139902	G	T	45	59
BRCA	TCGA-A8-A08J	ZNF658	SNP	Silent	9	40773310	C	T	32	64
BRCA	TCGA-A8-A08L	MYBPHL	SNP	Missense_Mutation	1	109839776	C	A	30	88
BRCA	TCGA-A8-A08L	ANKRD35	SNP	Missense_Mutation	1	145562092	G	C	33	59
BRCA	TCGA-A8-A08L	POLR3C	SNP	Missense_Mutation	1	145594157	C	A	28	94
BRCA	TCGA-A8-A08L	CHD1L	SNP	Missense_Mutation	1	146757043	C	T	27	65
BRCA	TCGA-A8-A08L	TARS2	SNP	Missense_Mutation	1	150471122	C	G	32	58
BRCA	TCGA-A8-A08L	S100A7A	SNP	Missense_Mutation	1	153391682	A	C	3	52
BRCA	TCGA-A8-A08L	NPR1	SNP	Missense_Mutation	1	153659779	G	T	43	88
BRCA	TCGA-A8-A08L	KIRREL	SNP	Missense_Mutation	1	158058209	C	T	24	95
BRCA	TCGA-A8-A08L	OR10X1	SNP	Silent	1	158548883	A	C	2	47
BRCA	TCGA-A8-A08L	ATP1A4	SNP	Splice_Site	1	160123015	G	T	44	92
BRCA	TCGA-A8-A08L	CASQ1	SNP	Missense_Mutation	1	160165757	C	G	18	79
BRCA	TCGA-A8-A08L	CD244	SNP	Missense_Mutation	1	160811287	G	T	33	75
BRCA	TCGA-A8-A08L	ATF6	SNP	Missense_Mutation	1	161789606	G	C	33	90
BRCA	TCGA-A8-A08L	HMCN1	SNP	Missense_Mutation	1	186024717	A	G	2	58
BRCA	TCGA-A8-A08L	TMCO4	SNP	Silent	1	20066416	G	A	45	55
BRCA	TCGA-A8-A08L	SYT2	SNP	Missense_Mutation	1	202571101	C	G	32	100
BRCA	TCGA-A8-A08L	CR2	SNP	Silent	1	207644373	C	G	32	58
BRCA	TCGA-A8-A08L	KCNK2	DEL	Frame_Shift_Del	1	215408280	C	-	26	100
BRCA	TCGA-A8-A08L	KCNK2	SNP	Silent	1	215408281	C	G	21	65
BRCA	TCGA-A8-A08L	TCEA3	SNP	Missense_Mutation	1	23743853	C	A	30	57
BRCA	TCGA-A8-A08L	RYR2	SNP	Missense_Mutation	1	237659960	C	T	32	78
BRCA	TCGA-A8-A08L	RYR2	SNP	Missense_Mutation	1	237777665	A	G	6	92
BRCA	TCGA-A8-A08L	RYR2	SNP	Missense_Mutation	1	237791164	T	C	52	91
BRCA	TCGA-A8-A08L	CHML	SNP	Silent	1	241797530	T	C	51	45
BRCA	TCGA-A8-A08L	OR2G3	SNP	Missense_Mutation	1	247769389	C	A	32	46
BRCA	TCGA-A8-A08L	GJB3	SNP	Missense_Mutation	1	35250839	C	T	23	85
BRCA	TCGA-A8-A08L	SLC6A9	SNP	Missense_Mutation	1	44463290	A	T	7	80
BRCA	TCGA-A8-A08L	FAM151A	SNP	Missense_Mutation	1	55075317	C	G	32	39
BRCA	TCGA-A8-A08L	DAB1	SNP	Missense_Mutation	1	57537961	G	T	47	100
BRCA	TCGA-A8-A08L	AK4	SNP	Missense_Mutation	1	65656509	G	A	45	67
BRCA	TCGA-A8-A08L	SLC44A5	SNP	Missense_Mutation	1	75862283	C	G	29	53
BRCA	TCGA-A8-A08L	CCBL2	SNP	Missense_Mutation	1	89430521	C	G	24	53
BRCA	TCGA-A8-A08L	RPAP2	SNP	Missense_Mutation	1	92789796	G	A	44	53
BRCA	TCGA-A8-A08L	C10orf120	SNP	Silent	10	124457369	T	C	61	46
BRCA	TCGA-A8-A08L	FAM21C	SNP	Missense_Mutation	10	46265023	G	A	45	68
BRCA	TCGA-A8-A08L	FAM208B	SNP	Missense_Mutation	10	5789922	C	G	32	55
BRCA	TCGA-A8-A08L	CYP2C18	SNP	Nonsense_Mutation	10	96443636	G	A	41	61
BRCA	TCGA-A8-A08L	SPTY2D1	SNP	Silent	11	18636180	G	T	45	42
BRCA	TCGA-A8-A08L	SLC5A12	SNP	Missense_Mutation	11	26743111	C	A	21	100
BRCA	TCGA-A8-A08L	ARHGAP1	SNP	Silent	11	46717591	G	A	34	72
BRCA	TCGA-A8-A08L	ZNF408	SNP	Silent	11	46722615	G	A	34	58
BRCA	TCGA-A8-A08L	OR4X2	SNP	Missense_Mutation	11	48267160	T	A	53	71
BRCA	TCGA-A8-A08L	OR5W2	SNP	Missense_Mutation	11	55681165	T	A	56	65
BRCA	TCGA-A8-A08L	SHANK2	SNP	Missense_Mutation	11	70331834	C	T	31	100
BRCA	TCGA-A8-A08L	TCP11L2	SNP	Missense_Mutation	12	106704987	C	G	30	90
BRCA	TCGA-A8-A08L	ATXN2	SNP	Missense_Mutation	12	111908004	C	T	32	97
BRCA	TCGA-A8-A08L	PRB2	SNP	Missense_Mutation	12	11546090	G	T	44	63
BRCA	TCGA-A8-A08L	GYS2	SNP	Silent	12	21733378	A	G	10	45
BRCA	TCGA-A8-A08L	C12orf4	DEL	Frame_Shift_Del	12	4627964	CTAA	-	32	93
BRCA	TCGA-A8-A08L	RARG	SNP	Missense_Mutation	12	53607384	C	T	22	85
BRCA	TCGA-A8-A08L	LRP1	SNP	Missense_Mutation	12	57573717	C	G	24	68
BRCA	TCGA-A8-A08L	AVIL	SNP	Missense_Mutation	12	58204166	C	G	32	98
BRCA	TCGA-A8-A08L	C12orf50	SNP	Nonsense_Mutation	12	88383052	G	C	45	67
BRCA	TCGA-A8-A08L	FAM155A	SNP	Silent	13	108518300	G	C	33	65
BRCA	TCGA-A8-A08L	PCID2	SNP	Missense_Mutation	13	113849401	C	G	31	96
BRCA	TCGA-A8-A08L	ATP12A	SNP	Missense_Mutation	13	25274963	C	T	18	65
BRCA	TCGA-A8-A08L	BRCA2	SNP	Splice_Site	13	32932067	G	A	44	96
BRCA	TCGA-A8-A08L	ELF1	INS	Frame_Shift_Ins	13	41533123	-	A	61	40
BRCA	TCGA-A8-A08L	IPO5	SNP	Missense_Mutation	13	98658447	G	A	37	100
BRCA	TCGA-A8-A08L	MYH7	SNP	Missense_Mutation	14	23897763	C	A	30	97
BRCA	TCGA-A8-A08L	ADCY4	SNP	Missense_Mutation	14	24793371	C	A	21	74
BRCA	TCGA-A8-A08L	RIPK3	SNP	Nonsense_Mutation	14	24808754	G	A	47	55
BRCA	TCGA-A8-A08L	ERO1L	SNP	Missense_Mutation	14	53150583	T	C	51	73
BRCA	TCGA-A8-A08L	PSMC6	SNP	Splice_site	14	53187699	C	T	19	99
BRCA	TCGA-A8-A08L	KTN1	SNP	Missense_Mutation	14	56085923	G	C	33	76
BRCA	TCGA-A8-A08L	POMT2	SNP	Missense_Mutation	14	77769225	G	C	45	71
BRCA	TCGA-A8-A08L	SERPINA1	SNP	Nonsense_Mutation	14	94849023	G	C	40	30
BRCA	TCGA-A8-A08L	CLMN	SNP	Silent	14	95677072	G	A	45	57
BRCA	TCGA-A8-A08L	ALDH1A3	SNP	Missense_Mutation	15	101447358	C	G	29	68
BRCA	TCGA-A8-A08L	HERC2	SNP	Missense_Mutation	15	28478454	C	A	18	96
BRCA	TCGA-A8-A08L	CILP	SNP	Missense_Mutation	15	65497689	C	G	32	75
BRCA	TCGA-A8-A08L	MYH11	SNP	Missense_Mutation	16	15854467	G	T	44	83
BRCA	TCGA-A8-A08L	NOMO2	SNP	Missense_Mutation	16	18549937	G	C	41	56
BRCA	TCGA-A8-A08L	GP2	SNP	Silent	16	20329728	C	G	30	51
BRCA	TCGA-A8-A08L	SRRM2	SNP	Missense_Mutation	16	2812610	C	G	32	86
BRCA	TCGA-A8-A08L	SRRM2	SNP	Missense_Mutation	16	2816258	G	C	33	85
BRCA	TCGA-A8-A08L	SRRM2	SNP	Missense_Mutation	16	2816377	A	C	2	63
BRCA	TCGA-A8-A08L	SPN	SNP	Missense_Mutation	16	29675524	G	C	41	58
BRCA	TCGA-A8-A08L	C16orf93	SNP	Missense_Mutation	16	30770365	A	T	15	45
BRCA	TCGA-A8-A08L	ZNF263	SNP	Missense_Mutation	16	3336096	G	C	35	55
BRCA	TCGA-A8-A08L	DOK4	SNP	Missense_Mutation	16	57507913	G	T	48	99
BRCA	TCGA-A8-A08L	NFAT5	SNP	Silent	16	69725789	A	T	8	43
BRCA	TCGA-A8-A08L	ZNF19	SNP	Missense_Mutation	16	71512160	G	A	47	47
BRCA	TCGA-A8-A08L	TERF2IP	SNP	Missense_Mutation	16	75690231	C	G	29	45
BRCA	TCGA-A8-A08L	GRIN2A	DEL	Frame_Shift_Del	16	9858140	TTTAAAG	-	64	48
BRCA	TCGA-A8-A08L	MYO15A	SNP	Splice_Site	17	18035765	A	T	7	91
BRCA	TCGA-A8-A08L	NLE1	SNP	Missense_Mutation	17	33463426	C	G	29	82
BRCA	TCGA-A8-A08L	ATP2A3	SNP	Silent	17	3846793	C	T	21	73
BRCA	TCGA-A8-A08L	KRTAP3-2	SNP	Missense_Mutation	17	39155853	A	T	3	74
BRCA	TCGA-A8-A08L	GPATCH8	SNP	Missense_Mutation	17	42478549	C	T	30	98
BRCA	TCGA-A8-A08L	KAT7	SNP	Missense_Mutation	17	47903439	C	T	31	75
BRCA	TCGA-A8-A08L	DGKE	SNP	Missense_Mutation	17	54926210	G	C	33	98
BRCA	TCGA-A8-A08L	C17orf47	SNP	Silent	17	56620129	C	T	29	47
BRCA	TCGA-A8-A08L	CACNG4	SNP	Missense_Mutation	17	65026915	C	A	22	77
BRCA	TCGA-A8-A08L	ABCA8	SNP	Missense_Mutation	17	66871764	C	T	22	92
BRCA	TCGA-A8-A08L	ZACN	SNP	Silent	17	74077791	C	T	24	58
BRCA	TCGA-A8-A08L	TYK2	SNP	Missense_Mutation	19	10475330	G	C	34	56
BRCA	TCGA-A8-A08L	ATG4D	SNP	Missense_Mutation	19	10655730	C	A	20	68
BRCA	TCGA-A8-A08L	ZNF440	SNP	Silent	19	11943461	A	G	2	51
BRCA	TCGA-A8-A08L	ZNF625	SNP	Silent	19	12256910	C	T	21	51
BRCA	TCGA-A8-A08L	OR10H1	SNP	Missense_Mutation	19	15918164	C	G	32	58
BRCA	TCGA-A8-A08L	CEACAM21	SNP	Nonsense_Mutation	19	42085717	C	T	29	45
BRCA	TCGA-A8-A08L	ZNF845	SNP	Missense_Mutation	19	53855591	G	C	45	52
BRCA	TCGA-A8-A08L	KIR3DL2	SNP	Missense_Mutation	19	55378001	G	A	41	60
BRCA	TCGA-A8-A08L	G6PC2	SNP	Missense_Mutation	2	169761050	G	T	48	84
BRCA	TCGA-A8-A08L	NEUROD1	SNP	Silent	2	182543042	G	A	44	59
BRCA	TCGA-A8-A08L	CALCRL	SNP	Splice_Site	2	188216646	C	A	18	75
BRCA	TCGA-A8-A08L	MPP4	SNP	Silent	2	202557736	C	T	29	65
BRCA	TCGA-A8-A08L	ALS2CR8	SNP	Missense_Mutation	2	203848276	G	C	33	79
BRCA	TCGA-A8-A08L	NBEAL1	SNP	Missense_Mutation	2	204009564	C	T	29	98
BRCA	TCGA-A8-A08L	PIKFYVE	SNP	Silent	2	209218801	C	T	30	67
BRCA	TCGA-A8-A08L	ARPC2	SNP	Missense_Mutation	2	219103560	G	A	41	100
BRCA	TCGA-A8-A08L	ITSN2	SNP	Missense_Mutation	2	24531579	C	A	21	83
BRCA	TCGA-A8-A08L	CCDC164	SNP	Missense_Mutation	2	26678039	A	C	7	39
BRCA	TCGA-A8-A08L	RSAD2	SNP	Silent	2	7027109	C	T	19	50
BRCA	TCGA-A8-A08L	TMEM127	SNP	Missense_Mutation	2	96919811	G	C	33	97
BRCA	TCGA-A8-A08L	NAA20	SNP	Missense_Mutation	20	20013817	G	C	45	82
BRCA	TCGA-A8-A08L	BPIFB1	SNP	Missense_Mutation	20	31876560	G	T	34	53
BRCA	TCGA-A8-A08L	PREX1	SNP	Missense_Mutation	20	47266010	G	A	33	58
BRCA	TCGA-A8-A08L	PLCB4	SNP	Missense_Mutation	20	9449256	C	T	32	99
BRCA	TCGA-A8-A08L	HSPA13	SNP	Missense_Mutation	21	15745987	C	G	20	85
BRCA	TCGA-A8-A08L	YBEY	SNP	Missense_Mutation	21	47707027	C	T	21	94
BRCA	TCGA-A8-A08L	GSTT1	SNP	Missense_Mutation	22	24384222	C	G	30	64
BRCA	TCGA-A8-A08L	ODZ1	SNP	Missense_Mutation	23	123785795	C	G	21	62
BRCA	TCGA-A8-A08L	AFF2	DEL	Splice_Site	23	147967517	TTAGAAGAGC	-	60	58
BRCA	TCGA-A8-A08L	DMD	SNP	Missense_Mutation	23	32482764	T	C	56	73
BRCA	TCGA-A8-A08L	FOXR2	SNP	Missense_Mutation	23	55650719	G	T	35	62
BRCA	TCGA-A8-A08L	FOXO4	SNP	Missense_Mutation	23	70321379	G	A	45	52
BRCA	TCGA-A8-A08L	ATRX	SNP	Missense_Mutation	23	76938062	C	G	29	56
BRCA	TCGA-A8-A08L	CCDC80	SNP	Missense_Mutation	3	112357028	C	A	32	58
BRCA	TCGA-A8-A08L	TIMMDC1	SNP	Missense_Mutation	3	119232527	G	A	40	52
BRCA	TCGA-A8-A08L	PARP14	SNP	Silent	3	122418982	G	A	35	50
BRCA	TCGA-A8-A08L	CCDC14	SNP	Missense_Mutation	3	123634320	G	C	44	53
BRCA	TCGA-A8-A08L	SEC61A1	SNP	Missense_Mutation	3	127779472	C	G	25	100
BRCA	TCGA-A8-A08L	PLXND1	DEL	In_Frame_Del	3	129284243	CTCTGTGCG	-	20	76
BRCA	TCGA-A8-A08L	TRIM42	SNP	Missense_Mutation	3	140401484	G	C	33	48
BRCA	TCGA-A8-A08L	XRN1	SNP	Missense_Mutation	3	142139962	C	A	30	98
BRCA	TCGA-A8-A08L	SSR3	SNP	Silent	3	156260995	T	C	52	53
BRCA	TCGA-A8-A08L	RARRES1	SNP	Missense_Mutation	3	158422690	G	C	33	64
BRCA	TCGA-A8-A08L	TNFSF10	SNP	Silent	3	172241142	G	A	42	34
BRCA	TCGA-A8-A08L	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A08L	MFN1	SNP	Missense_Mutation	3	179066656	C	G	32	91
BRCA	TCGA-A8-A08L	ECE2	SNP	Missense_Mutation	3	184003335	G	T	36	72
BRCA	TCGA-A8-A08L	TFRC	SNP	Silent	3	195802199	G	A	45	50
BRCA	TCGA-A8-A08L	LRRN1	SNP	Missense_Mutation	3	3887067	G	C	45	87
BRCA	TCGA-A8-A08L	NME6	SNP	Missense_Mutation	3	48336135	G	C	44	71
BRCA	TCGA-A8-A08L	ADAMTS9	SNP	Nonsense_Mutation	3	64666906	G	C	45	70
BRCA	TCGA-A8-A08L	OR5H1	SNP	Missense_Mutation	3	97851818	T	C	50	62
BRCA	TCGA-A8-A08L	PDE5A	SNP	Missense_Mutation	4	120528318	G	T	48	87
BRCA	TCGA-A8-A08L	KIAA1109	SNP	Missense_Mutation	4	123234825	C	T	17	97
BRCA	TCGA-A8-A08L	SORBS2	SNP	Missense_Mutation	4	186578664	C	G	32	82
BRCA	TCGA-A8-A08L	NSG1	SNP	Silent	4	4411347	C	A	32	62
BRCA	TCGA-A8-A08L	ANKRD17	SNP	Missense_Mutation	4	74014637	A	G	4	92
BRCA	TCGA-A8-A08L	SEC31A	SNP	Missense_Mutation	4	83782814	G	T	42	59
BRCA	TCGA-A8-A08L	SLCO4C1	SNP	Missense_Mutation	5	101582963	T	C	49	62
BRCA	TCGA-A8-A08L	PCDHA4	SNP	Missense_Mutation	5	140187617	C	T	29	55
BRCA	TCGA-A8-A08L	SPINK5	SNP	Silent	5	147481391	T	C	64	39
BRCA	TCGA-A8-A08L	GABRP	SNP	Silent	5	170224476	G	A	37	18
BRCA	TCGA-A8-A08L	AHRR	SNP	Silent	5	413494	A	G	3	58
BRCA	TCGA-A8-A08L	C5orf28	SNP	Missense_Mutation	5	43446514	G	T	36	77
BRCA	TCGA-A8-A08L	GZMA	SNP	Splice_site	5	54403622	G	A	41	53
BRCA	TCGA-A8-A08L	SNX3	SNP	Missense_Mutation	6	108544177	T	G	56	79
BRCA	TCGA-A8-A08L	GPRC6A	SNP	Missense_Mutation	6	117130607	G	C	41	66
BRCA	TCGA-A8-A08L	FAM184A	SNP	Silent	6	119297156	G	T	40	55
BRCA	TCGA-A8-A08L	SOGA3	SNP	Nonsense_Mutation	6	127834113	C	A	29	100
BRCA	TCGA-A8-A08L	TAAR6	SNP	Missense_Mutation	6	132891576	T	G	64	74
BRCA	TCGA-A8-A08L	CITED2	SNP	Missense_Mutation	6	139694322	C	T	29	98
BRCA	TCGA-A8-A08L	TIAM2	SNP	Missense_Mutation	6	155450749	G	C	33	54
BRCA	TCGA-A8-A08L	OR12D3	SNP	Silent	6	29342374	T	G	55	53
BRCA	TCGA-A8-A08L	ATP6V1G2	SNP	Nonsense_Mutation	6	31513277	G	A	46	74
BRCA	TCGA-A8-A08L	TNXB	SNP	Silent	6	32021406	C	G	29	53
BRCA	TCGA-A8-A08L	ITPR3	SNP	Nonsense_Mutation	6	33663498	C	T	25	94
BRCA	TCGA-A8-A08L	PI16	SNP	Silent	6	36930982	C	A	30	52
BRCA	TCGA-A8-A08L	TREM2	SNP	Missense_Mutation	6	41126463	G	T	44	50
BRCA	TCGA-A8-A08L	TREML2	SNP	Missense_Mutation	6	41162428	T	G	59	51
BRCA	TCGA-A8-A08L	SLC35B2	SNP	Missense_Mutation	6	44222510	G	A	38	97
BRCA	TCGA-A8-A08L	MUC17	SNP	Splice_site	7	100692662	C	T	19	41
BRCA	TCGA-A8-A08L	RELN	SNP	Missense_Mutation	7	103236919	C	G	32	99
BRCA	TCGA-A8-A08L	KCND2	SNP	Missense_Mutation	7	119915782	G	A	40	100
BRCA	TCGA-A8-A08L	KIAA1549	SNP	Missense_Mutation	7	138583717	T	A	56	49
BRCA	TCGA-A8-A08L	TAS2R40	SNP	Missense_Mutation	7	142919307	G	C	45	53
BRCA	TCGA-A8-A08L	OR2A12	SNP	Silent	7	143793109	C	T	30	28
BRCA	TCGA-A8-A08L	NEUROD6	SNP	Missense_Mutation	7	31378755	A	G	3	69
BRCA	TCGA-A8-A08L	ANLN	SNP	Missense_Mutation	7	36465627	A	T	3	77
BRCA	TCGA-A8-A08L	STARD3NL	SNP	Missense_Mutation	7	38247149	G	C	34	79
BRCA	TCGA-A8-A08L	IGFBP3	SNP	Silent	7	45956971	C	T	27	37
BRCA	TCGA-A8-A08L	PKHD1L1	SNP	Missense_Mutation	8	110534984	G	T	34	47
BRCA	TCGA-A8-A08L	SYBU	SNP	Missense_Mutation	8	110587199	A	C	11	77
BRCA	TCGA-A8-A08L	MTBP	DEL	Frame_Shift_Del	8	121463507	GTTGAGTGTTTTGAAGAAGAAGACA	-	48	61
BRCA	TCGA-A8-A08L	EXTL3	SNP	Missense_Mutation	8	28575722	A	G	8	67
BRCA	TCGA-A8-A08L	CSMD1	SNP	Silent	8	3889446	G	A	41	58
BRCA	TCGA-A8-A08L	CSPP1	SNP	Missense_Mutation	8	68074106	C	G	21	69
BRCA	TCGA-A8-A08L	PREX2	SNP	Missense_Mutation	8	69129855	A	T	6	89
BRCA	TCGA-A8-A08L	GABBR2	SNP	Silent	9	101148012	G	T	41	68
BRCA	TCGA-A8-A08L	PALM2-AKAP2	SNP	Missense_Mutation	9	112899779	C	T	24	66
BRCA	TCGA-A8-A08L	DEC1	SNP	Splice_site	9	118164403	G	C	45	59
BRCA	TCGA-A8-A08L	C5	SNP	Silent	9	123777517	G	A	45	79
BRCA	TCGA-A8-A08L	CRAT	DEL	Splice_Site	9	131865291	CTTGTCAATCATGAC	-	20	97
BRCA	TCGA-A8-A08L	NUP214	SNP	Splice_Site	9	134108840	G	A	35	79
BRCA	TCGA-A8-A08L	TLN1	SNP	Nonsense_Mutation	9	35714848	G	C	45	97
BRCA	TCGA-A8-A08L	SLC1A1	SNP	Silent	9	4583113	G	A	45	57
BRCA	TCGA-A8-A08L	JAK2	SNP	Nonsense_Mutation	9	5044448	T	G	50	51
BRCA	TCGA-A8-A08L	APBA1	SNP	Missense_Mutation	9	72055953	C	G	32	100
BRCA	TCGA-A8-A08L	SMC5	SNP	Missense_Mutation	9	72893519	G	C	35	84
BRCA	TCGA-A8-A08L	RORB	SNP	Missense_Mutation	9	77275546	G	C	33	74
BRCA	TCGA-A8-A08L	BICD2	SNP	Missense_Mutation	9	95480926	C	A	24	50
BRCA	TCGA-A8-A08O	CELSR2	SNP	Missense_Mutation	1	109814973	A	C	6	84
BRCA	TCGA-A8-A08O	CD1D	SNP	Missense_Mutation	1	158151458	G	A	37	50
BRCA	TCGA-A8-A08O	PADI1	SNP	Silent	1	17567195	G	T	47	48
BRCA	TCGA-A8-A08O	C1orf116	SNP	Silent	1	207196236	A	G	11	38
BRCA	TCGA-A8-A08O	SPATA17	SNP	Silent	1	217975165	A	G	1	56
BRCA	TCGA-A8-A08O	TSSK3	SNP	Splice_Site	1	32828449	T	G	59	65
BRCA	TCGA-A8-A08O	LDB1	SNP	Missense_Mutation	10	103869779	A	G	14	65
BRCA	TCGA-A8-A08O	ELOVL3	SNP	Splice_Site	10	103986408	T	G	59	68
BRCA	TCGA-A8-A08O	DDX10	SNP	Splice_Site	11	108722938	T	G	57	74
BRCA	TCGA-A8-A08O	ROBO3	SNP	Missense_Mutation	11	124740064	G	A	40	85
BRCA	TCGA-A8-A08O	KIAA1549L	SNP	Missense_Mutation	11	33628300	A	C	6	54
BRCA	TCGA-A8-A08O	OR8K1	SNP	Silent	11	56114030	G	A	48	46
BRCA	TCGA-A8-A08O	INCENP	SNP	Silent	11	61898031	C	T	23	50
BRCA	TCGA-A8-A08O	ESRRA	SNP	Silent	11	64082580	C	T	28	62
BRCA	TCGA-A8-A08O	P2RX4	SNP	Missense_Mutation	12	121659957	A	C	6	54
BRCA	TCGA-A8-A08O	ATF7IP	SNP	Missense_Mutation	12	14631311	G	A	37	86
BRCA	TCGA-A8-A08O	MYL6	SNP	Missense_Mutation	12	56554049	A	C	3	66
BRCA	TCGA-A8-A08O	COL4A2	SNP	Silent	13	111111152	C	T	19	41
BRCA	TCGA-A8-A08O	PLEKHH1	SNP	Splice_Site	14	68042723	G	T	44	97
BRCA	TCGA-A8-A08O	TUBGCP4	SNP	Silent	15	43696712	T	C	49	54
BRCA	TCGA-A8-A08O	FUS	SNP	Missense_Mutation	16	31202420	G	C	33	66
BRCA	TCGA-A8-A08O	MYH3	SNP	Missense_Mutation	17	10552971	T	G	59	89
BRCA	TCGA-A8-A08O	SKAP1	SNP	Silent	17	46257608	G	A	33	70
BRCA	TCGA-A8-A08O	CSHL1	SNP	Missense_Mutation	17	61988207	C	T	19	54
BRCA	TCGA-A8-A08O	PRKAR1A	SNP	Missense_Mutation	17	66526534	G	T	33	88
BRCA	TCGA-A8-A08O	PRODH2	SNP	Silent	19	36293136	G	A	37	47
BRCA	TCGA-A8-A08O	APOB	SNP	Missense_Mutation	2	21234125	A	T	12	72
BRCA	TCGA-A8-A08O	ADA	SNP	Missense_Mutation	20	43249699	T	C	64	62
BRCA	TCGA-A8-A08O	CLCN4	SNP	Silent	23	10176393	C	T	24	54
BRCA	TCGA-A8-A08O	GDI1	SNP	Splice_site	23	153670141	G	A	35	93
BRCA	TCGA-A8-A08O	ZXDB	SNP	Missense_Mutation	23	57620090	A	G	9	80
BRCA	TCGA-A8-A08O	PIK3R4	DEL	In_Frame_Del	3	130463555	AACTGGCAAAAT	-	1	91
BRCA	TCGA-A8-A08O	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A08O	TRANK1	SNP	Missense_Mutation	3	36874921	G	C	45	58
BRCA	TCGA-A8-A08O	EGF	SNP	Missense_Mutation	4	110901145	G	A	34	77
BRCA	TCGA-A8-A08O	PPP2CA	SNP	Missense_Mutation	5	133537565	G	A	41	100
BRCA	TCGA-A8-A08O	HSP90AB1	DEL	Frame_Shift_Del	6	44217181	AAATTGACATCATCCCC	-	1	89
BRCA	TCGA-A8-A08O	PLXNA4	SNP	Silent	7	132193327	T	A	51	33
BRCA	TCGA-A8-A08O	TAF1L	SNP	Missense_Mutation	9	32633083	C	T	27	75
BRCA	TCGA-A8-A08P	SPRR2D	SNP	Missense_Mutation	1	153012797	T	C	56	67
BRCA	TCGA-A8-A08P	BTRC	SNP	Silent	10	103295203	G	C	45	57
BRCA	TCGA-A8-A08P	NXF1	SNP	Missense_Mutation	11	62562413	T	C	52	58
BRCA	TCGA-A8-A08P	SLCO1B3	SNP	Missense_Mutation	12	21030801	T	G	64	47
BRCA	TCGA-A8-A08P	ESYT1	SNP	Missense_Mutation	12	56527640	C	T	31	54
BRCA	TCGA-A8-A08P	BAZ2A	DEL	Frame_Shift_Del	12	56998028	T	-	56	90
BRCA	TCGA-A8-A08P	BAZ2A	SNP	Missense_Mutation	12	56998035	T	G	62	90
BRCA	TCGA-A8-A08P	C12orf50	SNP	Silent	12	88380150	C	T	29	62
BRCA	TCGA-A8-A08P	A2ML1	SNP	Missense_Mutation	12	8995779	G	A	40	47
BRCA	TCGA-A8-A08P	HTR2A	SNP	Splice_site	13	47408970	T	C	53	38
BRCA	TCGA-A8-A08P	MYH7	SNP	Silent	14	23885264	G	A	46	56
BRCA	TCGA-A8-A08P	PPP2R3C	SNP	Missense_Mutation	14	35577392	T	C	49	93
BRCA	TCGA-A8-A08P	GNB5	SNP	Missense_Mutation	15	52425633	G	A	38	84
BRCA	TCGA-A8-A08P	BTBD1	SNP	Silent	15	83710634	T	G	54	66
BRCA	TCGA-A8-A08P	KIF2B	SNP	Silent	17	51902195	T	C	52	26
BRCA	TCGA-A8-A08P	CEP95	SNP	Missense_Mutation	17	62517574	C	G	32	45
BRCA	TCGA-A8-A08P	TP53	DEL	Frame_Shift_Del	17	7578458	GGACGCG	-	39	63
BRCA	TCGA-A8-A08P	NDEL1	SNP	Silent	17	8354246	G	A	39	40
BRCA	TCGA-A8-A08P	FAM187B	SNP	Missense_Mutation	19	35715792	G	A	38	47
BRCA	TCGA-A8-A08P	RAB4B	SNP	Silent	19	41286351	T	A	59	52
BRCA	TCGA-A8-A08P	TRAK2	SNP	Missense_Mutation	2	202272210	C	G	32	79
BRCA	TCGA-A8-A08P	MGAT4A	SNP	Silent	2	99272904	G	A	34	48
BRCA	TCGA-A8-A08P	IDH3B	SNP	Missense_Mutation	20	2644642	A	T	11	50
BRCA	TCGA-A8-A08P	C20orf132	SNP	Missense_Mutation	20	35748218	C	G	32	58
BRCA	TCGA-A8-A08P	ZNF831	SNP	Nonsense_Mutation	20	57768844	C	T	29	52
BRCA	TCGA-A8-A08P	DOPEY2	SNP	Missense_Mutation	21	37605126	C	G	32	58
BRCA	TCGA-A8-A08P	DOPEY2	SNP	Missense_Mutation	21	37605200	C	G	32	59
BRCA	TCGA-A8-A08P	ACO2	SNP	Missense_Mutation	22	41921257	G	A	48	89
BRCA	TCGA-A8-A08P	ACPP	SNP	Missense_Mutation	3	132068766	G	T	48	78
BRCA	TCGA-A8-A08P	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A8-A08P	ACAP2	SNP	Nonsense_Mutation	3	195102673	G	A	37	78
BRCA	TCGA-A8-A08P	SCN10A	SNP	Missense_Mutation	3	38760181	G	C	44	97
BRCA	TCGA-A8-A08P	SH3BP2	SNP	Missense_Mutation	4	2822414	C	T	26	94
BRCA	TCGA-A8-A08P	ACSL6	SNP	Missense_Mutation	5	131325171	C	T	23	100
BRCA	TCGA-A8-A08P	GFRA3	SNP	Missense_Mutation	5	137599965	G	A	39	50
BRCA	TCGA-A8-A08P	BRIX1	SNP	Missense_Mutation	5	34924961	G	A	33	83
BRCA	TCGA-A8-A08P	C5orf42	SNP	Missense_Mutation	5	37179528	C	A	17	49
BRCA	TCGA-A8-A08P	ITPR3	SNP	Missense_Mutation	6	33639885	C	G	29	51
BRCA	TCGA-A8-A08P	RRAGD	SNP	Missense_Mutation	6	90088968	T	C	54	93
BRCA	TCGA-A8-A08P	MLL3	SNP	Nonsense_Mutation	7	151891576	C	A	32	98
BRCA	TCGA-A8-A08P	HOXA1	SNP	Missense_Mutation	7	27134950	G	A	39	57
BRCA	TCGA-A8-A08P	CYP3A7	SNP	Missense_Mutation	7	99314837	G	A	38	50
BRCA	TCGA-A8-A08P	WDR67	DEL	In_Frame_Del	8	124096492	CTT	-	20	98
BRCA	TCGA-A8-A08P	FAM91A1	SNP	Missense_Mutation	8	124798772	G	T	41	100
BRCA	TCGA-A8-A08P	SCARA3	SNP	Silent	8	27528481	C	T	27	47
BRCA	TCGA-A8-A08P	OR1K1	SNP	Missense_Mutation	9	125562550	T	C	50	73
BRCA	TCGA-A8-A08P	FREM1	SNP	Missense_Mutation	9	14859403	T	C	49	62
BRCA	TCGA-A8-A08R	PRPF38B	SNP	Missense_Mutation	1	109238761	C	G	32	100
BRCA	TCGA-A8-A08R	FNDC7	SNP	Missense_Mutation	1	109268596	C	T	30	99
BRCA	TCGA-A8-A08R	KCNA2	DEL	In_Frame_Del	1	111146353	GCCTCT	-	42	100
BRCA	TCGA-A8-A08R	RSBN1	SNP	Missense_Mutation	1	114340575	G	C	39	59
BRCA	TCGA-A8-A08R	TTF2	SNP	Missense_Mutation	1	117618186	G	C	41	51
BRCA	TCGA-A8-A08R	PRAMEF10	SNP	Missense_Mutation	1	12954759	C	G	32	47
BRCA	TCGA-A8-A08R	ADCY10	SNP	Nonsense_Mutation	1	167791335	G	A	47	52
BRCA	TCGA-A8-A08R	F5	SNP	Missense_Mutation	1	169510453	G	T	48	47
BRCA	TCGA-A8-A08R	CACNA1E	SNP	Splice_Site	1	181680207	T	C	57	90
BRCA	TCGA-A8-A08R	TP53BP2	SNP	Missense_Mutation	1	223989890	G	C	45	94
BRCA	TCGA-A8-A08R	WDR64	SNP	Nonsense_Mutation	1	241912926	G	T	37	82
BRCA	TCGA-A8-A08R	WDR64	SNP	Missense_Mutation	1	241953984	C	G	32	67
BRCA	TCGA-A8-A08R	FAM54B	SNP	Nonsense_Mutation	1	26153135	G	A	47	99
BRCA	TCGA-A8-A08R	KIAA0319L	SNP	Silent	1	35908580	T	C	60	47
BRCA	TCGA-A8-A08R	RNF220	SNP	Nonsense_Mutation	1	44877905	C	T	19	87
BRCA	TCGA-A8-A08R	ANKRD13C	SNP	Nonsense_Mutation	1	70781223	G	A	46	96
BRCA	TCGA-A8-A08R	ZRANB2	SNP	Missense_Mutation	1	71532605	C	A	18	60
BRCA	TCGA-A8-A08R	ELTD1	SNP	Missense_Mutation	1	79403558	C	G	28	57
BRCA	TCGA-A8-A08R	TTLL7	SNP	Splice_site	1	84356005	C	T	24	95
BRCA	TCGA-A8-A08R	EMX2	SNP	Missense_Mutation	10	119307628	A	G	11	91
BRCA	TCGA-A8-A08R	BAG3	DEL	Frame_Shift_Del	10	121429661	CC	-	26	59
BRCA	TCGA-A8-A08R	SGMS1	SNP	Missense_Mutation	10	52103376	G	A	42	66
BRCA	TCGA-A8-A08R	HERC4	DEL	Frame_Shift_Del	10	69793826	TGCA	-	63	77
BRCA	TCGA-A8-A08R	GRID1	SNP	Silent	10	87966206	T	G	59	8
BRCA	TCGA-A8-A08R	ZC3H12C	SNP	Missense_Mutation	11	110035764	C	T	22	63
BRCA	TCGA-A8-A08R	NCAM1	SNP	Splice_site	11	113103076	G	C	35	100
BRCA	TCGA-A8-A08R	POU2F3	SNP	Missense_Mutation	11	120173009	C	A	32	75
BRCA	TCGA-A8-A08R	NCAPD3	SNP	Splice_Site	11	134073802	C	G	32	92
BRCA	TCGA-A8-A08R	B3GAT1	SNP	Missense_Mutation	11	134253872	G	T	40	99
BRCA	TCGA-A8-A08R	NELL1	SNP	Missense_Mutation	11	20949974	C	T	22	62
BRCA	TCGA-A8-A08R	OR52M1	SNP	Nonsense_Mutation	11	4566606	C	A	20	62
BRCA	TCGA-A8-A08R	FAT3	SNP	Missense_Mutation	11	92534181	C	G	21	88
BRCA	TCGA-A8-A08R	KLRC1	DEL	Frame_Shift_Del	12	10600152	T	-	52	62
BRCA	TCGA-A8-A08R	TAS2R9	SNP	Missense_Mutation	12	10961953	A	T	11	54
BRCA	TCGA-A8-A08R	CUX2	SNP	Missense_Mutation	12	111785467	G	C	41	82
BRCA	TCGA-A8-A08R	CCDC60	SNP	Missense_Mutation	12	119943035	G	C	35	53
BRCA	TCGA-A8-A08R	CNTN1	SNP	Missense_Mutation	12	41337509	G	A	41	74
BRCA	TCGA-A8-A08R	RAD51AP1	SNP	Missense_Mutation	12	4653024	C	G	32	41
BRCA	TCGA-A8-A08R	SLC11A2	SNP	Missense_Mutation	12	51384687	G	C	41	53
BRCA	TCGA-A8-A08R	KRT79	SNP	Missense_Mutation	12	53218090	G	C	48	82
BRCA	TCGA-A8-A08R	RDH5	SNP	Silent	12	56118203	C	T	22	54
BRCA	TCGA-A8-A08R	PHLDA1	SNP	Missense_Mutation	12	76425062	C	A	22	95
BRCA	TCGA-A8-A08R	CCER1	SNP	Missense_Mutation	12	91347376	T	A	59	23
BRCA	TCGA-A8-A08R	NALCN	SNP	Missense_Mutation	13	101733990	A	C	8	90
BRCA	TCGA-A8-A08R	CCDC168	SNP	Missense_Mutation	13	103386074	T	G	50	51
BRCA	TCGA-A8-A08R	EDNRB	SNP	Silent	13	78474078	A	G	5	48
BRCA	TCGA-A8-A08R	MYH6	SNP	Silent	14	23862941	C	T	24	50
BRCA	TCGA-A8-A08R	PYGL	SNP	Missense_Mutation	14	51398410	T	G	56	77
BRCA	TCGA-A8-A08R	FLRT2	SNP	Silent	14	86088314	C	T	19	46
BRCA	TCGA-A8-A08R	DUOX1	SNP	Missense_Mutation	15	45437157	A	T	3	58
BRCA	TCGA-A8-A08R	FANCI	SNP	Missense_Mutation	15	89807217	T	C	49	90
BRCA	TCGA-A8-A08R	SMG1	SNP	Missense_Mutation	16	18846446	A	G	6	91
BRCA	TCGA-A8-A08R	ITGAX	SNP	Silent	16	31371718	C	T	17	50
BRCA	TCGA-A8-A08R	TRAP1	SNP	Missense_Mutation	16	3729754	G	C	41	92
BRCA	TCGA-A8-A08R	PHKB	SNP	Missense_Mutation	16	47683069	A	G	12	90
BRCA	TCGA-A8-A08R	CES1	SNP	Missense_Mutation	16	55857555	G	A	38	51
BRCA	TCGA-A8-A08R	CDH13	SNP	Silent	16	83378511	G	C	42	38
BRCA	TCGA-A8-A08R	NCOR1	SNP	Missense_Mutation	17	15938204	G	A	33	96
BRCA	TCGA-A8-A08R	CNTNAP1	SNP	Missense_Mutation	17	40840974	G	A	41	78
BRCA	TCGA-A8-A08R	ANKFY1	SNP	Missense_Mutation	17	4111293	G	A	48	99
BRCA	TCGA-A8-A08R	LRRC46	SNP	Silent	17	45909569	G	A	33	59
BRCA	TCGA-A8-A08R	SGCA	SNP	Silent	17	48247563	G	C	47	84
BRCA	TCGA-A8-A08R	ANKRD40	SNP	Missense_Mutation	17	48784939	A	C	6	84
BRCA	TCGA-A8-A08R	CEP95	SNP	Silent	17	62510391	A	T	3	47
BRCA	TCGA-A8-A08R	SLC16A6	SNP	Silent	17	66274345	G	A	40	40
BRCA	TCGA-A8-A08R	BTBD17	SNP	Missense_Mutation	17	72352875	T	A	54	91
BRCA	TCGA-A8-A08R	TRIM47	SNP	Silent	17	73872166	T	G	61	42
BRCA	TCGA-A8-A08R	METTL23	SNP	Missense_Mutation	17	74729704	C	G	32	99
BRCA	TCGA-A8-A08R	FXR2	SNP	Missense_Mutation	17	7497244	A	G	15	88
BRCA	TCGA-A8-A08R	TP53	INS	Frame_Shift_Ins	17	7577566	-	A	61	85
BRCA	TCGA-A8-A08R	TMEM107	SNP	Silent	17	8077909	G	C	39	34
BRCA	TCGA-A8-A08R	RGL3	SNP	Silent	19	11507984	C	T	28	55
BRCA	TCGA-A8-A08R	OR10H4	SNP	Silent	19	16060405	T	G	55	41
BRCA	TCGA-A8-A08R	FAM129C	SNP	Missense_Mutation	19	17653023	C	T	27	53
BRCA	TCGA-A8-A08R	FCHO1	SNP	Silent	19	17889452	C	T	22	47
BRCA	TCGA-A8-A08R	COPE	SNP	Silent	19	19016390	G	A	37	40
BRCA	TCGA-A8-A08R	ZNF30	SNP	Missense_Mutation	19	35435393	G	C	44	65
BRCA	TCGA-A8-A08R	ZNF565	SNP	Missense_Mutation	19	36673699	G	T	43	94
BRCA	TCGA-A8-A08R	ZNF570	SNP	Silent	19	37975362	A	C	15	69
BRCA	TCGA-A8-A08R	MAP4K1	SNP	Silent	19	39098533	C	T	19	33
BRCA	TCGA-A8-A08R	LRFN1	SNP	Missense_Mutation	19	39798427	C	G	27	91
BRCA	TCGA-A8-A08R	PPP5D1	SNP	Silent	19	47030324	G	T	45	48
BRCA	TCGA-A8-A08R	SIGLEC9	SNP	Missense_Mutation	19	51628959	C	T	24	49
BRCA	TCGA-A8-A08R	FPR2	SNP	Missense_Mutation	19	52272299	C	A	30	89
BRCA	TCGA-A8-A08R	TMEM87B	SNP	Silent	2	112847241	G	C	47	59
BRCA	TCGA-A8-A08R	SAP130	SNP	Silent	2	128750777	A	T	15	51
BRCA	TCGA-A8-A08R	GALNT13	SNP	Nonsense_Mutation	2	155115571	A	T	7	78
BRCA	TCGA-A8-A08R	FIGN	SNP	Missense_Mutation	2	164466580	C	G	29	100
BRCA	TCGA-A8-A08R	TTN	SNP	Silent	2	179501201	G	A	39	36
BRCA	TCGA-A8-A08R	DNAH7	SNP	Missense_Mutation	2	196753032	A	G	4	79
BRCA	TCGA-A8-A08R	NDUFB3	SNP	Missense_Mutation	2	201950321	G	C	33	59
BRCA	TCGA-A8-A08R	APOB	SNP	Silent	2	21232270	G	T	35	40
BRCA	TCGA-A8-A08R	EFR3B	SNP	Missense_Mutation	2	25344626	T	G	59	86
BRCA	TCGA-A8-A08R	C2orf16	SNP	Silent	2	27802013	G	C	43	48
BRCA	TCGA-A8-A08R	LTBP1	SNP	Silent	2	33482526	G	A	47	65
BRCA	TCGA-A8-A08R	LRPPRC	DEL	Frame_Shift_Del	2	44190742	T	-	59	47
BRCA	TCGA-A8-A08R	CCDC104	SNP	Silent	2	55763007	T	C	61	45
BRCA	TCGA-A8-A08R	GSS	SNP	Missense_Mutation	20	33530406	A	C	11	92
BRCA	TCGA-A8-A08R	SLC12A5	SNP	Missense_Mutation	20	44678383	A	T	11	73
BRCA	TCGA-A8-A08R	PREX1	SNP	Missense_Mutation	20	47305213	G	T	43	85
BRCA	TCGA-A8-A08R	FAM209A	SNP	Missense_Mutation	20	55101071	C	G	25	50
BRCA	TCGA-A8-A08R	BRWD1	SNP	Nonsense_Mutation	21	40571202	C	A	29	69
BRCA	TCGA-A8-A08R	PRAME	SNP	Missense_Mutation	22	22890750	C	G	25	52
BRCA	TCGA-A8-A08R	CELSR1	SNP	Missense_Mutation	22	46777911	G	A	44	53
BRCA	TCGA-A8-A08R	MAPK8IP2	SNP	Missense_Mutation	22	51041670	C	T	27	76
BRCA	TCGA-A8-A08R	MUM1L1	SNP	Missense_Mutation	23	105450903	A	G	16	53
BRCA	TCGA-A8-A08R	DCAF12L2	SNP	Missense_Mutation	23	125298656	C	G	18	59
BRCA	TCGA-A8-A08R	SAGE1	SNP	Silent	23	134991072	A	G	2	50
BRCA	TCGA-A8-A08R	TFE3	SNP	Silent	23	48896923	T	A	59	60
BRCA	TCGA-A8-A08R	CXorf67	SNP	Missense_Mutation	23	51150094	G	A	38	54
BRCA	TCGA-A8-A08R	KIF4A	SNP	Missense_Mutation	23	69594088	G	A	41	88
BRCA	TCGA-A8-A08R	ROPN1	SNP	Silent	3	123688911	G	A	34	66
BRCA	TCGA-A8-A08R	MCM2	SNP	Missense_Mutation	3	127325147	A	C	6	69
BRCA	TCGA-A8-A08R	CP	SNP	Splice_site	3	148903026	T	G	56	56
BRCA	TCGA-A8-A08R	SI	SNP	Missense_Mutation	3	164773011	G	C	45	55
BRCA	TCGA-A8-A08R	PIK3CA	SNP	Missense_Mutation	3	178937452	T	A	64	91
BRCA	TCGA-A8-A08R	FETUB	SNP	Missense_Mutation	3	186362642	C	G	27	51
BRCA	TCGA-A8-A08R	RFC4	SNP	Silent	3	186508118	G	C	45	41
BRCA	TCGA-A8-A08R	ATP13A5	SNP	Missense_Mutation	3	193044787	G	C	36	72
BRCA	TCGA-A8-A08R	LRRC33	SNP	Silent	3	196386694	G	T	41	53
BRCA	TCGA-A8-A08R	KIAA0226	SNP	Missense_Mutation	3	197421305	C	T	23	95
BRCA	TCGA-A8-A08R	IQCF2	SNP	Silent	3	51897216	T	C	64	41
BRCA	TCGA-A8-A08R	CNTN3	SNP	Missense_Mutation	3	74313557	A	G	6	76
BRCA	TCGA-A8-A08R	TADA3	SNP	Missense_Mutation	3	9822135	C	T	23	98
BRCA	TCGA-A8-A08R	ANKRD50	SNP	Nonsense_Mutation	4	125593162	T	A	62	89
BRCA	TCGA-A8-A08R	LRBA	SNP	Missense_Mutation	4	151829594	G	C	41	100
BRCA	TCGA-A8-A08R	SLC25A4	SNP	Missense_Mutation	4	186066044	C	T	23	85
BRCA	TCGA-A8-A08R	RBM47	SNP	Missense_Mutation	4	40427971	G	T	43	99
BRCA	TCGA-A8-A08R	TEC	SNP	Silent	4	48230590	C	T	18	48
BRCA	TCGA-A8-A08R	PDCL2	SNP	Missense_Mutation	4	56435917	A	C	8	65
BRCA	TCGA-A8-A08R	NPFFR2	SNP	Missense_Mutation	4	73013148	G	T	45	100
BRCA	TCGA-A8-A08R	PDLIM5	SNP	Silent	4	95539203	A	T	6	37
BRCA	TCGA-A8-A08R	PJA2	SNP	Missense_Mutation	5	108704338	C	G	32	69
BRCA	TCGA-A8-A08R	WDR36	SNP	Missense_Mutation	5	110445999	C	G	29	69
BRCA	TCGA-A8-A08R	SLC23A1	SNP	Missense_Mutation	5	138715509	G	C	45	57
BRCA	TCGA-A8-A08R	PCDHGA7	SNP	Missense_Mutation	5	140763532	A	G	4	39
BRCA	TCGA-A8-A08R	PCDHGB5	SNP	Missense_Mutation	5	140779116	C	A	18	60
BRCA	TCGA-A8-A08R	PCDHGB7	SNP	Silent	5	140797618	C	T	27	52
BRCA	TCGA-A8-A08R	CPEB4	SNP	Silent	5	173317753	A	G	5	56
BRCA	TCGA-A8-A08R	UGT3A1	SNP	Missense_Mutation	5	35955951	C	T	19	46
BRCA	TCGA-A8-A08R	TUBE1	SNP	Missense_Mutation	6	112397239	C	A	20	79
BRCA	TCGA-A8-A08R	SYNE1	SNP	Nonsense_Mutation	6	152576053	G	A	45	86
BRCA	TCGA-A8-A08R	JARID2	SNP	Missense_Mutation	6	15496556	C	G	22	76
BRCA	TCGA-A8-A08R	BTN1A1	SNP	Missense_Mutation	6	26509208	T	G	51	57
BRCA	TCGA-A8-A08R	DNAH8	SNP	Missense_Mutation	6	38825426	C	A	29	73
BRCA	TCGA-A8-A08R	XPO5	SNP	Missense_Mutation	6	43491629	G	T	35	57
BRCA	TCGA-A8-A08R	IL17A	SNP	Silent	6	52053964	C	A	21	66
BRCA	TCGA-A8-A08R	MLIP	SNP	Missense_Mutation	6	53986383	C	G	30	65
BRCA	TCGA-A8-A08R	BEND6	SNP	Silent	6	56857343	C	A	29	51
BRCA	TCGA-A8-A08R	ANKRD6	SNP	Missense_Mutation	6	90340379	G	A	40	51
BRCA	TCGA-A8-A08R	MAP3K7	SNP	Silent	6	91257871	T	G	63	61
BRCA	TCGA-A8-A08R	MUC12	SNP	Missense_Mutation	7	100646595	C	T	22	62
BRCA	TCGA-A8-A08R	ATXN7L1	SNP	Splice_Site	7	105260645	A	T	14	90
BRCA	TCGA-A8-A08R	TFEC	SNP	Missense_Mutation	7	115580952	G	T	42	96
BRCA	TCGA-A8-A08R	NUP205	SNP	Missense_Mutation	7	135300790	A	G	10	91
BRCA	TCGA-A8-A08R	FKBP6	SNP	Missense_Mutation	7	72756874	G	T	47	52
BRCA	TCGA-A8-A08R	CD36	SNP	Silent	7	80303418	T	G	56	47
BRCA	TCGA-A8-A08R	LRRD1	SNP	Missense_Mutation	7	91775484	A	T	2	80
BRCA	TCGA-A8-A08R	FZD6	SNP	Missense_Mutation	8	104340619	T	G	60	89
BRCA	TCGA-A8-A08R	DCAF13	SNP	Missense_Mutation	8	104452383	A	G	11	52
BRCA	TCGA-A8-A08R	RIMS2	SNP	Missense_Mutation	8	104973347	T	C	52	79
BRCA	TCGA-A8-A08R	ZFPM2	SNP	Missense_Mutation	8	106814808	G	C	34	100
BRCA	TCGA-A8-A08R	TCEA1	SNP	Missense_Mutation	8	54900706	C	A	24	97
BRCA	TCGA-A8-A08R	RALYL	SNP	Missense_Mutation	8	85833143	G	T	36	64
BRCA	TCGA-A8-A08R	KIAA0368	SNP	Missense_Mutation	9	114145598	C	A	17	96
BRCA	TCGA-A8-A08R	ADAMTSL1	SNP	Silent	9	18474248	G	C	43	87
BRCA	TCGA-A8-A08R	PAX5	SNP	Missense_Mutation	9	37015189	T	C	49	93
BRCA	TCGA-A8-A08R	FGD3	SNP	Missense_Mutation	9	95795090	A	T	7	59
BRCA	TCGA-A8-A08S	MTOR	SNP	Missense_Mutation	1	11319442	C	T	27	63
BRCA	TCGA-A8-A08S	NPHS2	SNP	Missense_Mutation	1	179523663	C	T	25	74
BRCA	TCGA-A8-A08S	KDM5B	SNP	Missense_Mutation	1	202746170	C	T	19	100
BRCA	TCGA-A8-A08S	OBSCN	DEL	Frame_Shift_Del	1	228464221	G	-	35	57
BRCA	TCGA-A8-A08S	OBSCN	INS	Frame_Shift_Ins	1	228464225	-	G	25	85
BRCA	TCGA-A8-A08S	NCDN	SNP	Missense_Mutation	1	36028200	A	C	6	53
BRCA	TCGA-A8-A08S	LDLRAD1	SNP	Silent	1	54479916	G	A	46	46
BRCA	TCGA-A8-A08S	CALHM3	SNP	Missense_Mutation	10	105233443	T	G	59	69
BRCA	TCGA-A8-A08S	C11orf63	SNP	Missense_Mutation	11	122774779	A	C	14	59
BRCA	TCGA-A8-A08S	IGSF9B	SNP	Silent	11	133790845	T	G	59	67
BRCA	TCGA-A8-A08S	ZP1	SNP	Silent	11	60642669	G	T	42	45
BRCA	TCGA-A8-A08S	SETD1B	DEL	Frame_Shift_Del	12	122243990	CACGTGGAGCTGGA	-	21	98
BRCA	TCGA-A8-A08S	CDK4	SNP	Missense_Mutation	12	58144765	T	G	63	75
BRCA	TCGA-A8-A08S	TGM1	SNP	Missense_Mutation	14	24727530	A	C	6	86
BRCA	TCGA-A8-A08S	HEATR5A	SNP	Missense_Mutation	14	31855776	C	T	19	64
BRCA	TCGA-A8-A08S	FOXA1	DEL	Frame_Shift_Del	14	38061228	AACAT	-	9	85
BRCA	TCGA-A8-A08S	ABCC6	SNP	Missense_Mutation	16	16244574	T	G	50	61
BRCA	TCGA-A8-A08S	SMCR8	SNP	Missense_Mutation	17	18226154	A	C	6	55
BRCA	TCGA-A8-A08S	MPP3	SNP	Splice_site	17	41909250	C	A	21	80
BRCA	TCGA-A8-A08S	FZD2	SNP	Silent	17	42636265	C	T	31	50
BRCA	TCGA-A8-A08S	ACE	SNP	Silent	17	61570944	C	T	19	36
BRCA	TCGA-A8-A08S	C17orf70	SNP	Missense_Mutation	17	79508346	C	T	27	60
BRCA	TCGA-A8-A08S	NPC1	SNP	Silent	18	21114479	C	T	19	20
BRCA	TCGA-A8-A08S	SIN3B	SNP	Missense_Mutation	19	16942408	G	A	33	83
BRCA	TCGA-A8-A08S	GMIP	SNP	Silent	19	19746227	C	T	24	54
BRCA	TCGA-A8-A08S	ZNF676	SNP	Missense_Mutation	19	22363549	G	A	35	65
BRCA	TCGA-A8-A08S	AKT2	SNP	Nonsense_Mutation	19	40761100	G	A	37	48
BRCA	TCGA-A8-A08S	ERCC2	SNP	Missense_Mutation	19	45868130	T	C	55	85
BRCA	TCGA-A8-A08S	ZNF615	SNP	Missense_Mutation	19	52497121	C	T	20	49
BRCA	TCGA-A8-A08S	NLRP2	SNP	Missense_Mutation	19	55494133	T	G	59	71
BRCA	TCGA-A8-A08S	GPR108	INS	Frame_Shift_Ins	19	6737533	-	C	46	55
BRCA	TCGA-A8-A08S	FBN3	DEL	Frame_Shift_Del	19	8176051	G	-	39	26
BRCA	TCGA-A8-A08S	GALNT5	SNP	Silent	2	158115248	G	A	45	63
BRCA	TCGA-A8-A08S	C2orf47	SNP	Missense_Mutation	2	200826596	G	T	44	73
BRCA	TCGA-A8-A08S	EML6	SNP	Missense_Mutation	2	55090940	A	G	7	89
BRCA	TCGA-A8-A08S	TSGA10	SNP	Missense_Mutation	2	99725408	C	T	19	74
BRCA	TCGA-A8-A08S	EDEM2	SNP	Missense_Mutation	20	33706505	T	C	52	91
BRCA	TCGA-A8-A08S	PTGIS	INS	Frame_Shift_Ins	20	48160880	-	TG	32	55
BRCA	TCGA-A8-A08S	CDH26	SNP	Missense_Mutation	20	58547144	G	A	38	50
BRCA	TCGA-A8-A08S	PRPF6	SNP	Missense_Mutation	20	62655955	A	G	1	92
BRCA	TCGA-A8-A08S	WWC3	SNP	Silent	23	10106889	C	T	19	45
BRCA	TCGA-A8-A08S	FRMPD4	SNP	Missense_Mutation	23	12735775	C	T	21	94
BRCA	TCGA-A8-A08S	MAGEB6	SNP	Missense_Mutation	23	26212915	G	T	45	44
BRCA	TCGA-A8-A08S	SLC6A1	SNP	Silent	3	11059119	C	T	27	46
BRCA	TCGA-A8-A08S	PHLDB2	SNP	Silent	3	111604184	A	G	7	37
BRCA	TCGA-A8-A08S	XCR1	SNP	Missense_Mutation	3	46063031	T	G	59	51
BRCA	TCGA-A8-A08S	CISH	INS	Frame_Shift_Ins	3	50645186	-	G	7	66
BRCA	TCGA-A8-A08S	ARAP2	SNP	Missense_Mutation	4	36126581	C	A	32	69
BRCA	TCGA-A8-A08S	ABCG2	DEL	Splice_Site	4	89018761	T	-	56	76
BRCA	TCGA-A8-A08S	EGR1	SNP	Silent	5	137801480	G	A	45	63
BRCA	TCGA-A8-A08S	LRRC70	SNP	Missense_Mutation	5	61876059	G	C	35	54
BRCA	TCGA-A8-A08S	PIK3R1	INS	In_Frame_Ins	5	67589613	-	AAGTCGAGAATATGATAG	1	89
BRCA	TCGA-A8-A08S	ATXN1	SNP	Missense_Mutation	6	16328427	G	A	39	55
BRCA	TCGA-A8-A08S	MAS1L	SNP	Silent	6	29454672	C	T	19	36
BRCA	TCGA-A8-A08S	FLOT1	SNP	Missense_Mutation	6	30698819	C	T	23	92
BRCA	TCGA-A8-A08S	RIMS1	SNP	Missense_Mutation	6	73023340	G	T	48	98
BRCA	TCGA-A8-A08S	HTR1E	INS	Frame_Shift_Ins	6	87726143	-	T	8	83
BRCA	TCGA-A8-A08S	NYAP1	SNP	Missense_Mutation	7	100084731	G	A	39	62
BRCA	TCGA-A8-A08S	CPSF1	SNP	Missense_Mutation	8	145625003	C	A	20	74
BRCA	TCGA-A8-A08S	OSGIN2	SNP	Missense_Mutation	8	90937095	A	G	4	52
BRCA	TCGA-A8-A08T	PRUNE	SNP	Missense_Mutation	1	151001299	A	G	8	50
BRCA	TCGA-A8-A08T	KCNT2	SNP	Missense_Mutation	1	196311258	C	T	29	100
BRCA	TCGA-A8-A08T	SDE2	SNP	Missense_Mutation	1	226173176	C	G	32	77
BRCA	TCGA-A8-A08T	JAK1	SNP	Missense_Mutation	1	65301180	T	G	62	74
BRCA	TCGA-A8-A08T	PDZD8	SNP	Missense_Mutation	10	119043132	A	G	2	59
BRCA	TCGA-A8-A08T	ANKRD26	SNP	Missense_Mutation	10	27326874	C	T	20	43
BRCA	TCGA-A8-A08T	LUZP2	SNP	Missense_Mutation	11	25098915	C	T	21	49
BRCA	TCGA-A8-A08T	PCF11	SNP	Silent	11	82877733	A	G	4	60
BRCA	TCGA-A8-A08T	TRIM49C	SNP	Missense_Mutation	11	89774388	G	T	43	62
BRCA	TCGA-A8-A08T	ACVR1B	SNP	Missense_Mutation	12	52387803	G	A	48	100
BRCA	TCGA-A8-A08T	AHNAK2	SNP	Nonsense_Mutation	14	105420635	G	A	37	46
BRCA	TCGA-A8-A08T	TOX4	SNP	Nonsense_Mutation	14	21961324	G	T	45	86
BRCA	TCGA-A8-A08T	CBFB	DNP	Nonsense_Mutation	16	67070595	GC	AA	42	62
BRCA	TCGA-A8-A08T	PSMA8	SNP	Silent	18	23731889	G	T	39	46
BRCA	TCGA-A8-A08T	HAUS8	SNP	Missense_Mutation	19	17169452	C	G	32	53
BRCA	TCGA-A8-A08T	SHD	SNP	Missense_Mutation	19	4283129	C	T	32	58
BRCA	TCGA-A8-A08T	LILRA3	SNP	Missense_Mutation	19	54802507	C	T	31	48
BRCA	TCGA-A8-A08T	CHPF	SNP	Silent	2	220404537	G	A	47	69
BRCA	TCGA-A8-A08T	HADHB	SNP	Missense_Mutation	2	26505908	A	T	2	53
BRCA	TCGA-A8-A08T	RAB11FIP5	SNP	Silent	2	73316121	G	A	34	67
BRCA	TCGA-A8-A08T	NCOA3	SNP	Missense_Mutation	20	46264773	T	G	63	78
BRCA	TCGA-A8-A08T	APOL1	SNP	Nonsense_Mutation	22	36661744	C	T	19	29
BRCA	TCGA-A8-A08T	TCF20	DEL	In_Frame_Del	22	42609296	GTT	-	36	51
BRCA	TCGA-A8-A08T	G6PD	SNP	Silent	23	153761953	A	T	10	38
BRCA	TCGA-A8-A08T	NHS	SNP	Missense_Mutation	23	17745318	C	T	19	100
BRCA	TCGA-A8-A08T	PLCXD1	SNP	Missense_Mutation	23	209780	C	T	23	50
BRCA	TCGA-A8-A08T	HDAC6	SNP	Silent	23	48672895	C	T	22	54
BRCA	TCGA-A8-A08T	OPHN1	SNP	Missense_Mutation	23	67339171	G	C	35	72
BRCA	TCGA-A8-A08T	BRWD3	SNP	Missense_Mutation	23	79932420	T	A	54	76
BRCA	TCGA-A8-A08T	DACH2	SNP	Silent	23	86071092	T	C	55	55
BRCA	TCGA-A8-A08T	PCDH19	SNP	Missense_Mutation	23	99657715	G	A	44	96
BRCA	TCGA-A8-A08T	SLC9C1	SNP	Missense_Mutation	3	111988846	T	G	63	62
BRCA	TCGA-A8-A08T	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A8-A08T	ZNF639	SNP	Missense_Mutation	3	179051631	G	T	36	59
BRCA	TCGA-A8-A08T	C3orf71	SNP	Missense_Mutation	3	48956169	C	G	29	46
BRCA	TCGA-A8-A08T	CACNA1D	SNP	Silent	3	53842707	C	T	26	60
BRCA	TCGA-A8-A08T	POU4F2	SNP	Missense_Mutation	4	147561836	G	A	39	87
BRCA	TCGA-A8-A08T	FAT1	SNP	Missense_Mutation	4	187525601	G	A	39	67
BRCA	TCGA-A8-A08T	CTNND2	SNP	Missense_Mutation	5	11346597	C	A	28	63
BRCA	TCGA-A8-A08T	LPCAT1	SNP	Nonsense_Mutation	5	1479762	G	A	45	89
BRCA	TCGA-A8-A08T	PPARGC1B	SNP	Nonsense_Mutation	5	149212267	C	T	23	79
BRCA	TCGA-A8-A08T	PMS2	SNP	Silent	7	6031635	T	C	51	48
BRCA	TCGA-A8-A08T	USP17L2	DNP	Missense_Mutation	8	11995399	GT	TC	36	49
BRCA	TCGA-A8-A08T	TSNARE1	SNP	Silent	8	143436020	C	T	31	45
BRCA	TCGA-A8-A08T	ANK1	SNP	Missense_Mutation	8	41552742	C	T	27	82
BRCA	TCGA-A8-A08T	PRPF4	DEL	Frame_Shift_Del	9	116050502	G	-	39	94
BRCA	TCGA-A8-A08T	FAM75C1	SNP	Missense_Mutation	9	90538208	G	A	36	54
BRCA	TCGA-A8-A08X	FCRL1	SNP	Missense_Mutation	1	157773658	C	T	24	17
BRCA	TCGA-A8-A08X	PLEKHS1	SNP	Missense_Mutation	10	115540376	A	G	8	62
BRCA	TCGA-A8-A08X	SVIL	SNP	Missense_Mutation	10	29813441	C	T	27	99
BRCA	TCGA-A8-A08X	RPP30	SNP	Missense_Mutation	10	92654535	A	G	12	64
BRCA	TCGA-A8-A08X	PDS5B	SNP	Missense_Mutation	13	33233398	A	T	4	93
BRCA	TCGA-A8-A08X	FNDC3A	DEL	Splice_Site	13	49712942	GTAA	-	44	85
BRCA	TCGA-A8-A08X	POLE2	SNP	Missense_Mutation	14	50122403	C	T	27	61
BRCA	TCGA-A8-A08X	VRTN	SNP	Missense_Mutation	14	74824804	C	T	27	56
BRCA	TCGA-A8-A08X	CRHR1	SNP	Missense_Mutation	17	43912159	G	C	33	53
BRCA	TCGA-A8-A08X	TP53	SNP	Missense_Mutation	17	7578403	C	A	25	84
BRCA	TCGA-A8-A08X	IL12RB1	SNP	Missense_Mutation	19	18186597	G	A	41	52
BRCA	TCGA-A8-A08X	APLP1	SNP	Silent	19	36370038	C	T	27	37
BRCA	TCGA-A8-A08X	TET3	SNP	Splice_Site	2	74275539	G	A	44	98
BRCA	TCGA-A8-A08X	TEX13B	SNP	Silent	23	107224730	G	A	39	42
BRCA	TCGA-A8-A08X	STAC	SNP	Missense_Mutation	3	36534691	G	A	39	55
BRCA	TCGA-A8-A08X	TMEM110-MUSTN1	DEL	Frame_Shift_Del	3	52876847	G	-	47	80
BRCA	TCGA-A8-A08X	STAP1	SNP	Splice_site	4	68449419	G	C	33	78
BRCA	TCGA-A8-A08X	MAN2A1	SNP	Silent	5	109091135	T	C	50	55
BRCA	TCGA-A8-A08X	SERPINE1	SNP	Silent	7	100776989	G	A	38	47
BRCA	TCGA-A8-A08X	COX6C	SNP	Missense_Mutation	8	100899792	C	A	31	72
BRCA	TCGA-A8-A08X	DLC1	SNP	Silent	8	12957977	G	A	38	54
BRCA	TCGA-A8-A08X	PAEP	SNP	Missense_Mutation	9	138456155	C	A	17	46
BRCA	TCGA-A8-A08Z	CELA2B	SNP	Missense_Mutation	1	15802970	C	T	30	72
BRCA	TCGA-A8-A08Z	CD1E	SNP	Missense_Mutation	1	158326619	C	T	25	63
BRCA	TCGA-A8-A08Z	LHX9	SNP	Silent	1	197889140	C	T	27	61
BRCA	TCGA-A8-A08Z	KIAA1804	SNP	Missense_Mutation	1	233518401	A	G	11	72
BRCA	TCGA-A8-A08Z	CLCA2	SNP	Missense_Mutation	1	86894174	G	A	41	90
BRCA	TCGA-A8-A08Z	LIPN	SNP	Nonsense_Mutation	10	90522041	C	T	27	62
BRCA	TCGA-A8-A08Z	PDE6C	SNP	Missense_Mutation	10	95380689	G	T	42	64
BRCA	TCGA-A8-A08Z	FLI1	SNP	Silent	11	128680832	C	T	30	46
BRCA	TCGA-A8-A08Z	RTN4RL2	SNP	Missense_Mutation	11	57235333	T	A	54	66
BRCA	TCGA-A8-A08Z	FAT3	SNP	Missense_Mutation	11	92087511	A	T	8	78
BRCA	TCGA-A8-A08Z	FAM48A	SNP	Silent	13	37584782	C	T	28	93
BRCA	TCGA-A8-A08Z		SNP	Missense_Mutation	15	102292787	G	C	33	59
BRCA	TCGA-A8-A08Z	TPM1	SNP	Missense_Mutation	15	63353074	C	G	23	100
BRCA	TCGA-A8-A08Z	ISLR2	SNP	Silent	15	74425131	G	A	38	43
BRCA	TCGA-A8-A08Z	C16orf62	DEL	In_Frame_Del	16	19702725	AAC	-	1	88
BRCA	TCGA-A8-A08Z	MYO15A	SNP	Silent	17	18022963	C	T	23	25
BRCA	TCGA-A8-A08Z	ERBB2	SNP	Missense_Mutation	17	37881332	G	A	40	99
BRCA	TCGA-A8-A08Z	NR1H2	SNP	Missense_Mutation	19	50882307	C	T	19	66
BRCA	TCGA-A8-A08Z	USP29	SNP	Missense_Mutation	19	57640254	C	T	29	42
BRCA	TCGA-A8-A08Z	CIR1	SNP	Missense_Mutation	2	175213880	T	C	56	69
BRCA	TCGA-A8-A08Z	RUNX1	INS	Frame_Shift_Ins	21	36252856	-	T	32	100
BRCA	TCGA-A8-A08Z	HCFC1	SNP	Missense_Mutation	23	153224817	G	A	38	63
BRCA	TCGA-A8-A08Z	RS1	SNP	Missense_Mutation	23	18662718	G	C	48	62
BRCA	TCGA-A8-A08Z	TBL1XR1	SNP	Splice_Site	3	176771560	C	G	18	98
BRCA	TCGA-A8-A08Z	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A08Z	USP13	SNP	Missense_Mutation	3	179478911	G	C	37	99
BRCA	TCGA-A8-A08Z	EIF4A2	SNP	Splice_Site	3	186503952	G	A	34	92
BRCA	TCGA-A8-A08Z	ALPK1	SNP	Missense_Mutation	4	113303616	G	A	40	92
BRCA	TCGA-A8-A08Z	RFC1	SNP	Silent	4	39308302	G	A	39	37
BRCA	TCGA-A8-A08Z	PCDHGA5	SNP	Silent	5	140744719	C	T	19	42
BRCA	TCGA-A8-A08Z	MAP3K1	DEL	Frame_Shift_Del	5	56177537	TG	-	55	86
BRCA	TCGA-A8-A08Z	MAP3K1	SNP	Nonsense_Mutation	5	56178169	C	T	29	91
BRCA	TCGA-A8-A08Z	RAD17	SNP	Missense_Mutation	5	68684870	A	G	1	71
BRCA	TCGA-A8-A08Z	WDR67	SNP	Silent	8	124132397	C	T	29	55
BRCA	TCGA-A8-A08Z	COL27A1	SNP	Silent	9	116930357	C	T	27	50
BRCA	TCGA-A8-A08Z	DAB2IP	SNP	Silent	9	124519319	G	A	36	62
BRCA	TCGA-A8-A090	IGSF3	SNP	Silent	1	117146250	A	G	11	45
BRCA	TCGA-A8-A090	PRAMEF14	SNP	Silent	1	13669040	G	A	37	51
BRCA	TCGA-A8-A090	ATAD3B	SNP	Silent	1	1430987	C	T	27	44
BRCA	TCGA-A8-A090	OTUD7B	SNP	Missense_Mutation	1	149931697	C	T	32	96
BRCA	TCGA-A8-A090	SZRD1	SNP	Missense_Mutation	1	16719821	C	T	18	94
BRCA	TCGA-A8-A090	SEC16B	SNP	Silent	1	177905472	G	A	43	51
BRCA	TCGA-A8-A090	MYOM3	SNP	Missense_Mutation	1	24432477	C	T	19	67
BRCA	TCGA-A8-A090	ZCCHC11	SNP	Splice_Site	1	52933940	C	A	32	90
BRCA	TCGA-A8-A090	CYR61	SNP	Missense_Mutation	1	86047823	G	A	45	100
BRCA	TCGA-A8-A090	PNLIPRP1	SNP	Missense_Mutation	10	118368603	C	T	19	53
BRCA	TCGA-A8-A090	MYBPC3	SNP	Missense_Mutation	11	47363660	C	T	27	82
BRCA	TCGA-A8-A090	DENND5A	SNP	Silent	11	9167307	G	A	45	64
BRCA	TCGA-A8-A090	ITPKA	SNP	Missense_Mutation	15	41794697	T	C	59	80
BRCA	TCGA-A8-A090	SLC5A2	SNP	Silent	16	31500276	C	A	32	55
BRCA	TCGA-A8-A090	LONP2	SNP	Missense_Mutation	16	48303987	A	T	1	72
BRCA	TCGA-A8-A090	CEP95	SNP	Missense_Mutation	17	62533802	G	A	45	100
BRCA	TCGA-A8-A090	TCF4	SNP	Splice_site	18	52928697	C	T	23	56
BRCA	TCGA-A8-A090	FAM124B	SNP	Missense_Mutation	2	225266148	T	C	52	51
BRCA	TCGA-A8-A090	SYCP2	SNP	Missense_Mutation	20	58467628	T	C	52	49
BRCA	TCGA-A8-A090	CLDN8	SNP	Silent	21	31587665	A	G	14	34
BRCA	TCGA-A8-A090	KRTAP19-6	SNP	Missense_Mutation	21	31913983	A	G	9	50
BRCA	TCGA-A8-A090	TMPRSS2	SNP	Silent	21	42866383	C	T	19	48
BRCA	TCGA-A8-A090	GSPT2	SNP	Silent	23	51488498	C	T	32	62
BRCA	TCGA-A8-A090	SEMA5B	SNP	Missense_Mutation	3	122634434	G	A	47	74
BRCA	TCGA-A8-A090	OPA1	SNP	Missense_Mutation	3	193365903	C	T	31	82
BRCA	TCGA-A8-A090	FLNB	INS	Frame_Shift_Ins	3	58140575	-	G	11	93
BRCA	TCGA-A8-A090	DCHS2	SNP	Missense_Mutation	4	155253827	A	T	4	46
BRCA	TCGA-A8-A090	KLHL8	SNP	Missense_Mutation	4	88104522	G	A	39	97
BRCA	TCGA-A8-A090	MED7	SNP	Nonsense_Mutation	5	156566070	C	A	29	100
BRCA	TCGA-A8-A090	BHMT2	SNP	Missense_Mutation	5	78379147	C	T	27	78
BRCA	TCGA-A8-A090	LAMA2	SNP	Nonsense_Mutation	6	129712680	C	T	31	75
BRCA	TCGA-A8-A090	WNT2	SNP	Silent	7	116918218	G	A	39	46
BRCA	TCGA-A8-A090	PDK4	SNP	Missense_Mutation	7	95216383	T	A	63	89
BRCA	TCGA-A8-A090	ANK1	SNP	Silent	8	41525809	C	T	32	51
BRCA	TCGA-A8-A090	CRISPLD1	SNP	Missense_Mutation	8	75927084	C	T	27	70
BRCA	TCGA-A8-A090	PPP1R3B	DEL	In_Frame_Del	8	8998443	GTAGAT	-	44	61
BRCA	TCGA-A8-A090	CERCAM	SNP	Missense_Mutation	9	131186755	G	T	48	96
BRCA	TCGA-A8-A091	AADACL4	SNP	Missense_Mutation	1	12726571	G	A	40	59
BRCA	TCGA-A8-A091	PLCE1	SNP	Silent	10	95791949	G	A	40	44
BRCA	TCGA-A8-A091	NDUFS3	SNP	Nonsense_Mutation	11	47603905	G	A	47	99
BRCA	TCGA-A8-A091	TRMT112	SNP	Missense_Mutation	11	64084586	C	T	29	50
BRCA	TCGA-A8-A091	SLC22A12	SNP	Silent	11	64368333	G	C	45	54
BRCA	TCGA-A8-A091	PPFIA1	SNP	Missense_Mutation	11	70189979	G	A	38	100
BRCA	TCGA-A8-A091	GPR83	SNP	Missense_Mutation	11	94113925	C	T	27	98
BRCA	TCGA-A8-A091	NCOR2	INS	Frame_Shift_Ins	12	124882708	-	T	32	66
BRCA	TCGA-A8-A091	PRKCB	SNP	Missense_Mutation	16	24202462	C	T	19	81
BRCA	TCGA-A8-A091	AXIN1	SNP	Silent	16	396381	C	T	23	47
BRCA	TCGA-A8-A091	CDH1	SNP	Missense_Mutation	16	68844139	G	A	45	94
BRCA	TCGA-A8-A091	ZMYND15	SNP	Missense_Mutation	17	4645075	C	A	22	80
BRCA	TCGA-A8-A091	APOB	SNP	Silent	2	21236081	G	A	44	54
BRCA	TCGA-A8-A091	VIL1	SNP	Missense_Mutation	2	219294164	G	A	37	98
BRCA	TCGA-A8-A091	CEP68	SNP	Missense_Mutation	2	65298871	C	T	27	45
BRCA	TCGA-A8-A091	BTBD3	SNP	Silent	20	11903291	T	C	52	80
BRCA	TCGA-A8-A091	ARFGEF2	SNP	Missense_Mutation	20	47632847	C	T	29	100
BRCA	TCGA-A8-A091	PLXNB1	SNP	Silent	3	48454157	G	A	45	54
BRCA	TCGA-A8-A091	DRD5	SNP	Silent	4	9784610	C	A	30	50
BRCA	TCGA-A8-A091	PTPRZ1	SNP	Missense_Mutation	7	121651597	C	T	31	87
BRCA	TCGA-A8-A091	CPSF1	SNP	Missense_Mutation	8	145625652	G	A	42	96
BRCA	TCGA-A8-A091	CHD7	SNP	Missense_Mutation	8	61763087	G	A	38	60
BRCA	TCGA-A8-A091	VCPIP1	DEL	In_Frame_Del	8	67578717	ATCGAACAG	-	4	71
BRCA	TCGA-A8-A092	ARNT	SNP	Missense_Mutation	1	150801630	A	G	4	55
BRCA	TCGA-A8-A092	TMOD4	SNP	Splice_site	1	151143396	C	T	24	87
BRCA	TCGA-A8-A092	LELP1	SNP	Missense_Mutation	1	153177188	C	T	31	76
BRCA	TCGA-A8-A092	ADAM15	SNP	Silent	1	155029769	C	A	22	46
BRCA	TCGA-A8-A092	PIGR	SNP	Missense_Mutation	1	207110830	G	C	33	43
BRCA	TCGA-A8-A092	ANGEL2	SNP	Missense_Mutation	1	213168400	A	C	2	89
BRCA	TCGA-A8-A092	SUSD4	SNP	Missense_Mutation	1	223408322	G	A	45	50
BRCA	TCGA-A8-A092	PARP1	SNP	Missense_Mutation	1	226561965	C	G	29	100
BRCA	TCGA-A8-A092	EVI5	SNP	Missense_Mutation	1	93168985	G	C	42	66
BRCA	TCGA-A8-A092	PAX2	DEL	Frame_Shift_Del	10	102587349	TGCTG	-	55	82
BRCA	TCGA-A8-A092	WDR11	SNP	Missense_Mutation	10	122649430	G	C	47	100
BRCA	TCGA-A8-A092	MYO3A	SNP	Missense_Mutation	10	26462851	G	T	33	57
BRCA	TCGA-A8-A092	CYP26A1	SNP	Missense_Mutation	10	94836315	G	C	33	54
BRCA	TCGA-A8-A092	SORBS1	SNP	Nonsense_Mutation	10	97096417	G	C	45	58
BRCA	TCGA-A8-A092	LCOR	SNP	Missense_Mutation	10	98714962	G	C	43	98
BRCA	TCGA-A8-A092	OR51A4	SNP	Nonsense_Mutation	11	4967817	T	A	63	51
BRCA	TCGA-A8-A092	MRGPRD	SNP	Missense_Mutation	11	68747936	G	A	37	47
BRCA	TCGA-A8-A092	CDKN1B	DEL	Frame_Shift_Del	12	12871175	G	-	33	57
BRCA	TCGA-A8-A092	PIWIL1	SNP	Missense_Mutation	12	130847321	C	T	19	71
BRCA	TCGA-A8-A092	GOLGA3	SNP	Missense_Mutation	12	133381492	C	A	24	50
BRCA	TCGA-A8-A092	SLCO1C1	SNP	Silent	12	20893300	G	A	45	56
BRCA	TCGA-A8-A092	KRT86	SNP	Missense_Mutation	12	52699981	G	T	36	75
BRCA	TCGA-A8-A092	ANO2	SNP	Silent	12	5744346	G	A	38	32
BRCA	TCGA-A8-A092	ING4	SNP	Missense_Mutation	12	6762144	C	T	29	94
BRCA	TCGA-A8-A092	CD69	SNP	Missense_Mutation	12	9907797	G	C	33	64
BRCA	TCGA-A8-A092	TPTE2	SNP	Missense_Mutation	13	20048120	C	T	19	49
BRCA	TCGA-A8-A092	HSPA2	SNP	Missense_Mutation	14	65008067	G	A	43	99
BRCA	TCGA-A8-A092	RBM25	SNP	Missense_Mutation	14	73572680	G	A	37	83
BRCA	TCGA-A8-A092	DICER1	SNP	Missense_Mutation	14	95560349	G	A	37	100
BRCA	TCGA-A8-A092	LRRK1	SNP	Missense_Mutation	15	101566209	C	T	25	94
BRCA	TCGA-A8-A092	RYR3	SNP	Missense_Mutation	15	34130404	G	A	45	100
BRCA	TCGA-A8-A092	UBR1	SNP	Missense_Mutation	15	43282235	C	T	29	71
BRCA	TCGA-A8-A092	FBN1	SNP	Silent	15	48818433	G	A	47	45
BRCA	TCGA-A8-A092	SPPL2A	SNP	Missense_Mutation	15	51024842	G	C	33	70
BRCA	TCGA-A8-A092	FAH	SNP	Missense_Mutation	15	80454614	C	T	31	57
BRCA	TCGA-A8-A092	HAGH	SNP	Silent	16	1866966	G	A	45	64
BRCA	TCGA-A8-A092	TBX6	SNP	Missense_Mutation	16	30097589	G	A	38	52
BRCA	TCGA-A8-A092	UBN1	SNP	Silent	16	4920875	G	A	33	56
BRCA	TCGA-A8-A092	CNTNAP4	SNP	Missense_Mutation	16	76572193	G	A	34	58
BRCA	TCGA-A8-A092	TP53	SNP	Missense_Mutation	17	7577568	C	T	17	93
BRCA	TCGA-A8-A092	GATAD2A	SNP	Silent	19	19612063	G	A	33	65
BRCA	TCGA-A8-A092	ZNF682	SNP	Silent	19	20117297	C	T	32	63
BRCA	TCGA-A8-A092	PSG1	SNP	Splice_site	19	43373185	C	T	31	59
BRCA	TCGA-A8-A092	TRPM4	SNP	Missense_Mutation	19	49674925	G	A	33	90
BRCA	TCGA-A8-A092	MUC16	SNP	Silent	19	9058646	T	C	63	38
BRCA	TCGA-A8-A092	MUC16	SNP	Missense_Mutation	19	9059401	T	C	60	53
BRCA	TCGA-A8-A092	ZEB2	SNP	Missense_Mutation	2	145147374	C	T	31	100
BRCA	TCGA-A8-A092	PID1	SNP	Splice_Site	2	230020681	C	T	28	97
BRCA	TCGA-A8-A092	FAM179A	SNP	Missense_Mutation	2	29259479	G	A	38	57
BRCA	TCGA-A8-A092	MTIF2	DEL	In_Frame_Del	2	55463838	AAC	-	1	51
BRCA	TCGA-A8-A092	UQCR10	SNP	Nonsense_Mutation	22	30163499	C	T	29	78
BRCA	TCGA-A8-A092	SLC25A14	SNP	Splice_site	23	129474326	G	T	41	69
BRCA	TCGA-A8-A092	FHL1	SNP	Missense_Mutation	23	135291482	C	T	32	68
BRCA	TCGA-A8-A092	DMD	SNP	Silent	23	32382795	C	T	32	58
BRCA	TCGA-A8-A092	CYBB	SNP	Nonsense_Mutation	23	37665784	C	T	29	70
BRCA	TCGA-A8-A092	CDK16	SNP	Missense_Mutation	23	47086098	A	C	8	88
BRCA	TCGA-A8-A092	DGKK	SNP	Missense_Mutation	23	50111995	G	A	37	49
BRCA	TCGA-A8-A092	SATL1	SNP	Missense_Mutation	23	84349940	C	T	31	47
BRCA	TCGA-A8-A092	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A092	WDR82	SNP	Nonsense_Mutation	3	52293228	G	A	45	100
BRCA	TCGA-A8-A092	RAB28	SNP	Silent	4	13383134	G	A	45	98
BRCA	TCGA-A8-A092	HSD17B13	SNP	Missense_Mutation	4	88239546	C	T	19	67
BRCA	TCGA-A8-A092	DMXL1	SNP	Missense_Mutation	5	118525430	A	G	1	67
BRCA	TCGA-A8-A092	LCP2	SNP	Silent	5	169720329	A	G	8	40
BRCA	TCGA-A8-A092	RASGEF1C	SNP	Missense_Mutation	5	179545842	G	A	41	90
BRCA	TCGA-A8-A092	SLC30A5	SNP	Silent	5	68419204	G	C	45	62
BRCA	TCGA-A8-A092	CCNB1	DEL	Splice_Site	5	68467280	GTAA	-	44	99
BRCA	TCGA-A8-A092	PREP	SNP	Missense_Mutation	6	105730425	C	T	29	75
BRCA	TCGA-A8-A092	HIST1H2BK	SNP	Silent	6	27114440	C	T	29	65
BRCA	TCGA-A8-A092	MDC1	SNP	Silent	6	30673675	G	T	35	56
BRCA	TCGA-A8-A092	BMP6	SNP	Missense_Mutation	6	7845400	G	A	40	54
BRCA	TCGA-A8-A092	UBE2J1	INS	Frame_Shift_Ins	6	90039635	-	G	15	52
BRCA	TCGA-A8-A092	FBXL13	SNP	Missense_Mutation	7	102603988	C	T	32	46
BRCA	TCGA-A8-A092	DENND2A	SNP	Silent	7	140225575	G	A	37	25
BRCA	TCGA-A8-A092	DNAH11	SNP	Silent	7	21730485	C	T	29	72
BRCA	TCGA-A8-A092	INHBA	SNP	Silent	7	41729911	G	C	33	37
BRCA	TCGA-A8-A092	AKAP9	SNP	Missense_Mutation	7	91632416	G	A	41	46
BRCA	TCGA-A8-A092	PDK4	SNP	Missense_Mutation	7	95216806	A	C	4	70
BRCA	TCGA-A8-A092	ZHX2	SNP	Missense_Mutation	8	123963911	C	G	32	91
BRCA	TCGA-A8-A092	ZHX2	SNP	Missense_Mutation	8	123964167	C	G	29	83
BRCA	TCGA-A8-A092	SLC31A1	SNP	Missense_Mutation	9	116018517	C	T	29	61
BRCA	TCGA-A8-A092	GLE1	SNP	Nonsense_Mutation	9	131277847	C	T	29	78
BRCA	TCGA-A8-A092	FNBP1	SNP	Splice_Site	9	132689621	C	T	32	98
BRCA	TCGA-A8-A093	NUDT17	SNP	Silent	1	145587798	C	T	29	58
BRCA	TCGA-A8-A093	RPRD2	SNP	Missense_Mutation	1	150444379	G	A	39	49
BRCA	TCGA-A8-A093	LRRC71	SNP	Silent	1	156897417	C	A	31	56
BRCA	TCGA-A8-A093	SPTA1	SNP	Silent	1	158615008	C	T	32	50
BRCA	TCGA-A8-A093	TARBP1	SNP	Splice_site	1	234556558	C	T	30	93
BRCA	TCGA-A8-A093	RGS7	SNP	Missense_Mutation	1	241094034	G	A	39	97
BRCA	TCGA-A8-A093	OR14C36	SNP	Silent	1	248512379	C	T	31	26
BRCA	TCGA-A8-A093	TSSK3	SNP	Missense_Mutation	1	32829406	T	C	60	66
BRCA	TCGA-A8-A093	OSCP1	SNP	Nonsense_Mutation	1	36894016	C	A	24	54
BRCA	TCGA-A8-A093	KTI12	SNP	Missense_Mutation	1	52499148	G	A	40	67
BRCA	TCGA-A8-A093	HEATR8	SNP	Silent	1	55145674	C	T	23	44
BRCA	TCGA-A8-A093	VENTX	SNP	Missense_Mutation	10	135053322	G	A	46	54
BRCA	TCGA-A8-A093	AGAP6	SNP	Missense_Mutation	10	51769464	G	A	45	76
BRCA	TCGA-A8-A093	CDH23	SNP	Missense_Mutation	10	73326622	G	A	39	98
BRCA	TCGA-A8-A093	NDST2	SNP	Missense_Mutation	10	75567527	G	A	39	100
BRCA	TCGA-A8-A093	MAT1A	SNP	Missense_Mutation	10	82034286	C	T	19	81
BRCA	TCGA-A8-A093	SORBS1	SNP	Silent	10	97106171	C	T	32	70
BRCA	TCGA-A8-A093	TECTA	SNP	Silent	11	120989316	G	A	35	72
BRCA	TCGA-A8-A093	SLC3A2	SNP	Missense_Mutation	11	62623767	C	T	31	52
BRCA	TCGA-A8-A093	FOLR4	SNP	Missense_Mutation	11	94039800	G	A	39	53
BRCA	TCGA-A8-A093	AMOTL1	SNP	Missense_Mutation	11	94599217	C	T	26	100
BRCA	TCGA-A8-A093	KCNJ8	SNP	Missense_Mutation	12	21919223	C	T	29	100
BRCA	TCGA-A8-A093	KIAA0528	SNP	Missense_Mutation	12	22671004	G	C	47	99
BRCA	TCGA-A8-A093	IKZF4	SNP	Nonsense_Mutation	12	56428780	C	T	29	58
BRCA	TCGA-A8-A093	VWF	SNP	Missense_Mutation	12	6091094	G	T	44	64
BRCA	TCGA-A8-A093	CD163L1	SNP	Missense_Mutation	12	7522120	G	A	33	46
BRCA	TCGA-A8-A093	RAB20	SNP	Missense_Mutation	13	111176031	C	G	32	52
BRCA	TCGA-A8-A093	SPG20	SNP	Splice_site	13	36878500	C	T	29	46
BRCA	TCGA-A8-A093	FREM2	SNP	Missense_Mutation	13	39425221	A	G	8	61
BRCA	TCGA-A8-A093	AKAP11	SNP	Nonsense_Mutation	13	42876457	C	G	29	76
BRCA	TCGA-A8-A093	STRN3	DEL	In_Frame_Del	14	31374670	TAA	-	53	67
BRCA	TCGA-A8-A093	HEATR5A	SNP	Silent	14	31763187	T	G	54	56
BRCA	TCGA-A8-A093	HEATR5A	SNP	Missense_Mutation	14	31763190	T	C	63	54
BRCA	TCGA-A8-A093	ARG2	SNP	Silent	14	68087661	G	A	45	56
BRCA	TCGA-A8-A093	LTBP2	SNP	Silent	14	74975323	C	T	22	46
BRCA	TCGA-A8-A093	TGM7	SNP	Missense_Mutation	15	43571419	C	T	31	76
BRCA	TCGA-A8-A093	ABCA3	SNP	Silent	16	2345608	G	C	47	57
BRCA	TCGA-A8-A093	CTU2	SNP	Silent	16	88776379	C	T	29	68
BRCA	TCGA-A8-A093	MAP2K4	SNP	Missense_Mutation	17	12028614	G	A	45	98
BRCA	TCGA-A8-A093	NCOR1	SNP	Nonsense_Mutation	17	15989751	G	A	45	92
BRCA	TCGA-A8-A093	NSF	SNP	Missense_Mutation	17	44791323	G	A	45	97
BRCA	TCGA-A8-A093	ITGB3	SNP	Missense_Mutation	17	45361815	C	T	31	97
BRCA	TCGA-A8-A093	DNAH2	SNP	Silent	17	7690336	C	T	31	50
BRCA	TCGA-A8-A093	OSBPL1A	SNP	Silent	18	21745031	C	T	31	36
BRCA	TCGA-A8-A093	SMAD2	SNP	Missense_Mutation	18	45368278	G	C	33	66
BRCA	TCGA-A8-A093	LRRC30	SNP	Silent	18	7232021	G	A	45	47
BRCA	TCGA-A8-A093	ZNF441	SNP	Missense_Mutation	19	11892414	G	C	48	83
BRCA	TCGA-A8-A093	ZNF44	SNP	Nonsense_Mutation	19	12358544	G	A	45	49
BRCA	TCGA-A8-A093	CPAMD8	SNP	Silent	19	17108122	G	T	33	52
BRCA	TCGA-A8-A093	NDUFA13	SNP	Missense_Mutation	19	19626972	T	A	59	45
BRCA	TCGA-A8-A093	ZNF540	SNP	Missense_Mutation	19	38103583	G	A	37	49
BRCA	TCGA-A8-A093	ZNF180	SNP	Nonsense_Mutation	19	44981989	G	A	45	53
BRCA	TCGA-A8-A093	CABP5	SNP	Silent	19	48537515	G	A	41	53
BRCA	TCGA-A8-A093	LILRA4	SNP	Missense_Mutation	19	54849301	G	C	45	51
BRCA	TCGA-A8-A093	ZNF548	SNP	Missense_Mutation	19	57911242	G	C	33	69
BRCA	TCGA-A8-A093	ZNF671	SNP	Silent	19	58231990	G	A	45	49
BRCA	TCGA-A8-A093	ADAMTS10	SNP	Missense_Mutation	19	8651509	C	T	31	61
BRCA	TCGA-A8-A093	MUC16	SNP	Missense_Mutation	19	9073597	C	T	32	60
BRCA	TCGA-A8-A093	SLC5A7	SNP	Silent	2	108609486	G	A	40	32
BRCA	TCGA-A8-A093	GPD2	SNP	Silent	2	157439307	G	A	45	73
BRCA	TCGA-A8-A093	FASTKD2	SNP	Missense_Mutation	2	207639085	C	T	32	89
BRCA	TCGA-A8-A093	PIKFYVE	SNP	Missense_Mutation	2	209163498	C	G	32	85
BRCA	TCGA-A8-A093	PRKAG3	SNP	Missense_Mutation	2	219694753	T	G	57	89
BRCA	TCGA-A8-A093	ASB1	SNP	Silent	2	239353148	C	T	29	74
BRCA	TCGA-A8-A093	TTC7A	SNP	Missense_Mutation	2	47202165	G	A	33	85
BRCA	TCGA-A8-A093	DGUOK	SNP	Nonsense_Mutation	2	74154071	C	T	31	72
BRCA	TCGA-A8-A093	PSMF1	SNP	Silent	20	1099509	G	A	45	57
BRCA	TCGA-A8-A093	SLC24A3	SNP	Missense_Mutation	20	19677522	G	A	45	99
BRCA	TCGA-A8-A093	ZNF337	SNP	Splice_Site	20	25667103	C	G	32	57
BRCA	TCGA-A8-A093	NRK	SNP	Missense_Mutation	23	105139453	G	A	36	94
BRCA	TCGA-A8-A093	PLS3	SNP	Missense_Mutation	23	114844608	G	A	45	71
BRCA	TCGA-A8-A093	LAMP2	SNP	Nonsense_Mutation	23	119589362	G	A	45	49
BRCA	TCGA-A8-A093	ODZ1	SNP	Missense_Mutation	23	123654414	T	G	56	90
BRCA	TCGA-A8-A093	OCRL	SNP	Missense_Mutation	23	128701282	G	A	41	73
BRCA	TCGA-A8-A093	MAGEC3	SNP	Missense_Mutation	23	140969422	A	G	16	49
BRCA	TCGA-A8-A093	FAM120C	SNP	Missense_Mutation	23	54112178	G	A	41	79
BRCA	TCGA-A8-A093	NLGN3	SNP	Missense_Mutation	23	70367894	G	A	38	95
BRCA	TCGA-A8-A093	IMPG2	SNP	Silent	3	100976551	G	A	45	50
BRCA	TCGA-A8-A093	CASR	SNP	Missense_Mutation	3	122003814	G	A	37	85
BRCA	TCGA-A8-A093	HEG1	SNP	Missense_Mutation	3	124746131	C	G	32	57
BRCA	TCGA-A8-A093	WNT7A	SNP	Missense_Mutation	3	13860791	C	T	31	70
BRCA	TCGA-A8-A093	PHC3	SNP	Silent	3	169846805	G	A	35	49
BRCA	TCGA-A8-A093	PIK3CA	SNP	Missense_Mutation	3	178936094	C	A	25	98
BRCA	TCGA-A8-A093	MAP3K13	SNP	Missense_Mutation	3	185181413	G	A	45	100
BRCA	TCGA-A8-A093	GLT8D1	SNP	Missense_Mutation	3	52730613	T	G	64	50
BRCA	TCGA-A8-A093	LHFPL4	SNP	Silent	3	9547748	G	A	37	50
BRCA	TCGA-A8-A093	NDST3	SNP	Missense_Mutation	4	118975607	C	T	24	100
BRCA	TCGA-A8-A093	FAT4	SNP	Missense_Mutation	4	126370964	G	C	33	66
BRCA	TCGA-A8-A093	SMARCA5	SNP	Nonsense_Mutation	4	144468591	C	T	29	100
BRCA	TCGA-A8-A093	PRMT10	SNP	Nonsense_Mutation	4	148559724	G	A	45	62
BRCA	TCGA-A8-A093	LRP2BP	SNP	Silent	4	186291965	G	A	37	47
BRCA	TCGA-A8-A093	C4orf19	SNP	Missense_Mutation	4	37591780	G	A	45	82
BRCA	TCGA-A8-A093	KLHL5	SNP	Missense_Mutation	4	39064478	G	A	37	61
BRCA	TCGA-A8-A093	USO1	SNP	Silent	4	76695834	C	G	32	51
BRCA	TCGA-A8-A093	FRAS1	SNP	Missense_Mutation	4	79351561	G	A	37	65
BRCA	TCGA-A8-A093	PTPN13	SNP	Nonsense_Mutation	4	87720273	G	T	33	64
BRCA	TCGA-A8-A093	RAP1GDS1	SNP	Missense_Mutation	4	99325751	A	G	4	89
BRCA	TCGA-A8-A093	ADAMTS19	SNP	Missense_Mutation	5	129001204	T	A	59	75
BRCA	TCGA-A8-A093	PCDHB7	SNP	Silent	5	140553379	C	G	21	44
BRCA	TCGA-A8-A093	PCDHB14	SNP	Silent	5	140604697	G	A	40	43
BRCA	TCGA-A8-A093	PCDHGA6	SNP	Missense_Mutation	5	140753661	C	T	23	52
BRCA	TCGA-A8-A093	SOX30	SNP	Missense_Mutation	5	157078243	C	T	32	60
BRCA	TCGA-A8-A093	FBXL7	SNP	Silent	5	15928150	G	T	37	48
BRCA	TCGA-A8-A093	COL10A1	SNP	Missense_Mutation	6	116442021	G	A	33	55
BRCA	TCGA-A8-A093	SERINC1	DEL	In_Frame_Del	6	122774991	AAG	-	13	53
BRCA	TCGA-A8-A093	GPR126	SNP	Missense_Mutation	6	142721681	G	A	45	54
BRCA	TCGA-A8-A093	MSH5	SNP	Silent	6	31708270	G	A	41	57
BRCA	TCGA-A8-A093	PSMB8	SNP	Missense_Mutation	6	32809404	G	A	37	59
BRCA	TCGA-A8-A093	FZD9	SNP	Silent	7	72849171	G	A	38	49
BRCA	TCGA-A8-A093	COL28A1	SNP	Missense_Mutation	7	7412809	G	A	37	70
BRCA	TCGA-A8-A093	SAMD9L	SNP	Missense_Mutation	7	92764927	C	G	29	52
BRCA	TCGA-A8-A093	PPP1R9A	SNP	Nonsense_Mutation	7	94919430	C	T	23	66
BRCA	TCGA-A8-A093	SLC25A13	SNP	Missense_Mutation	7	95820474	C	G	32	87
BRCA	TCGA-A8-A093	WISP1	SNP	Silent	8	134225361	G	C	37	59
BRCA	TCGA-A8-A093	PTK2B	SNP	Silent	8	27288485	C	T	31	34
BRCA	TCGA-A8-A093	ASH2L	SNP	Silent	8	37967942	C	T	32	43
BRCA	TCGA-A8-A093	DDHD2	SNP	Missense_Mutation	8	38117635	A	G	7	66
BRCA	TCGA-A8-A093	KAT6A	SNP	Missense_Mutation	8	41792232	C	T	31	96
BRCA	TCGA-A8-A093	WWP1	SNP	Missense_Mutation	8	87460386	C	T	29	100
BRCA	TCGA-A8-A093	MUSK	SNP	Splice_site	9	113547808	G	A	33	97
BRCA	TCGA-A8-A093	SET	SNP	Splice_Site	9	131453448	G	A	33	79
BRCA	TCGA-A8-A093	KCNT1	SNP	Missense_Mutation	9	138646986	G	A	41	70
BRCA	TCGA-A8-A093	NOL6	SNP	Missense_Mutation	9	33466347	C	T	23	64
BRCA	TCGA-A8-A094	PRAMEF10	SNP	Silent	1	12954599	C	G	29	51
BRCA	TCGA-A8-A094	GOLPH3L	SNP	Silent	1	150621202	T	C	52	73
BRCA	TCGA-A8-A094	LINGO4	SNP	Missense_Mutation	1	151773745	C	T	32	74
BRCA	TCGA-A8-A094	RPTN	SNP	Missense_Mutation	1	152129240	T	C	56	47
BRCA	TCGA-A8-A094	C1orf85	SNP	Nonsense_Mutation	1	156264264	C	T	30	80
BRCA	TCGA-A8-A094	ATP1A4	SNP	Missense_Mutation	1	160121908	C	G	29	37
BRCA	TCGA-A8-A094	ATF6	SNP	Nonsense_Mutation	1	161771862	C	T	29	70
BRCA	TCGA-A8-A094	MAEL	SNP	Silent	1	166985513	G	A	33	74
BRCA	TCGA-A8-A094	METTL13	SNP	Silent	1	171765635	C	T	29	49
BRCA	TCGA-A8-A094	GLT25D2	SNP	Silent	1	183938428	G	C	33	64
BRCA	TCGA-A8-A094	FAM5C	SNP	Missense_Mutation	1	190234086	G	A	40	81
BRCA	TCGA-A8-A094	ASPM	DEL	Frame_Shift_Del	1	197070460	TTATT	-	56	53
BRCA	TCGA-A8-A094	SYT2	SNP	Missense_Mutation	1	202571103	C	G	30	100
BRCA	TCGA-A8-A094	SLC26A9	SNP	Missense_Mutation	1	205904876	C	G	29	87
BRCA	TCGA-A8-A094	SLC26A9	SNP	Missense_Mutation	1	205904946	C	T	29	87
BRCA	TCGA-A8-A094	OBSCN	DEL	Frame_Shift_Del	1	228491624	AC	-	14	60
BRCA	TCGA-A8-A094	HEATR1	SNP	Missense_Mutation	1	236748383	C	T	32	56
BRCA	TCGA-A8-A094	ZP4	SNP	Splice_site	1	238046042	G	A	39	54
BRCA	TCGA-A8-A094	MACF1	SNP	Missense_Mutation	1	39916733	G	T	36	57
BRCA	TCGA-A8-A094	CC2D1B	SNP	Missense_Mutation	1	52824025	G	A	39	50
BRCA	TCGA-A8-A094	HEATR8	SNP	Missense_Mutation	1	55158189	T	C	51	68
BRCA	TCGA-A8-A094	BRDT	SNP	Missense_Mutation	1	92443818	G	A	33	76
BRCA	TCGA-A8-A094	MTF2	SNP	Missense_Mutation	1	93599740	C	G	30	97
BRCA	TCGA-A8-A094	ABCA4	SNP	Silent	1	94577116	C	T	31	50
BRCA	TCGA-A8-A094	UPF2	SNP	Silent	10	12071466	T	C	62	50
BRCA	TCGA-A8-A094	TRDMT1	SNP	Missense_Mutation	10	17199723	C	G	32	59
BRCA	TCGA-A8-A094	ANKRD26	SNP	Missense_Mutation	10	27324347	G	C	33	67
BRCA	TCGA-A8-A094	ZNF33B	SNP	Missense_Mutation	10	43127865	G	A	45	52
BRCA	TCGA-A8-A094	MAPK8	SNP	Missense_Mutation	10	49618209	C	T	31	72
BRCA	TCGA-A8-A094	ZWINT	SNP	Missense_Mutation	10	58119265	G	T	46	48
BRCA	TCGA-A8-A094	PLA2G12B	SNP	Silent	10	74702434	G	A	41	60
BRCA	TCGA-A8-A094	DYDC2	SNP	Splice_Site	10	82122706	G	C	33	64
BRCA	TCGA-A8-A094	FAM190B	SNP	Missense_Mutation	10	86273469	A	T	14	60
BRCA	TCGA-A8-A094	PDE3B	SNP	Silent	11	14865386	A	G	9	50
BRCA	TCGA-A8-A094	INCENP	SNP	Missense_Mutation	11	61897510	A	G	12	55
BRCA	TCGA-A8-A094	TAS2R19	SNP	Missense_Mutation	12	11175145	G	A	45	46
BRCA	TCGA-A8-A094	UNC119B	SNP	Missense_Mutation	12	121154503	T	A	62	93
BRCA	TCGA-A8-A094	PPHLN1	SNP	Missense_Mutation	12	42781327	C	A	32	82
BRCA	TCGA-A8-A094	AKAP3	SNP	Missense_Mutation	12	4737716	C	G	23	49
BRCA	TCGA-A8-A094	FAM186B	SNP	Missense_Mutation	12	49994808	C	A	29	51
BRCA	TCGA-A8-A094	KCNA1	SNP	Missense_Mutation	12	5020629	G	A	37	82
BRCA	TCGA-A8-A094	NCKAP1L	SNP	Missense_Mutation	12	54914999	G	A	45	95
BRCA	TCGA-A8-A094	ITGA7	SNP	Missense_Mutation	12	56082684	C	G	29	68
BRCA	TCGA-A8-A094	ITGA7	SNP	Missense_Mutation	12	56096685	G	A	37	76
BRCA	TCGA-A8-A094	BAZ2A	SNP	Missense_Mutation	12	57006975	A	C	7	77
BRCA	TCGA-A8-A094	GLI1	SNP	Missense_Mutation	12	57859009	C	G	29	61
BRCA	TCGA-A8-A094	PIP4K2C	SNP	Missense_Mutation	12	57994184	G	C	33	67
BRCA	TCGA-A8-A094	PLEKHG6	SNP	Missense_Mutation	12	6436478	G	A	33	64
BRCA	TCGA-A8-A094	LEMD3	DEL	Frame_Shift_Del	12	65564185	C	-	26	57
BRCA	TCGA-A8-A094	LAG3	SNP	Silent	12	6882449	C	T	30	53
BRCA	TCGA-A8-A094	CDCA3	SNP	Missense_Mutation	12	6958758	G	A	45	50
BRCA	TCGA-A8-A094	USP5	SNP	Missense_Mutation	12	6961446	G	A	37	69
BRCA	TCGA-A8-A094	USP5	SNP	Missense_Mutation	12	6967614	G	C	33	71
BRCA	TCGA-A8-A094	ACSS3	DEL	Frame_Shift_Del	12	81568684	GGGGCAGCTTTGGG	-	47	67
BRCA	TCGA-A8-A094	TMCC3	SNP	Missense_Mutation	12	94975947	G	C	33	61
BRCA	TCGA-A8-A094	UTP14C	SNP	Missense_Mutation	13	52604942	A	C	16	57
BRCA	TCGA-A8-A094	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-A8-A094	OR4N2	SNP	Missense_Mutation	14	20296308	A	G	2	48
BRCA	TCGA-A8-A094	MDGA2	SNP	Missense_Mutation	14	47342770	G	A	45	94
BRCA	TCGA-A8-A094	SAMD4A	SNP	Missense_Mutation	14	55168944	G	A	41	89
BRCA	TCGA-A8-A094	EXOC5	SNP	Missense_Mutation	14	57714369	G	C	33	98
BRCA	TCGA-A8-A094	SYNE2	SNP	Silent	14	64488685	C	T	29	70
BRCA	TCGA-A8-A094	SYNE2	SNP	Silent	14	64494451	C	T	29	54
BRCA	TCGA-A8-A094	SYNE2	SNP	Missense_Mutation	14	64497798	C	A	30	80
BRCA	TCGA-A8-A094	UNC79	SNP	Missense_Mutation	14	94087993	G	A	33	99
BRCA	TCGA-A8-A094	SERPINA12	SNP	Missense_Mutation	14	94962895	C	T	29	98
BRCA	TCGA-A8-A094	CASC5	SNP	Missense_Mutation	15	40943718	G	C	33	58
BRCA	TCGA-A8-A094	CAPN3	SNP	Splice_site	15	42681294	T	C	51	56
BRCA	TCGA-A8-A094	FBN1	SNP	Missense_Mutation	15	48720661	A	T	8	44
BRCA	TCGA-A8-A094	DMXL2	SNP	Splice_site	15	51778534	C	A	18	100
BRCA	TCGA-A8-A094	SNX33	SNP	Silent	15	75949547	C	T	17	54
BRCA	TCGA-A8-A094	FANCI	SNP	Splice_Site	15	89843030	G	C	33	99
BRCA	TCGA-A8-A094	ABCC1	SNP	Silent	16	16108413	C	T	29	53
BRCA	TCGA-A8-A094	DNAH3	SNP	Missense_Mutation	16	21042410	A	T	4	92
BRCA	TCGA-A8-A094	PLK1	SNP	Missense_Mutation	16	23693394	G	C	48	61
BRCA	TCGA-A8-A094	SEZ6L2	SNP	Missense_Mutation	16	29898983	C	T	29	81
BRCA	TCGA-A8-A094	LOC100288951	SNP	Missense_Mutation	16	31173336	C	G	32	78
BRCA	TCGA-A8-A094	PPL	SNP	Silent	16	4934651	C	T	32	49
BRCA	TCGA-A8-A094	CBFB	SNP	Splice_Site	16	67100703	T	C	57	89
BRCA	TCGA-A8-A094	FTSJD1	DEL	Frame_Shift_Del	16	71317656	T	-	55	89
BRCA	TCGA-A8-A094	CDH13	SNP	Missense_Mutation	16	83704566	T	C	62	74
BRCA	TCGA-A8-A094	TRIM16	SNP	Splice_Site	17	15535029	C	G	32	81
BRCA	TCGA-A8-A094	SMCR8	SNP	Silent	17	18219650	T	C	56	55
BRCA	TCGA-A8-A094	GH2	SNP	Missense_Mutation	17	61958402	G	A	40	53
BRCA	TCGA-A8-A094	TTYH2	SNP	Silent	17	72245191	G	A	45	61
BRCA	TCGA-A8-A094	TP53	DEL	Frame_Shift_Del	17	7578222	TC	-	62	47
BRCA	TCGA-A8-A094	DNAH2	SNP	Missense_Mutation	17	7736526	G	C	33	68
BRCA	TCGA-A8-A094	SMAD4	DEL	Frame_Shift_Del	18	48586275	C	-	30	99
BRCA	TCGA-A8-A094	ZFP161	SNP	Missense_Mutation	18	5291339	C	T	24	78
BRCA	TCGA-A8-A094	CACNA1A	SNP	Silent	19	13339552	G	A	37	66
BRCA	TCGA-A8-A094	IL27RA	SNP	Missense_Mutation	19	14161686	C	T	29	49
BRCA	TCGA-A8-A094	MYO9B	SNP	Missense_Mutation	19	17212831	G	A	41	60
BRCA	TCGA-A8-A094	LOC100287226	SNP	Missense_Mutation	19	22498923	C	A	29	80
BRCA	TCGA-A8-A094	CEP89	SNP	Silent	19	33424376	C	T	32	55
BRCA	TCGA-A8-A094	HAMP	SNP	Missense_Mutation	19	35775852	G	C	33	52
BRCA	TCGA-A8-A094	ZNF45	SNP	Nonsense_Mutation	19	44417544	G	A	37	54
BRCA	TCGA-A8-A094	ZNF350	SNP	Nonsense_Mutation	19	52468721	G	A	45	51
BRCA	TCGA-A8-A094	ZNF415	SNP	Missense_Mutation	19	53612688	T	C	59	50
BRCA	TCGA-A8-A094	ZIM3	SNP	Missense_Mutation	19	57647337	G	C	33	49
BRCA	TCGA-A8-A094	DUXA	SNP	Missense_Mutation	19	57669826	C	T	23	56
BRCA	TCGA-A8-A094	ZNF772	SNP	Missense_Mutation	19	57985633	G	T	34	58
BRCA	TCGA-A8-A094	C3	SNP	Silent	19	6711199	C	T	31	3
BRCA	TCGA-A8-A094	OR7D2	SNP	Silent	19	9296715	G	A	33	29
BRCA	TCGA-A8-A094	MRPS9	SNP	Splice_Site	2	105665628	G	C	33	87
BRCA	TCGA-A8-A094	TMEM87B	SNP	Nonstop_Mutation	2	112873718	T	C	59	74
BRCA	TCGA-A8-A094	ZRANB3	SNP	Missense_Mutation	2	135988439	C	A	32	52
BRCA	TCGA-A8-A094	SMC6	DEL	Frame_Shift_Del	2	17906553	TTCT	-	60	83
BRCA	TCGA-A8-A094	HECW2	SNP	Missense_Mutation	2	197183563	C	G	17	66
BRCA	TCGA-A8-A094	GLB1L	SNP	Missense_Mutation	2	220104395	C	T	29	100
BRCA	TCGA-A8-A094	EPHA4	SNP	Missense_Mutation	2	222365820	G	C	33	100
BRCA	TCGA-A8-A094	FAM179A	SNP	Missense_Mutation	2	29268249	G	T	44	46
BRCA	TCGA-A8-A094	C2orf71	SNP	Missense_Mutation	2	29296746	C	T	32	60
BRCA	TCGA-A8-A094	NLRC4	SNP	Silent	2	32475388	G	A	40	32
BRCA	TCGA-A8-A094	CCT4	SNP	Silent	2	62104097	C	T	32	62
BRCA	TCGA-A8-A094	SLC4A5	SNP	Missense_Mutation	2	74452135	G	C	33	50
BRCA	TCGA-A8-A094	C2orf68	SNP	Nonsense_Mutation	2	85836560	G	A	45	75
BRCA	TCGA-A8-A094	NCOA6	SNP	Missense_Mutation	20	33345176	G	C	45	86
BRCA	TCGA-A8-A094	SAMHD1	SNP	Missense_Mutation	20	35555629	C	G	29	100
BRCA	TCGA-A8-A094	STK4	SNP	Missense_Mutation	20	43703693	G	C	35	85
BRCA	TCGA-A8-A094	PIGT	SNP	Silent	20	44045206	G	A	36	75
BRCA	TCGA-A8-A094	CHGB	SNP	Missense_Mutation	20	5903764	G	A	35	56
BRCA	TCGA-A8-A094	DYRK1A	SNP	Missense_Mutation	21	38884518	C	T	32	97
BRCA	TCGA-A8-A094	PARVB	SNP	Silent	22	44514987	C	T	24	60
BRCA	TCGA-A8-A094	TBC1D22A	SNP	Missense_Mutation	22	47308069	A	G	8	49
BRCA	TCGA-A8-A094	GABRE	SNP	Missense_Mutation	23	151130931	C	T	27	80
BRCA	TCGA-A8-A094	PHKA2	SNP	Missense_Mutation	23	18913260	C	T	31	56
BRCA	TCGA-A8-A094	MBTPS2	SNP	Silent	23	21871596	C	G	30	49
BRCA	TCGA-A8-A094	FAM48B2	SNP	Missense_Mutation	23	24329586	G	A	45	51
BRCA	TCGA-A8-A094	PIM2	SNP	Silent	23	48775085	C	G	30	53
BRCA	TCGA-A8-A094	KDM5C	SNP	Missense_Mutation	23	53240703	T	G	60	53
BRCA	TCGA-A8-A094	ITIH6	SNP	Missense_Mutation	23	54781528	C	T	30	48
BRCA	TCGA-A8-A094	HDHD1	SNP	Missense_Mutation	23	7023816	C	T	28	63
BRCA	TCGA-A8-A094	SIDT1	SNP	Missense_Mutation	3	113302310	G	C	33	84
BRCA	TCGA-A8-A094	ROPN1	SNP	Missense_Mutation	3	123694377	C	T	32	77
BRCA	TCGA-A8-A094	WNT7A	SNP	Missense_Mutation	3	13860570	C	A	17	96
BRCA	TCGA-A8-A094	BTD	SNP	Missense_Mutation	3	15686759	C	G	32	56
BRCA	TCGA-A8-A094	SMC4	SNP	Missense_Mutation	3	160119723	G	C	45	72
BRCA	TCGA-A8-A094	TRNT1	SNP	Missense_Mutation	3	3189137	T	C	61	89
BRCA	TCGA-A8-A094	ANO10	SNP	Missense_Mutation	3	43640099	C	G	29	91
BRCA	TCGA-A8-A094	BSN	SNP	Nonsense_Mutation	3	49695519	A	T	9	92
BRCA	TCGA-A8-A094	PDE5A	SNP	Silent	4	120432238	A	G	12	51
BRCA	TCGA-A8-A094	SLAIN2	SNP	Missense_Mutation	4	48371964	T	C	60	70
BRCA	TCGA-A8-A094	TMPRSS11A	SNP	Missense_Mutation	4	68784731	C	G	29	44
BRCA	TCGA-A8-A094	MRPL1	SNP	Missense_Mutation	4	78873708	C	T	30	59
BRCA	TCGA-A8-A094	FGF5	SNP	Silent	4	81188146	C	T	24	51
BRCA	TCGA-A8-A094	LIN54	SNP	Missense_Mutation	4	83849430	T	C	62	94
BRCA	TCGA-A8-A094	PCDHB4	SNP	Missense_Mutation	5	140503220	G	A	38	53
BRCA	TCGA-A8-A094	PCDHB12	SNP	Missense_Mutation	5	140588724	G	C	43	96
BRCA	TCGA-A8-A094	PCDHGB5	SNP	Silent	5	140779191	T	C	56	52
BRCA	TCGA-A8-A094	PCDHGB6	SNP	Missense_Mutation	5	140789141	G	A	40	47
BRCA	TCGA-A8-A094	PCDHGA10	SNP	Silent	5	140795061	C	A	32	61
BRCA	TCGA-A8-A094	LARP1	SNP	Missense_Mutation	5	154185485	G	T	48	100
BRCA	TCGA-A8-A094	ADAMTS12	SNP	Missense_Mutation	5	33576371	C	T	32	48
BRCA	TCGA-A8-A094	SPEF2	SNP	Silent	5	35740104	G	A	45	52
BRCA	TCGA-A8-A094	ITGA2	SNP	Silent	5	52363035	C	T	29	52
BRCA	TCGA-A8-A094	BDP1	SNP	Missense_Mutation	5	70806172	G	A	45	53
BRCA	TCGA-A8-A094	ARRDC3	SNP	Missense_Mutation	5	90669934	C	T	29	100
BRCA	TCGA-A8-A094	WASF1	SNP	Missense_Mutation	6	110426631	G	T	47	92
BRCA	TCGA-A8-A094	UTRN	SNP	Missense_Mutation	6	144835162	G	C	33	72
BRCA	TCGA-A8-A094	DSP	SNP	Nonsense_Mutation	6	7567629	C	T	29	100
BRCA	TCGA-A8-A094	FBXL13	SNP	Missense_Mutation	7	102665560	C	T	29	51
BRCA	TCGA-A8-A094	FAM131B	SNP	Silent	7	143054099	T	G	59	49
BRCA	TCGA-A8-A094	MLL3	DEL	Frame_Shift_Del	7	151859301	AGATGACTTTT	-	3	49
BRCA	TCGA-A8-A094	RBM33	SNP	Missense_Mutation	7	155473535	A	G	11	66
BRCA	TCGA-A8-A094	MPP6	SNP	Missense_Mutation	7	24681452	G	A	33	100
BRCA	TCGA-A8-A094	EGFR	SNP	Missense_Mutation	7	55221800	G	A	37	59
BRCA	TCGA-A8-A094	CCT6A	SNP	Missense_Mutation	7	56128610	G	A	45	99
BRCA	TCGA-A8-A094	KIAA1324L	SNP	Missense_Mutation	7	86547849	G	C	33	97
BRCA	TCGA-A8-A094	CCDC132	SNP	Missense_Mutation	7	92979203	G	T	36	87
BRCA	TCGA-A8-A094	PPP1R9A	SNP	Missense_Mutation	7	94917854	G	A	45	98
BRCA	TCGA-A8-A094	RIMS2	SNP	Missense_Mutation	8	105010426	C	G	32	80
BRCA	TCGA-A8-A094	SYBU	SNP	Silent	8	110590147	C	G	29	60
BRCA	TCGA-A8-A094	COL14A1	SNP	Missense_Mutation	8	121180436	G	C	33	60
BRCA	TCGA-A8-A094	FAM91A1	SNP	Missense_Mutation	8	124799973	C	G	32	75
BRCA	TCGA-A8-A094	MYOM2	SNP	Missense_Mutation	8	2000312	G	C	45	44
BRCA	TCGA-A8-A094	EGR3	SNP	Silent	8	22548604	C	T	19	52
BRCA	TCGA-A8-A094	NUGGC	SNP	Missense_Mutation	8	27886887	C	G	29	77
BRCA	TCGA-A8-A094	CSMD1	SNP	Silent	8	3245053	C	T	30	51
BRCA	TCGA-A8-A094	TTI2	SNP	Missense_Mutation	8	33361052	T	A	54	73
BRCA	TCGA-A8-A094	MOS	SNP	Missense_Mutation	8	57025782	C	G	32	97
BRCA	TCGA-A8-A094	RRS1	DEL	In_Frame_Del	8	67342428	AGG	-	3	61
BRCA	TCGA-A8-A094	TMEM67	SNP	Missense_Mutation	8	94784835	G	C	33	86
BRCA	TCGA-A8-A094	GRIN3A	SNP	Silent	9	104341570	A	G	1	58
BRCA	TCGA-A8-A094	RC3H2	SNP	Nonsense_Mutation	9	125618153	G	C	45	84
BRCA	TCGA-A8-A094	ZBTB6	SNP	Nonsense_Mutation	9	125673289	G	A	45	86
BRCA	TCGA-A8-A094	ZBTB6	SNP	Missense_Mutation	9	125673973	G	C	33	51
BRCA	TCGA-A8-A094	ZBTB6	SNP	Missense_Mutation	9	125674188	G	C	41	98
BRCA	TCGA-A8-A094	ABL1	SNP	Missense_Mutation	9	133753849	T	C	61	90
BRCA	TCGA-A8-A094	SETX	SNP	Missense_Mutation	9	135201859	T	G	64	62
BRCA	TCGA-A8-A094	CACNA1B	SNP	Missense_Mutation	9	140880937	C	G	32	68
BRCA	TCGA-A8-A094	PTPRD	SNP	Missense_Mutation	9	8449827	C	G	32	98
BRCA	TCGA-A8-A094	LOC286238	SNP	Missense_Mutation	9	91262447	A	C	13	49
BRCA	TCGA-A8-A094	ERCC6L2	SNP	Silent	9	98669392	C	G	32	51
BRCA	TCGA-A8-A095	PRMT6	SNP	Missense_Mutation	1	107599767	G	C	33	80
BRCA	TCGA-A8-A095	WDR3	SNP	Missense_Mutation	1	118495209	C	T	29	100
BRCA	TCGA-A8-A095	NBPF7	SNP	Missense_Mutation	1	120384173	C	G	24	53
BRCA	TCGA-A8-A095	S100A1	SNP	Missense_Mutation	1	153603056	C	T	31	92
BRCA	TCGA-A8-A095	FCRL4	SNP	Silent	1	157557674	G	A	45	41
BRCA	TCGA-A8-A095	MR1	SNP	Missense_Mutation	1	181024397	G	A	37	45
BRCA	TCGA-A8-A095	UBR4	SNP	Missense_Mutation	1	19430614	C	T	30	78
BRCA	TCGA-A8-A095	ARID4B	SNP	Missense_Mutation	1	235357486	G	C	33	89
BRCA	TCGA-A8-A095	KIF26B	SNP	Missense_Mutation	1	245530320	C	T	31	83
BRCA	TCGA-A8-A095	TRNAU1AP	SNP	Nonsense_Mutation	1	28880170	G	T	45	87
BRCA	TCGA-A8-A095	GPBP1L1	SNP	Missense_Mutation	1	46108107	C	G	30	70
BRCA	TCGA-A8-A095	JAK1	SNP	Missense_Mutation	1	65313316	C	A	21	96
BRCA	TCGA-A8-A095	DNAJC11	SNP	Missense_Mutation	1	6727814	C	G	32	63
BRCA	TCGA-A8-A095	CTH	SNP	Nonsense_Mutation	1	70890019	G	T	45	52
BRCA	TCGA-A8-A095	ZNHIT6	SNP	Silent	1	86123612	C	T	29	83
BRCA	TCGA-A8-A095	PNLIPRP1	SNP	Missense_Mutation	10	118352049	G	A	46	74
BRCA	TCGA-A8-A095	FAM188A	SNP	Missense_Mutation	10	15828635	C	T	29	87
BRCA	TCGA-A8-A095	ARHGAP21	SNP	Missense_Mutation	10	24874831	C	T	29	65
BRCA	TCGA-A8-A095	CCDC7	SNP	Silent	10	32856783	A	G	10	58
BRCA	TCGA-A8-A095	ZFAND4	SNP	Silent	10	46122005	C	T	29	44
BRCA	TCGA-A8-A095	VSTM4	SNP	Missense_Mutation	10	50311891	G	C	41	52
BRCA	TCGA-A8-A095	IPMK	SNP	Missense_Mutation	10	59997544	C	G	29	56
BRCA	TCGA-A8-A095	TNKS1BP1	SNP	Missense_Mutation	11	57088085	G	A	37	58
BRCA	TCGA-A8-A095	OR52N2	SNP	Silent	11	5841832	C	T	29	53
BRCA	TCGA-A8-A095	OSBP	SNP	Missense_Mutation	11	59367985	G	C	33	85
BRCA	TCGA-A8-A095	DAK	SNP	Silent	11	61106623	C	T	29	51
BRCA	TCGA-A8-A095	RBM14	SNP	Missense_Mutation	11	66391892	C	G	32	68
BRCA	TCGA-A8-A095	RBM14	SNP	Missense_Mutation	11	66392021	C	G	32	72
BRCA	TCGA-A8-A095	HECTD4	SNP	Missense_Mutation	12	112691858	C	G	32	97
BRCA	TCGA-A8-A095	GLT1D1	SNP	Silent	12	129383811	G	A	35	74
BRCA	TCGA-A8-A095	SLCO1A2	SNP	Silent	12	21453307	C	T	32	50
BRCA	TCGA-A8-A095	GPD1	SNP	Missense_Mutation	12	50503243	G	A	37	60
BRCA	TCGA-A8-A095	LIMA1	SNP	Missense_Mutation	12	50598427	C	G	30	82
BRCA	TCGA-A8-A095	ENSG00000226997	DEL	Frame_Shift_Del	12	57390859	AC	-	2	52
BRCA	TCGA-A8-A095	SACS	SNP	Missense_Mutation	13	23911264	G	C	45	98
BRCA	TCGA-A8-A095	RB1	SNP	Nonsense_Mutation	13	49050906	G	T	45	96
BRCA	TCGA-A8-A095	WDFY2	SNP	Missense_Mutation	13	52329500	G	A	45	82
BRCA	TCGA-A8-A095	IGHV3-6	SNP	Silent	14	106829998	G	C	41	50
BRCA	TCGA-A8-A095	CASC5	SNP	Silent	15	40917571	G	A	45	56
BRCA	TCGA-A8-A095	TP53BP1	SNP	Missense_Mutation	15	43724569	C	G	29	23
BRCA	TCGA-A8-A095	CGNL1	SNP	Silent	15	57746010	G	A	45	55
BRCA	TCGA-A8-A095	CA12	SNP	Silent	15	63638802	G	A	45	28
BRCA	TCGA-A8-A095	LMAN1L	SNP	Missense_Mutation	15	75116744	C	T	31	52
BRCA	TCGA-A8-A095	PRKCB	SNP	Silent	16	24043543	C	T	29	53
BRCA	TCGA-A8-A095	FBXL19	SNP	Missense_Mutation	16	30941589	G	A	37	75
BRCA	TCGA-A8-A095	N4BP1	SNP	Missense_Mutation	16	48576901	C	G	32	70
BRCA	TCGA-A8-A095	PPL	SNP	Silent	16	4954017	G	T	37	63
BRCA	TCGA-A8-A095	PRPF8	SNP	Missense_Mutation	17	1580966	C	A	26	98
BRCA	TCGA-A8-A095	ASPA	SNP	Nonsense_Mutation	17	3392582	C	T	29	62
BRCA	TCGA-A8-A095	KRT35	SNP	Silent	17	39637326	G	T	39	40
BRCA	TCGA-A8-A095	SLC2A4	SNP	Splice_site	17	7186564	G	C	41	81
BRCA	TCGA-A8-A095	RNF213	SNP	Missense_Mutation	17	78321847	G	A	43	53
BRCA	TCGA-A8-A095	RPH3AL	SNP	Nonsense_Mutation	17	96983	G	A	39	58
BRCA	TCGA-A8-A095	ZNF443	SNP	Missense_Mutation	19	12541839	G	C	45	83
BRCA	TCGA-A8-A095	ZNF43	SNP	Missense_Mutation	19	21990459	C	G	32	50
BRCA	TCGA-A8-A095	TJP3	SNP	Missense_Mutation	19	3734343	C	T	31	75
BRCA	TCGA-A8-A095	FCGBP	SNP	Missense_Mutation	19	40424194	C	T	26	53
BRCA	TCGA-A8-A095	CREB3L3	SNP	Missense_Mutation	19	4154928	C	G	31	39
BRCA	TCGA-A8-A095	ZNF616	SNP	Missense_Mutation	19	52619379	G	C	41	27
BRCA	TCGA-A8-A095	DUXA	SNP	Missense_Mutation	19	57672085	G	C	45	50
BRCA	TCGA-A8-A095	ZNF324	SNP	Silent	19	58982714	C	T	19	50
BRCA	TCGA-A8-A095	GTF2F1	SNP	Silent	19	6380409	G	C	47	58
BRCA	TCGA-A8-A095	ZNF266	SNP	Silent	19	9524014	G	A	45	53
BRCA	TCGA-A8-A095	ZNF266	SNP	Missense_Mutation	19	9524258	G	T	41	47
BRCA	TCGA-A8-A095	SCN9A	SNP	Missense_Mutation	2	167138306	G	C	45	76
BRCA	TCGA-A8-A095	TTN	SNP	Missense_Mutation	2	179467114	G	C	33	60
BRCA	TCGA-A8-A095	GPR1	SNP	Missense_Mutation	2	207041528	A	T	12	61
BRCA	TCGA-A8-A095	NCL	SNP	Missense_Mutation	2	232326353	C	T	29	62
BRCA	TCGA-A8-A095	PER2	SNP	Silent	2	239164479	G	A	45	45
BRCA	TCGA-A8-A095	LTBP1	SNP	Silent	2	33590449	G	C	45	57
BRCA	TCGA-A8-A095	BCL11A	SNP	Silent	2	60689483	G	A	40	69
BRCA	TCGA-A8-A095	NDUFAF5	SNP	Missense_Mutation	20	13797576	G	A	45	90
BRCA	TCGA-A8-A095	SIRPG	SNP	Missense_Mutation	20	1617134	C	T	19	43
BRCA	TCGA-A8-A095	TMEM50B	SNP	Missense_Mutation	21	34832793	G	A	45	67
BRCA	TCGA-A8-A095	LCA5L	SNP	Missense_Mutation	21	40792688	G	C	45	52
BRCA	TCGA-A8-A095	UBASH3A	SNP	Silent	21	43862566	C	G	29	65
BRCA	TCGA-A8-A095	EIF4ENIF1	SNP	Missense_Mutation	22	31839047	G	A	37	81
BRCA	TCGA-A8-A095	MAGEB1	SNP	Silent	23	30269534	G	A	45	53
BRCA	TCGA-A8-A095	AKAP4	SNP	Silent	23	49958365	G	A	45	47
BRCA	TCGA-A8-A095	WNK3	SNP	Missense_Mutation	23	54263737	G	C	33	61
BRCA	TCGA-A8-A095	KAL1	SNP	Silent	23	8553429	G	A	40	43
BRCA	TCGA-A8-A095	PIK3CA	SNP	Missense_Mutation	3	178938934	G	A	45	98
BRCA	TCGA-A8-A095	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-A8-A095	SFMBT1	SNP	Nonsense_Mutation	3	52947576	G	T	45	100
BRCA	TCGA-A8-A095	SEC24B	SNP	Nonsense_Mutation	4	110460811	C	T	29	96
BRCA	TCGA-A8-A095	TIFA	SNP	Missense_Mutation	4	113199522	C	G	32	56
BRCA	TCGA-A8-A095	KLB	SNP	Silent	4	39448147	C	T	32	100
BRCA	TCGA-A8-A095	KIT	SNP	Missense_Mutation	4	55561727	C	G	30	76
BRCA	TCGA-A8-A095	KDR	SNP	Missense_Mutation	4	55953837	G	T	41	94
BRCA	TCGA-A8-A095	LIN54	SNP	Missense_Mutation	4	83905831	G	C	33	79
BRCA	TCGA-A8-A095	TIGD6	SNP	Silent	5	149375540	C	T	29	49
BRCA	TCGA-A8-A095	KIF4B	SNP	Missense_Mutation	5	154395982	G	A	41	77
BRCA	TCGA-A8-A095	SLC34A1	SNP	Missense_Mutation	5	176821143	A	C	2	79
BRCA	TCGA-A8-A095	ROS1	SNP	Missense_Mutation	6	117709171	C	T	29	55
BRCA	TCGA-A8-A095	MYB	SNP	Missense_Mutation	6	135515566	G	A	37	100
BRCA	TCGA-A8-A095	SYNE1	SNP	Nonsense_Mutation	6	152453309	G	C	45	98
BRCA	TCGA-A8-A095	SYNE1	SNP	Silent	6	152454417	A	G	10	57
BRCA	TCGA-A8-A095	TBC1D22B	SNP	Missense_Mutation	6	37280745	G	A	37	95
BRCA	TCGA-A8-A095	DST	SNP	Missense_Mutation	6	56485062	T	C	64	54
BRCA	TCGA-A8-A095	PHF3	SNP	Missense_Mutation	6	64423044	C	T	30	77
BRCA	TCGA-A8-A095	COL12A1	SNP	Missense_Mutation	6	75875459	A	T	12	88
BRCA	TCGA-A8-A095	MDN1	SNP	Missense_Mutation	6	90385248	C	A	29	52
BRCA	TCGA-A8-A095	MDN1	SNP	Silent	6	90400449	C	T	29	62
BRCA	TCGA-A8-A095	SRRT	SNP	Missense_Mutation	7	100485916	C	T	30	75
BRCA	TCGA-A8-A095	METTL2B	SNP	Missense_Mutation	7	128133877	C	G	24	71
BRCA	TCGA-A8-A095	CALD1	SNP	Missense_Mutation	7	134625906	C	G	31	54
BRCA	TCGA-A8-A095	PKHD1L1	SNP	Missense_Mutation	8	110457083	A	G	10	69
BRCA	TCGA-A8-A095	KCNU1	SNP	Missense_Mutation	8	36780034	G	A	45	60
BRCA	TCGA-A8-A095	SNTG1	SNP	Silent	8	51569549	G	A	45	45
BRCA	TCGA-A8-A095	SETX	SNP	Splice_Site	9	135211682	C	A	18	90
BRCA	TCGA-A8-A095	VCP	SNP	Missense_Mutation	9	35065250	C	G	32	100
BRCA	TCGA-A8-A095	KIAA1432	SNP	Missense_Mutation	9	5763849	C	T	32	99
BRCA	TCGA-A8-A096	UBE4B	SNP	Missense_Mutation	1	10231364	G	A	38	100
BRCA	TCGA-A8-A096	PRRX1	SNP	Missense_Mutation	1	170695530	C	T	27	93
BRCA	TCGA-A8-A096	SIPA1L2	SNP	Missense_Mutation	1	232651059	T	G	56	58
BRCA	TCGA-A8-A096	TTC4	SNP	Silent	1	55183238	A	G	8	0
BRCA	TCGA-A8-A096	KSR2	SNP	Splice_site	12	117914399	G	A	38	55
BRCA	TCGA-A8-A096	TRHDE	SNP	Missense_Mutation	12	72866866	C	T	19	99
BRCA	TCGA-A8-A096	SACS	SNP	Missense_Mutation	13	23912580	G	C	48	87
BRCA	TCGA-A8-A096	SYNE2	SNP	Missense_Mutation	14	64625506	A	G	2	50
BRCA	TCGA-A8-A096	UNC79	SNP	Missense_Mutation	14	94088964	G	T	33	60
BRCA	TCGA-A8-A096	ADAMTSL3	SNP	Missense_Mutation	15	84700109	G	A	40	26
BRCA	TCGA-A8-A096	CNGB1	SNP	Silent	16	57951250	G	A	44	64
BRCA	TCGA-A8-A096	CBFB	SNP	Missense_Mutation	16	67100664	G	A	44	97
BRCA	TCGA-A8-A096	TRPV3	SNP	Silent	17	3431412	C	T	27	48
BRCA	TCGA-A8-A096	HELZ	SNP	Missense_Mutation	17	65157188	A	C	8	90
BRCA	TCGA-A8-A096	MYO5B	SNP	Missense_Mutation	18	47432808	G	A	39	60
BRCA	TCGA-A8-A096	OR10H2	SNP	Silent	19	15839336	G	A	39	43
BRCA	TCGA-A8-A096	SLC17A7	INS	Frame_Shift_Ins	19	49938068	-	A	49	84
BRCA	TCGA-A8-A096	LRP2	SNP	Silent	2	170030640	G	A	38	49
BRCA	TCGA-A8-A096	RAPGEF4	SNP	Splice_Site	2	173891808	G	C	34	98
BRCA	TCGA-A8-A096	PDE11A	SNP	Missense_Mutation	2	178762823	G	A	40	88
BRCA	TCGA-A8-A096	STK11IP	SNP	Missense_Mutation	2	220471821	C	T	19	88
BRCA	TCGA-A8-A096	IGSF1	SNP	Missense_Mutation	23	130410201	A	T	11	70
BRCA	TCGA-A8-A096	WNK3	SNP	Missense_Mutation	23	54275401	A	G	12	54
BRCA	TCGA-A8-A096	OTUD6A	SNP	Missense_Mutation	23	69282426	G	A	37	69
BRCA	TCGA-A8-A096	TBL1XR1	DEL	Frame_Shift_Del	3	176769296	TA	-	53	57
BRCA	TCGA-A8-A096	TBL1XR1	INS	Frame_Shift_Ins	3	176769299	-	TG	15	46
BRCA	TCGA-A8-A096	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A096	BSN	SNP	Missense_Mutation	3	49694979	G	A	40	73
BRCA	TCGA-A8-A096	CSNK1G3	SNP	Splice_site	5	122911423	A	G	12	75
BRCA	TCGA-A8-A096	HIST1H1C	SNP	Missense_Mutation	6	26056062	T	C	61	90
BRCA	TCGA-A8-A096	PRPF4B	SNP	Missense_Mutation	6	4049302	A	G	2	77
BRCA	TCGA-A8-A096		SNP	Missense_Mutation	7	102016298	T	G	59	58
BRCA	TCGA-A8-A096	GRHL2	SNP	Splice_Site	8	102571041	G	T	44	91
BRCA	TCGA-A8-A096	KIAA1984	INS	Frame_Shift_Ins	9	139701290	-	C	7	45
BRCA	TCGA-A8-A097	KCNC4	SNP	Missense_Mutation	1	110766559	C	T	22	49
BRCA	TCGA-A8-A097	AMPD1	SNP	Missense_Mutation	1	115223067	G	C	43	100
BRCA	TCGA-A8-A097	WDR3	SNP	Silent	1	118494625	C	T	23	58
BRCA	TCGA-A8-A097	TCHHL1	SNP	Missense_Mutation	1	152058564	C	T	22	49
BRCA	TCGA-A8-A097	TRNAU1AP	SNP	Silent	1	28904118	A	T	7	35
BRCA	TCGA-A8-A097	PEF1	SNP	Missense_Mutation	1	32098853	G	C	45	80
BRCA	TCGA-A8-A097	COL16A1	SNP	Missense_Mutation	1	32149769	C	A	21	84
BRCA	TCGA-A8-A097	PHF13	SNP	Missense_Mutation	1	6681554	A	C	6	88
BRCA	TCGA-A8-A097	PITRM1	SNP	Missense_Mutation	10	3189822	G	A	46	100
BRCA	TCGA-A8-A097	AKR1E2	SNP	Silent	10	4884037	G	A	36	61
BRCA	TCGA-A8-A097	FAM208B	SNP	Missense_Mutation	10	5800903	T	C	51	82
BRCA	TCGA-A8-A097	FAM190B	SNP	Missense_Mutation	10	86259685	C	A	22	83
BRCA	TCGA-A8-A097	MMP3	SNP	Missense_Mutation	11	102712906	G	T	48	49
BRCA	TCGA-A8-A097	DPAGT1	DEL	Frame_Shift_Del	11	118967894	G	-	47	56
BRCA	TCGA-A8-A097	MICAL2	SNP	Nonsense_Mutation	11	12265628	C	G	29	84
BRCA	TCGA-A8-A097	PRMT3	SNP	Missense_Mutation	11	20529900	C	T	19	78
BRCA	TCGA-A8-A097	ZFPL1	SNP	Silent	11	64854242	C	T	32	81
BRCA	TCGA-A8-A097	OAS3	SNP	Missense_Mutation	12	113388650	G	T	35	43
BRCA	TCGA-A8-A097	MRPL51	SNP	Missense_Mutation	12	6601615	G	A	43	100
BRCA	TCGA-A8-A097	PTPRB	SNP	Missense_Mutation	12	70954712	G	T	43	96
BRCA	TCGA-A8-A097	NEK5	SNP	Missense_Mutation	13	52701610	C	A	20	48
BRCA	TCGA-A8-A097	PLEKHD1	SNP	Splice_site	14	69967295	G	T	42	88
BRCA	TCGA-A8-A097	SERPINA1	SNP	Missense_Mutation	14	94849571	G	C	42	51
BRCA	TCGA-A8-A097	PAPOLA	SNP	Silent	14	96997870	G	T	37	84
BRCA	TCGA-A8-A097	LOC728047	SNP	Silent	15	32743817	T	C	60	49
BRCA	TCGA-A8-A097	ZSCAN29	SNP	Silent	15	43658336	A	G	7	56
BRCA	TCGA-A8-A097	DMXL2	SNP	Missense_Mutation	15	51783884	T	C	52	88
BRCA	TCGA-A8-A097	DNAH3	SNP	Silent	16	21011634	C	T	32	71
BRCA	TCGA-A8-A097	CREBBP	SNP	Silent	16	3779642	C	G	25	50
BRCA	TCGA-A8-A097	WWP2	SNP	Missense_Mutation	16	69921986	G	A	40	70
BRCA	TCGA-A8-A097	NLRP1	SNP	Missense_Mutation	17	5436639	T	C	52	50
BRCA	TCGA-A8-A097	TP53	DEL	Frame_Shift_Del	17	7577531	G	-	47	55
BRCA	TCGA-A8-A097	GUCY2D	SNP	Silent	17	7912874	C	T	30	56
BRCA	TCGA-A8-A097	KLHL14	SNP	Missense_Mutation	18	30267172	C	G	28	96
BRCA	TCGA-A8-A097	SYT4	SNP	Missense_Mutation	18	40853980	A	T	2	60
BRCA	TCGA-A8-A097	PHLPP1	SNP	Nonsense_Mutation	18	60384462	G	T	41	89
BRCA	TCGA-A8-A097	DNMT1	SNP	Silent	19	10250460	G	T	41	44
BRCA	TCGA-A8-A097	CLPTM1	SNP	Missense_Mutation	19	45490564	C	G	32	77
BRCA	TCGA-A8-A097	KLK2	SNP	Missense_Mutation	19	51381748	C	T	24	87
BRCA	TCGA-A8-A097	NLRP9	SNP	Silent	19	56243391	A	G	9	48
BRCA	TCGA-A8-A097	IL1RL1	SNP	Silent	2	102964505	C	A	21	44
BRCA	TCGA-A8-A097	TTN	SNP	Missense_Mutation	2	179425922	C	T	29	100
BRCA	TCGA-A8-A097	TTN	SNP	Missense_Mutation	2	179599535	A	T	3	93
BRCA	TCGA-A8-A097	DNAJC10	SNP	Silent	2	183597233	G	A	45	60
BRCA	TCGA-A8-A097	BIRC6	SNP	Missense_Mutation	2	32824821	C	A	30	100
BRCA	TCGA-A8-A097	MRPS5	SNP	Missense_Mutation	2	95767455	C	T	30	64
BRCA	TCGA-A8-A097	SGK2	SNP	Silent	20	42204866	G	A	38	33
BRCA	TCGA-A8-A097	KRTAP10-6	SNP	Silent	21	46011700	G	A	43	54
BRCA	TCGA-A8-A097	AP1B1	SNP	Missense_Mutation	22	29726496	G	C	46	55
BRCA	TCGA-A8-A097	IL13RA2	SNP	Missense_Mutation	23	114242507	G	T	48	43
BRCA	TCGA-A8-A097	CXorf56	SNP	Missense_Mutation	23	118694273	T	G	56	82
BRCA	TCGA-A8-A097	PRRG3	SNP	Silent	23	150869481	C	A	23	37
BRCA	TCGA-A8-A097	TMEM27	SNP	Missense_Mutation	23	15657865	C	T	23	82
BRCA	TCGA-A8-A097	ZNF630	SNP	Silent	23	47920304	A	G	8	49
BRCA	TCGA-A8-A097	CACNA1F	SNP	Missense_Mutation	23	49065756	T	G	54	57
BRCA	TCGA-A8-A097	LOC100288024	SNP	Missense_Mutation	23	53221858	C	A	21	58
BRCA	TCGA-A8-A097	SLC16A2	INS	Frame_Shift_Ins	23	73641302	-	G	11	57
BRCA	TCGA-A8-A097	PCYT1A	SNP	Missense_Mutation	3	195968873	C	A	26	52
BRCA	TCGA-A8-A097	LRRN1	SNP	Missense_Mutation	3	3887664	T	C	55	92
BRCA	TCGA-A8-A097	GPR27	SNP	Missense_Mutation	3	71804099	A	G	14	75
BRCA	TCGA-A8-A097	C4orf17	SNP	Missense_Mutation	4	100461586	C	G	32	71
BRCA	TCGA-A8-A097	INTU	SNP	Missense_Mutation	4	128565122	G	A	33	62
BRCA	TCGA-A8-A097	GPR125	SNP	Missense_Mutation	4	22438206	C	G	21	59
BRCA	TCGA-A8-A097	KDR	SNP	Silent	4	55980407	C	G	29	69
BRCA	TCGA-A8-A097	SLC4A4	SNP	Missense_Mutation	4	72432765	T	A	49	55
BRCA	TCGA-A8-A097	AFM	SNP	Missense_Mutation	4	74363407	G	T	33	53
BRCA	TCGA-A8-A097	PCDHB16	SNP	Missense_Mutation	5	140563393	C	T	18	66
BRCA	TCGA-A8-A097	TCERG1	SNP	Silent	5	145859431	G	A	37	45
BRCA	TCGA-A8-A097	GPR151	SNP	Missense_Mutation	5	145895382	A	G	14	89
BRCA	TCGA-A8-A097	CDH10	SNP	Silent	5	24511481	G	A	37	48
BRCA	TCGA-A8-A097	SAMD3	SNP	Missense_Mutation	6	130466530	A	T	8	65
BRCA	TCGA-A8-A097	HIST1H3C	DEL	In_Frame_Del	6	26045934	CCTACC	-	26	96
BRCA	TCGA-A8-A097	HIST1H3C	DEL	Frame_Shift_Del	6	26045942	GTGGGAC	-	44	96
BRCA	TCGA-A8-A097	ZSCAN16	SNP	Missense_Mutation	6	28093507	G	C	33	78
BRCA	TCGA-A8-A097	ECI2	SNP	Nonsense_Mutation	6	4116163	G	C	45	91
BRCA	TCGA-A8-A097	NFKBIE	SNP	Missense_Mutation	6	44226961	C	G	31	68
BRCA	TCGA-A8-A097	TNFRSF21	SNP	Missense_Mutation	6	47202544	C	T	27	51
BRCA	TCGA-A8-A097	NRCAM	SNP	Missense_Mutation	7	107824982	C	A	32	59
BRCA	TCGA-A8-A097	WDR60	SNP	Silent	7	158723189	G	C	45	46
BRCA	TCGA-A8-A097	GRM3	SNP	Silent	7	86468645	C	T	24	44
BRCA	TCGA-A8-A097	ARPC1A	SNP	Missense_Mutation	7	98942068	G	C	33	100
BRCA	TCGA-A8-A097	MCPH1	SNP	Splice_site	8	6335116	C	A	21	62
BRCA	TCGA-A8-A097	TLR4	SNP	Missense_Mutation	9	120475977	T	A	57	50
BRCA	TCGA-A8-A097	DBC1	SNP	Missense_Mutation	9	122075479	C	A	24	82
BRCA	TCGA-A8-A099	POLR3GL	SNP	Splice_site	1	145457308	C	A	30	52
BRCA	TCGA-A8-A099	AXDND1	SNP	Silent	1	179399655	A	G	2	61
BRCA	TCGA-A8-A099	LPHN2	SNP	Nonsense_Mutation	1	82445611	T	A	63	91
BRCA	TCGA-A8-A099	KCNK18	SNP	Silent	10	118957008	C	T	32	51
BRCA	TCGA-A8-A099	AMICA1	SNP	Missense_Mutation	11	118074301	C	T	19	73
BRCA	TCGA-A8-A099	GANAB	SNP	Splice_site	11	62396766	T	C	54	53
BRCA	TCGA-A8-A099	DHH	SNP	Missense_Mutation	12	49485024	G	A	40	98
BRCA	TCGA-A8-A099	GJB6	SNP	Silent	13	20797608	C	A	30	38
BRCA	TCGA-A8-A099	RNF219	SNP	Missense_Mutation	13	79190282	G	C	33	56
BRCA	TCGA-A8-A099	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-A8-A099	RYR3	SNP	Missense_Mutation	15	34023739	C	T	23	100
BRCA	TCGA-A8-A099	PLA2G4F	SNP	Missense_Mutation	15	42438328	C	A	25	90
BRCA	TCGA-A8-A099	SLC28A2	SNP	Missense_Mutation	15	45560544	G	A	41	69
BRCA	TCGA-A8-A099	FAM227B	SNP	Missense_Mutation	15	49880251	C	T	30	49
BRCA	TCGA-A8-A099	RABEP2	SNP	Missense_Mutation	16	28919994	G	T	41	74
BRCA	TCGA-A8-A099	MYOM1	SNP	Missense_Mutation	18	3067396	G	A	37	87
BRCA	TCGA-A8-A099	NBEAL1	SNP	Missense_Mutation	2	204045211	C	G	22	100
BRCA	TCGA-A8-A099	NINL	SNP	Missense_Mutation	20	25493495	C	T	27	57
BRCA	TCGA-A8-A099	KCNQ2	SNP	Silent	20	62073861	G	T	37	49
BRCA	TCGA-A8-A099	RNF128	SNP	Missense_Mutation	23	105937248	A	G	15	65
BRCA	TCGA-A8-A099	HS6ST2	SNP	Missense_Mutation	23	131762771	A	C	11	90
BRCA	TCGA-A8-A099	MYNN	SNP	Missense_Mutation	3	169492273	G	T	45	98
BRCA	TCGA-A8-A099	PAPSS1	SNP	Missense_Mutation	4	108535506	G	A	38	77
BRCA	TCGA-A8-A099	TRIM60	SNP	Missense_Mutation	4	165961589	C	A	30	60
BRCA	TCGA-A8-A099	WBSCR16	SNP	Missense_Mutation	7	74482534	C	A	18	96
BRCA	TCGA-A8-A099	COL1A2	SNP	Missense_Mutation	7	94052368	G	A	35	100
BRCA	TCGA-A8-A099	EMC2	SNP	Missense_Mutation	8	109498777	C	G	32	58
BRCA	TCGA-A8-A099	PRKDC	SNP	Missense_Mutation	8	48840380	G	A	47	80
BRCA	TCGA-A8-A099	C9orf170	SNP	Missense_Mutation	9	89771612	G	T	39	52
BRCA	TCGA-A8-A09A	CDC14A	SNP	Silent	1	100921011	A	G	8	51
BRCA	TCGA-A8-A09A	CELSR2	SNP	Silent	1	109813577	C	T	28	69
BRCA	TCGA-A8-A09A	CHIA	SNP	Missense_Mutation	1	111854943	A	G	9	48
BRCA	TCGA-A8-A09A	CERS2	SNP	Silent	1	150941434	G	A	35	61
BRCA	TCGA-A8-A09A	TRIM46	DNP	Missense_Mutation	1	155150624	GC	AT	34	56
BRCA	TCGA-A8-A09A	LMX1A	SNP	Missense_Mutation	1	165173228	A	T	14	65
BRCA	TCGA-A8-A09A	GLUL	SNP	Silent	1	182354560	C	T	30	26
BRCA	TCGA-A8-A09A	NFASC	SNP	Missense_Mutation	1	204966311	G	T	46	57
BRCA	TCGA-A8-A09A	SNAP47	SNP	Silent	1	227935803	G	A	45	52
BRCA	TCGA-A8-A09A	NID1	SNP	Missense_Mutation	1	236189310	G	A	39	56
BRCA	TCGA-A8-A09A	SDCCAG8	DEL	In_Frame_Del	1	243504344	TTGATC	-	60	57
BRCA	TCGA-A8-A09A	TEKT2	SNP	Missense_Mutation	1	36550806	A	T	11	67
BRCA	TCGA-A8-A09A	MACF1	SNP	Missense_Mutation	1	39799640	T	G	61	53
BRCA	TCGA-A8-A09A	ATP6V0B	SNP	Missense_Mutation	1	44442306	C	A	25	99
BRCA	TCGA-A8-A09A	KLF17	DEL	Frame_Shift_Del	1	44596297	CAGTG	-	29	53
BRCA	TCGA-A8-A09A	OMA1	SNP	Missense_Mutation	1	59004723	G	C	35	50
BRCA	TCGA-A8-A09A	ZNF644	SNP	Missense_Mutation	1	91405516	T	A	60	52
BRCA	TCGA-A8-A09A	ARHGAP29	SNP	Missense_Mutation	1	94643587	G	A	40	60
BRCA	TCGA-A8-A09A	LOXL4	SNP	Missense_Mutation	10	100015449	C	A	29	76
BRCA	TCGA-A8-A09A	BTRC	SNP	Nonsense_Mutation	10	103190165	C	T	27	87
BRCA	TCGA-A8-A09A	STAMBPL1	SNP	Missense_Mutation	10	90682109	G	T	42	59
BRCA	TCGA-A8-A09A	KIF20B	SNP	Missense_Mutation	10	91497158	A	T	15	51
BRCA	TCGA-A8-A09A	SLC35F2	SNP	Splice_site	11	107676086	G	T	34	58
BRCA	TCGA-A8-A09A	IFT46	SNP	Missense_Mutation	11	118416559	G	T	42	91
BRCA	TCGA-A8-A09A	TRIM29	SNP	Missense_Mutation	11	120008036	A	C	9	71
BRCA	TCGA-A8-A09A	SLC37A2	SNP	Missense_Mutation	11	124949644	T	A	62	84
BRCA	TCGA-A8-A09A	NAV2	SNP	Missense_Mutation	11	20119207	C	G	27	100
BRCA	TCGA-A8-A09A	KCNQ1	SNP	Silent	11	2604682	C	A	31	33
BRCA	TCGA-A8-A09A	CHRM1	SNP	Missense_Mutation	11	62677860	C	A	28	90
BRCA	TCGA-A8-A09A	TPP1	DEL	In_Frame_Del	11	6638951	GGGTCAGTG	-	35	69
BRCA	TCGA-A8-A09A	ALG8	SNP	Missense_Mutation	11	77820538	G	A	41	75
BRCA	TCGA-A8-A09A	MAML2	SNP	Missense_Mutation	11	95718755	G	T	41	92
BRCA	TCGA-A8-A09A	DTX1	SNP	Silent	12	113534723	C	A	23	19
BRCA	TCGA-A8-A09A	IQCD	SNP	Missense_Mutation	12	113633529	C	G	18	53
BRCA	TCGA-A8-A09A	PDZRN4	SNP	Missense_Mutation	12	41967010	T	A	60	41
BRCA	TCGA-A8-A09A	ADAMTS20	SNP	Missense_Mutation	12	43826141	G	A	41	71
BRCA	TCGA-A8-A09A	KRT2	SNP	Missense_Mutation	12	53045580	C	G	26	65
BRCA	TCGA-A8-A09A	KRT3	SNP	Missense_Mutation	12	53184633	G	A	34	62
BRCA	TCGA-A8-A09A	OR10A7	SNP	Missense_Mutation	12	55614826	C	A	17	48
BRCA	TCGA-A8-A09A	LGR5	SNP	Missense_Mutation	12	71978313	G	T	41	79
BRCA	TCGA-A8-A09A	TMTC2	SNP	Splice_site	12	83359523	G	A	35	96
BRCA	TCGA-A8-A09A	COG3	SNP	Splice_Site	13	46065675	T	C	57	90
BRCA	TCGA-A8-A09A	DIO3	SNP	Silent	14	102028157	G	A	48	50
BRCA	TCGA-A8-A09A	SUPT16H	SNP	Missense_Mutation	14	21831260	C	G	28	98
BRCA	TCGA-A8-A09A	RBM23	SNP	Silent	14	23371049	G	A	33	49
BRCA	TCGA-A8-A09A	PTGDR	SNP	Silent	14	52734664	G	A	39	39
BRCA	TCGA-A8-A09A	SYNE2	SNP	Missense_Mutation	14	64519171	A	C	5	76
BRCA	TCGA-A8-A09A	SIPA1L1	SNP	Missense_Mutation	14	72055185	G	C	41	100
BRCA	TCGA-A8-A09A	TJP1	SNP	Missense_Mutation	15	29997787	G	C	33	61
BRCA	TCGA-A8-A09A	KIAA1370	SNP	Missense_Mutation	15	52903397	C	A	17	99
BRCA	TCGA-A8-A09A	VPS13C	SNP	Splice_site	15	62242616	C	A	26	88
BRCA	TCGA-A8-A09A	SEMA7A	INS	Frame_Shift_Ins	15	74707008	-	A	30	66
BRCA	TCGA-A8-A09A	SNX20	SNP	Missense_Mutation	16	50707754	G	A	39	58
BRCA	TCGA-A8-A09A	CHD9	SNP	Missense_Mutation	16	53279531	A	C	9	93
BRCA	TCGA-A8-A09A	NLRC5	SNP	Missense_Mutation	16	57104491	T	C	51	54
BRCA	TCGA-A8-A09A	CNOT1	DNP	Missense_Mutation	16	58559182	GC	TA	46	100
BRCA	TCGA-A8-A09A	FUK	SNP	Silent	16	70500919	T	A	55	46
BRCA	TCGA-A8-A09A	PMFBP1	SNP	Missense_Mutation	16	72170703	G	T	46	55
BRCA	TCGA-A8-A09A	SLFN12L	SNP	Missense_Mutation	17	33807026	G	A	34	65
BRCA	TCGA-A8-A09A	RAPGEFL1	SNP	Silent	17	38345157	G	A	34	51
BRCA	TCGA-A8-A09A	CCR7	SNP	Missense_Mutation	17	38711716	T	A	54	91
BRCA	TCGA-A8-A09A	STAT5A	DNP	Missense_Mutation	17	40458279	GC	TG	46	67
BRCA	TCGA-A8-A09A	GP1BA	SNP	Missense_Mutation	17	4836276	A	C	2	76
BRCA	TCGA-A8-A09A	ATP5A1	SNP	Silent	18	43667040	T	G	53	48
BRCA	TCGA-A8-A09A	CCNE1	SNP	Missense_Mutation	19	30313457	G	A	38	61
BRCA	TCGA-A8-A09A	CATSPERG	SNP	Missense_Mutation	19	38853402	C	T	26	62
BRCA	TCGA-A8-A09A	PSG11	SNP	Missense_Mutation	19	43530506	G	C	43	50
BRCA	TCGA-A8-A09A	PPP5C	SNP	Silent	19	46890423	G	A	33	72
BRCA	TCGA-A8-A09A	ZNF470	SNP	Missense_Mutation	19	57085861	A	T	15	52
BRCA	TCGA-A8-A09A	PNPLA6	SNP	Silent	19	7619510	G	A	33	52
BRCA	TCGA-A8-A09A	ADAMTS10	SNP	Silent	19	8661220	C	G	19	43
BRCA	TCGA-A8-A09A	MUC16	SNP	Missense_Mutation	19	8971795	G	T	46	47
BRCA	TCGA-A8-A09A	STAT4	SNP	Missense_Mutation	2	191931190	T	C	55	87
BRCA	TCGA-A8-A09A	MYO1B	SNP	Missense_Mutation	2	192250662	C	A	17	70
BRCA	TCGA-A8-A09A	CYP27A1	SNP	Silent	2	219677771	G	A	43	13
BRCA	TCGA-A8-A09A	FAM179A	SNP	Missense_Mutation	2	29274906	G	T	44	37
BRCA	TCGA-A8-A09A	SOS1	SNP	Silent	2	39224156	C	T	31	53
BRCA	TCGA-A8-A09A	USP34	SNP	Nonsense_Mutation	2	61492665	C	T	21	86
BRCA	TCGA-A8-A09A	DEFB115	SNP	Missense_Mutation	20	29847380	A	T	3	56
BRCA	TCGA-A8-A09A	EPB41L1	SNP	Nonsense_Mutation	20	34775661	C	G	19	38
BRCA	TCGA-A8-A09A	DLGAP4	SNP	Missense_Mutation	20	35152658	G	C	35	100
BRCA	TCGA-A8-A09A	IFT52	SNP	Silent	20	42275617	T	C	52	51
BRCA	TCGA-A8-A09A	HNF4A	SNP	Missense_Mutation	20	43042402	A	T	8	91
BRCA	TCGA-A8-A09A	PCNT	SNP	Missense_Mutation	21	47775512	G	A	40	30
BRCA	TCGA-A8-A09A	INPP5J	SNP	Missense_Mutation	22	31522391	C	A	20	80
BRCA	TCGA-A8-A09A	WWC3	SNP	Missense_Mutation	23	10062266	C	T	28	98
BRCA	TCGA-A8-A09A	TCEANC	SNP	Missense_Mutation	23	13681505	A	G	4	54
BRCA	TCGA-A8-A09A	BCOR	SNP	Silent	23	39932241	C	T	28	56
BRCA	TCGA-A8-A09A	HUWE1	SNP	Missense_Mutation	23	53644083	C	G	26	96
BRCA	TCGA-A8-A09A	GNL3L	SNP	Missense_Mutation	23	54578020	C	A	24	67
BRCA	TCGA-A8-A09A	IRAK2	SNP	Missense_Mutation	3	10255044	C	T	25	60
BRCA	TCGA-A8-A09A	HEG1	SNP	Missense_Mutation	3	124748125	G	C	33	76
BRCA	TCGA-A8-A09A	CNTN4	SNP	Missense_Mutation	3	3080650	G	A	42	94
BRCA	TCGA-A8-A09A	CLASP2	SNP	Missense_Mutation	3	33668523	A	G	4	90
BRCA	TCGA-A8-A09A	SMARCC1	SNP	Silent	3	47770552	G	C	43	52
BRCA	TCGA-A8-A09A	CCDC66	SNP	Missense_Mutation	3	56653531	G	A	41	60
BRCA	TCGA-A8-A09A	ELOVL6	SNP	Missense_Mutation	4	110980805	G	C	46	100
BRCA	TCGA-A8-A09A	TMEM156	SNP	Silent	4	38990517	A	C	15	72
BRCA	TCGA-A8-A09A	KIT	SNP	Missense_Mutation	4	55589813	G	A	41	99
BRCA	TCGA-A8-A09A	ANKRD17	SNP	Silent	4	74043217	C	T	30	84
BRCA	TCGA-A8-A09A	PPEF2	SNP	Silent	4	76782042	G	A	35	42
BRCA	TCGA-A8-A09A	CCDC112	SNP	Nonsense_Mutation	5	114611095	G	A	38	69
BRCA	TCGA-A8-A09A	NMUR2	SNP	Missense_Mutation	5	151777641	T	G	64	67
BRCA	TCGA-A8-A09A	MFAP3	SNP	Silent	5	153432652	G	T	45	65
BRCA	TCGA-A8-A09A	ADAM19	SNP	Nonsense_Mutation	5	156907994	G	C	45	55
BRCA	TCGA-A8-A09A	CEP72	SNP	Missense_Mutation	5	635516	G	C	44	45
BRCA	TCGA-A8-A09A	MTRR	SNP	Silent	5	7878078	G	A	40	29
BRCA	TCGA-A8-A09A	PCSK1	SNP	Silent	5	95746673	C	A	18	50
BRCA	TCGA-A8-A09A	GRIK2	SNP	Missense_Mutation	6	102124623	G	C	41	100
BRCA	TCGA-A8-A09A	AIM1	SNP	Missense_Mutation	6	106967193	A	G	14	50
BRCA	TCGA-A8-A09A	NEDD9	SNP	Missense_Mutation	6	11213899	C	T	27	100
BRCA	TCGA-A8-A09A	CDKAL1	SNP	Missense_Mutation	6	21201369	T	G	51	75
BRCA	TCGA-A8-A09A	BTN2A3	SNP	Silent	6	26431102	G	A	34	52
BRCA	TCGA-A8-A09A	NKAPL	SNP	Silent	6	28227179	C	A	23	32
BRCA	TCGA-A8-A09A	B3GALT4	SNP	Missense_Mutation	6	33245209	C	A	28	53
BRCA	TCGA-A8-A09A	KCNQ5	SNP	Missense_Mutation	6	73900398	G	T	48	85
BRCA	TCGA-A8-A09A	PRSS35	SNP	Silent	6	84233451	G	A	43	49
BRCA	TCGA-A8-A09A	SLC26A5	SNP	Silent	7	103051936	G	T	46	46
BRCA	TCGA-A8-A09A	RINT1	SNP	Missense_Mutation	7	105187507	A	T	1	55
BRCA	TCGA-A8-A09A	CPA1	SNP	Missense_Mutation	7	130025723	A	G	14	81
BRCA	TCGA-A8-A09A	HIPK2	SNP	Splice_site	7	139305147	C	T	24	98
BRCA	TCGA-A8-A09A	HIPK2	SNP	Nonsense_Mutation	7	139416107	C	A	29	99
BRCA	TCGA-A8-A09A	MGAM	SNP	Splice_Site	7	141766522	G	C	36	92
BRCA	TCGA-A8-A09A	MGAM	SNP	Missense_Mutation	7	141802435	T	G	53	50
BRCA	TCGA-A8-A09A	CDCA7L	SNP	Missense_Mutation	7	21947807	G	T	47	61
BRCA	TCGA-A8-A09A	IGF2BP3	SNP	Missense_Mutation	7	23351989	G	A	40	57
BRCA	TCGA-A8-A09A	SCRN1	SNP	Silent	7	29994932	T	G	61	47
BRCA	TCGA-A8-A09A	ABCA13	SNP	Missense_Mutation	7	48312968	G	T	47	65
BRCA	TCGA-A8-A09A	GTF2IRD2P1	SNP	Missense_Mutation	7	72658101	G	A	39	59
BRCA	TCGA-A8-A09A	MDH2	SNP	Missense_Mutation	7	75689766	G	A	40	100
BRCA	TCGA-A8-A09A	EXT1	SNP	Nonsense_Mutation	8	118842508	A	C	4	72
BRCA	TCGA-A8-A09A	LZTS1	SNP	Missense_Mutation	8	20112577	T	C	58	89
BRCA	TCGA-A8-A09A	AKNA	SNP	Silent	9	117120303	G	A	39	29
BRCA	TCGA-A8-A09A	CNTLN	SNP	Missense_Mutation	9	17235769	A	T	3	56
BRCA	TCGA-A8-A09A	ADAMTSL1	SNP	Missense_Mutation	9	18776908	C	T	27	84
BRCA	TCGA-A8-A09A	IFNA10	SNP	Missense_Mutation	9	21206600	A	C	2	54
BRCA	TCGA-A8-A09A	DDX58	SNP	Missense_Mutation	9	32466308	C	T	31	62
BRCA	TCGA-A8-A09A	JAK2	SNP	Nonsense_Mutation	9	5022119	C	A	18	50
BRCA	TCGA-A8-A09A	TRPM6	SNP	Missense_Mutation	9	77377214	G	A	45	87
BRCA	TCGA-A8-A09A	DAPK1	SNP	Silent	9	90220079	G	T	45	45
BRCA	TCGA-A8-A09B	RPL22	SNP	Silent	1	6246831	T	G	57	15
BRCA	TCGA-A8-A09B	TCF7L2	SNP	Missense_Mutation	10	114849277	T	C	60	71
BRCA	TCGA-A8-A09B	CTSW	SNP	Missense_Mutation	11	65650133	G	A	41	66
BRCA	TCGA-A8-A09B	MLL2	SNP	Silent	12	49444769	G	C	43	49
BRCA	TCGA-A8-A09B	ESPL1	DEL	Frame_Shift_Del	12	53684751	T	-	55	66
BRCA	TCGA-A8-A09B	ATP11A	SNP	Splice_Site	13	113464932	G	C	35	93
BRCA	TCGA-A8-A09B	B3GALTL	SNP	Silent	13	31903712	C	T	31	49
BRCA	TCGA-A8-A09B	GPC5	SNP	Missense_Mutation	13	93518661	G	T	36	54
BRCA	TCGA-A8-A09B	GOLGA8A	SNP	Missense_Mutation	15	34673767	C	T	32	53
BRCA	TCGA-A8-A09B	FAM81A	SNP	Missense_Mutation	15	59784566	G	A	33	75
BRCA	TCGA-A8-A09B	UBE2Q2	SNP	Missense_Mutation	15	76146749	C	T	23	86
BRCA	TCGA-A8-A09B	ERAL1	SNP	Silent	17	27185468	G	A	36	91
BRCA	TCGA-A8-A09B	RAB40B	SNP	Missense_Mutation	17	80615975	C	T	19	99
BRCA	TCGA-A8-A09B	SERPINB11	SNP	Missense_Mutation	18	61387255	G	A	38	68
BRCA	TCGA-A8-A09B	COL5A3	SNP	Nonsense_Mutation	19	10084293	G	A	38	68
BRCA	TCGA-A8-A09B	RYR1	SNP	Missense_Mutation	19	38948842	C	T	22	98
BRCA	TCGA-A8-A09B	LTBP4	SNP	Missense_Mutation	19	41123021	G	A	39	63
BRCA	TCGA-A8-A09B	CNFN	SNP	Missense_Mutation	19	42891312	C	T	31	83
BRCA	TCGA-A8-A09B	PNMAL2	SNP	Missense_Mutation	19	46997306	C	T	30	54
BRCA	TCGA-A8-A09B	SHANK1	SNP	Missense_Mutation	19	51192217	G	A	43	89
BRCA	TCGA-A8-A09B	CLEC4G	SNP	Missense_Mutation	19	7795289	C	G	24	53
BRCA	TCGA-A8-A09B	HUNK	SNP	Silent	21	33331189	C	T	28	73
BRCA	TCGA-A8-A09B	TNRC6B	INS	Splice_Site	22	40669427	-	T	3	89
BRCA	TCGA-A8-A09B	ATXN10	SNP	Missense_Mutation	22	46098586	C	T	23	58
BRCA	TCGA-A8-A09B	TRPC5	SNP	Silent	23	111095568	G	C	33	64
BRCA	TCGA-A8-A09B	ITIH6	SNP	Missense_Mutation	23	54777709	G	A	39	45
BRCA	TCGA-A8-A09B	DPPA2	SNP	Missense_Mutation	3	109026960	C	T	25	56
BRCA	TCGA-A8-A09B	PIK3CA	DEL	In_Frame_Del	3	178928060	GCCAGTACCTCATGGATTAGAAGATTT	-	42	98
BRCA	TCGA-A8-A09B	TTC14	SNP	Missense_Mutation	3	180321044	G	T	44	98
BRCA	TCGA-A8-A09B	ITPR1	SNP	Missense_Mutation	3	4853138	G	A	48	51
BRCA	TCGA-A8-A09B	PCDHA8	SNP	Silent	5	140223030	C	T	21	59
BRCA	TCGA-A8-A09B	PCDHB1	SNP	Missense_Mutation	5	140433373	G	A	40	54
BRCA	TCGA-A8-A09B	TIGD6	SNP	Missense_Mutation	5	149375596	G	C	36	55
BRCA	TCGA-A8-A09B	C6	SNP	Missense_Mutation	5	41160256	C	T	32	100
BRCA	TCGA-A8-A09B	MAP3K1	SNP	Splice_site	5	56160761	G	A	35	77
BRCA	TCGA-A8-A09B	MAP3K1	SNP	Nonsense_Mutation	5	56161795	C	A	29	76
BRCA	TCGA-A8-A09B	CTAGE9	SNP	Missense_Mutation	6	132031833	C	T	32	NaN
BRCA	TCGA-A8-A09B	RIPK1	SNP	Silent	6	3081257	C	T	29	66
BRCA	TCGA-A8-A09B	DST	SNP	Missense_Mutation	6	56473226	C	T	31	80
BRCA	TCGA-A8-A09B	CTAGE6	SNP	Missense_Mutation	7	143453578	G	C	45	52
BRCA	TCGA-A8-A09B	SP4	SNP	Missense_Mutation	7	21469678	C	A	29	95
BRCA	TCGA-A8-A09B	SPDYE5	SNP	Missense_Mutation	7	75130890	G	A	45	51
BRCA	TCGA-A8-A09B	SPDYE5	SNP	Silent	7	75130908	G	A	33	51
BRCA	TCGA-A8-A09B	C9orf174	SNP	Missense_Mutation	9	100070026	C	T	31	34
BRCA	TCGA-A8-A09B	ANGPTL2	SNP	Silent	9	129870474	C	A	21	54
BRCA	TCGA-A8-A09C	TMEM51	SNP	Missense_Mutation	1	15541743	G	A	43	62
BRCA	TCGA-A8-A09C	SELP	SNP	Missense_Mutation	1	169578883	C	A	30	50
BRCA	TCGA-A8-A09C	CDC42BPA	SNP	Missense_Mutation	1	227327350	T	G	53	66
BRCA	TCGA-A8-A09C	SEC31B	SNP	Missense_Mutation	10	102250551	C	A	24	51
BRCA	TCGA-A8-A09C	SEC31B	SNP	Missense_Mutation	10	102258465	T	C	64	67
BRCA	TCGA-A8-A09C	AGBL2	SNP	Missense_Mutation	11	47688436	T	A	52	47
BRCA	TCGA-A8-A09C	CD5	SNP	Silent	11	60886752	T	C	59	48
BRCA	TCGA-A8-A09C	NXF1	SNP	Missense_Mutation	11	62564800	G	A	39	92
BRCA	TCGA-A8-A09C	DENND5A	SNP	Silent	11	9200591	A	G	16	50
BRCA	TCGA-A8-A09C	MAML2	SNP	Silent	11	95826166	G	A	36	73
BRCA	TCGA-A8-A09C	DIP2B	SNP	Missense_Mutation	12	51138497	G	C	40	88
BRCA	TCGA-A8-A09C	CALCOCO1	SNP	Missense_Mutation	12	54117515	G	T	44	53
BRCA	TCGA-A8-A09C	PLXNC1	SNP	Missense_Mutation	12	94641830	C	T	19	70
BRCA	TCGA-A8-A09C	EXD2	SNP	Silent	14	69707724	G	A	34	62
BRCA	TCGA-A8-A09C	VWA3A	INS	Frame_Shift_Ins	16	22128100	-	C	50	65
BRCA	TCGA-A8-A09C	MYO5B	SNP	Missense_Mutation	18	47363248	T	C	49	64
BRCA	TCGA-A8-A09C	ZNF415	SNP	Silent	19	53612815	T	C	52	49
BRCA	TCGA-A8-A09C	LILRA6	SNP	Silent	19	54742958	G	A	40	28
BRCA	TCGA-A8-A09C	ZNF460	SNP	Missense_Mutation	19	57802916	T	G	64	49
BRCA	TCGA-A8-A09C	GLI2	SNP	Missense_Mutation	2	121747255	C	A	26	63
BRCA	TCGA-A8-A09C	FAM123C	SNP	Nonsense_Mutation	2	131521325	C	A	28	53
BRCA	TCGA-A8-A09C	ARHGAP15	SNP	Missense_Mutation	2	144245061	A	G	13	83
BRCA	TCGA-A8-A09C	CNGA2	SNP	Silent	23	150912604	G	A	47	52
BRCA	TCGA-A8-A09C	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A09C	CADPS	SNP	Splice_Site	3	62499312	C	T	19	99
BRCA	TCGA-A8-A09C	FHDC1	SNP	Silent	4	153897755	T	G	58	36
BRCA	TCGA-A8-A09C	RFC1	SNP	Silent	4	39308263	C	G	17	49
BRCA	TCGA-A8-A09C	MUC7	SNP	Silent	4	71347001	A	C	8	49
BRCA	TCGA-A8-A09C	PDE4D	SNP	Splice_site	5	58511603	A	G	8	77
BRCA	TCGA-A8-A09C	ABCA13	SNP	Nonsense_Mutation	7	48312171	C	T	23	52
BRCA	TCGA-A8-A09C	SORBS3	DEL	Frame_Shift_Del	8	22412098	G	-	35	62
BRCA	TCGA-A8-A09C	DBH	INS	Frame_Shift_Ins	9	136513070	-	AT	26	95
BRCA	TCGA-A8-A09C	UHRF2	SNP	Splice_site	9	6460790	G	A	43	95
BRCA	TCGA-A8-A09D	TARS2	SNP	Missense_Mutation	1	150470165	T	C	62	42
BRCA	TCGA-A8-A09D	TROVE2	SNP	Silent	1	193051360	C	T	23	45
BRCA	TCGA-A8-A09D	NID1	SNP	Silent	1	236189206	C	T	26	48
BRCA	TCGA-A8-A09D	OR2T34	SNP	Silent	1	248737984	C	T	32	53
BRCA	TCGA-A8-A09D	CSMD2	SNP	Silent	1	34046410	G	A	35	64
BRCA	TCGA-A8-A09D	CCDC147	SNP	Missense_Mutation	10	106163528	G	T	35	84
BRCA	TCGA-A8-A09D	FGFR2	SNP	Missense_Mutation	10	123324990	A	G	14	84
BRCA	TCGA-A8-A09D	MUC5B	SNP	Missense_Mutation	11	1271132	C	T	18	52
BRCA	TCGA-A8-A09D	ANO5	SNP	Missense_Mutation	11	22215054	C	T	32	55
BRCA	TCGA-A8-A09D	ETNK1	SNP	Missense_Mutation	12	22797164	T	A	63	56
BRCA	TCGA-A8-A09D	GMPR2	SNP	Missense_Mutation	14	24702445	C	T	22	51
BRCA	TCGA-A8-A09D	C14orf39	SNP	Splice_Site	14	60938269	C	T	18	80
BRCA	TCGA-A8-A09D	RPS6KL1	INS	Frame_Shift_Ins	14	75377983	-	G	58	92
BRCA	TCGA-A8-A09D	SLC12A6	SNP	Missense_Mutation	15	34628702	C	T	29	51
BRCA	TCGA-A8-A09D	STAC2	SNP	Silent	17	37369272	A	C	2	42
BRCA	TCGA-A8-A09D	FTSJ3	SNP	Missense_Mutation	17	61897442	C	T	31	67
BRCA	TCGA-A8-A09D	OTOP3	SNP	Missense_Mutation	17	72937790	G	A	42	67
BRCA	TCGA-A8-A09D	ILF3	SNP	Silent	19	10781784	C	T	23	34
BRCA	TCGA-A8-A09D	ZNF536	SNP	Missense_Mutation	19	31040294	G	T	33	70
BRCA	TCGA-A8-A09D	PAK4	SNP	Missense_Mutation	19	39665579	C	G	29	77
BRCA	TCGA-A8-A09D	CEACAM5	SNP	Missense_Mutation	19	42213623	C	T	23	52
BRCA	TCGA-A8-A09D	ZNF576	SNP	Missense_Mutation	19	44103077	C	G	20	53
BRCA	TCGA-A8-A09D	ARHGAP35	DEL	Frame_Shift_Del	19	47423638	AGATTGAGCACTTGATTAGTTCTCGGTTT	-	3	71
BRCA	TCGA-A8-A09D	MUC16	SNP	Silent	19	9090876	C	A	22	48
BRCA	TCGA-A8-A09D	ZNF561	SNP	Missense_Mutation	19	9721093	T	G	51	75
BRCA	TCGA-A8-A09D	CPS1	SNP	Missense_Mutation	2	211471494	A	T	4	93
BRCA	TCGA-A8-A09D	ANKMY1	SNP	Missense_Mutation	2	241468742	C	A	28	49
BRCA	TCGA-A8-A09D	DTNB	SNP	Missense_Mutation	2	25642391	T	C	56	85
BRCA	TCGA-A8-A09D	BFSP1	SNP	Missense_Mutation	20	17475142	C	A	24	50
BRCA	TCGA-A8-A09D	KRTAP13-3	SNP	Silent	21	31798069	C	T	22	30
BRCA	TCGA-A8-A09D	ITSN1	SNP	Missense_Mutation	21	35255938	C	T	23	55
BRCA	TCGA-A8-A09D	RPL3	SNP	Missense_Mutation	22	39709721	T	G	59	91
BRCA	TCGA-A8-A09D	ANKRD28	SNP	Missense_Mutation	3	15753674	C	T	32	87
BRCA	TCGA-A8-A09D	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A09D	RFC4	DEL	Frame_Shift_Del	3	186507944	G	-	48	94
BRCA	TCGA-A8-A09D	RFC4	DEL	In_Frame_Del	3	186507946	GATAATAGA	-	45	48
BRCA	TCGA-A8-A09D	ZDHHC19	SNP	Silent	3	195937533	G	A	45	75
BRCA	TCGA-A8-A09D	PIK3R1	SNP	Silent	5	67589269	A	G	4	46
BRCA	TCGA-A8-A09D	AGGF1	SNP	Missense_Mutation	5	76348570	T	A	61	89
BRCA	TCGA-A8-A09D	BEND6	SNP	Missense_Mutation	6	56879947	C	T	29	49
BRCA	TCGA-A8-A09D	USP45	SNP	Silent	6	99887726	G	C	34	54
BRCA	TCGA-A8-A09D	TSPAN33	DEL	Frame_Shift_Del	7	128807705	CA	-	21	72
BRCA	TCGA-A8-A09D	UBR5	SNP	Silent	8	103309809	C	T	24	48
BRCA	TCGA-A8-A09D	GLIS3	SNP	Missense_Mutation	9	4118010	C	T	31	86
BRCA	TCGA-A8-A09D	NOL8	SNP	Missense_Mutation	9	95077771	C	T	30	59
BRCA	TCGA-A8-A09E	VCAM1	SNP	Missense_Mutation	1	101190191	A	T	9	53
BRCA	TCGA-A8-A09E	BCL9	SNP	Missense_Mutation	1	147092581	C	G	18	100
BRCA	TCGA-A8-A09E	CEP350	SNP	Missense_Mutation	1	180062453	C	T	20	56
BRCA	TCGA-A8-A09E	APOBEC4	SNP	Missense_Mutation	1	183617405	C	T	27	71
BRCA	TCGA-A8-A09E	FAM58B	SNP	Silent	1	200182991	G	A	48	50
BRCA	TCGA-A8-A09E	PIGV	SNP	Missense_Mutation	1	27124150	A	T	10	52
BRCA	TCGA-A8-A09E	SH3PXD2A	SNP	Silent	10	105362404	C	T	23	28
BRCA	TCGA-A8-A09E	SLC18A2	SNP	Missense_Mutation	10	119012920	C	A	30	98
BRCA	TCGA-A8-A09E	PTEN	SNP	Nonsense_Mutation	10	89653840	C	G	17	80
BRCA	TCGA-A8-A09E	DKK3	INS	Frame_Shift_Ins	11	11986224	-	A	21	53
BRCA	TCGA-A8-A09E	OR8B8	SNP	Missense_Mutation	11	124310466	G	T	44	43
BRCA	TCGA-A8-A09E	OR5T1	SNP	Missense_Mutation	11	56043133	G	T	33	40
BRCA	TCGA-A8-A09E	TNKS1BP1	DEL	Frame_Shift_Del	11	57076427	CT	-	20	67
BRCA	TCGA-A8-A09E	PPP2R5B	SNP	Nonsense_Mutation	11	64700359	G	A	41	94
BRCA	TCGA-A8-A09E	DCHS1	SNP	Missense_Mutation	11	6646655	G	A	43	83
BRCA	TCGA-A8-A09E	BRI3BP	INS	Frame_Shift_Ins	12	125509844	-	G	58	53
BRCA	TCGA-A8-A09E	KCNA6	SNP	Silent	12	4919672	C	T	24	55
BRCA	TCGA-A8-A09E	PEX5	SNP	Silent	12	7343051	G	A	35	58
BRCA	TCGA-A8-A09E	PAWR	SNP	Silent	12	79990324	G	A	46	54
BRCA	TCGA-A8-A09E	LMO7	SNP	Missense_Mutation	13	76382190	C	T	19	71
BRCA	TCGA-A8-A09E	PSMB11	SNP	Missense_Mutation	14	23511993	G	A	40	67
BRCA	TCGA-A8-A09E	TUBGCP5	SNP	Silent	15	22866766	T	A	60	82
BRCA	TCGA-A8-A09E	DTWD1	SNP	Missense_Mutation	15	49935552	C	A	17	68
BRCA	TCGA-A8-A09E	ALPK3	INS	Frame_Shift_Ins	15	85382261	-	A	23	80
BRCA	TCGA-A8-A09E	DECR2	SNP	Silent	16	461494	G	C	47	75
BRCA	TCGA-A8-A09E	WBP2	SNP	Missense_Mutation	17	73844716	T	C	56	76
BRCA	TCGA-A8-A09E	ZNF726	SNP	Missense_Mutation	19	24116032	G	A	45	44
BRCA	TCGA-A8-A09E	DACT3	SNP	Missense_Mutation	19	47151768	C	A	22	88
BRCA	TCGA-A8-A09E	FCAR	DEL	Frame_Shift_Del	19	55399582	C	-	32	49
BRCA	TCGA-A8-A09E	DUS3L	INS	Frame_Shift_Ins	19	5789306	-	C	36	54
BRCA	TCGA-A8-A09E	TTN	SNP	Missense_Mutation	2	179595715	A	G	16	93
BRCA	TCGA-A8-A09E	OBSL1	DEL	In_Frame_Del	2	220427290	CAC	-	25	57
BRCA	TCGA-A8-A09E	ADAMTS1	INS	Frame_Shift_Ins	21	28212378	-	T	27	39
BRCA	TCGA-A8-A09E	TKTL1	SNP	Missense_Mutation	23	153533679	C	A	32	67
BRCA	TCGA-A8-A09E	CXorf22	SNP	Missense_Mutation	23	35993847	G	A	48	58
BRCA	TCGA-A8-A09E	GDPD2	SNP	Missense_Mutation	23	69646733	C	A	20	58
BRCA	TCGA-A8-A09E	SETD2	SNP	Missense_Mutation	3	47059192	C	T	23	87
BRCA	TCGA-A8-A09E	MAP4	INS	Frame_Shift_Ins	3	47894422	-	G	58	55
BRCA	TCGA-A8-A09E	LRBA	SNP	Missense_Mutation	4	151392779	C	T	28	72
BRCA	TCGA-A8-A09E	KIAA0922	INS	Frame_Shift_Ins	4	154553903	-	G	23	60
BRCA	TCGA-A8-A09E	DCHS2	SNP	Missense_Mutation	4	155219117	T	A	51	43
BRCA	TCGA-A8-A09E	SORBS2	INS	Frame_Shift_Ins	4	186544746	-	T	29	100
BRCA	TCGA-A8-A09E	DMXL1	DEL	Splice_Site	5	118511027	CTACAGGTAACT	-	20	55
BRCA	TCGA-A8-A09E	CHSY3	SNP	Missense_Mutation	5	129243904	C	G	18	98
BRCA	TCGA-A8-A09E	HIST1H2AJ	SNP	Silent	6	27782498	C	T	24	50
BRCA	TCGA-A8-A09E	ZFP57	SNP	Silent	6	29640364	G	A	41	58
BRCA	TCGA-A8-A09E	EPHB6	SNP	Missense_Mutation	7	142568064	G	A	40	70
BRCA	TCGA-A8-A09E	OR6B1	SNP	Missense_Mutation	7	143701799	C	T	30	59
BRCA	TCGA-A8-A09E	KCNK9	SNP	Missense_Mutation	8	140631121	C	T	22	100
BRCA	TCGA-A8-A09E	UNC5D	SNP	Missense_Mutation	8	35544126	G	A	39	100
BRCA	TCGA-A8-A09E	ARFGEF1	SNP	Missense_Mutation	8	68179153	T	C	54	92
BRCA	TCGA-A8-A09E	IKBKAP	SNP	Missense_Mutation	9	111668755	C	T	29	78
BRCA	TCGA-A8-A09E	UCK1	INS	Frame_Shift_Ins	9	134400562	-	T	6	31
BRCA	TCGA-A8-A09G	SASS6	SNP	Missense_Mutation	1	100588021	G	A	33	90
BRCA	TCGA-A8-A09G	NTNG1	SNP	Silent	1	107691311	G	A	48	55
BRCA	TCGA-A8-A09G	MTOR	SNP	Silent	1	11307746	C	T	29	58
BRCA	TCGA-A8-A09G	FBXO6	SNP	Missense_Mutation	1	11728894	G	C	37	49
BRCA	TCGA-A8-A09G	FAM46C	SNP	Missense_Mutation	1	118166421	C	T	31	78
BRCA	TCGA-A8-A09G	TNFAIP8L2	SNP	Missense_Mutation	1	151131244	G	A	38	75
BRCA	TCGA-A8-A09G	CGN	SNP	Silent	1	151509346	C	T	29	73
BRCA	TCGA-A8-A09G	FLG	SNP	Missense_Mutation	1	152284025	G	T	40	50
BRCA	TCGA-A8-A09G	DAP3	SNP	Missense_Mutation	1	155699069	C	G	32	68
BRCA	TCGA-A8-A09G	GON4L	SNP	Missense_Mutation	1	155785664	C	G	29	82
BRCA	TCGA-A8-A09G	CD1C	SNP	Missense_Mutation	1	158261127	C	A	31	44
BRCA	TCGA-A8-A09G	ATP1A4	SNP	Missense_Mutation	1	160156095	A	G	14	74
BRCA	TCGA-A8-A09G	SLAMF1	SNP	Missense_Mutation	1	160593894	C	T	32	53
BRCA	TCGA-A8-A09G	FCGR2C	SNP	Splice_site	1	161569595	G	C	33	49
BRCA	TCGA-A8-A09G	LRRC52	SNP	Missense_Mutation	1	165513765	G	A	45	93
BRCA	TCGA-A8-A09G	RSG1	DEL	Frame_Shift_Del	1	16560219	A	-	5	40
BRCA	TCGA-A8-A09G	PAPPA2	SNP	Silent	1	176564441	G	C	45	54
BRCA	TCGA-A8-A09G	FAM5C	SNP	Missense_Mutation	1	190068000	A	T	12	51
BRCA	TCGA-A8-A09G	CFHR1	SNP	Silent	1	196799676	C	T	17	55
BRCA	TCGA-A8-A09G	NR5A2	SNP	Silent	1	200080383	C	T	31	42
BRCA	TCGA-A8-A09G	PPFIA4	SNP	Silent	1	203012602	G	A	45	61
BRCA	TCGA-A8-A09G	PPP1R15B	SNP	Silent	1	204379265	C	T	29	54
BRCA	TCGA-A8-A09G	PPP1R15B	SNP	Missense_Mutation	1	204380369	C	G	32	61
BRCA	TCGA-A8-A09G	DSTYK	SNP	Silent	1	205156711	G	A	45	55
BRCA	TCGA-A8-A09G	USH2A	SNP	Missense_Mutation	1	215932030	G	C	45	89
BRCA	TCGA-A8-A09G	USH2A	SNP	Silent	1	215933100	G	C	37	62
BRCA	TCGA-A8-A09G	RRP15	SNP	Nonsense_Mutation	1	218480877	C	G	29	79
BRCA	TCGA-A8-A09G	FBXO28	SNP	Missense_Mutation	1	224341019	G	A	33	100
BRCA	TCGA-A8-A09G	KIAA1804	SNP	Splice_site	1	233497799	G	C	41	98
BRCA	TCGA-A8-A09G	RYR2	SNP	Nonsense_Mutation	1	237753282	C	G	29	70
BRCA	TCGA-A8-A09G	SDCCAG8	SNP	Missense_Mutation	1	243542029	G	C	33	83
BRCA	TCGA-A8-A09G	ZNF238	SNP	Missense_Mutation	1	244217588	G	C	41	81
BRCA	TCGA-A8-A09G	ZNF124	SNP	Silent	1	247320336	A	G	8	52
BRCA	TCGA-A8-A09G	OR2L3	DEL	Frame_Shift_Del	1	248224911	G	-	47	51
BRCA	TCGA-A8-A09G	SESN2	SNP	Missense_Mutation	1	28601371	C	G	30	60
BRCA	TCGA-A8-A09G	S100PBP	SNP	Missense_Mutation	1	33292196	G	C	45	65
BRCA	TCGA-A8-A09G	TRAPPC3	SNP	Silent	1	36603571	G	A	45	60
BRCA	TCGA-A8-A09G	FAAH	SNP	Missense_Mutation	1	46872031	C	A	29	71
BRCA	TCGA-A8-A09G	TMEM48	SNP	Nonsense_Mutation	1	54293790	G	A	45	92
BRCA	TCGA-A8-A09G	TTC4	SNP	Missense_Mutation	1	55194063	G	C	33	72
BRCA	TCGA-A8-A09G	INADL	SNP	Missense_Mutation	1	62321852	G	A	41	73
BRCA	TCGA-A8-A09G	INADL	SNP	Missense_Mutation	1	62330295	C	G	24	58
BRCA	TCGA-A8-A09G	EFCAB7	SNP	Nonsense_Mutation	1	64011606	C	G	29	73
BRCA	TCGA-A8-A09G	ELTD1	SNP	Missense_Mutation	1	79357213	C	G	32	78
BRCA	TCGA-A8-A09G	ZDHHC6	SNP	Missense_Mutation	10	114205164	C	G	29	86
BRCA	TCGA-A8-A09G	TACC2	SNP	Missense_Mutation	10	123842458	G	A	41	52
BRCA	TCGA-A8-A09G	TACC2	SNP	Nonsense_Mutation	10	123842484	G	T	45	56
BRCA	TCGA-A8-A09G	TACC2	SNP	Missense_Mutation	10	123842796	G	A	33	56
BRCA	TCGA-A8-A09G	TACC2	SNP	Missense_Mutation	10	123843603	G	A	34	57
BRCA	TCGA-A8-A09G	TACC2	SNP	Missense_Mutation	10	123844256	G	A	47	25
BRCA	TCGA-A8-A09G	TACC2	SNP	Missense_Mutation	10	123844803	G	C	33	45
BRCA	TCGA-A8-A09G	TACC2	SNP	Missense_Mutation	10	123846143	G	C	41	52
BRCA	TCGA-A8-A09G	DMBT1	SNP	Missense_Mutation	10	124351025	C	T	31	51
BRCA	TCGA-A8-A09G	BCCIP	SNP	Missense_Mutation	10	127519144	C	T	29	65
BRCA	TCGA-A8-A09G	CCDC3	SNP	Splice_site	10	12940677	G	C	45	64
BRCA	TCGA-A8-A09G	ZNF438	SNP	Splice_site	10	31133891	C	A	29	72
BRCA	TCGA-A8-A09G	ALOX5	SNP	Nonsense_Mutation	10	45938925	G	T	41	96
BRCA	TCGA-A8-A09G	FAM208B	SNP	Nonsense_Mutation	10	5788358	C	T	29	52
BRCA	TCGA-A8-A09G	OIT3	SNP	Silent	10	74692229	C	T	32	50
BRCA	TCGA-A8-A09G	TTC18	SNP	Missense_Mutation	10	75113458	C	T	32	84
BRCA	TCGA-A8-A09G	USP54	SNP	Missense_Mutation	10	75290495	C	T	31	78
BRCA	TCGA-A8-A09G	AP3M1	SNP	Silent	10	75889680	G	C	33	52
BRCA	TCGA-A8-A09G	FGFBP3	SNP	Splice_site	10	93667949	C	G	32	55
BRCA	TCGA-A8-A09G	BLNK	SNP	Silent	10	97951825	G	A	45	48
BRCA	TCGA-A8-A09G	MMP27	SNP	Missense_Mutation	11	102573508	C	T	29	98
BRCA	TCGA-A8-A09G	MMP27	SNP	Missense_Mutation	11	102573514	C	G	29	98
BRCA	TCGA-A8-A09G	MMP10	SNP	Missense_Mutation	11	102650299	C	G	29	97
BRCA	TCGA-A8-A09G	C2CD2L	SNP	Silent	11	118983080	G	C	45	51
BRCA	TCGA-A8-A09G	VWA5A	SNP	Silent	11	123994096	G	A	33	95
BRCA	TCGA-A8-A09G	CKAP5	SNP	Missense_Mutation	11	46772688	C	T	32	100
BRCA	TCGA-A8-A09G	OR4C13	SNP	Silent	11	49974337	T	C	51	54
BRCA	TCGA-A8-A09G	OR5D13	SNP	Nonsense_Mutation	11	55540972	C	G	29	63
BRCA	TCGA-A8-A09G	OR10AG1	SNP	Missense_Mutation	11	55735366	C	T	17	33
BRCA	TCGA-A8-A09G	ACTN3	SNP	Silent	11	66328136	G	A	33	71
BRCA	TCGA-A8-A09G	SPTBN2	SNP	Nonsense_Mutation	11	66468703	G	C	45	95
BRCA	TCGA-A8-A09G	ARAP1	SNP	Missense_Mutation	11	72410547	C	G	29	98
BRCA	TCGA-A8-A09G	SPIC	SNP	Missense_Mutation	12	101876615	C	G	32	63
BRCA	TCGA-A8-A09G	KLRK1	SNP	Missense_Mutation	12	10531194	G	C	45	56
BRCA	TCGA-A8-A09G	PRR4	SNP	Missense_Mutation	12	11001988	G	C	45	67
BRCA	TCGA-A8-A09G	P2RX4	SNP	Missense_Mutation	12	121670251	G	A	37	80
BRCA	TCGA-A8-A09G	CCDC62	SNP	Missense_Mutation	12	123290727	C	T	32	53
BRCA	TCGA-A8-A09G	DUSP16	SNP	Nonsense_Mutation	12	12630056	G	C	45	76
BRCA	TCGA-A8-A09G	DUSP16	SNP	Nonsense_Mutation	12	12630252	G	A	37	73
BRCA	TCGA-A8-A09G	GOLGA3	SNP	Silent	12	133384794	G	A	45	57
BRCA	TCGA-A8-A09G	ZNF268	SNP	Missense_Mutation	12	133780851	G	A	33	60
BRCA	TCGA-A8-A09G	CACNA1C	SNP	Missense_Mutation	12	2743501	G	T	45	85
BRCA	TCGA-A8-A09G	KRT18	SNP	Missense_Mutation	12	53343222	G	A	37	91
BRCA	TCGA-A8-A09G	ERBB3	SNP	Missense_Mutation	12	56490928	C	G	32	65
BRCA	TCGA-A8-A09G	ERBB3	SNP	Missense_Mutation	12	56492633	A	G	11	92
BRCA	TCGA-A8-A09G	SCNN1A	SNP	Missense_Mutation	12	6458367	G	C	33	76
BRCA	TCGA-A8-A09G	CPSF6	SNP	Missense_Mutation	12	69656161	G	A	37	88
BRCA	TCGA-A8-A09G	ATP2B1	SNP	Silent	12	90003786	C	T	24	59
BRCA	TCGA-A8-A09G	ABCC4	SNP	Missense_Mutation	13	95899945	G	A	45	70
BRCA	TCGA-A8-A09G	RNASE9	SNP	Nonsense_Mutation	14	21024983	G	T	36	47
BRCA	TCGA-A8-A09G	MYH7	SNP	Silent	14	23884898	C	T	30	53
BRCA	TCGA-A8-A09G	EIF2B2	SNP	Missense_Mutation	14	75470270	G	A	37	100
BRCA	TCGA-A8-A09G	ALKBH1	SNP	Missense_Mutation	14	78140379	C	G	32	59
BRCA	TCGA-A8-A09G	DIO2	SNP	Silent	14	80677773	G	A	33	69
BRCA	TCGA-A8-A09G	TRIP11	SNP	Missense_Mutation	14	92465767	A	G	13	76
BRCA	TCGA-A8-A09G	SERPINA5	SNP	Missense_Mutation	14	95053915	C	G	32	55
BRCA	TCGA-A8-A09G	GABRG3	SNP	Missense_Mutation	15	27725853	C	T	28	99
BRCA	TCGA-A8-A09G	RYR3	SNP	Missense_Mutation	15	33952600	C	T	27	98
BRCA	TCGA-A8-A09G	DISP2	SNP	Nonsense_Mutation	15	40659881	C	G	29	87
BRCA	TCGA-A8-A09G	SLC30A4	SNP	Missense_Mutation	15	45778900	C	G	29	68
BRCA	TCGA-A8-A09G	GCOM1	SNP	Silent	15	57931737	C	T	31	46
BRCA	TCGA-A8-A09G	TLN2	SNP	Missense_Mutation	15	62990048	G	A	37	71
BRCA	TCGA-A8-A09G	ACAN	SNP	Silent	15	89398480	G	A	43	52
BRCA	TCGA-A8-A09G	PLK1	SNP	Missense_Mutation	16	23692315	C	G	30	92
BRCA	TCGA-A8-A09G	SEZ6L2	SNP	Silent	16	29907123	C	A	30	53
BRCA	TCGA-A8-A09G	SRCAP	SNP	Missense_Mutation	16	30747578	G	A	45	98
BRCA	TCGA-A8-A09G	THOC6	SNP	Silent	16	3075810	G	A	33	92
BRCA	TCGA-A8-A09G	ITGAX	SNP	Silent	16	31374515	C	G	32	54
BRCA	TCGA-A8-A09G	SLC6A10P	SNP	Missense_Mutation	16	32891004	G	A	45	83
BRCA	TCGA-A8-A09G	ZFHX3	SNP	Missense_Mutation	16	72923839	C	G	18	86
BRCA	TCGA-A8-A09G	RHOT1	SNP	Missense_Mutation	17	30503029	G	A	45	86
BRCA	TCGA-A8-A09G	RPL19	SNP	Missense_Mutation	17	37359326	G	A	33	99
BRCA	TCGA-A8-A09G	PSMD3	SNP	Silent	17	38140650	C	T	29	54
BRCA	TCGA-A8-A09G	TUBG2	SNP	Missense_Mutation	17	40811929	G	A	37	83
BRCA	TCGA-A8-A09G	MEOX1	SNP	Missense_Mutation	17	41738538	C	T	26	63
BRCA	TCGA-A8-A09G	GFAP	SNP	Missense_Mutation	17	42990641	G	A	41	99
BRCA	TCGA-A8-A09G	MED13	SNP	Missense_Mutation	17	60043906	T	A	62	89
BRCA	TCGA-A8-A09G	KCNH6	SNP	Missense_Mutation	17	61622443	G	C	41	94
BRCA	TCGA-A8-A09G	NLGN2	SNP	Missense_Mutation	17	7319011	G	C	45	96
BRCA	TCGA-A8-A09G	RNF213	DEL	Frame_Shift_Del	17	78318546	G	-	35	46
BRCA	TCGA-A8-A09G	NPTX1	SNP	Missense_Mutation	17	78447148	A	T	8	87
BRCA	TCGA-A8-A09G	CCDC137	SNP	Missense_Mutation	17	79634810	G	C	33	49
BRCA	TCGA-A8-A09G	ABR	SNP	Missense_Mutation	17	959301	G	A	33	85
BRCA	TCGA-A8-A09G	IMPACT	SNP	Missense_Mutation	18	22007922	G	C	41	86
BRCA	TCGA-A8-A09G	DSEL	SNP	Silent	18	65179785	G	A	45	61
BRCA	TCGA-A8-A09G	SYDE1	SNP	Missense_Mutation	19	15224573	C	A	30	53
BRCA	TCGA-A8-A09G	TMEM38A	SNP	Nonsense_Mutation	19	16799102	C	T	29	57
BRCA	TCGA-A8-A09G	USE1	SNP	Silent	19	17330616	C	G	29	49
BRCA	TCGA-A8-A09G	GRAMD1A	SNP	Missense_Mutation	19	35512464	G	A	45	92
BRCA	TCGA-A8-A09G	ZNF527	SNP	Missense_Mutation	19	37880530	G	A	45	53
BRCA	TCGA-A8-A09G	ZNF781	SNP	Missense_Mutation	19	38160656	A	C	1	59
BRCA	TCGA-A8-A09G	ZNF573	SNP	Nonsense_Mutation	19	38230531	G	C	45	83
BRCA	TCGA-A8-A09G	ACTN4	SNP	Missense_Mutation	19	39217651	G	A	37	94
BRCA	TCGA-A8-A09G	BCKDHA	SNP	Missense_Mutation	19	41928172	C	A	29	82
BRCA	TCGA-A8-A09G	GPR77	SNP	Missense_Mutation	19	47845056	G	A	41	81
BRCA	TCGA-A8-A09G	TICAM1	SNP	Missense_Mutation	19	4817009	C	G	31	47
BRCA	TCGA-A8-A09G	KLK6	SNP	Missense_Mutation	19	51466645	C	T	29	49
BRCA	TCGA-A8-A09G	KLK12	SNP	Missense_Mutation	19	51532698	G	A	43	84
BRCA	TCGA-A8-A09G	SIGLEC7	SNP	Missense_Mutation	19	51647792	C	G	32	66
BRCA	TCGA-A8-A09G	ZNF808	SNP	Missense_Mutation	19	53057682	C	G	29	83
BRCA	TCGA-A8-A09G	LILRA2	SNP	Silent	19	55098711	C	A	29	52
BRCA	TCGA-A8-A09G	PEG3	SNP	Missense_Mutation	19	57327706	C	T	29	63
BRCA	TCGA-A8-A09G	ZNF547	SNP	Missense_Mutation	19	57889020	C	G	29	38
BRCA	TCGA-A8-A09G	C19orf59	SNP	Missense_Mutation	19	7743274	G	C	41	58
BRCA	TCGA-A8-A09G	MUC16	SNP	Missense_Mutation	19	9026209	C	G	32	50
BRCA	TCGA-A8-A09G	MUC16	SNP	Missense_Mutation	19	9048939	G	C	33	28
BRCA	TCGA-A8-A09G	MUC16	SNP	Silent	19	9064816	A	G	4	44
BRCA	TCGA-A8-A09G	NCK2	SNP	Silent	2	106509512	C	T	32	57
BRCA	TCGA-A8-A09G	NTSR2	SNP	Silent	2	11800210	G	A	46	54
BRCA	TCGA-A8-A09G	WDR33	SNP	Missense_Mutation	2	128463946	G	C	33	90
BRCA	TCGA-A8-A09G	UGGT1	SNP	Missense_Mutation	2	128944345	C	G	32	100
BRCA	TCGA-A8-A09G	MCM6	SNP	Splice_site	2	136598406	C	G	29	69
BRCA	TCGA-A8-A09G	ZEB2	SNP	Missense_Mutation	2	145147383	C	T	31	100
BRCA	TCGA-A8-A09G	LYPD6	SNP	Nonsense_Mutation	2	150325179	C	T	29	84
BRCA	TCGA-A8-A09G	FMNL2	SNP	Splice_site	2	153488524	C	G	32	51
BRCA	TCGA-A8-A09G	PKP4	SNP	Missense_Mutation	2	159481927	G	C	33	81
BRCA	TCGA-A8-A09G	SCN2A	SNP	Silent	2	166170594	G	A	45	50
BRCA	TCGA-A8-A09G	LRP2	SNP	Missense_Mutation	2	170082970	C	G	29	100
BRCA	TCGA-A8-A09G	RAPGEF4	SNP	Missense_Mutation	2	173885435	G	A	37	98
BRCA	TCGA-A8-A09G	GPR155	SNP	Missense_Mutation	2	175337813	C	T	30	97
BRCA	TCGA-A8-A09G	TTN	SNP	Missense_Mutation	2	179414943	C	G	30	100
BRCA	TCGA-A8-A09G	TTN	SNP	Silent	2	179417111	C	T	29	56
BRCA	TCGA-A8-A09G	TTN	SNP	Missense_Mutation	2	179417322	C	G	32	80
BRCA	TCGA-A8-A09G	TTN	SNP	Missense_Mutation	2	179417407	C	T	29	80
BRCA	TCGA-A8-A09G	TTN	SNP	Missense_Mutation	2	179419748	C	T	32	100
BRCA	TCGA-A8-A09G	TTN	SNP	Missense_Mutation	2	179605967	A	G	10	91
BRCA	TCGA-A8-A09G	MYO1B	SNP	Missense_Mutation	2	192257811	G	A	33	100
BRCA	TCGA-A8-A09G	CCDC150	SNP	Missense_Mutation	2	197531552	C	T	29	61
BRCA	TCGA-A8-A09G	PLEKHM3	SNP	Silent	2	208841568	C	T	29	68
BRCA	TCGA-A8-A09G	COL6A3	SNP	Missense_Mutation	2	238280722	C	A	26	100
BRCA	TCGA-A8-A09G	HDAC4	SNP	Missense_Mutation	2	240003825	G	C	33	74
BRCA	TCGA-A8-A09G	IFT172	SNP	Missense_Mutation	2	27672946	G	C	45	66
BRCA	TCGA-A8-A09G	THADA	SNP	Missense_Mutation	2	43657437	T	A	58	61
BRCA	TCGA-A8-A09G	GFPT1	SNP	Missense_Mutation	2	69601147	C	A	29	97
BRCA	TCGA-A8-A09G	ATP6V1B1	SNP	Missense_Mutation	2	71186192	G	A	36	53
BRCA	TCGA-A8-A09G	CCDC142	SNP	Missense_Mutation	2	74709786	G	A	39	46
BRCA	TCGA-A8-A09G	LRRTM4	SNP	Missense_Mutation	2	77746900	C	T	32	68
BRCA	TCGA-A8-A09G	KANSL3	SNP	Missense_Mutation	2	97279281	G	C	33	75
BRCA	TCGA-A8-A09G	FLRT3	SNP	Nonsense_Mutation	20	14307923	G	C	45	100
BRCA	TCGA-A8-A09G	NINL	SNP	Missense_Mutation	20	25442244	C	G	29	74
BRCA	TCGA-A8-A09G	CPXM1	SNP	Missense_Mutation	20	2776783	C	G	31	56
BRCA	TCGA-A8-A09G	C20orf194	SNP	Silent	20	3275242	C	G	29	66
BRCA	TCGA-A8-A09G	ZNF831	SNP	Silent	20	57769623	C	A	29	49
BRCA	TCGA-A8-A09G	DIDO1	SNP	Missense_Mutation	20	61542600	C	G	32	53
BRCA	TCGA-A8-A09G	CECR2	SNP	Missense_Mutation	22	17978481	G	A	45	84
BRCA	TCGA-A8-A09G	DGCR14	SNP	Missense_Mutation	22	19127373	C	G	29	72
BRCA	TCGA-A8-A09G	DGCR14	SNP	Missense_Mutation	22	19130257	G	A	39	58
BRCA	TCGA-A8-A09G	CCDC117	SNP	Silent	22	29177137	G	A	41	54
BRCA	TCGA-A8-A09G	NF2	SNP	Missense_Mutation	22	30069291	G	A	45	100
BRCA	TCGA-A8-A09G	NF2	SNP	Silent	22	30069335	G	A	33	88
BRCA	TCGA-A8-A09G	RFPL3	SNP	Missense_Mutation	22	32754312	C	G	32	55
BRCA	TCGA-A8-A09G	GCAT	SNP	Missense_Mutation	22	38206084	G	A	45	59
BRCA	TCGA-A8-A09G	XKRX	SNP	Missense_Mutation	23	100183269	C	G	29	58
BRCA	TCGA-A8-A09G	COL4A6	SNP	Missense_Mutation	23	107435807	T	C	52	57
BRCA	TCGA-A8-A09G	CAPN6	SNP	Missense_Mutation	23	110489936	C	G	30	59
BRCA	TCGA-A8-A09G	CUL4B	SNP	Missense_Mutation	23	119660675	C	T	29	97
BRCA	TCGA-A8-A09G	SAGE1	SNP	Missense_Mutation	23	134987483	C	T	29	47
BRCA	TCGA-A8-A09G	PLXNA3	SNP	Missense_Mutation	23	153689550	G	A	40	77
BRCA	TCGA-A8-A09G	MAGEB10	SNP	Missense_Mutation	23	27839430	C	G	31	47
BRCA	TCGA-A8-A09G	FAM123B	SNP	Missense_Mutation	23	63413064	C	T	29	59
BRCA	TCGA-A8-A09G	MTMR8	SNP	Missense_Mutation	23	63445342	G	T	45	39
BRCA	TCGA-A8-A09G	DLG3	SNP	Missense_Mutation	23	69669608	A	T	11	70
BRCA	TCGA-A8-A09G	NAP1L3	SNP	Silent	23	92927869	A	G	16	53
BRCA	TCGA-A8-A09G	ITGB5	SNP	Missense_Mutation	3	124560333	C	G	32	69
BRCA	TCGA-A8-A09G	PPP2R3A	SNP	Missense_Mutation	3	135825064	G	C	45	97
BRCA	TCGA-A8-A09G	AADACL2	DEL	Frame_Shift_Del	3	151474795	G	-	45	61
BRCA	TCGA-A8-A09G	RFTN1	SNP	Missense_Mutation	3	16450944	C	G	32	77
BRCA	TCGA-A8-A09G	EIF4A2	SNP	Missense_Mutation	3	186504030	G	C	45	92
BRCA	TCGA-A8-A09G	EIF4A2	DEL	Frame_Shift_Del	3	186504350	GA	-	45	92
BRCA	TCGA-A8-A09G	WDR53	SNP	Silent	3	196287993	G	A	45	58
BRCA	TCGA-A8-A09G	CHL1	SNP	Missense_Mutation	3	423864	G	A	48	59
BRCA	TCGA-A8-A09G	SLC25A20	SNP	Missense_Mutation	3	48896002	C	T	24	100
BRCA	TCGA-A8-A09G	RHOA	SNP	Missense_Mutation	3	49412905	C	G	29	100
BRCA	TCGA-A8-A09G	C3orf74	SNP	Missense_Mutation	3	52097254	G	A	48	41
BRCA	TCGA-A8-A09G	RPP14	SNP	Missense_Mutation	3	58296293	C	T	31	55
BRCA	TCGA-A8-A09G	CRYBG3	SNP	Missense_Mutation	3	97600022	C	A	17	59
BRCA	TCGA-A8-A09G	DDIT4L	SNP	Missense_Mutation	4	101111134	C	T	25	82
BRCA	TCGA-A8-A09G	ARFIP1	SNP	Missense_Mutation	4	153802210	G	C	33	72
BRCA	TCGA-A8-A09G	SPATA4	SNP	Missense_Mutation	4	177113882	G	A	45	79
BRCA	TCGA-A8-A09G	GPR125	SNP	Silent	4	22390354	C	T	29	57
BRCA	TCGA-A8-A09G	HTT	SNP	Silent	4	3134377	C	T	29	41
BRCA	TCGA-A8-A09G	WDFY3	INS	Frame_Shift_Ins	4	85687113	-	T	48	100
BRCA	TCGA-A8-A09G	PAM	SNP	Silent	5	102343195	C	T	29	72
BRCA	TCGA-A8-A09G	AFF4	SNP	Missense_Mutation	5	132224807	G	C	33	79
BRCA	TCGA-A8-A09G	CDKL3	SNP	Missense_Mutation	5	133657539	G	C	41	78
BRCA	TCGA-A8-A09G	PCDHGA9	SNP	Nonsense_Mutation	5	140784572	G	T	41	60
BRCA	TCGA-A8-A09G	TCERG1	SNP	Silent	5	145888737	C	T	29	63
BRCA	TCGA-A8-A09G	FAT2	SNP	Missense_Mutation	5	150935931	C	G	32	91
BRCA	TCGA-A8-A09G	GRIA1	SNP	Missense_Mutation	5	153190725	G	A	46	77
BRCA	TCGA-A8-A09G	GMCL1L	SNP	Missense_Mutation	5	177613008	G	C	45	61
BRCA	TCGA-A8-A09G	ERBB2IP	SNP	Missense_Mutation	5	65338994	G	A	45	98
BRCA	TCGA-A8-A09G	TNPO1	SNP	Nonsense_Mutation	5	72151660	C	T	29	95
BRCA	TCGA-A8-A09G	TNPO1	SNP	Silent	5	72161500	C	T	29	56
BRCA	TCGA-A8-A09G	GPR98	SNP	Missense_Mutation	5	90079129	G	A	45	89
BRCA	TCGA-A8-A09G	GRIK2	SNP	Missense_Mutation	6	102124591	A	G	1	79
BRCA	TCGA-A8-A09G	FRK	SNP	Silent	6	116289838	G	A	45	48
BRCA	TCGA-A8-A09G	LAMA2	SNP	Missense_Mutation	6	129513923	C	G	29	63
BRCA	TCGA-A8-A09G	DTNBP1	SNP	Missense_Mutation	6	15524673	G	C	42	42
BRCA	TCGA-A8-A09G	LRRC16A	SNP	Silent	6	25500451	C	T	29	70
BRCA	TCGA-A8-A09G	DHX16	SNP	Missense_Mutation	6	30624478	C	A	27	98
BRCA	TCGA-A8-A09G	CLIC1	SNP	Missense_Mutation	6	31701957	G	T	45	61
BRCA	TCGA-A8-A09G	SLC22A23	SNP	Missense_Mutation	6	3298444	G	A	43	90
BRCA	TCGA-A8-A09G	BAK1	SNP	Missense_Mutation	6	33541599	C	T	31	64
BRCA	TCGA-A8-A09G	DNAH8	SNP	Missense_Mutation	6	38950129	G	A	37	100
BRCA	TCGA-A8-A09G	MEP1A	SNP	Missense_Mutation	6	46761439	C	T	29	58
BRCA	TCGA-A8-A09G	KIAA1009	SNP	Missense_Mutation	6	84871614	C	T	29	73
BRCA	TCGA-A8-A09G	ZCWPW1	SNP	Missense_Mutation	7	100016761	G	C	33	66
BRCA	TCGA-A8-A09G	DNAH11	SNP	Missense_Mutation	7	21640303	G	C	41	68
BRCA	TCGA-A8-A09G	SFRP4	SNP	Missense_Mutation	7	37951790	G	C	33	98
BRCA	TCGA-A8-A09G	ASL	SNP	Missense_Mutation	7	65557588	C	G	29	57
BRCA	TCGA-A8-A09G	STYXL1	SNP	Missense_Mutation	7	75634621	C	G	29	80
BRCA	TCGA-A8-A09G	ABCB1	SNP	Silent	7	87225097	G	A	45	51
BRCA	TCGA-A8-A09G	SAMD9L	SNP	Missense_Mutation	7	92764322	G	C	33	58
BRCA	TCGA-A8-A09G	ZNF3	SNP	Silent	7	99669144	G	A	45	58
BRCA	TCGA-A8-A09G	RGS22	SNP	Missense_Mutation	8	101020623	C	T	30	87
BRCA	TCGA-A8-A09G	LONRF1	SNP	Missense_Mutation	8	12598445	G	A	36	67
BRCA	TCGA-A8-A09G	CHMP7	SNP	Missense_Mutation	8	23116332	C	G	29	96
BRCA	TCGA-A8-A09G	ESRP1	SNP	Missense_Mutation	8	95654281	C	G	31	61
BRCA	TCGA-A8-A09G	BAAT	SNP	Missense_Mutation	9	104133644	C	T	29	74
BRCA	TCGA-A8-A09G	IKBKAP	SNP	Missense_Mutation	9	111668605	C	T	32	52
BRCA	TCGA-A8-A09G	IKBKAP	SNP	Missense_Mutation	9	111670591	C	T	32	53
BRCA	TCGA-A8-A09G	KIAA0368	SNP	Silent	9	114156470	G	C	45	56
BRCA	TCGA-A8-A09G	C5	SNP	Missense_Mutation	9	123785712	G	T	41	62
BRCA	TCGA-A8-A09G	SWI5	SNP	Splice_site	9	131050994	G	C	45	57
BRCA	TCGA-A8-A09G	MPDZ	SNP	Missense_Mutation	9	13222437	C	T	32	67
BRCA	TCGA-A8-A09G	C9orf93	SNP	Missense_Mutation	9	15744289	G	A	45	75
BRCA	TCGA-A8-A09G	IFNK	SNP	Missense_Mutation	9	27524397	C	A	29	48
BRCA	TCGA-A8-A09G	CNTNAP3B	SNP	Silent	9	43822569	C	T	32	67
BRCA	TCGA-A8-A09I	ATP1A2	SNP	Missense_Mutation	1	160099959	G	A	38	95
BRCA	TCGA-A8-A09I	PPOX	SNP	Missense_Mutation	1	161140244	G	C	43	87
BRCA	TCGA-A8-A09I	SPEN	INS	Frame_Shift_Ins	1	16255129	-	C	50	51
BRCA	TCGA-A8-A09I	DDR2	SNP	Silent	1	162746031	G	A	47	74
BRCA	TCGA-A8-A09I	F5	SNP	Missense_Mutation	1	169519203	A	T	13	90
BRCA	TCGA-A8-A09I	F5	SNP	Missense_Mutation	1	169525950	C	T	27	100
BRCA	TCGA-A8-A09I	HMCN1	SNP	Missense_Mutation	1	185958690	C	T	29	97
BRCA	TCGA-A8-A09I	ASPM	SNP	Missense_Mutation	1	197065231	G	C	45	81
BRCA	TCGA-A8-A09I	CNTN2	SNP	Splice_site	1	205038689	G	A	39	77
BRCA	TCGA-A8-A09I	PLXNA2	SNP	Missense_Mutation	1	208391168	C	T	23	56
BRCA	TCGA-A8-A09I	SMYD3	SNP	Nonsense_Mutation	1	246490556	G	A	48	85
BRCA	TCGA-A8-A09I	KDM4A	SNP	Missense_Mutation	1	44134883	G	A	45	86
BRCA	TCGA-A8-A09I	LPHN2	SNP	Missense_Mutation	1	82408979	G	A	37	100
BRCA	TCGA-A8-A09I	KIAA1107	SNP	Missense_Mutation	1	92647295	G	C	37	64
BRCA	TCGA-A8-A09I	PSD	SNP	Missense_Mutation	10	104170687	C	T	29	94
BRCA	TCGA-A8-A09I	STOX1	SNP	Missense_Mutation	10	70644505	G	A	38	100
BRCA	TCGA-A8-A09I	UNC5B	SNP	Silent	10	73048335	G	A	40	37
BRCA	TCGA-A8-A09I	ECD	SNP	Missense_Mutation	10	74894479	G	C	44	59
BRCA	TCGA-A8-A09I	MYOF	SNP	Silent	10	95072846	G	C	33	53
BRCA	TCGA-A8-A09I	MYOF	SNP	Missense_Mutation	10	95185852	C	T	23	82
BRCA	TCGA-A8-A09I	PLCE1	SNP	Missense_Mutation	10	96018630	G	A	33	98
BRCA	TCGA-A8-A09I	ZBTB16	SNP	Missense_Mutation	11	113935031	T	G	60	57
BRCA	TCGA-A8-A09I	OR4A47	SNP	Silent	11	48511196	C	A	32	50
BRCA	TCGA-A8-A09I	ENSG00000205046	SNP	Missense_Mutation	11	51458848	A	G	6	54
BRCA	TCGA-A8-A09I	OR56A5	SNP	Missense_Mutation	11	5989153	G	A	33	67
BRCA	TCGA-A8-A09I	TRIM66	SNP	Missense_Mutation	11	8642703	C	A	28	66
BRCA	TCGA-A8-A09I	TRIM49	SNP	Missense_Mutation	11	89537373	C	G	29	65
BRCA	TCGA-A8-A09I	ALDH1L2	SNP	Missense_Mutation	12	105467686	A	G	14	92
BRCA	TCGA-A8-A09I	HCAR2	SNP	Silent	12	123187141	G	A	45	52
BRCA	TCGA-A8-A09I	DHX37	SNP	Missense_Mutation	12	125435302	A	T	1	70
BRCA	TCGA-A8-A09I	NAB2	SNP	Splice_site	12	57484909	C	A	26	70
BRCA	TCGA-A8-A09I	MYO16	DEL	In_Frame_Del	13	109445934	CTT	-	20	56
BRCA	TCGA-A8-A09I	SACS	SNP	Missense_Mutation	13	23906002	G	A	36	66
BRCA	TCGA-A8-A09I	NUPL1	SNP	Missense_Mutation	13	25889548	A	T	2	44
BRCA	TCGA-A8-A09I	NUFIP1	SNP	Silent	13	45554947	C	T	24	54
BRCA	TCGA-A8-A09I	CAB39L	SNP	Silent	13	49925033	C	T	32	70
BRCA	TCGA-A8-A09I	HAUS4	SNP	Missense_Mutation	14	23419608	C	G	30	54
BRCA	TCGA-A8-A09I	PCK2	SNP	Silent	14	24572735	C	T	19	29
BRCA	TCGA-A8-A09I	ZNF770	SNP	Missense_Mutation	15	35273900	C	T	30	60
BRCA	TCGA-A8-A09I	RPAP1	SNP	Missense_Mutation	15	41823388	A	T	2	72
BRCA	TCGA-A8-A09I	MGA	SNP	Missense_Mutation	15	42003252	C	G	32	61
BRCA	TCGA-A8-A09I	ADAMTSL3	SNP	Silent	15	84611516	C	A	28	56
BRCA	TCGA-A8-A09I	ZSCAN2	SNP	Missense_Mutation	15	85165048	G	A	39	55
BRCA	TCGA-A8-A09I	ZNF710	SNP	Missense_Mutation	15	90610490	G	A	37	69
BRCA	TCGA-A8-A09I	GSPT1	SNP	Missense_Mutation	16	11980419	A	G	3	84
BRCA	TCGA-A8-A09I	HS3ST2	SNP	Missense_Mutation	16	22926408	G	A	40	84
BRCA	TCGA-A8-A09I	ALDOA	SNP	Missense_Mutation	16	30081176	G	C	33	100
BRCA	TCGA-A8-A09I	SIAH1	SNP	Missense_Mutation	16	48396375	T	C	49	48
BRCA	TCGA-A8-A09I	SLC7A6OS	SNP	Missense_Mutation	16	68335255	G	C	38	59
BRCA	TCGA-A8-A09I	FANCA	SNP	Missense_Mutation	16	89877135	G	C	45	66
BRCA	TCGA-A8-A09I	NCOR1	SNP	Nonsense_Mutation	17	15975531	G	A	39	76
BRCA	TCGA-A8-A09I	SLC6A4	SNP	Splice_site	17	28538331	G	A	40	99
BRCA	TCGA-A8-A09I	FNDC8	SNP	Silent	17	33456560	C	T	29	75
BRCA	TCGA-A8-A09I	GPATCH8	SNP	Missense_Mutation	17	42477554	C	G	30	75
BRCA	TCGA-A8-A09I	C17orf104	SNP	Missense_Mutation	17	42744610	T	C	64	66
BRCA	TCGA-A8-A09I	SLC25A11	SNP	Silent	17	4842372	C	G	29	48
BRCA	TCGA-A8-A09I	RAD51C	SNP	Missense_Mutation	17	56811530	G	C	33	75
BRCA	TCGA-A8-A09I	LLGL2	SNP	Missense_Mutation	17	73564904	G	C	41	86
BRCA	TCGA-A8-A09I	KLHL14	SNP	Silent	18	30321922	G	A	40	46
BRCA	TCGA-A8-A09I	DLGAP1	SNP	Silent	18	3879838	C	T	27	49
BRCA	TCGA-A8-A09I	SETBP1	SNP	Missense_Mutation	18	42643228	G	C	33	61
BRCA	TCGA-A8-A09I	TSHZ1	SNP	Missense_Mutation	18	72998075	C	T	30	25
BRCA	TCGA-A8-A09I	CIRBP	SNP	Missense_Mutation	19	1272368	G	A	44	60
BRCA	TCGA-A8-A09I	WDR83	SNP	Missense_Mutation	19	12783926	G	T	43	95
BRCA	TCGA-A8-A09I	IL12RB1	SNP	Silent	19	18180447	C	T	19	24
BRCA	TCGA-A8-A09I	PRODH2	SNP	Silent	19	36303324	G	A	45	14
BRCA	TCGA-A8-A09I	SHD	SNP	Missense_Mutation	19	4284824	G	T	35	60
BRCA	TCGA-A8-A09I	CA11	SNP	Nonsense_Mutation	19	49142645	G	A	45	59
BRCA	TCGA-A8-A09I	SIGLEC5	SNP	Missense_Mutation	19	52149665	C	T	31	67
BRCA	TCGA-A8-A09I	LILRA1	SNP	Missense_Mutation	19	55106642	G	T	48	54
BRCA	TCGA-A8-A09I	ZNF549	SNP	Missense_Mutation	19	58049495	G	A	45	46
BRCA	TCGA-A8-A09I	SLC9A2	SNP	Silent	2	103310911	C	G	29	37
BRCA	TCGA-A8-A09I	WDR33	DEL	Frame_Shift_Del	2	128464048	C	-	30	81
BRCA	TCGA-A8-A09I	KCNH7	SNP	Silent	2	163694986	G	A	33	49
BRCA	TCGA-A8-A09I	XIRP2	SNP	Silent	2	168074744	C	T	19	43
BRCA	TCGA-A8-A09I	AOX1	SNP	Missense_Mutation	2	201499591	C	G	29	62
BRCA	TCGA-A8-A09I	LOC100288694	SNP	Missense_Mutation	2	25468981	C	T	31	62
BRCA	TCGA-A8-A09I	ACTR2	SNP	Silent	2	65480995	C	T	29	59
BRCA	TCGA-A8-A09I	IAH1	SNP	Missense_Mutation	2	9628448	G	C	41	73
BRCA	TCGA-A8-A09I	KANSL3	SNP	Missense_Mutation	2	97278599	G	A	40	70
BRCA	TCGA-A8-A09I	MACROD2	SNP	Missense_Mutation	20	15918186	G	A	45	56
BRCA	TCGA-A8-A09I	SPINT3	SNP	Missense_Mutation	20	44141392	C	G	29	49
BRCA	TCGA-A8-A09I	BACE2	SNP	Missense_Mutation	21	42609558	C	G	32	53
BRCA	TCGA-A8-A09I	PI4KA	SNP	Missense_Mutation	22	21119129	G	T	33	100
BRCA	TCGA-A8-A09I	GPRASP2	SNP	Missense_Mutation	23	101969921	A	T	10	41
BRCA	TCGA-A8-A09I	PRPS2	SNP	Silent	23	12817443	G	A	40	25
BRCA	TCGA-A8-A09I	BCORL1	SNP	Missense_Mutation	23	129147771	G	A	46	59
BRCA	TCGA-A8-A09I	MAGEA12	SNP	Nonsense_Mutation	23	151900209	T	A	63	55
BRCA	TCGA-A8-A09I	SCML1	SNP	Nonsense_Mutation	23	17768275	G	T	45	7
BRCA	TCGA-A8-A09I	GPR64	SNP	Silent	23	19021145	C	T	19	37
BRCA	TCGA-A8-A09I	HUWE1	SNP	Missense_Mutation	23	53560335	C	G	29	93
BRCA	TCGA-A8-A09I	HUWE1	SNP	Missense_Mutation	23	53562391	C	G	32	50
BRCA	TCGA-A8-A09I	HDAC8	SNP	Missense_Mutation	23	71681927	G	A	40	76
BRCA	TCGA-A8-A09I	IGSF11	SNP	Missense_Mutation	3	118624539	G	A	39	63
BRCA	TCGA-A8-A09I	ECE2	SNP	Missense_Mutation	3	184009866	G	A	38	94
BRCA	TCGA-A8-A09I	DCLK3	SNP	Missense_Mutation	3	36779994	G	A	39	54
BRCA	TCGA-A8-A09I	BHLHE40	DEL	In_Frame_Del	3	5023162	AGCAGAAAA	-	7	79
BRCA	TCGA-A8-A09I	GUF1	SNP	Missense_Mutation	4	44697709	C	A	25	96
BRCA	TCGA-A8-A09I	LNX1	SNP	Missense_Mutation	4	54362417	G	A	44	58
BRCA	TCGA-A8-A09I	PTPN13	SNP	Missense_Mutation	4	87643534	G	A	41	84
BRCA	TCGA-A8-A09I	GRID2	SNP	Missense_Mutation	4	94376970	C	T	32	100
BRCA	TCGA-A8-A09I	FNIP1	SNP	Missense_Mutation	5	130797633	G	A	37	64
BRCA	TCGA-A8-A09I	PCDHB5	SNP	Silent	5	140517347	C	T	27	49
BRCA	TCGA-A8-A09I	PCDHB10	SNP	Silent	5	140573346	C	T	27	35
BRCA	TCGA-A8-A09I	SPINK14	SNP	Missense_Mutation	5	147553826	G	C	45	55
BRCA	TCGA-A8-A09I	ATP10B	SNP	Missense_Mutation	5	160115005	T	G	62	80
BRCA	TCGA-A8-A09I	MTMR12	SNP	Silent	5	32263227	G	A	33	65
BRCA	TCGA-A8-A09I	RXFP3	SNP	Missense_Mutation	5	33937086	C	T	27	62
BRCA	TCGA-A8-A09I	HIST1H3B	SNP	Missense_Mutation	6	26032069	C	T	32	98
BRCA	TCGA-A8-A09I	ZNF323	SNP	Silent	6	28297245	G	A	41	23
BRCA	TCGA-A8-A09I	FRS3	SNP	Missense_Mutation	6	41739230	G	T	44	47
BRCA	TCGA-A8-A09I	PHF3	SNP	Missense_Mutation	6	64422949	A	G	4	55
BRCA	TCGA-A8-A09I	SNAP91	SNP	Missense_Mutation	6	84371241	A	T	4	62
BRCA	TCGA-A8-A09I	CPA5	SNP	Silent	7	129989884	G	A	45	66
BRCA	TCGA-A8-A09I	KLHL7	SNP	Missense_Mutation	7	23213889	G	A	41	96
BRCA	TCGA-A8-A09I	GUSB	SNP	Missense_Mutation	7	65439594	T	C	49	88
BRCA	TCGA-A8-A09I	NCF1	SNP	Missense_Mutation	7	74193727	C	G	29	61
BRCA	TCGA-A8-A09I	ABCB4	SNP	Silent	7	87060834	C	T	23	46
BRCA	TCGA-A8-A09I	UBR5	SNP	Silent	8	103287948	T	A	55	57
BRCA	TCGA-A8-A09I	ZFPM2	SNP	Missense_Mutation	8	106813942	G	A	46	87
BRCA	TCGA-A8-A09I	KCNV1	SNP	Missense_Mutation	8	110986391	C	A	27	77
BRCA	TCGA-A8-A09I	ASAP1	SNP	Missense_Mutation	8	131191529	A	C	14	91
BRCA	TCGA-A8-A09I	BRF2	SNP	Missense_Mutation	8	37702391	C	A	17	94
BRCA	TCGA-A8-A09I	FAM110B	SNP	Silent	8	59059800	C	T	27	42
BRCA	TCGA-A8-A09I	PSKH2	SNP	Missense_Mutation	8	87060836	C	T	31	51
BRCA	TCGA-A8-A09I	GABBR2	SNP	Missense_Mutation	9	101052888	C	G	31	83
BRCA	TCGA-A8-A09I	RNF20	SNP	Missense_Mutation	9	104313065	G	A	45	98
BRCA	TCGA-A8-A09I	SLC25A25	SNP	Missense_Mutation	9	130868675	C	T	29	76
BRCA	TCGA-A8-A09I	NUP214	SNP	Missense_Mutation	9	134014692	G	C	41	94
BRCA	TCGA-A8-A09I	HAUS6	SNP	Missense_Mutation	9	19082942	A	C	1	64
BRCA	TCGA-A8-A09I	FOCAD	SNP	Missense_Mutation	9	20770124	C	T	28	69
BRCA	TCGA-A8-A09I	LINGO2	SNP	Missense_Mutation	9	27950444	C	T	32	100
BRCA	TCGA-A8-A09I	ANKRD18B	SNP	Silent	9	33533508	C	T	18	48
BRCA	TCGA-A8-A09I	CCIN	SNP	Missense_Mutation	9	36170527	A	G	3	74
BRCA	TCGA-A8-A09I	PTPRD	SNP	Missense_Mutation	9	8524958	G	C	37	100
BRCA	TCGA-A8-A09K	CASZ1	SNP	Missense_Mutation	1	10719985	G	A	38	80
BRCA	TCGA-A8-A09K	SLC22A15	SNP	Nonsense_Mutation	1	116609327	C	T	17	83
BRCA	TCGA-A8-A09K	THBS3	SNP	Missense_Mutation	1	155169883	T	A	52	87
BRCA	TCGA-A8-A09K	NVL	SNP	Splice_site	1	224415372	C	T	30	74
BRCA	TCGA-A8-A09K	RGS7	SNP	Splice_Site	1	241094016	C	T	18	97
BRCA	TCGA-A8-A09K	ASB13	SNP	Missense_Mutation	10	5682712	T	G	56	67
BRCA	TCGA-A8-A09K	IFITM5	SNP	Missense_Mutation	11	298552	C	G	24	66
BRCA	TCGA-A8-A09K	MYEOV	INS	Frame_Shift_Ins	11	69063518	-	A	48	42
BRCA	TCGA-A8-A09K	KCTD14	SNP	Missense_Mutation	11	77734259	T	C	55	43
BRCA	TCGA-A8-A09K	C12orf65	SNP	Silent	12	123738230	C	T	23	53
BRCA	TCGA-A8-A09K	KRT6C	SNP	Missense_Mutation	12	52863207	G	T	48	62
BRCA	TCGA-A8-A09K	DYNC1H1	SNP	Missense_Mutation	14	102467927	G	C	46	100
BRCA	TCGA-A8-A09K	GPR137C	SNP	Silent	14	53098946	T	C	60	59
BRCA	TCGA-A8-A09K	UBFD1	SNP	Missense_Mutation	16	23573549	A	G	1	91
BRCA	TCGA-A8-A09K	ZNF48	SNP	Missense_Mutation	16	30409119	C	T	30	58
BRCA	TCGA-A8-A09K	TIAF1	SNP	Missense_Mutation	17	27401124	C	T	29	53
BRCA	TCGA-A8-A09K	PLEKHH3	SNP	Splice_Site	17	40826429	T	C	55	58
BRCA	TCGA-A8-A09K	TMUB2	SNP	Missense_Mutation	17	42266856	C	T	22	52
BRCA	TCGA-A8-A09K	NEURL4	SNP	Splice_site	17	7226882	C	G	30	96
BRCA	TCGA-A8-A09K	NEDD4L	SNP	Missense_Mutation	18	56033400	T	A	62	93
BRCA	TCGA-A8-A09K	ANKRD12	DEL	Frame_Shift_Del	18	9256071	AAAC	-	13	92
BRCA	TCGA-A8-A09K	PKN1	SNP	Silent	19	14569083	C	A	27	74
BRCA	TCGA-A8-A09K	TMEM143	SNP	Missense_Mutation	19	48845963	G	A	42	80
BRCA	TCGA-A8-A09K	BIRC8	SNP	Missense_Mutation	19	53793429	T	C	63	50
BRCA	TCGA-A8-A09K	ZNF419	SNP	Missense_Mutation	19	58005412	C	T	30	53
BRCA	TCGA-A8-A09K	AFF3	DEL	In_Frame_Del	2	100194818	GCA	-	46	69
BRCA	TCGA-A8-A09K	AFF3	DEL	Frame_Shift_Del	2	100194823	CC	-	30	82
BRCA	TCGA-A8-A09K	ITGAV	DEL	Frame_Shift_Del	2	187540366	CCAAGTTGGGAGATTA	-	26	69
BRCA	TCGA-A8-A09K	SEPT2	SNP	Missense_Mutation	2	242276852	G	A	37	86
BRCA	TCGA-A8-A09K	SLC13A3	SNP	Missense_Mutation	20	45188713	T	C	52	69
BRCA	TCGA-A8-A09K	PMEPA1	SNP	Missense_Mutation	20	56228121	C	G	30	88
BRCA	TCGA-A8-A09K	PDE9A	DEL	Frame_Shift_Del	21	44119099	T	-	55	15
BRCA	TCGA-A8-A09K	NXT2	SNP	Missense_Mutation	23	108785738	C	G	25	83
BRCA	TCGA-A8-A09K	SPANXN3	SNP	Silent	23	142596806	G	A	38	54
BRCA	TCGA-A8-A09K	CAPN7	SNP	Splice_site	3	15270481	A	G	10	90
BRCA	TCGA-A8-A09K	TIGD4	SNP	Silent	4	153690942	C	G	21	43
BRCA	TCGA-A8-A09K	DCHS2	SNP	Silent	4	155242003	C	T	29	53
BRCA	TCGA-A8-A09K	TEC	SNP	Missense_Mutation	4	48147561	T	A	49	78
BRCA	TCGA-A8-A09K	C5orf56	SNP	Missense_Mutation	5	131821895	C	G	17	50
BRCA	TCGA-A8-A09K	TRPC7	SNP	Missense_Mutation	5	135561905	T	G	60	59
BRCA	TCGA-A8-A09K	SRA1	INS	Frame_Shift_Ins	5	139931628	-	GT	6	63
BRCA	TCGA-A8-A09K	PCDHB12	SNP	Missense_Mutation	5	140590170	C	T	23	79
BRCA	TCGA-A8-A09K	CSF1R	SNP	Silent	5	149449828	G	A	40	36
BRCA	TCGA-A8-A09K	FLNC	SNP	Silent	7	128475402	G	A	41	54
BRCA	TCGA-A8-A09K	CSMD1	SNP	Missense_Mutation	8	2820779	C	T	27	41
BRCA	TCGA-A8-A09K	MSC	SNP	Missense_Mutation	8	72756066	C	G	28	63
BRCA	TCGA-A8-A09K	PALM2-AKAP2	SNP	Missense_Mutation	9	112694275	T	A	50	55
BRCA	TCGA-A8-A09K	FUBP3	SNP	Missense_Mutation	9	133493263	G	T	41	100
BRCA	TCGA-A8-A09K	FUBP3	SNP	Nonsense_Mutation	9	133498185	C	T	29	98
BRCA	TCGA-A8-A09M	TTF2	SNP	Silent	1	117617614	T	A	54	47
BRCA	TCGA-A8-A09M	TXNIP	SNP	Silent	1	145438841	C	A	32	70
BRCA	TCGA-A8-A09M	KIAA0907	SNP	Missense_Mutation	1	155893455	G	C	34	95
BRCA	TCGA-A8-A09M	ATP1A2	SNP	Silent	1	160105040	G	A	40	39
BRCA	TCGA-A8-A09M	ASTN1	SNP	Missense_Mutation	1	176833496	C	A	23	63
BRCA	TCGA-A8-A09M	CACNA1E	SNP	Missense_Mutation	1	181480573	G	T	43	100
BRCA	TCGA-A8-A09M	PIK3C2B	SNP	Missense_Mutation	1	204393999	C	T	31	71
BRCA	TCGA-A8-A09M	NFASC	SNP	Missense_Mutation	1	204921156	A	C	8	91
BRCA	TCGA-A8-A09M	CTSE	SNP	Missense_Mutation	1	206325403	G	C	44	66
BRCA	TCGA-A8-A09M	TRAF3IP3	SNP	Missense_Mutation	1	209954787	A	C	7	53
BRCA	TCGA-A8-A09M	RYR2	SNP	Silent	1	237890431	A	G	14	48
BRCA	TCGA-A8-A09M	TRIM63	SNP	Missense_Mutation	1	26386771	G	C	39	64
BRCA	TCGA-A8-A09M	GRIK3	SNP	Missense_Mutation	1	37270667	G	C	42	93
BRCA	TCGA-A8-A09M	LRRC42	SNP	Missense_Mutation	1	54423919	C	G	20	69
BRCA	TCGA-A8-A09M	WLS	SNP	Silent	1	68564426	G	A	41	48
BRCA	TCGA-A8-A09M	C1orf173	SNP	Missense_Mutation	1	75037981	G	A	33	45
BRCA	TCGA-A8-A09M	TACC2	SNP	Silent	10	123985898	G	A	37	52
BRCA	TCGA-A8-A09M	C10orf68	SNP	Nonsense_Mutation	10	33165292	C	T	23	43
BRCA	TCGA-A8-A09M	CUL2	SNP	Missense_Mutation	10	35318465	T	C	63	94
BRCA	TCGA-A8-A09M	VCL	SNP	Silent	10	75860849	A	C	6	40
BRCA	TCGA-A8-A09M	DYNC2H1	SNP	Missense_Mutation	11	103027330	G	A	35	70
BRCA	TCGA-A8-A09M	ARHGAP32	SNP	Nonsense_Mutation	11	128841030	C	A	32	83
BRCA	TCGA-A8-A09M	PAX6	SNP	Silent	11	31816281	G	A	40	39
BRCA	TCGA-A8-A09M	MAPK8IP1	DEL	Frame_Shift_Del	11	45923586	CTCGATCATC	-	32	91
BRCA	TCGA-A8-A09M	OR4C45	SNP	Missense_Mutation	11	48367409	C	A	30	48
BRCA	TCGA-A8-A09M	TNKS1BP1	SNP	Missense_Mutation	11	57075876	C	T	23	74
BRCA	TCGA-A8-A09M	OR56A4	SNP	Missense_Mutation	11	6023784	C	A	26	52
BRCA	TCGA-A8-A09M	HEPHL1	SNP	Missense_Mutation	11	93844724	C	A	18	67
BRCA	TCGA-A8-A09M	RFX4	SNP	Missense_Mutation	12	107048038	T	C	58	90
BRCA	TCGA-A8-A09M	RFX4	SNP	Missense_Mutation	12	107048046	C	A	22	99
BRCA	TCGA-A8-A09M	TAS2R13	SNP	Missense_Mutation	12	11061556	G	C	33	46
BRCA	TCGA-A8-A09M	CCDC63	SNP	Missense_Mutation	12	111291294	G	A	39	58
BRCA	TCGA-A8-A09M	FLT3	SNP	Missense_Mutation	13	28622415	T	C	57	54
BRCA	TCGA-A8-A09M	EFS	SNP	Missense_Mutation	14	23828908	G	T	47	72
BRCA	TCGA-A8-A09M	FSCB	SNP	Silent	14	44975063	A	G	3	50
BRCA	TCGA-A8-A09M	MAP3K9	SNP	Missense_Mutation	14	71197537	G	C	43	98
BRCA	TCGA-A8-A09M	VSX2	SNP	Silent	14	74726397	C	T	21	59
BRCA	TCGA-A8-A09M	OTUD7A	SNP	Missense_Mutation	15	31851321	G	A	46	100
BRCA	TCGA-A8-A09M	MYH11	SNP	Missense_Mutation	16	15829383	G	T	34	58
BRCA	TCGA-A8-A09M	GP2	SNP	Silent	16	20335274	G	C	47	55
BRCA	TCGA-A8-A09M	KIAA0556	SNP	Missense_Mutation	16	27752151	C	T	22	50
BRCA	TCGA-A8-A09M	ABCC12	SNP	Missense_Mutation	16	48117854	T	A	60	69
BRCA	TCGA-A8-A09M	EFCAB13	SNP	Missense_Mutation	17	45452315	C	G	20	54
BRCA	TCGA-A8-A09M	INTS2	SNP	Silent	17	59967189	G	A	36	78
BRCA	TCGA-A8-A09M	CACNG1	SNP	Missense_Mutation	17	65052324	C	A	32	81
BRCA	TCGA-A8-A09M	EPG5	SNP	Missense_Mutation	18	43460065	G	C	33	65
BRCA	TCGA-A8-A09M	ANKRD12	DEL	Frame_Shift_Del	18	9258366	CAGT	-	25	65
BRCA	TCGA-A8-A09M	ABCA7	SNP	Missense_Mutation	19	1062286	G	T	39	78
BRCA	TCGA-A8-A09M	CD97	SNP	Missense_Mutation	19	14513412	C	G	22	41
BRCA	TCGA-A8-A09M	APLP1	SNP	Silent	19	36369538	G	T	47	60
BRCA	TCGA-A8-A09M	TEX101	SNP	Missense_Mutation	19	43920534	C	G	17	55
BRCA	TCGA-A8-A09M	TRPM4	SNP	Splice_Site	19	49703867	G	A	33	96
BRCA	TCGA-A8-A09M	CEACAM18	DEL	Frame_Shift_Del	19	51984913	GTGGCCTGTGA	-	48	56
BRCA	TCGA-A8-A09M	RGPD3	SNP	Silent	2	107041153	G	A	40	56
BRCA	TCGA-A8-A09M	THSD7B	SNP	Nonsense_Mutation	2	138000078	C	A	25	61
BRCA	TCGA-A8-A09M	LY75-CD302	SNP	Silent	2	160750486	T	A	51	61
BRCA	TCGA-A8-A09M	SESTD1	SNP	Missense_Mutation	2	179986599	T	C	52	65
BRCA	TCGA-A8-A09M	TRIP12	SNP	Missense_Mutation	2	230656625	G	A	41	100
BRCA	TCGA-A8-A09M	EPT1	SNP	Missense_Mutation	2	26607960	C	G	30	95
BRCA	TCGA-A8-A09M	CCDC104	SNP	Missense_Mutation	2	55746978	A	G	11	84
BRCA	TCGA-A8-A09M	SMEK2	DEL	Frame_Shift_Del	2	55808732	C	-	29	100
BRCA	TCGA-A8-A09M	DYSF	SNP	Missense_Mutation	2	71839859	A	T	7	88
BRCA	TCGA-A8-A09M	RALGAPA2	SNP	Silent	20	20493753	C	T	17	65
BRCA	TCGA-A8-A09M	MANBAL	SNP	Missense_Mutation	20	35929733	C	T	19	90
BRCA	TCGA-A8-A09M	PARD6B	SNP	Missense_Mutation	20	49366477	G	C	35	86
BRCA	TCGA-A8-A09M	MC3R	SNP	Missense_Mutation	20	54824566	G	A	34	98
BRCA	TCGA-A8-A09M	BRWD1	SNP	Missense_Mutation	21	40569039	C	G	29	71
BRCA	TCGA-A8-A09M	C22orf43	SNP	Missense_Mutation	22	23964316	C	A	32	53
BRCA	TCGA-A8-A09M	RFPL1	SNP	Missense_Mutation	22	29834893	G	A	34	51
BRCA	TCGA-A8-A09M	MGAT3	SNP	Missense_Mutation	22	39883618	C	A	27	73
BRCA	TCGA-A8-A09M	ACO2	SNP	Missense_Mutation	22	41865164	G	T	34	63
BRCA	TCGA-A8-A09M	ATP1B4	SNP	Missense_Mutation	23	119509272	C	A	23	63
BRCA	TCGA-A8-A09M	HUWE1	SNP	Silent	23	53565354	C	A	26	57
BRCA	TCGA-A8-A09M	PJA1	SNP	Silent	23	68383061	C	T	28	64
BRCA	TCGA-A8-A09M	SLC35A5	SNP	Missense_Mutation	3	112300106	C	T	23	57
BRCA	TCGA-A8-A09M	EPHB1	SNP	Silent	3	134670326	G	C	42	50
BRCA	TCGA-A8-A09M	ANKRD28	SNP	Missense_Mutation	3	15765918	C	G	20	88
BRCA	TCGA-A8-A09M	TMEM41A	SNP	Missense_Mutation	3	185209458	G	C	36	89
BRCA	TCGA-A8-A09M	NKTR	SNP	Missense_Mutation	3	42679861	T	A	58	80
BRCA	TCGA-A8-A09M	SETMAR	SNP	Missense_Mutation	3	4357984	G	A	38	53
BRCA	TCGA-A8-A09M	IL15	SNP	Missense_Mutation	4	142651125	G	T	48	48
BRCA	TCGA-A8-A09M	FBXW7	SNP	Missense_Mutation	4	153253831	A	G	7	94
BRCA	TCGA-A8-A09M	FNIP2	SNP	Missense_Mutation	4	159756601	G	C	33	100
BRCA	TCGA-A8-A09M	WWC2	SNP	Missense_Mutation	4	184204028	G	A	33	55
BRCA	TCGA-A8-A09M	RBM47	DEL	Frame_Shift_Del	4	40440303	CT	-	28	84
BRCA	TCGA-A8-A09M	C4orf22	SNP	Missense_Mutation	4	81884720	A	G	14	73
BRCA	TCGA-A8-A09M	PCDHA8	SNP	Missense_Mutation	5	140223040	G	C	44	57
BRCA	TCGA-A8-A09M	PCDHGA8	SNP	Silent	5	140774003	C	A	22	43
BRCA	TCGA-A8-A09M	PCDH12	SNP	Missense_Mutation	5	141335925	G	A	39	60
BRCA	TCGA-A8-A09M	ODZ2	SNP	Missense_Mutation	5	167489099	T	G	59	46
BRCA	TCGA-A8-A09M	PANK3	SNP	Silent	5	167984618	A	G	5	53
BRCA	TCGA-A8-A09M	RMND5B	SNP	Missense_Mutation	5	177573261	G	A	41	97
BRCA	TCGA-A8-A09M	RUFY1	SNP	Missense_Mutation	5	179023616	T	G	55	63
BRCA	TCGA-A8-A09M	NPR3	DEL	In_Frame_Del	5	32780845	TCC	-	58	93
BRCA	TCGA-A8-A09M	MAP3K1	INS	Frame_Shift_Ins	5	56152573	-	T	24	94
BRCA	TCGA-A8-A09M	EPB41L2	SNP	Missense_Mutation	6	131184807	T	G	59	70
BRCA	TCGA-A8-A09M	TIAM2	SNP	Missense_Mutation	6	155569172	C	T	23	82
BRCA	TCGA-A8-A09M	NOX3	SNP	Missense_Mutation	6	155775952	G	T	48	87
BRCA	TCGA-A8-A09M	SLC17A2	SNP	Silent	6	25921430	G	T	37	69
BRCA	TCGA-A8-A09M	SLC17A2	SNP	Silent	6	25921485	G	A	45	66
BRCA	TCGA-A8-A09M	ZNF193	SNP	Missense_Mutation	6	28195034	C	A	28	50
BRCA	TCGA-A8-A09M	PEX6	SNP	Missense_Mutation	6	42932585	G	C	33	87
BRCA	TCGA-A8-A09M	TRAM2	SNP	Silent	6	52370468	G	A	34	55
BRCA	TCGA-A8-A09M	KIAA1009	SNP	Missense_Mutation	6	84834930	T	A	58	54
BRCA	TCGA-A8-A09M	MUC17	SNP	Missense_Mutation	7	100681618	C	A	17	47
BRCA	TCGA-A8-A09M	LAMB4	DEL	In_Frame_Del	7	107674765	AGATTTAAT	-	3	60
BRCA	TCGA-A8-A09M	SLC13A1	SNP	Missense_Mutation	7	122759261	T	A	49	56
BRCA	TCGA-A8-A09M	BMPER	SNP	Missense_Mutation	7	34091485	T	C	59	86
BRCA	TCGA-A8-A09M	ABCA13	SNP	Missense_Mutation	7	48308653	G	T	45	53
BRCA	TCGA-A8-A09M	ABCA13	SNP	Silent	7	48311643	T	C	56	50
BRCA	TCGA-A8-A09M	EFR3A	SNP	Missense_Mutation	8	132980672	C	A	30	95
BRCA	TCGA-A8-A09M	ZNF7	SNP	Missense_Mutation	8	146067735	T	G	59	73
BRCA	TCGA-A8-A09M	WHSC1L1	SNP	Missense_Mutation	8	38172281	C	G	28	67
BRCA	TCGA-A8-A09M	EHMT1	SNP	Missense_Mutation	9	140637847	C	T	28	89
BRCA	TCGA-A8-A09M	CCDC171	SNP	Missense_Mutation	9	15623373	A	C	15	75
BRCA	TCGA-A8-A09N	SH2D2A	SNP	Silent	1	156784032	G	A	45	57
BRCA	TCGA-A8-A09N	SH2D2A	SNP	Missense_Mutation	1	156784112	G	A	37	60
BRCA	TCGA-A8-A09N	SPTA1	SNP	Missense_Mutation	1	158641868	C	A	20	68
BRCA	TCGA-A8-A09N	SELP	SNP	Missense_Mutation	1	169581514	G	A	39	64
BRCA	TCGA-A8-A09N	KLHL12	SNP	Missense_Mutation	1	202862414	G	C	34	57
BRCA	TCGA-A8-A09N	EPHA8	SNP	Missense_Mutation	1	22903295	G	A	38	79
BRCA	TCGA-A8-A09N	AUNIP	SNP	Missense_Mutation	1	26162139	G	A	33	57
BRCA	TCGA-A8-A09N	CNKSR1	SNP	Silent	1	26509860	G	A	33	53
BRCA	TCGA-A8-A09N	KIF2C	SNP	Missense_Mutation	1	45227643	G	C	33	100
BRCA	TCGA-A8-A09N	PRDX1	INS	Frame_Shift_Ins	1	45980571	-	A	61	59
BRCA	TCGA-A8-A09N	KIAA0494	SNP	Missense_Mutation	1	47183644	G	A	45	97
BRCA	TCGA-A8-A09N	PODN	SNP	Missense_Mutation	1	53544159	C	T	27	61
BRCA	TCGA-A8-A09N	ECHS1	SNP	Silent	10	135179586	C	T	32	50
BRCA	TCGA-A8-A09N	KIAA1377	SNP	Silent	11	101828905	A	C	15	66
BRCA	TCGA-A8-A09N	MMP3	SNP	Missense_Mutation	11	102708128	C	G	29	93
BRCA	TCGA-A8-A09N	GRAMD1B	SNP	Silent	11	123481044	C	G	29	65
BRCA	TCGA-A8-A09N	PRKRIR	DEL	In_Frame_Del	11	76063702	TTC	-	52	46
BRCA	TCGA-A8-A09N	TRIM53L	SNP	Silent	11	89578127	G	A	45	38
BRCA	TCGA-A8-A09N	CEP57	SNP	Missense_Mutation	11	95552061	C	G	25	89
BRCA	TCGA-A8-A09N	MYBPC1	SNP	Missense_Mutation	12	102025811	G	C	45	100
BRCA	TCGA-A8-A09N	HPD	SNP	Silent	12	122284816	G	A	38	17
BRCA	TCGA-A8-A09N	ALG10B	SNP	Missense_Mutation	12	38714107	C	T	29	89
BRCA	TCGA-A8-A09N	R3HDM2	SNP	Silent	12	57660598	G	A	33	60
BRCA	TCGA-A8-A09N	RBM26	SNP	Missense_Mutation	13	79932554	C	G	32	72
BRCA	TCGA-A8-A09N	AHNAK2	SNP	Silent	14	105413154	G	A	40	41
BRCA	TCGA-A8-A09N	IGHG3	SNP	Silent	14	106237611	C	T	27	27
BRCA	TCGA-A8-A09N	TSHR	SNP	Missense_Mutation	14	81609330	C	A	27	75
BRCA	TCGA-A8-A09N	LRRK1	SNP	Silent	15	101549212	C	T	17	66
BRCA	TCGA-A8-A09N	LOC100130736	SNP	Missense_Mutation	15	29906211	G	C	33	77
BRCA	TCGA-A8-A09N	NTRK3	SNP	Splice_Site	15	88671941	C	A	17	80
BRCA	TCGA-A8-A09N	TP53	SNP	Missense_Mutation	17	7578271	T	C	51	76
BRCA	TCGA-A8-A09N	WRAP53	SNP	Silent	17	7606072	C	A	30	47
BRCA	TCGA-A8-A09N	DNAH17	SNP	Missense_Mutation	17	76472688	C	G	32	58
BRCA	TCGA-A8-A09N	PDE4C	SNP	Missense_Mutation	19	18321933	C	T	31	49
BRCA	TCGA-A8-A09N	ZNRF4	SNP	Silent	19	5455667	G	A	38	46
BRCA	TCGA-A8-A09N	MUC16	SNP	Missense_Mutation	19	9062767	C	G	32	52
BRCA	TCGA-A8-A09N	GTDC1	SNP	Silent	2	144764838	A	G	16	51
BRCA	TCGA-A8-A09N	PKP4	SNP	Missense_Mutation	2	159481540	G	A	37	97
BRCA	TCGA-A8-A09N	DLGAP4	SNP	Missense_Mutation	20	35155390	G	A	33	100
BRCA	TCGA-A8-A09N	DOK5	SNP	Missense_Mutation	20	53260054	C	T	31	83
BRCA	TCGA-A8-A09N	ARMCX5	SNP	Silent	23	101858440	G	A	40	46
BRCA	TCGA-A8-A09N	RHOXF2	SNP	Missense_Mutation	23	119292962	G	C	33	47
BRCA	TCGA-A8-A09N	GAB3	SNP	Splice_site	23	153925488	G	A	46	59
BRCA	TCGA-A8-A09N	PGK1	SNP	Missense_Mutation	23	77373596	G	A	45	94
BRCA	TCGA-A8-A09N	PCDH11X	SNP	Missense_Mutation	23	91090834	G	C	41	90
BRCA	TCGA-A8-A09N	BOC	SNP	Missense_Mutation	3	113004392	G	T	47	71
BRCA	TCGA-A8-A09N	ATP13A4	SNP	Splice_site	3	193185105	C	T	21	98
BRCA	TCGA-A8-A09N	SENP5	SNP	Missense_Mutation	3	196613257	A	C	7	46
BRCA	TCGA-A8-A09N	KIAA0226	SNP	Missense_Mutation	3	197421375	C	G	32	75
BRCA	TCGA-A8-A09N	ARPP21	SNP	Missense_Mutation	3	35729359	C	G	29	57
BRCA	TCGA-A8-A09N	SETMAR	SNP	Missense_Mutation	3	4355372	G	C	41	50
BRCA	TCGA-A8-A09N	UBA3	SNP	Missense_Mutation	3	69113243	C	G	32	77
BRCA	TCGA-A8-A09N	CENPE	SNP	Missense_Mutation	4	104080339	G	A	37	50
BRCA	TCGA-A8-A09N	LRP2BP	SNP	Silent	4	186291899	G	A	45	59
BRCA	TCGA-A8-A09N	TRIML1	SNP	Silent	4	189068190	C	T	32	49
BRCA	TCGA-A8-A09N	MOB1B	SNP	Silent	4	71844867	C	T	29	64
BRCA	TCGA-A8-A09N	PCDHGB4	SNP	Missense_Mutation	5	140769441	G	A	37	82
BRCA	TCGA-A8-A09N	CREBRF	SNP	Silent	5	172537652	C	T	29	63
BRCA	TCGA-A8-A09N	CDH9	SNP	Splice_site	5	26902585	T	C	56	68
BRCA	TCGA-A8-A09N	CDH6	SNP	Missense_Mutation	5	31305333	A	G	4	90
BRCA	TCGA-A8-A09N	PRKAA1	SNP	Silent	5	40775557	A	G	8	72
BRCA	TCGA-A8-A09N	KIF2A	SNP	Missense_Mutation	5	61643923	G	A	45	97
BRCA	TCGA-A8-A09N	CDK7	SNP	Missense_Mutation	5	68551332	G	A	45	99
BRCA	TCGA-A8-A09N	ENSG00000227087	SNP	Missense_Mutation	5	79627880	C	G	32	69
BRCA	TCGA-A8-A09N	PRDM1	SNP	Missense_Mutation	6	106553664	C	A	27	40
BRCA	TCGA-A8-A09N	LGSN	SNP	Silent	6	63990178	G	A	39	31
BRCA	TCGA-A8-A09N	CUX1	SNP	Silent	7	101844815	G	A	48	41
BRCA	TCGA-A8-A09N	MGAM	SNP	Silent	7	141763364	G	A	45	54
BRCA	TCGA-A8-A09N	WDR60	SNP	Silent	7	158672659	G	A	34	51
BRCA	TCGA-A8-A09N	NPC1L1	SNP	Silent	7	44579387	G	C	45	58
BRCA	TCGA-A8-A09N	ANGPT1	SNP	Missense_Mutation	8	108359214	G	C	45	100
BRCA	TCGA-A8-A09N	KCNB2	SNP	Missense_Mutation	8	73848476	G	A	40	100
BRCA	TCGA-A8-A09N	ZFHX4	SNP	Silent	8	77745629	G	A	45	63
BRCA	TCGA-A8-A09N	DCAF4L2	SNP	Missense_Mutation	8	88885242	C	T	19	46
BRCA	TCGA-A8-A09N	PTBP3	SNP	Missense_Mutation	9	115030409	G	C	41	84
BRCA	TCGA-A8-A09N	NUP188	SNP	Missense_Mutation	9	131721088	A	C	12	75
BRCA	TCGA-A8-A09N	SETX	SNP	Missense_Mutation	9	135156918	T	C	51	78
BRCA	TCGA-A8-A09Q	OVGP1	SNP	Missense_Mutation	1	111957196	C	A	17	49
BRCA	TCGA-A8-A09Q	RSBN1	SNP	Silent	1	114308631	G	A	33	87
BRCA	TCGA-A8-A09Q	ANKRD35	SNP	Missense_Mutation	1	145558839	G	T	41	76
BRCA	TCGA-A8-A09Q	PIP5K1A	SNP	Silent	1	151215029	A	G	1	49
BRCA	TCGA-A8-A09Q	POGZ	SNP	Nonsense_Mutation	1	151377393	G	T	45	67
BRCA	TCGA-A8-A09Q	LCE1A	SNP	Silent	1	152800092	C	T	23	43
BRCA	TCGA-A8-A09Q	INSRR	SNP	Missense_Mutation	1	156821130	C	G	26	74
BRCA	TCGA-A8-A09Q	IGSF9	SNP	Missense_Mutation	1	159904310	A	G	7	49
BRCA	TCGA-A8-A09Q	ADAMTS4	SNP	Silent	1	161168097	C	T	29	59
BRCA	TCGA-A8-A09Q	CFH	SNP	Missense_Mutation	1	196706080	A	T	9	42
BRCA	TCGA-A8-A09Q	DYRK3	SNP	Silent	1	206821149	A	G	11	53
BRCA	TCGA-A8-A09Q	HHAT	SNP	Missense_Mutation	1	210796928	C	T	30	88
BRCA	TCGA-A8-A09Q	PCNXL2	SNP	Missense_Mutation	1	233120153	T	C	54	60
BRCA	TCGA-A8-A09Q	OR11L1	SNP	Missense_Mutation	1	248005132	A	G	8	57
BRCA	TCGA-A8-A09Q	HECTD3	SNP	Missense_Mutation	1	45472650	A	C	4	89
BRCA	TCGA-A8-A09Q	SPATA6	SNP	Missense_Mutation	1	48764474	G	T	44	62
BRCA	TCGA-A8-A09Q	C1orf168	SNP	Silent	1	57258333	A	G	8	55
BRCA	TCGA-A8-A09Q	TAS1R1	SNP	Missense_Mutation	1	6634970	A	G	8	55
BRCA	TCGA-A8-A09Q	CTH	SNP	Nonsense_Mutation	1	70895527	C	G	17	56
BRCA	TCGA-A8-A09Q	C1orf173	SNP	Silent	1	75038229	A	G	4	42
BRCA	TCGA-A8-A09Q	MSH4	SNP	Nonsense_Mutation	1	76269499	C	T	19	55
BRCA	TCGA-A8-A09Q	ZZZ3	SNP	Missense_Mutation	1	78031328	T	A	50	89
BRCA	TCGA-A8-A09Q	ZNF644	SNP	Missense_Mutation	1	91406699	G	A	40	75
BRCA	TCGA-A8-A09Q	LOXL4	SNP	Silent	10	100017455	A	G	8	49
BRCA	TCGA-A8-A09Q	EBF3	SNP	Missense_Mutation	10	131671832	T	C	58	90
BRCA	TCGA-A8-A09Q	CTNNA3	SNP	Missense_Mutation	10	68139014	C	T	23	98
BRCA	TCGA-A8-A09Q	OPN4	SNP	Silent	10	88419766	C	T	31	53
BRCA	TCGA-A8-A09Q	MARCH5	SNP	Missense_Mutation	10	94109244	C	T	27	83
BRCA	TCGA-A8-A09Q	PDGFD	SNP	Missense_Mutation	11	103814288	C	T	32	86
BRCA	TCGA-A8-A09Q	OR8B12	SNP	Missense_Mutation	11	124413190	G	A	39	80
BRCA	TCGA-A8-A09Q	NELL1	SNP	Missense_Mutation	11	20699519	G	A	40	55
BRCA	TCGA-A8-A09Q	TRIM51	SNP	Missense_Mutation	11	55658869	G	A	33	30
BRCA	TCGA-A8-A09Q	NRXN2	SNP	Silent	11	64419616	G	A	39	34
BRCA	TCGA-A8-A09Q	DPP3	SNP	Missense_Mutation	11	66276589	C	A	28	82
BRCA	TCGA-A8-A09Q	FAT3	SNP	Missense_Mutation	11	92534068	G	C	41	89
BRCA	TCGA-A8-A09Q	CCDC67	SNP	Missense_Mutation	11	93104384	A	C	13	66
BRCA	TCGA-A8-A09Q	AMOTL1	SNP	Missense_Mutation	11	94599220	G	A	38	81
BRCA	TCGA-A8-A09Q	SBF2	SNP	Nonsense_Mutation	11	9875162	G	A	39	69
BRCA	TCGA-A8-A09Q	BHLHE41	SNP	Missense_Mutation	12	26276608	C	T	27	79
BRCA	TCGA-A8-A09Q	KCNA1	SNP	Missense_Mutation	12	5021107	C	T	19	97
BRCA	TCGA-A8-A09Q	KRT85	SNP	Silent	12	52760887	G	A	40	54
BRCA	TCGA-A8-A09Q	ITGBL1	SNP	Silent	13	102250606	C	A	29	66
BRCA	TCGA-A8-A09Q	FAM124A	SNP	Missense_Mutation	13	51826286	C	A	27	43
BRCA	TCGA-A8-A09Q	OR11H12	SNP	Silent	14	19377728	C	A	32	60
BRCA	TCGA-A8-A09Q	KTN1	SNP	Missense_Mutation	14	56114796	G	A	41	86
BRCA	TCGA-A8-A09Q	PELI2	SNP	Missense_Mutation	14	56763595	G	A	39	87
BRCA	TCGA-A8-A09Q	SMURF2	SNP	Missense_Mutation	17	62568001	C	G	24	100
BRCA	TCGA-A8-A09Q	SMURF2	SNP	Missense_Mutation	17	62568066	C	G	28	77
BRCA	TCGA-A8-A09Q	TTYH2	SNP	Missense_Mutation	17	72249264	C	A	22	90
BRCA	TCGA-A8-A09Q	TP53	SNP	Splice_Site	17	7578175	A	T	10	87
BRCA	TCGA-A8-A09Q	GAA	SNP	Missense_Mutation	17	78090815	G	C	43	95
BRCA	TCGA-A8-A09Q	MYH10	SNP	Missense_Mutation	17	8417136	G	A	40	82
BRCA	TCGA-A8-A09Q	CCDC102B	SNP	Missense_Mutation	18	66505946	C	A	17	50
BRCA	TCGA-A8-A09Q	ZNF799	SNP	Nonstop_Mutation	19	12491156	C	G	29	62
BRCA	TCGA-A8-A09Q	ZNF555	SNP	Missense_Mutation	19	2851535	A	C	3	53
BRCA	TCGA-A8-A09Q	MEGF8	SNP	Missense_Mutation	19	42847688	G	A	40	87
BRCA	TCGA-A8-A09Q	CD37	SNP	Missense_Mutation	19	49838991	C	A	32	63
BRCA	TCGA-A8-A09Q	SCN9A	SNP	Missense_Mutation	2	167136917	G	A	48	100
BRCA	TCGA-A8-A09Q	XIRP2	SNP	Missense_Mutation	2	168074694	A	G	4	52
BRCA	TCGA-A8-A09Q	TTN	SNP	Missense_Mutation	2	179481483	A	T	9	80
BRCA	TCGA-A8-A09Q	TTN	SNP	Missense_Mutation	2	179615171	G	A	40	59
BRCA	TCGA-A8-A09Q	APOB	SNP	Missense_Mutation	2	21225768	C	T	18	35
BRCA	TCGA-A8-A09Q	COL4A3	SNP	Missense_Mutation	2	228121089	T	A	60	58
BRCA	TCGA-A8-A09Q	UGT1A6	SNP	Missense_Mutation	2	234601870	A	G	6	69
BRCA	TCGA-A8-A09Q	TRPM8	SNP	Missense_Mutation	2	234835246	C	T	23	63
BRCA	TCGA-A8-A09Q	THADA	SNP	Nonsense_Mutation	2	43813847	T	A	61	42
BRCA	TCGA-A8-A09Q	MSH2	SNP	Missense_Mutation	2	47672761	C	G	29	88
BRCA	TCGA-A8-A09Q	STON1-GTF2A1L	SNP	Missense_Mutation	2	48807847	G	T	33	69
BRCA	TCGA-A8-A09Q	STAMBP	SNP	Missense_Mutation	2	74058086	C	T	31	55
BRCA	TCGA-A8-A09Q	ASXL1	SNP	Missense_Mutation	20	31022346	G	A	38	55
BRCA	TCGA-A8-A09Q	PTPRT	SNP	Missense_Mutation	20	40757458	C	T	23	81
BRCA	TCGA-A8-A09Q	PI3	SNP	Silent	20	43804746	T	C	56	50
BRCA	TCGA-A8-A09Q	ARHGAP6	SNP	Silent	23	11196301	G	A	38	48
BRCA	TCGA-A8-A09Q	IL13RA2	SNP	Missense_Mutation	23	114250277	C	G	30	61
BRCA	TCGA-A8-A09Q	TLR7	SNP	Missense_Mutation	23	12904335	G	A	45	50
BRCA	TCGA-A8-A09Q	AFF2	SNP	Missense_Mutation	23	148055076	C	T	19	66
BRCA	TCGA-A8-A09Q	WAS	SNP	Missense_Mutation	23	48542728	C	G	20	61
BRCA	TCGA-A8-A09Q	DACH2	SNP	Silent	23	85769372	G	A	38	47
BRCA	TCGA-A8-A09Q	CBLB	SNP	Missense_Mutation	3	105421144	C	T	32	90
BRCA	TCGA-A8-A09Q	EAF2	SNP	Missense_Mutation	3	121573546	C	G	18	95
BRCA	TCGA-A8-A09Q	MYLK	SNP	Silent	3	123456283	C	T	19	1
BRCA	TCGA-A8-A09Q	DNAJC13	SNP	Missense_Mutation	3	132218599	C	T	31	97
BRCA	TCGA-A8-A09Q	ZIC1	SNP	Silent	3	147131206	C	T	21	56
BRCA	TCGA-A8-A09Q	PIK3CA	SNP	Silent	3	178941946	A	G	13	47
BRCA	TCGA-A8-A09Q	HTR3E	SNP	Missense_Mutation	3	183823994	T	G	59	65
BRCA	TCGA-A8-A09Q	MAD2L1	SNP	Missense_Mutation	4	120983241	T	A	57	67
BRCA	TCGA-A8-A09Q	TBC1D9	SNP	Missense_Mutation	4	141543579	G	A	38	75
BRCA	TCGA-A8-A09Q	WDR17	SNP	Missense_Mutation	4	177071027	G	C	47	99
BRCA	TCGA-A8-A09Q	BEND4	SNP	Missense_Mutation	4	42145757	C	T	18	81
BRCA	TCGA-A8-A09Q	GABRB1	SNP	Missense_Mutation	4	47427898	C	T	23	76
BRCA	TCGA-A8-A09Q	SLC4A4	SNP	Missense_Mutation	4	72205191	G	T	47	100
BRCA	TCGA-A8-A09Q	TSSK1B	SNP	Missense_Mutation	5	112769486	T	C	49	47
BRCA	TCGA-A8-A09Q	TGFBI	SNP	Missense_Mutation	5	135391372	C	T	24	76
BRCA	TCGA-A8-A09Q	PDGFRB	SNP	Missense_Mutation	5	149513452	G	A	39	63
BRCA	TCGA-A8-A09Q	NUDCD2	SNP	Missense_Mutation	5	162881017	T	A	64	91
BRCA	TCGA-A8-A09Q	CDH12	SNP	Missense_Mutation	5	21751992	C	T	19	61
BRCA	TCGA-A8-A09Q	SLC45A2	SNP	Missense_Mutation	5	33984503	G	C	38	54
BRCA	TCGA-A8-A09Q	KIAA0947	SNP	Missense_Mutation	5	5462931	A	C	3	60
BRCA	TCGA-A8-A09Q	KIF2A	SNP	Silent	5	61658362	T	C	59	71
BRCA	TCGA-A8-A09Q	THBS4	SNP	Missense_Mutation	5	79357584	G	A	38	50
BRCA	TCGA-A8-A09Q	GPR98	SNP	Silent	5	90106086	C	T	27	54
BRCA	TCGA-A8-A09Q	GRIK2	SNP	Nonsense_Mutation	6	102337557	C	T	31	68
BRCA	TCGA-A8-A09Q	NEDD9	SNP	Silent	6	11191331	C	T	23	19
BRCA	TCGA-A8-A09Q	T	SNP	Missense_Mutation	6	166580202	G	T	42	96
BRCA	TCGA-A8-A09Q	KIF25	SNP	Silent	6	168440805	G	A	37	47
BRCA	TCGA-A8-A09Q	HIST1H2AE	SNP	Missense_Mutation	6	26217305	C	T	24	70
BRCA	TCGA-A8-A09Q	AARS2	SNP	Missense_Mutation	6	44274674	C	G	20	84
BRCA	TCGA-A8-A09Q	MUC17	SNP	Silent	7	100678735	C	G	21	36
BRCA	TCGA-A8-A09Q	FSCN3	SNP	Missense_Mutation	7	127238597	T	C	56	74
BRCA	TCGA-A8-A09Q	SLC13A4	SNP	Missense_Mutation	7	135380224	G	T	42	52
BRCA	TCGA-A8-A09Q	CHST12	SNP	Silent	7	2473288	C	T	31	48
BRCA	TCGA-A8-A09Q	TRPS1	SNP	Missense_Mutation	8	116632015	G	A	43	62
BRCA	TCGA-A8-A09Q	SLC18A1	SNP	Silent	8	20008221	G	T	45	50
BRCA	TCGA-A8-A09Q	SLC18A1	SNP	Missense_Mutation	8	20022582	C	G	32	96
BRCA	TCGA-A8-A09Q	SORBS3	SNP	Silent	8	22428563	C	T	26	53
BRCA	TCGA-A8-A09Q	CSMD1	SNP	Missense_Mutation	8	3855553	G	T	48	66
BRCA	TCGA-A8-A09Q	SDR16C5	SNP	Nonsense_Mutation	8	57214113	C	A	24	55
BRCA	TCGA-A8-A09Q	PRDM14	SNP	Silent	8	70981496	C	T	24	50
BRCA	TCGA-A8-A09Q	CCDC107	SNP	Silent	9	35660406	T	C	51	51
BRCA	TCGA-A8-A09Q	TLN1	SNP	Missense_Mutation	9	35722177	A	G	10	93
BRCA	TCGA-A8-A09Q	PCSK5	SNP	Splice_Site	9	78789900	A	G	3	90
BRCA	TCGA-A8-A09Q	PTPRD	SNP	Missense_Mutation	9	8471045	C	T	23	96
BRCA	TCGA-A8-A09Q	PTCH1	SNP	Missense_Mutation	9	98231318	C	A	32	53
BRCA	TCGA-A8-A09Q	PTCH1	SNP	Silent	9	98231321	C	G	27	42
BRCA	TCGA-A8-A09R	DARC	SNP	Missense_Mutation	1	159175674	T	A	59	51
BRCA	TCGA-A8-A09R	IARS2	SNP	Missense_Mutation	1	220307827	G	T	42	95
BRCA	TCGA-A8-A09R	AIM1L	SNP	Missense_Mutation	1	26664147	G	T	43	60
BRCA	TCGA-A8-A09R	ZNF644	DEL	In_Frame_Del	1	91403092	TCC	-	50	81
BRCA	TCGA-A8-A09R	TGFBR3	SNP	Missense_Mutation	1	92177900	C	T	28	86
BRCA	TCGA-A8-A09R	GATA3	INS	Frame_Shift_Ins	10	8115874	-	G	31	85
BRCA	TCGA-A8-A09R	HSPA8	DEL	In_Frame_Del	11	122928986	TTTCAT	-	52	78
BRCA	TCGA-A8-A09R	TRIM68	SNP	Missense_Mutation	11	4621685	C	T	19	53
BRCA	TCGA-A8-A09R	GLYAT	SNP	Missense_Mutation	11	58477428	C	A	25	56
BRCA	TCGA-A8-A09R	TBX3	SNP	Nonsense_Mutation	12	115118832	C	T	21	100
BRCA	TCGA-A8-A09R	CIT	SNP	Missense_Mutation	12	120156521	C	T	23	88
BRCA	TCGA-A8-A09R	PPFIA2	SNP	Missense_Mutation	12	81851615	C	A	25	84
BRCA	TCGA-A8-A09R	COL4A1	SNP	Silent	13	110839539	C	T	23	46
BRCA	TCGA-A8-A09R	AP1G2	SNP	Missense_Mutation	14	24030809	C	T	31	51
BRCA	TCGA-A8-A09R	SYNE2	DEL	Frame_Shift_Del	14	64516385	AG	-	7	31
BRCA	TCGA-A8-A09R	SIPA1L1	SNP	Silent	14	72171448	T	C	49	62
BRCA	TCGA-A8-A09R	RYR3	SNP	Splice_Site	15	34115275	T	G	57	91
BRCA	TCGA-A8-A09R	TGM7	SNP	Missense_Mutation	15	43571436	C	T	32	52
BRCA	TCGA-A8-A09R	ACAN	SNP	Missense_Mutation	15	89401208	C	A	25	59
BRCA	TCGA-A8-A09R	MYH11	SNP	Missense_Mutation	16	15797924	A	G	4	74
BRCA	TCGA-A8-A09R	SMG1	SNP	Splice_site	16	18847853	A	G	14	94
BRCA	TCGA-A8-A09R	ZFHX3	SNP	Silent	16	72830233	C	T	27	46
BRCA	TCGA-A8-A09R	OR4D2	SNP	Missense_Mutation	17	56247170	G	T	45	70
BRCA	TCGA-A8-A09R	KCNJ2	SNP	Missense_Mutation	17	68172397	T	C	49	71
BRCA	TCGA-A8-A09R	RYR1	SNP	Silent	19	38976764	G	A	42	48
BRCA	TCGA-A8-A09R	SP100	SNP	Missense_Mutation	2	231379957	G	C	33	76
BRCA	TCGA-A8-A09R	SMYD1	DEL	In_Frame_Del	2	88396144	AGA	-	7	45
BRCA	TCGA-A8-A09R	ASXL1	SNP	Silent	20	31022345	C	T	27	32
BRCA	TCGA-A8-A09R	RPRD1B	SNP	Missense_Mutation	20	36662443	C	T	21	98
BRCA	TCGA-A8-A09R	STAU1	SNP	Missense_Mutation	20	47734496	C	T	28	85
BRCA	TCGA-A8-A09R	NFATC2	SNP	Silent	20	50140351	G	A	39	49
BRCA	TCGA-A8-A09R	PLCB1	SNP	Nonsense_Mutation	20	8737739	C	T	19	71
BRCA	TCGA-A8-A09R	POTEH	DEL	In_Frame_Del	22	16277750	ATT	-	8	56
BRCA	TCGA-A8-A09R	PGAM4	SNP	Missense_Mutation	23	77224588	A	C	4	71
BRCA	TCGA-A8-A09R	MAD2L1	SNP	Missense_Mutation	4	120981377	G	T	44	96
BRCA	TCGA-A8-A09R	TCF7	SNP	Missense_Mutation	5	133477961	G	T	35	98
BRCA	TCGA-A8-A09R	SGCD	SNP	Missense_Mutation	5	156186373	G	T	48	96
BRCA	TCGA-A8-A09R	FGFR4	SNP	Silent	5	176519392	C	T	19	42
BRCA	TCGA-A8-A09R	MAN1A1	SNP	Silent	6	119569483	A	G	4	68
BRCA	TCGA-A8-A09R	BTN3A3	SNP	Silent	6	26452000	A	G	7	36
BRCA	TCGA-A8-A09R	SERPINB1	SNP	Missense_Mutation	6	2833961	C	T	27	70
BRCA	TCGA-A8-A09R	SND1	SNP	Missense_Mutation	7	127326706	C	T	31	98
BRCA	TCGA-A8-A09R	NUB1	SNP	Missense_Mutation	7	151064964	G	C	33	64
BRCA	TCGA-A8-A09R	ATP6V1B2	DEL	In_Frame_Del	8	20077864	CTCAGAGCA	-	24	95
BRCA	TCGA-A8-A09R	TEX15	SNP	Missense_Mutation	8	30705950	C	G	20	45
BRCA	TCGA-A8-A09R	JPH1	SNP	Missense_Mutation	8	75227343	G	A	38	68
BRCA	TCGA-A8-A09R	CNTLN	SNP	Missense_Mutation	9	17332708	G	C	33	68
BRCA	TCGA-A8-A09R	RUSC2	SNP	Missense_Mutation	9	35546754	G	T	39	64
BRCA	TCGA-A8-A09T	HRNR	SNP	Nonsense_Mutation	1	152191578	G	A	40	44
BRCA	TCGA-A8-A09T	PTPN14	SNP	Missense_Mutation	1	214557496	G	A	42	100
BRCA	TCGA-A8-A09T	TTC4	SNP	Missense_Mutation	1	55194092	T	C	54	72
BRCA	TCGA-A8-A09T	RAB30	SNP	Silent	11	82698729	G	A	45	52
BRCA	TCGA-A8-A09T	COL4A2	SNP	Missense_Mutation	13	111156284	G	A	37	52
BRCA	TCGA-A8-A09T	MAGEL2	SNP	Missense_Mutation	15	23890251	C	T	27	50
BRCA	TCGA-A8-A09T	RYR3	SNP	Silent	15	33795930	C	T	27	61
BRCA	TCGA-A8-A09T	CSNK2A2	SNP	Missense_Mutation	16	58200581	C	G	27	100
BRCA	TCGA-A8-A09T	ATAD5	SNP	Missense_Mutation	17	29221047	A	G	1	62
BRCA	TCGA-A8-A09T	PREPL	SNP	Nonsense_Mutation	2	44556197	G	A	46	57
BRCA	TCGA-A8-A09T	RETSAT	SNP	Missense_Mutation	2	85571455	A	T	11	53
BRCA	TCGA-A8-A09T	GNAS	SNP	Missense_Mutation	20	57484420	C	T	23	70
BRCA	TCGA-A8-A09T	MAGEC1	SNP	Missense_Mutation	23	140994265	G	A	45	53
BRCA	TCGA-A8-A09T	PLCXD2	SNP	Missense_Mutation	3	111432878	C	T	19	56
BRCA	TCGA-A8-A09T	COL7A1	SNP	Missense_Mutation	3	48612280	C	A	24	69
BRCA	TCGA-A8-A09T	VGLL3	SNP	Missense_Mutation	3	87018135	G	A	46	72
BRCA	TCGA-A8-A09T	TMPRSS11B	DEL	Splice_Site	4	69101719	C	-	17	60
BRCA	TCGA-A8-A09T	ANKRD34B	SNP	Missense_Mutation	5	79855031	C	A	30	67
BRCA	TCGA-A8-A09T	KIAA1009	SNP	Silent	6	84922694	C	T	31	41
BRCA	TCGA-A8-A09T	KIAA1429	SNP	Missense_Mutation	8	95508070	A	G	2	67
BRCA	TCGA-A8-A09T	SVEP1	SNP	Missense_Mutation	9	113189893	C	T	19	70
BRCA	TCGA-A8-A09T	TRPM3	SNP	Missense_Mutation	9	73442886	C	A	17	78
BRCA	TCGA-A8-A09V	OR10J1	SNP	Missense_Mutation	1	159410003	G	A	40	68
BRCA	TCGA-A8-A09V	PADI3	SNP	Silent	1	17575713	G	A	47	59
BRCA	TCGA-A8-A09V	CR1	SNP	Missense_Mutation	1	207793390	C	G	24	57
BRCA	TCGA-A8-A09V	PRDM16	SNP	Missense_Mutation	1	3347638	G	A	38	45
BRCA	TCGA-A8-A09V	BARHL2	SNP	Silent	1	91182534	C	T	23	54
BRCA	TCGA-A8-A09V	SFXN2	SNP	Splice_site	10	104489151	G	A	35	100
BRCA	TCGA-A8-A09V	MUC2	SNP	Silent	11	1092321	C	T	19	45
BRCA	TCGA-A8-A09V	SNRNP35	SNP	Missense_Mutation	12	123950441	C	A	18	54
BRCA	TCGA-A8-A09V	RNASE2	SNP	Silent	14	21424383	G	A	39	36
BRCA	TCGA-A8-A09V	SNAP23	DEL	Frame_Shift_Del	15	42820532	TG	-	51	49
BRCA	TCGA-A8-A09V	CDH1	INS	In_Frame_Ins	16	68842438	-	CCC	45	56
BRCA	TCGA-A8-A09V	RYR1	SNP	Silent	19	38976254	G	A	39	33
BRCA	TCGA-A8-A09V	NPAS1	SNP	Missense_Mutation	19	47543707	G	C	34	68
BRCA	TCGA-A8-A09V	MUC16	SNP	Splice_site	19	9018133	C	A	24	61
BRCA	TCGA-A8-A09V	FARSB	SNP	Missense_Mutation	2	223436667	G	C	45	97
BRCA	TCGA-A8-A09V	CXorf65	SNP	Missense_Mutation	23	70323923	G	T	37	68
BRCA	TCGA-A8-A09V	COMMD2	DEL	In_Frame_Del	3	149470040	GAA	-	41	54
BRCA	TCGA-A8-A09V	OPA1	DEL	In_Frame_Del	3	193353241	AGG	-	3	92
BRCA	TCGA-A8-A09V	PFDN6	SNP	Missense_Mutation	6	33258127	A	G	5	81
BRCA	TCGA-A8-A09V	SPACA1	DEL	Frame_Shift_Del	6	88769287	CA	-	29	57
BRCA	TCGA-A8-A09V	CUX1	SNP	Silent	7	101838792	G	A	39	46
BRCA	TCGA-A8-A09W	HMCN1	SNP	Missense_Mutation	1	186014957	C	G	18	75
BRCA	TCGA-A8-A09W	UBR4	SNP	Missense_Mutation	1	19419810	T	A	56	89
BRCA	TCGA-A8-A09W	DENND1B	SNP	Missense_Mutation	1	197479779	A	T	12	53
BRCA	TCGA-A8-A09W	SYT2	SNP	Missense_Mutation	1	202571070	A	T	11	91
BRCA	TCGA-A8-A09W	DSTYK	SNP	Missense_Mutation	1	205116809	C	G	22	99
BRCA	TCGA-A8-A09W	USH2A	SNP	Missense_Mutation	1	215844496	G	C	42	62
BRCA	TCGA-A8-A09W	RYR2	SNP	Silent	1	237791276	C	T	23	19
BRCA	TCGA-A8-A09W	CYP4B1	SNP	Missense_Mutation	1	47279655	A	C	14	63
BRCA	TCGA-A8-A09W	CRTAC1	SNP	Missense_Mutation	10	99696026	G	A	38	64
BRCA	TCGA-A8-A09W	SIK3	SNP	Missense_Mutation	11	116730122	C	A	26	50
BRCA	TCGA-A8-A09W	RIC8A	DEL	Splice_Site	11	213293	AAACAGCAT	-	9	58
BRCA	TCGA-A8-A09W	OR5A2	SNP	Missense_Mutation	11	59190301	C	G	30	62
BRCA	TCGA-A8-A09W	BRMS1	SNP	Missense_Mutation	11	66107594	G	C	33	85
BRCA	TCGA-A8-A09W	STK33	SNP	Missense_Mutation	11	8457117	A	G	2	52
BRCA	TCGA-A8-A09W	FAT3	DEL	Frame_Shift_Del	11	92531848	CTAT	-	20	100
BRCA	TCGA-A8-A09W	POLE	SNP	Missense_Mutation	12	133226423	A	G	8	88
BRCA	TCGA-A8-A09W	TMTC1	SNP	Missense_Mutation	12	29709922	C	T	27	57
BRCA	TCGA-A8-A09W	RHNO1	SNP	Missense_Mutation	12	2994559	G	T	34	26
BRCA	TCGA-A8-A09W	CD163L1	SNP	Missense_Mutation	12	7559293	C	T	27	67
BRCA	TCGA-A8-A09W	PCID2	SNP	Missense_Mutation	13	113851457	T	C	53	41
BRCA	TCGA-A8-A09W	RB1	SNP	Nonsense_Mutation	13	49030343	T	G	50	81
BRCA	TCGA-A8-A09W	MYH7	SNP	Missense_Mutation	14	23885466	T	G	55	90
BRCA	TCGA-A8-A09W	HECTD1	SNP	Missense_Mutation	14	31605846	C	T	23	99
BRCA	TCGA-A8-A09W	ATP8B4	SNP	Missense_Mutation	15	50273432	C	G	29	97
BRCA	TCGA-A8-A09W	FURIN	SNP	Missense_Mutation	15	91420216	G	C	47	97
BRCA	TCGA-A8-A09W	CRYM	SNP	Missense_Mutation	16	21288757	G	T	34	61
BRCA	TCGA-A8-A09W	RBBP6	SNP	Missense_Mutation	16	24582883	A	G	10	72
BRCA	TCGA-A8-A09W	CBFB	SNP	Nonsense_Mutation	16	67070595	G	A	42	62
BRCA	TCGA-A8-A09W	CDH1	SNP	Splice_Site	16	68856129	G	A	36	95
BRCA	TCGA-A8-A09W	VAT1L	SNP	Silent	16	77859253	T	G	55	46
BRCA	TCGA-A8-A09W	FOXN1	SNP	Silent	17	26861801	G	A	48	58
BRCA	TCGA-A8-A09W	EFCAB5	SNP	Silent	17	28380487	G	T	38	55
BRCA	TCGA-A8-A09W	KRT9	SNP	Silent	17	39728035	G	T	34	38
BRCA	TCGA-A8-A09W	SP6	SNP	Silent	17	45924911	G	A	45	81
BRCA	TCGA-A8-A09W	CLTC	SNP	Silent	17	57746199	A	G	4	54
BRCA	TCGA-A8-A09W	FN3KRP	SNP	Missense_Mutation	17	80684731	G	A	40	47
BRCA	TCGA-A8-A09W	L3MBTL4	SNP	Missense_Mutation	18	6093468	C	T	19	52
BRCA	TCGA-A8-A09W	GALR1	SNP	Missense_Mutation	18	74962829	A	G	5	87
BRCA	TCGA-A8-A09W	KEAP1	INS	Frame_Shift_Ins	19	10600498	-	T	18	98
BRCA	TCGA-A8-A09W	KEAP1	DEL	Frame_Shift_Del	19	10600502	G	-	36	58
BRCA	TCGA-A8-A09W	SLC27A1	SNP	Silent	19	17597396	G	A	46	48
BRCA	TCGA-A8-A09W	UNC13A	SNP	Splice_Site	19	17741462	C	G	18	89
BRCA	TCGA-A8-A09W	FCGBP	SNP	Silent	19	40367763	A	G	7	34
BRCA	TCGA-A8-A09W	SHC2	SNP	Missense_Mutation	19	434769	G	A	38	51
BRCA	TCGA-A8-A09W	SYMPK	SNP	Missense_Mutation	19	46332318	G	T	42	59
BRCA	TCGA-A8-A09W	CLEC11A	SNP	Missense_Mutation	19	51226792	G	A	34	67
BRCA	TCGA-A8-A09W	SNTG2	SNP	Missense_Mutation	2	1251147	T	G	54	49
BRCA	TCGA-A8-A09W	TNFAIP6	SNP	Missense_Mutation	2	152214261	C	A	20	71
BRCA	TCGA-A8-A09W	TTN	SNP	Missense_Mutation	2	179584289	T	C	51	63
BRCA	TCGA-A8-A09W	TNS1	SNP	Missense_Mutation	2	218713217	T	C	51	48
BRCA	TCGA-A8-A09W	PLEKHH2	SNP	Missense_Mutation	2	43927079	G	A	34	84
BRCA	TCGA-A8-A09W	TMEM131	SNP	Missense_Mutation	2	98409376	G	C	43	87
BRCA	TCGA-A8-A09W	RBM12	SNP	Missense_Mutation	20	34240663	T	A	63	76
BRCA	TCGA-A8-A09W	NFATC2	SNP	Silent	20	50139844	C	T	23	40
BRCA	TCGA-A8-A09W	MUM1L1	DEL	Frame_Shift_Del	23	105449486	TCCAGAT	-	58	56
BRCA	TCGA-A8-A09W	LRCH2	SNP	Splice_Site	23	114400906	C	A	20	91
BRCA	TCGA-A8-A09W	DCAF12L1	SNP	Silent	23	125685656	C	G	29	54
BRCA	TCGA-A8-A09W	GPR112	DEL	Frame_Shift_Del	23	135404976	GAAGAGGT	-	41	61
BRCA	TCGA-A8-A09W	FMR1NB	SNP	Nonsense_Mutation	23	147084783	C	T	21	50
BRCA	TCGA-A8-A09W	PIR	SNP	Missense_Mutation	23	15474117	G	C	47	71
BRCA	TCGA-A8-A09W	DDX53	SNP	Missense_Mutation	23	23019754	T	G	57	67
BRCA	TCGA-A8-A09W	FAM47C	SNP	Missense_Mutation	23	37028375	G	A	38	45
BRCA	TCGA-A8-A09W	WDR13	SNP	Silent	23	48457210	G	A	38	40
BRCA	TCGA-A8-A09W	PAGE1	SNP	Silent	23	49454040	C	T	24	45
BRCA	TCGA-A8-A09W	FAM155B	SNP	Missense_Mutation	23	68725857	C	G	25	67
BRCA	TCGA-A8-A09W	DGAT2L6	SNP	Silent	23	69397492	A	G	4	38
BRCA	TCGA-A8-A09W	ZCCHC5	SNP	Missense_Mutation	23	77913268	T	A	54	55
BRCA	TCGA-A8-A09W	BRWD3	SNP	Missense_Mutation	23	79990631	C	T	20	94
BRCA	TCGA-A8-A09W	PCDH11X	SNP	Missense_Mutation	23	91873468	G	T	33	58
BRCA	TCGA-A8-A09W	ABI3BP	DEL	In_Frame_Del	3	100595385	TTCCTTGGGACA	-	64	59
BRCA	TCGA-A8-A09W	GUCA1C	SNP	Missense_Mutation	3	108639378	C	G	32	78
BRCA	TCGA-A8-A09W	GFM1	SNP	Missense_Mutation	3	158370027	G	T	45	95
BRCA	TCGA-A8-A09W	CHL1	SNP	Silent	3	370003	C	T	31	42
BRCA	TCGA-A8-A09W	ITPR1	SNP	Missense_Mutation	3	4730242	G	A	38	86
BRCA	TCGA-A8-A09W	WNT5A	SNP	Silent	3	55513565	C	T	32	88
BRCA	TCGA-A8-A09W	SH3TC2	SNP	Missense_Mutation	5	148427522	C	T	27	67
BRCA	TCGA-A8-A09W	OPRM1	DEL	Frame_Shift_Del	6	154360648	CGCACAG	-	31	60
BRCA	TCGA-A8-A09W	ARID1B	SNP	Splice_site	6	157505569	G	T	47	100
BRCA	TCGA-A8-A09W	KIF13A	SNP	Nonsense_Mutation	6	17781438	G	C	44	63
BRCA	TCGA-A8-A09W	KLC4	SNP	Missense_Mutation	6	43038519	A	T	2	48
BRCA	TCGA-A8-A09W	DST	SNP	Missense_Mutation	6	56330983	G	T	41	100
BRCA	TCGA-A8-A09W	UBE3C	SNP	Missense_Mutation	7	157041140	G	A	40	100
BRCA	TCGA-A8-A09W	ADCYAP1R1	DEL	Frame_Shift_Del	7	31142941	GGAAAGA	-	43	66
BRCA	TCGA-A8-A09W	ADCYAP1R1	DEL	Frame_Shift_Del	7	31142951	GTGTTTGAGCTGGGGCTGGG	-	40	94
BRCA	TCGA-A8-A09W	ADCYAP1R1	INS	Frame_Shift_Ins	7	31142972	-	AA	54	86
BRCA	TCGA-A8-A09W	HECW1	SNP	Missense_Mutation	7	43591930	G	A	39	100
BRCA	TCGA-A8-A09W	IDO2	SNP	Missense_Mutation	8	39872802	C	A	24	81
BRCA	TCGA-A8-A09W	TNFSF8	SNP	Splice_site	9	117692389	C	G	23	80
BRCA	TCGA-A8-A09X	SCNM1	SNP	Missense_Mutation	1	151138644	G	A	41	90
BRCA	TCGA-A8-A09X	C1orf114	SNP	Missense_Mutation	1	169391389	G	A	41	69
BRCA	TCGA-A8-A09X	CSRP1	SNP	Missense_Mutation	1	201465427	G	C	39	86
BRCA	TCGA-A8-A09X	FGFR2	SNP	Missense_Mutation	10	123256149	G	C	41	100
BRCA	TCGA-A8-A09X	PLCE1	SNP	Silent	10	96018635	C	T	25	50
BRCA	TCGA-A8-A09X	KIF18A	SNP	Missense_Mutation	11	28119324	C	A	32	55
BRCA	TCGA-A8-A09X	PPP2R5B	SNP	Missense_Mutation	11	64695334	G	C	33	90
BRCA	TCGA-A8-A09X	RAB30	SNP	Silent	11	82693237	G	A	45	89
BRCA	TCGA-A8-A09X	CIT	SNP	Missense_Mutation	12	120189920	G	A	37	87
BRCA	TCGA-A8-A09X	EP400	SNP	Missense_Mutation	12	132522231	G	C	48	96
BRCA	TCGA-A8-A09X	NOP2	SNP	Missense_Mutation	12	6672822	C	T	29	62
BRCA	TCGA-A8-A09X	OR4K1	SNP	Silent	14	20404131	C	T	31	47
BRCA	TCGA-A8-A09X	PRMT5	SNP	Missense_Mutation	14	23395473	G	A	45	66
BRCA	TCGA-A8-A09X	SCFD1	SNP	Missense_Mutation	14	31144222	T	G	56	84
BRCA	TCGA-A8-A09X	PNN	SNP	Splice_site	14	39648666	G	A	39	96
BRCA	TCGA-A8-A09X	GCH1	SNP	Silent	14	55310747	G	A	45	57
BRCA	TCGA-A8-A09X	VPS18	SNP	Missense_Mutation	15	41191587	C	T	23	73
BRCA	TCGA-A8-A09X	CDH1	DEL	Frame_Shift_Del	16	68845625	G	-	37	95
BRCA	TCGA-A8-A09X	CACNA1G	SNP	Silent	17	48674212	G	A	47	57
BRCA	TCGA-A8-A09X	RGS9	SNP	Missense_Mutation	17	63185416	G	A	40	42
BRCA	TCGA-A8-A09X	TMEM104	SNP	Silent	17	72786401	C	T	19	50
BRCA	TCGA-A8-A09X	TP53	SNP	Missense_Mutation	17	7577543	C	T	29	94
BRCA	TCGA-A8-A09X	ZNF532	SNP	Silent	18	56586482	C	T	31	45
BRCA	TCGA-A8-A09X	OR10H1	SNP	Missense_Mutation	19	15918448	C	T	19	60
BRCA	TCGA-A8-A09X	HAPLN4	SNP	Missense_Mutation	19	19369354	G	T	33	62
BRCA	TCGA-A8-A09X	LILRB2	SNP	Missense_Mutation	19	54783676	G	T	34	44
BRCA	TCGA-A8-A09X	ZNF266	SNP	Missense_Mutation	19	9524313	G	A	45	86
BRCA	TCGA-A8-A09X	MAP4K4	SNP	Missense_Mutation	2	102504327	G	T	44	100
BRCA	TCGA-A8-A09X	GPR155	SNP	Missense_Mutation	2	175324714	C	A	31	58
BRCA	TCGA-A8-A09X	STAT4	SNP	Missense_Mutation	2	191919242	A	G	10	69
BRCA	TCGA-A8-A09X	ASXL2	DNP	Nonsense_Mutation	2	25976464	CA	AT	29	99
BRCA	TCGA-A8-A09X	EPAS1	SNP	Missense_Mutation	2	46611734	G	A	40	62
BRCA	TCGA-A8-A09X	OTX1	SNP	Silent	2	63282998	G	A	40	46
BRCA	TCGA-A8-A09X	MACROD2	SNP	Silent	20	15866446	A	G	3	51
BRCA	TCGA-A8-A09X	MYLK2	SNP	Missense_Mutation	20	30419874	C	T	19	70
BRCA	TCGA-A8-A09X	STAU1	SNP	Missense_Mutation	20	47734890	G	A	33	69
BRCA	TCGA-A8-A09X	ADAMTS1	SNP	Missense_Mutation	21	28210587	G	T	45	76
BRCA	TCGA-A8-A09X	GPR112	SNP	Missense_Mutation	23	135455156	G	A	39	53
BRCA	TCGA-A8-A09X	DCAF8L1	SNP	Missense_Mutation	23	27997690	C	T	31	61
BRCA	TCGA-A8-A09X	DMD	SNP	Missense_Mutation	23	31462683	C	T	27	58
BRCA	TCGA-A8-A09X	DMD	SNP	Missense_Mutation	23	32481659	T	G	62	87
BRCA	TCGA-A8-A09X	B4GALT4	SNP	Missense_Mutation	3	118942945	G	A	41	100
BRCA	TCGA-A8-A09X	MBNL1	SNP	Splice_site	3	152150507	C	T	21	95
BRCA	TCGA-A8-A09X	PPM1L	SNP	Silent	3	160783285	C	T	19	45
BRCA	TCGA-A8-A09X	GPD1L	SNP	Missense_Mutation	3	32180207	C	T	29	53
BRCA	TCGA-A8-A09X	SEL1L3	SNP	Missense_Mutation	4	25831746	C	G	29	65
BRCA	TCGA-A8-A09X	ATP10D	SNP	Missense_Mutation	4	47525064	A	T	10	91
BRCA	TCGA-A8-A09X	C5orf20	SNP	Nonsense_Mutation	5	134782595	G	T	44	53
BRCA	TCGA-A8-A09X	PCDHB17	SNP	Missense_Mutation	5	140537273	G	A	38	48
BRCA	TCGA-A8-A09X	ZFPM2	SNP	Missense_Mutation	8	106646553	A	T	10	90
BRCA	TCGA-A8-A09X	DLGAP2	SNP	Silent	8	1624725	G	A	39	48
BRCA	TCGA-A8-A09X	TSTD2	SNP	Silent	9	100368473	T	C	64	54
BRCA	TCGA-A8-A09X	SVEP1	SNP	Silent	9	113312283	C	T	25	56
BRCA	TCGA-A8-A09X	GNE	SNP	Missense_Mutation	9	36217532	G	T	35	79
BRCA	TCGA-A8-A09X	ZBTB5	SNP	Missense_Mutation	9	37441772	C	T	17	70
BRCA	TCGA-A8-A0A1	SYCP1	SNP	Missense_Mutation	1	115453031	C	T	17	61
BRCA	TCGA-A8-A0A1	PADI2	SNP	Splice_site	1	17431555	C	T	27	74
BRCA	TCGA-A8-A0A1	MUTYH	SNP	Missense_Mutation	1	45800095	T	A	60	49
BRCA	TCGA-A8-A0A1	TTC39A	SNP	Missense_Mutation	1	51756290	A	G	8	91
BRCA	TCGA-A8-A0A1	SELRC1	SNP	Missense_Mutation	1	53153745	C	T	21	98
BRCA	TCGA-A8-A0A1	COL24A1	SNP	Nonsense_Mutation	1	86249998	G	A	39	50
BRCA	TCGA-A8-A0A1	KCNIP2	SNP	Silent	10	103590905	A	T	15	60
BRCA	TCGA-A8-A0A1	SFXN2	SNP	Splice_site	10	104491539	G	A	39	51
BRCA	TCGA-A8-A0A1	ANO5	SNP	Missense_Mutation	11	22272512	G	A	45	98
BRCA	TCGA-A8-A0A1	ATP6V0A2	SNP	Nonsense_Mutation	12	124218490	G	A	44	75
BRCA	TCGA-A8-A0A1	DCP1B	SNP	Silent	12	2061777	G	A	34	32
BRCA	TCGA-A8-A0A1	PPP1R1A	SNP	Missense_Mutation	12	54976558	G	A	40	64
BRCA	TCGA-A8-A0A1	MTUS2	SNP	Silent	13	30066850	A	G	8	49
BRCA	TCGA-A8-A0A1	CASC5	DEL	Frame_Shift_Del	15	40913811	AAAATTTGCTAAAGCATGACAGT	-	1	57
BRCA	TCGA-A8-A0A1	MAP1A	SNP	Missense_Mutation	15	43817540	C	T	26	53
BRCA	TCGA-A8-A0A1	MSLNL	SNP	Missense_Mutation	16	823012	G	C	38	55
BRCA	TCGA-A8-A0A1	CHTF18	SNP	Silent	16	846999	G	A	43	46
BRCA	TCGA-A8-A0A1	NOS2	SNP	Missense_Mutation	17	26086072	C	A	28	57
BRCA	TCGA-A8-A0A1	CCL13	SNP	Missense_Mutation	17	32685053	C	A	18	73
BRCA	TCGA-A8-A0A1	KRT34	SNP	Missense_Mutation	17	39537409	G	A	40	71
BRCA	TCGA-A8-A0A1	GALR1	SNP	Missense_Mutation	18	74980670	G	A	38	82
BRCA	TCGA-A8-A0A1	ZNF675	SNP	Missense_Mutation	19	23836263	T	C	59	54
BRCA	TCGA-A8-A0A1	TSHZ3	SNP	Missense_Mutation	19	31770617	C	T	31	86
BRCA	TCGA-A8-A0A1	RYR1	SNP	Missense_Mutation	19	38951142	C	T	19	61
BRCA	TCGA-A8-A0A1	LRP2	SNP	Missense_Mutation	2	170029674	C	T	25	100
BRCA	TCGA-A8-A0A1	HCK	SNP	Missense_Mutation	20	30689216	G	A	38	75
BRCA	TCGA-A8-A0A1	SOX10	INS	Frame_Shift_Ins	22	38373898	-	A	32	96
BRCA	TCGA-A8-A0A1	KIAA1644	SNP	Missense_Mutation	22	44681446	C	T	23	56
BRCA	TCGA-A8-A0A1	WDR44	SNP	Silent	23	117521341	C	T	22	49
BRCA	TCGA-A8-A0A1	GABRA3	SNP	Missense_Mutation	23	151453148	T	A	59	68
BRCA	TCGA-A8-A0A1	FOXP3	SNP	Silent	23	49107891	G	A	38	37
BRCA	TCGA-A8-A0A1	GOLGB1	SNP	Missense_Mutation	3	121415253	C	T	31	61
BRCA	TCGA-A8-A0A1	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-A8-A0A1	PCDHGC5	SNP	Silent	5	140869114	C	T	24	53
BRCA	TCGA-A8-A0A1	FAT2	SNP	Silent	5	150901072	G	A	40	48
BRCA	TCGA-A8-A0A1	LOC728554	SNP	Missense_Mutation	5	177309706	C	T	27	88
BRCA	TCGA-A8-A0A1	AKAP12	DEL	Frame_Shift_Del	6	151673850	G	-	45	70
BRCA	TCGA-A8-A0A1	BTNL2	SNP	Missense_Mutation	6	32372739	G	T	48	79
BRCA	TCGA-A8-A0A1	RREB1	SNP	Silent	6	7226853	G	A	39	44
BRCA	TCGA-A8-A0A1	KCNK9	SNP	Missense_Mutation	8	140630698	G	A	39	56
BRCA	TCGA-A8-A0A1	NDOR1	SNP	Silent	9	140109082	G	T	44	58
BRCA	TCGA-A8-A0A1	NOL6	SNP	Missense_Mutation	9	33467828	C	T	23	56
BRCA	TCGA-A8-A0A1	DIRAS2	SNP	Missense_Mutation	9	93375994	G	A	40	98
BRCA	TCGA-A8-A0A2	APEX1	SNP	Missense_Mutation	14	20923818	G	C	43	78
BRCA	TCGA-A8-A0A2	LRFN5	SNP	Silent	14	42361011	C	A	25	53
BRCA	TCGA-A8-A0A2	VWA3A	SNP	Silent	16	22159556	C	T	26	57
BRCA	TCGA-A8-A0A2	CDH1	DEL	In_Frame_Del	16	68842427	GCCCAGAAAATGAAAAAG	-	46	61
BRCA	TCGA-A8-A0A2	NCOR1	DEL	Frame_Shift_Del	17	15995308	CGCTGGTAGAGAGCATAGC	-	31	79
BRCA	TCGA-A8-A0A2	KRT12	SNP	Silent	17	39022941	A	G	7	43
BRCA	TCGA-A8-A0A2	C18orf34	SNP	Missense_Mutation	18	30554604	C	A	28	57
BRCA	TCGA-A8-A0A2	SPTBN4	SNP	Silent	19	40996086	G	A	38	35
BRCA	TCGA-A8-A0A2	RSPH6A	SNP	Silent	19	46307978	G	A	40	51
BRCA	TCGA-A8-A0A2	KCNC3	SNP	Silent	19	50827193	G	A	40	35
BRCA	TCGA-A8-A0A2	SHANK1	SNP	Missense_Mutation	19	51189556	G	A	43	74
BRCA	TCGA-A8-A0A2	IMP4	SNP	Missense_Mutation	2	131103227	G	A	39	77
BRCA	TCGA-A8-A0A2	ZC3H15	SNP	Silent	2	187371487	C	T	30	51
BRCA	TCGA-A8-A0A2	CYP27A1	SNP	Silent	2	219674428	C	T	19	49
BRCA	TCGA-A8-A0A2	PDCD1	SNP	Missense_Mutation	2	242794881	C	T	19	37
BRCA	TCGA-A8-A0A2	FKBP1B	SNP	Silent	2	24285915	C	A	32	54
BRCA	TCGA-A8-A0A2	INPP4A	SNP	Silent	2	99155420	C	A	27	53
BRCA	TCGA-A8-A0A2	DOK5	SNP	Splice_Site	20	53205225	G	T	33	100
BRCA	TCGA-A8-A0A2	CLDN17	SNP	Missense_Mutation	21	31538360	C	A	28	50
BRCA	TCGA-A8-A0A2	MAGED1	SNP	Missense_Mutation	23	51638306	C	T	29	49
BRCA	TCGA-A8-A0A2	SUSD5	SNP	Missense_Mutation	3	33194254	T	A	50	67
BRCA	TCGA-A8-A0A2	FAM208A	SNP	Missense_Mutation	3	56667624	T	C	49	51
BRCA	TCGA-A8-A0A2	SPOCK1	SNP	Missense_Mutation	5	136314405	C	T	19	56
BRCA	TCGA-A8-A0A2	BRD8	SNP	Missense_Mutation	5	137506082	C	T	32	98
BRCA	TCGA-A8-A0A2	PCDHB5	SNP	Nonsense_Mutation	5	140516085	G	T	33	97
BRCA	TCGA-A8-A0A2	GABRG2	SNP	Missense_Mutation	5	161576155	G	T	46	87
BRCA	TCGA-A8-A0A2	AP3B1	SNP	Missense_Mutation	5	77458675	T	C	52	58
BRCA	TCGA-A8-A0A2	ZFPM2	SNP	Missense_Mutation	8	106813892	C	A	20	67
BRCA	TCGA-A8-A0A2	TNFSF15	SNP	Silent	9	117553070	G	A	34	55
BRCA	TCGA-A8-A0A2	TTC39B	SNP	Silent	9	15177715	A	G	2	52
BRCA	TCGA-A8-A0A4	ANGPTL7	SNP	Silent	1	11254592	C	T	32	62
BRCA	TCGA-A8-A0A4	RYR2	SNP	Silent	1	237550619	C	T	23	9
BRCA	TCGA-A8-A0A4	OR2L2	SNP	Silent	1	248202361	G	A	46	32
BRCA	TCGA-A8-A0A4	OSCP1	SNP	Missense_Mutation	1	36887790	A	C	8	46
BRCA	TCGA-A8-A0A4	C10orf120	SNP	Silent	10	124457723	T	A	62	41
BRCA	TCGA-A8-A0A4	CISD1	SNP	Missense_Mutation	10	60037062	C	T	23	76
BRCA	TCGA-A8-A0A4	ADAMTS14	SNP	Silent	10	72517774	C	T	19	46
BRCA	TCGA-A8-A0A4	SPI1	SNP	Missense_Mutation	11	47377079	C	A	27	75
BRCA	TCGA-A8-A0A4	TBX3	INS	Frame_Shift_Ins	12	115118894	-	T	48	47
BRCA	TCGA-A8-A0A4	C12orf56	SNP	Missense_Mutation	12	64746720	C	A	30	56
BRCA	TCGA-A8-A0A4	ESR2	SNP	Missense_Mutation	14	64727440	G	A	39	91
BRCA	TCGA-A8-A0A4	TLN2	SNP	Nonsense_Mutation	15	63029121	C	T	21	85
BRCA	TCGA-A8-A0A4	ITGA11	SNP	Silent	15	68624257	G	A	40	71
BRCA	TCGA-A8-A0A4	MAN2C1	SNP	Silent	15	75649184	G	A	40	49
BRCA	TCGA-A8-A0A4	CIITA	SNP	Silent	16	10996535	T	C	60	27
BRCA	TCGA-A8-A0A4	CDH1	INS	Frame_Shift_Ins	16	68862203	-	C	10	89
BRCA	TCGA-A8-A0A4	NEURL4	SNP	Missense_Mutation	17	7224098	C	A	18	53
BRCA	TCGA-A8-A0A4	MBD1	SNP	Missense_Mutation	18	47796443	G	C	47	53
BRCA	TCGA-A8-A0A4	ANGPTL4	SNP	Splice_site	19	8438768	T	G	53	68
BRCA	TCGA-A8-A0A4	UGGT1	SNP	Missense_Mutation	2	128884987	A	G	4	89
BRCA	TCGA-A8-A0A4	TTC21B	SNP	Missense_Mutation	2	166786867	C	T	19	99
BRCA	TCGA-A8-A0A4	TTN	SNP	Missense_Mutation	2	179434772	G	A	38	89
BRCA	TCGA-A8-A0A4	WDR45	SNP	Missense_Mutation	23	48932881	C	A	28	76
BRCA	TCGA-A8-A0A4	NHSL2	SNP	Silent	23	71359816	C	T	27	38
BRCA	TCGA-A8-A0A4	LPAR4	SNP	Nonsense_Mutation	23	78011420	G	T	41	74
BRCA	TCGA-A8-A0A4	ZNF727	SNP	Missense_Mutation	7	63529306	C	T	30	49
BRCA	TCGA-A8-A0A7	CD1B	SNP	Missense_Mutation	1	158300633	C	A	30	50
BRCA	TCGA-A8-A0A7	PAPPA2	SNP	Missense_Mutation	1	176671822	C	G	32	71
BRCA	TCGA-A8-A0A7	RGS21	SNP	Missense_Mutation	1	192335120	G	A	45	81
BRCA	TCGA-A8-A0A7	ASPM	SNP	Missense_Mutation	1	197069570	T	C	61	51
BRCA	TCGA-A8-A0A7	CELA3A	SNP	Missense_Mutation	1	22332186	G	A	45	63
BRCA	TCGA-A8-A0A7	MCOLN3	SNP	Silent	1	85486834	G	C	33	64
BRCA	TCGA-A8-A0A7	MTF2	SNP	Silent	1	93594862	G	A	33	65
BRCA	TCGA-A8-A0A7	TMEM14D	SNP	Missense_Mutation	10	70304327	G	C	45	47
BRCA	TCGA-A8-A0A7	TET1	SNP	Missense_Mutation	10	70333675	C	T	29	54
BRCA	TCGA-A8-A0A7	TET1	SNP	Silent	10	70451292	C	G	32	61
BRCA	TCGA-A8-A0A7	GUCY1A2	SNP	Missense_Mutation	11	106810633	C	T	29	65
BRCA	TCGA-A8-A0A7	NCAM1	SNP	Missense_Mutation	11	113076824	G	A	45	100
BRCA	TCGA-A8-A0A7	BACE1	SNP	Missense_Mutation	11	117161249	C	T	29	100
BRCA	TCGA-A8-A0A7	OR8D4	SNP	Nonsense_Mutation	11	123777208	C	T	29	78
BRCA	TCGA-A8-A0A7	ANO3	SNP	Silent	11	26569062	C	T	32	51
BRCA	TCGA-A8-A0A7	AMBRA1	SNP	Silent	11	46564007	C	T	29	48
BRCA	TCGA-A8-A0A7	LPXN	SNP	Missense_Mutation	11	58338121	G	A	41	44
BRCA	TCGA-A8-A0A7	SUV420H1	SNP	Missense_Mutation	11	67939066	G	A	41	100
BRCA	TCGA-A8-A0A7	SLC5A8	SNP	Silent	12	101555848	G	A	36	53
BRCA	TCGA-A8-A0A7	CMAS	SNP	Missense_Mutation	12	22214234	G	A	33	97
BRCA	TCGA-A8-A0A7	BCAT1	SNP	Missense_Mutation	12	25054773	G	A	45	53
BRCA	TCGA-A8-A0A7	KRT5	SNP	Silent	12	52910585	G	A	45	60
BRCA	TCGA-A8-A0A7	ESYT1	SNP	Missense_Mutation	12	56522465	A	G	16	71
BRCA	TCGA-A8-A0A7	LRRIQ1	SNP	Missense_Mutation	12	85518188	G	A	33	52
BRCA	TCGA-A8-A0A7	WNK1	SNP	Missense_Mutation	12	994442	C	T	29	70
BRCA	TCGA-A8-A0A7	NBEA	SNP	Missense_Mutation	13	36202288	G	A	37	100
BRCA	TCGA-A8-A0A7	SERPINE3	SNP	Missense_Mutation	13	51915321	G	A	45	56
BRCA	TCGA-A8-A0A7	SYNE2	SNP	Missense_Mutation	14	64669610	G	C	45	100
BRCA	TCGA-A8-A0A7	ST20-MTHFS	SNP	Missense_Mutation	15	80181521	G	C	47	63
BRCA	TCGA-A8-A0A7	BLM	SNP	Missense_Mutation	15	91293183	G	A	33	56
BRCA	TCGA-A8-A0A7	GP2	SNP	Silent	16	20331055	G	C	33	57
BRCA	TCGA-A8-A0A7	CDH1	SNP	Missense_Mutation	16	68844139	G	A	45	94
BRCA	TCGA-A8-A0A7	PLCG2	SNP	Missense_Mutation	16	81969832	C	G	29	59
BRCA	TCGA-A8-A0A7	ASIC2	SNP	Silent	17	31439028	G	A	33	56
BRCA	TCGA-A8-A0A7	TMEM99	SNP	Missense_Mutation	17	38991475	C	T	32	59
BRCA	TCGA-A8-A0A7	ANKFY1	SNP	Missense_Mutation	17	4109717	C	T	31	77
BRCA	TCGA-A8-A0A7	RPL26	SNP	Missense_Mutation	17	8285480	C	T	31	95
BRCA	TCGA-A8-A0A7	MYOM1	SNP	Silent	18	3116332	C	T	29	59
BRCA	TCGA-A8-A0A7	CCDC11	SNP	Nonsense_Mutation	18	47787564	C	A	32	75
BRCA	TCGA-A8-A0A7	TCF4	SNP	Silent	18	52896160	G	A	45	54
BRCA	TCGA-A8-A0A7	PDE4A	SNP	Silent	19	10572600	G	A	45	57
BRCA	TCGA-A8-A0A7	RYR1	SNP	Splice_site	19	38966090	G	A	39	64
BRCA	TCGA-A8-A0A7	ZNF574	SNP	Missense_Mutation	19	42585168	G	A	46	64
BRCA	TCGA-A8-A0A7	SYMPK	SNP	Splice_Site	19	46341874	C	G	32	91
BRCA	TCGA-A8-A0A7	ZNF160	SNP	Missense_Mutation	19	53573310	C	G	32	44
BRCA	TCGA-A8-A0A7	LONP1	SNP	Missense_Mutation	19	5692118	G	A	37	49
BRCA	TCGA-A8-A0A7	TMEM87B	SNP	Missense_Mutation	2	112873704	C	T	29	78
BRCA	TCGA-A8-A0A7	MGAT5	SNP	Missense_Mutation	2	135012084	G	A	37	79
BRCA	TCGA-A8-A0A7	HAT1	SNP	Nonsense_Mutation	2	172848213	C	T	29	99
BRCA	TCGA-A8-A0A7	ABCG5	SNP	Missense_Mutation	2	44040269	G	C	33	47
BRCA	TCGA-A8-A0A7	ADD2	SNP	Silent	2	70905998	G	A	37	49
BRCA	TCGA-A8-A0A7	ITCH	SNP	Missense_Mutation	20	33026307	G	A	45	69
BRCA	TCGA-A8-A0A7	TGIF2-C20ORF24	SNP	Missense_Mutation	20	35207199	G	A	45	79
BRCA	TCGA-A8-A0A7	TGM2	SNP	Silent	20	36776435	G	A	41	61
BRCA	TCGA-A8-A0A7	NCOA3	SNP	Missense_Mutation	20	46252812	C	A	29	100
BRCA	TCGA-A8-A0A7	MYH9	SNP	Missense_Mutation	22	36745008	G	C	35	78
BRCA	TCGA-A8-A0A7	EP300	SNP	Nonsense_Mutation	22	41545099	C	T	29	97
BRCA	TCGA-A8-A0A7	ENOX2	SNP	Missense_Mutation	23	129822967	C	T	29	89
BRCA	TCGA-A8-A0A7	KDM5C	SNP	Missense_Mutation	23	53223539	C	T	31	91
BRCA	TCGA-A8-A0A7	TMPRSS7	SNP	Silent	3	111768781	C	G	32	37
BRCA	TCGA-A8-A0A7	PIK3CB	SNP	Missense_Mutation	3	138474685	C	T	32	76
BRCA	TCGA-A8-A0A7	PIK3CA	SNP	Missense_Mutation	3	178938934	G	A	45	98
BRCA	TCGA-A8-A0A7	DVL3	SNP	Missense_Mutation	3	183883238	C	T	30	86
BRCA	TCGA-A8-A0A7	ROBO1	SNP	Silent	3	78666819	C	G	29	49
BRCA	TCGA-A8-A0A7	BMP3	SNP	Silent	4	81967616	G	A	33	63
BRCA	TCGA-A8-A0A7	PCDHA2	SNP	Silent	5	140176479	C	A	31	53
BRCA	TCGA-A8-A0A7	VWA7	SNP	Missense_Mutation	6	31733811	G	A	37	74
BRCA	TCGA-A8-A0A7	SKIV2L	SNP	Silent	6	31931758	C	T	29	68
BRCA	TCGA-A8-A0A7	CTTNBP2	SNP	Nonsense_Mutation	7	117432081	G	C	45	63
BRCA	TCGA-A8-A0A7	ZNF800	SNP	Missense_Mutation	7	127013543	G	A	33	96
BRCA	TCGA-A8-A0A7	STK31	SNP	Missense_Mutation	7	23827616	G	T	45	90
BRCA	TCGA-A8-A0A7	COL1A2	SNP	Missense_Mutation	7	94047827	G	C	33	64
BRCA	TCGA-A8-A0A7	FBXO43	SNP	Missense_Mutation	8	101153488	C	T	29	76
BRCA	TCGA-A8-A0A7	PABPC1	SNP	Missense_Mutation	8	101719153	G	A	33	96
BRCA	TCGA-A8-A0A7	PTBP3	SNP	Missense_Mutation	9	114997156	G	A	45	76
BRCA	TCGA-A8-A0A9	PRRC2C	SNP	Missense_Mutation	1	171482185	G	A	40	100
BRCA	TCGA-A8-A0A9	LAMB3	SNP	Missense_Mutation	1	209790887	C	T	29	70
BRCA	TCGA-A8-A0A9	COL24A1	SNP	Missense_Mutation	1	86578258	C	A	21	79
BRCA	TCGA-A8-A0A9	FRMD4A	DEL	In_Frame_Del	10	13702348	CTT	-	24	65
BRCA	TCGA-A8-A0A9	ARHGAP21	SNP	Missense_Mutation	10	24874774	C	G	32	60
BRCA	TCGA-A8-A0A9	ZMYND11	SNP	Missense_Mutation	10	292731	C	G	29	100
BRCA	TCGA-A8-A0A9	FBXO18	SNP	Nonsense_Mutation	10	5945069	C	T	29	83
BRCA	TCGA-A8-A0A9	FRA10AC1	SNP	Missense_Mutation	10	95459821	C	G	29	93
BRCA	TCGA-A8-A0A9	PARVA	SNP	Missense_Mutation	11	12495366	G	A	37	94
BRCA	TCGA-A8-A0A9	QSER1	SNP	Missense_Mutation	11	32955992	C	T	24	73
BRCA	TCGA-A8-A0A9	ST5	SNP	Missense_Mutation	11	8732399	C	T	27	84
BRCA	TCGA-A8-A0A9	SBNO1	SNP	Missense_Mutation	12	123812064	C	T	31	100
BRCA	TCGA-A8-A0A9	NAV3	SNP	Silent	12	78515855	G	A	39	54
BRCA	TCGA-A8-A0A9	PRTG	SNP	Missense_Mutation	15	55932020	C	T	19	73
BRCA	TCGA-A8-A0A9	RASGRF1	SNP	Silent	15	79298692	G	A	40	47
BRCA	TCGA-A8-A0A9	CDH1	SNP	Nonsense_Mutation	16	68849604	C	T	21	50
BRCA	TCGA-A8-A0A9	DHX38	SNP	Missense_Mutation	16	72141353	C	A	18	68
BRCA	TCGA-A8-A0A9	ITGAE	SNP	Missense_Mutation	17	3656666	G	A	40	75
BRCA	TCGA-A8-A0A9	APOH	SNP	Missense_Mutation	17	64210602	A	T	8	43
BRCA	TCGA-A8-A0A9	CNTROB	SNP	Missense_Mutation	17	7843471	G	T	44	58
BRCA	TCGA-A8-A0A9	ZNF407	SNP	Missense_Mutation	18	72344114	G	C	33	59
BRCA	TCGA-A8-A0A9	MUC16	SNP	Missense_Mutation	19	9086614	G	T	33	59
BRCA	TCGA-A8-A0A9	UBXN4	SNP	Missense_Mutation	2	136519446	G	C	33	54
BRCA	TCGA-A8-A0A9	PVALB	SNP	Missense_Mutation	22	37209714	C	T	21	83
BRCA	TCGA-A8-A0A9	GPC3	SNP	Missense_Mutation	23	132887945	C	T	31	93
BRCA	TCGA-A8-A0A9	SMC1A	SNP	Missense_Mutation	23	53439190	C	G	32	93
BRCA	TCGA-A8-A0A9	BBX	SNP	Missense_Mutation	3	107429348	G	C	41	84
BRCA	TCGA-A8-A0A9	EPHB1	SNP	Silent	3	134884859	G	A	39	34
BRCA	TCGA-A8-A0A9	TRPC1	SNP	Missense_Mutation	3	142443528	G	A	41	79
BRCA	TCGA-A8-A0A9	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-A8-A0A9	USP19	SNP	Missense_Mutation	3	49153206	C	T	27	75
BRCA	TCGA-A8-A0A9	CCDC66	SNP	Missense_Mutation	3	56605211	G	C	45	83
BRCA	TCGA-A8-A0A9	ADAMTS3	SNP	Silent	4	73179510	C	T	32	79
BRCA	TCGA-A8-A0A9	AKD1	SNP	Nonsense_Mutation	6	109820405	G	A	45	50
BRCA	TCGA-A8-A0A9	HIST1H2AH	SNP	Silent	6	27115249	C	G	23	53
BRCA	TCGA-A8-A0A9	PTK7	SNP	Missense_Mutation	6	43111207	G	T	33	72
BRCA	TCGA-A8-A0A9	EPHB4	SNP	Silent	7	100410501	C	T	29	60
BRCA	TCGA-A8-A0A9	INHBA	SNP	Silent	7	41739757	G	C	39	62
BRCA	TCGA-A8-A0A9	PCLO	SNP	Missense_Mutation	7	82538314	C	T	19	87
BRCA	TCGA-A8-A0A9	KCNB2	SNP	Missense_Mutation	8	73848282	G	A	38	56
BRCA	TCGA-A8-A0A9	GRIN3A	SNP	Missense_Mutation	9	104335778	C	T	19	56
BRCA	TCGA-A8-A0A9	GTF3C4	SNP	Missense_Mutation	9	135554618	G	A	33	95
BRCA	TCGA-A8-A0A9	CNTNAP3	SNP	Missense_Mutation	9	39109165	C	T	27	42
BRCA	TCGA-A8-A0A9	NTRK2	SNP	Missense_Mutation	9	87322806	G	A	40	64
BRCA	TCGA-A8-A0AB	FLG	SNP	Missense_Mutation	1	152282683	C	T	19	36
BRCA	TCGA-A8-A0AB	CLSPN	DEL	Frame_Shift_Del	1	36202522	T	-	56	70
BRCA	TCGA-A8-A0AB	INPP5B	SNP	Missense_Mutation	1	38409488	C	T	23	56
BRCA	TCGA-A8-A0AB	IPO13	SNP	Missense_Mutation	1	44424472	C	G	24	79
BRCA	TCGA-A8-A0AB	KIAA1462	SNP	Missense_Mutation	10	30318244	C	G	20	55
BRCA	TCGA-A8-A0AB	SNRPN	SNP	Missense_Mutation	15	25221514	G	T	40	69
BRCA	TCGA-A8-A0AB	HERC2	SNP	Silent	15	28421867	A	G	14	41
BRCA	TCGA-A8-A0AB	SRP14	DEL	In_Frame_Del	15	40330494	TCT	-	50	92
BRCA	TCGA-A8-A0AB	CDH1	INS	Frame_Shift_Ins	16	68847278	-	A	51	53
BRCA	TCGA-A8-A0AB	MYO1D	SNP	Missense_Mutation	17	30821847	C	T	23	57
BRCA	TCGA-A8-A0AB	ERBB2	SNP	Missense_Mutation	17	37880220	T	C	63	90
BRCA	TCGA-A8-A0AB	CHD3	SNP	Missense_Mutation	17	7796758	G	C	45	92
BRCA	TCGA-A8-A0AB	MYH10	SNP	Missense_Mutation	17	8439105	C	A	29	100
BRCA	TCGA-A8-A0AB	CCDC159	DEL	In_Frame_Del	19	11465265	GGC	-	43	60
BRCA	TCGA-A8-A0AB	MAST1	SNP	Silent	19	12984565	G	A	39	50
BRCA	TCGA-A8-A0AB	SLC6A16	SNP	Missense_Mutation	19	49814294	G	A	39	60
BRCA	TCGA-A8-A0AB	RUNX1	SNP	Missense_Mutation	21	36252946	T	C	60	92
BRCA	TCGA-A8-A0AB	FAM47A	SNP	Missense_Mutation	23	34149384	G	A	39	54
BRCA	TCGA-A8-A0AB	SMARCC1	SNP	Silent	3	47676719	G	C	39	45
BRCA	TCGA-A8-A0AB	PCDHA10	SNP	Silent	5	140236812	G	A	40	45
BRCA	TCGA-A8-A0AB	ALDH8A1	SNP	Missense_Mutation	6	135239594	C	T	31	85
BRCA	TCGA-A8-A0AB	TRIP6	DEL	Frame_Shift_Del	7	100468023	T	-	55	88
BRCA	TCGA-A8-A0AB	C8orf33	SNP	Silent	8	146278127	C	T	20	64
BRCA	TCGA-A8-A0AD	PIGR	SNP	Missense_Mutation	1	207112736	G	T	40	39
BRCA	TCGA-A8-A0AD	OR2T3	SNP	Missense_Mutation	1	248637580	T	A	51	49
BRCA	TCGA-A8-A0AD	LRRC55	SNP	Silent	11	56949488	C	T	28	62
BRCA	TCGA-A8-A0AD	NPAS4	SNP	Missense_Mutation	11	66190213	G	A	40	94
BRCA	TCGA-A8-A0AD	SCARB1	SNP	Missense_Mutation	12	125271972	G	C	42	80
BRCA	TCGA-A8-A0AD	PCDH9	SNP	Missense_Mutation	13	67205358	G	T	36	60
BRCA	TCGA-A8-A0AD	NLRC3	SNP	Missense_Mutation	16	3613263	C	T	27	52
BRCA	TCGA-A8-A0AD	CTCF	SNP	Missense_Mutation	16	67645922	C	T	29	99
BRCA	TCGA-A8-A0AD	ZFHX3	INS	Frame_Shift_Ins	16	72830410	-	T	28	68
BRCA	TCGA-A8-A0AD	NF1	INS	Splice_Site	17	29508508	-	T	44	81
BRCA	TCGA-A8-A0AD	KIF2B	SNP	Missense_Mutation	17	51900728	G	A	38	50
BRCA	TCGA-A8-A0AD	GRIN2C	SNP	Missense_Mutation	17	72840611	C	T	22	84
BRCA	TCGA-A8-A0AD	NPC1	SNP	Missense_Mutation	18	21118629	T	A	58	79
BRCA	TCGA-A8-A0AD	CIRBP	SNP	Missense_Mutation	19	1272041	G	A	45	81
BRCA	TCGA-A8-A0AD	WDR83	SNP	Missense_Mutation	19	12783689	G	C	45	94
BRCA	TCGA-A8-A0AD	NDUFA3	SNP	Missense_Mutation	19	54609692	T	G	63	34
BRCA	TCGA-A8-A0AD	RPS5	SNP	Missense_Mutation	19	58899562	T	C	56	79
BRCA	TCGA-A8-A0AD	ITGAV	SNP	Missense_Mutation	2	187455212	C	G	31	60
BRCA	TCGA-A8-A0AD	OTOS	SNP	Silent	2	241079498	C	T	28	69
BRCA	TCGA-A8-A0AD	POMC	SNP	Silent	2	25384121	C	A	21	49
BRCA	TCGA-A8-A0AD	STON1-GTF2A1L	SNP	Missense_Mutation	2	48808110	C	T	21	70
BRCA	TCGA-A8-A0AD	IFT52	SNP	Nonsense_Mutation	20	42271262	C	T	21	81
BRCA	TCGA-A8-A0AD	RUNX1	SNP	Missense_Mutation	21	36171616	G	A	36	72
BRCA	TCGA-A8-A0AD	MTM1	SNP	Missense_Mutation	23	149809752	A	G	4	87
BRCA	TCGA-A8-A0AD	OTUD6A	SNP	Silent	23	69283094	G	A	38	32
BRCA	TCGA-A8-A0AD	FOXP1	SNP	Splice_Site	3	71090684	C	T	24	99
BRCA	TCGA-A8-A0AD	IL17RC	SNP	Silent	3	9959098	C	T	28	55
BRCA	TCGA-A8-A0AD	BTC	SNP	Missense_Mutation	4	75681165	C	T	23	59
BRCA	TCGA-A8-A0AD	PCDHGA9	DEL	Frame_Shift_Del	5	140782854	A	-	10	74
BRCA	TCGA-A8-A0AD	NSD1	SNP	Silent	5	176562356	A	G	15	59
BRCA	TCGA-A8-A0AD	HNRNPAB	SNP	Silent	5	177634110	T	C	52	77
BRCA	TCGA-A8-A0AD	KIF6	SNP	Missense_Mutation	6	39330216	T	A	56	79
BRCA	TCGA-A8-A0AD	CUX1	SNP	Silent	7	101840509	A	T	8	24
BRCA	TCGA-A8-A0AD	PAX4	SNP	Silent	7	127253883	C	A	22	58
BRCA	TCGA-A8-A0AD	FAM135B	SNP	Silent	8	139144953	G	A	40	51
BRCA	TCGA-A8-A0AD	ADAMDEC1	SNP	Silent	8	24259485	T	G	64	44
BRCA	TCGA-AC-A23C	AIM2	SNP	Missense_Mutation	1	159043162	G	A	46	49
BRCA	TCGA-AC-A23C	ATP1A4	SNP	Silent	1	160124840	T	C	49	46
BRCA	TCGA-AC-A23C	KCNT2	SNP	Missense_Mutation	1	196394988	C	T	32	98
BRCA	TCGA-AC-A23C	CENPF	SNP	Silent	1	214816025	C	A	32	49
BRCA	TCGA-AC-A23C	HEATR1	SNP	Missense_Mutation	1	236766623	C	G	29	82
BRCA	TCGA-AC-A23C	TMCO2	SNP	Missense_Mutation	1	40713810	C	G	30	64
BRCA	TCGA-AC-A23C	DNMBP	SNP	Silent	10	101715245	G	C	41	50
BRCA	TCGA-AC-A23C	SMC3	SNP	Missense_Mutation	10	112362317	G	A	42	98
BRCA	TCGA-AC-A23C	GPAM	SNP	Silent	10	113920522	T	G	61	63
BRCA	TCGA-AC-A23C	USP6NL	SNP	Silent	10	11505403	A	C	10	40
BRCA	TCGA-AC-A23C	LYZL2	SNP	Missense_Mutation	10	30915760	T	C	64	60
BRCA	TCGA-AC-A23C	PTEN	DEL	Frame_Shift_Del	10	89711928	AA	-	13	69
BRCA	TCGA-AC-A23C	ANGPTL5	SNP	Silent	11	101777841	G	A	45	52
BRCA	TCGA-AC-A23C	MUC2	SNP	Missense_Mutation	11	1096456	G	C	37	62
BRCA	TCGA-AC-A23C	USP47	SNP	Silent	11	11957978	C	T	27	41
BRCA	TCGA-AC-A23C	ETS1	SNP	Missense_Mutation	11	128426192	C	A	17	60
BRCA	TCGA-AC-A23C	VWCE	SNP	Missense_Mutation	11	61026260	G	A	37	57
BRCA	TCGA-AC-A23C	RAB3IL1	SNP	Missense_Mutation	11	61674931	C	G	32	65
BRCA	TCGA-AC-A23C	RIN1	SNP	Missense_Mutation	11	66102191	G	A	39	83
BRCA	TCGA-AC-A23C	INPPL1	SNP	Missense_Mutation	11	71942144	G	C	47	96
BRCA	TCGA-AC-A23C	KIAA1467	SNP	Silent	12	13208573	G	A	33	85
BRCA	TCGA-AC-A23C	EP400	DEL	In_Frame_Del	12	132475210	AGA	-	15	50
BRCA	TCGA-AC-A23C	PTPRO	SNP	Missense_Mutation	12	15636960	C	T	29	85
BRCA	TCGA-AC-A23C	OR6C76	SNP	Silent	12	55820676	C	G	32	35
BRCA	TCGA-AC-A23C	DNAJC14	DEL	Frame_Shift_Del	12	56222324	CT	-	24	61
BRCA	TCGA-AC-A23C	ZMYM5	SNP	Missense_Mutation	13	20398780	G	A	45	67
BRCA	TCGA-AC-A23C	TBC1D4	SNP	Missense_Mutation	13	75900540	G	A	33	73
BRCA	TCGA-AC-A23C	AHNAK2	SNP	Missense_Mutation	14	105416842	T	A	56	59
BRCA	TCGA-AC-A23C	SIX4	SNP	Missense_Mutation	14	61180171	G	A	42	96
BRCA	TCGA-AC-A23C	SLC24A4	SNP	Missense_Mutation	14	92909751	G	A	40	54
BRCA	TCGA-AC-A23C	MTMR10	SNP	Silent	15	31233955	G	C	41	43
BRCA	TCGA-AC-A23C	ZFYVE19	SNP	Missense_Mutation	15	41100005	G	C	41	49
BRCA	TCGA-AC-A23C	ADAMTSL3	SNP	Silent	15	84657563	G	A	48	34
BRCA	TCGA-AC-A23C	ALPK3	SNP	Silent	15	85382269	T	C	59	56
BRCA	TCGA-AC-A23C	FOPNL	SNP	Missense_Mutation	16	15961319	A	C	2	53
BRCA	TCGA-AC-A23C	N4BP1	SNP	Missense_Mutation	16	48595832	C	T	22	90
BRCA	TCGA-AC-A23C	GLG1	DEL	Frame_Shift_Del	16	74501683	AG	-	7	93
BRCA	TCGA-AC-A23C	NCOR1	SNP	Nonsense_Mutation	17	15965432	G	A	45	89
BRCA	TCGA-AC-A23C	TAOK1	SNP	Silent	17	27778590	C	T	25	57
BRCA	TCGA-AC-A23C	NF1	SNP	Missense_Mutation	17	29553598	A	T	9	88
BRCA	TCGA-AC-A23C	SLFN11	SNP	Nonsense_Mutation	17	33679925	G	C	45	47
BRCA	TCGA-AC-A23C	ZPBP2	SNP	Missense_Mutation	17	38032947	C	T	24	83
BRCA	TCGA-AC-A23C	ZPBP2	SNP	Missense_Mutation	17	38033019	C	G	32	55
BRCA	TCGA-AC-A23C	PPM1D	SNP	Nonsense_Mutation	17	58740529	C	A	27	59
BRCA	TCGA-AC-A23C	SS18	SNP	Missense_Mutation	18	23658072	A	T	9	88
BRCA	TCGA-AC-A23C	HDHD2	SNP	Missense_Mutation	18	44660972	C	G	29	94
BRCA	TCGA-AC-A23C	PPP5C	SNP	Missense_Mutation	19	46893337	T	C	50	75
BRCA	TCGA-AC-A23C	ZNF274	SNP	Missense_Mutation	19	58724135	A	G	14	74
BRCA	TCGA-AC-A23C	ZNF544	SNP	Missense_Mutation	19	58774007	C	T	29	49
BRCA	TCGA-AC-A23C	TBC1D8	SNP	Missense_Mutation	2	101638182	C	G	29	84
BRCA	TCGA-AC-A23C	KCNS3	SNP	Missense_Mutation	2	18112363	C	G	21	87
BRCA	TCGA-AC-A23C	BCS1L	SNP	Missense_Mutation	2	219527298	C	T	32	100
BRCA	TCGA-AC-A23C	CAD	SNP	Missense_Mutation	2	27447691	G	T	43	85
BRCA	TCGA-AC-A23C	ANKRD36	SNP	Missense_Mutation	2	97864218	C	T	21	54
BRCA	TCGA-AC-A23C	XKR7	SNP	Missense_Mutation	20	30585069	C	T	27	74
BRCA	TCGA-AC-A23C	CHD6	SNP	Silent	20	40049605	T	G	49	44
BRCA	TCGA-AC-A23C	SLC9A8	SNP	Missense_Mutation	20	48479578	A	T	6	90
BRCA	TCGA-AC-A23C	OSBP2	SNP	Missense_Mutation	22	31289126	C	T	24	27
BRCA	TCGA-AC-A23C	TMPRSS6	SNP	Silent	22	37492106	G	A	33	78
BRCA	TCGA-AC-A23C	FMR1	SNP	Missense_Mutation	23	147007128	A	C	16	89
BRCA	TCGA-AC-A23C	RBBP7	SNP	Splice_Site	23	16863950	C	A	18	96
BRCA	TCGA-AC-A23C	TAB3	SNP	Silent	23	30873374	G	A	36	53
BRCA	TCGA-AC-A23C	FAM47A	SNP	Missense_Mutation	23	34149096	A	G	9	49
BRCA	TCGA-AC-A23C	USP51	SNP	Missense_Mutation	23	55513916	T	C	63	67
BRCA	TCGA-AC-A23C	EDA2R	SNP	Silent	23	65824309	T	C	56	64
BRCA	TCGA-AC-A23C	MED12	SNP	Missense_Mutation	23	70351944	A	T	9	85
BRCA	TCGA-AC-A23C	TBX22	SNP	Missense_Mutation	23	79279656	C	T	19	55
BRCA	TCGA-AC-A23C	POF1B	SNP	Missense_Mutation	23	84601036	G	C	45	60
BRCA	TCGA-AC-A23C	GOLGB1	SNP	Missense_Mutation	3	121410623	C	G	29	73
BRCA	TCGA-AC-A23C	COL6A6	SNP	Missense_Mutation	3	130318623	C	A	22	55
BRCA	TCGA-AC-A23C	LRRIQ4	SNP	Missense_Mutation	3	169550895	A	G	9	60
BRCA	TCGA-AC-A23C	PIK3CA	SNP	Missense_Mutation	3	178936095	A	G	7	90
BRCA	TCGA-AC-A23C	DCUN1D1	SNP	Nonsense_Mutation	3	182683349	C	A	32	100
BRCA	TCGA-AC-A23C	CADM2	SNP	Missense_Mutation	3	85984959	A	C	5	80
BRCA	TCGA-AC-A23C	NPY1R	SNP	Missense_Mutation	4	164247139	C	T	29	59
BRCA	TCGA-AC-A23C	TACC3	SNP	Nonsense_Mutation	4	1742588	G	T	45	52
BRCA	TCGA-AC-A23C	LNX1	SNP	Missense_Mutation	4	54343119	C	T	31	81
BRCA	TCGA-AC-A23C	DGKQ	SNP	Missense_Mutation	4	961414	C	G	29	85
BRCA	TCGA-AC-A23C	TRIO	SNP	Missense_Mutation	5	14358362	G	C	41	98
BRCA	TCGA-AC-A23C	DOCK2	SNP	Missense_Mutation	5	169141180	C	T	30	100
BRCA	TCGA-AC-A23C	AHRR	SNP	Silent	5	427993	C	T	30	62
BRCA	TCGA-AC-A23C	TRIM23	SNP	Missense_Mutation	5	64905155	C	A	21	97
BRCA	TCGA-AC-A23C	TTC37	SNP	Splice_Site	5	94852114	C	A	32	82
BRCA	TCGA-AC-A23C	PDE10A	SNP	Missense_Mutation	6	165756912	C	T	26	100
BRCA	TCGA-AC-A23C	TCP10	SNP	Missense_Mutation	6	167796310	C	T	23	32
BRCA	TCGA-AC-A23C	HIST1H2BN	SNP	Silent	6	27806523	G	A	33	83
BRCA	TCGA-AC-A23C	UHRF1BP1	SNP	Silent	6	34803151	C	T	29	74
BRCA	TCGA-AC-A23C	KIAA1009	SNP	Missense_Mutation	6	84881431	C	T	29	75
BRCA	TCGA-AC-A23C	DOCK4	SNP	Missense_Mutation	7	111398727	C	T	29	100
BRCA	TCGA-AC-A23C	ZNF786	SNP	Missense_Mutation	7	148767947	G	T	44	89
BRCA	TCGA-AC-A23C	ASIC3	SNP	Missense_Mutation	7	150749825	A	G	13	70
BRCA	TCGA-AC-A23C	CDK14	SNP	Missense_Mutation	7	90355956	G	A	45	83
BRCA	TCGA-AC-A23C	FER1L6	SNP	Missense_Mutation	8	125029949	G	C	42	72
BRCA	TCGA-AC-A23C	ZNF462	DEL	Frame_Shift_Del	9	109746549	TACC	-	57	52
BRCA	TCGA-AC-A23C	PALM2-AKAP2	SNP	Missense_Mutation	9	112930764	A	G	9	78
BRCA	TCGA-AC-A23C	TLN1	SNP	Missense_Mutation	9	35713277	C	T	30	100
BRCA	TCGA-AC-A23E	CEP85	SNP	Missense_Mutation	1	26581958	G	C	43	93
BRCA	TCGA-AC-A23E	SFMBT2	SNP	Missense_Mutation	10	7409820	G	C	47	99
BRCA	TCGA-AC-A23E	COMMD9	SNP	Silent	11	36297762	G	A	36	57
BRCA	TCGA-AC-A23E	C11orf84	SNP	Missense_Mutation	11	63585595	C	T	21	57
BRCA	TCGA-AC-A23E	C2CD3	SNP	Silent	11	73759252	C	A	30	51
BRCA	TCGA-AC-A23E	OR6C65	SNP	Missense_Mutation	12	55794527	C	T	19	52
BRCA	TCGA-AC-A23E	SLC25A47	SNP	Silent	14	100793566	G	A	39	4
BRCA	TCGA-AC-A23E	MAP2K4	DEL	Splice_Site	17	11984671	AG	-	7	89
BRCA	TCGA-AC-A23E	NCOR1	SNP	Nonsense_Mutation	17	16012112	C	A	32	89
BRCA	TCGA-AC-A23E	C17orf66	SNP	Missense_Mutation	17	34182281	G	A	35	59
BRCA	TCGA-AC-A23E	EME1	SNP	Missense_Mutation	17	48453257	G	C	41	54
BRCA	TCGA-AC-A23E	MRPL38	SNP	Nonsense_Mutation	17	73897305	C	T	21	98
BRCA	TCGA-AC-A23E	ZNF560	SNP	Missense_Mutation	19	9577375	G	A	39	49
BRCA	TCGA-AC-A23E	CLCN4	SNP	Missense_Mutation	23	10180564	G	T	44	76
BRCA	TCGA-AC-A23E	FTHL17	SNP	Missense_Mutation	23	31089761	C	A	27	67
BRCA	TCGA-AC-A23E	NIT2	SNP	Silent	3	100058685	G	A	37	36
BRCA	TCGA-AC-A23E	ABTB1	SNP	Silent	3	127398956	C	T	27	49
BRCA	TCGA-AC-A23E	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AC-A23E	SMAD5	DEL	Frame_Shift_Del	5	135489806	AG	-	3	56
BRCA	TCGA-AC-A23E	RNF183	SNP	Missense_Mutation	9	116060076	G	A	39	50
BRCA	TCGA-AC-A23E	PCSK5	DEL	Frame_Shift_Del	9	78790144	AATGGAATGA	-	9	50
BRCA	TCGA-AN-A03X	UBE4B	SNP	Silent	1	10186920	T	C	61	53
BRCA	TCGA-AN-A03X	ANKRD34A	SNP	Missense_Mutation	1	145473902	G	T	38	66
BRCA	TCGA-AN-A03X	SLC45A3	SNP	Nonsense_Mutation	1	205631997	C	A	29	57
BRCA	TCGA-AN-A03X	ZNF669	SNP	Missense_Mutation	1	247263686	C	G	21	52
BRCA	TCGA-AN-A03X	LRRC41	SNP	Silent	1	46745910	G	A	36	57
BRCA	TCGA-AN-A03X	GRIA4	SNP	Silent	11	105623906	C	T	19	50
BRCA	TCGA-AN-A03X	OR6M1	SNP	Missense_Mutation	11	123676738	G	A	40	55
BRCA	TCGA-AN-A03X	OR52J3	SNP	Silent	11	5068157	C	T	19	60
BRCA	TCGA-AN-A03X	SLAIN1	SNP	Missense_Mutation	13	78335020	C	T	32	82
BRCA	TCGA-AN-A03X	AHNAK2	DEL	Frame_Shift_Del	14	105409390	A	-	9	75
BRCA	TCGA-AN-A03X	AHNAK2	INS	Frame_Shift_Ins	14	105409649	-	TT	35	43
BRCA	TCGA-AN-A03X	ZFP36L1	INS	Frame_Shift_Ins	14	69257141	-	C	46	48
BRCA	TCGA-AN-A03X	MOAP1	SNP	Missense_Mutation	14	93650569	C	T	32	69
BRCA	TCGA-AN-A03X	PPIB	SNP	Missense_Mutation	15	64449058	G	A	46	76
BRCA	TCGA-AN-A03X	LOC645752	SNP	Missense_Mutation	15	78212125	C	T	19	45
BRCA	TCGA-AN-A03X	FAM57B	SNP	Missense_Mutation	16	30037078	G	A	43	97
BRCA	TCGA-AN-A03X	MYH8	SNP	Missense_Mutation	17	10304230	G	T	46	100
BRCA	TCGA-AN-A03X	RNFT1	SNP	Missense_Mutation	17	58040308	C	T	32	96
BRCA	TCGA-AN-A03X	GATA6	SNP	Silent	18	19761419	A	G	8	44
BRCA	TCGA-AN-A03X	ARL6IP6	SNP	Missense_Mutation	2	153616311	A	C	4	81
BRCA	TCGA-AN-A03X	NCKAP1	SNP	Missense_Mutation	2	183843631	A	T	5	92
BRCA	TCGA-AN-A03X	CXCR1	SNP	Missense_Mutation	2	219029024	A	G	12	88
BRCA	TCGA-AN-A03X	JAG1	SNP	Missense_Mutation	20	10629222	G	A	36	86
BRCA	TCGA-AN-A03X	BMP2	SNP	Missense_Mutation	20	6759416	C	T	19	100
BRCA	TCGA-AN-A03X	TTC3	SNP	Missense_Mutation	21	38538542	G	T	46	64
BRCA	TCGA-AN-A03X	IL13RA2	SNP	Missense_Mutation	23	114242611	G	A	44	50
BRCA	TCGA-AN-A03X	CSF2RA	SNP	Silent	23	1428407	C	T	23	55
BRCA	TCGA-AN-A03X	FAM48B1	SNP	Missense_Mutation	23	24382429	C	G	30	51
BRCA	TCGA-AN-A03X	HDAC6	SNP	Silent	23	48665033	C	A	24	56
BRCA	TCGA-AN-A03X	ALG1L	SNP	Missense_Mutation	3	125648343	G	A	37	54
BRCA	TCGA-AN-A03X	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-AN-A03X	SQSTM1	DEL	Frame_Shift_Del	5	179250877	GGACCACC	-	43	52
BRCA	TCGA-AN-A03X	MAP3K1	SNP	Nonsense_Mutation	5	56174909	A	T	5	86
BRCA	TCGA-AN-A03X	MAP3K1	DEL	Frame_Shift_Del	5	56180503	AG	-	7	73
BRCA	TCGA-AN-A03X	NSUN2	INS	Frame_Shift_Ins	5	6633015	-	T	6	50
BRCA	TCGA-AN-A03X	PRICKLE4	SNP	Silent	6	41752675	G	A	34	50
BRCA	TCGA-AN-A03X	PIK3CG	SNP	Missense_Mutation	7	106523570	A	T	9	66
BRCA	TCGA-AN-A03X	PRKDC	SNP	Missense_Mutation	8	48771163	T	C	62	76
BRCA	TCGA-AN-A03X	WWP1	SNP	Missense_Mutation	8	87386346	A	T	2	80
BRCA	TCGA-AN-A03Y	GON4L	SNP	Silent	1	155783515	C	T	31	52
BRCA	TCGA-AN-A03Y	TLX1NB	SNP	Silent	10	102849480	C	T	23	56
BRCA	TCGA-AN-A03Y	SLC18A3	SNP	Missense_Mutation	10	50820002	G	A	38	86
BRCA	TCGA-AN-A03Y	LGI1	SNP	Missense_Mutation	10	95557009	G	A	38	68
BRCA	TCGA-AN-A03Y	DEPDC7	SNP	Missense_Mutation	11	33054005	A	C	11	90
BRCA	TCGA-AN-A03Y	UBC	SNP	Missense_Mutation	12	125396469	T	G	58	77
BRCA	TCGA-AN-A03Y	IQSEC3	SNP	Silent	12	250443	C	T	19	43
BRCA	TCGA-AN-A03Y	TPP2	SNP	Missense_Mutation	13	103309552	G	A	45	99
BRCA	TCGA-AN-A03Y	COL4A1	SNP	Missense_Mutation	13	110864808	C	T	23	94
BRCA	TCGA-AN-A03Y	BORA	SNP	Missense_Mutation	13	73321056	A	T	4	61
BRCA	TCGA-AN-A03Y	NOP9	SNP	Silent	14	24774208	G	A	45	54
BRCA	TCGA-AN-A03Y	HIF1A	SNP	Silent	14	62187184	T	C	63	61
BRCA	TCGA-AN-A03Y	LRRK1	SNP	Missense_Mutation	15	101605666	A	G	2	92
BRCA	TCGA-AN-A03Y	CSPG4	SNP	Silent	15	75970186	G	A	39	29
BRCA	TCGA-AN-A03Y	KIF7	SNP	Missense_Mutation	15	90185484	G	A	37	59
BRCA	TCGA-AN-A03Y	TMC5	SNP	Missense_Mutation	16	19498308	T	A	51	90
BRCA	TCGA-AN-A03Y	CDH1	SNP	Nonsense_Mutation	16	68835596	C	T	31	67
BRCA	TCGA-AN-A03Y	NEDD4L	SNP	Missense_Mutation	18	56063421	C	G	30	75
BRCA	TCGA-AN-A03Y	ZNF586	INS	Frame_Shift_Ins	19	58290700	-	T	32	54
BRCA	TCGA-AN-A03Y	MUC16	SNP	Silent	19	9056732	C	T	23	46
BRCA	TCGA-AN-A03Y	CST2	SNP	Nonsense_Mutation	20	23807084	G	A	40	49
BRCA	TCGA-AN-A03Y	ZBED4	SNP	Missense_Mutation	22	50280507	C	T	29	96
BRCA	TCGA-AN-A03Y	OPN1LW	SNP	Silent	23	153416303	G	A	39	25
BRCA	TCGA-AN-A03Y	HLTF	SNP	Silent	3	148750058	G	A	40	56
BRCA	TCGA-AN-A03Y	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AN-A03Y	HRASLS	SNP	Silent	3	192988399	C	A	23	65
BRCA	TCGA-AN-A03Y	SLC25A48	SNP	Nonsense_Mutation	5	135207426	G	A	47	51
BRCA	TCGA-AN-A03Y	HIST1H1T	SNP	Missense_Mutation	6	26107849	G	A	38	47
BRCA	TCGA-AN-A03Y	HIST1H3G	SNP	Missense_Mutation	6	26271482	G	A	43	95
BRCA	TCGA-AN-A03Y	TRIM26	SNP	Missense_Mutation	6	30157808	G	A	40	59
BRCA	TCGA-AN-A03Y	TNFRSF21	SNP	Silent	6	47253822	C	T	23	49
BRCA	TCGA-AN-A03Y	CALCR	DEL	Frame_Shift_Del	7	93065277	AG	-	7	92
BRCA	TCGA-AN-A03Y	PREX2	SNP	Splice_site	8	69012077	A	C	3	77
BRCA	TCGA-AN-A041	FLG	SNP	Missense_Mutation	1	152279873	A	G	12	43
BRCA	TCGA-AN-A041	ISG20L2	SNP	Missense_Mutation	1	156697031	C	A	32	52
BRCA	TCGA-AN-A041	CD1B	SNP	Missense_Mutation	1	158299375	C	T	25	72
BRCA	TCGA-AN-A041	PLXDC2	SNP	Silent	10	20290912	C	A	31	46
BRCA	TCGA-AN-A041	ARHGAP12	SNP	Missense_Mutation	10	32106730	T	C	57	73
BRCA	TCGA-AN-A041	CHAT	SNP	Missense_Mutation	10	50822376	C	G	19	67
BRCA	TCGA-AN-A041	GATA3	DEL	Frame_Shift_Del	10	8111498	GA	-	41	100
BRCA	TCGA-AN-A041	SLC22A11	SNP	Missense_Mutation	11	64332848	G	T	41	49
BRCA	TCGA-AN-A041	DYNC1H1	SNP	Missense_Mutation	14	102494097	G	A	40	100
BRCA	TCGA-AN-A041	LOC100287282	SNP	Missense_Mutation	16	46660467	G	T	42	67
BRCA	TCGA-AN-A041	RBL2	SNP	Missense_Mutation	16	53476745	C	T	31	100
BRCA	TCGA-AN-A041	DHX8	SNP	Missense_Mutation	17	41590796	C	T	22	100
BRCA	TCGA-AN-A041	ZCCHC2	SNP	Missense_Mutation	18	60230264	C	A	30	66
BRCA	TCGA-AN-A041	SAFB	SNP	Missense_Mutation	19	5664427	A	T	4	75
BRCA	TCGA-AN-A041	RTN4	SNP	Missense_Mutation	2	55253661	G	A	33	56
BRCA	TCGA-AN-A041	SNRNP200	SNP	Missense_Mutation	2	96944396	G	C	35	59
BRCA	TCGA-AN-A041	ZAP70	SNP	Silent	2	98354541	C	T	19	52
BRCA	TCGA-AN-A041	NCOA6	SNP	Missense_Mutation	20	33345587	G	C	42	71
BRCA	TCGA-AN-A041	TFDP2	DEL	Frame_Shift_Del	3	141671468	GACTGTTTGGGGCCAGGAACTGCCCA	-	45	86
BRCA	TCGA-AN-A041	RARB	SNP	Missense_Mutation	3	25502731	C	T	22	100
BRCA	TCGA-AN-A041	DALRD3	DEL	Frame_Shift_Del	3	49055227	C	-	26	87
BRCA	TCGA-AN-A041	NKD2	SNP	Silent	5	1034361	C	T	27	49
BRCA	TCGA-AN-A041	TNFAIP8	SNP	Silent	5	118728611	C	T	19	42
BRCA	TCGA-AN-A041	TGFBI	SNP	Silent	5	135385250	C	T	27	39
BRCA	TCGA-AN-A041	DMGDH	SNP	Missense_Mutation	5	78325833	T	C	51	86
BRCA	TCGA-AN-A041	YKT6	SNP	Silent	7	44247013	C	T	31	23
BRCA	TCGA-AN-A041	STK3	SNP	Missense_Mutation	8	99719442	C	A	30	100
BRCA	TCGA-AN-A041	SHC3	SNP	Silent	9	91727508	T	G	54	56
BRCA	TCGA-AN-A049	PRRC2C	SNP	Missense_Mutation	1	171511272	G	A	37	85
BRCA	TCGA-AN-A049	TOR1AIP2	SNP	Missense_Mutation	1	179815877	T	G	63	53
BRCA	TCGA-AN-A049	CDC42BPA	SNP	Missense_Mutation	1	227288919	G	A	44	72
BRCA	TCGA-AN-A049	OR13G1	SNP	Missense_Mutation	1	247835571	C	T	27	59
BRCA	TCGA-AN-A049	GJB3	SNP	Missense_Mutation	1	35251060	G	A	38	12
BRCA	TCGA-AN-A049	NCDN	SNP	Missense_Mutation	1	36029024	T	G	50	85
BRCA	TCGA-AN-A049	SYDE2	SNP	Missense_Mutation	1	85656406	T	C	52	40
BRCA	TCGA-AN-A049	OGDHL	SNP	Missense_Mutation	10	50946283	G	T	43	75
BRCA	TCGA-AN-A049	TCN1	SNP	Missense_Mutation	11	59629105	C	T	19	52
BRCA	TCGA-AN-A049	FBXO21	DEL	Frame_Shift_Del	12	117612569	AGAGGATTGCAGTACTGGTCAATATATAC	-	11	89
BRCA	TCGA-AN-A049	KRT2	SNP	Silent	12	53042056	G	A	46	44
BRCA	TCGA-AN-A049	TENC1	SNP	Silent	12	53457540	C	T	31	47
BRCA	TCGA-AN-A049	MDM1	SNP	Missense_Mutation	12	68719294	C	A	32	73
BRCA	TCGA-AN-A049	SIPA1L1	SNP	Missense_Mutation	14	72055691	G	T	40	100
BRCA	TCGA-AN-A049	CSPG4	SNP	Silent	15	75982428	C	T	26	49
BRCA	TCGA-AN-A049	SEPT12	SNP	Missense_Mutation	16	4829718	G	A	39	62
BRCA	TCGA-AN-A049	SLFN12	SNP	Silent	17	33749142	G	A	33	49
BRCA	TCGA-AN-A049	KCNH6	SNP	Missense_Mutation	17	61613318	G	T	48	96
BRCA	TCGA-AN-A049	CD300E	SNP	Missense_Mutation	17	72619828	G	A	39	43
BRCA	TCGA-AN-A049	CCNT2	SNP	Splice_Site	2	135704036	G	A	44	100
BRCA	TCGA-AN-A049	DNPEP	DEL	Frame_Shift_Del	2	220249154	A	-	6	43
BRCA	TCGA-AN-A049	PFKL	SNP	Silent	21	45736395	C	T	31	47
BRCA	TCGA-AN-A049	CUL4B	SNP	Missense_Mutation	23	119678367	C	T	31	98
BRCA	TCGA-AN-A049	OCRL	SNP	Missense_Mutation	23	128692912	G	A	39	94
BRCA	TCGA-AN-A049	KLHL15	INS	Frame_Shift_Ins	23	24024161	-	T	44	96
BRCA	TCGA-AN-A049	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AN-A049	WWC1	SNP	Missense_Mutation	5	167881097	G	A	34	74
BRCA	TCGA-AN-A049	HK3	SNP	Silent	5	176315434	G	A	39	32
BRCA	TCGA-AN-A049	MAP3K1	DEL	Frame_Shift_Del	5	56178024	AGAT	-	7	71
BRCA	TCGA-AN-A049	TTC37	SNP	Silent	5	94858950	T	G	58	32
BRCA	TCGA-AN-A049	IRF4	SNP	Missense_Mutation	6	397138	G	A	37	90
BRCA	TCGA-AN-A049	COL12A1	SNP	Missense_Mutation	6	75884984	G	A	40	82
BRCA	TCGA-AN-A049	SLC12A9	SNP	Silent	7	100457800	G	C	48	48
BRCA	TCGA-AN-A049	HOXA5	SNP	Missense_Mutation	7	27182916	G	A	41	100
BRCA	TCGA-AN-A049	HEY1	SNP	Missense_Mutation	8	80677554	A	T	10	90
BRCA	TCGA-AN-A049	ZNF618	SNP	Missense_Mutation	9	116764297	G	A	48	89
BRCA	TCGA-AN-A049	BARHL1	SNP	Silent	9	135458232	C	T	27	44
BRCA	TCGA-AN-A04A	OLFML3	SNP	Silent	1	114523968	C	T	19	50
BRCA	TCGA-AN-A04A	LMNA	SNP	Silent	1	156100489	C	T	23	24
BRCA	TCGA-AN-A04A	CDC42BPA	SNP	Missense_Mutation	1	227182529	C	T	23	58
BRCA	TCGA-AN-A04A	GATA3	DEL	Frame_Shift_Del	10	8115907	CGCCCACG	-	19	100
BRCA	TCGA-AN-A04A	OR5R1	SNP	Missense_Mutation	11	56184810	G	A	42	75
BRCA	TCGA-AN-A04A	PRKRIR	SNP	Missense_Mutation	11	76062947	C	T	18	65
BRCA	TCGA-AN-A04A	LOC100286978	SNP	Nonsense_Mutation	14	60212423	T	A	61	68
BRCA	TCGA-AN-A04A	STARD9	SNP	Silent	15	42984870	C	T	32	52
BRCA	TCGA-AN-A04A	DOC2A	SNP	Silent	16	30020844	G	A	40	50
BRCA	TCGA-AN-A04A	KCNG4	SNP	Missense_Mutation	16	84270499	G	A	37	80
BRCA	TCGA-AN-A04A	FANCA	SNP	Missense_Mutation	16	89816220	G	A	39	42
BRCA	TCGA-AN-A04A	MYH4	SNP	Missense_Mutation	17	10355578	G	A	38	73
BRCA	TCGA-AN-A04A	CCDC102B	SNP	Missense_Mutation	18	66513554	C	T	27	61
BRCA	TCGA-AN-A04A	PSMD14	SNP	Silent	2	162175351	T	G	61	62
BRCA	TCGA-AN-A04A	ALK	SNP	Silent	2	29416321	G	A	40	50
BRCA	TCGA-AN-A04A	REG3G	SNP	Missense_Mutation	2	79255029	G	T	47	57
BRCA	TCGA-AN-A04A	TRABD2A	SNP	Nonsense_Mutation	2	85097825	G	A	39	72
BRCA	TCGA-AN-A04A	GGT1	SNP	Missense_Mutation	22	25019807	G	A	38	79
BRCA	TCGA-AN-A04A	NPTXR	SNP	Silent	22	39219199	C	T	22	74
BRCA	TCGA-AN-A04A	MKL1	SNP	Nonsense_Mutation	22	40825739	G	A	46	100
BRCA	TCGA-AN-A04A	MOV10L1	SNP	Missense_Mutation	22	50555645	G	A	37	88
BRCA	TCGA-AN-A04A	NDUFA1	SNP	Missense_Mutation	23	119005896	G	A	39	65
BRCA	TCGA-AN-A04A	ATRX	SNP	Missense_Mutation	23	76939543	A	T	4	86
BRCA	TCGA-AN-A04A	SEMA5B	SNP	Missense_Mutation	3	122629793	C	T	19	63
BRCA	TCGA-AN-A04A	PIK3CB	SNP	Missense_Mutation	3	138403480	G	A	35	79
BRCA	TCGA-AN-A04A	KIT	SNP	Missense_Mutation	4	55569972	C	T	27	53
BRCA	TCGA-AN-A04A	HEATR7B2	SNP	Silent	5	41005744	G	A	46	54
BRCA	TCGA-AN-A04A	HEATR7B2	SNP	Missense_Mutation	5	41015496	G	A	33	78
BRCA	TCGA-AN-A04A	HIST1H1C	DEL	In_Frame_Del	6	26056019	TTC	-	64	89
BRCA	TCGA-AN-A04A	SH3GL2	SNP	Missense_Mutation	9	17787384	C	T	25	100
BRCA	TCGA-AN-A04C	COL11A1	SNP	Silent	1	103474022	A	C	11	58
BRCA	TCGA-AN-A04C	HFE2	SNP	Silent	1	145415808	G	A	40	47
BRCA	TCGA-AN-A04C	GJA8	SNP	Missense_Mutation	1	147381239	C	T	23	52
BRCA	TCGA-AN-A04C	SETDB1	SNP	Missense_Mutation	1	150935080	G	A	37	62
BRCA	TCGA-AN-A04C	KPRP	SNP	Silent	1	152733639	C	G	23	26
BRCA	TCGA-AN-A04C	PLA2G2F	SNP	Missense_Mutation	1	20469992	G	A	40	43
BRCA	TCGA-AN-A04C	LRRC41	SNP	Missense_Mutation	1	46744688	G	T	42	67
BRCA	TCGA-AN-A04C	UPF2	SNP	Missense_Mutation	10	11978707	C	T	31	83
BRCA	TCGA-AN-A04C	ROBO4	SNP	Silent	11	124765468	G	A	38	47
BRCA	TCGA-AN-A04C	RCN1	SNP	Missense_Mutation	11	32125021	A	T	1	71
BRCA	TCGA-AN-A04C	MYO7A	SNP	Splice_site	11	76924905	G	A	41	99
BRCA	TCGA-AN-A04C	FBXO21	SNP	Silent	12	117624363	C	T	26	84
BRCA	TCGA-AN-A04C	TMEM132B	SNP	Missense_Mutation	12	125834766	C	A	30	85
BRCA	TCGA-AN-A04C	PUS1	SNP	Missense_Mutation	12	132426023	A	G	2	54
BRCA	TCGA-AN-A04C	MLL2	SNP	Missense_Mutation	12	49427612	G	A	39	81
BRCA	TCGA-AN-A04C	FMNL3	SNP	Missense_Mutation	12	50050614	C	G	32	64
BRCA	TCGA-AN-A04C	GLI1	SNP	Missense_Mutation	12	57861170	C	T	27	72
BRCA	TCGA-AN-A04C	CD4	SNP	Silent	12	6926435	G	A	39	44
BRCA	TCGA-AN-A04C	PCDH9	SNP	Nonsense_Mutation	13	67801018	G	A	39	63
BRCA	TCGA-AN-A04C	UGGT2	DEL	Frame_Shift_Del	13	96665616	A	-	5	88
BRCA	TCGA-AN-A04C	MTHFD1	SNP	Splice_Site	14	64879189	G	A	33	96
BRCA	TCGA-AN-A04C	VPS18	SNP	Missense_Mutation	15	41193184	A	G	16	92
BRCA	TCGA-AN-A04C	KAT8	SNP	Missense_Mutation	16	31131549	G	A	42	82
BRCA	TCGA-AN-A04C	GRIN2C	SNP	Missense_Mutation	17	72848644	G	C	44	83
BRCA	TCGA-AN-A04C	TP53	SNP	Missense_Mutation	17	7578394	T	C	51	89
BRCA	TCGA-AN-A04C	CCDC11	SNP	Missense_Mutation	18	47769434	C	T	19	48
BRCA	TCGA-AN-A04C	DCC	SNP	Missense_Mutation	18	50731687	C	A	21	91
BRCA	TCGA-AN-A04C	ARHGAP28	SNP	Missense_Mutation	18	6859846	G	A	38	56
BRCA	TCGA-AN-A04C	ZNF791	SNP	Silent	19	12739846	C	T	27	58
BRCA	TCGA-AN-A04C	GRIK5	SNP	Missense_Mutation	19	42558011	C	T	27	84
BRCA	TCGA-AN-A04C	RPL13A	SNP	Missense_Mutation	19	49993509	C	G	19	65
BRCA	TCGA-AN-A04C	DNAAF3	SNP	Missense_Mutation	19	55677931	C	T	28	59
BRCA	TCGA-AN-A04C	CNTNAP5	SNP	Missense_Mutation	2	125555732	C	T	30	66
BRCA	TCGA-AN-A04C	LRP1B	SNP	Silent	2	141762944	G	A	39	45
BRCA	TCGA-AN-A04C	REL	SNP	Missense_Mutation	2	61147756	G	A	33	75
BRCA	TCGA-AN-A04C	KCNB1	SNP	Missense_Mutation	20	47990079	T	C	64	68
BRCA	TCGA-AN-A04C	BCAS1	SNP	Missense_Mutation	20	52644991	T	G	56	33
BRCA	TCGA-AN-A04C	TRAPPC10	SNP	Splice_site	21	45502669	G	A	44	76
BRCA	TCGA-AN-A04C	DOCK11	SNP	Missense_Mutation	23	117742260	A	G	14	57
BRCA	TCGA-AN-A04C	GPC4	SNP	Silent	23	132458221	G	A	37	53
BRCA	TCGA-AN-A04C	KCND1	SNP	Missense_Mutation	23	48826431	A	C	9	73
BRCA	TCGA-AN-A04C	ARR3	SNP	Missense_Mutation	23	69501557	C	T	27	49
BRCA	TCGA-AN-A04C	PIK3CA	SNP	Missense_Mutation	3	178937498	C	G	32	99
BRCA	TCGA-AN-A04C	MAP3K13	SNP	Missense_Mutation	3	185146578	C	T	19	72
BRCA	TCGA-AN-A04C	CNTN4	SNP	Missense_Mutation	3	3076325	G	T	44	82
BRCA	TCGA-AN-A04C	NDST3	SNP	Silent	4	119176789	G	T	47	60
BRCA	TCGA-AN-A04C	POLR2B	SNP	Missense_Mutation	4	57852532	A	T	12	90
BRCA	TCGA-AN-A04C	TMEM175	SNP	Silent	4	947133	T	C	63	59
BRCA	TCGA-AN-A04C	PCDHB10	SNP	Silent	5	140573649	G	T	39	39
BRCA	TCGA-AN-A04C	PAPD7	SNP	Missense_Mutation	5	6739853	A	G	10	88
BRCA	TCGA-AN-A04C	ENPP1	SNP	Splice_Site	6	132201019	G	C	33	76
BRCA	TCGA-AN-A04C	ZNF292	SNP	Missense_Mutation	6	87965899	C	T	30	62
BRCA	TCGA-AN-A04C	GABRR1	SNP	Missense_Mutation	6	89907818	G	A	40	71
BRCA	TCGA-AN-A04C	TNPO3	SNP	Silent	7	128610253	G	A	43	50
BRCA	TCGA-AN-A04C	GIMAP1	SNP	Missense_Mutation	7	150417637	G	T	43	53
BRCA	TCGA-AN-A04C	PEG10	DEL	Frame_Shift_Del	7	94293223	TGCTTCG	-	55	66
BRCA	TCGA-AN-A04C	PNMA2	SNP	Silent	8	26365956	A	G	4	55
BRCA	TCGA-AN-A04C	TEX15	SNP	Missense_Mutation	8	30695203	T	A	52	49
BRCA	TCGA-AN-A04C	ALDOB	SNP	Missense_Mutation	9	104184143	G	A	33	65
BRCA	TCGA-AN-A04C	RNF20	SNP	Missense_Mutation	9	104314674	C	T	27	69
BRCA	TCGA-AN-A04D	PRAMEF22	SNP	Silent	1	13036693	A	G	2	55
BRCA	TCGA-AN-A04D	PRAMEF25	SNP	Silent	1	13141600	A	G	2	48
BRCA	TCGA-AN-A04D	RORC	SNP	Missense_Mutation	1	151787698	C	T	29	79
BRCA	TCGA-AN-A04D	RUSC1	SNP	Silent	1	155298046	C	G	21	59
BRCA	TCGA-AN-A04D	GON4L	SNP	Missense_Mutation	1	155744795	G	C	36	55
BRCA	TCGA-AN-A04D	FCRL5	SNP	Missense_Mutation	1	157512676	T	A	55	64
BRCA	TCGA-AN-A04D	NOS1AP	SNP	Missense_Mutation	1	162326813	T	C	54	51
BRCA	TCGA-AN-A04D	UCK2	SNP	Missense_Mutation	1	165865513	T	C	55	88
BRCA	TCGA-AN-A04D	F5	SNP	Missense_Mutation	1	169541502	C	G	29	53
BRCA	TCGA-AN-A04D	CROCC	SNP	Silent	1	17263261	G	A	46	64
BRCA	TCGA-AN-A04D	TDRD5	SNP	Silent	1	179659890	T	C	52	45
BRCA	TCGA-AN-A04D	IPO9	SNP	Silent	1	201798352	G	A	39	51
BRCA	TCGA-AN-A04D	SLC26A9	SNP	Missense_Mutation	1	205898368	G	T	48	57
BRCA	TCGA-AN-A04D	USH2A	SNP	Missense_Mutation	1	216221986	A	T	16	59
BRCA	TCGA-AN-A04D	EXO1	SNP	Missense_Mutation	1	242030258	T	G	52	45
BRCA	TCGA-AN-A04D	CEP170	SNP	Missense_Mutation	1	243354442	G	C	43	95
BRCA	TCGA-AN-A04D	PHACTR4	SNP	Missense_Mutation	1	28800394	T	G	62	53
BRCA	TCGA-AN-A04D	GLIS1	SNP	Silent	1	54059934	C	T	26	69
BRCA	TCGA-AN-A04D	C10orf2	SNP	Missense_Mutation	10	102748073	C	T	30	53
BRCA	TCGA-AN-A04D	TACC2	SNP	Silent	10	123842443	C	A	26	51
BRCA	TCGA-AN-A04D	ADAM12	SNP	Silent	10	127760205	C	T	17	55
BRCA	TCGA-AN-A04D	ANKRD30A	SNP	Silent	10	37430800	T	A	55	54
BRCA	TCGA-AN-A04D	SLC16A12	SNP	Missense_Mutation	10	91198842	T	C	56	92
BRCA	TCGA-AN-A04D	RRP12	SNP	Missense_Mutation	10	99126551	C	G	30	64
BRCA	TCGA-AN-A04D	OR10S1	SNP	Nonsense_Mutation	11	123847945	T	A	55	51
BRCA	TCGA-AN-A04D	OR10V1	SNP	Missense_Mutation	11	59480439	T	A	54	55
BRCA	TCGA-AN-A04D	GNPTAB	SNP	Missense_Mutation	12	102159023	G	C	41	86
BRCA	TCGA-AN-A04D	PRDM4	SNP	Silent	12	108134960	G	A	33	59
BRCA	TCGA-AN-A04D	DDX55	SNP	Missense_Mutation	12	124094567	C	G	18	71
BRCA	TCGA-AN-A04D	GRIN2B	SNP	Missense_Mutation	12	13768083	C	T	27	89
BRCA	TCGA-AN-A04D	C12orf40	SNP	Missense_Mutation	12	40076596	C	A	18	40
BRCA	TCGA-AN-A04D	COL4A2	SNP	Missense_Mutation	13	111155500	G	A	46	62
BRCA	TCGA-AN-A04D	C1QTNF9B	SNP	Silent	13	24465799	G	A	34	49
BRCA	TCGA-AN-A04D	C1QTNF9B-AS1	SNP	Missense_Mutation	13	24895535	C	T	28	48
BRCA	TCGA-AN-A04D	USPL1	SNP	Missense_Mutation	13	31221139	G	T	47	82
BRCA	TCGA-AN-A04D	CACNA1H	SNP	Silent	16	1265025	C	G	32	52
BRCA	TCGA-AN-A04D	GNPTG	SNP	Missense_Mutation	16	1412250	C	G	30	78
BRCA	TCGA-AN-A04D	ABCC12	SNP	Missense_Mutation	16	48180286	C	T	23	42
BRCA	TCGA-AN-A04D	KATNB1	SNP	Splice_Site	16	57775730	G	A	44	96
BRCA	TCGA-AN-A04D	RNF43	DEL	Frame_Shift_Del	17	56435586	GGGATCCCCTTTA	-	43	58
BRCA	TCGA-AN-A04D	ITGB4	SNP	Missense_Mutation	17	73738675	T	A	51	71
BRCA	TCGA-AN-A04D	ENPP7	SNP	Missense_Mutation	17	77705071	T	C	51	76
BRCA	TCGA-AN-A04D	DLGAP1	SNP	Missense_Mutation	18	3534227	T	G	54	93
BRCA	TCGA-AN-A04D	MAPK4	SNP	Missense_Mutation	18	48255592	G	T	44	94
BRCA	TCGA-AN-A04D	AKAP8	SNP	Missense_Mutation	19	15472955	G	C	44	69
BRCA	TCGA-AN-A04D	SUGP1	SNP	Nonsense_Mutation	19	19414553	G	C	48	82
BRCA	TCGA-AN-A04D	SUGP1	DEL	Frame_Shift_Del	19	19414555	A	-	15	61
BRCA	TCGA-AN-A04D	CCNE1	SNP	Silent	19	30313495	C	T	17	79
BRCA	TCGA-AN-A04D	SBSN	SNP	Missense_Mutation	19	36018958	C	T	22	63
BRCA	TCGA-AN-A04D	ZNF841	SNP	Nonsense_Mutation	19	52568485	T	A	63	64
BRCA	TCGA-AN-A04D	VN1R2	SNP	Missense_Mutation	19	53762388	A	G	15	30
BRCA	TCGA-AN-A04D	ENSG00000229292	SNP	Missense_Mutation	19	56284202	G	A	37	51
BRCA	TCGA-AN-A04D	CAPS	DEL	In_Frame_Del	19	5914711	GCG	-	34	49
BRCA	TCGA-AN-A04D	MUC16	SNP	Missense_Mutation	19	9065209	C	T	28	47
BRCA	TCGA-AN-A04D	MBD5	SNP	Silent	2	149247300	T	C	52	51
BRCA	TCGA-AN-A04D	TTN	SNP	Missense_Mutation	2	179576811	G	A	40	60
BRCA	TCGA-AN-A04D	TTN	SNP	Silent	2	179588692	G	C	33	59
BRCA	TCGA-AN-A04D	ATAD2B	SNP	Nonsense_Mutation	2	24046432	A	T	6	55
BRCA	TCGA-AN-A04D	FAM98A	SNP	Missense_Mutation	2	33810243	C	G	30	98
BRCA	TCGA-AN-A04D	TMEM131	SNP	Missense_Mutation	2	98428967	C	G	17	62
BRCA	TCGA-AN-A04D	SLC35C2	INS	In_Frame_Ins	20	44983581	-	GCA	51	57
BRCA	TCGA-AN-A04D	LSM14B	SNP	Missense_Mutation	20	60708435	G	C	39	67
BRCA	TCGA-AN-A04D	KRTAP24-1	DEL	In_Frame_Del	21	31655047	TGCTTCACCGTAGGA	-	59	39
BRCA	TCGA-AN-A04D	LCA5L	SNP	Missense_Mutation	21	40794925	C	A	30	84
BRCA	TCGA-AN-A04D	KRTAP10-11	SNP	Missense_Mutation	21	46066670	T	G	55	55
BRCA	TCGA-AN-A04D	TCN2	SNP	Missense_Mutation	22	31019054	C	A	17	61
BRCA	TCGA-AN-A04D	TCEAL5	SNP	Missense_Mutation	23	102528976	T	A	64	52
BRCA	TCGA-AN-A04D	IL1RAPL2	SNP	Silent	23	104961445	G	A	36	54
BRCA	TCGA-AN-A04D	VAMP7	SNP	Missense_Mutation	23	155169387	G	T	34	77
BRCA	TCGA-AN-A04D	UBA1	SNP	Silent	23	47070446	G	A	47	79
BRCA	TCGA-AN-A04D	MAGED2	SNP	Silent	23	54841815	C	T	31	36
BRCA	TCGA-AN-A04D	WDR52	SNP	Missense_Mutation	3	113146069	C	A	20	52
BRCA	TCGA-AN-A04D	ITGB5	SNP	Silent	3	124567323	C	G	17	54
BRCA	TCGA-AN-A04D	MYNN	SNP	Missense_Mutation	3	169500356	C	T	26	100
BRCA	TCGA-AN-A04D	PHC3	SNP	Missense_Mutation	3	169854406	G	C	34	71
BRCA	TCGA-AN-A04D	MFI2	SNP	Silent	3	196748288	C	A	21	59
BRCA	TCGA-AN-A04D	AZI2	SNP	Missense_Mutation	3	28365652	G	A	41	75
BRCA	TCGA-AN-A04D	COL7A1	SNP	Missense_Mutation	3	48608296	G	A	38	59
BRCA	TCGA-AN-A04D	C4orf17	SNP	Missense_Mutation	4	100443690	A	G	12	71
BRCA	TCGA-AN-A04D	LRBA	SNP	Missense_Mutation	4	151223890	C	T	19	98
BRCA	TCGA-AN-A04D	GABRA4	SNP	Silent	4	46973128	T	C	56	52
BRCA	TCGA-AN-A04D	ACOX3	SNP	Missense_Mutation	4	8416065	T	G	52	84
BRCA	TCGA-AN-A04D	SNCAIP	SNP	Missense_Mutation	5	121780331	G	T	39	86
BRCA	TCGA-AN-A04D	PCDHB2	SNP	Missense_Mutation	5	140474886	A	T	4	49
BRCA	TCGA-AN-A04D	MTMR12	DEL	In_Frame_Del	5	32274199	CTG	-	20	84
BRCA	TCGA-AN-A04D	KIAA0947	SNP	Silent	5	5464610	G	A	37	38
BRCA	TCGA-AN-A04D	ENSG00000213701	SNP	Missense_Mutation	5	96392778	C	T	20	66
BRCA	TCGA-AN-A04D	VNN2	SNP	Missense_Mutation	6	133077134	C	G	26	84
BRCA	TCGA-AN-A04D	TNXB	SNP	Silent	6	32011575	C	T	23	30
BRCA	TCGA-AN-A04D	UHRF1BP1	SNP	Missense_Mutation	6	34827338	C	T	26	69
BRCA	TCGA-AN-A04D	DEFB112	SNP	Missense_Mutation	6	50011348	A	T	4	47
BRCA	TCGA-AN-A04D	ARPC1A	SNP	Silent	7	98946502	G	T	37	28
BRCA	TCGA-AN-A04D	SLC30A8	SNP	Missense_Mutation	8	118169971	G	T	44	60
BRCA	TCGA-AN-A04D	KLHL38	SNP	Missense_Mutation	8	124664078	C	G	30	100
BRCA	TCGA-AN-A04D	SNTG1	DEL	Frame_Shift_Del	8	51449212	ACGTTGAATATTTATCTTCCTTTCAGGAC	-	14	28
BRCA	TCGA-AN-A0AJ	NUDT17	SNP	Missense_Mutation	1	145587481	C	T	23	56
BRCA	TCGA-AN-A0AJ	TPR	SNP	Silent	1	186303578	A	T	7	51
BRCA	TCGA-AN-A0AJ	URB2	SNP	Silent	1	229783409	C	G	30	49
BRCA	TCGA-AN-A0AJ	RYR2	SNP	Missense_Mutation	1	237837413	C	A	32	66
BRCA	TCGA-AN-A0AJ	FMN2	SNP	Missense_Mutation	1	240601396	C	T	21	100
BRCA	TCGA-AN-A0AJ	RGS7	SNP	Splice_Site	1	240990397	C	A	18	86
BRCA	TCGA-AN-A0AJ	KCNK18	SNP	Missense_Mutation	10	118969045	G	C	36	54
BRCA	TCGA-AN-A0AJ	MCMBP	SNP	Missense_Mutation	10	121602080	G	C	33	98
BRCA	TCGA-AN-A0AJ	FAM13C	SNP	Missense_Mutation	10	61112160	G	A	39	56
BRCA	TCGA-AN-A0AJ	ZMIZ1	SNP	Missense_Mutation	10	80961397	C	G	32	94
BRCA	TCGA-AN-A0AJ	CDHR1	SNP	Missense_Mutation	10	85956341	A	G	15	71
BRCA	TCGA-AN-A0AJ	ABCC8	SNP	Missense_Mutation	11	17464360	C	T	27	100
BRCA	TCGA-AN-A0AJ	CCDC34	SNP	Missense_Mutation	11	27384585	G	A	42	55
BRCA	TCGA-AN-A0AJ	OR5D16	SNP	Missense_Mutation	11	55607024	C	T	30	46
BRCA	TCGA-AN-A0AJ	CCDC83	DEL	In_Frame_Del	11	85593657	TGT	-	51	35
BRCA	TCGA-AN-A0AJ	RFX4	SNP	Missense_Mutation	12	107048049	C	T	31	63
BRCA	TCGA-AN-A0AJ	ACAD10	SNP	Missense_Mutation	12	112186135	C	T	31	63
BRCA	TCGA-AN-A0AJ	KSR2	SNP	Missense_Mutation	12	117922315	C	T	30	87
BRCA	TCGA-AN-A0AJ	ITPR2	SNP	Silent	12	26647218	C	T	20	81
BRCA	TCGA-AN-A0AJ	FAM186B	SNP	Missense_Mutation	12	49993820	C	T	18	44
BRCA	TCGA-AN-A0AJ	NR2C1	SNP	Missense_Mutation	12	95456304	G	C	33	57
BRCA	TCGA-AN-A0AJ	SERF2	SNP	Missense_Mutation	15	44085898	C	G	32	73
BRCA	TCGA-AN-A0AJ	PRTG	SNP	Missense_Mutation	15	55970187	C	A	26	97
BRCA	TCGA-AN-A0AJ	ZNF609	SNP	Missense_Mutation	15	64915059	C	T	26	98
BRCA	TCGA-AN-A0AJ	PEAK1	SNP	Silent	15	77425881	A	G	6	48
BRCA	TCGA-AN-A0AJ	ST8SIA2	SNP	Silent	15	92988112	C	T	19	59
BRCA	TCGA-AN-A0AJ	ACSM2B	SNP	Silent	16	20554293	C	T	28	50
BRCA	TCGA-AN-A0AJ	ATXN2L	SNP	Silent	16	28843677	C	T	21	55
BRCA	TCGA-AN-A0AJ	SEZ6L2	SNP	Missense_Mutation	16	29884898	C	G	24	91
BRCA	TCGA-AN-A0AJ	DNAH9	SNP	Missense_Mutation	17	11687759	C	A	26	100
BRCA	TCGA-AN-A0AJ	SCARF1	SNP	Missense_Mutation	17	1540034	C	A	24	49
BRCA	TCGA-AN-A0AJ	TTC19	DEL	In_Frame_Del	17	15929879	CTA	-	28	97
BRCA	TCGA-AN-A0AJ	IKZF3	SNP	Silent	17	37922577	C	T	23	22
BRCA	TCGA-AN-A0AJ	ANKFY1	SNP	Missense_Mutation	17	4085564	C	G	30	99
BRCA	TCGA-AN-A0AJ	MRPS7	SNP	Missense_Mutation	17	73261930	G	A	40	89
BRCA	TCGA-AN-A0AJ	TP53	DEL	Frame_Shift_Del	17	7579364	C	-	18	58
BRCA	TCGA-AN-A0AJ	DSEL	SNP	Missense_Mutation	18	65180116	T	G	52	92
BRCA	TCGA-AN-A0AJ	CABP5	SNP	Missense_Mutation	19	48542565	C	T	19	64
BRCA	TCGA-AN-A0AJ	MUC16	SNP	Silent	19	9061493	C	A	30	47
BRCA	TCGA-AN-A0AJ	IL1R2	SNP	Silent	2	102644698	G	A	40	47
BRCA	TCGA-AN-A0AJ	KCNJ3	SNP	Silent	2	155555500	C	T	32	61
BRCA	TCGA-AN-A0AJ	PMS1	SNP	Missense_Mutation	2	190742124	T	G	52	69
BRCA	TCGA-AN-A0AJ	COL6A3	SNP	Missense_Mutation	2	238280902	G	T	44	52
BRCA	TCGA-AN-A0AJ	EML4	SNP	Nonsense_Mutation	2	42472824	A	T	13	89
BRCA	TCGA-AN-A0AJ	PLEKHH2	SNP	Silent	2	43919673	A	G	4	58
BRCA	TCGA-AN-A0AJ	ALMS1	SNP	Silent	2	73646388	G	A	38	47
BRCA	TCGA-AN-A0AJ	CD93	SNP	Missense_Mutation	20	23065350	C	T	19	30
BRCA	TCGA-AN-A0AJ	PROCR	SNP	Missense_Mutation	20	33764038	C	A	32	65
BRCA	TCGA-AN-A0AJ	ANGPT4	SNP	Missense_Mutation	20	896809	C	A	25	57
BRCA	TCGA-AN-A0AJ	MCM3AP	SNP	Missense_Mutation	21	47703566	C	T	27	78
BRCA	TCGA-AN-A0AJ	FAM48B1	SNP	Missense_Mutation	23	24383411	G	T	33	48
BRCA	TCGA-AN-A0AJ	CYLC1	SNP	Missense_Mutation	23	83128429	G	T	46	38
BRCA	TCGA-AN-A0AJ	FLJ25363	SNP	Missense_Mutation	3	109129032	G	A	39	67
BRCA	TCGA-AN-A0AJ	DNAJC13	SNP	Missense_Mutation	3	132193880	G	C	33	100
BRCA	TCGA-AN-A0AJ	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AN-A0AJ	TTC14	SNP	Missense_Mutation	3	180327846	G	A	36	65
BRCA	TCGA-AN-A0AJ	HRG	SNP	Missense_Mutation	3	186383974	C	T	27	66
BRCA	TCGA-AN-A0AJ	RTP2	SNP	Missense_Mutation	3	187416666	C	T	23	72
BRCA	TCGA-AN-A0AJ	MYRIP	SNP	Splice_site	3	40231954	G	C	35	62
BRCA	TCGA-AN-A0AJ	ZNF445	SNP	Missense_Mutation	3	44496857	C	T	27	62
BRCA	TCGA-AN-A0AJ	OR5H2	SNP	Missense_Mutation	3	98002278	T	G	61	68
BRCA	TCGA-AN-A0AJ	HADH	SNP	Missense_Mutation	4	108948850	C	T	30	100
BRCA	TCGA-AN-A0AJ	CLCN3	SNP	Silent	4	170610225	C	T	23	48
BRCA	TCGA-AN-A0AJ	CDKN2AIP	SNP	Nonsense_Mutation	4	184367784	C	G	29	82
BRCA	TCGA-AN-A0AJ	CDKN2AIP	SNP	Missense_Mutation	4	184367856	C	T	29	68
BRCA	TCGA-AN-A0AJ	CDKN2AIP	SNP	Missense_Mutation	4	184367943	C	T	29	82
BRCA	TCGA-AN-A0AJ	CEP135	SNP	Missense_Mutation	4	56819315	G	C	33	99
BRCA	TCGA-AN-A0AJ	FRAS1	SNP	Silent	4	79391188	C	A	25	52
BRCA	TCGA-AN-A0AJ	SEC24A	DEL	Frame_Shift_Del	5	134041046	T	-	59	91
BRCA	TCGA-AN-A0AJ	PCDHB14	SNP	Nonsense_Mutation	5	140604653	G	T	41	54
BRCA	TCGA-AN-A0AJ	AFAP1L1	SNP	Missense_Mutation	5	148702185	G	A	38	80
BRCA	TCGA-AN-A0AJ	LARP1	DEL	Frame_Shift_Del	5	154169889	CT	-	20	54
BRCA	TCGA-AN-A0AJ	PDE4D	SNP	Missense_Mutation	5	58271593	G	A	40	97
BRCA	TCGA-AN-A0AJ	DSE	SNP	Silent	6	116756906	T	C	59	66
BRCA	TCGA-AN-A0AJ	THEMIS	SNP	Missense_Mutation	6	128222041	C	G	29	59
BRCA	TCGA-AN-A0AJ	ABCF1	SNP	Missense_Mutation	6	30558114	C	T	32	95
BRCA	TCGA-AN-A0AJ	LRRC73	SNP	Missense_Mutation	6	43476519	G	A	42	91
BRCA	TCGA-AN-A0AJ	ANKRD6	SNP	Missense_Mutation	6	90276733	G	A	38	84
BRCA	TCGA-AN-A0AJ	RELN	SNP	Missense_Mutation	7	103141338	A	C	11	86
BRCA	TCGA-AN-A0AJ	PPP1R3A	SNP	Silent	7	113519206	A	G	16	53
BRCA	TCGA-AN-A0AJ	ZNF498	DEL	Frame_Shift_Del	7	99227257	CA	-	21	67
BRCA	TCGA-AN-A0AJ	ZNF498	SNP	Missense_Mutation	7	99227260	C	G	24	74
BRCA	TCGA-AN-A0AJ	PXDNL	SNP	Nonsense_Mutation	8	52370199	G	A	37	65
BRCA	TCGA-AN-A0AJ	RAD54B	SNP	Missense_Mutation	8	95423537	G	A	37	49
BRCA	TCGA-AN-A0AJ	CCNE2	SNP	Missense_Mutation	8	95906439	C	T	31	79
BRCA	TCGA-AN-A0AJ	PAPPA	SNP	Missense_Mutation	9	119144714	G	A	37	100
BRCA	TCGA-AN-A0AJ	NEK6	SNP	Silent	9	127083782	C	T	31	46
BRCA	TCGA-AN-A0AJ	TSC1	SNP	Missense_Mutation	9	135771828	G	A	37	84
BRCA	TCGA-AN-A0AJ	CACNA1B	SNP	Silent	9	140953542	A	T	6	28
BRCA	TCGA-AN-A0AJ	FREM1	SNP	Missense_Mutation	9	14824844	C	A	22	56
BRCA	TCGA-AN-A0AJ	TOPORS	SNP	Missense_Mutation	9	32544087	C	G	29	56
BRCA	TCGA-AN-A0AL	MIIP	SNP	Silent	1	12081867	G	A	46	50
BRCA	TCGA-AN-A0AL	TCHH	SNP	Missense_Mutation	1	152084837	G	T	34	69
BRCA	TCGA-AN-A0AL	HRNR	SNP	Nonsense_Mutation	1	152185557	G	A	45	37
BRCA	TCGA-AN-A0AL	GPA33	SNP	Missense_Mutation	1	167042712	T	C	62	34
BRCA	TCGA-AN-A0AL	SELE	SNP	Missense_Mutation	1	169702097	G	C	41	80
BRCA	TCGA-AN-A0AL	NCF2	SNP	Missense_Mutation	1	183556064	A	C	3	80
BRCA	TCGA-AN-A0AL	RGS1	SNP	Missense_Mutation	1	192548335	T	G	63	51
BRCA	TCGA-AN-A0AL	KCNT2	SNP	Nonsense_Mutation	1	196227573	C	A	32	96
BRCA	TCGA-AN-A0AL	USP1	SNP	Missense_Mutation	1	62910521	A	G	1	63
BRCA	TCGA-AN-A0AL	HSPA12A	SNP	Splice_Site	10	118439273	C	T	24	99
BRCA	TCGA-AN-A0AL	MYPN	DEL	Frame_Shift_Del	10	69966541	CAACAGGGTATGCCTGCCTT	-	17	86
BRCA	TCGA-AN-A0AL	DNA2	SNP	Missense_Mutation	10	70231738	C	T	18	43
BRCA	TCGA-AN-A0AL	OR52K2	SNP	Missense_Mutation	11	4471319	C	G	32	52
BRCA	TCGA-AN-A0AL	OR4X1	SNP	Silent	11	48286093	C	T	20	49
BRCA	TCGA-AN-A0AL	SF1	SNP	Missense_Mutation	11	64536769	G	C	44	60
BRCA	TCGA-AN-A0AL	SNX32	SNP	Missense_Mutation	11	65617722	G	C	33	52
BRCA	TCGA-AN-A0AL	PACS1	SNP	Missense_Mutation	11	65998376	A	T	7	73
BRCA	TCGA-AN-A0AL	FAT3	SNP	Missense_Mutation	11	92623767	C	T	19	66
BRCA	TCGA-AN-A0AL	KIAA1551	SNP	Nonsense_Mutation	12	32137221	C	G	29	69
BRCA	TCGA-AN-A0AL	TROAP	SNP	Missense_Mutation	12	49717812	C	T	26	53
BRCA	TCGA-AN-A0AL	XPOT	SNP	Missense_Mutation	12	64815088	G	C	47	85
BRCA	TCGA-AN-A0AL	USPL1	DEL	Splice_site	13	31216765	GTGATATGGAAAGCCCT	-	44	82
BRCA	TCGA-AN-A0AL	BAZ1A	SNP	Missense_Mutation	14	35243682	C	G	29	73
BRCA	TCGA-AN-A0AL	PLEKHG3	SNP	Missense_Mutation	14	65207860	A	G	11	61
BRCA	TCGA-AN-A0AL	NRXN3	SNP	Nonsense_Mutation	14	79423678	T	G	61	93
BRCA	TCGA-AN-A0AL	ASB2	SNP	Silent	14	94420823	C	T	23	52
BRCA	TCGA-AN-A0AL	SERPINA11	DEL	In_Frame_Del	14	94914994	GCTGATGCCTGGGGGGTTGAGGCCCCT	-	34	51
BRCA	TCGA-AN-A0AL	ASB7	SNP	Missense_Mutation	15	101169774	A	G	4	89
BRCA	TCGA-AN-A0AL	MAP1A	SNP	Missense_Mutation	15	43813802	C	A	21	99
BRCA	TCGA-AN-A0AL	HERC1	SNP	Missense_Mutation	15	64050494	A	C	5	52
BRCA	TCGA-AN-A0AL	TRPV2	SNP	Missense_Mutation	17	16326990	C	A	26	56
BRCA	TCGA-AN-A0AL	CCDC144A	SNP	Missense_Mutation	17	16638380	C	G	17	67
BRCA	TCGA-AN-A0AL	TSR1	SNP	Missense_Mutation	17	2239717	G	T	38	84
BRCA	TCGA-AN-A0AL	NF1	DEL	In_Frame_Del	17	29496956	ATA	-	12	75
BRCA	TCGA-AN-A0AL	NF1	DEL	Frame_Shift_Del	17	29496963	AT	-	4	62
BRCA	TCGA-AN-A0AL	WSCD1	SNP	Missense_Mutation	17	6023829	G	C	43	93
BRCA	TCGA-AN-A0AL	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-AN-A0AL	CCDC102B	SNP	Silent	18	66721311	G	A	47	49
BRCA	TCGA-AN-A0AL	ZNF224	SNP	Silent	19	44611903	C	T	18	50
BRCA	TCGA-AN-A0AL	KIR3DL2	SNP	Missense_Mutation	19	55363521	C	T	32	60
BRCA	TCGA-AN-A0AL	NLRP11	SNP	Missense_Mutation	19	56320649	T	C	61	36
BRCA	TCGA-AN-A0AL	ACTL9	SNP	Missense_Mutation	19	8808096	G	T	42	67
BRCA	TCGA-AN-A0AL	TTN	SNP	Missense_Mutation	2	179640141	C	A	21	100
BRCA	TCGA-AN-A0AL	ALS2CR11	SNP	Missense_Mutation	2	202410298	G	T	35	51
BRCA	TCGA-AN-A0AL	CYP26B1	SNP	Missense_Mutation	2	72359509	G	C	42	70
BRCA	TCGA-AN-A0AL	BPIFB4	SNP	Missense_Mutation	20	31685561	G	A	33	77
BRCA	TCGA-AN-A0AL	RBL1	SNP	Silent	20	35651110	T	C	61	44
BRCA	TCGA-AN-A0AL	FAM65C	SNP	Missense_Mutation	20	49221293	G	T	34	53
BRCA	TCGA-AN-A0AL	MX2	DEL	Frame_Shift_Del	21	42780107	CTCACTCAGGCGCGACA	-	28	75
BRCA	TCGA-AN-A0AL	RFPL3	SNP	Missense_Mutation	22	32756346	G	A	37	47
BRCA	TCGA-AN-A0AL	RGAG1	SNP	Missense_Mutation	23	109697417	C	A	32	69
BRCA	TCGA-AN-A0AL	CFP	SNP	Missense_Mutation	23	47485756	C	T	23	75
BRCA	TCGA-AN-A0AL	MAGEE1	SNP	Missense_Mutation	23	75648610	T	C	50	48
BRCA	TCGA-AN-A0AL	ABI3BP	DEL	Frame_Shift_Del	3	100497193	CTGGGTGGCAAGGGTGGGCGGCGAGTCC	-	32	55
BRCA	TCGA-AN-A0AL	ABHD14A-ACY1	DEL	Frame_Shift_Del	3	52023054	C	-	26	72
BRCA	TCGA-AN-A0AL	NDNF	SNP	Missense_Mutation	4	121958353	G	A	35	75
BRCA	TCGA-AN-A0AL	SLIT2	SNP	Missense_Mutation	4	20598070	T	C	58	91
BRCA	TCGA-AN-A0AL	AFF4	SNP	Silent	5	132228739	C	T	28	57
BRCA	TCGA-AN-A0AL	PCDHAC1	DEL	Frame_Shift_Del	5	140306692	G	-	34	58
BRCA	TCGA-AN-A0AL	PCDHGB4	SNP	Nonsense_Mutation	5	140768682	G	T	37	86
BRCA	TCGA-AN-A0AL	ITK	SNP	Silent	5	156635917	G	A	35	59
BRCA	TCGA-AN-A0AL	CARD6	SNP	Missense_Mutation	5	40843565	A	G	11	55
BRCA	TCGA-AN-A0AL	AKD1	SNP	Splice_site	6	109827530	C	G	24	94
BRCA	TCGA-AN-A0AL	PTCHD4	SNP	Silent	6	47847116	T	C	54	49
BRCA	TCGA-AN-A0AL	MCM3	SNP	Missense_Mutation	6	52129521	G	T	46	53
BRCA	TCGA-AN-A0AL	KIAA1586	SNP	Missense_Mutation	6	56919137	A	C	8	56
BRCA	TCGA-AN-A0AL	COL19A1	SNP	Missense_Mutation	6	70637830	A	T	11	90
BRCA	TCGA-AN-A0AL	PTPRN2	SNP	Missense_Mutation	7	157370811	C	T	19	100
BRCA	TCGA-AN-A0AL	ENSG00000235517	SNP	Missense_Mutation	8	125877563	T	C	64	37
BRCA	TCGA-AN-A0AL	FZD3	SNP	Missense_Mutation	8	28409124	C	T	20	78
BRCA	TCGA-AN-A0AL	ALG2	SNP	Missense_Mutation	9	101980329	G	A	44	99
BRCA	TCGA-AN-A0AL	ORM1	DEL	Frame_Shift_Del	9	117085806	CCTGCATGCG	-	30	49
BRCA	TCGA-AN-A0AL	GOLGA1	SNP	Missense_Mutation	9	127700866	C	G	30	94
BRCA	TCGA-AN-A0AL	ODF2	SNP	Missense_Mutation	9	131246284	A	G	7	70
BRCA	TCGA-AN-A0AM	TNR	SNP	Missense_Mutation	1	175348868	C	T	31	95
BRCA	TCGA-AN-A0AM	RBBP5	SNP	Nonsense_Mutation	1	205069184	C	T	21	100
BRCA	TCGA-AN-A0AM	NEBL	SNP	Missense_Mutation	10	21186081	T	C	53	50
BRCA	TCGA-AN-A0AM	ANKRD26	SNP	Silent	10	27326932	A	G	8	53
BRCA	TCGA-AN-A0AM	GATA3	INS	Frame_Shift_Ins	10	8111507	-	G	51	47
BRCA	TCGA-AN-A0AM	DSCAML1	SNP	Missense_Mutation	11	117374631	C	A	26	96
BRCA	TCGA-AN-A0AM	CBL	SNP	Silent	11	119103160	G	T	47	78
BRCA	TCGA-AN-A0AM	PRDM10	SNP	Splice_site	11	129827805	C	A	18	98
BRCA	TCGA-AN-A0AM	OR52K1	SNP	Silent	11	4510538	G	A	39	20
BRCA	TCGA-AN-A0AM	KIF21A	SNP	Silent	12	39764027	T	C	50	55
BRCA	TCGA-AN-A0AM	MYO1A	SNP	Nonsense_Mutation	12	57431753	G	A	38	67
BRCA	TCGA-AN-A0AM	TBK1	SNP	Silent	12	64878170	C	G	32	48
BRCA	TCGA-AN-A0AM	CATSPERB	SNP	Missense_Mutation	14	92047238	C	G	32	39
BRCA	TCGA-AN-A0AM	TC2N	SNP	Silent	14	92249447	A	T	3	50
BRCA	TCGA-AN-A0AM	PPIB	INS	Splice_Site	15	64454237	-	A	61	61
BRCA	TCGA-AN-A0AM	RASGRF1	SNP	Missense_Mutation	15	79298697	G	A	39	92
BRCA	TCGA-AN-A0AM	FSD2	SNP	Missense_Mutation	15	83455730	C	A	26	70
BRCA	TCGA-AN-A0AM	IGF1R	SNP	Missense_Mutation	15	99440131	G	T	43	100
BRCA	TCGA-AN-A0AM	TEKT5	SNP	Missense_Mutation	16	10783833	A	G	5	85
BRCA	TCGA-AN-A0AM	TSR1	SNP	Missense_Mutation	17	2235542	C	G	30	64
BRCA	TCGA-AN-A0AM	RNF135	SNP	Missense_Mutation	17	29325889	G	T	36	53
BRCA	TCGA-AN-A0AM	KIF2B	SNP	Missense_Mutation	17	51901125	T	C	60	89
BRCA	TCGA-AN-A0AM	FAM20A	SNP	Missense_Mutation	17	66533795	T	G	56	45
BRCA	TCGA-AN-A0AM	CYP4F12	SNP	Missense_Mutation	19	15807003	C	T	21	73
BRCA	TCGA-AN-A0AM	CYP4F12	SNP	Missense_Mutation	19	15807308	C	G	32	64
BRCA	TCGA-AN-A0AM	CYP4F12	SNP	Missense_Mutation	19	15807835	C	G	29	51
BRCA	TCGA-AN-A0AM	ZNF724P	DEL	Frame_Shift_Del	19	23406636	C	-	29	44
BRCA	TCGA-AN-A0AM	CYP2A6	SNP	Missense_Mutation	19	41351269	T	G	58	82
BRCA	TCGA-AN-A0AM	SIGLEC8	SNP	Missense_Mutation	19	51960729	C	T	27	45
BRCA	TCGA-AN-A0AM	FUT3	SNP	Missense_Mutation	19	5844460	G	A	38	66
BRCA	TCGA-AN-A0AM	TTC7A	SNP	Missense_Mutation	2	47256405	C	T	19	61
BRCA	TCGA-AN-A0AM	SSTR4	SNP	Silent	20	23016933	C	T	28	77
BRCA	TCGA-AN-A0AM	OGFR	SNP	Silent	20	61444629	A	G	7	34
BRCA	TCGA-AN-A0AM	RNF113A	SNP	Missense_Mutation	23	119004955	T	C	58	86
BRCA	TCGA-AN-A0AM	LOC644717	SNP	Missense_Mutation	23	134814919	G	T	41	53
BRCA	TCGA-AN-A0AM	CTPS2	SNP	Missense_Mutation	23	16685675	C	T	29	52
BRCA	TCGA-AN-A0AM	EPHB1	SNP	Missense_Mutation	3	134644715	C	T	27	85
BRCA	TCGA-AN-A0AM	PIK3CB	SNP	Missense_Mutation	3	138453537	A	C	16	82
BRCA	TCGA-AN-A0AM	NR2C2	SNP	Missense_Mutation	3	15064743	G	T	39	86
BRCA	TCGA-AN-A0AM	MUC4	SNP	Silent	3	195511668	G	A	40	54
BRCA	TCGA-AN-A0AM	DNAH1	SNP	Silent	3	52404636	G	A	33	65
BRCA	TCGA-AN-A0AM	ROBO2	SNP	Missense_Mutation	3	77684051	G	A	37	80
BRCA	TCGA-AN-A0AM	NDST4	SNP	Silent	4	115997884	T	G	50	46
BRCA	TCGA-AN-A0AM	OTUD4	SNP	Silent	4	146076764	G	C	33	51
BRCA	TCGA-AN-A0AM	CCDC69	SNP	Missense_Mutation	5	150565026	C	T	19	61
BRCA	TCGA-AN-A0AM	ADAMTS16	SNP	Missense_Mutation	5	5232546	G	T	44	97
BRCA	TCGA-AN-A0AM	SCAF8	SNP	Missense_Mutation	6	155154411	A	T	12	80
BRCA	TCGA-AN-A0AM	ZNF76	SNP	Silent	6	35260506	C	T	27	48
BRCA	TCGA-AN-A0AM	MUC17	SNP	Missense_Mutation	7	100676850	C	T	24	54
BRCA	TCGA-AN-A0AM	PLOD3	SNP	Missense_Mutation	7	100855927	G	A	39	61
BRCA	TCGA-AN-A0AM	SLC35B4	SNP	Missense_Mutation	7	133986554	C	T	20	53
BRCA	TCGA-AN-A0AM	FBXL18	SNP	Nonsense_Mutation	7	5540158	G	T	45	58
BRCA	TCGA-AN-A0AM	RUNX1T1	SNP	Missense_Mutation	8	93029469	A	G	4	90
BRCA	TCGA-AN-A0AM	OR1L6	SNP	Missense_Mutation	9	125512715	C	A	21	57
BRCA	TCGA-AN-A0AR	LOC728989	SNP	Silent	1	146494519	G	A	48	48
BRCA	TCGA-AN-A0AR	PYGO2	SNP	Missense_Mutation	1	154931383	C	T	27	76
BRCA	TCGA-AN-A0AR	IGSF9	SNP	Silent	1	159906244	G	A	42	59
BRCA	TCGA-AN-A0AR	IGSF8	SNP	Missense_Mutation	1	160062779	C	T	22	59
BRCA	TCGA-AN-A0AR	DUSP27	SNP	Missense_Mutation	1	167095371	G	T	42	83
BRCA	TCGA-AN-A0AR	CFHR4	SNP	Missense_Mutation	1	196879568	C	A	20	42
BRCA	TCGA-AN-A0AR	NLRP3	SNP	Missense_Mutation	1	247608079	C	A	32	52
BRCA	TCGA-AN-A0AR	OSCP1	SNP	Missense_Mutation	1	36883811	C	G	29	70
BRCA	TCGA-AN-A0AR	MYCL1	SNP	Missense_Mutation	1	40363211	T	G	59	70
BRCA	TCGA-AN-A0AR	PRKAA2	DEL	In_Frame_Del	1	57161777	CTGATGCATATGCTG	-	24	70
BRCA	TCGA-AN-A0AR	FUBP1	SNP	Missense_Mutation	1	78414864	C	T	25	99
BRCA	TCGA-AN-A0AR	ELTD1	SNP	Silent	1	79383583	A	G	12	52
BRCA	TCGA-AN-A0AR	HPSE2	SNP	Silent	10	100904059	A	G	11	56
BRCA	TCGA-AN-A0AR	ENTPD7	SNP	Missense_Mutation	10	101451204	G	T	41	92
BRCA	TCGA-AN-A0AR	PSD	DEL	Splice_Site	10	104165080	CCCCCCGCAACTCGGCCACATACTCTT	-	26	46
BRCA	TCGA-AN-A0AR	WBP1L	SNP	Missense_Mutation	10	104557756	G	A	41	91
BRCA	TCGA-AN-A0AR	TRUB1	SNP	Missense_Mutation	10	116710862	T	A	52	73
BRCA	TCGA-AN-A0AR	MAP3K8	SNP	Missense_Mutation	10	30728142	C	G	30	86
BRCA	TCGA-AN-A0AR	ZNF487P	SNP	Missense_Mutation	10	43977890	G	A	41	49
BRCA	TCGA-AN-A0AR	FBXO18	SNP	Silent	10	5951233	C	A	30	40
BRCA	TCGA-AN-A0AR	CCAR1	SNP	Missense_Mutation	10	70531055	G	C	35	62
BRCA	TCGA-AN-A0AR	ADK	SNP	Nonsense_Mutation	10	75960544	G	T	43	97
BRCA	TCGA-AN-A0AR	TAF3	SNP	Silent	10	8055756	G	A	41	43
BRCA	TCGA-AN-A0AR	CPEB3	SNP	Missense_Mutation	10	93952303	C	G	24	99
BRCA	TCGA-AN-A0AR	DYNC2H1	SNP	Missense_Mutation	11	103014002	G	T	41	96
BRCA	TCGA-AN-A0AR	SLC6A5	SNP	Missense_Mutation	11	20652251	T	G	58	92
BRCA	TCGA-AN-A0AR	ANO5	DEL	Frame_Shift_Del	11	22294380	CC	-	30	100
BRCA	TCGA-AN-A0AR	OR52A1	SNP	Missense_Mutation	11	5173461	G	T	34	53
BRCA	TCGA-AN-A0AR	FAM111A	DEL	In_Frame_Del	11	58919851	ATG	-	4	46
BRCA	TCGA-AN-A0AR	OR4D6	SNP	Missense_Mutation	11	59224890	G	T	47	54
BRCA	TCGA-AN-A0AR	SLC22A6	SNP	Missense_Mutation	11	62747289	T	A	60	66
BRCA	TCGA-AN-A0AR	NPAS4	SNP	Nonsense_Mutation	11	66192385	C	A	29	75
BRCA	TCGA-AN-A0AR	GRM5	SNP	Missense_Mutation	11	88780577	G	A	42	100
BRCA	TCGA-AN-A0AR	HEPHL1	SNP	Missense_Mutation	11	93839282	A	G	11	78
BRCA	TCGA-AN-A0AR	OAS2	SNP	Silent	12	113440772	G	C	47	35
BRCA	TCGA-AN-A0AR	KDM2B	SNP	Silent	12	121878934	G	T	37	50
BRCA	TCGA-AN-A0AR	TMEM132B	SNP	Silent	12	125834179	C	G	21	77
BRCA	TCGA-AN-A0AR	GALNT9	SNP	Silent	12	132685675	G	A	40	57
BRCA	TCGA-AN-A0AR	PLCZ1	SNP	Silent	12	18852835	G	C	40	81
BRCA	TCGA-AN-A0AR	PDE3A	SNP	Silent	12	20807084	G	A	35	53
BRCA	TCGA-AN-A0AR	ABCC9	DEL	Frame_Shift_Del	12	21981950	GTATCCGTCA	-	48	96
BRCA	TCGA-AN-A0AR	ABCC9	SNP	Missense_Mutation	12	22028614	G	C	41	95
BRCA	TCGA-AN-A0AR	KDM5A	SNP	Missense_Mutation	12	493214	G	T	33	66
BRCA	TCGA-AN-A0AR	TROAP	SNP	Missense_Mutation	12	49717740	G	T	36	53
BRCA	TCGA-AN-A0AR	SP1	SNP	Missense_Mutation	12	53776045	A	G	4	86
BRCA	TCGA-AN-A0AR	B4GALNT3	SNP	Missense_Mutation	12	661326	A	T	10	74
BRCA	TCGA-AN-A0AR	TRHDE	SNP	Silent	12	73014965	T	C	62	59
BRCA	TCGA-AN-A0AR	CD163L1	SNP	Nonsense_Mutation	12	7556211	G	T	45	71
BRCA	TCGA-AN-A0AR	GDF3	SNP	Missense_Mutation	12	7842748	C	T	23	50
BRCA	TCGA-AN-A0AR	TNFRSF19	SNP	Missense_Mutation	13	24243187	A	T	12	34
BRCA	TCGA-AN-A0AR	OR4E2	SNP	Missense_Mutation	14	22133652	C	T	27	97
BRCA	TCGA-AN-A0AR	RABGGTA	SNP	Missense_Mutation	14	24736910	T	G	63	84
BRCA	TCGA-AN-A0AR	BMP4	SNP	Missense_Mutation	14	54417573	T	A	60	51
BRCA	TCGA-AN-A0AR	MLH3	DEL	In_Frame_Del	14	75514596	CTAGATTCTTTTTTTTTCTCTTTCTCTGTCTGAGCA	-	28	56
BRCA	TCGA-AN-A0AR	CXADRP2	SNP	Missense_Mutation	15	22016434	C	A	20	60
BRCA	TCGA-AN-A0AR	MAP1A	SNP	Missense_Mutation	15	43818728	G	C	33	50
BRCA	TCGA-AN-A0AR	ABCC1	SNP	Missense_Mutation	16	16146590	C	G	22	82
BRCA	TCGA-AN-A0AR	C17orf53	SNP	Missense_Mutation	17	42225520	G	C	36	59
BRCA	TCGA-AN-A0AR	ABCA9	SNP	Silent	17	67039671	C	T	19	50
BRCA	TCGA-AN-A0AR	ACADVL	SNP	Missense_Mutation	17	7127320	C	T	31	72
BRCA	TCGA-AN-A0AR	TP53	DEL	Frame_Shift_Del	17	7578416	CCTC	-	18	84
BRCA	TCGA-AN-A0AR	USP36	SNP	Silent	17	76795831	A	T	7	40
BRCA	TCGA-AN-A0AR	EPB41L3	SNP	Missense_Mutation	18	5406867	T	C	52	70
BRCA	TCGA-AN-A0AR	NR2C2AP	SNP	Missense_Mutation	19	19312778	G	A	39	72
BRCA	TCGA-AN-A0AR	QPCTL	SNP	Missense_Mutation	19	46196806	G	C	36	69
BRCA	TCGA-AN-A0AR	KIR2DS4	SNP	Silent	19	55350924	A	G	6	51
BRCA	TCGA-AN-A0AR	FUT3	SNP	Missense_Mutation	19	5844141	G	A	40	41
BRCA	TCGA-AN-A0AR	NCKAP5	SNP	Missense_Mutation	2	133539679	T	A	49	44
BRCA	TCGA-AN-A0AR	FASTKD1	SNP	Missense_Mutation	2	170393757	G	C	40	91
BRCA	TCGA-AN-A0AR	PPIG	SNP	Nonsense_Mutation	2	170487451	C	T	23	66
BRCA	TCGA-AN-A0AR	ITGAV	SNP	Splice_Site	2	187540546	G	T	33	85
BRCA	TCGA-AN-A0AR	TET3	SNP	Missense_Mutation	2	74275189	G	C	35	55
BRCA	TCGA-AN-A0AR	RGPD1	SNP	Missense_Mutation	2	87211939	C	G	32	80
BRCA	TCGA-AN-A0AR	RGPD2	SNP	Missense_Mutation	2	88084626	G	C	33	80
BRCA	TCGA-AN-A0AR	LPIN3	SNP	Missense_Mutation	20	39980756	G	A	35	50
BRCA	TCGA-AN-A0AR	TSHZ2	SNP	Missense_Mutation	20	51872574	G	T	36	87
BRCA	TCGA-AN-A0AR	SLC7A4	SNP	Silent	22	21385205	C	A	21	51
BRCA	TCGA-AN-A0AR	RNF185	SNP	Missense_Mutation	22	31591482	G	T	44	96
BRCA	TCGA-AN-A0AR	TXN2	SNP	Silent	22	36872855	C	G	21	58
BRCA	TCGA-AN-A0AR	SSTR3	SNP	Silent	22	37603630	C	A	26	54
BRCA	TCGA-AN-A0AR	SOX10	SNP	Silent	22	38369664	G	A	42	68
BRCA	TCGA-AN-A0AR	OGT	DEL	In_Frame_Del	23	70783063	TCTTGATAG	-	62	57
BRCA	TCGA-AN-A0AR	KNG1	DEL	Frame_Shift_Del	3	186460074	AAATG	-	5	72
BRCA	TCGA-AN-A0AR	LEPREL1	SNP	Missense_Mutation	3	189711948	C	A	22	96
BRCA	TCGA-AN-A0AR	CPN2	SNP	Missense_Mutation	3	194062839	A	T	7	77
BRCA	TCGA-AN-A0AR	XIRP1	SNP	Missense_Mutation	3	39228482	T	G	64	81
BRCA	TCGA-AN-A0AR	IL17RB	SNP	Missense_Mutation	3	53892827	C	T	22	48
BRCA	TCGA-AN-A0AR	NR3C2	SNP	Missense_Mutation	4	149075954	C	G	32	76
BRCA	TCGA-AN-A0AR	TRIM60	SNP	Silent	4	165961479	G	A	41	56
BRCA	TCGA-AN-A0AR	SEL1L3	SNP	Missense_Mutation	4	25769216	A	G	16	81
BRCA	TCGA-AN-A0AR	RFC1	SNP	Missense_Mutation	4	39304714	C	A	26	99
BRCA	TCGA-AN-A0AR	MYO10	SNP	Silent	5	16671552	C	T	20	50
BRCA	TCGA-AN-A0AR	GZMA	SNP	Missense_Mutation	5	54398559	T	C	62	61
BRCA	TCGA-AN-A0AR	TRIM23	SNP	Missense_Mutation	5	64913932	C	G	20	94
BRCA	TCGA-AN-A0AR	FASTKD3	SNP	Missense_Mutation	5	7867856	T	A	62	83
BRCA	TCGA-AN-A0AR	GPR98	SNP	Missense_Mutation	5	89949195	C	A	20	63
BRCA	TCGA-AN-A0AR	SERINC1	SNP	Splice_Site	6	122792954	T	C	52	72
BRCA	TCGA-AN-A0AR	MAP3K5	SNP	Missense_Mutation	6	137019731	C	G	29	62
BRCA	TCGA-AN-A0AR	STXBP5	SNP	Splice_site	6	147655358	G	C	47	96
BRCA	TCGA-AN-A0AR	SYNE1	SNP	Splice_Site	6	152683459	C	G	28	97
BRCA	TCGA-AN-A0AR	PRRT1	SNP	Missense_Mutation	6	32119594	T	C	62	68
BRCA	TCGA-AN-A0AR	TRERF1	SNP	Missense_Mutation	6	42231282	G	T	42	73
BRCA	TCGA-AN-A0AR	HTR1E	DEL	Frame_Shift_Del	6	87725628	TATCCCCTTGACTTTGATACTGATTCTC	-	49	55
BRCA	TCGA-AN-A0AR	UBE2J1	SNP	Splice_Site	6	90045151	C	G	32	96
BRCA	TCGA-AN-A0AR	PPP1R3A	SNP	Missense_Mutation	7	113519707	T	A	56	55
BRCA	TCGA-AN-A0AR	PPP1R3A	SNP	Missense_Mutation	7	113520011	G	A	45	64
BRCA	TCGA-AN-A0AR	PTPRZ1	SNP	Missense_Mutation	7	121659211	G	T	44	94
BRCA	TCGA-AN-A0AR	SCRN1	SNP	Missense_Mutation	7	30008626	C	T	21	70
BRCA	TCGA-AN-A0AR	BMPER	SNP	Missense_Mutation	7	34097695	A	C	5	87
BRCA	TCGA-AN-A0AR	ZNF716	SNP	Nonsense_Mutation	7	57529139	C	A	17	55
BRCA	TCGA-AN-A0AR	WBSCR17	SNP	Missense_Mutation	7	71175821	T	G	55	77
BRCA	TCGA-AN-A0AR	C1GALT1	SNP	Splice_site	7	7274170	G	A	35	72
BRCA	TCGA-AN-A0AR	CYP3A4	SNP	Silent	7	99358487	G	T	45	51
BRCA	TCGA-AN-A0AR	PABPC1	SNP	Missense_Mutation	8	101717869	C	G	29	71
BRCA	TCGA-AN-A0AR	COL14A1	SNP	Silent	8	121170400	A	G	13	44
BRCA	TCGA-AN-A0AR	DENND3	SNP	Missense_Mutation	8	142146810	C	G	22	48
BRCA	TCGA-AN-A0AR	UNC5D	SNP	Missense_Mutation	8	35608123	A	T	4	54
BRCA	TCGA-AN-A0AR	KCNU1	SNP	Missense_Mutation	8	36768470	A	T	10	83
BRCA	TCGA-AN-A0AR	MCM4	SNP	Silent	8	48883292	G	A	33	60
BRCA	TCGA-AN-A0AR	VCPIP1	SNP	Silent	8	67547576	T	C	59	56
BRCA	TCGA-AN-A0AR	LRRCC1	SNP	Missense_Mutation	8	86053669	G	C	45	73
BRCA	TCGA-AN-A0AR	KCNS2	SNP	Missense_Mutation	8	99441462	C	T	27	73
BRCA	TCGA-AN-A0AR	ZNF189	DEL	Frame_Shift_Del	9	104171093	AGTGTGGAAAA	-	11	59
BRCA	TCGA-AN-A0AR	FKBP15	SNP	Missense_Mutation	9	115983521	C	T	17	76
BRCA	TCGA-AN-A0AR	CDK5RAP2	SNP	Missense_Mutation	9	123280815	T	G	51	51
BRCA	TCGA-AN-A0AR	DENND1A	SNP	Splice_Site	9	126371761	C	G	20	81
BRCA	TCGA-AN-A0AR	FCN2	SNP	Missense_Mutation	9	137774483	G	C	33	47
BRCA	TCGA-AN-A0AR	TLN1	DEL	Frame_Shift_Del	9	35698399	A	-	14	90
BRCA	TCGA-AN-A0AR	ZCCHC6	SNP	Silent	9	88932177	G	C	45	50
BRCA	TCGA-AN-A0AS	CFH	SNP	Missense_Mutation	1	196648903	G	A	40	30
BRCA	TCGA-AN-A0AS	LHX9	SNP	Missense_Mutation	1	197890729	G	A	35	100
BRCA	TCGA-AN-A0AS	OR14C36	SNP	Missense_Mutation	1	248512969	C	T	26	61
BRCA	TCGA-AN-A0AS	ADD3	SNP	Missense_Mutation	10	111860581	G	A	37	100
BRCA	TCGA-AN-A0AS	MADD	SNP	Splice_Site	11	47304168	G	T	36	99
BRCA	TCGA-AN-A0AS	TIMELESS	SNP	Missense_Mutation	12	56815795	C	A	30	94
BRCA	TCGA-AN-A0AS	CEP290	SNP	Splice_Site	12	88514773	C	A	18	95
BRCA	TCGA-AN-A0AS	SLC7A1	SNP	Silent	13	30097477	G	A	40	32
BRCA	TCGA-AN-A0AS	FREM2	SNP	Missense_Mutation	13	39450219	G	A	38	52
BRCA	TCGA-AN-A0AS	RYR3	SNP	Silent	15	33927942	C	T	31	32
BRCA	TCGA-AN-A0AS	SCAPER	SNP	Missense_Mutation	15	77025641	T	C	54	65
BRCA	TCGA-AN-A0AS	CHD2	SNP	Missense_Mutation	15	93522492	A	G	9	93
BRCA	TCGA-AN-A0AS	KCNH4	SNP	Missense_Mutation	17	40328183	C	T	19	87
BRCA	TCGA-AN-A0AS	TP53	DEL	In_Frame_Del	17	7579356	GAC	-	33	49
BRCA	TCGA-AN-A0AS	ZNF536	SNP	Silent	19	30934637	C	T	23	28
BRCA	TCGA-AN-A0AS	TEAD2	SNP	Missense_Mutation	19	49850509	C	T	22	95
BRCA	TCGA-AN-A0AS	TTN	SNP	Nonsense_Mutation	2	179455719	G	A	39	66
BRCA	TCGA-AN-A0AS	AOX1	SNP	Missense_Mutation	2	201478612	G	C	36	83
BRCA	TCGA-AN-A0AS	EPAS1	SNP	Missense_Mutation	2	46588075	A	G	5	55
BRCA	TCGA-AN-A0AS	TGFA	SNP	Missense_Mutation	2	70742012	T	C	62	72
BRCA	TCGA-AN-A0AS	AGPAT3	SNP	Missense_Mutation	21	45379705	G	A	38	74
BRCA	TCGA-AN-A0AS	TTLL8	SNP	Nonsense_Mutation	22	50480096	C	A	29	65
BRCA	TCGA-AN-A0AS	COL4A5	SNP	Silent	23	107829952	T	C	58	54
BRCA	TCGA-AN-A0AS	FAM47B	SNP	Missense_Mutation	23	34961802	C	T	23	71
BRCA	TCGA-AN-A0AS	AKAP4	SNP	Missense_Mutation	23	49957446	C	G	29	73
BRCA	TCGA-AN-A0AS	TAF1	SNP	Missense_Mutation	23	70627430	C	T	29	94
BRCA	TCGA-AN-A0AS	CITED1	SNP	Missense_Mutation	23	71521748	A	G	11	49
BRCA	TCGA-AN-A0AS	ZNF711	SNP	Missense_Mutation	23	84525072	G	A	48	67
BRCA	TCGA-AN-A0AS	GPR156	SNP	Missense_Mutation	3	119886712	G	A	38	49
BRCA	TCGA-AN-A0AS	DGKG	SNP	Silent	3	185993430	G	A	40	41
BRCA	TCGA-AN-A0AS	TMEM44	SNP	Missense_Mutation	3	194331653	C	G	17	59
BRCA	TCGA-AN-A0AS	MAP3K1	INS	Frame_Shift_Ins	5	56170931	-	T	32	94
BRCA	TCGA-AN-A0AS	RAD17	SNP	Missense_Mutation	5	68692264	C	T	19	75
BRCA	TCGA-AN-A0AS	WRNIP1	SNP	Silent	6	2785330	G	A	45	85
BRCA	TCGA-AN-A0AS	SMARCD3	DEL	Frame_Shift_Del	7	150936239	G	-	47	94
BRCA	TCGA-AN-A0AS	BAZ1B	SNP	Missense_Mutation	7	72892315	C	A	30	66
BRCA	TCGA-AN-A0AS	COL22A1	SNP	Splice_Site	8	139675984	C	A	24	62
BRCA	TCGA-AN-A0AT	CTTNBP2NL	SNP	Missense_Mutation	1	112999478	T	A	50	88
BRCA	TCGA-AN-A0AT	HAO2	SNP	Missense_Mutation	1	119927617	G	A	45	61
BRCA	TCGA-AN-A0AT	PDE4DIP	SNP	Missense_Mutation	1	144921921	C	T	26	66
BRCA	TCGA-AN-A0AT	IL6R	SNP	Missense_Mutation	1	154437823	C	G	17	51
BRCA	TCGA-AN-A0AT	GON4L	SNP	Splice_Site	1	155753882	T	G	55	74
BRCA	TCGA-AN-A0AT	SEMA4A	SNP	Missense_Mutation	1	156124481	C	T	26	61
BRCA	TCGA-AN-A0AT	INSRR	DEL	Frame_Shift_Del	1	156814280	CTGT	-	20	63
BRCA	TCGA-AN-A0AT	KIAA1804	SNP	Silent	1	233515008	G	A	46	57
BRCA	TCGA-AN-A0AT	FMN2	SNP	Missense_Mutation	1	240497202	C	A	24	88
BRCA	TCGA-AN-A0AT	TMEM57	SNP	Missense_Mutation	1	25810708	G	T	37	97
BRCA	TCGA-AN-A0AT	PUM1	SNP	Silent	1	31439034	C	T	28	89
BRCA	TCGA-AN-A0AT	RLF	SNP	Missense_Mutation	1	40654877	G	C	36	74
BRCA	TCGA-AN-A0AT	DPH2	SNP	Silent	1	44436295	T	C	52	52
BRCA	TCGA-AN-A0AT	LRP8	SNP	Missense_Mutation	1	53727829	A	G	10	72
BRCA	TCGA-AN-A0AT	NFIA	SNP	Silent	1	61869882	G	A	33	84
BRCA	TCGA-AN-A0AT	DNMBP	SNP	Missense_Mutation	10	101648689	C	T	18	56
BRCA	TCGA-AN-A0AT	ANKRD30A	SNP	Missense_Mutation	10	37490246	A	T	4	58
BRCA	TCGA-AN-A0AT	OGDHL	SNP	Missense_Mutation	10	50946058	A	T	7	90
BRCA	TCGA-AN-A0AT	ADAMTS14	SNP	Missense_Mutation	10	72498656	G	T	41	98
BRCA	TCGA-AN-A0AT	CUL5	SNP	Missense_Mutation	11	107968417	G	A	36	98
BRCA	TCGA-AN-A0AT	TBRG1	SNP	Nonsense_Mutation	11	124494848	G	T	45	93
BRCA	TCGA-AN-A0AT	CALCA	SNP	Missense_Mutation	11	14989307	G	C	48	63
BRCA	TCGA-AN-A0AT	FADS2	SNP	Silent	11	61608167	T	A	63	25
BRCA	TCGA-AN-A0AT	NAALADL1	SNP	Silent	11	64825817	C	T	32	55
BRCA	TCGA-AN-A0AT	NUMA1	SNP	Missense_Mutation	11	71726884	C	G	28	54
BRCA	TCGA-AN-A0AT	SLC17A8	SNP	Missense_Mutation	12	100795569	G	A	42	100
BRCA	TCGA-AN-A0AT	STAB2	SNP	Missense_Mutation	12	104097010	A	T	4	87
BRCA	TCGA-AN-A0AT	BRCA2	SNP	Missense_Mutation	13	32936802	G	C	33	100
BRCA	TCGA-AN-A0AT	OR4K2	SNP	Missense_Mutation	14	20344945	G	T	35	33
BRCA	TCGA-AN-A0AT	MIS18BP1	SNP	Missense_Mutation	14	45711518	G	C	33	50
BRCA	TCGA-AN-A0AT	ZFYVE1	DEL	Frame_Shift_Del	14	73464532	CTGGGTGT	-	28	53
BRCA	TCGA-AN-A0AT	CYFIP1	SNP	Splice_site	15	22960793	G	C	44	78
BRCA	TCGA-AN-A0AT	GATM	SNP	Missense_Mutation	15	45658366	C	A	25	69
BRCA	TCGA-AN-A0AT	IGDCC3	SNP	Missense_Mutation	15	65667575	A	C	5	65
BRCA	TCGA-AN-A0AT	C15orf39	SNP	Missense_Mutation	15	75500670	G	A	41	54
BRCA	TCGA-AN-A0AT	VWA3A	SNP	Missense_Mutation	16	22134947	G	C	33	57
BRCA	TCGA-AN-A0AT	ITGAD	SNP	Silent	16	31422067	C	A	23	29
BRCA	TCGA-AN-A0AT	ZNF597	SNP	Silent	16	3487525	C	T	28	52
BRCA	TCGA-AN-A0AT	CREBBP	INS	Frame_Shift_Ins	16	3823824	-	T	44	51
BRCA	TCGA-AN-A0AT	ADCY9	SNP	Missense_Mutation	16	4057542	T	A	50	62
BRCA	TCGA-AN-A0AT	TFAP4	SNP	Missense_Mutation	16	4312598	T	C	60	87
BRCA	TCGA-AN-A0AT	NKD1	SNP	Missense_Mutation	16	50664794	G	T	47	52
BRCA	TCGA-AN-A0AT	BBS2	SNP	Silent	16	56553673	G	A	47	77
BRCA	TCGA-AN-A0AT	CTCF	SNP	Nonsense_Mutation	16	67645308	G	A	42	100
BRCA	TCGA-AN-A0AT	HYDIN	SNP	Missense_Mutation	16	71098655	G	C	34	71
BRCA	TCGA-AN-A0AT	DHX40	SNP	Missense_Mutation	17	57654510	G	A	40	58
BRCA	TCGA-AN-A0AT	QRICH2	SNP	Missense_Mutation	17	74288109	C	G	18	48
BRCA	TCGA-AN-A0AT	MRPL12	SNP	Silent	17	79674249	C	T	27	31
BRCA	TCGA-AN-A0AT	SLC44A2	SNP	Silent	19	10742750	C	T	30	58
BRCA	TCGA-AN-A0AT	CEACAM21	SNP	Missense_Mutation	19	42085765	G	A	40	49
BRCA	TCGA-AN-A0AT	POU2F2	SNP	Missense_Mutation	19	42626508	G	C	48	54
BRCA	TCGA-AN-A0AT	KLK8	SNP	Missense_Mutation	19	51503734	C	A	26	89
BRCA	TCGA-AN-A0AT	ZNF613	SNP	Missense_Mutation	19	52448266	G	T	48	89
BRCA	TCGA-AN-A0AT	LILRB3	SNP	Missense_Mutation	19	54746380	C	T	19	52
BRCA	TCGA-AN-A0AT	KIR2DL3	SNP	Missense_Mutation	19	55250982	C	T	17	50
BRCA	TCGA-AN-A0AT	SAFB2	SNP	Missense_Mutation	19	5590388	C	T	30	64
BRCA	TCGA-AN-A0AT	ZIM3	SNP	Missense_Mutation	19	57647274	T	A	52	62
BRCA	TCGA-AN-A0AT	ZNF418	SNP	Missense_Mutation	19	58438056	C	T	19	42
BRCA	TCGA-AN-A0AT	TIMM44	SNP	Splice_site	19	7998974	C	A	24	93
BRCA	TCGA-AN-A0AT	BCL2L11	SNP	Missense_Mutation	2	111881572	A	G	11	57
BRCA	TCGA-AN-A0AT	CNTNAP5	SNP	Missense_Mutation	2	125262113	G	A	38	48
BRCA	TCGA-AN-A0AT	PROC	SNP	Missense_Mutation	2	128186352	A	G	8	68
BRCA	TCGA-AN-A0AT	SCN7A	SNP	Missense_Mutation	2	167262191	C	A	32	46
BRCA	TCGA-AN-A0AT	B3GALT1	SNP	Missense_Mutation	2	168725803	G	A	34	78
BRCA	TCGA-AN-A0AT	TTN	SNP	Missense_Mutation	2	179606022	T	C	59	64
BRCA	TCGA-AN-A0AT	FZD7	SNP	Missense_Mutation	2	202899638	G	C	44	100
BRCA	TCGA-AN-A0AT	ERBB4	SNP	Missense_Mutation	2	212248654	C	T	29	85
BRCA	TCGA-AN-A0AT	LRRFIP1	SNP	Missense_Mutation	2	238671248	A	G	3	79
BRCA	TCGA-AN-A0AT	CAD	SNP	Missense_Mutation	2	27448725	C	A	17	70
BRCA	TCGA-AN-A0AT	PREPL	DEL	Frame_Shift_Del	2	44548558	GTACAGGAATT	-	40	43
BRCA	TCGA-AN-A0AT	ERLEC1	SNP	Missense_Mutation	2	54035587	G	T	46	99
BRCA	TCGA-AN-A0AT	SFXN5	SNP	Missense_Mutation	2	73268023	T	G	49	73
BRCA	TCGA-AN-A0AT	ALMS1	SNP	Missense_Mutation	2	73747041	C	T	17	52
BRCA	TCGA-AN-A0AT	DNAH6	SNP	Splice_site	2	84785059	G	T	35	81
BRCA	TCGA-AN-A0AT	SOGA1	SNP	Missense_Mutation	20	35444226	A	C	7	89
BRCA	TCGA-AN-A0AT	SIGLEC1	SNP	Missense_Mutation	20	3686511	C	T	19	37
BRCA	TCGA-AN-A0AT	C20orf195	SNP	Silent	20	62187736	T	C	51	30
BRCA	TCGA-AN-A0AT	MYO18B	SNP	Missense_Mutation	22	26422671	C	G	22	85
BRCA	TCGA-AN-A0AT	KREMEN1	SNP	Splice_site	22	29521252	T	G	64	86
BRCA	TCGA-AN-A0AT	NPTXR	SNP	Silent	22	39218758	C	G	29	82
BRCA	TCGA-AN-A0AT	TRMT2B	SNP	Missense_Mutation	23	100274386	G	T	44	58
BRCA	TCGA-AN-A0AT	TEX13A	SNP	Missense_Mutation	23	104464663	T	G	55	47
BRCA	TCGA-AN-A0AT	DOCK11	SNP	Silent	23	117814519	A	G	3	74
BRCA	TCGA-AN-A0AT	UPF3B	SNP	Missense_Mutation	23	118971940	C	T	31	68
BRCA	TCGA-AN-A0AT	SLC25A14	SNP	Silent	23	129483303	C	T	31	52
BRCA	TCGA-AN-A0AT	IQSEC2	SNP	Missense_Mutation	23	53268410	C	G	19	82
BRCA	TCGA-AN-A0AT	PCCB	SNP	Missense_Mutation	3	136045650	T	G	56	68
BRCA	TCGA-AN-A0AT	EXOC1	SNP	Missense_Mutation	4	56744164	C	T	28	98
BRCA	TCGA-AN-A0AT	PROL1	SNP	Missense_Mutation	4	71275628	G	A	34	51
BRCA	TCGA-AN-A0AT	PRKG2	SNP	Missense_Mutation	4	82125781	C	G	29	64
BRCA	TCGA-AN-A0AT	C5orf60	SNP	Missense_Mutation	5	179069969	G	C	41	54
BRCA	TCGA-AN-A0AT	VCAN	SNP	Missense_Mutation	5	82815833	A	T	6	64
BRCA	TCGA-AN-A0AT	PRDM1	SNP	Missense_Mutation	6	106553082	C	G	28	56
BRCA	TCGA-AN-A0AT	AIM1	SNP	Missense_Mutation	6	106967226	G	C	42	86
BRCA	TCGA-AN-A0AT	NR2E1	SNP	Missense_Mutation	6	108502082	G	C	44	96
BRCA	TCGA-AN-A0AT	HIVEP2	SNP	Missense_Mutation	6	143091275	C	A	24	64
BRCA	TCGA-AN-A0AT	CCDC170	SNP	Missense_Mutation	6	151907108	A	G	11	63
BRCA	TCGA-AN-A0AT	SYNE1	SNP	Missense_Mutation	6	152826437	T	G	58	93
BRCA	TCGA-AN-A0AT	ACAT2	SNP	Silent	6	160189602	C	T	17	64
BRCA	TCGA-AN-A0AT	SMOC2	SNP	Missense_Mutation	6	168910709	C	A	29	93
BRCA	TCGA-AN-A0AT	VPS52	SNP	Silent	6	33231848	A	G	11	50
BRCA	TCGA-AN-A0AT	ABCC10	SNP	Missense_Mutation	6	43412867	C	A	22	56
BRCA	TCGA-AN-A0AT	PKHD1	SNP	Silent	6	51890477	A	G	16	41
BRCA	TCGA-AN-A0AT	DST	SNP	Missense_Mutation	6	56357785	A	T	9	79
BRCA	TCGA-AN-A0AT	CHRM2	SNP	Missense_Mutation	7	136700174	T	A	56	92
BRCA	TCGA-AN-A0AT	DGKI	SNP	Missense_Mutation	7	137266623	C	A	17	100
BRCA	TCGA-AN-A0AT	TRMT12	SNP	Missense_Mutation	8	125464331	C	G	18	55
BRCA	TCGA-AN-A0AT	TNFRSF10D	DEL	Frame_Shift_Del	8	23004508	TTTTA	-	64	50
BRCA	TCGA-AN-A0AT	KCNT1	SNP	Missense_Mutation	9	138660471	G	T	35	53
BRCA	TCGA-AN-A0AT	CACNA1B	SNP	Missense_Mutation	9	140970316	C	T	21	100
BRCA	TCGA-AN-A0AT	ARID3C	SNP	Missense_Mutation	9	34623463	G	A	38	55
BRCA	TCGA-AN-A0AT	GNAQ	SNP	Missense_Mutation	9	80412549	C	A	21	77
BRCA	TCGA-AN-A0AT	TLE4	SNP	Missense_Mutation	9	82323054	G	T	40	89
BRCA	TCGA-AN-A0FD	POGZ	SNP	Missense_Mutation	1	151378134	T	C	50	88
BRCA	TCGA-AN-A0FD	CFH	SNP	Missense_Mutation	1	196684846	C	G	20	41
BRCA	TCGA-AN-A0FD	RWDD3	SNP	Nonsense_Mutation	1	95710162	A	T	9	71
BRCA	TCGA-AN-A0FD	WAC	DEL	Frame_Shift_Del	10	28824639	GT	-	36	73
BRCA	TCGA-AN-A0FD	ZEB1	SNP	Missense_Mutation	10	31815819	C	T	25	62
BRCA	TCGA-AN-A0FD	VDAC2	SNP	Missense_Mutation	10	76982078	A	T	2	79
BRCA	TCGA-AN-A0FD	GATA3	INS	Frame_Shift_Ins	10	8115832	-	G	23	86
BRCA	TCGA-AN-A0FD	MLL	SNP	Silent	11	118392845	C	G	24	71
BRCA	TCGA-AN-A0FD	FAM111A	SNP	Silent	11	58920329	G	A	34	47
BRCA	TCGA-AN-A0FD	NXF1	SNP	Silent	11	62569083	G	A	40	46
BRCA	TCGA-AN-A0FD	TAS2R8	SNP	Missense_Mutation	12	10958729	A	G	4	73
BRCA	TCGA-AN-A0FD	DBX2	SNP	Missense_Mutation	12	45410172	C	G	20	49
BRCA	TCGA-AN-A0FD	CEP290	DEL	Frame_Shift_Del	12	88533308	C	-	32	77
BRCA	TCGA-AN-A0FD	DGKE	SNP	Silent	17	54940026	C	A	22	50
BRCA	TCGA-AN-A0FD	VMP1	SNP	Silent	17	57842469	C	T	32	71
BRCA	TCGA-AN-A0FD	ACE	SNP	Missense_Mutation	17	61560393	G	A	36	60
BRCA	TCGA-AN-A0FD	RGS9	SNP	Missense_Mutation	17	63221454	C	G	30	90
BRCA	TCGA-AN-A0FD	MAP4K1	SNP	Nonsense_Mutation	19	39088180	T	A	54	72
BRCA	TCGA-AN-A0FD	DCAF17	SNP	Missense_Mutation	2	172300067	C	G	26	85
BRCA	TCGA-AN-A0FD	SMARCAL1	SNP	Missense_Mutation	2	217303196	G	T	46	64
BRCA	TCGA-AN-A0FD	TMEM214	SNP	Missense_Mutation	2	27259373	T	G	58	62
BRCA	TCGA-AN-A0FD	DOCK11	SNP	Nonsense_Mutation	23	117788766	G	T	47	83
BRCA	TCGA-AN-A0FD	SYAP1	SNP	Silent	23	16737865	C	T	25	54
BRCA	TCGA-AN-A0FD	TBL1X	SNP	Missense_Mutation	23	9661417	G	T	41	96
BRCA	TCGA-AN-A0FD	ADPRH	SNP	Missense_Mutation	3	119301234	C	A	26	53
BRCA	TCGA-AN-A0FD	PTPN23	SNP	Silent	3	47450966	C	T	18	79
BRCA	TCGA-AN-A0FD	SPRY1	SNP	Silent	4	124323154	A	G	15	49
BRCA	TCGA-AN-A0FD	PCDH18	SNP	Missense_Mutation	4	138442550	C	T	19	95
BRCA	TCGA-AN-A0FD	WDR17	SNP	Missense_Mutation	4	177041218	A	C	16	59
BRCA	TCGA-AN-A0FD	ZNF131	SNP	Missense_Mutation	5	43161487	G	A	44	96
BRCA	TCGA-AN-A0FD	HS3ST5	SNP	Missense_Mutation	6	114379175	A	G	4	93
BRCA	TCGA-AN-A0FD	MLLT4	SNP	Missense_Mutation	6	168352254	C	T	23	43
BRCA	TCGA-AN-A0FD	MRAP2	SNP	Silent	6	84799080	C	A	30	62
BRCA	TCGA-AN-A0FD	ABCA13	SNP	Missense_Mutation	7	48443437	C	T	23	69
BRCA	TCGA-AN-A0FD	ANK1	SNP	Missense_Mutation	8	41530332	C	T	19	68
BRCA	TCGA-AN-A0FD	ASPH	INS	In_Frame_Ins	8	62580816	-	GTC	42	62
BRCA	TCGA-AN-A0FF	DRAXIN	SNP	Nonsense_Mutation	1	11766688	C	T	23	59
BRCA	TCGA-AN-A0FF	NR1I3	SNP	Nonsense_Mutation	1	161200619	G	A	38	55
BRCA	TCGA-AN-A0FF	PPIH	SNP	Missense_Mutation	1	43124990	A	G	16	45
BRCA	TCGA-AN-A0FF	PDCD11	SNP	Missense_Mutation	10	105172930	C	T	27	89
BRCA	TCGA-AN-A0FF	PRPF18	SNP	Silent	10	13642249	G	A	34	60
BRCA	TCGA-AN-A0FF	ARHGAP32	SNP	Missense_Mutation	11	128846505	C	T	19	100
BRCA	TCGA-AN-A0FF	OR8H1	SNP	Missense_Mutation	11	56058466	T	A	50	45
BRCA	TCGA-AN-A0FF	GOLGA3	DEL	In_Frame_Del	12	133384597	TCC	-	50	70
BRCA	TCGA-AN-A0FF	GOLGA3	DEL	In_Frame_Del	12	133384601	CAGGAATCT	-	25	45
BRCA	TCGA-AN-A0FF	DNAH2	SNP	Missense_Mutation	17	7664193	T	C	52	87
BRCA	TCGA-AN-A0FF	AKAP8L	SNP	Missense_Mutation	19	15491335	T	C	57	61
BRCA	TCGA-AN-A0FF	ENSG00000213976	SNP	Missense_Mutation	19	21838830	A	C	8	39
BRCA	TCGA-AN-A0FF	MEGF8	SNP	Missense_Mutation	19	42858174	A	G	6	85
BRCA	TCGA-AN-A0FF	ZNF234	SNP	Missense_Mutation	19	44660780	A	G	16	51
BRCA	TCGA-AN-A0FF	TTN	SNP	Silent	2	179547548	C	T	24	42
BRCA	TCGA-AN-A0FF	SPEG	SNP	Silent	2	220333726	C	T	22	46
BRCA	TCGA-AN-A0FF	CYP24A1	SNP	Missense_Mutation	20	52774114	A	G	8	59
BRCA	TCGA-AN-A0FF	GNAS	INS	Frame_Shift_Ins	20	57470704	-	A	33	51
BRCA	TCGA-AN-A0FF	MED14	SNP	Missense_Mutation	23	40511087	G	A	33	96
BRCA	TCGA-AN-A0FF	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AN-A0FF	UBA6	SNP	Missense_Mutation	4	68536192	G	A	40	80
BRCA	TCGA-AN-A0FF	PCDHA7	SNP	Silent	5	140214361	G	A	39	21
BRCA	TCGA-AN-A0FF	HEATR7B2	SNP	Splice_site	5	41057211	C	T	24	75
BRCA	TCGA-AN-A0FF	SNAPC3	SNP	Missense_Mutation	9	15444655	G	A	43	86
BRCA	TCGA-AN-A0FJ	CD2	SNP	Missense_Mutation	1	117297341	G	C	45	56
BRCA	TCGA-AN-A0FJ	FAM46C	SNP	Missense_Mutation	1	118166379	G	A	38	56
BRCA	TCGA-AN-A0FJ	FDPS	SNP	Silent	1	155290280	C	T	32	84
BRCA	TCGA-AN-A0FJ	PFKFB2	SNP	Missense_Mutation	1	207235325	C	T	23	97
BRCA	TCGA-AN-A0FJ	TRAF3IP3	SNP	Silent	1	209951472	A	G	7	49
BRCA	TCGA-AN-A0FJ	KIF17	SNP	Missense_Mutation	1	21014060	C	T	21	53
BRCA	TCGA-AN-A0FJ	PRSS38	DNP	Missense_Mutation	1	228005112	GC	TT	46	44
BRCA	TCGA-AN-A0FJ	MYOM3	SNP	Missense_Mutation	1	24384096	C	T	19	53
BRCA	TCGA-AN-A0FJ	C1orf101	SNP	Missense_Mutation	1	244798805	C	T	17	50
BRCA	TCGA-AN-A0FJ	HDAC1	SNP	Missense_Mutation	1	32797323	G	T	44	97
BRCA	TCGA-AN-A0FJ	TRIT1	SNP	Missense_Mutation	1	40307548	C	G	32	84
BRCA	TCGA-AN-A0FJ	EIF2B3	SNP	Silent	1	45323458	G	A	45	60
BRCA	TCGA-AN-A0FJ	DOCK7	SNP	Missense_Mutation	1	62970310	C	G	32	65
BRCA	TCGA-AN-A0FJ	ROR1	SNP	Missense_Mutation	1	64515374	A	T	10	64
BRCA	TCGA-AN-A0FJ	DNAJC6	SNP	Nonsense_Mutation	1	65855273	C	A	19	48
BRCA	TCGA-AN-A0FJ	SLC44A5	SNP	Silent	1	75693466	C	T	30	50
BRCA	TCGA-AN-A0FJ	DNMBP	SNP	Missense_Mutation	10	101668763	G	A	37	71
BRCA	TCGA-AN-A0FJ	ARMC3	SNP	Silent	10	23326258	G	A	40	39
BRCA	TCGA-AN-A0FJ	IPMK	SNP	Silent	10	59956131	C	T	27	39
BRCA	TCGA-AN-A0FJ	COL13A1	SNP	Missense_Mutation	10	71690163	G	A	38	71
BRCA	TCGA-AN-A0FJ	ITIH5	SNP	Missense_Mutation	10	7605295	G	C	42	63
BRCA	TCGA-AN-A0FJ	MICALCL	SNP	Missense_Mutation	11	12315451	G	T	36	46
BRCA	TCGA-AN-A0FJ	PRKCDBP	SNP	Missense_Mutation	11	6340957	G	A	46	52
BRCA	TCGA-AN-A0FJ	SCUBE2	SNP	Silent	11	9080884	T	C	50	62
BRCA	TCGA-AN-A0FJ	MTMR2	SNP	Missense_Mutation	11	95583906	G	A	47	98
BRCA	TCGA-AN-A0FJ	CCDC53	SNP	Missense_Mutation	12	102419768	C	T	32	70
BRCA	TCGA-AN-A0FJ	AMIGO2	SNP	Missense_Mutation	12	47471357	C	T	28	51
BRCA	TCGA-AN-A0FJ	SP1	SNP	Missense_Mutation	12	53775484	A	T	4	70
BRCA	TCGA-AN-A0FJ	KIF5A	SNP	Missense_Mutation	12	57976912	G	A	45	90
BRCA	TCGA-AN-A0FJ	MGAT4C	SNP	Missense_Mutation	12	86373693	G	A	40	72
BRCA	TCGA-AN-A0FJ	MPHOSPH8	SNP	Missense_Mutation	13	20220931	A	T	10	52
BRCA	TCGA-AN-A0FJ	RNF219	SNP	Missense_Mutation	13	79190455	C	G	29	91
BRCA	TCGA-AN-A0FJ	FARP1	SNP	Silent	13	99083458	C	T	29	53
BRCA	TCGA-AN-A0FJ	BRF1	SNP	Splice_site	14	105695250	G	A	38	91
BRCA	TCGA-AN-A0FJ	KCNH5	SNP	Missense_Mutation	14	63416872	C	A	18	100
BRCA	TCGA-AN-A0FJ	PLA2G4F	SNP	Missense_Mutation	15	42442039	C	T	30	66
BRCA	TCGA-AN-A0FJ	RFX7	SNP	Missense_Mutation	15	56387080	G	A	48	82
BRCA	TCGA-AN-A0FJ	ITGA11	SNP	Missense_Mutation	15	68695306	C	T	27	68
BRCA	TCGA-AN-A0FJ	C16orf91	SNP	Silent	16	1470148	G	C	45	44
BRCA	TCGA-AN-A0FJ	ANKS4B	SNP	Missense_Mutation	16	21261779	C	A	20	57
BRCA	TCGA-AN-A0FJ	HEATR3	SNP	Nonsense_Mutation	16	50112756	G	T	45	55
BRCA	TCGA-AN-A0FJ	NOD2	SNP	Missense_Mutation	16	50733855	C	G	23	80
BRCA	TCGA-AN-A0FJ	OR1A2	SNP	Missense_Mutation	17	3101670	C	G	29	55
BRCA	TCGA-AN-A0FJ	TP53	INS	Frame_Shift_Ins	17	7578460	-	G	10	89
BRCA	TCGA-AN-A0FJ	TP53	SNP	Silent	17	7578465	G	T	43	62
BRCA	TCGA-AN-A0FJ	PPAN-P2RY11	SNP	Missense_Mutation	19	10224406	C	T	30	52
BRCA	TCGA-AN-A0FJ	ZGLP1	SNP	Nonsense_Mutation	19	10415800	A	T	6	50
BRCA	TCGA-AN-A0FJ	HAUS8	SNP	Missense_Mutation	19	17169632	G	C	36	74
BRCA	TCGA-AN-A0FJ	HAPLN4	SNP	Missense_Mutation	19	19381108	C	T	29	66
BRCA	TCGA-AN-A0FJ	SUGP1	SNP	Missense_Mutation	19	19391074	C	T	29	75
BRCA	TCGA-AN-A0FJ	PBX4	SNP	Missense_Mutation	19	19675795	G	A	40	86
BRCA	TCGA-AN-A0FJ	ZNF626	SNP	Nonsense_Mutation	19	20807492	G	C	48	51
BRCA	TCGA-AN-A0FJ	MYH14	SNP	Missense_Mutation	19	50735280	C	G	19	91
BRCA	TCGA-AN-A0FJ	ZNF578	SNP	Silent	19	53007922	C	T	29	53
BRCA	TCGA-AN-A0FJ	ZNF71	SNP	Missense_Mutation	19	57133197	C	T	19	76
BRCA	TCGA-AN-A0FJ	MUC16	SNP	Missense_Mutation	19	9062300	C	A	21	43
BRCA	TCGA-AN-A0FJ	POTEF	SNP	Missense_Mutation	2	130877864	A	C	6	39
BRCA	TCGA-AN-A0FJ	THSD7B	SNP	Missense_Mutation	2	138000128	G	A	35	64
BRCA	TCGA-AN-A0FJ	COBLL1	SNP	Missense_Mutation	2	165551305	G	C	33	78
BRCA	TCGA-AN-A0FJ	TTN	SNP	Missense_Mutation	2	179449464	C	G	19	100
BRCA	TCGA-AN-A0FJ	NIF3L1	DEL	Frame_Shift_Del	2	201757024	AGAGT	-	7	57
BRCA	TCGA-AN-A0FJ	CREB1	SNP	Silent	2	208434996	C	T	21	52
BRCA	TCGA-AN-A0FJ	IRS1	SNP	Missense_Mutation	2	227663163	C	T	30	100
BRCA	TCGA-AN-A0FJ	COPS8	SNP	Missense_Mutation	2	237994668	G	A	37	97
BRCA	TCGA-AN-A0FJ	AGBL5	DEL	Frame_Shift_Del	2	27293023	TCTA	-	58	56
BRCA	TCGA-AN-A0FJ	EFEMP1	SNP	Missense_Mutation	2	56145073	C	T	29	98
BRCA	TCGA-AN-A0FJ	USP34	SNP	Silent	2	61622132	T	C	53	71
BRCA	TCGA-AN-A0FJ	EIF2AK3	SNP	Splice_site	2	88858435	C	A	24	62
BRCA	TCGA-AN-A0FJ	SLMO2	SNP	Splice_site	20	57613687	T	G	59	74
BRCA	TCGA-AN-A0FJ	DIP2A	SNP	Missense_Mutation	21	47904738	C	G	29	70
BRCA	TCGA-AN-A0FJ	EFCAB6	SNP	Missense_Mutation	22	43950819	G	A	40	52
BRCA	TCGA-AN-A0FJ	RAB40A	SNP	Silent	23	102755232	G	A	35	51
BRCA	TCGA-AN-A0FJ	GPR112	SNP	Missense_Mutation	23	135429691	G	A	33	51
BRCA	TCGA-AN-A0FJ	TRAPPC2	SNP	Missense_Mutation	23	13734771	G	C	45	69
BRCA	TCGA-AN-A0FJ	DYNLT3	SNP	Missense_Mutation	23	37700304	C	G	17	88
BRCA	TCGA-AN-A0FJ	PQBP1	SNP	Silent	23	48760064	C	T	19	50
BRCA	TCGA-AN-A0FJ	PHF8	SNP	Missense_Mutation	23	54014274	C	G	29	77
BRCA	TCGA-AN-A0FJ	NAP1L2	SNP	Silent	23	72433777	C	T	32	48
BRCA	TCGA-AN-A0FJ	OR5H1	SNP	Missense_Mutation	3	97851825	C	G	32	54
BRCA	TCGA-AN-A0FJ	CCDC110	SNP	Splice_Site	4	186383863	C	G	24	82
BRCA	TCGA-AN-A0FJ	MAN2B2	SNP	Silent	4	6621704	C	T	29	57
BRCA	TCGA-AN-A0FJ	AFF1	SNP	Silent	4	87967342	G	A	46	61
BRCA	TCGA-AN-A0FJ	DNAH5	SNP	Silent	5	13865833	A	G	1	43
BRCA	TCGA-AN-A0FJ	FBXL7	SNP	Missense_Mutation	5	15936870	C	T	23	74
BRCA	TCGA-AN-A0FJ	ATP10B	DEL	Frame_Shift_Del	5	160061486	TTGAGGGCTCGACA	-	60	75
BRCA	TCGA-AN-A0FJ	NIPBL	SNP	Missense_Mutation	5	36985957	G	T	36	76
BRCA	TCGA-AN-A0FJ	ECHDC1	SNP	Silent	6	127611347	G	T	43	50
BRCA	TCGA-AN-A0FJ	SNRPC	SNP	Missense_Mutation	6	34738134	T	C	51	91
BRCA	TCGA-AN-A0FJ	DST	SNP	Missense_Mutation	6	56482819	C	T	29	73
BRCA	TCGA-AN-A0FJ	EPHA7	SNP	Missense_Mutation	6	93956553	G	C	37	60
BRCA	TCGA-AN-A0FJ	FBXL4	SNP	Missense_Mutation	6	99322245	A	G	6	91
BRCA	TCGA-AN-A0FJ	WBSCR28	SNP	Missense_Mutation	7	73279502	A	G	14	21
BRCA	TCGA-AN-A0FJ	PON3	SNP	Missense_Mutation	7	94993187	G	A	45	96
BRCA	TCGA-AN-A0FJ	TRAPPC9	SNP	Silent	8	141461044	C	T	23	23
BRCA	TCGA-AN-A0FJ	LGI3	SNP	Missense_Mutation	8	22006360	G	C	48	57
BRCA	TCGA-AN-A0FJ	ASH2L	SNP	Missense_Mutation	8	37996363	G	T	36	62
BRCA	TCGA-AN-A0FJ	PRKDC	SNP	Missense_Mutation	8	48765336	C	A	24	59
BRCA	TCGA-AN-A0FJ	TTPA	SNP	Missense_Mutation	8	63978649	C	G	22	96
BRCA	TCGA-AN-A0FJ	TUBBP5	SNP	Silent	9	141071095	G	A	40	41
BRCA	TCGA-AN-A0FK	SEMA4A	DEL	In_Frame_Del	1	156146568	TCCTCT	-	58	74
BRCA	TCGA-AN-A0FK	MRPL24	SNP	Silent	1	156708153	G	A	37	45
BRCA	TCGA-AN-A0FK	CROCC	SNP	Missense_Mutation	1	17249200	G	A	38	59
BRCA	TCGA-AN-A0FK	PGBD5	SNP	Missense_Mutation	1	230468761	C	T	27	42
BRCA	TCGA-AN-A0FK	GPATCH3	SNP	Missense_Mutation	1	27219895	C	A	17	56
BRCA	TCGA-AN-A0FK	KRT80	SNP	Missense_Mutation	12	52579389	C	T	27	41
BRCA	TCGA-AN-A0FK	DUOX2	SNP	Splice_Site	15	45396252	C	T	24	94
BRCA	TCGA-AN-A0FK	DOC2A	SNP	Silent	16	30018123	C	T	23	21
BRCA	TCGA-AN-A0FK	CORO6	SNP	Silent	17	27948434	G	A	46	63
BRCA	TCGA-AN-A0FK	SOGA2	SNP	Missense_Mutation	18	8796377	C	T	24	76
BRCA	TCGA-AN-A0FK	DNASE2	SNP	Missense_Mutation	19	12991929	C	G	23	51
BRCA	TCGA-AN-A0FK	TRMT1	SNP	Missense_Mutation	19	13218608	G	A	40	90
BRCA	TCGA-AN-A0FK	BST2	SNP	Missense_Mutation	19	17516273	C	G	22	36
BRCA	TCGA-AN-A0FK	CREB3L3	SNP	Missense_Mutation	19	4171690	C	T	27	35
BRCA	TCGA-AN-A0FK	NLRP8	SNP	Silent	19	56466066	C	T	31	26
BRCA	TCGA-AN-A0FK	ELAVL1	SNP	Missense_Mutation	19	8032461	G	A	38	99
BRCA	TCGA-AN-A0FK	MUC16	SNP	Silent	19	9061379	T	C	51	46
BRCA	TCGA-AN-A0FK	PAX8	SNP	Nonsense_Mutation	2	113993061	G	A	46	90
BRCA	TCGA-AN-A0FK	SCN7A	SNP	Missense_Mutation	2	167298248	C	A	20	50
BRCA	TCGA-AN-A0FK	TRIP12	SNP	Missense_Mutation	2	230678717	C	T	32	79
BRCA	TCGA-AN-A0FK	OTOF	SNP	Missense_Mutation	2	26706481	C	T	27	99
BRCA	TCGA-AN-A0FK	PCNT	SNP	Silent	21	47819611	T	C	61	22
BRCA	TCGA-AN-A0FK	TTLL12	SNP	Nonsense_Mutation	22	43569738	G	A	39	65
BRCA	TCGA-AN-A0FK	LOC100289317	SNP	Silent	22	45724194	T	C	51	42
BRCA	TCGA-AN-A0FK	LOC203510	SNP	Missense_Mutation	23	111933403	G	T	35	64
BRCA	TCGA-AN-A0FK	RBMXL3	SNP	Missense_Mutation	23	114426666	G	A	37	67
BRCA	TCGA-AN-A0FK	ARSE	SNP	Missense_Mutation	23	2853148	G	A	43	60
BRCA	TCGA-AN-A0FK	AKAP4	SNP	Silent	23	49957345	C	T	23	45
BRCA	TCGA-AN-A0FK	YIPF6	SNP	Silent	23	67718953	G	A	38	45
BRCA	TCGA-AN-A0FK	DPPA2	SNP	Silent	3	109031471	G	A	40	48
BRCA	TCGA-AN-A0FK	KALRN	SNP	Silent	3	124380761	C	T	32	100
BRCA	TCGA-AN-A0FK	QARS	SNP	Missense_Mutation	3	49135886	C	G	30	70
BRCA	TCGA-AN-A0FK	RAD54L2	SNP	Missense_Mutation	3	51664777	G	A	45	82
BRCA	TCGA-AN-A0FK	DCLK2	SNP	Silent	4	151153908	C	T	20	56
BRCA	TCGA-AN-A0FK	WDR19	SNP	Missense_Mutation	4	39247000	G	T	44	88
BRCA	TCGA-AN-A0FK	KCTD16	SNP	Silent	5	143853657	T	C	64	65
BRCA	TCGA-AN-A0FK	TBP	SNP	Missense_Mutation	6	170871216	C	G	22	84
BRCA	TCGA-AN-A0FK	TTBK1	SNP	Missense_Mutation	6	43214504	G	A	44	91
BRCA	TCGA-AN-A0FK	MEOX2	SNP	Missense_Mutation	7	15666489	C	T	24	100
BRCA	TCGA-AN-A0FK	HOXA1	SNP	Missense_Mutation	7	27134949	C	T	27	52
BRCA	TCGA-AN-A0FK	DLGAP2	SNP	Missense_Mutation	8	1497608	C	T	27	67
BRCA	TCGA-AN-A0FK	DEFA4	SNP	Missense_Mutation	8	6794318	C	T	19	52
BRCA	TCGA-AN-A0FK	SLC28A3	SNP	Missense_Mutation	9	86894959	T	C	49	92
BRCA	TCGA-AN-A0FL	FAM102B	SNP	Missense_Mutation	1	109171386	A	G	16	63
BRCA	TCGA-AN-A0FL	MAGI3	SNP	Missense_Mutation	1	114225698	A	C	1	69
BRCA	TCGA-AN-A0FL	ITGA10	SNP	Silent	1	145535834	C	G	32	59
BRCA	TCGA-AN-A0FL	FCRL5	SNP	Silent	1	157514745	A	C	13	45
BRCA	TCGA-AN-A0FL	OR6K2	SNP	Missense_Mutation	1	158669708	G	T	36	57
BRCA	TCGA-AN-A0FL	ASTN1	SNP	Missense_Mutation	1	177001903	C	T	23	100
BRCA	TCGA-AN-A0FL	LMOD1	SNP	Missense_Mutation	1	201869213	C	G	30	95
BRCA	TCGA-AN-A0FL	C1orf74	SNP	Silent	1	209956185	C	G	23	17
BRCA	TCGA-AN-A0FL	INTS7	SNP	Missense_Mutation	1	212126020	C	T	30	84
BRCA	TCGA-AN-A0FL	PROX1	SNP	Missense_Mutation	1	214171443	C	T	19	100
BRCA	TCGA-AN-A0FL	DISP1	SNP	Silent	1	223178036	C	G	24	51
BRCA	TCGA-AN-A0FL	SIPA1L2	SNP	Silent	1	232561450	C	G	30	36
BRCA	TCGA-AN-A0FL	OR11L1	SNP	Missense_Mutation	1	248005072	C	A	17	39
BRCA	TCGA-AN-A0FL	MATN1	SNP	Splice_site	1	31188155	G	A	34	46
BRCA	TCGA-AN-A0FL	ARHGAP29	SNP	Missense_Mutation	1	94654845	C	G	24	48
BRCA	TCGA-AN-A0FL	FGFR2	SNP	Missense_Mutation	10	123258034	A	C	12	55
BRCA	TCGA-AN-A0FL	HSPA14	SNP	Missense_Mutation	10	14913531	G	A	47	90
BRCA	TCGA-AN-A0FL	DIP2C	DEL	Splice_site	10	461709	CTT	-	24	99
BRCA	TCGA-AN-A0FL	CCAR1	SNP	Missense_Mutation	10	70507310	G	T	34	50
BRCA	TCGA-AN-A0FL	DNTT	SNP	Missense_Mutation	10	98064440	G	T	43	70
BRCA	TCGA-AN-A0FL	OR10S1	SNP	Silent	11	123848324	G	A	33	57
BRCA	TCGA-AN-A0FL	NAV2	SNP	Missense_Mutation	11	20122549	G	C	38	100
BRCA	TCGA-AN-A0FL	AMBRA1	SNP	Missense_Mutation	11	46419206	C	G	28	57
BRCA	TCGA-AN-A0FL	CKAP5	SNP	Missense_Mutation	11	46766095	G	C	42	74
BRCA	TCGA-AN-A0FL	C11orf30	SNP	Missense_Mutation	11	76207278	C	G	29	57
BRCA	TCGA-AN-A0FL	RIMBP2	SNP	Missense_Mutation	12	130884319	A	C	3	89
BRCA	TCGA-AN-A0FL	FAR2	SNP	Missense_Mutation	12	29464069	G	T	46	87
BRCA	TCGA-AN-A0FL	C12orf40	SNP	Missense_Mutation	12	40114937	G	A	45	53
BRCA	TCGA-AN-A0FL	KDM5A	SNP	Missense_Mutation	12	427354	C	G	30	98
BRCA	TCGA-AN-A0FL	ASIC1	SNP	Missense_Mutation	12	50472232	C	T	18	77
BRCA	TCGA-AN-A0FL	NCKAP1L	SNP	Missense_Mutation	12	54891635	G	A	38	87
BRCA	TCGA-AN-A0FL	BEST3	SNP	Missense_Mutation	12	70049341	C	A	32	54
BRCA	TCGA-AN-A0FL	NEK5	SNP	Missense_Mutation	13	52693482	T	C	51	75
BRCA	TCGA-AN-A0FL	RBM26	SNP	Missense_Mutation	13	79928636	G	C	41	98
BRCA	TCGA-AN-A0FL	GPC5	SNP	Missense_Mutation	13	92345621	G	A	36	58
BRCA	TCGA-AN-A0FL	GPR132	SNP	Missense_Mutation	14	105517621	T	C	56	49
BRCA	TCGA-AN-A0FL	C14orf105	SNP	Silent	14	57960233	G	A	36	48
BRCA	TCGA-AN-A0FL	FAN1	DEL	Frame_Shift_Del	15	31206139	TTCGTTGACCGACTCAATG	-	64	46
BRCA	TCGA-AN-A0FL	SPTBN5	INS	Frame_Shift_Ins	15	42173295	-	T	48	53
BRCA	TCGA-AN-A0FL	SCG3	SNP	Missense_Mutation	15	51975544	A	G	9	63
BRCA	TCGA-AN-A0FL	RFX7	INS	In_Frame_Ins	15	56387034	-	GGGGTT	31	35
BRCA	TCGA-AN-A0FL	SIN3A	SNP	Missense_Mutation	15	75676645	C	G	23	87
BRCA	TCGA-AN-A0FL	TMC3	SNP	Missense_Mutation	15	81633785	C	T	28	100
BRCA	TCGA-AN-A0FL	RRN3	SNP	Splice_site	16	15173953	C	G	30	90
BRCA	TCGA-AN-A0FL	C16orf62	SNP	Nonsense_Mutation	16	19580756	C	G	29	88
BRCA	TCGA-AN-A0FL	ARHGAP17	SNP	Missense_Mutation	16	24950727	G	A	41	63
BRCA	TCGA-AN-A0FL	CCNF	SNP	Missense_Mutation	16	2495537	G	T	36	49
BRCA	TCGA-AN-A0FL	C16orf54	SNP	Silent	16	29756060	G	A	43	50
BRCA	TCGA-AN-A0FL	RGS11	SNP	Missense_Mutation	16	324238	T	G	54	54
BRCA	TCGA-AN-A0FL	LOC401847	SNP	Missense_Mutation	16	33605723	C	T	32	56
BRCA	TCGA-AN-A0FL	MARVELD3	DEL	Frame_Shift_Del	16	71674756	GGCAGGC	-	47	54
BRCA	TCGA-AN-A0FL	NPIPL2	SNP	Silent	16	74425915	G	A	40	49
BRCA	TCGA-AN-A0FL	LIG3	SNP	Missense_Mutation	17	33318105	C	G	21	72
BRCA	TCGA-AN-A0FL	ASPA	SNP	Nonsense_Mutation	17	3386852	T	A	51	50
BRCA	TCGA-AN-A0FL	GPR179	SNP	Missense_Mutation	17	36489841	G	A	40	93
BRCA	TCGA-AN-A0FL	KRT28	SNP	Missense_Mutation	17	38950240	G	A	38	65
BRCA	TCGA-AN-A0FL	NAT9	SNP	Missense_Mutation	17	72768136	G	A	47	71
BRCA	TCGA-AN-A0FL	TRIM65	SNP	Missense_Mutation	17	73888871	G	C	34	74
BRCA	TCGA-AN-A0FL	TP53	SNP	Splice_Site	17	7577610	T	C	53	82
BRCA	TCGA-AN-A0FL	NDC80	SNP	Splice_site	18	2585112	A	G	12	53
BRCA	TCGA-AN-A0FL	ENOSF1	SNP	Missense_Mutation	18	694282	G	A	38	91
BRCA	TCGA-AN-A0FL	CACNA1A	SNP	Silent	19	13441098	G	A	39	46
BRCA	TCGA-AN-A0FL	NR2F6	SNP	Silent	19	17355841	C	G	31	56
BRCA	TCGA-AN-A0FL	VSTM2B	SNP	Missense_Mutation	19	30054804	C	T	28	62
BRCA	TCGA-AN-A0FL	ZNF536	SNP	Missense_Mutation	19	30935520	G	A	39	100
BRCA	TCGA-AN-A0FL	LSR	SNP	Missense_Mutation	19	35758359	T	G	54	50
BRCA	TCGA-AN-A0FL	ARHGAP35	SNP	Silent	19	47492817	G	T	47	71
BRCA	TCGA-AN-A0FL	BCL2L12	SNP	Nonsense_Mutation	19	50169138	G	T	33	49
BRCA	TCGA-AN-A0FL	AFF3	SNP	Missense_Mutation	2	100210682	G	T	41	62
BRCA	TCGA-AN-A0FL	EDAR	SNP	Silent	2	109527386	C	T	27	54
BRCA	TCGA-AN-A0FL	ROCK2	SNP	Missense_Mutation	2	11334430	C	T	20	69
BRCA	TCGA-AN-A0FL	KIF5C	SNP	Missense_Mutation	2	149868090	C	A	22	100
BRCA	TCGA-AN-A0FL	SCN9A	SNP	Silent	2	167060936	C	T	32	68
BRCA	TCGA-AN-A0FL	FAM49A	SNP	Nonsense_Mutation	2	16742265	C	A	30	99
BRCA	TCGA-AN-A0FL	TTN	SNP	Missense_Mutation	2	179499339	C	A	25	89
BRCA	TCGA-AN-A0FL	TTN	SNP	Missense_Mutation	2	179647781	T	A	52	94
BRCA	TCGA-AN-A0FL	COL5A2	SNP	Missense_Mutation	2	189904261	C	A	26	100
BRCA	TCGA-AN-A0FL	DNAH7	SNP	Splice_site	2	196709889	T	A	62	53
BRCA	TCGA-AN-A0FL	MOB4	SNP	Missense_Mutation	2	198405102	C	G	29	100
BRCA	TCGA-AN-A0FL	ALS2CR8	SNP	Silent	2	203826061	T	A	58	57
BRCA	TCGA-AN-A0FL	ZDBF2	SNP	Nonsense_Mutation	2	207172679	G	T	45	50
BRCA	TCGA-AN-A0FL	CUL3	SNP	Silent	2	225346622	G	C	45	61
BRCA	TCGA-AN-A0FL	UGT1A3	SNP	Missense_Mutation	2	234638190	C	A	25	47
BRCA	TCGA-AN-A0FL	SH3BP4	INS	Frame_Shift_Ins	2	235949579	-	ATGCAAAGGAAGTG	1	59
BRCA	TCGA-AN-A0FL	TMC2	SNP	Missense_Mutation	20	2552868	A	G	1	75
BRCA	TCGA-AN-A0FL	RBL1	SNP	Silent	20	35696493	A	G	5	56
BRCA	TCGA-AN-A0FL	STK4	SNP	Missense_Mutation	20	43703761	C	T	27	62
BRCA	TCGA-AN-A0FL	CDH22	SNP	Silent	20	44839113	G	T	46	49
BRCA	TCGA-AN-A0FL	BRWD1	DEL	Frame_Shift_Del	21	40568481	CAGTA	-	29	55
BRCA	TCGA-AN-A0FL	MRPL40	SNP	Missense_Mutation	22	19423260	G	C	33	54
BRCA	TCGA-AN-A0FL	MMP11	SNP	Missense_Mutation	22	24124660	G	C	35	71
BRCA	TCGA-AN-A0FL	ATXN10	SNP	Silent	22	46202962	G	C	36	53
BRCA	TCGA-AN-A0FL	CLCN4	SNP	Missense_Mutation	23	10176333	G	C	42	59
BRCA	TCGA-AN-A0FL	KIAA1210	SNP	Missense_Mutation	23	118220634	C	A	28	54
BRCA	TCGA-AN-A0FL	XIAP	SNP	Silent	23	123040998	C	G	29	51
BRCA	TCGA-AN-A0FL	FRMPD4	SNP	Missense_Mutation	23	12736124	A	G	11	57
BRCA	TCGA-AN-A0FL	AFF2	SNP	Nonsense_Mutation	23	148037136	G	T	45	91
BRCA	TCGA-AN-A0FL	MPP1	SNP	Missense_Mutation	23	154009963	T	C	57	65
BRCA	TCGA-AN-A0FL	EBP	SNP	Missense_Mutation	23	48382367	G	T	46	70
BRCA	TCGA-AN-A0FL	PLP2	SNP	Silent	23	49028371	G	A	39	46
BRCA	TCGA-AN-A0FL	FOXP3	SNP	Splice_Site	23	49114119	A	G	14	70
BRCA	TCGA-AN-A0FL	FAAH2	SNP	Silent	23	57337119	C	T	30	54
BRCA	TCGA-AN-A0FL	PJA1	SNP	Missense_Mutation	23	68381469	A	G	8	60
BRCA	TCGA-AN-A0FL	PCDH11X	SNP	Missense_Mutation	23	91133182	G	T	44	62
BRCA	TCGA-AN-A0FL	PCDH19	SNP	Missense_Mutation	23	99662857	C	G	19	77
BRCA	TCGA-AN-A0FL	ATG3	SNP	Missense_Mutation	3	112256689	C	G	29	99
BRCA	TCGA-AN-A0FL	PLXNA1	SNP	Missense_Mutation	3	126707789	T	A	55	86
BRCA	TCGA-AN-A0FL	COLQ	SNP	Missense_Mutation	3	15495408	T	G	59	68
BRCA	TCGA-AN-A0FL	YEATS2	SNP	Missense_Mutation	3	183479305	C	G	32	75
BRCA	TCGA-AN-A0FL	TTC21A	SNP	Silent	3	39167781	A	G	6	42
BRCA	TCGA-AN-A0FL	ZNF167	SNP	Missense_Mutation	3	44607075	G	T	43	57
BRCA	TCGA-AN-A0FL	FAM116A	SNP	Missense_Mutation	3	57619004	G	C	45	70
BRCA	TCGA-AN-A0FL	ENSG00000179799	SNP	Silent	3	75406392	G	A	37	48
BRCA	TCGA-AN-A0FL	OGG1	SNP	Missense_Mutation	3	9798825	G	A	39	24
BRCA	TCGA-AN-A0FL	ANK2	SNP	Missense_Mutation	4	114276056	A	T	2	45
BRCA	TCGA-AN-A0FL	SYNPO2	SNP	Silent	4	119810233	G	T	43	58
BRCA	TCGA-AN-A0FL	PROM1	SNP	Missense_Mutation	4	15991372	G	C	41	64
BRCA	TCGA-AN-A0FL	SEPSECS	SNP	Missense_Mutation	4	25160722	C	A	17	86
BRCA	TCGA-AN-A0FL	CORIN	SNP	Missense_Mutation	4	47647207	A	C	14	53
BRCA	TCGA-AN-A0FL	SPATA18	SNP	Silent	4	52943137	G	A	38	42
BRCA	TCGA-AN-A0FL	EPHA5	SNP	Missense_Mutation	4	66468004	C	T	20	76
BRCA	TCGA-AN-A0FL	KIAA0232	SNP	Silent	4	6865760	A	G	4	44
BRCA	TCGA-AN-A0FL	SEC31A	SNP	Missense_Mutation	4	83802025	C	G	29	97
BRCA	TCGA-AN-A0FL	HELQ	SNP	Missense_Mutation	4	84350883	T	G	50	51
BRCA	TCGA-AN-A0FL	SPP1	SNP	Missense_Mutation	4	88902730	A	C	10	73
BRCA	TCGA-AN-A0FL	PCDHA1	SNP	Silent	5	140168170	C	G	21	59
BRCA	TCGA-AN-A0FL	PCDHB5	SNP	Missense_Mutation	5	140516039	C	A	17	56
BRCA	TCGA-AN-A0FL	RANBP3L	SNP	Nonsense_Mutation	5	36262047	G	C	45	58
BRCA	TCGA-AN-A0FL	SEC63	SNP	Silent	6	108246121	A	C	5	69
BRCA	TCGA-AN-A0FL	SEC63	SNP	Missense_Mutation	6	108250658	C	T	23	83
BRCA	TCGA-AN-A0FL	ZBTB24	SNP	Nonsense_Mutation	6	109787658	A	C	13	70
BRCA	TCGA-AN-A0FL	ZUFSP	SNP	Missense_Mutation	6	116973262	G	C	33	83
BRCA	TCGA-AN-A0FL	EPB41L2	SNP	Silent	6	131220709	C	T	27	59
BRCA	TCGA-AN-A0FL	SLC22A2	SNP	Missense_Mutation	6	160670398	C	T	23	51
BRCA	TCGA-AN-A0FL	PACSIN1	SNP	Missense_Mutation	6	34499505	G	A	38	81
BRCA	TCGA-AN-A0FL	PNPLA1	SNP	Missense_Mutation	6	36275473	C	G	18	43
BRCA	TCGA-AN-A0FL	XPO5	SNP	Silent	6	43535089	C	T	27	53
BRCA	TCGA-AN-A0FL	PLA2G7	SNP	Missense_Mutation	6	46684756	A	T	13	68
BRCA	TCGA-AN-A0FL	DEFB113	SNP	Missense_Mutation	6	49936517	G	A	34	43
BRCA	TCGA-AN-A0FL	LGSN	SNP	Missense_Mutation	6	63990398	G	A	34	96
BRCA	TCGA-AN-A0FL	RIMS1	SNP	Missense_Mutation	6	72596812	C	G	18	75
BRCA	TCGA-AN-A0FL	CD109	SNP	Missense_Mutation	6	74446225	A	T	3	64
BRCA	TCGA-AN-A0FL	AGFG2	DEL	In_Frame_Del	7	100161543	CCGCTGTTCCCCCCGCAGACC	-	18	55
BRCA	TCGA-AN-A0FL	MUC17	SNP	Missense_Mutation	7	100686047	T	A	58	41
BRCA	TCGA-AN-A0FL	KCND2	SNP	Silent	7	120387849	A	G	11	54
BRCA	TCGA-AN-A0FL	PLXNA4	SNP	Silent	7	131883300	G	C	45	52
BRCA	TCGA-AN-A0FL	DFNA5	SNP	Nonsense_Mutation	7	24738784	A	T	5	76
BRCA	TCGA-AN-A0FL	OSBPL3	SNP	Nonsense_Mutation	7	24911625	G	A	45	99
BRCA	TCGA-AN-A0FL	NOD1	SNP	Missense_Mutation	7	30469058	C	A	32	59
BRCA	TCGA-AN-A0FL	FBXL18	SNP	Missense_Mutation	7	5540818	G	A	37	60
BRCA	TCGA-AN-A0FL	CYTH3	SNP	Missense_Mutation	7	6210838	G	T	41	100
BRCA	TCGA-AN-A0FL	GNAT3	SNP	Nonsense_Mutation	7	80108225	C	T	30	99
BRCA	TCGA-AN-A0FL	ZFPM2	SNP	Silent	8	106815139	G	A	35	51
BRCA	TCGA-AN-A0FL	MRPL13	SNP	Missense_Mutation	8	121432115	T	C	56	60
BRCA	TCGA-AN-A0FL	ADCY8	SNP	Silent	8	131826440	G	T	38	85
BRCA	TCGA-AN-A0FL	TG	SNP	Missense_Mutation	8	133898735	C	T	30	89
BRCA	TCGA-AN-A0FL	C8orf31	SNP	Nonsense_Mutation	8	144126093	G	T	43	56
BRCA	TCGA-AN-A0FL	HEATR7A	DEL	Frame_Shift_Del	8	145223204	CCTCCACCCTGCTGGA	-	26	57
BRCA	TCGA-AN-A0FL	CSMD1	SNP	Missense_Mutation	8	3265726	G	A	40	100
BRCA	TCGA-AN-A0FL	PXDNL	SNP	Missense_Mutation	8	52366148	C	A	21	61
BRCA	TCGA-AN-A0FL	PENK	SNP	Silent	8	57358417	C	T	19	33
BRCA	TCGA-AN-A0FL	ZFHX4	SNP	Missense_Mutation	8	77617914	G	A	45	88
BRCA	TCGA-AN-A0FL	CORO2A	SNP	Missense_Mutation	9	100895427	C	G	32	97
BRCA	TCGA-AN-A0FL	LPAR1	SNP	Missense_Mutation	9	113637769	G	A	39	86
BRCA	TCGA-AN-A0FL	CCBL1	DEL	Splice_site	9	131600646	CCTG	-	22	95
BRCA	TCGA-AN-A0FL	C9orf78	SNP	Splice_Site	9	132593148	A	C	14	87
BRCA	TCGA-AN-A0FL	CER1	SNP	Missense_Mutation	9	14722336	A	G	11	49
BRCA	TCGA-AN-A0FL	FOCAD	SNP	Missense_Mutation	9	20789501	C	T	27	42
BRCA	TCGA-AN-A0FL	FOCAD	DEL	Frame_Shift_Del	9	20990248	C	-	26	50
BRCA	TCGA-AN-A0FL	FRMD3	SNP	Missense_Mutation	9	85950510	T	C	51	63
BRCA	TCGA-AN-A0FN	PTGFRN	SNP	Missense_Mutation	1	117492009	C	T	31	60
BRCA	TCGA-AN-A0FN	POLR3GL	SNP	Missense_Mutation	1	145457994	C	T	19	90
BRCA	TCGA-AN-A0FN	CSMD2	SNP	Missense_Mutation	1	34123560	G	A	39	100
BRCA	TCGA-AN-A0FN	SLC2A5	SNP	Missense_Mutation	1	9101751	G	A	36	43
BRCA	TCGA-AN-A0FN	SORL1	SNP	Silent	11	121466411	G	T	40	50
BRCA	TCGA-AN-A0FN	FGF9	SNP	Missense_Mutation	13	22255226	G	A	37	98
BRCA	TCGA-AN-A0FN	AKAP11	SNP	Missense_Mutation	13	42876409	G	A	36	73
BRCA	TCGA-AN-A0FN	ESRP2	SNP	Missense_Mutation	16	68266395	G	T	46	100
BRCA	TCGA-AN-A0FN	ZNF791	SNP	Missense_Mutation	19	12739046	G	A	37	51
BRCA	TCGA-AN-A0FN	RALGAPA2	SNP	Silent	20	20517353	G	A	36	69
BRCA	TCGA-AN-A0FN	LRRN4	SNP	Nonsense_Mutation	20	6025283	G	A	47	59
BRCA	TCGA-AN-A0FN	PPP1R3F	INS	Frame_Shift_Ins	23	49126982	-	G	50	70
BRCA	TCGA-AN-A0FN	CPA2	SNP	Missense_Mutation	7	129915037	C	A	21	94
BRCA	TCGA-AN-A0FN	BRAF	SNP	Missense_Mutation	7	140439646	T	C	64	91
BRCA	TCGA-AN-A0FN	MLL3	DEL	Frame_Shift_Del	7	151874090	G	-	47	49
BRCA	TCGA-AN-A0FN	ELN	SNP	Missense_Mutation	7	73452051	G	C	35	65
BRCA	TCGA-AN-A0FS	MAN1A2	SNP	Silent	1	117910860	C	T	24	69
BRCA	TCGA-AN-A0FS	LPGAT1	INS	Frame_Shift_Ins	1	211956599	-	CT	10	53
BRCA	TCGA-AN-A0FS	HNRNPH3	SNP	Splice_Site	10	70101734	G	A	35	77
BRCA	TCGA-AN-A0FS	CD3G	SNP	Missense_Mutation	11	118221279	G	A	46	78
BRCA	TCGA-AN-A0FS	TIRAP	SNP	Missense_Mutation	11	126162498	C	T	19	28
BRCA	TCGA-AN-A0FS	IGSF22	SNP	Silent	11	18735652	C	T	27	35
BRCA	TCGA-AN-A0FS	SSH3	SNP	Missense_Mutation	11	67076950	G	A	41	81
BRCA	TCGA-AN-A0FS	TBC1D10C	DEL	Frame_Shift_Del	11	67174406	C	-	26	64
BRCA	TCGA-AN-A0FS	TBX3	INS	Frame_Shift_Ins	12	115115457	-	T	44	98
BRCA	TCGA-AN-A0FS	PIWIL1	SNP	Missense_Mutation	12	130856048	C	G	30	98
BRCA	TCGA-AN-A0FS	AMN1	SNP	Silent	12	31862280	G	A	36	53
BRCA	TCGA-AN-A0FS	SDR9C7	SNP	Splice_site	12	57323336	G	A	38	61
BRCA	TCGA-AN-A0FS	PROX2	SNP	Silent	14	75321979	G	A	47	58
BRCA	TCGA-AN-A0FS	MAP1A	SNP	Nonsense_Mutation	15	43820168	C	A	29	84
BRCA	TCGA-AN-A0FS	ADAM10	SNP	Missense_Mutation	15	58974428	C	G	29	97
BRCA	TCGA-AN-A0FS	DNAH3	SNP	Missense_Mutation	16	21145740	G	A	40	62
BRCA	TCGA-AN-A0FS	ARHGAP17	SNP	Silent	16	24971256	C	G	22	58
BRCA	TCGA-AN-A0FS	CTCF	SNP	Missense_Mutation	16	67645507	A	G	13	92
BRCA	TCGA-AN-A0FS	CNTNAP4	SNP	Missense_Mutation	16	76350228	T	C	61	47
BRCA	TCGA-AN-A0FS	MYH13	SNP	Silent	17	10233721	C	T	32	61
BRCA	TCGA-AN-A0FS	CCL11	SNP	Missense_Mutation	17	32614626	G	A	41	45
BRCA	TCGA-AN-A0FS	KRTAP4-3	SNP	Silent	17	39324182	C	T	26	45
BRCA	TCGA-AN-A0FS	KRTAP4-3	SNP	Silent	17	39324272	C	T	26	46
BRCA	TCGA-AN-A0FS	LRRC46	DEL	Frame_Shift_Del	17	45914435	G	-	47	52
BRCA	TCGA-AN-A0FS	CACNA1G	SNP	Silent	17	48646555	T	C	63	53
BRCA	TCGA-AN-A0FS	GAS7	SNP	Missense_Mutation	17	9837520	G	A	38	79
BRCA	TCGA-AN-A0FS	KRI1	SNP	Missense_Mutation	19	10670359	G	A	38	66
BRCA	TCGA-AN-A0FS	FAM71E2	DEL	Frame_Shift_Del	19	55870662	G	-	47	53
BRCA	TCGA-AN-A0FS	GPR155	SNP	Splice_site	2	175335282	G	C	33	58
BRCA	TCGA-AN-A0FS	IRS1	DEL	Frame_Shift_Del	2	227661200	C	-	26	62
BRCA	TCGA-AN-A0FS	HDAC4	SNP	Missense_Mutation	2	240011772	C	T	22	82
BRCA	TCGA-AN-A0FS	MPHOSPH10	SNP	Missense_Mutation	2	71360269	G	A	45	65
BRCA	TCGA-AN-A0FS	ANKRD36C	DEL	Frame_Shift_Del	2	96587542	T	-	60	46
BRCA	TCGA-AN-A0FS	NINL	SNP	Missense_Mutation	20	25477324	C	T	30	88
BRCA	TCGA-AN-A0FS	ZNF295	SNP	Silent	21	43412963	C	T	20	70
BRCA	TCGA-AN-A0FS	ATP2B3	SNP	Silent	23	152822475	C	T	31	42
BRCA	TCGA-AN-A0FS	TXLNG	SNP	Missense_Mutation	23	16838307	A	T	12	91
BRCA	TCGA-AN-A0FS	NHS	SNP	Missense_Mutation	23	17744061	C	T	19	83
BRCA	TCGA-AN-A0FS	GPR64	SNP	Missense_Mutation	23	19028859	G	T	44	55
BRCA	TCGA-AN-A0FS	SAT1	SNP	Missense_Mutation	23	23801965	T	C	60	87
BRCA	TCGA-AN-A0FS	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-AN-A0FS	EPHA3	SNP	Silent	3	89391074	C	T	30	45
BRCA	TCGA-AN-A0FS	SLC25A31	SNP	Silent	4	128665852	T	C	52	60
BRCA	TCGA-AN-A0FS	ODZ2	SNP	Splice_site	5	167631625	C	T	19	54
BRCA	TCGA-AN-A0FS	FGFR4	DEL	Frame_Shift_Del	5	176524359	G	-	47	53
BRCA	TCGA-AN-A0FS	VNN1	SNP	Missense_Mutation	6	133004427	G	A	47	61
BRCA	TCGA-AN-A0FS	MLL5	SNP	Splice_Site	7	104714064	A	G	15	83
BRCA	TCGA-AN-A0FS	CCDC136	SNP	Missense_Mutation	7	128446752	G	A	46	54
BRCA	TCGA-AN-A0FS	TRPV6	SNP	Missense_Mutation	7	142575020	A	C	7	85
BRCA	TCGA-AN-A0FS	COL14A1	SNP	Silent	8	121209087	G	A	44	100
BRCA	TCGA-AN-A0FS	MTMR7	SNP	Missense_Mutation	8	17188758	C	T	24	99
BRCA	TCGA-AN-A0FS	SVEP1	SNP	Nonsense_Mutation	9	113169977	C	A	29	60
BRCA	TCGA-AN-A0FT	AMPD1	SNP	Splice_site	1	115226821	T	C	55	59
BRCA	TCGA-AN-A0FT	BCAN	SNP	Missense_Mutation	1	156622303	C	T	18	52
BRCA	TCGA-AN-A0FT	CD5L	SNP	Missense_Mutation	1	157805682	C	G	29	50
BRCA	TCGA-AN-A0FT	PLA2G4A	SNP	Splice_Site	1	186880523	T	A	59	74
BRCA	TCGA-AN-A0FT	CAMSAP2	SNP	Missense_Mutation	1	200816774	T	G	52	90
BRCA	TCGA-AN-A0FT	KIF21B	SNP	Silent	1	200973933	G	A	38	63
BRCA	TCGA-AN-A0FT	NFASC	INS	Frame_Shift_Ins	1	204937936	-	AT	33	65
BRCA	TCGA-AN-A0FT	USH2A	SNP	Missense_Mutation	1	216251659	G	A	33	50
BRCA	TCGA-AN-A0FT	OBSCN	SNP	Missense_Mutation	1	228547542	G	A	39	44
BRCA	TCGA-AN-A0FT	KIF26B	SNP	Silent	1	245850728	C	T	19	53
BRCA	TCGA-AN-A0FT	PRKAA2	SNP	Missense_Mutation	1	57169714	G	A	40	66
BRCA	TCGA-AN-A0FT	LPPR4	SNP	Silent	1	99771528	G	A	38	16
BRCA	TCGA-AN-A0FT	CNNM2	SNP	Missense_Mutation	10	104816684	G	A	38	88
BRCA	TCGA-AN-A0FT	SORCS1	SNP	Splice_Site	10	108339234	T	G	56	90
BRCA	TCGA-AN-A0FT	EXOC6	INS	Splice_Site	10	94688180	-	T	44	96
BRCA	TCGA-AN-A0FT	CBL	SNP	Missense_Mutation	11	119103359	T	C	56	93
BRCA	TCGA-AN-A0FT	TRAF6	SNP	Missense_Mutation	11	36511852	C	T	32	97
BRCA	TCGA-AN-A0FT	SMTNL1	SNP	Missense_Mutation	11	57308982	C	A	28	50
BRCA	TCGA-AN-A0FT	GANAB	SNP	Missense_Mutation	11	62396294	G	A	35	51
BRCA	TCGA-AN-A0FT	SYTL2	SNP	Missense_Mutation	11	85431982	G	C	41	74
BRCA	TCGA-AN-A0FT	TRPV4	SNP	Missense_Mutation	12	110230552	C	T	19	83
BRCA	TCGA-AN-A0FT	NR4A1	SNP	Silent	12	52448565	C	G	32	51
BRCA	TCGA-AN-A0FT	TIMELESS	SNP	Missense_Mutation	12	56822802	C	T	31	99
BRCA	TCGA-AN-A0FT	LRP1	SNP	Silent	12	57595392	C	T	23	16
BRCA	TCGA-AN-A0FT	MRPL51	SNP	Silent	12	6602122	G	T	37	45
BRCA	TCGA-AN-A0FT	PHLDA1	SNP	Missense_Mutation	12	76424354	C	G	23	74
BRCA	TCGA-AN-A0FT	A2ML1	SNP	Silent	12	9000231	G	A	38	16
BRCA	TCGA-AN-A0FT	FLT3	SNP	Silent	13	28602382	G	A	45	61
BRCA	TCGA-AN-A0FT	C15orf52	SNP	Missense_Mutation	15	40627724	C	G	30	45
BRCA	TCGA-AN-A0FT	ZFP106	SNP	Nonsense_Mutation	15	42734373	G	A	45	65
BRCA	TCGA-AN-A0FT	LEO1	SNP	Missense_Mutation	15	52244140	C	T	29	100
BRCA	TCGA-AN-A0FT	IREB2	SNP	Missense_Mutation	15	78757626	G	A	45	100
BRCA	TCGA-AN-A0FT	ST20	SNP	Silent	15	80191306	C	A	31	50
BRCA	TCGA-AN-A0FT	BNC1	SNP	Silent	15	83926275	C	T	19	39
BRCA	TCGA-AN-A0FT	CRAMP1L	SNP	Silent	16	1724028	C	G	29	38
BRCA	TCGA-AN-A0FT	APOBR	SNP	Silent	16	28507283	G	A	43	45
BRCA	TCGA-AN-A0FT	LOC100294345	SNP	Silent	17	1577384	C	T	22	49
BRCA	TCGA-AN-A0FT	DHRS13	SNP	Missense_Mutation	17	27228017	C	A	28	79
BRCA	TCGA-AN-A0FT	KRTAP4-16P	SNP	Missense_Mutation	17	39258148	T	G	59	46
BRCA	TCGA-AN-A0FT	SSTR2	SNP	Missense_Mutation	17	71165918	A	G	11	71
BRCA	TCGA-AN-A0FT	TP53	SNP	Missense_Mutation	17	7578271	T	C	51	76
BRCA	TCGA-AN-A0FT	ABR	SNP	Missense_Mutation	17	953786	C	A	20	52
BRCA	TCGA-AN-A0FT	COLEC12	SNP	Nonsense_Mutation	18	357409	C	A	22	98
BRCA	TCGA-AN-A0FT	OR10H2	SNP	Missense_Mutation	19	15838899	G	A	39	53
BRCA	TCGA-AN-A0FT	ZNF85	SNP	Silent	19	21131734	C	G	29	36
BRCA	TCGA-AN-A0FT	TLE6	SNP	Missense_Mutation	19	2994071	C	T	23	52
BRCA	TCGA-AN-A0FT	CYP2S1	SNP	Silent	19	41704619	C	T	19	40
BRCA	TCGA-AN-A0FT	PTPRS	SNP	Missense_Mutation	19	5212055	C	T	27	89
BRCA	TCGA-AN-A0FT	ZNF324	SNP	Missense_Mutation	19	58980577	T	C	57	51
BRCA	TCGA-AN-A0FT	KANK3	SNP	Silent	19	8399296	G	C	45	55
BRCA	TCGA-AN-A0FT	IWS1	SNP	Silent	2	128253598	G	A	37	37
BRCA	TCGA-AN-A0FT	KIAA1715	SNP	Missense_Mutation	2	176857117	T	A	64	50
BRCA	TCGA-AN-A0FT	PLEKHM3	SNP	Nonsense_Mutation	2	208841408	G	A	40	65
BRCA	TCGA-AN-A0FT	CTDSP1	SNP	Missense_Mutation	2	219266840	C	T	22	63
BRCA	TCGA-AN-A0FT	LGALSL	SNP	Missense_Mutation	2	64683480	G	A	37	82
BRCA	TCGA-AN-A0FT	DNAH6	SNP	Missense_Mutation	2	84940260	G	C	45	62
BRCA	TCGA-AN-A0FT	RIN2	SNP	Missense_Mutation	20	19945639	C	G	30	70
BRCA	TCGA-AN-A0FT	ERG	SNP	Silent	21	39817365	G	A	45	60
BRCA	TCGA-AN-A0FT	KRTAP10-2	SNP	Missense_Mutation	21	45970680	G	C	44	56
BRCA	TCGA-AN-A0FT	KRTAP10-7	SNP	Silent	21	46020575	C	T	27	40
BRCA	TCGA-AN-A0FT	BCR	SNP	Missense_Mutation	22	23524047	G	C	33	62
BRCA	TCGA-AN-A0FT	VGLL1	SNP	Missense_Mutation	23	135630756	A	T	8	50
BRCA	TCGA-AN-A0FT	DMD	SNP	Nonsense_Mutation	23	32364092	G	A	46	70
BRCA	TCGA-AN-A0FT	SHROOM2	INS	Frame_Shift_Ins	23	9864432	-	C	42	48
BRCA	TCGA-AN-A0FT	ARHGEF26	SNP	Missense_Mutation	3	153943651	C	T	30	87
BRCA	TCGA-AN-A0FT	PLCH1	SNP	Silent	3	155303908	C	A	29	57
BRCA	TCGA-AN-A0FT	TTC14	SNP	Missense_Mutation	3	180322642	G	A	33	64
BRCA	TCGA-AN-A0FT	KCNH8	SNP	Nonsense_Mutation	3	19575051	G	A	41	73
BRCA	TCGA-AN-A0FT	PDS5A	SNP	Missense_Mutation	4	39924337	T	C	51	93
BRCA	TCGA-AN-A0FT	SPARCL1	SNP	Missense_Mutation	4	88414874	C	T	29	72
BRCA	TCGA-AN-A0FT	TSLP	SNP	Missense_Mutation	5	110411704	C	A	32	62
BRCA	TCGA-AN-A0FT	KCNN2	SNP	Nonsense_Mutation	5	113740533	G	A	41	100
BRCA	TCGA-AN-A0FT	TRPC7	SNP	Missense_Mutation	5	135692897	C	T	23	86
BRCA	TCGA-AN-A0FT	PCDHA9	SNP	Missense_Mutation	5	140228577	C	T	26	82
BRCA	TCGA-AN-A0FT	NHP2	SNP	Missense_Mutation	5	177576773	A	G	14	88
BRCA	TCGA-AN-A0FT	AHRR	SNP	Missense_Mutation	5	428000	C	T	27	76
BRCA	TCGA-AN-A0FT	ADAMTS16	SNP	Silent	5	5186343	C	T	19	47
BRCA	TCGA-AN-A0FT	NEDD9	SNP	Nonsense_Mutation	6	11188468	G	A	46	80
BRCA	TCGA-AN-A0FT	HEY2	SNP	Missense_Mutation	6	126080572	C	T	30	84
BRCA	TCGA-AN-A0FT	ELOVL5	DEL	Frame_Shift_Del	6	53139934	C	-	25	100
BRCA	TCGA-AN-A0FT	C6orf165	SNP	Silent	6	88170826	G	A	37	39
BRCA	TCGA-AN-A0FT	AGFG2	SNP	Missense_Mutation	7	100151824	G	A	33	87
BRCA	TCGA-AN-A0FT	TRBC1	SNP	Missense_Mutation	7	142423558	G	A	45	52
BRCA	TCGA-AN-A0FT	GIMAP8	SNP	Missense_Mutation	7	150171135	G	A	37	51
BRCA	TCGA-AN-A0FT	DPP6	SNP	Missense_Mutation	7	154172083	G	T	33	71
BRCA	TCGA-AN-A0FT	BAIAP2L1	SNP	Silent	7	97984400	G	C	47	57
BRCA	TCGA-AN-A0FT	UBR5	SNP	Missense_Mutation	8	103298762	T	A	54	93
BRCA	TCGA-AN-A0FT	MOS	SNP	Nonsense_Mutation	8	57026280	G	A	46	71
BRCA	TCGA-AN-A0FT	ZFHX4	SNP	Missense_Mutation	8	77616630	G	A	46	97
BRCA	TCGA-AN-A0FT	ATP6V0D2	SNP	Missense_Mutation	8	87165053	G	C	45	69
BRCA	TCGA-AN-A0FT	C9orf91	INS	Frame_Shift_Ins	9	117405515	-	C	54	45
BRCA	TCGA-AN-A0FT	CCDC171	SNP	Missense_Mutation	9	15744698	C	A	18	86
BRCA	TCGA-AN-A0FT	DDX58	SNP	Silent	9	32481365	G	C	43	10
BRCA	TCGA-AN-A0FT	DDX58	SNP	Silent	9	32481395	G	A	48	58
BRCA	TCGA-AN-A0FV	SLC6A17	SNP	Missense_Mutation	1	110738234	G	A	40	57
BRCA	TCGA-AN-A0FV	MAGI3	SNP	Missense_Mutation	1	114226131	G	A	37	50
BRCA	TCGA-AN-A0FV	KRTCAP2	SNP	Silent	1	155145340	G	C	33	38
BRCA	TCGA-AN-A0FV	USP21	SNP	Missense_Mutation	1	161133349	G	T	45	68
BRCA	TCGA-AN-A0FV	LOC100288921	SNP	Missense_Mutation	1	17197929	G	A	37	52
BRCA	TCGA-AN-A0FV	SERPINC1	DEL	Frame_Shift_Del	1	173881074	AG	-	15	90
BRCA	TCGA-AN-A0FV	HMCN1	SNP	Missense_Mutation	1	185946924	C	T	30	97
BRCA	TCGA-AN-A0FV	ZBTB41	SNP	Silent	1	197169214	G	A	40	50
BRCA	TCGA-AN-A0FV	LHX9	SNP	Missense_Mutation	1	197889297	T	C	61	89
BRCA	TCGA-AN-A0FV	IKBKE	SNP	Silent	1	206658371	C	T	20	67
BRCA	TCGA-AN-A0FV	CR2	SNP	Silent	1	207651345	G	A	47	51
BRCA	TCGA-AN-A0FV	WDR26	SNP	Missense_Mutation	1	224592164	C	G	29	98
BRCA	TCGA-AN-A0FV	PGBD5	SNP	Missense_Mutation	1	230492905	G	A	40	70
BRCA	TCGA-AN-A0FV	RYR2	SNP	Silent	1	237870517	C	A	29	66
BRCA	TCGA-AN-A0FV	RYR2	SNP	Missense_Mutation	1	237924301	C	T	32	88
BRCA	TCGA-AN-A0FV	GBP6	SNP	Missense_Mutation	1	89850894	A	G	14	29
BRCA	TCGA-AN-A0FV	MGMT	SNP	Silent	10	131506231	G	A	45	71
BRCA	TCGA-AN-A0FV	STAM	SNP	Missense_Mutation	10	17702520	G	A	48	95
BRCA	TCGA-AN-A0FV	USP54	SNP	Silent	10	75258501	A	G	8	52
BRCA	TCGA-AN-A0FV	OR10G7	SNP	Missense_Mutation	11	123909455	G	C	41	53
BRCA	TCGA-AN-A0FV	OPCML	SNP	Splice_site	11	133402219	T	C	50	76
BRCA	TCGA-AN-A0FV	OR8K1	SNP	Silent	11	56114084	G	A	45	50
BRCA	TCGA-AN-A0FV	MED13L	DEL	Frame_Shift_Del	12	116457650	TTCT	-	56	44
BRCA	TCGA-AN-A0FV	SLC15A4	INS	Frame_Shift_Ins	12	129293488	-	A	21	100
BRCA	TCGA-AN-A0FV	ERBB3	SNP	Missense_Mutation	12	56495592	A	C	9	84
BRCA	TCGA-AN-A0FV	ARHGEF25	SNP	Missense_Mutation	12	58009443	G	A	41	72
BRCA	TCGA-AN-A0FV	ARHGEF25	SNP	Missense_Mutation	12	58010139	G	C	41	61
BRCA	TCGA-AN-A0FV	GPC6	SNP	Missense_Mutation	13	94197641	A	G	6	76
BRCA	TCGA-AN-A0FV	DHRS4L2	SNP	Missense_Mutation	14	24470124	C	T	21	81
BRCA	TCGA-AN-A0FV	SEC23A	SNP	Missense_Mutation	14	39532596	A	T	8	63
BRCA	TCGA-AN-A0FV	RFX7	SNP	Nonsense_Mutation	15	56386801	G	C	45	98
BRCA	TCGA-AN-A0FV	GCNT3	SNP	Silent	15	59910998	C	T	29	54
BRCA	TCGA-AN-A0FV	RBBP6	SNP	Missense_Mutation	16	24567161	G	C	35	100
BRCA	TCGA-AN-A0FV	CNOT1	SNP	Missense_Mutation	16	58617082	C	G	29	100
BRCA	TCGA-AN-A0FV	B9D1	SNP	Missense_Mutation	17	19246827	C	A	21	52
BRCA	TCGA-AN-A0FV	FOXN1	SNP	Missense_Mutation	17	26861358	G	A	37	100
BRCA	TCGA-AN-A0FV	DHRS11	SNP	Silent	17	34956183	G	A	34	49
BRCA	TCGA-AN-A0FV	CDK12	SNP	Silent	17	37618634	C	A	31	61
BRCA	TCGA-AN-A0FV	PSMD3	SNP	Silent	17	38140650	C	G	29	54
BRCA	TCGA-AN-A0FV	CACNA1G	SNP	Missense_Mutation	17	48695611	C	T	26	55
BRCA	TCGA-AN-A0FV	BZRAP1	SNP	Silent	17	56395674	G	A	41	54
BRCA	TCGA-AN-A0FV	CASKIN2	SNP	Splice_site	17	73499334	C	T	26	49
BRCA	TCGA-AN-A0FV	TP53	SNP	Missense_Mutation	17	7577526	A	G	11	74
BRCA	TCGA-AN-A0FV	ABR	SNP	Missense_Mutation	17	995066	C	T	27	100
BRCA	TCGA-AN-A0FV	MC4R	SNP	Missense_Mutation	18	58038781	A	C	15	74
BRCA	TCGA-AN-A0FV	ZNF844	SNP	Missense_Mutation	19	12187501	G	C	45	49
BRCA	TCGA-AN-A0FV	ATCAY	SNP	Missense_Mutation	19	3905527	T	G	58	85
BRCA	TCGA-AN-A0FV	TMEM163	SNP	Missense_Mutation	2	135470791	C	G	26	73
BRCA	TCGA-AN-A0FV	PLCL1	SNP	Silent	2	198948973	G	A	45	54
BRCA	TCGA-AN-A0FV	FN1	SNP	Silent	2	216271160	C	T	27	48
BRCA	TCGA-AN-A0FV	COL6A3	SNP	Missense_Mutation	2	238275816	C	G	32	71
BRCA	TCGA-AN-A0FV	C2orf44	SNP	Nonsense_Mutation	2	24261104	G	A	45	65
BRCA	TCGA-AN-A0FV	CCDC88A	DEL	Frame_Shift_Del	2	55563838	CA	-	29	51
BRCA	TCGA-AN-A0FV	PTPRT	SNP	Missense_Mutation	20	41420103	G	C	33	100
BRCA	TCGA-AN-A0FV	PPDPF	SNP	Silent	20	62152893	C	T	28	72
BRCA	TCGA-AN-A0FV	TOMM22	SNP	Missense_Mutation	22	39079782	G	A	41	92
BRCA	TCGA-AN-A0FV	TBC1D22A	SNP	Missense_Mutation	22	47393596	C	T	23	76
BRCA	TCGA-AN-A0FV	EGFL6	SNP	Silent	23	13618176	C	T	29	60
BRCA	TCGA-AN-A0FV	SYAP1	SNP	Missense_Mutation	23	16775411	G	C	33	63
BRCA	TCGA-AN-A0FV	ALAS2	SNP	Missense_Mutation	23	55046896	C	T	27	95
BRCA	TCGA-AN-A0FV	OXNAD1	SNP	Missense_Mutation	3	16343316	G	A	45	50
BRCA	TCGA-AN-A0FV	DHX30	SNP	Nonsense_Mutation	3	47890693	C	T	25	94
BRCA	TCGA-AN-A0FV	C3orf71	SNP	Missense_Mutation	3	48956003	C	T	32	50
BRCA	TCGA-AN-A0FV	USP19	SNP	Silent	3	49148221	G	T	37	45
BRCA	TCGA-AN-A0FV	ENSG00000187900	SNP	Missense_Mutation	3	97958040	T	A	60	59
BRCA	TCGA-AN-A0FV	FAT1	SNP	Missense_Mutation	4	187532774	G	C	42	85
BRCA	TCGA-AN-A0FV	N4BP2	SNP	Missense_Mutation	4	40104561	A	G	4	51
BRCA	TCGA-AN-A0FV	H2AFY	SNP	Silent	5	134705192	G	A	45	63
BRCA	TCGA-AN-A0FV	NPR3	SNP	Missense_Mutation	5	32712623	C	G	31	59
BRCA	TCGA-AN-A0FV	TNPO1	DEL	Frame_Shift_Del	5	72144299	A	-	6	84
BRCA	TCGA-AN-A0FV	ALDH8A1	SNP	Missense_Mutation	6	135263550	C	A	20	62
BRCA	TCGA-AN-A0FV	ZKSCAN4	SNP	Missense_Mutation	6	28213028	G	C	33	61
BRCA	TCGA-AN-A0FV	TDRD6	SNP	Silent	6	46657944	G	A	39	2
BRCA	TCGA-AN-A0FV	KHDC3L	SNP	Missense_Mutation	6	74072594	G	A	45	59
BRCA	TCGA-AN-A0FV	DGKI	SNP	Missense_Mutation	7	137270022	C	T	27	100
BRCA	TCGA-AN-A0FV	LMTK2	SNP	Missense_Mutation	7	97821026	G	A	41	82
BRCA	TCGA-AN-A0FV	ANGPT1	SNP	Silent	8	108509559	C	A	23	56
BRCA	TCGA-AN-A0FV	ST18	SNP	Missense_Mutation	8	53084705	T	G	62	65
BRCA	TCGA-AN-A0FV	TRIM55	SNP	Missense_Mutation	8	67064633	A	C	9	53
BRCA	TCGA-AN-A0FV	TTLL11	SNP	Silent	9	124751816	G	C	35	52
BRCA	TCGA-AN-A0FV	RAPGEF1	SNP	Missense_Mutation	9	134501378	A	C	1	87
BRCA	TCGA-AN-A0FV	FGD3	SNP	Missense_Mutation	9	95765284	C	A	18	60
BRCA	TCGA-AN-A0FW	DENND2C	SNP	Missense_Mutation	1	115168526	T	A	63	80
BRCA	TCGA-AN-A0FW	FCRL2	SNP	Missense_Mutation	1	157739898	G	C	43	73
BRCA	TCGA-AN-A0FW	F5	SNP	Missense_Mutation	1	169510162	C	T	20	54
BRCA	TCGA-AN-A0FW	FMO4	SNP	Missense_Mutation	1	171293331	G	A	41	67
BRCA	TCGA-AN-A0FW	CACNA1E	SNP	Missense_Mutation	1	181685256	T	C	54	88
BRCA	TCGA-AN-A0FW	TPR	SNP	Missense_Mutation	1	186305686	C	A	24	69
BRCA	TCGA-AN-A0FW	OR6F1	SNP	Missense_Mutation	1	247875610	C	A	18	35
BRCA	TCGA-AN-A0FW	OR2L2	SNP	Missense_Mutation	1	248202323	G	T	46	52
BRCA	TCGA-AN-A0FW	PER3	SNP	Missense_Mutation	1	7858698	T	A	54	85
BRCA	TCGA-AN-A0FW	BNIP3	SNP	Silent	10	133784252	G	C	45	81
BRCA	TCGA-AN-A0FW	AVPI1	SNP	Missense_Mutation	10	99437574	C	A	21	41
BRCA	TCGA-AN-A0FW	NXPE4	SNP	Silent	11	114453663	C	A	29	51
BRCA	TCGA-AN-A0FW	AMBRA1	SNP	Missense_Mutation	11	46430198	G	A	34	66
BRCA	TCGA-AN-A0FW	OR5M1	SNP	Missense_Mutation	11	56380447	A	C	15	71
BRCA	TCGA-AN-A0FW	OR52N4	SNP	Missense_Mutation	11	5776082	G	T	48	51
BRCA	TCGA-AN-A0FW	FAM168A	SNP	Nonsense_Mutation	11	73141811	G	C	44	57
BRCA	TCGA-AN-A0FW	TMEM132D	SNP	Missense_Mutation	12	129559313	T	A	61	75
BRCA	TCGA-AN-A0FW	ZNF268	DEL	In_Frame_Del	12	133780972	CTT	-	24	43
BRCA	TCGA-AN-A0FW	SYT10	SNP	Missense_Mutation	12	33592394	C	T	31	71
BRCA	TCGA-AN-A0FW	ARID2	SNP	Missense_Mutation	12	46287254	T	G	63	60
BRCA	TCGA-AN-A0FW	TBK1	SNP	Missense_Mutation	12	64849731	A	T	10	51
BRCA	TCGA-AN-A0FW	TMTC4	SNP	Missense_Mutation	13	101289953	G	A	33	25
BRCA	TCGA-AN-A0FW	MYO16	SNP	Splice_site	13	109437984	C	A	28	87
BRCA	TCGA-AN-A0FW	ANKRD10	SNP	Missense_Mutation	13	111532189	C	A	20	76
BRCA	TCGA-AN-A0FW	UPF3A	SNP	Missense_Mutation	13	115052027	G	A	48	58
BRCA	TCGA-AN-A0FW	DOCK9	SNP	Missense_Mutation	13	99536130	C	A	22	97
BRCA	TCGA-AN-A0FW	LOC653720	SNP	Missense_Mutation	15	28947208	C	G	28	50
BRCA	TCGA-AN-A0FW	ZNF770	SNP	Missense_Mutation	15	35274018	C	G	21	99
BRCA	TCGA-AN-A0FW	AP4E1	SNP	Missense_Mutation	15	51250849	C	T	17	50
BRCA	TCGA-AN-A0FW	CCPG1	DEL	Frame_Shift_Del	15	55652817	TC	-	62	74
BRCA	TCGA-AN-A0FW	BNC1	SNP	Missense_Mutation	15	83926261	C	T	31	100
BRCA	TCGA-AN-A0FW	XYLT1	SNP	Missense_Mutation	16	17228421	C	T	31	98
BRCA	TCGA-AN-A0FW	SPSB3	SNP	Silent	16	1831446	G	A	37	43
BRCA	TCGA-AN-A0FW	ATP2A1	SNP	Nonsense_Mutation	16	28889996	G	T	41	92
BRCA	TCGA-AN-A0FW	TAOK2	SNP	Silent	16	29994057	C	T	18	65
BRCA	TCGA-AN-A0FW	ABAT	SNP	Missense_Mutation	16	8860107	G	A	41	73
BRCA	TCGA-AN-A0FW	MYH3	SNP	Silent	17	10547934	A	G	8	52
BRCA	TCGA-AN-A0FW	OR3A3	SNP	Missense_Mutation	17	3324376	T	A	51	66
BRCA	TCGA-AN-A0FW	OR1E2	SNP	Silent	17	3337085	C	A	25	42
BRCA	TCGA-AN-A0FW	STAT5A	SNP	Nonsense_Mutation	17	40453429	G	T	45	97
BRCA	TCGA-AN-A0FW	ST8SIA5	SNP	Silent	18	44336460	C	T	23	45
BRCA	TCGA-AN-A0FW	NWD1	SNP	Silent	19	16860608	G	T	46	49
BRCA	TCGA-AN-A0FW	NFIC	SNP	Nonsense_Mutation	19	3381782	C	T	25	92
BRCA	TCGA-AN-A0FW	PRX	SNP	Silent	19	40902117	G	C	33	44
BRCA	TCGA-AN-A0FW	GRIK5	SNP	Missense_Mutation	19	42566761	C	G	20	65
BRCA	TCGA-AN-A0FW	GP6	SNP	Silent	19	55525717	G	T	35	50
BRCA	TCGA-AN-A0FW	FAM71E2	SNP	Silent	19	55871345	G	C	35	32
BRCA	TCGA-AN-A0FW	CATSPERD	SNP	Missense_Mutation	19	5749187	T	G	49	56
BRCA	TCGA-AN-A0FW	IL18RAP	SNP	Missense_Mutation	2	103040529	C	A	18	39
BRCA	TCGA-AN-A0FW	BAZ2B	SNP	Missense_Mutation	2	160303435	T	C	60	72
BRCA	TCGA-AN-A0FW	ITGAV	SNP	Silent	2	187516748	G	T	48	38
BRCA	TCGA-AN-A0FW	PLCL1	SNP	Missense_Mutation	2	198948674	C	T	31	77
BRCA	TCGA-AN-A0FW	MAPRE3	SNP	Missense_Mutation	2	27247108	C	G	18	55
BRCA	TCGA-AN-A0FW	BMP10	SNP	Missense_Mutation	2	69092930	C	T	25	100
BRCA	TCGA-AN-A0FW	VWA3B	SNP	Silent	2	98834364	C	A	18	81
BRCA	TCGA-AN-A0FW	EMILIN3	SNP	Nonsense_Mutation	20	39993701	C	T	22	80
BRCA	TCGA-AN-A0FW	ZFP64	SNP	Missense_Mutation	20	50768782	G	T	41	68
BRCA	TCGA-AN-A0FW	CYP24A1	SNP	Silent	20	52782317	C	A	22	34
BRCA	TCGA-AN-A0FW	GNAS	SNP	Missense_Mutation	20	57428536	G	A	35	40
BRCA	TCGA-AN-A0FW	SYCP2	SNP	Nonsense_Mutation	20	58453083	C	A	22	51
BRCA	TCGA-AN-A0FW	TTC28	SNP	Missense_Mutation	22	28503210	C	T	31	97
BRCA	TCGA-AN-A0FW	PPEF1	SNP	Missense_Mutation	23	18822013	A	C	16	53
BRCA	TCGA-AN-A0FW	ITIH6	SNP	Missense_Mutation	23	54785405	C	G	26	58
BRCA	TCGA-AN-A0FW	SENP7	SNP	Missense_Mutation	3	101046584	G	A	43	73
BRCA	TCGA-AN-A0FW	DZIP3	SNP	Missense_Mutation	3	108361332	C	T	23	58
BRCA	TCGA-AN-A0FW	MED12L	SNP	Silent	3	151127066	G	A	38	49
BRCA	TCGA-AN-A0FW	VWA5B2	SNP	Silent	3	183952157	G	A	43	60
BRCA	TCGA-AN-A0FW	DLG1	SNP	Missense_Mutation	3	197024060	G	C	46	58
BRCA	TCGA-AN-A0FW	RBMS3	SNP	Missense_Mutation	3	29804454	A	T	16	68
BRCA	TCGA-AN-A0FW	DNAH12	SNP	Missense_Mutation	3	57330424	C	G	21	99
BRCA	TCGA-AN-A0FW	EGF	SNP	Missense_Mutation	4	110902030	A	G	1	79
BRCA	TCGA-AN-A0FW	G3BP2	SNP	Missense_Mutation	4	76573867	C	A	31	94
BRCA	TCGA-AN-A0FW	OR2Y1	SNP	Silent	5	180166708	C	T	29	49
BRCA	TCGA-AN-A0FW	DROSHA	SNP	Missense_Mutation	5	31526930	T	G	63	62
BRCA	TCGA-AN-A0FW	HCN1	SNP	Splice_site	5	45267191	C	A	24	100
BRCA	TCGA-AN-A0FW	ZSWIM6	SNP	Missense_Mutation	5	60768572	C	A	19	54
BRCA	TCGA-AN-A0FW	JMY	SNP	Missense_Mutation	5	78610274	G	C	33	49
BRCA	TCGA-AN-A0FW	HIST1H3J	SNP	Missense_Mutation	6	27858488	T	C	64	87
BRCA	TCGA-AN-A0FW	EYS	SNP	Missense_Mutation	6	66204693	G	A	35	55
BRCA	TCGA-AN-A0FW	CDK13	SNP	Missense_Mutation	7	40038962	T	A	49	92
BRCA	TCGA-AN-A0FW	CDK6	SNP	Missense_Mutation	7	92355060	G	T	44	77
BRCA	TCGA-AN-A0FW	PILRB	SNP	Missense_Mutation	7	99956435	A	G	8	46
BRCA	TCGA-AN-A0FW	FAM160B2	SNP	Silent	8	21955752	C	T	23	34
BRCA	TCGA-AN-A0FW	HOOK3	SNP	Splice_site	8	42873640	A	G	15	91
BRCA	TCGA-AN-A0FW	SDCBP	SNP	Silent	8	59492212	G	A	35	62
BRCA	TCGA-AN-A0FW	ZFHX4	SNP	Missense_Mutation	8	77618443	C	T	32	100
BRCA	TCGA-AN-A0FW	NUP188	SNP	Splice_Site	9	131760904	T	A	59	85
BRCA	TCGA-AN-A0FW	ARHGEF39	SNP	Splice_site	9	35663071	C	G	22	61
BRCA	TCGA-AN-A0FW	KANK1	SNP	Silent	9	712443	C	T	31	46
BRCA	TCGA-AN-A0FX	FLG2	SNP	Silent	1	152329344	T	C	56	56
BRCA	TCGA-AN-A0FX	LCE1E	SNP	Missense_Mutation	1	152759900	C	G	30	61
BRCA	TCGA-AN-A0FX	RRNAD1	SNP	Missense_Mutation	1	156706431	T	G	51	52
BRCA	TCGA-AN-A0FX	ATP1A4	SNP	Missense_Mutation	1	160141540	G	T	41	92
BRCA	TCGA-AN-A0FX	CACNA1E	SNP	Missense_Mutation	1	181693635	G	A	38	98
BRCA	TCGA-AN-A0FX	UBR4	SNP	Missense_Mutation	1	19524455	C	G	20	84
BRCA	TCGA-AN-A0FX	TMEM9	SNP	Missense_Mutation	1	201112979	G	C	36	97
BRCA	TCGA-AN-A0FX	LGR6	SNP	Missense_Mutation	1	202287842	C	T	19	67
BRCA	TCGA-AN-A0FX	OR2G2	SNP	Silent	1	247752246	C	A	21	50
BRCA	TCGA-AN-A0FX	NCMAP	SNP	Missense_Mutation	1	24921959	T	G	62	73
BRCA	TCGA-AN-A0FX	ST3GAL3	SNP	Missense_Mutation	1	44365341	C	T	26	98
BRCA	TCGA-AN-A0FX	YIPF1	SNP	Missense_Mutation	1	54325811	C	A	25	80
BRCA	TCGA-AN-A0FX	VAMP3	SNP	Missense_Mutation	1	7837293	G	A	40	89
BRCA	TCGA-AN-A0FX	TMEM201	DEL	Frame_Shift_Del	1	9657089	C	-	26	91
BRCA	TCGA-AN-A0FX	ZRANB1	SNP	Missense_Mutation	10	126662834	C	G	20	67
BRCA	TCGA-AN-A0FX	DHX32	SNP	Missense_Mutation	10	127527584	C	G	23	97
BRCA	TCGA-AN-A0FX	DNAJC9	SNP	Missense_Mutation	10	75003261	C	G	23	72
BRCA	TCGA-AN-A0FX	ATP5C1	SNP	Missense_Mutation	10	7839114	G	T	34	99
BRCA	TCGA-AN-A0FX	MYOF	INS	Frame_Shift_Ins	10	95169434	-	C	42	61
BRCA	TCGA-AN-A0FX	SF3B2	INS	Frame_Shift_Ins	11	65824744	-	C	54	49
BRCA	TCGA-AN-A0FX	INPPL1	SNP	Nonsense_Mutation	11	71939422	C	T	21	63
BRCA	TCGA-AN-A0FX	WNT11	DEL	Frame_Shift_Del	11	75917423	G	-	38	58
BRCA	TCGA-AN-A0FX	PIDD	INS	Frame_Shift_Ins	11	803200	-	G	23	53
BRCA	TCGA-AN-A0FX	DTX1	SNP	Missense_Mutation	12	113496004	C	G	19	61
BRCA	TCGA-AN-A0FX	SPPL3	SNP	Missense_Mutation	12	121202863	C	T	23	97
BRCA	TCGA-AN-A0FX	ERBB3	SNP	Missense_Mutation	12	56486553	G	C	46	66
BRCA	TCGA-AN-A0FX	ATP2B1	SNP	Missense_Mutation	12	89996873	T	C	52	91
BRCA	TCGA-AN-A0FX	EFNB2	SNP	Missense_Mutation	13	107187297	C	A	30	67
BRCA	TCGA-AN-A0FX	TEP1	SNP	Missense_Mutation	14	20845601	C	A	26	67
BRCA	TCGA-AN-A0FX	KLHDC1	DEL	Splice_site	14	50199423	ATTACTATTAATGGAGAAAGCC	-	12	68
BRCA	TCGA-AN-A0FX	HERC2	SNP	Missense_Mutation	15	28511056	G	A	46	96
BRCA	TCGA-AN-A0FX	RASGRF1	SNP	Splice_site	15	79350823	G	T	34	60
BRCA	TCGA-AN-A0FX	AKAP13	SNP	Missense_Mutation	15	86122519	G	A	48	51
BRCA	TCGA-AN-A0FX	MPV17L	SNP	Missense_Mutation	16	15501863	C	T	18	59
BRCA	TCGA-AN-A0FX	LOC728888	SNP	Silent	16	29394387	T	C	63	50
BRCA	TCGA-AN-A0FX	CCDC79	SNP	Silent	16	66820029	T	G	55	60
BRCA	TCGA-AN-A0FX	LRRC36	SNP	Missense_Mutation	16	67381482	A	T	11	73
BRCA	TCGA-AN-A0FX	TMCO7	DEL	In_Frame_Del	16	68936373	GGT	-	35	78
BRCA	TCGA-AN-A0FX	MAP2K3	SNP	Missense_Mutation	17	21205521	G	T	41	99
BRCA	TCGA-AN-A0FX	CAMKK1	DEL	Frame_Shift_Del	17	3769233	G	-	38	49
BRCA	TCGA-AN-A0FX	KRTAP2-2	SNP	Missense_Mutation	17	39211310	G	A	38	64
BRCA	TCGA-AN-A0FX	JUP	DEL	Frame_Shift_Del	17	39777034	AG	-	7	88
BRCA	TCGA-AN-A0FX	DGKE	INS	Frame_Shift_Ins	17	54912172	-	G	27	63
BRCA	TCGA-AN-A0FX	TP53	SNP	Missense_Mutation	17	7577539	G	A	39	60
BRCA	TCGA-AN-A0FX	AQP4	SNP	Missense_Mutation	18	24436200	G	A	33	98
BRCA	TCGA-AN-A0FX	ZNF823	SNP	Missense_Mutation	19	11832906	A	T	2	53
BRCA	TCGA-AN-A0FX	TLE6	DEL	Splice_Site	19	2987237	GT	-	40	71
BRCA	TCGA-AN-A0FX	CD79A	INS	Splice_Site	19	42383057	-	A	17	73
BRCA	TCGA-AN-A0FX	CIC	SNP	Silent	19	42794462	C	A	22	55
BRCA	TCGA-AN-A0FX	ZNF296	INS	Frame_Shift_Ins	19	45579448	-	C	2	45
BRCA	TCGA-AN-A0FX	NLRP4	SNP	Missense_Mutation	19	56370309	C	T	27	49
BRCA	TCGA-AN-A0FX	INSIG2	SNP	Missense_Mutation	2	118864325	G	A	37	100
BRCA	TCGA-AN-A0FX	ASXL2	SNP	Missense_Mutation	2	25967150	C	G	20	66
BRCA	TCGA-AN-A0FX	FAM82A1	SNP	Missense_Mutation	2	38178420	A	G	12	55
BRCA	TCGA-AN-A0FX	VPS16	SNP	Missense_Mutation	20	2843348	C	A	32	75
BRCA	TCGA-AN-A0FX	PCNT	SNP	Missense_Mutation	21	47810717	G	C	33	39
BRCA	TCGA-AN-A0FX	LIF	SNP	Missense_Mutation	22	30639798	C	T	19	66
BRCA	TCGA-AN-A0FX	TTC38	SNP	Missense_Mutation	22	46671227	G	T	45	95
BRCA	TCGA-AN-A0FX	RGAG1	SNP	Missense_Mutation	23	109694015	A	G	10	66
BRCA	TCGA-AN-A0FX	MTM1	SNP	Missense_Mutation	23	149814336	G	A	42	100
BRCA	TCGA-AN-A0FX	FAM47C	SNP	Silent	23	37026498	G	A	42	54
BRCA	TCGA-AN-A0FX	AKAP4	SNP	Missense_Mutation	23	49957911	C	A	32	72
BRCA	TCGA-AN-A0FX	NLGN4X	SNP	Missense_Mutation	23	5811009	G	A	37	91
BRCA	TCGA-AN-A0FX	GOLGB1	SNP	Missense_Mutation	3	121414165	C	A	22	49
BRCA	TCGA-AN-A0FX	SOX14	INS	Frame_Shift_Ins	3	137484002	-	G	23	59
BRCA	TCGA-AN-A0FX	COLQ	SNP	Missense_Mutation	3	15540055	T	C	51	47
BRCA	TCGA-AN-A0FX	AP2M1	DEL	Frame_Shift_Del	3	183896686	CCCGGCAGCAGGTGCGCAGC	-	26	97
BRCA	TCGA-AN-A0FX	TMEM207	SNP	Missense_Mutation	3	190158147	G	C	33	53
BRCA	TCGA-AN-A0FX	RARB	SNP	Silent	3	25470351	C	T	23	66
BRCA	TCGA-AN-A0FX	ZNF167	SNP	Missense_Mutation	3	44612620	G	A	36	55
BRCA	TCGA-AN-A0FX	ITPR1	DEL	Frame_Shift_Del	3	4824339	GT	-	36	66
BRCA	TCGA-AN-A0FX	PCDH10	SNP	Silent	4	134071574	G	A	46	61
BRCA	TCGA-AN-A0FX	C4orf52	INS	Frame_Shift_Ins	4	25915872	-	G	31	56
BRCA	TCGA-AN-A0FX	ZNF141	SNP	Missense_Mutation	4	366959	C	G	25	79
BRCA	TCGA-AN-A0FX	CWH43	SNP	Missense_Mutation	4	49040079	C	G	28	76
BRCA	TCGA-AN-A0FX	RPS17P2	SNP	Missense_Mutation	5	116052129	G	T	42	68
BRCA	TCGA-AN-A0FX	CDC25C	SNP	Silent	5	137621470	G	A	34	52
BRCA	TCGA-AN-A0FX	PSD2	SNP	Missense_Mutation	5	139201528	G	A	39	83
BRCA	TCGA-AN-A0FX	PCDHA9	SNP	Missense_Mutation	5	140230065	C	T	19	82
BRCA	TCGA-AN-A0FX	C5orf51	DEL	In_Frame_Del	5	41904499	ACGAGTGGA	-	10	51
BRCA	TCGA-AN-A0FX	KIAA0947	DEL	Frame_Shift_Del	5	5461231	AAAAAGAAGA	-	9	50
BRCA	TCGA-AN-A0FX	KIAA0947	DEL	Frame_Shift_Del	5	5461242	AC	-	14	50
BRCA	TCGA-AN-A0FX	ENSG00000227087	SNP	Silent	5	79627524	C	T	19	48
BRCA	TCGA-AN-A0FX	SEMA5A	SNP	Missense_Mutation	5	9224930	T	G	63	85
BRCA	TCGA-AN-A0FX	ASCC3	SNP	Silent	6	101086576	C	T	23	46
BRCA	TCGA-AN-A0FX	TAAR5	SNP	Missense_Mutation	6	132910165	T	G	62	78
BRCA	TCGA-AN-A0FX	ARID1B	DEL	Frame_Shift_Del	6	157099194	CA	-	25	56
BRCA	TCGA-AN-A0FX	TMEM151B	SNP	Missense_Mutation	6	44274744	A	G	10	45
BRCA	TCGA-AN-A0FX	FAM135A	SNP	Nonsense_Mutation	6	71243517	C	T	17	100
BRCA	TCGA-AN-A0FX	FLNC	DEL	Frame_Shift_Del	7	128491563	A	-	10	93
BRCA	TCGA-AN-A0FX	KIAA1549	SNP	Missense_Mutation	7	138604164	G	C	46	76
BRCA	TCGA-AN-A0FX	AGK	SNP	Missense_Mutation	7	141311049	G	A	48	56
BRCA	TCGA-AN-A0FX	TRBC1	SNP	Missense_Mutation	7	142379031	C	T	26	69
BRCA	TCGA-AN-A0FX	GIMAP7	SNP	Missense_Mutation	7	150217085	C	A	30	56
BRCA	TCGA-AN-A0FX	ESYT2	SNP	Silent	7	158529792	T	G	62	50
BRCA	TCGA-AN-A0FX	GPNMB	SNP	Missense_Mutation	7	23300153	C	T	22	78
BRCA	TCGA-AN-A0FX	NFE2L3	SNP	Missense_Mutation	7	26224471	G	A	45	72
BRCA	TCGA-AN-A0FX	NPC1L1	SNP	Silent	7	44578657	G	A	34	73
BRCA	TCGA-AN-A0FX	KRIT1	SNP	Missense_Mutation	7	91844024	T	A	49	76
BRCA	TCGA-AN-A0FX	TFPI2	SNP	Missense_Mutation	7	93516633	A	C	7	83
BRCA	TCGA-AN-A0FX	MBLAC1	INS	Frame_Shift_Ins	7	99725323	-	G	59	84
BRCA	TCGA-AN-A0FX	XPO7	SNP	Missense_Mutation	8	21862535	G	A	37	93
BRCA	TCGA-AN-A0FX	CSPP1	SNP	Silent	8	67986496	T	C	49	55
BRCA	TCGA-AN-A0FX	RPL7	SNP	Missense_Mutation	8	74205837	A	C	14	37
BRCA	TCGA-AN-A0FX	SMC2	SNP	Silent	9	106880574	A	G	3	57
BRCA	TCGA-AN-A0FX	ACTL7B	INS	Frame_Shift_Ins	9	111617204	-	C	42	57
BRCA	TCGA-AN-A0FX	STOM	SNP	Missense_Mutation	9	124103484	C	G	26	52
BRCA	TCGA-AN-A0FX	OR1J2	SNP	Missense_Mutation	9	125273997	G	T	36	52
BRCA	TCGA-AN-A0FX	CACNA1B	SNP	Silent	9	140943756	G	A	40	36
BRCA	TCGA-AN-A0FX	CNTLN	SNP	Missense_Mutation	9	17236550	G	C	45	75
BRCA	TCGA-AN-A0FY	CR1	SNP	Missense_Mutation	1	207726127	T	G	59	49
BRCA	TCGA-AN-A0FY	TEKT2	SNP	Splice_site	1	36553575	G	A	41	57
BRCA	TCGA-AN-A0FY	TTC22	SNP	Missense_Mutation	1	55253434	G	A	40	75
BRCA	TCGA-AN-A0FY	PER3	DEL	Frame_Shift_Del	1	7863784	CATTCTCC	-	17	78
BRCA	TCGA-AN-A0FY	ZNF33A	SNP	Missense_Mutation	10	38343498	T	C	62	57
BRCA	TCGA-AN-A0FY	KAT6B	SNP	Silent	10	76781040	A	G	3	54
BRCA	TCGA-AN-A0FY	NFRKB	SNP	Missense_Mutation	11	129754709	G	A	40	63
BRCA	TCGA-AN-A0FY	CNGA4	SNP	Missense_Mutation	11	6261469	C	T	23	75
BRCA	TCGA-AN-A0FY	NOS1	SNP	Missense_Mutation	12	117723955	C	T	23	99
BRCA	TCGA-AN-A0FY	PCED1B	SNP	Missense_Mutation	12	47630075	C	T	19	23
BRCA	TCGA-AN-A0FY	SUOX	DEL	In_Frame_Del	12	56397811	TCT	-	50	90
BRCA	TCGA-AN-A0FY	GPR162	SNP	Missense_Mutation	12	6933549	G	A	38	96
BRCA	TCGA-AN-A0FY	C1QTNF9B	SNP	Missense_Mutation	13	24465804	G	A	40	71
BRCA	TCGA-AN-A0FY	RB1	SNP	Nonsense_Mutation	13	48955538	C	T	19	54
BRCA	TCGA-AN-A0FY	GPC6	SNP	Missense_Mutation	13	94482640	G	A	33	100
BRCA	TCGA-AN-A0FY	NID2	SNP	Missense_Mutation	14	52493997	G	A	39	60
BRCA	TCGA-AN-A0FY	MYO9A	SNP	Missense_Mutation	15	72170551	G	A	40	83
BRCA	TCGA-AN-A0FY	ENSG00000234719	SNP	Missense_Mutation	16	12021615	G	C	33	NaN
BRCA	TCGA-AN-A0FY	SH2B1	SNP	Missense_Mutation	16	28878058	A	G	7	54
BRCA	TCGA-AN-A0FY	KIAA0100	SNP	Missense_Mutation	17	26961724	G	C	39	72
BRCA	TCGA-AN-A0FY	TP53	SNP	Missense_Mutation	17	7578413	C	T	17	97
BRCA	TCGA-AN-A0FY	FAM59A	SNP	Missense_Mutation	18	29848211	C	T	29	97
BRCA	TCGA-AN-A0FY	IL28B	SNP	Missense_Mutation	19	39735525	C	T	27	11
BRCA	TCGA-AN-A0FY	LCT	SNP	Missense_Mutation	2	136567537	G	A	37	76
BRCA	TCGA-AN-A0FY	NBAS	SNP	Missense_Mutation	2	15374721	A	T	11	65
BRCA	TCGA-AN-A0FY	GAD1	SNP	Missense_Mutation	2	171685996	A	G	3	76
BRCA	TCGA-AN-A0FY	DTNB	SNP	Missense_Mutation	2	25611152	A	G	10	88
BRCA	TCGA-AN-A0FY	STRN	SNP	Silent	2	37085129	C	T	23	31
BRCA	TCGA-AN-A0FY	NRXN1	SNP	Missense_Mutation	2	50464028	C	T	28	100
BRCA	TCGA-AN-A0FY	CRNKL1	SNP	Missense_Mutation	20	20033036	A	C	1	53
BRCA	TCGA-AN-A0FY	CEP250	SNP	Missense_Mutation	20	34092646	G	A	39	51
BRCA	TCGA-AN-A0FY	SIGLEC1	SNP	Silent	20	3683872	G	A	34	51
BRCA	TCGA-AN-A0FY	PLCG1	SNP	Nonsense_Mutation	20	39802848	C	T	23	59
BRCA	TCGA-AN-A0FY	ARMCX5	SNP	Missense_Mutation	23	101858403	G	T	36	51
BRCA	TCGA-AN-A0FY	RBMXL3	SNP	Missense_Mutation	23	114426631	G	A	37	57
BRCA	TCGA-AN-A0FY	DMD	SNP	Missense_Mutation	23	31165506	C	A	24	56
BRCA	TCGA-AN-A0FY	HEPH	SNP	Missense_Mutation	23	65475997	C	G	30	51
BRCA	TCGA-AN-A0FY	GSK3B	SNP	Silent	3	119585461	T	G	55	73
BRCA	TCGA-AN-A0FY	ZNF501	SNP	Missense_Mutation	3	44776097	C	A	17	55
BRCA	TCGA-AN-A0FY	SFMBT1	SNP	Missense_Mutation	3	52977509	G	A	44	100
BRCA	TCGA-AN-A0FY	MUC7	SNP	Missense_Mutation	4	71346600	C	T	17	46
BRCA	TCGA-AN-A0FY	ADAMTS3	SNP	Silent	4	73149357	G	A	47	60
BRCA	TCGA-AN-A0FY	DNAH5	SNP	Silent	5	13923485	G	A	37	44
BRCA	TCGA-AN-A0FY	C5orf25	SNP	Missense_Mutation	5	175717341	C	T	31	53
BRCA	TCGA-AN-A0FY	COL9A1	SNP	Missense_Mutation	6	70942387	G	A	43	79
BRCA	TCGA-AN-A0FY	RREB1	SNP	Missense_Mutation	6	7211929	G	A	33	77
BRCA	TCGA-AN-A0FY	ASIC3	SNP	Missense_Mutation	7	150746364	G	A	39	47
BRCA	TCGA-AN-A0FY	ELMO1	SNP	Missense_Mutation	7	37253022	G	A	38	100
BRCA	TCGA-AN-A0FY	RSPH10B	DEL	In_Frame_Del	7	5966167	GAA	-	45	29
BRCA	TCGA-AN-A0FY	TATDN1	SNP	Missense_Mutation	8	125506171	G	A	48	95
BRCA	TCGA-AN-A0FY	OR13C8	SNP	Missense_Mutation	9	107331659	G	A	40	61
BRCA	TCGA-AN-A0FZ	PSMD4	SNP	Missense_Mutation	1	151239784	G	A	39	55
BRCA	TCGA-AN-A0FZ	HSPG2	SNP	Missense_Mutation	1	22174253	C	T	19	58
BRCA	TCGA-AN-A0FZ	PGM1	SNP	Missense_Mutation	1	64097433	G	A	40	100
BRCA	TCGA-AN-A0FZ	DMBT1	SNP	Missense_Mutation	10	124377690	G	T	43	46
BRCA	TCGA-AN-A0FZ	DOCK1	SNP	Silent	10	128908590	C	T	31	49
BRCA	TCGA-AN-A0FZ	SGPL1	SNP	Nonsense_Mutation	10	72604349	G	A	41	57
BRCA	TCGA-AN-A0FZ	OR5D18	SNP	Missense_Mutation	11	55587367	G	T	48	48
BRCA	TCGA-AN-A0FZ	FAT3	SNP	Missense_Mutation	11	92616055	G	A	42	100
BRCA	TCGA-AN-A0FZ	DNAH10	SNP	Missense_Mutation	12	124341720	G	A	40	100
BRCA	TCGA-AN-A0FZ	NELL2	SNP	Missense_Mutation	12	45105162	G	A	36	70
BRCA	TCGA-AN-A0FZ	OR6C6	SNP	Missense_Mutation	12	55688683	G	A	35	60
BRCA	TCGA-AN-A0FZ	OS9	SNP	Silent	12	58114298	C	T	32	56
BRCA	TCGA-AN-A0FZ	ATG2B	SNP	Missense_Mutation	14	96773188	C	T	31	98
BRCA	TCGA-AN-A0FZ	AP4E1	SNP	Missense_Mutation	15	51223146	C	T	20	72
BRCA	TCGA-AN-A0FZ	SLCO3A1	SNP	Missense_Mutation	15	92671615	C	T	26	46
BRCA	TCGA-AN-A0FZ	SEPHS2	SNP	Missense_Mutation	16	30455839	C	T	19	70
BRCA	TCGA-AN-A0FZ	GPR114	SNP	Missense_Mutation	16	57597859	T	A	55	71
BRCA	TCGA-AN-A0FZ	MYBBP1A	SNP	Missense_Mutation	17	4448343	A	G	6	86
BRCA	TCGA-AN-A0FZ	EVPL	SNP	Missense_Mutation	17	74004932	G	A	38	61
BRCA	TCGA-AN-A0FZ	EPS15L1	SNP	Silent	19	16514562	C	T	27	33
BRCA	TCGA-AN-A0FZ	COMP	SNP	Missense_Mutation	19	18898318	C	T	31	68
BRCA	TCGA-AN-A0FZ	ANKRD24	SNP	Silent	19	4212477	G	A	39	29
BRCA	TCGA-AN-A0FZ	MYBPC2	SNP	Missense_Mutation	19	50957393	C	A	18	67
BRCA	TCGA-AN-A0FZ	TRIB2	SNP	Silent	2	12880596	C	T	19	65
BRCA	TCGA-AN-A0FZ	TMC2	SNP	Missense_Mutation	20	2596835	A	G	2	89
BRCA	TCGA-AN-A0FZ	SLC32A1	SNP	Silent	20	37356319	G	A	47	55
BRCA	TCGA-AN-A0FZ	KRTAP19-6	SNP	Missense_Mutation	21	31914098	C	T	21	39
BRCA	TCGA-AN-A0FZ	DDX53	SNP	Missense_Mutation	23	23018195	G	T	36	66
BRCA	TCGA-AN-A0FZ	CFP	SNP	Missense_Mutation	23	47485822	C	T	27	68
BRCA	TCGA-AN-A0FZ	TFRC	SNP	Missense_Mutation	3	195787076	G	A	40	50
BRCA	TCGA-AN-A0FZ	N4BP2	SNP	Missense_Mutation	4	40104400	C	T	20	52
BRCA	TCGA-AN-A0FZ	GRSF1	SNP	Silent	4	71697363	C	A	29	43
BRCA	TCGA-AN-A0FZ	MGAT4B	SNP	Missense_Mutation	5	179225212	G	A	38	77
BRCA	TCGA-AN-A0FZ	ISL1	SNP	Missense_Mutation	5	50689391	T	C	54	93
BRCA	TCGA-AN-A0FZ	MAST4	SNP	Missense_Mutation	5	66438047	G	A	45	100
BRCA	TCGA-AN-A0FZ	VNN2	SNP	Missense_Mutation	6	133072390	A	T	3	81
BRCA	TCGA-AN-A0FZ	GRM1	SNP	Missense_Mutation	6	146480705	G	A	40	83
BRCA	TCGA-AN-A0FZ	OPRM1	SNP	Missense_Mutation	6	154412313	G	T	48	65
BRCA	TCGA-AN-A0FZ	CUL7	SNP	Missense_Mutation	6	43005481	C	T	23	67
BRCA	TCGA-AN-A0FZ	COG5	SNP	Missense_Mutation	7	106898812	T	C	50	86
BRCA	TCGA-AN-A0FZ	ENSG00000225705	SNP	Missense_Mutation	7	48887568	C	T	30	60
BRCA	TCGA-AN-A0FZ	ZNF680	SNP	Missense_Mutation	7	63982642	G	T	45	46
BRCA	TCGA-AN-A0FZ	LZTS1	SNP	Missense_Mutation	8	20112587	G	A	39	58
BRCA	TCGA-AN-A0FZ	ZNF658	SNP	Missense_Mutation	9	40773302	T	C	49	57
BRCA	TCGA-AN-A0FZ	PTPRD	SNP	Nonsense_Mutation	9	8504363	C	A	24	80
BRCA	TCGA-AN-A0G0	PGD	SNP	Missense_Mutation	1	10477067	T	G	56	63
BRCA	TCGA-AN-A0G0	TOR1AIP1	SNP	Missense_Mutation	1	179870511	G	T	45	48
BRCA	TCGA-AN-A0G0	NID1	SNP	Missense_Mutation	1	236205579	C	T	21	80
BRCA	TCGA-AN-A0G0	ABCA4	SNP	Missense_Mutation	1	94466444	T	A	51	93
BRCA	TCGA-AN-A0G0	MCAM	SNP	Silent	11	119181587	G	T	39	52
BRCA	TCGA-AN-A0G0	USP2	SNP	Missense_Mutation	11	119229504	G	A	40	72
BRCA	TCGA-AN-A0G0	DNHD1	SNP	Missense_Mutation	11	6579764	G	A	33	79
BRCA	TCGA-AN-A0G0	LOC100131539	SNP	Silent	11	71527792	T	C	55	26
BRCA	TCGA-AN-A0G0	ALG10B	SNP	Missense_Mutation	12	38714401	G	A	36	47
BRCA	TCGA-AN-A0G0	FGF23	SNP	Silent	12	4479739	G	T	38	55
BRCA	TCGA-AN-A0G0	ACVR1B	SNP	Splice_site	12	52379131	C	T	19	65
BRCA	TCGA-AN-A0G0	USP5	SNP	Missense_Mutation	12	6964674	G	A	39	66
BRCA	TCGA-AN-A0G0	PHLDA1	SNP	Missense_Mutation	12	76424820	G	T	33	67
BRCA	TCGA-AN-A0G0	C14orf37	SNP	Missense_Mutation	14	58598350	G	A	44	53
BRCA	TCGA-AN-A0G0	SNRPN	SNP	Nonsense_Mutation	15	25222051	G	T	47	75
BRCA	TCGA-AN-A0G0	TPSAB1	SNP	Silent	16	1292350	G	A	40	40
BRCA	TCGA-AN-A0G0	FAM157C	SNP	Missense_Mutation	16	90167886	G	C	37	34
BRCA	TCGA-AN-A0G0	TP53	SNP	Nonsense_Mutation	17	7574003	G	A	39	57
BRCA	TCGA-AN-A0G0	SUPT5H	SNP	Missense_Mutation	19	39955678	G	A	45	99
BRCA	TCGA-AN-A0G0	NTSR2	SNP	Missense_Mutation	2	11802135	C	T	19	48
BRCA	TCGA-AN-A0G0	GPR39	SNP	Silent	2	133175158	G	T	45	53
BRCA	TCGA-AN-A0G0	FAM59B	SNP	Missense_Mutation	2	26405961	G	A	40	96
BRCA	TCGA-AN-A0G0	AFF2	SNP	Missense_Mutation	23	148037946	C	G	22	79
BRCA	TCGA-AN-A0G0	USP9X	SNP	Missense_Mutation	23	41076559	C	G	29	95
BRCA	TCGA-AN-A0G0	TGFBR2	SNP	Nonsense_Mutation	3	30732950	G	A	43	88
BRCA	TCGA-AN-A0G0	CAMK2D	SNP	Missense_Mutation	4	114434519	A	G	12	91
BRCA	TCGA-AN-A0G0	LAMA2	SNP	Missense_Mutation	6	129785500	G	A	40	100
BRCA	TCGA-AN-A0G0	PHACTR1	SNP	Missense_Mutation	6	13287303	G	T	37	91
BRCA	TCGA-AN-A0G0	NUP153	SNP	Missense_Mutation	6	17629273	T	A	51	47
BRCA	TCGA-AN-A0G0	AARS2	SNP	Missense_Mutation	6	44278884	C	T	19	54
BRCA	TCGA-AN-A0G0	LOC100132858	SNP	Missense_Mutation	7	36290	C	G	31	34
BRCA	TCGA-AN-A0G0	AOAH	SNP	Silent	7	36698846	A	G	8	53
BRCA	TCGA-AN-A0G0	GRM3	SNP	Missense_Mutation	7	86415634	G	A	38	100
BRCA	TCGA-AN-A0G0	COL14A1	SNP	Silent	8	121222032	C	T	19	48
BRCA	TCGA-AN-A0G0	TMEM246	SNP	Missense_Mutation	9	104238341	C	T	27	61
BRCA	TCGA-AN-A0XL	HIST2H2BF	SNP	Missense_Mutation	1	149783828	C	A	24	44
BRCA	TCGA-AN-A0XL	CD1C	SNP	Missense_Mutation	1	158261934	G	A	42	49
BRCA	TCGA-AN-A0XL	GPATCH2	SNP	Silent	1	217688214	T	G	55	40
BRCA	TCGA-AN-A0XL	TARBP1	SNP	Missense_Mutation	1	234566040	G	T	48	53
BRCA	TCGA-AN-A0XL	RERE	SNP	Missense_Mutation	1	8421506	A	C	2	53
BRCA	TCGA-AN-A0XL	TCF7L2	SNP	Silent	10	114849224	T	C	55	59
BRCA	TCGA-AN-A0XL	MKI67	SNP	Missense_Mutation	10	129905447	C	A	27	42
BRCA	TCGA-AN-A0XL	BBOX1	SNP	Silent	11	27148982	G	A	43	33
BRCA	TCGA-AN-A0XL	ARHGEF17	SNP	Missense_Mutation	11	73076908	G	A	39	96
BRCA	TCGA-AN-A0XL	AKAP13	SNP	Missense_Mutation	15	86124520	C	T	30	48
BRCA	TCGA-AN-A0XL	ANPEP	INS	Frame_Shift_Ins	15	90347735	-	G	59	33
BRCA	TCGA-AN-A0XL	ENSG00000214627	SNP	Missense_Mutation	16	31987200	G	T	45	54
BRCA	TCGA-AN-A0XL	RNF157	SNP	Missense_Mutation	17	74154520	G	A	37	92
BRCA	TCGA-AN-A0XL	TRAPPC8	SNP	Nonsense_Mutation	18	29497565	C	A	29	99
BRCA	TCGA-AN-A0XL	CLEC17A	SNP	Missense_Mutation	19	14710534	G	A	47	60
BRCA	TCGA-AN-A0XL	COMP	SNP	Missense_Mutation	19	18895094	C	T	23	59
BRCA	TCGA-AN-A0XL	GABPA	SNP	Missense_Mutation	21	27141488	C	G	21	97
BRCA	TCGA-AN-A0XL	ENSG00000222037	SNP	Missense_Mutation	22	23055588	A	G	2	56
BRCA	TCGA-AN-A0XL	CSTF2	SNP	Missense_Mutation	23	100083082	C	T	19	53
BRCA	TCGA-AN-A0XL	CHM	SNP	Missense_Mutation	23	85282501	A	G	2	80
BRCA	TCGA-AN-A0XL	ATP2B2	SNP	Silent	3	10370621	C	T	19	48
BRCA	TCGA-AN-A0XL	DNAJB8	SNP	Silent	3	128181429	C	T	29	47
BRCA	TCGA-AN-A0XL	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AN-A0XL	CHL1	SNP	Nonsense_Mutation	3	436516	A	T	1	58
BRCA	TCGA-AN-A0XL	ADH1B	SNP	Silent	4	100232778	G	T	46	34
BRCA	TCGA-AN-A0XL	PCDHA6	SNP	Silent	5	140209782	C	T	31	38
BRCA	TCGA-AN-A0XL	ZNF292	DEL	Frame_Shift_Del	6	87966725	ATATGCTGCATTTAAAATGCAGC	-	4	44
BRCA	TCGA-AN-A0XL	INHBA	SNP	Nonsense_Mutation	7	41729515	C	T	30	100
BRCA	TCGA-AN-A0XL	CROT	SNP	Silent	7	87005203	G	A	33	66
BRCA	TCGA-AN-A0XL	MTERFD1	DEL	In_Frame_Del	8	97263275	AGG	-	3	84
BRCA	TCGA-AN-A0XL	DBH	SNP	Silent	9	136516770	C	T	23	40
BRCA	TCGA-AN-A0XL	IFNE	SNP	Nonsense_Mutation	9	21481249	G	A	39	52
BRCA	TCGA-AN-A0XL	UNC13B	SNP	Silent	9	35398604	G	A	39	42
BRCA	TCGA-AN-A0XN	PEX14	SNP	Silent	1	10678420	C	T	27	42
BRCA	TCGA-AN-A0XN	IVL	SNP	Silent	1	152883341	G	T	47	56
BRCA	TCGA-AN-A0XN	UBQLN4	SNP	Missense_Mutation	1	156021546	C	T	23	96
BRCA	TCGA-AN-A0XN	CD5L	SNP	Missense_Mutation	1	157804422	T	C	58	53
BRCA	TCGA-AN-A0XN	TMEM82	SNP	Missense_Mutation	1	16069647	G	C	36	71
BRCA	TCGA-AN-A0XN	ITLN1	SNP	Silent	1	160850397	A	G	4	57
BRCA	TCGA-AN-A0XN	FCRLB	SNP	Missense_Mutation	1	161697280	A	T	10	58
BRCA	TCGA-AN-A0XN	SPEN	SNP	Silent	1	16255132	G	C	39	33
BRCA	TCGA-AN-A0XN	ASTN1	SNP	Missense_Mutation	1	176857332	C	A	24	61
BRCA	TCGA-AN-A0XN	SMG7	SNP	Splice_site	1	183515472	G	A	35	81
BRCA	TCGA-AN-A0XN	KIAA0090	SNP	Silent	1	19545923	C	T	20	83
BRCA	TCGA-AN-A0XN	CHI3L1	SNP	Missense_Mutation	1	203154456	T	A	50	52
BRCA	TCGA-AN-A0XN	LIN9	DEL	Frame_Shift_Del	1	226421094	TTTTCAT	-	52	64
BRCA	TCGA-AN-A0XN	TTC13	SNP	Missense_Mutation	1	231052041	T	G	52	90
BRCA	TCGA-AN-A0XN	OR2M2	SNP	Missense_Mutation	1	248343859	A	G	10	58
BRCA	TCGA-AN-A0XN	ZMYM4	SNP	Missense_Mutation	1	35835672	C	G	20	69
BRCA	TCGA-AN-A0XN	MACF1	SNP	Missense_Mutation	1	39907664	G	A	46	77
BRCA	TCGA-AN-A0XN	CLDN19	SNP	Missense_Mutation	1	43200803	G	T	47	66
BRCA	TCGA-AN-A0XN	ERMAP	SNP	Missense_Mutation	1	43296678	G	A	48	49
BRCA	TCGA-AN-A0XN	NRD1	SNP	Missense_Mutation	1	52344078	C	G	24	68
BRCA	TCGA-AN-A0XN	TM2D1	SNP	Missense_Mutation	1	62165923	C	A	18	59
BRCA	TCGA-AN-A0XN	ABCC2	SNP	Missense_Mutation	10	101611335	T	C	61	66
BRCA	TCGA-AN-A0XN	ELOVL3	SNP	Missense_Mutation	10	103988973	C	G	29	47
BRCA	TCGA-AN-A0XN	COL17A1	SNP	Missense_Mutation	10	105798207	G	T	34	77
BRCA	TCGA-AN-A0XN	C10orf68	SNP	Nonsense_Mutation	10	32977992	G	T	33	58
BRCA	TCGA-AN-A0XN	ITGB1	SNP	Missense_Mutation	10	33199265	G	C	47	75
BRCA	TCGA-AN-A0XN	VSTM4	DEL	In_Frame_Del	10	50311826	GGTGAA	-	39	46
BRCA	TCGA-AN-A0XN	STOX1	SNP	Missense_Mutation	10	70645645	G	T	41	62
BRCA	TCGA-AN-A0XN	CDH23	SNP	Missense_Mutation	10	73572580	G	T	39	100
BRCA	TCGA-AN-A0XN	AGAP5	SNP	Missense_Mutation	10	75435825	G	T	44	61
BRCA	TCGA-AN-A0XN	KIAA0913	SNP	Missense_Mutation	10	75556956	G	C	47	68
BRCA	TCGA-AN-A0XN	STAMBPL1	SNP	Splice_Site	10	90672857	G	T	33	86
BRCA	TCGA-AN-A0XN	C10orf129	SNP	Missense_Mutation	10	96967145	G	T	43	69
BRCA	TCGA-AN-A0XN	CCDC73	SNP	Missense_Mutation	11	32635102	G	A	38	45
BRCA	TCGA-AN-A0XN	CSTF3	SNP	Missense_Mutation	11	33106715	G	A	45	81
BRCA	TCGA-AN-A0XN	ANO9	SNP	Splice_site	11	429571	T	A	55	85
BRCA	TCGA-AN-A0XN	OR4A5	SNP	Missense_Mutation	11	51412037	C	G	27	64
BRCA	TCGA-AN-A0XN	TMEM132C	SNP	Missense_Mutation	12	129154029	C	A	32	81
BRCA	TCGA-AN-A0XN	PIK3C2G	SNP	Silent	12	18435045	T	C	50	49
BRCA	TCGA-AN-A0XN	LIMA1	SNP	Silent	12	50571618	G	T	41	52
BRCA	TCGA-AN-A0XN	IL22	SNP	Missense_Mutation	12	68647221	G	T	42	57
BRCA	TCGA-AN-A0XN	C12orf50	SNP	Splice_Site	12	88380088	C	G	18	82
BRCA	TCGA-AN-A0XN	LATS2	DEL	In_Frame_Del	13	21562480	GCCGGGGCGGGGGCGGGGGCGGGG	-	34	59
BRCA	TCGA-AN-A0XN	USP12	SNP	Missense_Mutation	13	27645275	C	T	31	99
BRCA	TCGA-AN-A0XN	PTGDR	SNP	Missense_Mutation	14	52735064	T	G	55	74
BRCA	TCGA-AN-A0XN	FBXO34	SNP	Missense_Mutation	14	55819095	G	C	35	78
BRCA	TCGA-AN-A0XN	C14orf166B	SNP	Missense_Mutation	14	77319604	G	A	47	73
BRCA	TCGA-AN-A0XN	TMEM63C	SNP	Missense_Mutation	14	77723060	G	C	36	48
BRCA	TCGA-AN-A0XN	C14orf102	SNP	Nonsense_Mutation	14	90769385	C	A	30	100
BRCA	TCGA-AN-A0XN	C14orf102	SNP	Missense_Mutation	14	90769387	A	G	7	91
BRCA	TCGA-AN-A0XN	PGBD4	SNP	Missense_Mutation	15	34395268	C	A	17	51
BRCA	TCGA-AN-A0XN	ATP8B4	SNP	Missense_Mutation	15	50226338	A	T	16	47
BRCA	TCGA-AN-A0XN	LRRC49	SNP	Silent	15	71211475	T	C	61	51
BRCA	TCGA-AN-A0XN	GPRC5B	SNP	Missense_Mutation	16	19883490	G	C	45	71
BRCA	TCGA-AN-A0XN	ACSM2B	SNP	Nonsense_Mutation	16	20576155	G	A	38	45
BRCA	TCGA-AN-A0XN	PKD1	SNP	Missense_Mutation	16	2159963	G	C	38	35
BRCA	TCGA-AN-A0XN	RBBP6	SNP	Missense_Mutation	16	24580268	T	A	49	84
BRCA	TCGA-AN-A0XN	CLN3	SNP	Missense_Mutation	16	28493806	G	C	47	86
BRCA	TCGA-AN-A0XN	SLC38A7	SNP	Missense_Mutation	16	58709846	G	T	48	100
BRCA	TCGA-AN-A0XN	LRRC29	SNP	Missense_Mutation	16	67241593	A	C	10	69
BRCA	TCGA-AN-A0XN	NFATC3	SNP	Missense_Mutation	16	68156087	G	C	35	57
BRCA	TCGA-AN-A0XN	CDRT1	DEL	In_Frame_Del	17	15492463	AGCTGT	-	11	51
BRCA	TCGA-AN-A0XN	C17orf97	SNP	Missense_Mutation	17	262995	A	T	8	72
BRCA	TCGA-AN-A0XN	HELZ	SNP	Missense_Mutation	17	65103686	T	G	56	62
BRCA	TCGA-AN-A0XN	ITGB4	SNP	Missense_Mutation	17	73736514	C	A	26	54
BRCA	TCGA-AN-A0XN	TP53	SNP	Splice_Site	17	7578556	T	C	55	80
BRCA	TCGA-AN-A0XN	DNAH2	SNP	Missense_Mutation	17	7661953	G	A	40	71
BRCA	TCGA-AN-A0XN	DNAH2	SNP	Missense_Mutation	17	7662906	A	G	12	69
BRCA	TCGA-AN-A0XN	MYH10	SNP	Missense_Mutation	17	8396156	C	T	30	100
BRCA	TCGA-AN-A0XN	ASXL3	DEL	Frame_Shift_Del	18	31324924	AACACAG	-	1	47
BRCA	TCGA-AN-A0XN	MYL12B	SNP	Missense_Mutation	18	3277358	G	T	33	100
BRCA	TCGA-AN-A0XN	TXNL4A	DEL	In_Frame_Del	18	77733812	TTG	-	56	89
BRCA	TCGA-AN-A0XN	DAND5	SNP	Silent	19	13080546	T	C	55	47
BRCA	TCGA-AN-A0XN	NOTCH3	SNP	Silent	19	15285085	G	A	38	36
BRCA	TCGA-AN-A0XN	COMP	SNP	Missense_Mutation	19	18896603	C	G	32	64
BRCA	TCGA-AN-A0XN	COMP	SNP	Missense_Mutation	19	18896620	C	T	32	94
BRCA	TCGA-AN-A0XN	COMP	SNP	Missense_Mutation	19	18900027	C	T	22	93
BRCA	TCGA-AN-A0XN	ANKRD27	SNP	Silent	19	33090934	T	C	57	35
BRCA	TCGA-AN-A0XN	HAUS5	SNP	Missense_Mutation	19	36104782	G	C	33	57
BRCA	TCGA-AN-A0XN	ZFP82	SNP	Silent	19	36883688	A	G	4	50
BRCA	TCGA-AN-A0XN	PLEKHG2	SNP	Silent	19	39914124	A	T	7	29
BRCA	TCGA-AN-A0XN	ARHGAP35	SNP	Silent	19	47422145	C	T	18	78
BRCA	TCGA-AN-A0XN	LENG1	SNP	Missense_Mutation	19	54660546	C	T	27	41
BRCA	TCGA-AN-A0XN	USP29	SNP	Missense_Mutation	19	57642432	A	C	8	42
BRCA	TCGA-AN-A0XN	ZSCAN1	SNP	Missense_Mutation	19	58564986	T	C	54	49
BRCA	TCGA-AN-A0XN	OR7D4	SNP	Missense_Mutation	19	9324928	T	A	61	48
BRCA	TCGA-AN-A0XN	GCC2	SNP	Silent	2	109088320	A	G	3	57
BRCA	TCGA-AN-A0XN	GPR35	SNP	Silent	2	241569867	C	A	22	53
BRCA	TCGA-AN-A0XN	EFEMP1	DEL	Frame_Shift_Del	2	56144946	G	-	46	67
BRCA	TCGA-AN-A0XN	EFEMP1	SNP	Missense_Mutation	2	56144947	C	A	25	74
BRCA	TCGA-AN-A0XN	FAM161A	SNP	Missense_Mutation	2	62081050	C	T	30	56
BRCA	TCGA-AN-A0XN	TET3	SNP	Missense_Mutation	2	74329093	G	T	35	60
BRCA	TCGA-AN-A0XN	VWA3B	SNP	Missense_Mutation	2	98914472	C	G	26	78
BRCA	TCGA-AN-A0XN	SIRPD	SNP	Silent	20	1538282	G	T	43	58
BRCA	TCGA-AN-A0XN	PLCG1	SNP	Missense_Mutation	20	39798875	A	G	3	89
BRCA	TCGA-AN-A0XN	SEMG2	SNP	Missense_Mutation	20	43851144	T	C	62	50
BRCA	TCGA-AN-A0XN	MMP9	SNP	Silent	20	44639873	C	T	19	57
BRCA	TCGA-AN-A0XN	ZNF334	SNP	Missense_Mutation	20	45130495	C	A	21	63
BRCA	TCGA-AN-A0XN	EYA2	SNP	Missense_Mutation	20	45702872	G	A	40	60
BRCA	TCGA-AN-A0XN	CHGB	SNP	Missense_Mutation	20	5904477	T	C	56	57
BRCA	TCGA-AN-A0XN	KRTAP6-1	SNP	Missense_Mutation	21	31986039	C	A	30	61
BRCA	TCGA-AN-A0XN	URB1	SNP	Missense_Mutation	21	33750825	T	G	57	76
BRCA	TCGA-AN-A0XN	ADRBK2	SNP	Missense_Mutation	22	26100079	G	A	48	94
BRCA	TCGA-AN-A0XN	MYH9	SNP	Silent	22	36689868	G	A	48	56
BRCA	TCGA-AN-A0XN	RANGAP1	SNP	Missense_Mutation	22	41652046	G	A	42	62
BRCA	TCGA-AN-A0XN	TTLL1	SNP	Missense_Mutation	22	43465764	T	C	60	90
BRCA	TCGA-AN-A0XN	COL4A5	SNP	Missense_Mutation	23	107924995	C	T	30	90
BRCA	TCGA-AN-A0XN	USP9X	INS	Frame_Shift_Ins	23	41048632	-	A	61	90
BRCA	TCGA-AN-A0XN	FAM155B	SNP	Missense_Mutation	23	68725887	C	A	18	63
BRCA	TCGA-AN-A0XN	TAF1	SNP	Nonsense_Mutation	23	70607214	T	G	61	85
BRCA	TCGA-AN-A0XN	PLOD2	SNP	Nonsense_Mutation	3	145841966	G	A	37	76
BRCA	TCGA-AN-A0XN	IGSF10	SNP	Missense_Mutation	3	151154674	C	G	32	68
BRCA	TCGA-AN-A0XN	PAK2	SNP	Missense_Mutation	3	196509620	C	G	29	81
BRCA	TCGA-AN-A0XN	LRCH3	DEL	Frame_Shift_Del	3	197556459	ATATTTAA	-	8	88
BRCA	TCGA-AN-A0XN	NEK10	SNP	Missense_Mutation	3	27394317	T	G	56	55
BRCA	TCGA-AN-A0XN	SUSD5	SNP	Silent	3	33194513	C	A	17	48
BRCA	TCGA-AN-A0XN	TTC21A	SNP	Missense_Mutation	3	39162585	G	C	42	73
BRCA	TCGA-AN-A0XN	TMEM115	SNP	Silent	3	50396249	C	T	21	56
BRCA	TCGA-AN-A0XN	DOCK3	SNP	Silent	3	51378786	G	T	41	45
BRCA	TCGA-AN-A0XN	ARL8B	SNP	Missense_Mutation	3	5220352	T	G	50	91
BRCA	TCGA-AN-A0XN	FLNB	SNP	Silent	3	58124079	G	C	41	55
BRCA	TCGA-AN-A0XN	RXFP1	SNP	Missense_Mutation	4	159573147	C	G	29	64
BRCA	TCGA-AN-A0XN	IRF2	SNP	Missense_Mutation	4	185329410	G	C	33	81
BRCA	TCGA-AN-A0XN	KDR	SNP	Missense_Mutation	4	55979642	G	A	46	60
BRCA	TCGA-AN-A0XN	AFF1	SNP	Missense_Mutation	4	88029327	C	T	30	59
BRCA	TCGA-AN-A0XN	SLC6A19	SNP	Silent	5	1219062	C	T	21	66
BRCA	TCGA-AN-A0XN	DNAH5	SNP	Silent	5	13866371	G	A	34	52
BRCA	TCGA-AN-A0XN	C5orf65	SNP	Silent	5	138729040	C	G	30	51
BRCA	TCGA-AN-A0XN	DNAH5	SNP	Missense_Mutation	5	13902205	G	C	45	60
BRCA	TCGA-AN-A0XN	EGFLAM	SNP	Missense_Mutation	5	38431296	C	A	18	60
BRCA	TCGA-AN-A0XN	ZNF131	SNP	Missense_Mutation	5	43174618	C	A	18	97
BRCA	TCGA-AN-A0XN	ARHGEF28	SNP	Missense_Mutation	5	73153573	A	G	4	77
BRCA	TCGA-AN-A0XN	LAMA4	SNP	Missense_Mutation	6	112452195	C	T	19	47
BRCA	TCGA-AN-A0XN	AHI1	SNP	Missense_Mutation	6	135776985	T	C	61	90
BRCA	TCGA-AN-A0XN	PLEKHG1	SNP	Silent	6	151055039	G	A	39	44
BRCA	TCGA-AN-A0XN	SYNE1	SNP	Missense_Mutation	6	152737562	C	T	32	78
BRCA	TCGA-AN-A0XN	MLLT4	DEL	In_Frame_Del	6	168347423	AGAGTGAAGGCTTTG	-	3	92
BRCA	TCGA-AN-A0XN	ZSCAN23	SNP	Nonsense_Mutation	6	28403825	G	T	42	64
BRCA	TCGA-AN-A0XN	ARMC12	SNP	Silent	6	35704942	C	T	29	54
BRCA	TCGA-AN-A0XN	C6orf146	SNP	Missense_Mutation	6	4073690	C	T	18	64
BRCA	TCGA-AN-A0XN	SLC29A1	SNP	Missense_Mutation	6	44195040	A	G	2	42
BRCA	TCGA-AN-A0XN	EFHC1	SNP	Missense_Mutation	6	52303141	A	G	16	47
BRCA	TCGA-AN-A0XN	RELN	SNP	Splice_Site	7	103212629	A	C	14	87
BRCA	TCGA-AN-A0XN	NRF1	SNP	Missense_Mutation	7	129297253	C	T	26	77
BRCA	TCGA-AN-A0XN	PKD1L1	SNP	Silent	7	47897212	A	G	11	57
BRCA	TCGA-AN-A0XN	OR2AE1	SNP	Missense_Mutation	7	99474106	A	C	2	71
BRCA	TCGA-AN-A0XN	PKHD1L1	SNP	Missense_Mutation	8	110441588	T	C	52	61
BRCA	TCGA-AN-A0XN	NEFL	SNP	Nonsense_Mutation	8	24813917	G	T	45	93
BRCA	TCGA-AN-A0XN	TGS1	SNP	Missense_Mutation	8	56699101	A	T	5	57
BRCA	TCGA-AN-A0XN	RUNX1T1	SNP	Silent	8	92982889	G	A	38	49
BRCA	TCGA-AN-A0XN	CDH17	SNP	Silent	8	95189827	A	G	11	51
BRCA	TCGA-AN-A0XN	COL15A1	SNP	Missense_Mutation	9	101759318	G	C	41	72
BRCA	TCGA-AN-A0XN	OR13C4	SNP	Missense_Mutation	9	107289314	C	T	17	71
BRCA	TCGA-AN-A0XN	HSDL2	SNP	Missense_Mutation	9	115221807	C	T	25	64
BRCA	TCGA-AN-A0XN	ODF2	SNP	Missense_Mutation	9	131247725	C	A	24	73
BRCA	TCGA-AN-A0XN	CDC37L1	SNP	Missense_Mutation	9	4684908	A	G	5	62
BRCA	TCGA-AN-A0XN	TMEM2	SNP	Silent	9	74300299	T	A	49	61
BRCA	TCGA-AN-A0XO	VPS72	SNP	Missense_Mutation	1	151162528	C	T	32	81
BRCA	TCGA-AN-A0XO	PBXIP1	SNP	Missense_Mutation	1	154918213	T	A	50	65
BRCA	TCGA-AN-A0XO	HEATR8	SNP	Missense_Mutation	1	55118602	G	A	47	69
BRCA	TCGA-AN-A0XO	BAG3	SNP	Missense_Mutation	10	121429471	C	T	30	96
BRCA	TCGA-AN-A0XO	C10orf27	SNP	Missense_Mutation	10	72541754	C	T	27	28
BRCA	TCGA-AN-A0XO	HECTD2	SNP	Silent	10	93258862	A	G	8	53
BRCA	TCGA-AN-A0XO	TRIM77	SNP	Missense_Mutation	11	89447501	A	T	2	46
BRCA	TCGA-AN-A0XO	EP400NL	SNP	Silent	12	132589423	G	A	38	45
BRCA	TCGA-AN-A0XO	LRRK2	SNP	Missense_Mutation	12	40714892	T	C	50	90
BRCA	TCGA-AN-A0XO	GALNT6	SNP	Silent	12	51771043	G	A	41	62
BRCA	TCGA-AN-A0XO	KRT18	SNP	Silent	12	53344651	C	T	29	54
BRCA	TCGA-AN-A0XO	NAV3	SNP	Nonsense_Mutation	12	78444719	C	T	31	78
BRCA	TCGA-AN-A0XO	ZMYM2	SNP	Missense_Mutation	13	20641448	A	G	8	63
BRCA	TCGA-AN-A0XO	FAM124A	SNP	Silent	13	51855020	G	C	39	38
BRCA	TCGA-AN-A0XO	TBC1D4	SNP	Missense_Mutation	13	76055696	C	T	31	79
BRCA	TCGA-AN-A0XO	PACS2	SNP	Splice_site	14	105856299	C	G	22	93
BRCA	TCGA-AN-A0XO	SRRM2	DEL	In_Frame_Del	16	2817256	GCCAGC	-	34	78
BRCA	TCGA-AN-A0XO	ZG16	SNP	Missense_Mutation	16	29790955	T	C	57	76
BRCA	TCGA-AN-A0XO	WDR62	SNP	Missense_Mutation	19	36595494	T	C	50	49
BRCA	TCGA-AN-A0XO	IL1R2	DEL	Frame_Shift_Del	2	102625086	CAGC	-	29	63
BRCA	TCGA-AN-A0XO	IL1R2	SNP	Missense_Mutation	2	102625095	G	A	42	63
BRCA	TCGA-AN-A0XO	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	TCGA-AN-A0XO	ANKMY1	SNP	Missense_Mutation	2	241468736	G	A	45	56
BRCA	TCGA-AN-A0XO	NCOA1	SNP	Missense_Mutation	2	24905948	C	A	19	48
BRCA	TCGA-AN-A0XO	TTC27	SNP	Missense_Mutation	2	32889484	A	G	12	78
BRCA	TCGA-AN-A0XO	SNRNP200	SNP	Silent	2	96964156	A	G	1	68
BRCA	TCGA-AN-A0XO	ADAMTS5	SNP	Missense_Mutation	21	28307044	C	T	31	74
BRCA	TCGA-AN-A0XO	GRIPAP1	SNP	Missense_Mutation	23	48837669	C	T	30	93
BRCA	TCGA-AN-A0XO	KIAA2018	SNP	Missense_Mutation	3	113379390	C	G	22	51
BRCA	TCGA-AN-A0XO	HGD	SNP	Silent	3	120369683	G	A	48	57
BRCA	TCGA-AN-A0XO	PIK3CA	SNP	Missense_Mutation	3	178928079	G	A	33	98
BRCA	TCGA-AN-A0XO	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-AN-A0XO	PCDH10	SNP	Silent	4	134071406	C	T	31	71
BRCA	TCGA-AN-A0XO	KIAA1211	SNP	Missense_Mutation	4	57189551	A	G	12	51
BRCA	TCGA-AN-A0XO	HSD17B13	INS	Splice_Site	4	88231392	-	A	61	76
BRCA	TCGA-AN-A0XO	TAAR2	SNP	Silent	6	132938832	A	G	7	45
BRCA	TCGA-AN-A0XO	TAP1	DEL	Splice_Site	6	32818088	GGTGCTCACACTAGT	-	35	58
BRCA	TCGA-AN-A0XO	COL12A1	SNP	Missense_Mutation	6	75823017	G	A	40	73
BRCA	TCGA-AN-A0XO	CDCA2	SNP	Missense_Mutation	8	25325771	T	C	60	52
BRCA	TCGA-AN-A0XO	PREX2	SNP	Missense_Mutation	8	68939478	C	T	19	56
BRCA	TCGA-AN-A0XO	PHF19	SNP	Missense_Mutation	9	123629214	C	G	23	96
BRCA	TCGA-AN-A0XO	GSN	SNP	Silent	9	124079465	C	T	19	47
BRCA	TCGA-AN-A0XO	OR1Q1	SNP	Missense_Mutation	9	125377610	G	A	45	58
BRCA	TCGA-AN-A0XP	CD2	SNP	Nonsense_Mutation	1	117311091	G	T	41	54
BRCA	TCGA-AN-A0XP	CHD1L	SNP	Missense_Mutation	1	146724328	C	T	27	46
BRCA	TCGA-AN-A0XP	HIST2H2AC	SNP	Silent	1	149858866	C	G	23	49
BRCA	TCGA-AN-A0XP	LBR	SNP	Missense_Mutation	1	225592382	C	T	25	69
BRCA	TCGA-AN-A0XP	CAPN1	SNP	Missense_Mutation	11	64953422	T	C	59	86
BRCA	TCGA-AN-A0XP	APPL2	SNP	Missense_Mutation	12	105570747	C	G	32	66
BRCA	TCGA-AN-A0XP	SCN8A	SNP	Missense_Mutation	12	52115519	G	A	37	63
BRCA	TCGA-AN-A0XP	USP15	SNP	Splice_Site	12	62784642	A	C	3	87
BRCA	TCGA-AN-A0XP	CSNK1A1L	SNP	Missense_Mutation	13	37678520	A	G	16	74
BRCA	TCGA-AN-A0XP	ENSG00000136149	SNP	Missense_Mutation	13	55015392	G	A	38	62
BRCA	TCGA-AN-A0XP	OR4K14	SNP	Missense_Mutation	14	20482985	C	G	32	89
BRCA	TCGA-AN-A0XP	RTN4RL1	SNP	Silent	17	1839853	C	T	23	50
BRCA	TCGA-AN-A0XP	SLC1A4	SNP	Splice_Site	2	65243809	T	C	59	94
BRCA	TCGA-AN-A0XP	SNRNP200	SNP	Missense_Mutation	2	96956114	G	A	41	85
BRCA	TCGA-AN-A0XP	CYP24A1	SNP	Splice_Site	20	52789446	A	T	6	86
BRCA	TCGA-AN-A0XP	KRTAP13-4	SNP	Missense_Mutation	21	31802736	A	G	14	52
BRCA	TCGA-AN-A0XP	SH3BP1	SNP	Missense_Mutation	22	38037425	C	G	30	51
BRCA	TCGA-AN-A0XP	TMEM47	SNP	Silent	23	34674970	C	G	30	67
BRCA	TCGA-AN-A0XP	CCDC120	SNP	Missense_Mutation	23	48924824	C	T	23	64
BRCA	TCGA-AN-A0XP	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-AN-A0XP	FAT1	SNP	Nonsense_Mutation	4	187524066	G	A	45	58
BRCA	TCGA-AN-A0XP	HSD17B4	DEL	Splice_site	5	118860980	G	-	35	87
BRCA	TCGA-AN-A0XP	KIAA0947	SNP	Missense_Mutation	5	5457514	G	A	42	54
BRCA	TCGA-AN-A0XP	ELL2	DEL	Frame_Shift_Del	5	95234058	CCTTATG	-	30	96
BRCA	TCGA-AN-A0XP	NCR2	SNP	Silent	6	41304105	C	A	32	52
BRCA	TCGA-AN-A0XP	MLL3	DEL	Frame_Shift_Del	7	151845282	GG	-	35	96
BRCA	TCGA-AN-A0XP	WIPF3	SNP	Silent	7	29923974	G	A	34	42
BRCA	TCGA-AN-A0XP	GTF2IRD2	SNP	Missense_Mutation	7	74234113	T	C	52	41
BRCA	TCGA-AN-A0XP	SHARPIN	SNP	Silent	8	145154196	A	C	11	52
BRCA	TCGA-AN-A0XP	TACC1	SNP	Missense_Mutation	8	38684873	C	T	27	56
BRCA	TCGA-AN-A0XP	CAMSAP1	SNP	Silent	9	138714311	A	T	11	23
BRCA	TCGA-AN-A0XR	GNAT2	SNP	Missense_Mutation	1	110151266	C	T	29	97
BRCA	TCGA-AN-A0XR	KIF17	SNP	Missense_Mutation	1	21014005	G	A	43	56
BRCA	TCGA-AN-A0XR	PLD5	SNP	Missense_Mutation	1	242253346	G	T	46	62
BRCA	TCGA-AN-A0XR	CHD5	SNP	Silent	1	6206325	G	A	44	58
BRCA	TCGA-AN-A0XR	ASB17	SNP	Missense_Mutation	1	76397891	C	T	32	68
BRCA	TCGA-AN-A0XR	GATA3	INS	Frame_Shift_Ins	10	8115874	-	G	31	85
BRCA	TCGA-AN-A0XR	C11orf63	SNP	Missense_Mutation	11	122805197	G	A	45	59
BRCA	TCGA-AN-A0XR	TBX3	INS	Frame_Shift_Ins	12	115118687	-	C	50	64
BRCA	TCGA-AN-A0XR	IQSEC3	SNP	Missense_Mutation	12	247616	A	T	11	54
BRCA	TCGA-AN-A0XR	SLC6A13	SNP	Missense_Mutation	12	346454	C	T	23	100
BRCA	TCGA-AN-A0XR	FAM186A	SNP	Missense_Mutation	12	50757068	G	T	41	42
BRCA	TCGA-AN-A0XR	EEA1	SNP	Silent	12	93192857	A	T	11	62
BRCA	TCGA-AN-A0XR	AKT1	SNP	Missense_Mutation	14	105246445	A	C	11	87
BRCA	TCGA-AN-A0XR	SLC51B	SNP	Missense_Mutation	15	65345362	G	A	42	50
BRCA	TCGA-AN-A0XR	SRCAP	SNP	Missense_Mutation	16	30718965	G	A	42	68
BRCA	TCGA-AN-A0XR	CMTM2	SNP	Silent	16	66613573	G	A	43	47
BRCA	TCGA-AN-A0XR	PRMT7	SNP	Missense_Mutation	16	68389705	C	G	22	81
BRCA	TCGA-AN-A0XR	MAP2K4	INS	Frame_Shift_Ins	17	11998971	-	C	46	86
BRCA	TCGA-AN-A0XR	NWD1	SNP	Silent	19	16860188	G	A	40	38
BRCA	TCGA-AN-A0XR	STXBP2	SNP	Missense_Mutation	19	7712301	C	T	28	66
BRCA	TCGA-AN-A0XR	PTBP1	SNP	Missense_Mutation	19	808664	C	G	20	66
BRCA	TCGA-AN-A0XR	OR2Z1	SNP	Missense_Mutation	19	8841539	G	A	40	43
BRCA	TCGA-AN-A0XR	FAM65C	SNP	Silent	20	49236588	C	T	23	38
BRCA	TCGA-AN-A0XR	BRWD1	SNP	Missense_Mutation	21	40587280	G	C	33	98
BRCA	TCGA-AN-A0XR	GNL3L	SNP	Missense_Mutation	23	54574726	G	T	41	88
BRCA	TCGA-AN-A0XR	KIAA2018	SNP	Missense_Mutation	3	113374374	G	A	45	82
BRCA	TCGA-AN-A0XR	COL6A5	SNP	Missense_Mutation	3	130134498	G	A	43	71
BRCA	TCGA-AN-A0XR	APC	SNP	Silent	5	112179286	C	G	21	56
BRCA	TCGA-AN-A0XR	PCDHAC1	SNP	Missense_Mutation	5	140307132	G	C	36	68
BRCA	TCGA-AN-A0XR	MAT2B	SNP	Missense_Mutation	5	162943532	G	T	48	76
BRCA	TCGA-AN-A0XR	CDH9	SNP	Missense_Mutation	5	26881437	G	T	44	58
BRCA	TCGA-AN-A0XR	HDDC2	SNP	Missense_Mutation	6	125614019	C	T	30	69
BRCA	TCGA-AN-A0XR	GPLD1	SNP	Missense_Mutation	6	24456781	C	T	19	48
BRCA	TCGA-AN-A0XR	INTS8	SNP	Silent	8	95892348	C	G	29	47
BRCA	TCGA-AN-A0XS	TNFRSF8	SNP	Missense_Mutation	1	12157238	G	T	42	48
BRCA	TCGA-AN-A0XS	RCSD1	SNP	Missense_Mutation	1	167667018	G	T	42	43
BRCA	TCGA-AN-A0XS	ROR1	SNP	Missense_Mutation	1	64643303	A	C	4	59
BRCA	TCGA-AN-A0XS	TAF3	DEL	Frame_Shift_Del	10	8006100	ATTG	-	16	50
BRCA	TCGA-AN-A0XS	PHLDB1	SNP	Missense_Mutation	11	118486807	G	A	42	96
BRCA	TCGA-AN-A0XS	NT5DC3	SNP	Missense_Mutation	12	104208866	T	A	52	91
BRCA	TCGA-AN-A0XS	XRCC6BP1	DEL	Frame_Shift_Del	12	58339430	G	-	46	15
BRCA	TCGA-AN-A0XS	XRCC6BP1	DEL	Frame_Shift_Del	12	58339432	T	-	56	82
BRCA	TCGA-AN-A0XS	MKRN3	SNP	Silent	15	23811331	G	A	38	49
BRCA	TCGA-AN-A0XS	INO80	SNP	Missense_Mutation	15	41275191	G	A	42	74
BRCA	TCGA-AN-A0XS	C18orf54	SNP	Missense_Mutation	18	51889197	G	A	45	62
BRCA	TCGA-AN-A0XS	PTPRM	SNP	Silent	18	8088802	C	T	23	28
BRCA	TCGA-AN-A0XS	SLC44A2	SNP	Missense_Mutation	19	10742416	A	G	11	85
BRCA	TCGA-AN-A0XS	ACVR2A	SNP	Missense_Mutation	2	148680662	C	T	31	100
BRCA	TCGA-AN-A0XS	AOX1	SNP	Missense_Mutation	2	201523988	T	A	59	55
BRCA	TCGA-AN-A0XS	ATIC	SNP	Missense_Mutation	2	216177253	G	A	48	60
BRCA	TCGA-AN-A0XS	THNSL2	DEL	Frame_Shift_Del	2	88482500	C	-	28	62
BRCA	TCGA-AN-A0XS	THNSL2	DEL	Frame_Shift_Del	2	88482502	CTCTGGCTCTGACAGC	-	32	47
BRCA	TCGA-AN-A0XS	SLC4A11	SNP	Silent	20	3214874	G	A	40	44
BRCA	TCGA-AN-A0XS	ATP9A	SNP	Nonsense_Mutation	20	50287755	C	T	21	96
BRCA	TCGA-AN-A0XS	SMC1B	SNP	Missense_Mutation	22	45789669	C	T	29	56
BRCA	TCGA-AN-A0XS	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-AN-A0XS	PDZRN3	SNP	Missense_Mutation	3	73433946	C	T	31	97
BRCA	TCGA-AN-A0XS	WDFY3	SNP	Missense_Mutation	4	85600076	T	A	60	55
BRCA	TCGA-AN-A0XS	SLC25A2	SNP	Missense_Mutation	5	140682837	G	A	38	75
BRCA	TCGA-AN-A0XS	SH3PXD2B	SNP	Missense_Mutation	5	171766645	C	A	30	78
BRCA	TCGA-AN-A0XS	MAP3K1	DEL	Splice_site	5	56177098	AGGTAATTTTTCTTCTGAAA	-	7	81
BRCA	TCGA-AN-A0XS	HGC6.3	SNP	Silent	6	168377051	G	T	43	27
BRCA	TCGA-AN-A0XS	ABT1	SNP	Missense_Mutation	6	26598210	G	T	41	74
BRCA	TCGA-AN-A0XS	FKSG83	SNP	Missense_Mutation	6	27293456	C	T	29	60
BRCA	TCGA-AN-A0XS	CRHR2	SNP	Silent	7	30704716	G	A	37	55
BRCA	TCGA-AN-A0XT	EIF2C3	SNP	Silent	1	36509128	C	T	32	85
BRCA	TCGA-AN-A0XT	TULP3	SNP	Missense_Mutation	12	3040249	A	G	2	47
BRCA	TCGA-AN-A0XT	LPAR6	SNP	Missense_Mutation	13	48986180	A	G	15	94
BRCA	TCGA-AN-A0XT	ADAMTS17	SNP	Missense_Mutation	15	100649205	C	T	23	86
BRCA	TCGA-AN-A0XT	RPL4	SNP	Silent	15	66795050	G	A	35	48
BRCA	TCGA-AN-A0XT	TP53	SNP	Splice_Site	17	7578555	C	T	20	82
BRCA	TCGA-AN-A0XT	DHDH	SNP	Silent	19	49438313	C	T	19	51
BRCA	TCGA-AN-A0XT	DNMT3A	SNP	Missense_Mutation	2	25457242	C	T	27	99
BRCA	TCGA-AN-A0XT	FAM179A	SNP	Missense_Mutation	2	29259479	G	A	38	57
BRCA	TCGA-AN-A0XT	APLF	SNP	Missense_Mutation	2	68794511	C	T	19	50
BRCA	TCGA-AN-A0XT	COL6A2	SNP	Missense_Mutation	21	47549113	C	T	25	52
BRCA	TCGA-AN-A0XT	POLR2F	SNP	Missense_Mutation	22	38349806	C	A	19	66
BRCA	TCGA-AN-A0XT	SEC22A	SNP	Missense_Mutation	3	122990400	G	A	39	99
BRCA	TCGA-AN-A0XT	TREM1	SNP	Splice_site	6	41243863	C	T	24	57
BRCA	TCGA-AN-A0XT	HTR5A	SNP	Missense_Mutation	7	154862859	G	A	40	53
BRCA	TCGA-AN-A0XT	LMBR1	SNP	Silent	7	156619309	G	A	43	54
BRCA	TCGA-AN-A0XT	TMED4	SNP	Silent	7	44621754	G	A	34	55
BRCA	TCGA-AN-A0XU	SDF4	DEL	In_Frame_Del	1	1153907	GTCTTTCACCCAGTTGTC	-	48	53
BRCA	TCGA-AN-A0XU	HSD3B2	SNP	Missense_Mutation	1	119964794	T	C	53	82
BRCA	TCGA-AN-A0XU	ITGA10	SNP	Missense_Mutation	1	145527965	G	T	37	61
BRCA	TCGA-AN-A0XU	RAB13	SNP	Silent	1	153955065	C	T	28	51
BRCA	TCGA-AN-A0XU	ITLN2	SNP	Splice_site	1	160924178	T	G	55	45
BRCA	TCGA-AN-A0XU	SPEN	DEL	Frame_Shift_Del	1	16199441	AG	-	7	77
BRCA	TCGA-AN-A0XU	NUF2	SNP	Missense_Mutation	1	163318796	C	G	29	60
BRCA	TCGA-AN-A0XU	C1orf220	SNP	Missense_Mutation	1	178514978	C	G	24	49
BRCA	TCGA-AN-A0XU	OR2T12	SNP	Missense_Mutation	1	248458366	A	T	12	63
BRCA	TCGA-AN-A0XU	NASP	SNP	Splice_Site	1	46072992	G	C	33	99
BRCA	TCGA-AN-A0XU	GBP7	SNP	Missense_Mutation	1	89613451	C	A	32	51
BRCA	TCGA-AN-A0XU	KAZALD1	SNP	Silent	10	102824287	G	T	45	62
BRCA	TCGA-AN-A0XU	PPP2R2D	SNP	Missense_Mutation	10	133748053	A	T	2	54
BRCA	TCGA-AN-A0XU	MYO3A	SNP	Silent	10	26436364	C	T	32	49
BRCA	TCGA-AN-A0XU	DNAJC9	SNP	Missense_Mutation	10	75005836	G	C	48	54
BRCA	TCGA-AN-A0XU	ZMIZ1	SNP	Missense_Mutation	10	81058277	G	A	40	99
BRCA	TCGA-AN-A0XU	TRPC6	DEL	Frame_Shift_Del	11	101375047	TGGGAGAACCGTGTCCCAT	-	51	64
BRCA	TCGA-AN-A0XU	DIXDC1	SNP	Missense_Mutation	11	111857608	G	T	36	92
BRCA	TCGA-AN-A0XU	LGR4	SNP	Missense_Mutation	11	27406951	G	A	40	78
BRCA	TCGA-AN-A0XU	OSBPL5	SNP	Silent	11	3141816	G	A	38	50
BRCA	TCGA-AN-A0XU	ANO9	DEL	Frame_Shift_Del	11	428132	GAAGA	-	45	52
BRCA	TCGA-AN-A0XU	F2	SNP	Silent	11	46750993	A	T	7	13
BRCA	TCGA-AN-A0XU	OR9G4	SNP	Silent	11	56510658	G	A	40	45
BRCA	TCGA-AN-A0XU	FAM111B	SNP	Silent	11	58893517	C	G	24	43
BRCA	TCGA-AN-A0XU	CREBZF	DEL	Frame_Shift_Del	11	85375730	CCAACTCTCCTTCGTCG	-	30	70
BRCA	TCGA-AN-A0XU	TYR	SNP	Missense_Mutation	11	88911483	G	T	33	68
BRCA	TCGA-AN-A0XU	MAML2	SNP	Missense_Mutation	11	95825480	G	A	35	77
BRCA	TCGA-AN-A0XU	SETD1B	DEL	Frame_Shift_Del	12	122255181	TG	-	55	44
BRCA	TCGA-AN-A0XU	VWF	SNP	Missense_Mutation	12	6078528	G	T	44	58
BRCA	TCGA-AN-A0XU	KATNAL1	SNP	Missense_Mutation	13	30854326	A	T	2	88
BRCA	TCGA-AN-A0XU	KL	SNP	Missense_Mutation	13	33635059	A	G	8	51
BRCA	TCGA-AN-A0XU	TSC22D1	SNP	Missense_Mutation	13	45148403	G	A	43	61
BRCA	TCGA-AN-A0XU	OR4K15	SNP	Missense_Mutation	14	20444111	A	T	10	83
BRCA	TCGA-AN-A0XU	TEP1	SNP	Missense_Mutation	14	20873681	C	T	29	51
BRCA	TCGA-AN-A0XU	SPTB	SNP	Missense_Mutation	14	65271779	A	T	3	88
BRCA	TCGA-AN-A0XU	RASGRF1	SNP	Missense_Mutation	15	79291119	C	A	32	93
BRCA	TCGA-AN-A0XU	DNAH3	SNP	Splice_site	16	20944829	C	A	18	100
BRCA	TCGA-AN-A0XU	ITGAL	SNP	Missense_Mutation	16	30528336	C	A	24	62
BRCA	TCGA-AN-A0XU	TEPP	SNP	Splice_site	16	58021301	C	T	31	73
BRCA	TCGA-AN-A0XU	PKD1L2	SNP	Missense_Mutation	16	81232651	C	G	17	54
BRCA	TCGA-AN-A0XU	ATP2C2	SNP	Missense_Mutation	16	84449123	C	G	31	58
BRCA	TCGA-AN-A0XU	OR1D5	SNP	Missense_Mutation	17	2966511	G	A	47	62
BRCA	TCGA-AN-A0XU	OR1A1	SNP	Missense_Mutation	17	3119462	C	T	22	82
BRCA	TCGA-AN-A0XU	BRCA1	SNP	Missense_Mutation	17	41201181	C	A	18	76
BRCA	TCGA-AN-A0XU	HOXB2	SNP	Missense_Mutation	17	46622059	G	A	42	70
BRCA	TCGA-AN-A0XU	HOXB3	SNP	Missense_Mutation	17	46629421	G	A	40	61
BRCA	TCGA-AN-A0XU	SMG8	SNP	Nonsense_Mutation	17	57288018	C	A	18	66
BRCA	TCGA-AN-A0XU	KCNH6	SNP	Missense_Mutation	17	61619620	G	T	43	98
BRCA	TCGA-AN-A0XU	TP53	DEL	Frame_Shift_Del	17	7577107	ACAGGCACAA	-	10	53
BRCA	TCGA-AN-A0XU	SECTM1	SNP	Nonsense_Mutation	17	80282641	C	A	30	36
BRCA	TCGA-AN-A0XU	PIK3C3	SNP	Missense_Mutation	18	39542488	C	T	22	77
BRCA	TCGA-AN-A0XU	LOXHD1	SNP	Missense_Mutation	18	44104856	C	T	27	98
BRCA	TCGA-AN-A0XU	EPB41L3	SNP	Missense_Mutation	18	5397152	G	C	48	71
BRCA	TCGA-AN-A0XU	DOCK6	DEL	Frame_Shift_Del	19	11348396	T	-	51	85
BRCA	TCGA-AN-A0XU	DAND5	SNP	Missense_Mutation	19	13084353	G	C	44	50
BRCA	TCGA-AN-A0XU	ZNF626	DEL	Frame_Shift_Del	19	20829141	TGTGCAG	-	55	56
BRCA	TCGA-AN-A0XU	URI1	SNP	Missense_Mutation	19	30505914	T	A	50	56
BRCA	TCGA-AN-A0XU	LGI4	SNP	Missense_Mutation	19	35625006	G	A	45	85
BRCA	TCGA-AN-A0XU	WDR62	DEL	In_Frame_Del	19	36593726	TCCTCTCAAGCC	-	62	72
BRCA	TCGA-AN-A0XU	IGFL2	SNP	Missense_Mutation	19	46663943	A	T	11	64
BRCA	TCGA-AN-A0XU	PNMAL1	SNP	Missense_Mutation	19	46973059	C	T	31	69
BRCA	TCGA-AN-A0XU	MYH14	DEL	Frame_Shift_Del	19	50771486	G	-	35	69
BRCA	TCGA-AN-A0XU	C19orf70	SNP	Splice_site	19	5679407	G	C	34	63
BRCA	TCGA-AN-A0XU	ZNF543	SNP	Missense_Mutation	19	57839308	G	C	33	47
BRCA	TCGA-AN-A0XU	MARCO	SNP	Splice_Site	2	119727689	G	A	36	73
BRCA	TCGA-AN-A0XU	KIF5C	SNP	Missense_Mutation	2	149864578	G	C	34	51
BRCA	TCGA-AN-A0XU	SCN3A	SNP	Missense_Mutation	2	166032862	G	A	39	70
BRCA	TCGA-AN-A0XU	XIRP2	SNP	Missense_Mutation	2	168107363	C	A	21	73
BRCA	TCGA-AN-A0XU	TMEFF2	SNP	Missense_Mutation	2	192820999	A	G	8	73
BRCA	TCGA-AN-A0XU	NRP2	SNP	Missense_Mutation	2	206631527	G	T	35	80
BRCA	TCGA-AN-A0XU	TRIP12	SNP	Silent	2	230678609	G	A	34	86
BRCA	TCGA-AN-A0XU	ATG16L1	SNP	Missense_Mutation	2	234172686	A	T	7	52
BRCA	TCGA-AN-A0XU	TMEM178A	SNP	Missense_Mutation	2	39934291	C	A	18	81
BRCA	TCGA-AN-A0XU	SEMA4F	SNP	Missense_Mutation	2	74889932	G	A	39	64
BRCA	TCGA-AN-A0XU	GGCX	SNP	Silent	2	85777243	C	G	29	54
BRCA	TCGA-AN-A0XU	SYCP2	SNP	Splice_Site	20	58467482	C	A	32	74
BRCA	TCGA-AN-A0XU	DOPEY2	SNP	Nonsense_Mutation	21	37612131	G	A	47	96
BRCA	TCGA-AN-A0XU	CSNK1E	SNP	Missense_Mutation	22	38694802	T	A	51	91
BRCA	TCGA-AN-A0XU	TNRC6B	SNP	Missense_Mutation	22	40662003	G	A	40	75
BRCA	TCGA-AN-A0XU	MAGEA3	SNP	Missense_Mutation	23	151935749	C	T	19	45
BRCA	TCGA-AN-A0XU	CNKSR2	SNP	Missense_Mutation	23	21627269	T	G	51	52
BRCA	TCGA-AN-A0XU	PCDH19	SNP	Missense_Mutation	23	99551519	G	T	43	96
BRCA	TCGA-AN-A0XU	STAG1	SNP	Missense_Mutation	3	136078104	T	A	60	93
BRCA	TCGA-AN-A0XU	ESYT3	SNP	Missense_Mutation	3	138183231	G	C	33	54
BRCA	TCGA-AN-A0XU	TNIK	SNP	Silent	3	170819300	C	T	24	55
BRCA	TCGA-AN-A0XU	KBTBD5	SNP	Missense_Mutation	3	42733450	G	T	36	90
BRCA	TCGA-AN-A0XU	ITIH4	DEL	Frame_Shift_Del	3	52858309	C	-	25	56
BRCA	TCGA-AN-A0XU	CCDC112	SNP	Missense_Mutation	5	114603600	C	G	30	80
BRCA	TCGA-AN-A0XU	LOC100287064	SNP	Missense_Mutation	5	14653097	G	T	41	55
BRCA	TCGA-AN-A0XU	AMACR	SNP	Missense_Mutation	5	33989557	A	G	5	93
BRCA	TCGA-AN-A0XU	C6orf170	SNP	Silent	6	121577341	C	G	21	50
BRCA	TCGA-AN-A0XU	GJA1	SNP	Missense_Mutation	6	121768943	A	G	5	88
BRCA	TCGA-AN-A0XU	AHI1	SNP	Silent	6	135787470	A	T	15	52
BRCA	TCGA-AN-A0XU	CNKSR3	SNP	Silent	6	154762480	G	A	45	18
BRCA	TCGA-AN-A0XU	RPP40	SNP	Missense_Mutation	6	5000125	C	A	17	54
BRCA	TCGA-AN-A0XU	BAI3	SNP	Missense_Mutation	6	69349109	C	T	29	67
BRCA	TCGA-AN-A0XU	SLC17A5	SNP	Splice_Site	6	74320122	C	T	19	100
BRCA	TCGA-AN-A0XU	SLC35A1	SNP	Silent	6	88216123	G	T	44	45
BRCA	TCGA-AN-A0XU	ATXN7L1	SNP	Missense_Mutation	7	105283455	G	A	37	74
BRCA	TCGA-AN-A0XU	FLNC	SNP	Silent	7	128496688	C	G	32	56
BRCA	TCGA-AN-A0XU	KEL	SNP	Missense_Mutation	7	142658026	C	T	23	53
BRCA	TCGA-AN-A0XU	UBE3C	DEL	Frame_Shift_Del	7	157046642	TCCCAGGTAGTTGAAC	-	62	57
BRCA	TCGA-AN-A0XU	INMT	SNP	Missense_Mutation	7	30791789	G	A	44	50
BRCA	TCGA-AN-A0XU	MYO1G	DEL	Splice_site	7	45009012	G	-	40	60
BRCA	TCGA-AN-A0XU	C7orf62	INS	Frame_Shift_Ins	7	88423585	-	AACATTTATAAACATTT	21	68
BRCA	TCGA-AN-A0XU	ZHX1	DEL	In_Frame_Del	8	124265811	GTGCTTCAG	-	48	99
BRCA	TCGA-AN-A0XU	CPSF1	SNP	Missense_Mutation	8	145625789	G	T	43	97
BRCA	TCGA-AN-A0XU	C9orf174	SNP	Missense_Mutation	9	100136864	G	A	37	71
BRCA	TCGA-AN-A0XV	RAB3GAP2	SNP	Missense_Mutation	1	220340879	A	G	14	52
BRCA	TCGA-AN-A0XV	GJA4	SNP	Silent	1	35260003	C	T	19	39
BRCA	TCGA-AN-A0XV	RAD54L	SNP	Missense_Mutation	1	46743834	C	A	20	51
BRCA	TCGA-AN-A0XV	INADL	DEL	Frame_Shift_Del	1	62274159	AC	-	10	81
BRCA	TCGA-AN-A0XV	ANKRD16	SNP	Missense_Mutation	10	5930026	G	A	41	93
BRCA	TCGA-AN-A0XV	BARX2	SNP	Missense_Mutation	11	129306679	C	T	31	95
BRCA	TCGA-AN-A0XV	MLEC	SNP	Splice_site	12	121132627	G	T	44	85
BRCA	TCGA-AN-A0XV	CDK2AP1	SNP	Missense_Mutation	12	123751751	G	A	39	95
BRCA	TCGA-AN-A0XV	NEK5	SNP	Missense_Mutation	13	52661583	C	A	19	65
BRCA	TCGA-AN-A0XV	LOC100132247	SNP	Missense_Mutation	16	22545853	C	G	27	34
BRCA	TCGA-AN-A0XV	ITFG1	SNP	Missense_Mutation	16	47252799	C	A	22	83
BRCA	TCGA-AN-A0XV	GNAO1	SNP	Silent	16	56388797	C	T	19	44
BRCA	TCGA-AN-A0XV	CNTNAP4	SNP	Silent	16	76528874	G	A	38	45
BRCA	TCGA-AN-A0XV	SLC5A7	SNP	Silent	2	108604635	G	C	45	58
BRCA	TCGA-AN-A0XV	PSMD1	DEL	Frame_Shift_Del	2	231927025	G	-	40	100
BRCA	TCGA-AN-A0XV	CYP26B1	SNP	Missense_Mutation	2	72361955	C	T	27	97
BRCA	TCGA-AN-A0XV	FASTKD5	SNP	Missense_Mutation	20	3127664	A	C	6	49
BRCA	TCGA-AN-A0XV	C20orf173	SNP	Splice_Site	20	34110500	C	A	18	83
BRCA	TCGA-AN-A0XV	NCAM2	DEL	Frame_Shift_Del	21	22782691	A	-	5	46
BRCA	TCGA-AN-A0XV	FGD5	SNP	Missense_Mutation	3	14861440	G	A	47	75
BRCA	TCGA-AN-A0XV	IL17RD	SNP	Silent	3	57139978	G	A	37	48
BRCA	TCGA-AN-A0XV	COL25A1	SNP	Missense_Mutation	4	109740436	A	G	7	89
BRCA	TCGA-AN-A0XV	LARP1B	SNP	Splice_site	4	129043387	G	C	45	50
BRCA	TCGA-AN-A0XV	DHX15	SNP	Missense_Mutation	4	24542562	A	T	15	90
BRCA	TCGA-AN-A0XV	CEP120	SNP	Nonsense_Mutation	5	122685675	G	A	38	64
BRCA	TCGA-AN-A0XV	PCDHGA11	SNP	Missense_Mutation	5	140801090	C	T	19	48
BRCA	TCGA-AN-A0XV	MYO10	SNP	Missense_Mutation	5	16701598	C	G	28	56
BRCA	TCGA-AN-A0XV	ODZ2	SNP	Silent	5	167545418	C	T	27	58
BRCA	TCGA-AN-A0XV	HEATR7B2	SNP	Missense_Mutation	5	41052602	C	T	17	50
BRCA	TCGA-AN-A0XV	FASTKD3	SNP	Missense_Mutation	5	7867647	C	T	28	71
BRCA	TCGA-AN-A0XV	HACE1	SNP	Missense_Mutation	6	105219210	T	A	52	89
BRCA	TCGA-AN-A0XV	OPRM1	SNP	Missense_Mutation	6	154412132	G	T	47	100
BRCA	TCGA-AN-A0XV	GMDS	SNP	Missense_Mutation	6	2124961	C	G	18	96
BRCA	TCGA-AN-A0XV	HDGFL1	SNP	Silent	6	22569816	C	T	19	59
BRCA	TCGA-AN-A0XV	OR2B3	SNP	Nonsense_Mutation	6	29055016	C	A	30	50
BRCA	TCGA-AN-A0XV	MLL3	SNP	Nonsense_Mutation	7	151945474	G	C	45	55
BRCA	TCGA-AN-A0XV	NFE2L3	SNP	Silent	7	26224284	T	C	58	50
BRCA	TCGA-AN-A0XV	CPNE3	SNP	Splice_Site	8	87559937	A	C	15	90
BRCA	TCGA-AN-A0XV	CNTFR	SNP	Silent	9	34552251	G	A	38	55
BRCA	TCGA-AN-A0XW	CTTNBP2NL	SNP	Missense_Mutation	1	112999921	C	T	29	71
BRCA	TCGA-AN-A0XW	SYCP1	SNP	Missense_Mutation	1	115420781	G	C	33	60
BRCA	TCGA-AN-A0XW	WDR3	SNP	Missense_Mutation	1	118485115	C	G	32	65
BRCA	TCGA-AN-A0XW	SETDB1	SNP	Missense_Mutation	1	150933151	G	C	33	60
BRCA	TCGA-AN-A0XW	THEM5	SNP	Missense_Mutation	1	151820278	C	G	32	58
BRCA	TCGA-AN-A0XW	S100A13	SNP	Silent	1	153598799	G	C	45	65
BRCA	TCGA-AN-A0XW	NUP210L	SNP	Missense_Mutation	1	154072563	G	C	33	47
BRCA	TCGA-AN-A0XW	SHC1	SNP	Missense_Mutation	1	154941864	G	C	45	78
BRCA	TCGA-AN-A0XW	C1orf85	SNP	Missense_Mutation	1	156262865	C	A	32	60
BRCA	TCGA-AN-A0XW	ETV3	SNP	Missense_Mutation	1	157106111	C	T	32	69
BRCA	TCGA-AN-A0XW	SPTA1	SNP	Silent	1	158654937	G	A	33	40
BRCA	TCGA-AN-A0XW	TNFSF4	SNP	Nonsense_Mutation	1	173157704	G	C	45	59
BRCA	TCGA-AN-A0XW	C1orf14	SNP	Missense_Mutation	1	182869343	C	T	29	79
BRCA	TCGA-AN-A0XW	LAMC1	SNP	Missense_Mutation	1	183094653	C	G	32	84
BRCA	TCGA-AN-A0XW	HMCN1	SNP	Missense_Mutation	1	186113455	G	A	46	100
BRCA	TCGA-AN-A0XW	CFHR5	SNP	Silent	1	196963292	G	A	45	60
BRCA	TCGA-AN-A0XW	NAV1	SNP	Missense_Mutation	1	201759887	C	G	32	81
BRCA	TCGA-AN-A0XW	LMOD1	SNP	Silent	1	201868371	G	C	45	65
BRCA	TCGA-AN-A0XW	CNTN2	SNP	Missense_Mutation	1	205031020	C	G	31	73
BRCA	TCGA-AN-A0XW	AVPR1B	SNP	Silent	1	206231046	C	T	29	53
BRCA	TCGA-AN-A0XW	HLX	SNP	Silent	1	221054582	C	G	32	52
BRCA	TCGA-AN-A0XW	DNAH14	SNP	Silent	1	225334811	G	T	45	55
BRCA	TCGA-AN-A0XW	EPHX1	SNP	Silent	1	226019512	C	T	29	49
BRCA	TCGA-AN-A0XW	SIPA1L2	SNP	Missense_Mutation	1	232649933	C	T	30	100
BRCA	TCGA-AN-A0XW	RYR2	SNP	Missense_Mutation	1	237713931	G	A	37	99
BRCA	TCGA-AN-A0XW	ZNF692	SNP	Missense_Mutation	1	249151646	G	A	45	64
BRCA	TCGA-AN-A0XW	CNKSR1	SNP	Missense_Mutation	1	26510895	C	T	32	64
BRCA	TCGA-AN-A0XW	CNKSR1	SNP	Silent	1	26513679	C	T	29	52
BRCA	TCGA-AN-A0XW	CNKSR1	SNP	Silent	1	26514740	C	G	29	55
BRCA	TCGA-AN-A0XW	CATSPER4	SNP	Silent	1	26517876	C	T	29	53
BRCA	TCGA-AN-A0XW	IL23R	SNP	Nonsense_Mutation	1	67666482	C	G	29	60
BRCA	TCGA-AN-A0XW	DMBT1	SNP	Missense_Mutation	10	124380755	C	T	23	52
BRCA	TCGA-AN-A0XW	KIF5B	SNP	Nonsense_Mutation	10	32322814	C	A	29	84
BRCA	TCGA-AN-A0XW	ZNF22	SNP	Silent	10	45499194	C	T	29	51
BRCA	TCGA-AN-A0XW	PTEN	SNP	Missense_Mutation	10	89692900	G	C	35	83
BRCA	TCGA-AN-A0XW	MUC2	SNP	Silent	11	1092240	G	A	33	54
BRCA	TCGA-AN-A0XW	SIK3	SNP	Nonsense_Mutation	11	116732606	G	A	45	82
BRCA	TCGA-AN-A0XW	OR10G8	SNP	Silent	11	123901064	C	T	31	47
BRCA	TCGA-AN-A0XW	FBXO3	SNP	Missense_Mutation	11	33790504	G	C	33	66
BRCA	TCGA-AN-A0XW	TRAF6	SNP	Missense_Mutation	11	36512023	G	C	45	97
BRCA	TCGA-AN-A0XW	NUP160	SNP	Missense_Mutation	11	47828648	G	C	33	81
BRCA	TCGA-AN-A0XW	P2RX3	SNP	Silent	11	57137374	G	A	45	58
BRCA	TCGA-AN-A0XW	OR4D10	SNP	Missense_Mutation	11	59245488	G	C	45	66
BRCA	TCGA-AN-A0XW	SSH3	SNP	Missense_Mutation	11	67077004	G	C	45	66
BRCA	TCGA-AN-A0XW	UHRF1BP1L	SNP	Missense_Mutation	12	100451418	C	T	29	95
BRCA	TCGA-AN-A0XW	GNPTAB	SNP	Missense_Mutation	12	102153831	C	T	30	98
BRCA	TCGA-AN-A0XW	KLRD1	SNP	Splice_site	12	10460676	C	T	29	49
BRCA	TCGA-AN-A0XW	FBXO21	SNP	Silent	12	117603392	C	T	29	50
BRCA	TCGA-AN-A0XW	UNC119B	SNP	Missense_Mutation	12	121157824	G	A	47	100
BRCA	TCGA-AN-A0XW	GTF2H3	SNP	Silent	12	124144425	C	T	32	99
BRCA	TCGA-AN-A0XW	TMEM132D	SNP	Nonsense_Mutation	12	129563234	T	A	64	76
BRCA	TCGA-AN-A0XW	SLC15A5	SNP	Missense_Mutation	12	16430463	C	T	29	97
BRCA	TCGA-AN-A0XW	PIK3C2G	SNP	Missense_Mutation	12	18499655	G	C	33	58
BRCA	TCGA-AN-A0XW	MRPS35	SNP	Missense_Mutation	12	27877070	C	T	29	82
BRCA	TCGA-AN-A0XW	KRT84	SNP	Missense_Mutation	12	52778990	C	G	30	93
BRCA	TCGA-AN-A0XW	KRT6A	SNP	Missense_Mutation	12	52883849	C	T	31	77
BRCA	TCGA-AN-A0XW	KRT71	SNP	Silent	12	52943869	C	T	29	67
BRCA	TCGA-AN-A0XW	ESYT1	SNP	Silent	12	56522358	C	T	31	57
BRCA	TCGA-AN-A0XW	OTOGL	SNP	Missense_Mutation	12	80626730	C	G	32	55
BRCA	TCGA-AN-A0XW	TMTC2	SNP	Silent	12	83289848	C	T	29	48
BRCA	TCGA-AN-A0XW	LOC642846	SNP	Missense_Mutation	12	9440928	G	C	45	74
BRCA	TCGA-AN-A0XW	FAM155A	SNP	Missense_Mutation	13	108518200	C	T	30	97
BRCA	TCGA-AN-A0XW	MYO16	SNP	Missense_Mutation	13	109777624	G	A	45	96
BRCA	TCGA-AN-A0XW	RASA3	SNP	Missense_Mutation	13	114781703	C	G	29	49
BRCA	TCGA-AN-A0XW	MTMR6	SNP	Missense_Mutation	13	25827981	G	A	33	70
BRCA	TCGA-AN-A0XW	FRY	SNP	Nonsense_Mutation	13	32721440	C	T	31	100
BRCA	TCGA-AN-A0XW	SPG20	SNP	Missense_Mutation	13	36888497	C	G	32	53
BRCA	TCGA-AN-A0XW	HTR2A	SNP	Missense_Mutation	13	47409694	C	A	29	63
BRCA	TCGA-AN-A0XW	RTL1	SNP	Missense_Mutation	14	101347967	C	A	29	46
BRCA	TCGA-AN-A0XW	ZNF219	SNP	Missense_Mutation	14	21559617	G	C	33	97
BRCA	TCGA-AN-A0XW	SLC22A17	SNP	Silent	14	23816808	C	T	21	57
BRCA	TCGA-AN-A0XW	ZFHX2	SNP	Silent	14	24003176	G	C	45	60
BRCA	TCGA-AN-A0XW	GMFB	SNP	Nonsense_Mutation	14	54947649	G	A	45	84
BRCA	TCGA-AN-A0XW	KTN1	SNP	Missense_Mutation	14	56116507	C	T	32	84
BRCA	TCGA-AN-A0XW	C14orf38	SNP	Missense_Mutation	14	60041705	C	T	28	64
BRCA	TCGA-AN-A0XW	KCNH5	SNP	Silent	14	63473099	G	A	33	61
BRCA	TCGA-AN-A0XW	RDH11	SNP	Nonsense_Mutation	14	68156953	G	A	47	54
BRCA	TCGA-AN-A0XW	ZC2HC1C	SNP	Silent	14	75537978	G	C	45	48
BRCA	TCGA-AN-A0XW	C14orf102	SNP	Missense_Mutation	14	90778838	C	G	29	94
BRCA	TCGA-AN-A0XW	SERPINA11	SNP	Nonsense_Mutation	14	94912879	C	A	29	60
BRCA	TCGA-AN-A0XW	TUBGCP5	SNP	Missense_Mutation	15	22836070	G	A	45	97
BRCA	TCGA-AN-A0XW	GABRB3	SNP	Missense_Mutation	15	26866582	C	T	29	100
BRCA	TCGA-AN-A0XW	NDNL2	SNP	Silent	15	29561244	G	A	45	48
BRCA	TCGA-AN-A0XW	RYR3	SNP	Silent	15	33928729	C	T	31	46
BRCA	TCGA-AN-A0XW	MGA	SNP	Silent	15	42057208	C	G	32	47
BRCA	TCGA-AN-A0XW	MFAP1	SNP	Missense_Mutation	15	44105315	C	G	30	100
BRCA	TCGA-AN-A0XW	SEMA6D	SNP	Splice_Site	15	48059233	G	C	33	97
BRCA	TCGA-AN-A0XW	FAM214A	SNP	Missense_Mutation	15	52901363	C	G	32	86
BRCA	TCGA-AN-A0XW	UACA	SNP	Missense_Mutation	15	70959869	C	G	29	85
BRCA	TCGA-AN-A0XW	PARP6	SNP	Missense_Mutation	15	72545819	C	G	32	78
BRCA	TCGA-AN-A0XW	PML	SNP	Silent	15	74324915	C	T	23	45
BRCA	TCGA-AN-A0XW	IGF1R	SNP	Missense_Mutation	15	99478099	G	A	45	96
BRCA	TCGA-AN-A0XW	DNAH3	SNP	Silent	16	21078621	C	T	32	62
BRCA	TCGA-AN-A0XW	ZKSCAN2	SNP	Silent	16	25251806	C	T	32	61
BRCA	TCGA-AN-A0XW	CLUAP1	SNP	Missense_Mutation	16	3558457	C	G	32	61
BRCA	TCGA-AN-A0XW	C16orf71	SNP	Translation_Start_Site	16	4786498	C	G	32	59
BRCA	TCGA-AN-A0XW	HYDIN	SNP	Missense_Mutation	16	70969882	C	T	29	41
BRCA	TCGA-AN-A0XW	GLG1	SNP	Missense_Mutation	16	74502875	C	T	27	100
BRCA	TCGA-AN-A0XW	ABAT	SNP	Missense_Mutation	16	8868872	G	A	45	76
BRCA	TCGA-AN-A0XW	MYH4	SNP	Silent	17	10366411	G	C	45	40
BRCA	TCGA-AN-A0XW	DNAH9	SNP	Missense_Mutation	17	11522991	C	G	32	72
BRCA	TCGA-AN-A0XW	TOP3A	SNP	Nonsense_Mutation	17	18205698	C	A	29	72
BRCA	TCGA-AN-A0XW	NF1	SNP	Missense_Mutation	17	29667654	C	G	29	77
BRCA	TCGA-AN-A0XW	NBR1	SNP	Splice_site	17	41362092	G	A	45	95
BRCA	TCGA-AN-A0XW	ACBD4	SNP	Missense_Mutation	17	43214125	G	A	45	74
BRCA	TCGA-AN-A0XW	XYLT2	SNP	Silent	17	48437502	G	A	45	59
BRCA	TCGA-AN-A0XW	RSAD1	SNP	Missense_Mutation	17	48557311	G	C	41	83
BRCA	TCGA-AN-A0XW	CACNA1G	SNP	Nonsense_Mutation	17	48650139	C	G	29	72
BRCA	TCGA-AN-A0XW	LPO	SNP	Missense_Mutation	17	56321423	T	G	56	72
BRCA	TCGA-AN-A0XW	MED13	SNP	Missense_Mutation	17	60040145	G	A	41	95
BRCA	TCGA-AN-A0XW	BCL6B	SNP	Missense_Mutation	17	6928012	G	C	37	67
BRCA	TCGA-AN-A0XW	TTYH2	SNP	Missense_Mutation	17	72249933	G	C	33	53
BRCA	TCGA-AN-A0XW	NAT9	SNP	Missense_Mutation	17	72767888	C	T	32	65
BRCA	TCGA-AN-A0XW	EVPL	SNP	Missense_Mutation	17	74004251	C	G	32	85
BRCA	TCGA-AN-A0XW	ENPP7	SNP	Silent	17	77711776	G	A	38	45
BRCA	TCGA-AN-A0XW	TRAPPC1	SNP	Missense_Mutation	17	7834854	G	C	37	96
BRCA	TCGA-AN-A0XW	TSPAN10	SNP	Silent	17	79609453	G	A	33	51
BRCA	TCGA-AN-A0XW	PTPN2	SNP	Missense_Mutation	18	12836858	C	G	29	99
BRCA	TCGA-AN-A0XW	GREB1L	SNP	Silent	18	18963557	C	T	29	53
BRCA	TCGA-AN-A0XW	NPC1	SNP	Splice_site	18	21127971	C	G	32	99
BRCA	TCGA-AN-A0XW	DNMT1	SNP	Silent	19	10260162	G	A	33	46
BRCA	TCGA-AN-A0XW	ZNF700	SNP	Nonsense_Mutation	19	12059255	C	G	29	66
BRCA	TCGA-AN-A0XW	OR7C1	SNP	Silent	19	14910073	C	G	29	43
BRCA	TCGA-AN-A0XW	OR10H4	SNP	Silent	19	16060444	G	A	45	52
BRCA	TCGA-AN-A0XW	ZNF254	SNP	Silent	19	24309129	G	A	45	59
BRCA	TCGA-AN-A0XW	S1PR4	SNP	Missense_Mutation	19	3179742	G	A	40	66
BRCA	TCGA-AN-A0XW	CLC	SNP	Missense_Mutation	19	40225039	C	G	18	47
BRCA	TCGA-AN-A0XW	ITPKC	SNP	Missense_Mutation	19	41223786	C	G	30	77
BRCA	TCGA-AN-A0XW	CYP2A13	SNP	Missense_Mutation	19	41601698	G	A	33	80
BRCA	TCGA-AN-A0XW	CIC	SNP	Silent	19	42791541	C	G	29	51
BRCA	TCGA-AN-A0XW	ZNF224	SNP	Missense_Mutation	19	44611829	C	G	29	77
BRCA	TCGA-AN-A0XW	SYMPK	SNP	Missense_Mutation	19	46324658	C	T	29	93
BRCA	TCGA-AN-A0XW	PLEKHA4	SNP	Missense_Mutation	19	49348692	G	A	41	76
BRCA	TCGA-AN-A0XW	PPFIA3	SNP	Missense_Mutation	19	49646233	C	T	31	81
BRCA	TCGA-AN-A0XW	PNKP	SNP	Missense_Mutation	19	50364584	G	C	33	64
BRCA	TCGA-AN-A0XW	ZNF677	SNP	Missense_Mutation	19	53740966	C	G	32	59
BRCA	TCGA-AN-A0XW	TFPT	SNP	Missense_Mutation	19	54610364	G	C	33	57
BRCA	TCGA-AN-A0XW	LAIR1	SNP	Missense_Mutation	19	54871673	G	C	33	47
BRCA	TCGA-AN-A0XW	ZNF304	SNP	Missense_Mutation	19	57868151	G	C	33	51
BRCA	TCGA-AN-A0XW	INSR	SNP	Missense_Mutation	19	7163183	G	A	45	79
BRCA	TCGA-AN-A0XW	KIAA1543	SNP	Silent	19	7676771	G	A	33	58
BRCA	TCGA-AN-A0XW	AFF3	SNP	Missense_Mutation	2	100209770	C	G	30	84
BRCA	TCGA-AN-A0XW	GCC2	SNP	Missense_Mutation	2	109088057	C	A	29	79
BRCA	TCGA-AN-A0XW	GREB1	SNP	Silent	2	11720882	C	T	29	66
BRCA	TCGA-AN-A0XW	TANK	SNP	Missense_Mutation	2	162087994	C	G	32	61
BRCA	TCGA-AN-A0XW	TTN	SNP	Missense_Mutation	2	179584439	C	T	32	50
BRCA	TCGA-AN-A0XW	STK17B	SNP	Missense_Mutation	2	197002326	C	T	29	79
BRCA	TCGA-AN-A0XW	TYW5	SNP	Silent	2	200797832	G	C	41	50
BRCA	TCGA-AN-A0XW	SGOL2	SNP	Missense_Mutation	2	201437093	G	C	33	50
BRCA	TCGA-AN-A0XW	NBEAL1	SNP	Missense_Mutation	2	203990152	G	C	33	57
BRCA	TCGA-AN-A0XW	APOB	SNP	Missense_Mutation	2	21231741	C	G	32	69
BRCA	TCGA-AN-A0XW	ATIC	INS	Frame_Shift_Ins	2	216197123	-	A	41	100
BRCA	TCGA-AN-A0XW	CXCR7	SNP	Missense_Mutation	2	237489685	G	A	45	78
BRCA	TCGA-AN-A0XW	LRRFIP1	SNP	Missense_Mutation	2	238664814	G	C	33	88
BRCA	TCGA-AN-A0XW	HDLBP	SNP	Missense_Mutation	2	242186244	C	G	32	100
BRCA	TCGA-AN-A0XW	CENPO	SNP	Silent	2	25039532	C	A	30	52
BRCA	TCGA-AN-A0XW	C2orf16	SNP	Missense_Mutation	2	27803414	G	C	33	51
BRCA	TCGA-AN-A0XW	FOSL2	SNP	Missense_Mutation	2	28626999	C	T	29	98
BRCA	TCGA-AN-A0XW	BIRC6	SNP	Missense_Mutation	2	32836564	G	A	48	98
BRCA	TCGA-AN-A0XW	CYP1B1	SNP	Missense_Mutation	2	38298053	G	C	33	83
BRCA	TCGA-AN-A0XW	ERLEC1	SNP	Missense_Mutation	2	54014442	G	A	37	64
BRCA	TCGA-AN-A0XW	DNAH6	SNP	Missense_Mutation	2	84880876	G	A	45	96
BRCA	TCGA-AN-A0XW	MRPL30	SNP	Missense_Mutation	2	99811355	G	C	33	45
BRCA	TCGA-AN-A0XW	SLC4A11	SNP	Missense_Mutation	20	3210899	C	G	30	99
BRCA	TCGA-AN-A0XW	CEP250	SNP	Missense_Mutation	20	34082384	G	A	41	53
BRCA	TCGA-AN-A0XW	IFNAR1	SNP	Silent	21	34717589	C	T	29	34
BRCA	TCGA-AN-A0XW	TTC3	SNP	Silent	21	38516840	C	T	29	42
BRCA	TCGA-AN-A0XW	HMGN1	SNP	Silent	21	40720242	C	G	31	48
BRCA	TCGA-AN-A0XW	POFUT2	SNP	Silent	21	46697010	G	A	40	50
BRCA	TCGA-AN-A0XW	PRMT2	SNP	Nonsense_Mutation	21	48080771	C	G	29	79
BRCA	TCGA-AN-A0XW	CABIN1	SNP	Nonsense_Mutation	22	24515498	G	T	41	99
BRCA	TCGA-AN-A0XW	NF2	SNP	Silent	22	30077506	G	C	45	47
BRCA	TCGA-AN-A0XW	NF2	SNP	Missense_Mutation	22	30077516	G	A	41	99
BRCA	TCGA-AN-A0XW	PES1	SNP	Missense_Mutation	22	30975192	C	T	32	91
BRCA	TCGA-AN-A0XW	DRG1	SNP	Missense_Mutation	22	31822619	C	G	32	52
BRCA	TCGA-AN-A0XW	APOL2	SNP	Missense_Mutation	22	36624084	G	C	33	69
BRCA	TCGA-AN-A0XW	RAC2	SNP	Silent	22	37628023	G	A	45	58
BRCA	TCGA-AN-A0XW	TCF20	SNP	Missense_Mutation	22	42610881	G	C	33	82
BRCA	TCGA-AN-A0XW	TLR8	SNP	Missense_Mutation	23	12938975	G	A	41	48
BRCA	TCGA-AN-A0XW	FMR1NB	SNP	Silent	23	147063138	C	T	29	46
BRCA	TCGA-AN-A0XW	MAGEA4	SNP	Silent	23	151092820	G	A	45	38
BRCA	TCGA-AN-A0XW	MAGEA4	SNP	Missense_Mutation	23	151092833	G	A	45	62
BRCA	TCGA-AN-A0XW	GABRQ	SNP	Silent	23	151821498	G	A	36	45
BRCA	TCGA-AN-A0XW	PNCK	SNP	Missense_Mutation	23	152937598	G	A	33	48
BRCA	TCGA-AN-A0XW	GPR64	SNP	Missense_Mutation	23	19027881	C	T	29	61
BRCA	TCGA-AN-A0XW	FAM47C	SNP	Missense_Mutation	23	37026598	A	G	11	53
BRCA	TCGA-AN-A0XW	HUWE1	SNP	Missense_Mutation	23	53661226	A	T	3	89
BRCA	TCGA-AN-A0XW	KIF4A	SNP	Missense_Mutation	23	69615617	G	C	33	93
BRCA	TCGA-AN-A0XW	KAL1	SNP	Missense_Mutation	23	8591691	T	G	52	37
BRCA	TCGA-AN-A0XW	MYH15	SNP	Missense_Mutation	3	108112937	C	T	29	67
BRCA	TCGA-AN-A0XW	TF	SNP	Missense_Mutation	3	133476751	G	C	45	46
BRCA	TCGA-AN-A0XW	PCOLCE2	SNP	Nonsense_Mutation	3	142537266	G	A	38	72
BRCA	TCGA-AN-A0XW	PEX5L	SNP	Missense_Mutation	3	179597907	C	A	29	70
BRCA	TCGA-AN-A0XW	CRTAP	SNP	Missense_Mutation	3	33175749	G	A	45	82
BRCA	TCGA-AN-A0XW	MYRIP	SNP	Missense_Mutation	3	40291811	G	T	41	57
BRCA	TCGA-AN-A0XW	ZNF197	SNP	Missense_Mutation	3	44685697	G	C	33	63
BRCA	TCGA-AN-A0XW	CCR2	SNP	Missense_Mutation	3	46399964	C	T	32	55
BRCA	TCGA-AN-A0XW	CDC25A	SNP	Missense_Mutation	3	48224485	C	G	30	50
BRCA	TCGA-AN-A0XW	NCKIPSD	SNP	Missense_Mutation	3	48719900	C	T	29	91
BRCA	TCGA-AN-A0XW	CACNA2D2	SNP	Splice_site	3	50415439	C	G	21	99
BRCA	TCGA-AN-A0XW	GLYCTK	SNP	Missense_Mutation	3	52327124	G	C	48	50
BRCA	TCGA-AN-A0XW	ERC2	SNP	Missense_Mutation	3	56173584	C	G	32	100
BRCA	TCGA-AN-A0XW	FAM116A	SNP	Nonsense_Mutation	3	57632137	G	A	45	100
BRCA	TCGA-AN-A0XW	CADPS	SNP	Missense_Mutation	3	62423808	C	T	29	100
BRCA	TCGA-AN-A0XW	ROBO1	SNP	Missense_Mutation	3	78710205	G	C	45	58
BRCA	TCGA-AN-A0XW	GBE1	SNP	Silent	3	81692075	G	A	41	53
BRCA	TCGA-AN-A0XW	C4orf3	SNP	Missense_Mutation	4	120221638	C	G	31	58
BRCA	TCGA-AN-A0XW	BOD1L1	SNP	Missense_Mutation	4	13601173	C	T	32	49
BRCA	TCGA-AN-A0XW	CPEB2	SNP	Silent	4	15054051	C	G	32	55
BRCA	TCGA-AN-A0XW	C4orf40	SNP	Missense_Mutation	4	71024408	G	C	45	51
BRCA	TCGA-AN-A0XW	C4orf35	SNP	Missense_Mutation	4	71201591	G	A	33	61
BRCA	TCGA-AN-A0XW	WDFY3	SNP	Silent	4	85758097	C	T	32	83
BRCA	TCGA-AN-A0XW	MCC	SNP	Silent	5	112406916	G	T	45	59
BRCA	TCGA-AN-A0XW	DMXL1	SNP	Nonsense_Mutation	5	118482538	C	G	29	48
BRCA	TCGA-AN-A0XW	DMXL1	SNP	Missense_Mutation	5	118569138	G	C	45	66
BRCA	TCGA-AN-A0XW	SNX2	SNP	Missense_Mutation	5	122154620	G	C	41	100
BRCA	TCGA-AN-A0XW	ZNF608	SNP	Missense_Mutation	5	124080411	G	A	33	85
BRCA	TCGA-AN-A0XW	RAD50	SNP	Missense_Mutation	5	131925407	G	A	45	96
BRCA	TCGA-AN-A0XW	HSPA4	SNP	Missense_Mutation	5	132403197	C	G	32	76
BRCA	TCGA-AN-A0XW	ETF1	SNP	Missense_Mutation	5	137846256	C	G	32	86
BRCA	TCGA-AN-A0XW	CTNNA1	SNP	Missense_Mutation	5	138223329	G	C	45	99
BRCA	TCGA-AN-A0XW	PCDHA13	SNP	Silent	5	140358575	G	C	45	51
BRCA	TCGA-AN-A0XW	PCDHB8	SNP	Silent	5	140560003	C	T	29	50
BRCA	TCGA-AN-A0XW	PCDHGA11	SNP	Missense_Mutation	5	140801497	G	C	37	99
BRCA	TCGA-AN-A0XW	ARHGAP26	SNP	Missense_Mutation	5	142283177	G	C	45	98
BRCA	TCGA-AN-A0XW	PCYOX1L	SNP	Missense_Mutation	5	148743738	G	T	33	88
BRCA	TCGA-AN-A0XW	LMAN2	SNP	Missense_Mutation	5	176778543	G	C	33	59
BRCA	TCGA-AN-A0XW	C7	SNP	Missense_Mutation	5	40936479	C	T	32	64
BRCA	TCGA-AN-A0XW	ZNF131	SNP	Missense_Mutation	5	43161888	G	C	41	67
BRCA	TCGA-AN-A0XW	CMYA5	SNP	Missense_Mutation	5	79032398	G	A	33	57
BRCA	TCGA-AN-A0XW	ZCCHC9	SNP	Missense_Mutation	5	80600664	G	C	45	74
BRCA	TCGA-AN-A0XW	ASCC3	SNP	Missense_Mutation	6	101054655	C	G	29	88
BRCA	TCGA-AN-A0XW	SYNE1	SNP	Missense_Mutation	6	152671773	C	T	30	77
BRCA	TCGA-AN-A0XW	PLG	SNP	Silent	6	161128786	G	A	41	51
BRCA	TCGA-AN-A0XW	PLG	SNP	Missense_Mutation	6	161160215	G	C	33	87
BRCA	TCGA-AN-A0XW	KIF13A	SNP	Missense_Mutation	6	17855684	G	C	33	100
BRCA	TCGA-AN-A0XW	HIST1H2AB	SNP	Missense_Mutation	6	26033520	C	T	30	99
BRCA	TCGA-AN-A0XW	HLA-G	SNP	Missense_Mutation	6	29797308	G	A	47	55
BRCA	TCGA-AN-A0XW	FTSJD2	SNP	Splice_site	6	37447030	C	T	29	82
BRCA	TCGA-AN-A0XW	IRF4	SNP	Missense_Mutation	6	394891	G	T	38	100
BRCA	TCGA-AN-A0XW	DDX43	SNP	Missense_Mutation	6	74104715	G	T	41	70
BRCA	TCGA-AN-A0XW	MOSPD3	SNP	Silent	7	100212575	C	G	30	50
BRCA	TCGA-AN-A0XW	MUC17	SNP	Nonsense_Mutation	7	100678770	C	G	29	51
BRCA	TCGA-AN-A0XW	FLNC	SNP	Missense_Mutation	7	128491678	C	G	29	78
BRCA	TCGA-AN-A0XW	MEST	SNP	Missense_Mutation	7	130140330	C	G	18	89
BRCA	TCGA-AN-A0XW	EZH2	SNP	Nonsense_Mutation	7	148508733	G	C	45	100
BRCA	TCGA-AN-A0XW	TMEM196	SNP	Silent	7	19761719	C	G	29	51
BRCA	TCGA-AN-A0XW	HOXA2	SNP	Missense_Mutation	7	27140466	G	A	45	95
BRCA	TCGA-AN-A0XW	STK17A	SNP	Missense_Mutation	7	43663366	G	C	45	52
BRCA	TCGA-AN-A0XW	ABCB4	SNP	Silent	7	87042989	C	T	29	53
BRCA	TCGA-AN-A0XW	C7orf62	SNP	Missense_Mutation	7	88423641	C	G	29	80
BRCA	TCGA-AN-A0XW	BAIAP2L1	SNP	Silent	7	97933661	G	A	39	3
BRCA	TCGA-AN-A0XW	EIF3E	SNP	Missense_Mutation	8	109215698	C	T	32	98
BRCA	TCGA-AN-A0XW	TTC35	SNP	Silent	8	109455911	C	T	19	63
BRCA	TCGA-AN-A0XW	COL14A1	SNP	Missense_Mutation	8	121256230	C	T	30	81
BRCA	TCGA-AN-A0XW	FER1L6	SNP	Missense_Mutation	8	125035808	G	A	46	100
BRCA	TCGA-AN-A0XW	KIAA0196	SNP	Silent	8	126073342	C	T	29	47
BRCA	TCGA-AN-A0XW	ZC3H3	SNP	Missense_Mutation	8	144621122	A	C	11	50
BRCA	TCGA-AN-A0XW	MYOM2	SNP	Missense_Mutation	8	2000284	C	A	30	56
BRCA	TCGA-AN-A0XW	FSBP	SNP	Nonsense_Mutation	8	95423541	G	C	45	50
BRCA	TCGA-AN-A0XW	C9orf174	SNP	Missense_Mutation	9	100074413	G	C	33	52
BRCA	TCGA-AN-A0XW	FKTN	SNP	Missense_Mutation	9	108370197	G	C	45	91
BRCA	TCGA-AN-A0XW	ZNF462	SNP	Missense_Mutation	9	109687510	C	G	30	66
BRCA	TCGA-AN-A0XW	SVEP1	SNP	Missense_Mutation	9	113233667	G	A	45	97
BRCA	TCGA-AN-A0XW	C5	SNP	Missense_Mutation	9	123779994	C	T	30	90
BRCA	TCGA-AN-A0XW	CNTRL	SNP	Silent	9	123880758	G	A	33	60
BRCA	TCGA-AN-A0XW	RC3H2	SNP	Nonsense_Mutation	9	125616341	G	A	45	74
BRCA	TCGA-AN-A0XW	PKN3	SNP	Nonsense_Mutation	9	131476875	G	T	33	79
BRCA	TCGA-AN-A0XW	PKN3	SNP	Missense_Mutation	9	131477131	G	A	34	62
BRCA	TCGA-AN-A0XW	PKN3	SNP	Missense_Mutation	9	131479161	G	A	45	92
BRCA	TCGA-AN-A0XW	TMEM8C	SNP	Silent	9	136380724	C	T	32	61
BRCA	TCGA-AN-A0XW	NTRK2	SNP	Missense_Mutation	9	87342871	G	A	37	62
BRCA	TCGA-AN-A0XW	IARS	SNP	Missense_Mutation	9	95033329	C	G	29	51
BRCA	TCGA-AO-A03L	PYHIN1	SNP	Missense_Mutation	1	158912143	A	T	1	48
BRCA	TCGA-AO-A03L	PRRX1	SNP	Nonsense_Mutation	1	170695522	G	A	43	94
BRCA	TCGA-AO-A03L	MCOLN3	SNP	Missense_Mutation	1	85491733	T	G	56	49
BRCA	TCGA-AO-A03L	KRT1	SNP	Missense_Mutation	12	53072333	G	A	39	61
BRCA	TCGA-AO-A03L	PTPRB	SNP	Missense_Mutation	12	71029633	G	T	46	88
BRCA	TCGA-AO-A03L	UBN1	SNP	Missense_Mutation	16	4920242	G	A	36	67
BRCA	TCGA-AO-A03L	TP53	SNP	Splice_Site	17	7577498	C	T	18	92
BRCA	TCGA-AO-A03L	SERPINB8	SNP	Missense_Mutation	18	61654433	C	A	25	77
BRCA	TCGA-AO-A03L	KCNA7	DEL	Frame_Shift_Del	19	49573837	AC	-	10	87
BRCA	TCGA-AO-A03L	KLF11	SNP	Missense_Mutation	2	10188252	A	G	4	56
BRCA	TCGA-AO-A03L	XRN2	SNP	Missense_Mutation	20	21307234	G	A	47	97
BRCA	TCGA-AO-A03L	PAK7	SNP	Silent	20	9520175	T	C	51	39
BRCA	TCGA-AO-A03L	ESX1	SNP	Silent	23	103499462	G	A	37	34
BRCA	TCGA-AO-A03L	MECP2	SNP	Missense_Mutation	23	153296385	C	G	32	67
BRCA	TCGA-AO-A03L	DDX3X	SNP	Missense_Mutation	23	41201888	C	T	21	82
BRCA	TCGA-AO-A03L	CBLB	SNP	Missense_Mutation	3	105572448	T	C	49	92
BRCA	TCGA-AO-A03L	GOLGB1	SNP	Missense_Mutation	3	121410367	G	C	33	59
BRCA	TCGA-AO-A03L	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-AO-A03L	SETD7	SNP	Splice_site	4	140450374	C	T	30	98
BRCA	TCGA-AO-A03L	ANK1	SNP	Missense_Mutation	8	41554016	G	A	40	86
BRCA	TCGA-AO-A03L	LOC642406	SNP	Missense_Mutation	9	40582267	C	T	31	53
BRCA	TCGA-AO-A03N	NOTCH2	SNP	Missense_Mutation	1	120484236	G	C	33	77
BRCA	TCGA-AO-A03N	HRNR	SNP	Missense_Mutation	1	152191378	A	C	8	38
BRCA	TCGA-AO-A03N	DCST1	SNP	Missense_Mutation	1	155018896	G	C	41	80
BRCA	TCGA-AO-A03N	RCSD1	SNP	Silent	1	167666641	C	T	19	19
BRCA	TCGA-AO-A03N	KIF14	SNP	Missense_Mutation	1	200584610	G	T	45	75
BRCA	TCGA-AO-A03N	ECE1	SNP	Missense_Mutation	1	21599264	C	T	29	99
BRCA	TCGA-AO-A03N	PCNXL2	SNP	Missense_Mutation	1	233388221	C	G	32	42
BRCA	TCGA-AO-A03N	LYST	SNP	Missense_Mutation	1	235969927	G	A	41	68
BRCA	TCGA-AO-A03N	C1orf101	SNP	Missense_Mutation	1	244681976	C	G	32	42
BRCA	TCGA-AO-A03N	KIF26B	SNP	Missense_Mutation	1	245861453	C	T	32	96
BRCA	TCGA-AO-A03N	KLHL17	DEL	Frame_Shift_Del	1	898155	GGTGAGG	-	47	59
BRCA	TCGA-AO-A03N	GSTO1	SNP	Silent	10	106014943	C	T	30	54
BRCA	TCGA-AO-A03N	WDR37	SNP	Missense_Mutation	10	1118202	C	T	19	72
BRCA	TCGA-AO-A03N	LOC100288295	SNP	Missense_Mutation	10	69571224	C	G	32	52
BRCA	TCGA-AO-A03N	SRPR	SNP	Missense_Mutation	11	126136666	C	A	32	48
BRCA	TCGA-AO-A03N	ETS1	SNP	Missense_Mutation	11	128332356	C	T	27	100
BRCA	TCGA-AO-A03N	MS4A14	SNP	Missense_Mutation	11	60183854	G	C	41	76
BRCA	TCGA-AO-A03N	OR6A2	SNP	Missense_Mutation	11	6816144	G	A	37	64
BRCA	TCGA-AO-A03N	LRRC32	SNP	Silent	11	76372514	G	C	41	40
BRCA	TCGA-AO-A03N	GAB2	SNP	Missense_Mutation	11	77930333	C	G	24	63
BRCA	TCGA-AO-A03N	TAS2R42	SNP	Silent	12	11338818	G	A	33	49
BRCA	TCGA-AO-A03N	ANAPC5	SNP	Missense_Mutation	12	121757513	C	G	32	95
BRCA	TCGA-AO-A03N	NOC4L	SNP	Splice_site	12	132636742	G	T	35	62
BRCA	TCGA-AO-A03N	C12orf36	SNP	Missense_Mutation	12	13529218	C	T	31	49
BRCA	TCGA-AO-A03N	RERG	SNP	Missense_Mutation	12	15262253	C	T	32	97
BRCA	TCGA-AO-A03N	ASUN	SNP	Silent	12	27068941	C	G	30	59
BRCA	TCGA-AO-A03N	FKBP11	SNP	Missense_Mutation	12	49315850	G	A	45	65
BRCA	TCGA-AO-A03N	KRT82	SNP	Silent	12	52795130	G	A	40	37
BRCA	TCGA-AO-A03N	PPP1R1A	SNP	Missense_Mutation	12	54974805	C	T	31	54
BRCA	TCGA-AO-A03N	USPL1	SNP	Silent	13	31233476	C	T	32	58
BRCA	TCGA-AO-A03N	KL	SNP	Missense_Mutation	13	33638277	C	G	30	63
BRCA	TCGA-AO-A03N	TGDS	SNP	Missense_Mutation	13	95232200	A	G	2	58
BRCA	TCGA-AO-A03N	CLEC14A	SNP	Missense_Mutation	14	38724315	G	A	38	48
BRCA	TCGA-AO-A03N	SLC8A3	SNP	Missense_Mutation	14	70634913	C	A	24	98
BRCA	TCGA-AO-A03N	BUB1B	SNP	Silent	15	40498522	G	A	33	56
BRCA	TCGA-AO-A03N	FBN1	SNP	Missense_Mutation	15	48800793	C	T	30	86
BRCA	TCGA-AO-A03N	MEGF11	SNP	Silent	15	66206079	G	A	33	49
BRCA	TCGA-AO-A03N	SCAPER	SNP	Missense_Mutation	15	76726583	C	G	29	70
BRCA	TCGA-AO-A03N	IFT140	SNP	Missense_Mutation	16	1608111	C	T	31	52
BRCA	TCGA-AO-A03N	ITPRIPL2	SNP	Silent	16	19126677	C	T	19	60
BRCA	TCGA-AO-A03N	APOBR	SNP	Missense_Mutation	16	28507365	G	A	41	52
BRCA	TCGA-AO-A03N	ALDOA	SNP	Missense_Mutation	16	30080931	C	T	29	57
BRCA	TCGA-AO-A03N	RNF40	SNP	Missense_Mutation	16	30783268	G	C	33	96
BRCA	TCGA-AO-A03N	BCKDK	SNP	Missense_Mutation	16	31123564	G	T	39	73
BRCA	TCGA-AO-A03N	SLC5A2	SNP	Silent	16	31496154	C	G	32	53
BRCA	TCGA-AO-A03N	MYLK3	SNP	Missense_Mutation	16	46771693	G	C	45	53
BRCA	TCGA-AO-A03N	C17orf78	SNP	Nonsense_Mutation	17	35736110	C	T	29	55
BRCA	TCGA-AO-A03N	SYNRG	SNP	Missense_Mutation	17	35900635	C	G	32	55
BRCA	TCGA-AO-A03N	KRT25	SNP	Silent	17	38907420	C	T	32	42
BRCA	TCGA-AO-A03N	PLD2	SNP	Silent	17	4711091	C	T	32	51
BRCA	TCGA-AO-A03N	LLGL2	SNP	Silent	17	73564696	C	T	19	49
BRCA	TCGA-AO-A03N	TP53	SNP	Missense_Mutation	17	7578449	C	T	26	60
BRCA	TCGA-AO-A03N	LOC729774	SNP	Silent	18	14361862	G	A	38	51
BRCA	TCGA-AO-A03N	ZNF69	SNP	Missense_Mutation	19	12016630	C	G	32	54
BRCA	TCGA-AO-A03N	RPS16	SNP	Silent	19	39924348	G	T	41	65
BRCA	TCGA-AO-A03N	SYNGR4	SNP	Missense_Mutation	19	48869187	G	A	37	54
BRCA	TCGA-AO-A03N	ADAMTS10	SNP	Missense_Mutation	19	8670241	C	T	29	95
BRCA	TCGA-AO-A03N	FBXL12	SNP	Missense_Mutation	19	9922014	G	A	37	65
BRCA	TCGA-AO-A03N	RGPD3	SNP	Missense_Mutation	2	107040417	C	G	29	84
BRCA	TCGA-AO-A03N	CNTNAP5	SNP	Missense_Mutation	2	125547707	T	G	64	57
BRCA	TCGA-AO-A03N	GPR155	SNP	Splice_Site	2	175311476	C	T	32	85
BRCA	TCGA-AO-A03N	MAP2	SNP	Missense_Mutation	2	210560177	G	C	45	79
BRCA	TCGA-AO-A03N	IQCA1	SNP	Missense_Mutation	2	237233390	C	A	25	58
BRCA	TCGA-AO-A03N	RTN4	SNP	Missense_Mutation	2	55252534	C	A	25	54
BRCA	TCGA-AO-A03N	ENSG00000188971	SNP	Missense_Mutation	2	69692925	G	A	47	54
BRCA	TCGA-AO-A03N	KIF3B	SNP	Missense_Mutation	20	30898419	C	T	32	97
BRCA	TCGA-AO-A03N	PRIC285	SNP	Silent	20	62191561	G	A	37	49
BRCA	TCGA-AO-A03N	SLC5A3	SNP	Missense_Mutation	21	35467894	C	G	32	100
BRCA	TCGA-AO-A03N	SLC37A1	SNP	Missense_Mutation	21	43967216	C	T	23	74
BRCA	TCGA-AO-A03N	LOC729526	SNP	Silent	22	21435233	C	T	32	60
BRCA	TCGA-AO-A03N	CACNA1I	SNP	Silent	22	40075816	C	A	32	69
BRCA	TCGA-AO-A03N	RAB33A	SNP	Missense_Mutation	23	129306147	C	G	29	58
BRCA	TCGA-AO-A03N	GPR119	SNP	Silent	23	129518882	G	C	33	58
BRCA	TCGA-AO-A03N	WNK3	SNP	Missense_Mutation	23	54275569	G	A	35	53
BRCA	TCGA-AO-A03N	AR	SNP	Nonsense_Mutation	23	66931346	C	G	29	71
BRCA	TCGA-AO-A03N	OPHN1	SNP	Nonsense_Mutation	23	67414316	G	A	48	72
BRCA	TCGA-AO-A03N	CBLB	SNP	Missense_Mutation	3	105586395	G	T	44	60
BRCA	TCGA-AO-A03N	CP	SNP	Missense_Mutation	3	148894046	G	T	48	55
BRCA	TCGA-AO-A03N	ZFYVE20	SNP	Silent	3	15115823	G	A	42	59
BRCA	TCGA-AO-A03N	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-AO-A03N	LIMD1	SNP	Missense_Mutation	3	45636504	C	T	31	54
BRCA	TCGA-AO-A03N	FYCO1	SNP	Silent	3	46007805	C	G	29	69
BRCA	TCGA-AO-A03N	TRPC3	SNP	Missense_Mutation	4	122853847	C	T	27	100
BRCA	TCGA-AO-A03N	JAKMIP1	SNP	Silent	4	6114530	C	T	23	43
BRCA	TCGA-AO-A03N	P4HA2	SNP	Missense_Mutation	5	131533908	G	T	33	66
BRCA	TCGA-AO-A03N	C7	SNP	Missense_Mutation	5	40959673	G	A	33	73
BRCA	TCGA-AO-A03N	ADAMTS6	SNP	Missense_Mutation	5	64511230	G	A	34	98
BRCA	TCGA-AO-A03N	HIVEP1	SNP	Silent	6	12164532	G	A	45	53
BRCA	TCGA-AO-A03N	C6orf58	SNP	Missense_Mutation	6	127898402	T	A	50	45
BRCA	TCGA-AO-A03N	L3MBTL3	SNP	Nonsense_Mutation	6	130392142	C	T	31	80
BRCA	TCGA-AO-A03N	MTHFD1L	SNP	Missense_Mutation	6	151281482	G	A	45	100
BRCA	TCGA-AO-A03N	MAP3K4	SNP	Nonsense_Mutation	6	161507647	C	G	29	97
BRCA	TCGA-AO-A03N	POM121L2	SNP	Missense_Mutation	6	27278174	C	T	29	50
BRCA	TCGA-AO-A03N	PFDN6	SNP	Silent	6	33258201	G	A	33	65
BRCA	TCGA-AO-A03N	MAPK14	SNP	Silent	6	36040654	C	T	32	73
BRCA	TCGA-AO-A03N	PGK2	SNP	Silent	6	49754484	C	T	32	68
BRCA	TCGA-AO-A03N	IMPG1	SNP	Missense_Mutation	6	76744474	C	T	23	98
BRCA	TCGA-AO-A03N	DOPEY1	SNP	Missense_Mutation	6	83830462	C	G	32	60
BRCA	TCGA-AO-A03N	RELN	SNP	Silent	7	103130322	C	T	32	73
BRCA	TCGA-AO-A03N	LAMB1	SNP	Missense_Mutation	7	107626640	C	T	29	100
BRCA	TCGA-AO-A03N	STEAP1B	SNP	Missense_Mutation	7	22533058	C	T	32	76
BRCA	TCGA-AO-A03N	GGCT	SNP	Nonsense_Mutation	7	30538452	G	C	40	48
BRCA	TCGA-AO-A03N	VPS41	SNP	Missense_Mutation	7	38807156	C	T	32	91
BRCA	TCGA-AO-A03N	GCK	SNP	Silent	7	44228544	G	A	40	49
BRCA	TCGA-AO-A03N	NSUN5	SNP	Missense_Mutation	7	72717985	G	T	39	51
BRCA	TCGA-AO-A03N	ABCB1	SNP	Silent	7	87179586	C	T	25	55
BRCA	TCGA-AO-A03N	NSMCE2	SNP	Missense_Mutation	8	126194375	G	C	33	70
BRCA	TCGA-AO-A03N	DLC1	SNP	Nonsense_Mutation	8	13072274	G	T	45	63
BRCA	TCGA-AO-A03N	BAI1	SNP	Missense_Mutation	8	143602279	G	T	38	75
BRCA	TCGA-AO-A03N	CYP7B1	SNP	Missense_Mutation	8	65527712	G	A	38	68
BRCA	TCGA-AO-A03N	LPAR1	SNP	Missense_Mutation	9	113637855	C	T	27	100
BRCA	TCGA-AO-A03N	GALT	SNP	Missense_Mutation	9	34648780	G	C	45	64
BRCA	TCGA-AO-A03O	ASH1L	SNP	Missense_Mutation	1	155451295	G	C	35	49
BRCA	TCGA-AO-A03O	PBX1	SNP	Missense_Mutation	1	164776849	A	T	5	92
BRCA	TCGA-AO-A03O	GPR26	SNP	Nonsense_Mutation	10	125447554	C	T	27	58
BRCA	TCGA-AO-A03O	ERCC6	SNP	Missense_Mutation	10	50684343	C	T	19	85
BRCA	TCGA-AO-A03O	CDON	SNP	Missense_Mutation	11	125880247	G	C	33	66
BRCA	TCGA-AO-A03O	OR5AK2	SNP	Missense_Mutation	11	56757155	C	T	32	55
BRCA	TCGA-AO-A03O	TRIM5	DEL	In_Frame_Del	11	5686577	TCAGAA	-	62	47
BRCA	TCGA-AO-A03O	FOLR3	SNP	Silent	11	71850076	C	T	23	52
BRCA	TCGA-AO-A03O	SLCO1B3	SNP	Missense_Mutation	12	21033820	C	G	18	56
BRCA	TCGA-AO-A03O	ADAMTS20	SNP	Missense_Mutation	12	43824186	C	T	25	98
BRCA	TCGA-AO-A03O	TFCP2	SNP	Nonsense_Mutation	12	51501078	G	A	40	54
BRCA	TCGA-AO-A03O	KRT1	SNP	Missense_Mutation	12	53071201	G	A	39	77
BRCA	TCGA-AO-A03O	USP15	SNP	Missense_Mutation	12	62749215	A	G	3	74
BRCA	TCGA-AO-A03O	PLXNC1	SNP	Silent	12	94563009	C	T	25	68
BRCA	TCGA-AO-A03O	KLHL28	SNP	Missense_Mutation	14	45414398	C	T	19	97
BRCA	TCGA-AO-A03O	LCMT2	SNP	Missense_Mutation	15	43621247	G	A	38	51
BRCA	TCGA-AO-A03O	TP53BP1	SNP	Missense_Mutation	15	43708431	A	C	12	90
BRCA	TCGA-AO-A03O	SIN3A	SNP	Missense_Mutation	15	75688794	A	G	7	92
BRCA	TCGA-AO-A03O	ZNF592	SNP	Silent	15	85345501	A	G	7	46
BRCA	TCGA-AO-A03O	KIAA0430	SNP	Missense_Mutation	16	15724259	T	A	51	94
BRCA	TCGA-AO-A03O	TMC5	SNP	Missense_Mutation	16	19490813	T	A	54	51
BRCA	TCGA-AO-A03O	RBFOX1	SNP	Missense_Mutation	16	7629860	C	T	27	54
BRCA	TCGA-AO-A03O	SPECC1	SNP	Missense_Mutation	17	20135652	G	A	39	63
BRCA	TCGA-AO-A03O	ACACA	SNP	Nonsense_Mutation	17	35641834	G	A	39	67
BRCA	TCGA-AO-A03O	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-AO-A03O	ENGASE	SNP	Splice_site	17	77079103	C	T	31	98
BRCA	TCGA-AO-A03O	NARF	SNP	Missense_Mutation	17	80436693	G	A	37	97
BRCA	TCGA-AO-A03O	ZNF532	SNP	Missense_Mutation	18	56586762	G	A	40	69
BRCA	TCGA-AO-A03O	RGL3	SNP	Silent	19	11512791	G	C	43	55
BRCA	TCGA-AO-A03O	ASF1B	SNP	Silent	19	14232440	A	G	8	34
BRCA	TCGA-AO-A03O	SYMPK	SNP	Missense_Mutation	19	46330823	C	T	27	73
BRCA	TCGA-AO-A03O	FPR3	SNP	Missense_Mutation	19	52327516	G	A	43	51
BRCA	TCGA-AO-A03O	MFSD9	SNP	Missense_Mutation	2	103334999	C	G	24	55
BRCA	TCGA-AO-A03O	FIGN	SNP	Missense_Mutation	2	164466086	G	C	48	64
BRCA	TCGA-AO-A03O	FEZ2	SNP	Silent	2	36808464	G	C	45	33
BRCA	TCGA-AO-A03O	RBBP9	SNP	Missense_Mutation	20	18474608	G	T	42	82
BRCA	TCGA-AO-A03O	MYLK2	SNP	Missense_Mutation	20	30419936	G	T	41	96
BRCA	TCGA-AO-A03O	RUNX1	DEL	Frame_Shift_Del	21	36206845	CGGAAAAGGACAAGCTC	-	31	71
BRCA	TCGA-AO-A03O	MCM3AP	SNP	Missense_Mutation	21	47664999	C	T	27	72
BRCA	TCGA-AO-A03O	MICAL3	SNP	Missense_Mutation	22	18384696	C	A	20	54
BRCA	TCGA-AO-A03O	SFI1	DEL	Frame_Shift_Del	22	31971257	ATAC	-	16	41
BRCA	TCGA-AO-A03O	ARMCX2	SNP	Missense_Mutation	23	100910988	C	G	29	58
BRCA	TCGA-AO-A03O	MAGEA11	SNP	Splice_Site	23	148770497	G	T	35	44
BRCA	TCGA-AO-A03O	ZFP92	SNP	Missense_Mutation	23	152686287	G	A	39	55
BRCA	TCGA-AO-A03O	GPR64	SNP	Missense_Mutation	23	19017264	C	G	22	80
BRCA	TCGA-AO-A03O	CD99	SNP	Missense_Mutation	23	2641359	A	T	3	41
BRCA	TCGA-AO-A03O	FAM47C	SNP	Missense_Mutation	23	37027607	T	A	59	43
BRCA	TCGA-AO-A03O	USP11	SNP	Silent	23	47104088	C	T	19	38
BRCA	TCGA-AO-A03O	UBQLN2	SNP	Silent	23	56592010	T	G	55	58
BRCA	TCGA-AO-A03O	LAS1L	SNP	Missense_Mutation	23	64737980	C	G	32	54
BRCA	TCGA-AO-A03O	DGAT2L6	SNP	Silent	23	69424167	C	G	30	48
BRCA	TCGA-AO-A03O	ATRX	SNP	Missense_Mutation	23	76912112	A	T	9	54
BRCA	TCGA-AO-A03O	ATP7A	SNP	Missense_Mutation	23	77289124	G	C	43	100
BRCA	TCGA-AO-A03O	CNTN6	SNP	Missense_Mutation	3	1369212	A	T	4	49
BRCA	TCGA-AO-A03O	TMEM43	SNP	Silent	3	14170983	G	A	42	50
BRCA	TCGA-AO-A03O	PIK3CA	DEL	In_Frame_Del	3	178916944	AAGATCCTC	-	1	89
BRCA	TCGA-AO-A03O	TRA2B	SNP	Splice_Site	3	185641773	C	G	24	86
BRCA	TCGA-AO-A03O	VGLL3	SNP	Missense_Mutation	3	87017995	G	A	38	64
BRCA	TCGA-AO-A03O	INPP4B	SNP	Missense_Mutation	4	143181675	C	T	23	52
BRCA	TCGA-AO-A03O	SFRP2	SNP	Silent	4	154709541	G	A	40	54
BRCA	TCGA-AO-A03O	ADAM29	SNP	Missense_Mutation	4	175897349	C	A	32	35
BRCA	TCGA-AO-A03O	GABRG1	SNP	Silent	4	46060587	T	C	56	64
BRCA	TCGA-AO-A03O	UBA6	SNP	Missense_Mutation	4	68543381	G	A	33	91
BRCA	TCGA-AO-A03O	AQPEP	SNP	Silent	5	115298425	C	T	19	54
BRCA	TCGA-AO-A03O	CDC42SE2	SNP	Silent	5	130726778	G	A	39	8
BRCA	TCGA-AO-A03O	UBE2D2	SNP	Missense_Mutation	5	138994342	C	T	22	100
BRCA	TCGA-AO-A03O	PCDHGA3	SNP	Silent	5	140724179	G	A	34	51
BRCA	TCGA-AO-A03O	OSMR	SNP	Missense_Mutation	5	38885552	A	C	13	48
BRCA	TCGA-AO-A03O	ZNF366	SNP	Missense_Mutation	5	71752236	A	T	8	92
BRCA	TCGA-AO-A03O	SEMA5A	SNP	Missense_Mutation	5	9063053	G	T	42	69
BRCA	TCGA-AO-A03O	ASCC3	SNP	Missense_Mutation	6	101073157	G	A	40	71
BRCA	TCGA-AO-A03O	HTR1B	SNP	Silent	6	78172233	G	A	40	65
BRCA	TCGA-AO-A03O	PIP5K1P1	SNP	Silent	6	7986937	C	T	31	26
BRCA	TCGA-AO-A03O	MLL5	DEL	In_Frame_Del	7	104752839	CCTCCACCT	-	22	84
BRCA	TCGA-AO-A03O	KIAA0895	SNP	Missense_Mutation	7	36396564	G	C	33	63
BRCA	TCGA-AO-A03O	PON2	SNP	Missense_Mutation	7	95041063	G	T	44	63
BRCA	TCGA-AO-A03O	VPS13B	SNP	Missense_Mutation	8	100160153	T	C	60	86
BRCA	TCGA-AO-A03O	IARS	SNP	Nonsense_Mutation	9	94985652	G	A	48	69
BRCA	TCGA-AO-A03P	AMY2B	SNP	Silent	1	104114362	T	C	52	52
BRCA	TCGA-AO-A03P	OBSCN	SNP	Missense_Mutation	1	228479785	G	T	42	52
BRCA	TCGA-AO-A03P	DDX21	SNP	Missense_Mutation	10	70737298	G	A	40	72
BRCA	TCGA-AO-A03P	GATA3	INS	Frame_Shift_Ins	10	8115978	-	T	8	77
BRCA	TCGA-AO-A03P	SLC6A5	SNP	Silent	11	20652303	C	T	23	35
BRCA	TCGA-AO-A03P	PRDM11	SNP	Silent	11	45245850	G	A	46	49
BRCA	TCGA-AO-A03P	TM7SF2	SNP	Silent	11	64883379	C	T	28	63
BRCA	TCGA-AO-A03P	ABCC9	SNP	Missense_Mutation	12	21958207	T	A	53	80
BRCA	TCGA-AO-A03P	ITGA7	SNP	Missense_Mutation	12	56091275	C	T	31	89
BRCA	TCGA-AO-A03P	CDK2	DEL	Frame_Shift_Del	12	56361872	G	-	47	59
BRCA	TCGA-AO-A03P	MDM1	SNP	Silent	12	68720671	G	A	43	47
BRCA	TCGA-AO-A03P	RAP2A	SNP	Nonsense_Mutation	13	98086995	C	T	21	79
BRCA	TCGA-AO-A03P	SPTB	SNP	Missense_Mutation	14	65252609	G	A	39	69
BRCA	TCGA-AO-A03P	MAX	SNP	Missense_Mutation	14	65568325	T	C	49	50
BRCA	TCGA-AO-A03P	RYR3	SNP	Silent	15	34130643	C	T	23	57
BRCA	TCGA-AO-A03P	HOMER2	SNP	Missense_Mutation	15	83523512	G	A	35	79
BRCA	TCGA-AO-A03P	MVP	SNP	Nonsense_Mutation	16	29848117	G	A	42	80
BRCA	TCGA-AO-A03P	KRT25	SNP	Missense_Mutation	17	38910684	G	T	33	60
BRCA	TCGA-AO-A03P	RAB5C	INS	Frame_Shift_Ins	17	40280782	-	T	48	100
BRCA	TCGA-AO-A03P	PPM1E	SNP	Missense_Mutation	17	57049625	C	G	18	100
BRCA	TCGA-AO-A03P	CCDC40	SNP	Silent	17	78022365	G	A	38	48
BRCA	TCGA-AO-A03P	CNTROB	SNP	Missense_Mutation	17	7840531	A	G	4	42
BRCA	TCGA-AO-A03P	SLC20A1	SNP	Missense_Mutation	2	113417065	A	C	4	60
BRCA	TCGA-AO-A03P	ARL5A	SNP	Missense_Mutation	2	152668924	T	C	55	54
BRCA	TCGA-AO-A03P	CAPN10	SNP	Missense_Mutation	2	241534504	G	C	42	86
BRCA	TCGA-AO-A03P	NLRC4	SNP	Missense_Mutation	2	32476071	G	A	40	49
BRCA	TCGA-AO-A03P	HCFC1	SNP	Missense_Mutation	23	153220767	G	T	40	92
BRCA	TCGA-AO-A03P	KIF4A	SNP	Missense_Mutation	23	69550016	G	C	41	79
BRCA	TCGA-AO-A03P	SRPRB	DEL	Frame_Shift_Del	3	133524840	ACGCTAGGTAAAAGGCGGCC	-	10	76
BRCA	TCGA-AO-A03P	QARS	SNP	Missense_Mutation	3	49140800	A	C	12	90
BRCA	TCGA-AO-A03P	ZNF717	SNP	Silent	3	75786521	G	T	43	30
BRCA	TCGA-AO-A03P	OR5K3	SNP	Silent	3	98110241	C	A	32	45
BRCA	TCGA-AO-A03P	LOC100287951	SNP	Silent	4	10413250	C	T	31	58
BRCA	TCGA-AO-A03P	PRSS12	SNP	Missense_Mutation	4	119203269	C	T	27	57
BRCA	TCGA-AO-A03P	MFSD8	SNP	Missense_Mutation	4	128842873	G	A	33	60
BRCA	TCGA-AO-A03P	SMAD1	SNP	Silent	4	146475147	C	T	32	51
BRCA	TCGA-AO-A03P	GALNTL6	SNP	Silent	4	173961206	T	A	61	63
BRCA	TCGA-AO-A03P	LETM1	DEL	In_Frame_Del	4	1821128	CTT	-	20	51
BRCA	TCGA-AO-A03P	PCDHA2	SNP	Missense_Mutation	5	140175999	G	A	38	55
BRCA	TCGA-AO-A03P	ERBB2IP	DEL	Frame_Shift_Del	5	65346627	AG	-	7	47
BRCA	TCGA-AO-A03P	UTRN	SNP	Splice_Site	6	144838085	G	T	44	91
BRCA	TCGA-AO-A03P	GPX5	SNP	Missense_Mutation	6	28501767	G	T	47	50
BRCA	TCGA-AO-A03P	TREM1	SNP	Missense_Mutation	6	41248835	G	A	41	41
BRCA	TCGA-AO-A03P	TDRD6	SNP	Missense_Mutation	6	46657105	T	A	54	52
BRCA	TCGA-AO-A03P	CDHR3	DEL	Frame_Shift_Del	7	105655584	C	-	30	44
BRCA	TCGA-AO-A03P	SEC61B	SNP	Silent	9	101992703	G	A	40	48
BRCA	TCGA-AO-A03P	PRRC2B	SNP	Missense_Mutation	9	134346218	C	A	23	74
BRCA	TCGA-AO-A03P	PRKACG	SNP	Silent	9	71628799	G	A	40	53
BRCA	TCGA-AO-A03P	ZCCHC6	SNP	Missense_Mutation	9	88937958	C	T	25	50
BRCA	TCGA-AO-A03P	IARS	SNP	Missense_Mutation	9	95007281	G	C	48	75
BRCA	TCGA-AO-A03P	ERCC6L2	SNP	Missense_Mutation	9	98774568	C	T	17	51
BRCA	TCGA-AO-A03R	CADM3	SNP	Silent	1	159170670	C	T	27	54
BRCA	TCGA-AO-A03R	KLHL20	SNP	Missense_Mutation	1	173703245	G	T	33	65
BRCA	TCGA-AO-A03R	CACNA1E	SNP	Missense_Mutation	1	181689373	T	C	54	90
BRCA	TCGA-AO-A03R	HMCN1	SNP	Missense_Mutation	1	185902884	G	T	46	80
BRCA	TCGA-AO-A03R	NUP133	SNP	Silent	1	229619833	C	T	20	45
BRCA	TCGA-AO-A03R	TMEM57	SNP	Missense_Mutation	1	25824793	A	G	1	87
BRCA	TCGA-AO-A03R	TPTE2	SNP	Missense_Mutation	13	20041461	A	G	13	47
BRCA	TCGA-AO-A03R	GPC5	SNP	Silent	13	92345580	G	A	39	34
BRCA	TCGA-AO-A03R	ZNF200	SNP	Missense_Mutation	16	3274067	C	T	17	96
BRCA	TCGA-AO-A03R	MEFV	SNP	Missense_Mutation	16	3299561	C	T	27	51
BRCA	TCGA-AO-A03R	AARS	SNP	Missense_Mutation	16	70293052	G	A	40	97
BRCA	TCGA-AO-A03R	RABEP1	SNP	Missense_Mutation	17	5238487	C	T	31	73
BRCA	TCGA-AO-A03R	TP53	SNP	Missense_Mutation	17	7577144	A	C	7	87
BRCA	TCGA-AO-A03R	OR10H5	SNP	Silent	19	15905356	C	T	31	52
BRCA	TCGA-AO-A03R	URI1	SNP	Missense_Mutation	19	30500053	A	T	2	56
BRCA	TCGA-AO-A03R	RYR1	SNP	Missense_Mutation	19	38946102	C	T	23	61
BRCA	TCGA-AO-A03R	PTCD3	SNP	Missense_Mutation	2	86344259	G	A	41	76
BRCA	TCGA-AO-A03R	SLC9A8	SNP	Silent	20	48431650	C	T	23	0
BRCA	TCGA-AO-A03R	FAM9B	SNP	Silent	23	8997417	G	A	41	46
BRCA	TCGA-AO-A03R	GPR128	SNP	Silent	3	100373700	A	C	13	44
BRCA	TCGA-AO-A03R	MUC4	SNP	Silent	3	195510990	C	T	19	40
BRCA	TCGA-AO-A03R	PET112	SNP	Missense_Mutation	4	152679994	T	G	63	64
BRCA	TCGA-AO-A03R	PCDHGA9	DEL	Frame_Shift_Del	5	140783298	G	-	47	38
BRCA	TCGA-AO-A03R	TTC23L	SNP	Missense_Mutation	5	34867065	T	A	52	65
BRCA	TCGA-AO-A03R	F2R	SNP	Missense_Mutation	5	76028303	C	A	30	50
BRCA	TCGA-AO-A03R	FAM102A	SNP	Missense_Mutation	9	130716172	C	A	31	70
BRCA	TCGA-AO-A03T	ATP5F1	SNP	Missense_Mutation	1	111999346	A	G	7	65
BRCA	TCGA-AO-A03T	CASQ2	SNP	Missense_Mutation	1	116280859	C	T	20	62
BRCA	TCGA-AO-A03T	NOTCH2	SNP	Missense_Mutation	1	120529653	C	A	18	59
BRCA	TCGA-AO-A03T	HIST2H2AC	SNP	Missense_Mutation	1	149858811	A	T	3	90
BRCA	TCGA-AO-A03T	JTB	DEL	Frame_Shift_Del	1	153948314	T	-	52	51
BRCA	TCGA-AO-A03T	C1orf116	SNP	Silent	1	207195327	C	T	32	90
BRCA	TCGA-AO-A03T	SELRC1	SNP	Missense_Mutation	1	53153417	C	G	18	49
BRCA	TCGA-AO-A03T	CACHD1	SNP	Missense_Mutation	1	65129390	T	G	50	93
BRCA	TCGA-AO-A03T	ZNF438	SNP	Missense_Mutation	10	31134261	C	G	29	67
BRCA	TCGA-AO-A03T	ZNF485	SNP	Missense_Mutation	10	44111988	C	A	26	51
BRCA	TCGA-AO-A03T	KAT6B	SNP	Missense_Mutation	10	76603139	A	G	4	77
BRCA	TCGA-AO-A03T	NCAM1	SNP	Missense_Mutation	11	113105772	G	A	40	60
BRCA	TCGA-AO-A03T	TECTA	SNP	Missense_Mutation	11	121060518	C	A	19	84
BRCA	TCGA-AO-A03T	OR6T1	SNP	Missense_Mutation	11	123814154	C	A	27	50
BRCA	TCGA-AO-A03T	ENSG00000197041	SNP	Silent	12	104424589	C	T	19	50
BRCA	TCGA-AO-A03T	GCN1L1	SNP	Missense_Mutation	12	120591094	G	C	46	100
BRCA	TCGA-AO-A03T	LRP6	SNP	Missense_Mutation	12	12397385	T	A	55	64
BRCA	TCGA-AO-A03T	ERCC5	SNP	Missense_Mutation	13	103514800	T	C	59	46
BRCA	TCGA-AO-A03T	CHURC1-FNTB	SNP	Splice_site	14	65381251	G	A	39	68
BRCA	TCGA-AO-A03T	YLPM1	SNP	Missense_Mutation	14	75247126	G	C	33	80
BRCA	TCGA-AO-A03T	LPCAT4	SNP	Nonstop_Mutation	15	34651330	A	G	7	63
BRCA	TCGA-AO-A03T	SHC4	DEL	In_Frame_Del	15	49148280	TCT	-	50	59
BRCA	TCGA-AO-A03T	KLHL25	SNP	Silent	15	86311929	C	T	23	41
BRCA	TCGA-AO-A03T	MCTP2	SNP	Silent	15	94910918	T	A	61	40
BRCA	TCGA-AO-A03T	SRCAP	SNP	Missense_Mutation	16	30722922	A	T	7	61
BRCA	TCGA-AO-A03T	TRIM72	SNP	Missense_Mutation	16	31230728	G	A	43	66
BRCA	TCGA-AO-A03T	C16orf96	SNP	Missense_Mutation	16	4624728	G	T	41	52
BRCA	TCGA-AO-A03T	MLYCD	SNP	Missense_Mutation	16	83940597	G	A	45	70
BRCA	TCGA-AO-A03T	MAP2K4	INS	Splice_site	17	12011108	-	T	44	85
BRCA	TCGA-AO-A03T	SUPT6H	SNP	Missense_Mutation	17	27001581	G	A	45	99
BRCA	TCGA-AO-A03T	MYCBPAP	SNP	Missense_Mutation	17	48595031	G	C	33	62
BRCA	TCGA-AO-A03T	ABCA10	SNP	Missense_Mutation	17	67212118	A	T	6	43
BRCA	TCGA-AO-A03T	BAHCC1	SNP	Missense_Mutation	17	79414665	C	T	27	52
BRCA	TCGA-AO-A03T	MBD1	SNP	Missense_Mutation	18	47800615	C	T	23	94
BRCA	TCGA-AO-A03T	COMP	SNP	Silent	19	18902064	G	C	39	54
BRCA	TCGA-AO-A03T	LMTK3	SNP	Missense_Mutation	19	49004805	C	T	27	89
BRCA	TCGA-AO-A03T	HAS1	SNP	Missense_Mutation	19	52217239	C	G	21	88
BRCA	TCGA-AO-A03T	MUC16	SNP	Missense_Mutation	19	9056288	G	C	42	51
BRCA	TCGA-AO-A03T	SEPT10	SNP	Missense_Mutation	2	110343411	C	A	32	49
BRCA	TCGA-AO-A03T	GLI2	SNP	Missense_Mutation	2	121743981	C	T	19	69
BRCA	TCGA-AO-A03T	TTN	SNP	Missense_Mutation	2	179471808	T	C	62	91
BRCA	TCGA-AO-A03T	TTN	DEL	Frame_Shift_Del	2	179605674	G	-	46	65
BRCA	TCGA-AO-A03T	AOX1	SNP	Silent	2	201523930	C	T	24	57
BRCA	TCGA-AO-A03T	USP37	SNP	Missense_Mutation	2	219410972	C	G	32	76
BRCA	TCGA-AO-A03T	PREPL	SNP	Missense_Mutation	2	44549012	T	A	50	78
BRCA	TCGA-AO-A03T	RTN4	SNP	Missense_Mutation	2	55209715	A	C	6	93
BRCA	TCGA-AO-A03T	PAPOLG	SNP	Missense_Mutation	2	61021858	A	T	9	80
BRCA	TCGA-AO-A03T	C20orf26	SNP	Splice_site	20	20054946	C	A	26	81
BRCA	TCGA-AO-A03T	CDH26	SNP	Silent	20	58564054	G	T	38	46
BRCA	TCGA-AO-A03T	GAL3ST1	SNP	Missense_Mutation	22	30951010	A	G	7	92
BRCA	TCGA-AO-A03T	ARMCX2	DEL	Frame_Shift_Del	23	100910935	CTGAGAAGTTT	-	20	69
BRCA	TCGA-AO-A03T	GPR112	SNP	Silent	23	135428727	C	T	21	63
BRCA	TCGA-AO-A03T	FLNA	SNP	Missense_Mutation	23	153593247	G	T	37	43
BRCA	TCGA-AO-A03T	CLIC2	SNP	Splice_site	23	154528458	C	T	26	92
BRCA	TCGA-AO-A03T	SFRS17A	SNP	Missense_Mutation	23	1720158	C	T	23	47
BRCA	TCGA-AO-A03T	ATRX	SNP	Silent	23	76937079	T	C	60	50
BRCA	TCGA-AO-A03T	PCDH19	DEL	Frame_Shift_Del	23	99661504	AGATCAT	-	3	77
BRCA	TCGA-AO-A03T	SETD2	SNP	Missense_Mutation	3	47164390	T	C	52	50
BRCA	TCGA-AO-A03T	PITX2	SNP	Missense_Mutation	4	111539646	A	C	3	90
BRCA	TCGA-AO-A03T	NKX3-2	SNP	Silent	4	13543811	G	A	35	82
BRCA	TCGA-AO-A03T	TRIML1	SNP	Silent	4	189068235	T	A	55	23
BRCA	TCGA-AO-A03T	DHX15	SNP	Nonsense_Mutation	4	24529618	G	A	48	99
BRCA	TCGA-AO-A03T	SLC4A4	SNP	Silent	4	72316953	G	C	38	43
BRCA	TCGA-AO-A03T	GFPT2	SNP	Missense_Mutation	5	179739534	C	T	20	100
BRCA	TCGA-AO-A03T	TARS	SNP	Missense_Mutation	5	33461087	A	C	11	94
BRCA	TCGA-AO-A03T	C7	SNP	Missense_Mutation	5	40934436	C	T	27	54
BRCA	TCGA-AO-A03T	ENPP1	SNP	Missense_Mutation	6	132207728	A	C	9	82
BRCA	TCGA-AO-A03T	DST	DEL	Frame_Shift_Del	6	56473071	TGACTTGAGAACTTTC	-	51	53
BRCA	TCGA-AO-A03T	MDN1	SNP	Missense_Mutation	6	90388354	C	T	28	98
BRCA	TCGA-AO-A03T	FBXO24	SNP	Missense_Mutation	7	100189458	C	T	30	65
BRCA	TCGA-AO-A03T	DLD	SNP	Missense_Mutation	7	107533688	C	T	32	62
BRCA	TCGA-AO-A03T	CALD1	SNP	Silent	7	134618765	G	A	41	51
BRCA	TCGA-AO-A03T	KCNH2	SNP	Missense_Mutation	7	150647101	G	T	38	47
BRCA	TCGA-AO-A03T	URGCP	SNP	Missense_Mutation	7	43917712	G	T	48	47
BRCA	TCGA-AO-A03T	PMS2	SNP	Missense_Mutation	7	6038878	T	G	51	90
BRCA	TCGA-AO-A03T	CLDN12	SNP	Missense_Mutation	7	90042574	G	C	47	97
BRCA	TCGA-AO-A03T	AKAP9	SNP	Silent	7	91630767	C	G	29	53
BRCA	TCGA-AO-A03T	CYP3A7	SNP	Silent	7	99306819	G	C	45	50
BRCA	TCGA-AO-A03T	PVRIG	SNP	Missense_Mutation	7	99818791	C	A	26	57
BRCA	TCGA-AO-A03T	VPS37A	SNP	Nonsense_Mutation	8	17137583	G	T	33	97
BRCA	TCGA-AO-A03T	CSMD1	SNP	Missense_Mutation	8	2818711	G	T	44	55
BRCA	TCGA-AO-A03T	EYA1	SNP	Missense_Mutation	8	72211888	A	G	13	70
BRCA	TCGA-AO-A03T	CNTLN	SNP	Missense_Mutation	9	17235755	G	C	41	65
BRCA	TCGA-AO-A03T	C9orf123	SNP	Silent	9	7799564	C	A	26	51
BRCA	TCGA-AO-A03T	VPS13A	SNP	Missense_Mutation	9	80020881	G	A	33	97
BRCA	TCGA-AO-A03U	LOC100288406	SNP	Missense_Mutation	12	92260	G	C	33	65
BRCA	TCGA-AO-A03U	ENSG00000206192	SNP	Silent	13	19317503	T	C	60	51
BRCA	TCGA-AO-A03U	RPS27L	INS	In_Frame_Ins	15	63448632	-	TAC	1	90
BRCA	TCGA-AO-A03U	PIGQ	SNP	Silent	16	624101	G	A	40	42
BRCA	TCGA-AO-A03U	AP3D1	DEL	Frame_Shift_Del	19	2114127	C	-	32	59
BRCA	TCGA-AO-A03U	C2orf16	SNP	Missense_Mutation	2	27803312	G	C	33	54
BRCA	TCGA-AO-A03U	PJA2	SNP	Missense_Mutation	5	108698676	T	C	52	55
BRCA	TCGA-AO-A03U	GPR98	DEL	Frame_Shift_Del	5	89990148	TA	-	53	47
BRCA	TCGA-AO-A03U	TG	SNP	Silent	8	133899093	A	G	11	49
BRCA	TCGA-AO-A03U	C9orf86	SNP	Silent	9	139731969	C	T	23	53
BRCA	TCGA-AO-A03V	FBXO2	SNP	Missense_Mutation	1	11708857	G	C	39	83
BRCA	TCGA-AO-A03V	AURKAIP1	SNP	Splice_Site	1	1309283	C	T	32	86
BRCA	TCGA-AO-A03V	TARS2	SNP	Missense_Mutation	1	150476814	G	C	45	97
BRCA	TCGA-AO-A03V	HEATR1	SNP	Nonsense_Mutation	1	236738059	C	A	29	66
BRCA	TCGA-AO-A03V	HIVEP3	SNP	Missense_Mutation	1	42047320	G	A	33	98
BRCA	TCGA-AO-A03V	TGFBR3	SNP	Missense_Mutation	1	92161237	G	T	33	97
BRCA	TCGA-AO-A03V	KIAA1462	SNP	Missense_Mutation	10	30317146	C	T	32	55
BRCA	TCGA-AO-A03V	CYP2C8	SNP	Missense_Mutation	10	96802742	C	A	20	40
BRCA	TCGA-AO-A03V	OR4C16	SNP	Missense_Mutation	11	55339821	C	A	20	78
BRCA	TCGA-AO-A03V	MAP3K11	SNP	Splice_site	11	65365763	C	G	29	58
BRCA	TCGA-AO-A03V	PDE3A	SNP	Missense_Mutation	12	20803395	G	A	41	98
BRCA	TCGA-AO-A03V	PPFIA2	SNP	Missense_Mutation	12	81678036	G	A	46	97
BRCA	TCGA-AO-A03V	PPFIA2	SNP	Missense_Mutation	12	82147913	G	T	47	87
BRCA	TCGA-AO-A03V	THSD1	SNP	Silent	13	52971733	G	A	34	56
BRCA	TCGA-AO-A03V	RYR3	SNP	Missense_Mutation	15	34023837	C	T	19	100
BRCA	TCGA-AO-A03V	ADAMTSL3	SNP	Missense_Mutation	15	84373178	C	T	22	90
BRCA	TCGA-AO-A03V	SSH2	SNP	Missense_Mutation	17	27959760	C	G	29	90
BRCA	TCGA-AO-A03V	TBKBP1	SNP	Missense_Mutation	17	45773639	G	A	39	95
BRCA	TCGA-AO-A03V	CD300A	SNP	Missense_Mutation	17	72470679	T	A	58	46
BRCA	TCGA-AO-A03V	SERPINB12	SNP	Missense_Mutation	18	61233851	A	T	1	41
BRCA	TCGA-AO-A03V	ANKRD12	SNP	Missense_Mutation	18	9211612	C	T	19	99
BRCA	TCGA-AO-A03V	C19orf12	SNP	Missense_Mutation	19	30199322	G	A	40	27
BRCA	TCGA-AO-A03V	ZNF583	SNP	Missense_Mutation	19	56925731	C	T	26	74
BRCA	TCGA-AO-A03V	TTN	SNP	Missense_Mutation	2	179498336	C	G	29	38
BRCA	TCGA-AO-A03V	PUM2	SNP	Silent	2	20455818	G	A	45	72
BRCA	TCGA-AO-A03V	INPP5D	SNP	Missense_Mutation	2	233986963	C	A	17	46
BRCA	TCGA-AO-A03V	KDM3A	SNP	Missense_Mutation	2	86707459	G	A	34	68
BRCA	TCGA-AO-A03V	CABIN1	SNP	Missense_Mutation	22	24468359	C	T	29	92
BRCA	TCGA-AO-A03V	SGSM1	SNP	Missense_Mutation	22	25294156	C	T	19	51
BRCA	TCGA-AO-A03V	POLR2F	SNP	Missense_Mutation	22	38355468	G	A	37	94
BRCA	TCGA-AO-A03V	ASMTL	SNP	Missense_Mutation	23	1522340	T	G	56	40
BRCA	TCGA-AO-A03V	GPR64	SNP	Missense_Mutation	23	19021075	C	G	18	98
BRCA	TCGA-AO-A03V	ARAF	SNP	Missense_Mutation	23	47430771	G	A	39	80
BRCA	TCGA-AO-A03V	LRRC34	SNP	Silent	3	169524690	G	T	45	49
BRCA	TCGA-AO-A03V	UBA7	SNP	Missense_Mutation	3	49847551	T	G	59	74
BRCA	TCGA-AO-A03V	PDZRN3	SNP	Missense_Mutation	3	73432884	C	T	30	99
BRCA	TCGA-AO-A03V	KIAA1109	SNP	Missense_Mutation	4	123109213	G	T	36	100
BRCA	TCGA-AO-A03V	MOB1B	SNP	Missense_Mutation	4	71840935	A	G	16	94
BRCA	TCGA-AO-A03V	PCDHB11	SNP	Missense_Mutation	5	140581431	C	A	26	68
BRCA	TCGA-AO-A03V	CDH12	SNP	Missense_Mutation	5	21817115	C	T	30	94
BRCA	TCGA-AO-A03V	C9	DEL	Frame_Shift_Del	5	39288989	A	-	5	82
BRCA	TCGA-AO-A03V	GHR	SNP	Nonsense_Mutation	5	42695133	C	G	29	54
BRCA	TCGA-AO-A03V	FBXO30	SNP	Missense_Mutation	6	146127358	T	G	64	93
BRCA	TCGA-AO-A03V	IGF2R	SNP	Silent	6	160496980	C	T	29	52
BRCA	TCGA-AO-A03V	HIST1H2BF	SNP	Silent	6	26199999	C	T	31	60
BRCA	TCGA-AO-A03V	FOXP2	SNP	Missense_Mutation	7	114066679	G	A	44	97
BRCA	TCGA-AO-A03V	AP4M1	SNP	Missense_Mutation	7	99701247	A	G	10	83
BRCA	TCGA-AO-A03V	DLC1	SNP	Missense_Mutation	8	12947852	C	A	17	79
BRCA	TCGA-AO-A03V	KIAA1429	SNP	Missense_Mutation	8	95541412	C	T	30	88
BRCA	TCGA-AO-A03V	KIAA0368	SNP	Silent	9	114176803	C	A	26	60
BRCA	TCGA-AO-A03V	MPDZ	SNP	Silent	9	13192136	T	C	55	51
BRCA	TCGA-AO-A0J2	DCST1	SNP	Missense_Mutation	1	155006974	C	T	23	64
BRCA	TCGA-AO-A0J2	ATP1A4	SNP	Missense_Mutation	1	160121911	G	C	33	47
BRCA	TCGA-AO-A0J2	CFH	SNP	Silent	1	196683022	A	T	12	47
BRCA	TCGA-AO-A0J2	IARS2	SNP	Missense_Mutation	1	220316439	C	A	20	80
BRCA	TCGA-AO-A0J2	IL28RA	DEL	Frame_Shift_Del	1	24488039	C	-	30	44
BRCA	TCGA-AO-A0J2	SORCS1	SNP	Missense_Mutation	10	108367018	A	T	6	87
BRCA	TCGA-AO-A0J2	PHYH	SNP	Silent	10	13325816	G	A	40	50
BRCA	TCGA-AO-A0J2	OR6T1	SNP	Silent	11	123814411	A	T	13	41
BRCA	TCGA-AO-A0J2	FAR1	INS	Frame_Shift_Ins	11	13721879	-	AAATC	11	80
BRCA	TCGA-AO-A0J2	FAR1	INS	In_Frame_Ins	11	13721883	-	TTT	12	79
BRCA	TCGA-AO-A0J2	MPEG1	SNP	Silent	11	58978653	G	A	42	54
BRCA	TCGA-AO-A0J2	SLC22A10	DEL	In_Frame_Del	11	63057707	ATTCTTCCCTCTCTCATGTTATTA	-	16	13
BRCA	TCGA-AO-A0J2	NAV3	SNP	Silent	12	78594278	C	A	21	41
BRCA	TCGA-AO-A0J2	ADAMTS17	SNP	Missense_Mutation	15	100801723	T	C	58	85
BRCA	TCGA-AO-A0J2	HERC2	DEL	Frame_Shift_Del	15	28360572	TACCTCACTGAGGTCCGCGA	-	61	53
BRCA	TCGA-AO-A0J2	CEMP1	SNP	Silent	16	2580811	A	C	7	46
BRCA	TCGA-AO-A0J2	ITGAX	SNP	Splice_site	16	31382656	A	G	10	61
BRCA	TCGA-AO-A0J2	ENSG00000226760	SNP	Missense_Mutation	16	32489447	G	A	47	64
BRCA	TCGA-AO-A0J2	C17orf97	SNP	Silent	17	263747	C	T	23	39
BRCA	TCGA-AO-A0J2	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-AO-A0J2	LPIN2	SNP	Silent	18	2937724	C	G	23	53
BRCA	TCGA-AO-A0J2	ZFP161	SNP	Silent	18	5291511	C	T	18	51
BRCA	TCGA-AO-A0J2	AKAP8L	SNP	Missense_Mutation	19	15514361	T	A	60	80
BRCA	TCGA-AO-A0J2	WIZ	SNP	Missense_Mutation	19	15547847	C	T	23	89
BRCA	TCGA-AO-A0J2	NWD1	SNP	Silent	19	16870120	G	A	38	24
BRCA	TCGA-AO-A0J2	ATP4A	SNP	Missense_Mutation	19	36054333	C	T	21	67
BRCA	TCGA-AO-A0J2	HAUS5	DEL	Frame_Shift_Del	19	36103737	CGGTCGAAGAGATGGGGGTGCCCGTGGCGGCC	-	27	62
BRCA	TCGA-AO-A0J2	DYRK1B	SNP	Missense_Mutation	19	40319129	G	C	36	70
BRCA	TCGA-AO-A0J2	SLC4A10	SNP	Missense_Mutation	2	162804110	G	C	39	64
BRCA	TCGA-AO-A0J2	COBLL1	SNP	Silent	2	165551133	A	T	11	50
BRCA	TCGA-AO-A0J2	ABCB11	SNP	Nonsense_Mutation	2	169870851	T	A	62	80
BRCA	TCGA-AO-A0J2	COL5A2	SNP	Splice_Site	2	189943788	C	G	18	83
BRCA	TCGA-AO-A0J2	WDR35	SNP	Nonsense_Mutation	2	20131080	C	A	29	75
BRCA	TCGA-AO-A0J2	TGM3	SNP	Missense_Mutation	20	2298032	C	A	18	96
BRCA	TCGA-AO-A0J2	PLCB1	SNP	Missense_Mutation	20	8637898	C	A	24	84
BRCA	TCGA-AO-A0J2	DNAJC28	SNP	Missense_Mutation	21	34860854	T	C	62	56
BRCA	TCGA-AO-A0J2	AGPAT3	SNP	Missense_Mutation	21	45400990	C	A	24	98
BRCA	TCGA-AO-A0J2	AIFM3	SNP	Missense_Mutation	22	21334332	C	T	26	90
BRCA	TCGA-AO-A0J2	UPB1	DEL	Frame_Shift_Del	22	24916420	TCAATCGAGTGGGCACCGTAAG	-	50	90
BRCA	TCGA-AO-A0J2	GTSE1	DEL	Frame_Shift_Del	22	46704300	G	-	39	16
BRCA	TCGA-AO-A0J2	TIMM8A	DEL	In_Frame_Del	23	100603538	TCTGGTGCACCAGCTGCTGGAAGCGCTGCT	-	50	67
BRCA	TCGA-AO-A0J2	SPANXN4	SNP	Missense_Mutation	23	142121829	A	G	7	47
BRCA	TCGA-AO-A0J2	ZPLD1	SNP	Missense_Mutation	3	102183084	T	A	50	47
BRCA	TCGA-AO-A0J2	PLA1A	SNP	Silent	3	119336879	G	C	45	61
BRCA	TCGA-AO-A0J2	ITPR1	SNP	Silent	3	4699915	C	T	31	57
BRCA	TCGA-AO-A0J2	OR5H6	SNP	Missense_Mutation	3	97984086	A	G	4	49
BRCA	TCGA-AO-A0J2	POLN	SNP	Missense_Mutation	4	2087377	G	C	36	72
BRCA	TCGA-AO-A0J2	CAMK2A	SNP	Silent	5	149618306	G	T	35	48
BRCA	TCGA-AO-A0J2	CDH9	SNP	Splice_site	5	26890538	T	C	61	49
BRCA	TCGA-AO-A0J2	WASF1	SNP	Missense_Mutation	6	110422929	C	T	25	74
BRCA	TCGA-AO-A0J2	GPRC6A	SNP	Silent	6	117128090	G	T	37	61
BRCA	TCGA-AO-A0J2	LAMA2	SNP	Silent	6	129468133	T	A	63	42
BRCA	TCGA-AO-A0J2	IL22RA2	SNP	Missense_Mutation	6	137466808	C	A	32	59
BRCA	TCGA-AO-A0J2	ARID1B	SNP	Missense_Mutation	6	157488246	C	G	17	73
BRCA	TCGA-AO-A0J2	ZBTB9	SNP	Silent	6	33423207	G	A	46	54
BRCA	TCGA-AO-A0J2	KCNK17	SNP	Silent	6	39268235	C	T	31	50
BRCA	TCGA-AO-A0J2	SLC4A2	SNP	Missense_Mutation	7	150767276	G	C	36	82
BRCA	TCGA-AO-A0J2	ITGB8	SNP	Missense_Mutation	7	20431066	A	G	10	84
BRCA	TCGA-AO-A0J2	CDCA7L	SNP	Missense_Mutation	7	21942714	A	T	7	93
BRCA	TCGA-AO-A0J2	PKHD1L1	SNP	Silent	8	110503326	G	A	43	50
BRCA	TCGA-AO-A0J2	CYP11B1	SNP	Missense_Mutation	8	143961043	C	G	30	51
BRCA	TCGA-AO-A0J2	PTGS1	SNP	Missense_Mutation	9	125148912	G	C	35	44
BRCA	TCGA-AO-A0J2	ASB6	SNP	Missense_Mutation	9	132404204	C	A	21	61
BRCA	TCGA-AO-A0J2	FAM154A	SNP	Silent	9	18950827	G	C	47	55
BRCA	TCGA-AO-A0J2	ACO1	SNP	Silent	9	32431799	T	C	51	47
BRCA	TCGA-AO-A0J2	FAM75A1	SNP	Missense_Mutation	9	39361273	T	C	64	42
BRCA	TCGA-AO-A0J2	FAM75A2	SNP	Missense_Mutation	9	39890524	T	C	64	36
BRCA	TCGA-AO-A0J2	SMC5	SNP	Missense_Mutation	9	72959102	C	G	25	71
BRCA	TCGA-AO-A0J2	FAM75C1	SNP	Missense_Mutation	9	90535856	C	A	30	54
BRCA	TCGA-AO-A0J3	GPSM2	SNP	Missense_Mutation	1	109465061	G	C	41	77
BRCA	TCGA-AO-A0J3	LRIG2	SNP	Missense_Mutation	1	113662083	C	T	26	64
BRCA	TCGA-AO-A0J3	SPTA1	SNP	Missense_Mutation	1	158583632	G	T	38	72
BRCA	TCGA-AO-A0J3	OR6N1	SNP	Silent	1	158735726	G	A	45	56
BRCA	TCGA-AO-A0J3	PYHIN1	SNP	Missense_Mutation	1	158912052	G	T	48	66
BRCA	TCGA-AO-A0J3	DDI2	SNP	Missense_Mutation	1	15978378	G	T	34	79
BRCA	TCGA-AO-A0J3	KIF21B	SNP	Silent	1	200959737	G	C	45	57
BRCA	TCGA-AO-A0J3	KIF21B	SNP	Silent	1	200960092	G	A	33	58
BRCA	TCGA-AO-A0J3	CR1	SNP	Missense_Mutation	1	207785317	C	T	24	51
BRCA	TCGA-AO-A0J3	SUFU	SNP	Missense_Mutation	10	104356987	G	A	37	99
BRCA	TCGA-AO-A0J3	FRMD4A	SNP	Missense_Mutation	10	13708296	C	A	20	55
BRCA	TCGA-AO-A0J3	MYO3A	SNP	Missense_Mutation	10	26463134	C	A	25	51
BRCA	TCGA-AO-A0J3	KIAA1462	SNP	Missense_Mutation	10	30318049	G	A	39	96
BRCA	TCGA-AO-A0J3	NRP1	SNP	Missense_Mutation	10	33543059	G	A	34	63
BRCA	TCGA-AO-A0J3	GATA3	DEL	Frame_Shift_Del	10	8115942	TT	-	56	88
BRCA	TCGA-AO-A0J3	SBF2	SNP	Missense_Mutation	11	10015496	C	T	31	86
BRCA	TCGA-AO-A0J3	ARHGAP20	SNP	Missense_Mutation	11	110451528	C	A	28	60
BRCA	TCGA-AO-A0J3	NXPE1	SNP	Missense_Mutation	11	114400922	C	A	32	46
BRCA	TCGA-AO-A0J3	NCAPD3	SNP	Splice_site	11	134062803	G	A	34	97
BRCA	TCGA-AO-A0J3	MMP26	SNP	Missense_Mutation	11	5010971	G	T	47	65
BRCA	TCGA-AO-A0J3	TRIM34	SNP	Missense_Mutation	11	5624497	C	G	32	58
BRCA	TCGA-AO-A0J3	SLCO2B1	SNP	Missense_Mutation	11	74880325	C	A	32	50
BRCA	TCGA-AO-A0J3	TUB	SNP	Missense_Mutation	11	8060462	C	A	32	52
BRCA	TCGA-AO-A0J3	CLIP1	SNP	Silent	12	122845563	G	A	45	65
BRCA	TCGA-AO-A0J3	GRIN2B	SNP	Nonsense_Mutation	12	13716856	C	A	31	98
BRCA	TCGA-AO-A0J3	SPATA13	SNP	Missense_Mutation	13	24858359	G	T	42	70
BRCA	TCGA-AO-A0J3	EAPP	SNP	Silent	14	35002708	C	T	31	41
BRCA	TCGA-AO-A0J3	NID2	SNP	Nonsense_Mutation	14	52485862	C	T	21	98
BRCA	TCGA-AO-A0J3	ADAMTS17	SNP	Nonsense_Mutation	15	100537592	G	A	48	55
BRCA	TCGA-AO-A0J3	MKRN3	SNP	Missense_Mutation	15	23812230	G	C	44	53
BRCA	TCGA-AO-A0J3	MAGEL2	DEL	Frame_Shift_Del	15	23889881	G	-	47	48
BRCA	TCGA-AO-A0J3	RNF111	DEL	Frame_Shift_Del	15	59368377	CTCT	-	24	48
BRCA	TCGA-AO-A0J3	LACTB	SNP	Missense_Mutation	15	63433916	T	C	60	91
BRCA	TCGA-AO-A0J3	POLG	SNP	Missense_Mutation	15	89870240	C	A	28	57
BRCA	TCGA-AO-A0J3	ALKBH5	SNP	Missense_Mutation	17	18110148	C	T	23	86
BRCA	TCGA-AO-A0J3	PGAP3	SNP	Missense_Mutation	17	37842260	C	T	23	45
BRCA	TCGA-AO-A0J3	ZNF536	SNP	Splice_site	19	31048070	G	A	45	66
BRCA	TCGA-AO-A0J3	SPTBN4	SNP	Silent	19	41008789	G	A	35	60
BRCA	TCGA-AO-A0J3	ZFP28	SNP	Silent	19	57066677	A	G	8	50
BRCA	TCGA-AO-A0J3	TRIM28	SNP	Missense_Mutation	19	59059870	C	T	27	64
BRCA	TCGA-AO-A0J3	IL1R1	SNP	Missense_Mutation	2	102781403	C	G	17	51
BRCA	TCGA-AO-A0J3	TTN	SNP	Missense_Mutation	2	179403912	G	A	41	88
BRCA	TCGA-AO-A0J3	TTN	SNP	Nonsense_Mutation	2	179444429	G	A	40	63
BRCA	TCGA-AO-A0J3	MLPH	SNP	Missense_Mutation	2	238436082	G	A	45	73
BRCA	TCGA-AO-A0J3	EGR4	SNP	Silent	2	73519008	C	T	27	52
BRCA	TCGA-AO-A0J3	RPIA	SNP	Silent	2	89034083	C	T	31	49
BRCA	TCGA-AO-A0J3	PKIG	SNP	Missense_Mutation	20	43243339	G	A	37	63
BRCA	TCGA-AO-A0J3	H2BFWT	SNP	Missense_Mutation	23	103268001	C	T	23	17
BRCA	TCGA-AO-A0J3	C1GALT1C1	SNP	Missense_Mutation	23	119760251	C	A	24	52
BRCA	TCGA-AO-A0J3	AFF2	SNP	Missense_Mutation	23	148037437	T	C	59	50
BRCA	TCGA-AO-A0J3	SRPX	SNP	Splice_Site	23	38016148	C	G	18	83
BRCA	TCGA-AO-A0J3	POU3F4	SNP	Missense_Mutation	23	82763876	G	T	41	81
BRCA	TCGA-AO-A0J3	ZBBX	SNP	Silent	3	167083758	G	A	38	56
BRCA	TCGA-AO-A0J3	CELSR3	DEL	Frame_Shift_Del	3	48687978	C	-	18	81
BRCA	TCGA-AO-A0J3	SYNPO2	SNP	Silent	4	119944647	C	T	29	81
BRCA	TCGA-AO-A0J3	UCP1	SNP	Missense_Mutation	4	141484633	G	A	40	53
BRCA	TCGA-AO-A0J3	DDX60L	SNP	Missense_Mutation	4	169344916	G	A	37	62
BRCA	TCGA-AO-A0J3	FAT1	SNP	Silent	4	187627796	G	A	40	62
BRCA	TCGA-AO-A0J3	NOA1	SNP	Missense_Mutation	4	57842745	C	T	27	71
BRCA	TCGA-AO-A0J3	SH3TC1	SNP	Missense_Mutation	4	8224596	A	C	9	63
BRCA	TCGA-AO-A0J3	PCDHA1	SNP	Silent	5	140166325	G	A	38	26
BRCA	TCGA-AO-A0J3	SLC25A2	SNP	Missense_Mutation	5	140683389	G	A	38	63
BRCA	TCGA-AO-A0J3	GABRA6	SNP	Missense_Mutation	5	161119043	C	A	28	100
BRCA	TCGA-AO-A0J3	RGS14	SNP	Silent	5	176793928	C	T	24	66
BRCA	TCGA-AO-A0J3	C5orf42	DEL	In_Frame_Del	5	37170358	GTT	-	36	55
BRCA	TCGA-AO-A0J3	KIAA0825	SNP	Silent	5	93856500	G	A	33	48
BRCA	TCGA-AO-A0J3	TTC37	SNP	Missense_Mutation	5	94861323	G	A	37	64
BRCA	TCGA-AO-A0J3	UTRN	SNP	Missense_Mutation	6	145095471	A	C	1	93
BRCA	TCGA-AO-A0J3	C6orf118	SNP	Nonsense_Mutation	6	165715773	C	T	21	61
BRCA	TCGA-AO-A0J3	TNXB	SNP	Missense_Mutation	6	32064509	G	C	39	70
BRCA	TCGA-AO-A0J3	DEFB113	SNP	Missense_Mutation	6	49936562	C	G	32	43
BRCA	TCGA-AO-A0J3	MUC12	SNP	Missense_Mutation	7	100647960	G	T	35	61
BRCA	TCGA-AO-A0J3	CREB5	SNP	Silent	7	28547244	G	A	37	38
BRCA	TCGA-AO-A0J3	FAM20C	DEL	Frame_Shift_Del	7	296993	C	-	19	50
BRCA	TCGA-AO-A0J3	UPK3B	SNP	Silent	7	76141173	G	A	38	44
BRCA	TCGA-AO-A0J3	CA1	SNP	Silent	8	86241930	G	A	45	54
BRCA	TCGA-AO-A0J3	ODF2	SNP	Missense_Mutation	9	131247750	A	T	4	62
BRCA	TCGA-AO-A0J3	LCN10	SNP	Splice_site	9	139634403	G	C	40	44
BRCA	TCGA-AO-A0J3	CNTLN	SNP	Missense_Mutation	9	17226215	C	T	32	92
BRCA	TCGA-AO-A0J3	LOC100288436	SNP	Missense_Mutation	9	30559345	C	T	29	51
BRCA	TCGA-AO-A0J4	OLFML3	SNP	Missense_Mutation	1	114523022	G	C	33	63
BRCA	TCGA-AO-A0J4	AMPD1	SNP	Missense_Mutation	1	115216584	T	A	56	59
BRCA	TCGA-AO-A0J4	TBX15	SNP	Missense_Mutation	1	119428004	C	T	31	81
BRCA	TCGA-AO-A0J4	TTC24	SNP	Missense_Mutation	1	156555562	C	T	19	45
BRCA	TCGA-AO-A0J4	ARHGAP30	SNP	Missense_Mutation	1	161018344	G	A	43	38
BRCA	TCGA-AO-A0J4	STX6	SNP	Silent	1	180957443	G	A	33	74
BRCA	TCGA-AO-A0J4	USH2A	SNP	Missense_Mutation	1	215848874	G	T	33	47
BRCA	TCGA-AO-A0J4	OR2T3	SNP	Missense_Mutation	1	248636865	G	A	38	52
BRCA	TCGA-AO-A0J4	ZMYM4	SNP	Missense_Mutation	1	35851767	T	G	53	91
BRCA	TCGA-AO-A0J4	INPP5B	SNP	Missense_Mutation	1	38397539	C	A	23	28
BRCA	TCGA-AO-A0J4	C1orf210	SNP	Missense_Mutation	1	43748740	C	G	17	38
BRCA	TCGA-AO-A0J4	PODN	SNP	Missense_Mutation	1	53535536	G	C	33	54
BRCA	TCGA-AO-A0J4	GBF1	SNP	Missense_Mutation	10	104140919	C	G	32	52
BRCA	TCGA-AO-A0J4	RGR	SNP	Silent	10	86014115	C	T	32	50
BRCA	TCGA-AO-A0J4	LAYN	SNP	Missense_Mutation	11	111414758	G	A	41	72
BRCA	TCGA-AO-A0J4	MICAL2	SNP	Silent	11	12225820	C	G	24	44
BRCA	TCGA-AO-A0J4	OR6X1	SNP	Missense_Mutation	11	123624318	C	G	29	52
BRCA	TCGA-AO-A0J4	P2RY2	SNP	Missense_Mutation	11	72946208	G	A	35	51
BRCA	TCGA-AO-A0J4	FAT3	SNP	Missense_Mutation	11	92534655	G	T	35	89
BRCA	TCGA-AO-A0J4	GYS2	SNP	Missense_Mutation	12	21716262	C	T	23	100
BRCA	TCGA-AO-A0J4	VWF	SNP	Missense_Mutation	12	6125930	T	A	56	47
BRCA	TCGA-AO-A0J4	NCAPD2	SNP	Missense_Mutation	12	6637440	T	C	55	90
BRCA	TCGA-AO-A0J4	PPP1R12A	SNP	Missense_Mutation	12	80214707	C	G	32	98
BRCA	TCGA-AO-A0J4	EXD2	SNP	Missense_Mutation	14	69704442	C	G	30	72
BRCA	TCGA-AO-A0J4	PCNX	SNP	Missense_Mutation	14	71514550	C	A	28	87
BRCA	TCGA-AO-A0J4	MEGF11	SNP	Missense_Mutation	15	66420684	G	C	35	79
BRCA	TCGA-AO-A0J4	FAM219B	SNP	Missense_Mutation	15	75197529	G	A	41	63
BRCA	TCGA-AO-A0J4	TBC1D2B	SNP	Missense_Mutation	15	78290617	T	C	54	87
BRCA	TCGA-AO-A0J4	NTRK3	SNP	Silent	15	88678459	G	A	39	40
BRCA	TCGA-AO-A0J4	DNAH3	SNP	Missense_Mutation	16	20966319	G	C	45	53
BRCA	TCGA-AO-A0J4	ATMIN	SNP	Missense_Mutation	16	81078489	G	T	45	80
BRCA	TCGA-AO-A0J4	ACACA	SNP	Missense_Mutation	17	35563786	C	G	29	80
BRCA	TCGA-AO-A0J4	PRR11	SNP	Missense_Mutation	17	57262479	A	T	5	57
BRCA	TCGA-AO-A0J4	TP53	SNP	Missense_Mutation	17	7577094	G	A	39	66
BRCA	TCGA-AO-A0J4	NOL4	SNP	Silent	18	31803107	G	C	41	60
BRCA	TCGA-AO-A0J4	EPS15L1	SNP	Silent	19	16528786	C	T	27	24
BRCA	TCGA-AO-A0J4	SYNE4	SNP	Missense_Mutation	19	36494306	G	C	33	61
BRCA	TCGA-AO-A0J4	LEUTX	SNP	Missense_Mutation	19	40276356	C	T	27	51
BRCA	TCGA-AO-A0J4	PLEKHA4	SNP	Silent	19	49355488	G	C	43	51
BRCA	TCGA-AO-A0J4	XIRP2	SNP	Missense_Mutation	2	168106882	G	A	33	49
BRCA	TCGA-AO-A0J4	LRP2	SNP	Missense_Mutation	2	170063010	T	C	60	80
BRCA	TCGA-AO-A0J4	TTN	SNP	Missense_Mutation	2	179621321	G	C	45	60
BRCA	TCGA-AO-A0J4	SLC11A1	SNP	Missense_Mutation	2	219255977	C	A	17	80
BRCA	TCGA-AO-A0J4	UGT1A3	SNP	Silent	2	234638186	C	T	29	51
BRCA	TCGA-AO-A0J4	MSH6	SNP	Missense_Mutation	2	48027198	A	C	1	63
BRCA	TCGA-AO-A0J4	OCSTAMP	SNP	Nonsense_Mutation	20	45174807	C	T	21	87
BRCA	TCGA-AO-A0J4	GART	SNP	Silent	21	34897279	C	T	21	50
BRCA	TCGA-AO-A0J4	SMTN	SNP	Missense_Mutation	22	31484057	G	A	40	92
BRCA	TCGA-AO-A0J4	L3MBTL2	SNP	Missense_Mutation	22	41623175	C	T	19	85
BRCA	TCGA-AO-A0J4	GRAMD4	SNP	Missense_Mutation	22	47064620	A	T	3	83
BRCA	TCGA-AO-A0J4	HNRNPH2	SNP	Missense_Mutation	23	100668305	C	A	20	51
BRCA	TCGA-AO-A0J4	PPEF1	SNP	Silent	23	18748318	C	T	29	62
BRCA	TCGA-AO-A0J4	KIF4A	SNP	Missense_Mutation	23	69521793	C	G	20	67
BRCA	TCGA-AO-A0J4	IQSEC1	SNP	Missense_Mutation	3	12977153	C	G	29	97
BRCA	TCGA-AO-A0J4	DZIP1L	SNP	Missense_Mutation	3	137781705	C	G	21	58
BRCA	TCGA-AO-A0J4	MFN1	SNP	Missense_Mutation	3	179094864	G	C	45	98
BRCA	TCGA-AO-A0J4	ABCF3	SNP	Silent	3	183909040	T	C	59	54
BRCA	TCGA-AO-A0J4	LRRC33	SNP	Missense_Mutation	3	196387122	G	T	42	64
BRCA	TCGA-AO-A0J4	GADL1	SNP	Splice_Site	3	30892434	C	A	20	90
BRCA	TCGA-AO-A0J4	PPP4R2	SNP	Missense_Mutation	3	73114268	G	C	33	87
BRCA	TCGA-AO-A0J4	SLIT2	DEL	Frame_Shift_Del	4	20525795	G	-	48	100
BRCA	TCGA-AO-A0J4	LPHN3	SNP	Silent	4	62778466	C	T	24	60
BRCA	TCGA-AO-A0J4	FAM190A	SNP	Nonsense_Mutation	4	91230078	C	T	17	61
BRCA	TCGA-AO-A0J4	LIFR	SNP	Silent	5	38496650	T	C	49	34
BRCA	TCGA-AO-A0J4	CKMT2	SNP	Missense_Mutation	5	80553589	G	C	45	100
BRCA	TCGA-AO-A0J4	TNFAIP3	SNP	Silent	6	138201278	G	T	41	36
BRCA	TCGA-AO-A0J4	PHACTR2	DEL	In_Frame_Del	6	144093518	TGACTC	-	51	54
BRCA	TCGA-AO-A0J4	STXBP5	SNP	Missense_Mutation	6	147680336	G	A	41	97
BRCA	TCGA-AO-A0J4	GMPR	SNP	Silent	6	16279067	T	C	59	49
BRCA	TCGA-AO-A0J4	PRPF4B	SNP	Missense_Mutation	6	4021684	C	A	28	60
BRCA	TCGA-AO-A0J4	MLL5	SNP	Missense_Mutation	7	104753730	C	A	17	82
BRCA	TCGA-AO-A0J4	CNTNAP2	SNP	Missense_Mutation	7	148112562	C	T	23	98
BRCA	TCGA-AO-A0J4	CPVL	DEL	In_Frame_Del	7	29103772	TCTGATTCCCCACGTGGA	-	58	76
BRCA	TCGA-AO-A0J4	USP42	SNP	Missense_Mutation	7	6193520	C	T	23	45
BRCA	TCGA-AO-A0J4	TYW1	SNP	Missense_Mutation	7	66474604	C	A	30	60
BRCA	TCGA-AO-A0J4	CLIP2	SNP	Missense_Mutation	7	73790923	G	A	40	82
BRCA	TCGA-AO-A0J4	RGS22	SNP	Nonsense_Mutation	8	101075866	G	C	45	50
BRCA	TCGA-AO-A0J4	ASAP1	SNP	Silent	8	131140243	C	G	29	87
BRCA	TCGA-AO-A0J4	ADCY8	SNP	Silent	8	132051962	G	C	43	42
BRCA	TCGA-AO-A0J4	LCN10	DEL	Frame_Shift_Del	9	139634413	A	-	11	63
BRCA	TCGA-AO-A0J4	CACNA1B	SNP	Missense_Mutation	9	140938303	C	T	23	53
BRCA	TCGA-AO-A0J4	PSIP1	SNP	Silent	9	15486061	C	G	29	64
BRCA	TCGA-AO-A0J5	CACNA1E	SNP	Nonsense_Mutation	1	181688962	C	T	27	56
BRCA	TCGA-AO-A0J5	FAM5C	SNP	Silent	1	190067727	A	G	12	51
BRCA	TCGA-AO-A0J5	CSMD2	SNP	Nonsense_Mutation	1	34312489	G	C	44	58
BRCA	TCGA-AO-A0J5	LRRC7	SNP	Missense_Mutation	1	70291446	C	T	21	92
BRCA	TCGA-AO-A0J5	LRRC7	SNP	Missense_Mutation	1	70504659	G	C	36	66
BRCA	TCGA-AO-A0J5	SEC31B	SNP	Silent	10	102247412	C	T	29	76
BRCA	TCGA-AO-A0J5	GATA3	INS	Frame_Shift_Ins	10	8111494	-	CTGGAGG	54	91
BRCA	TCGA-AO-A0J5	C10orf12	SNP	Missense_Mutation	10	98744677	C	T	26	54
BRCA	TCGA-AO-A0J5	SLC1A2	SNP	Missense_Mutation	11	35327749	G	A	39	73
BRCA	TCGA-AO-A0J5	AACS	SNP	Missense_Mutation	12	125561123	C	G	17	61
BRCA	TCGA-AO-A0J5	TMEM132D	SNP	Missense_Mutation	12	129559224	C	A	24	43
BRCA	TCGA-AO-A0J5	PIWIL1	SNP	Silent	12	130831527	G	A	45	59
BRCA	TCGA-AO-A0J5	PDE3A	SNP	Silent	12	20799761	C	T	19	44
BRCA	TCGA-AO-A0J5	IFT88	INS	Splice_site	13	21170288	-	T	34	95
BRCA	TCGA-AO-A0J5	TSC22D1	SNP	Missense_Mutation	13	45148362	G	T	41	67
BRCA	TCGA-AO-A0J5	MAGEL2	SNP	Missense_Mutation	15	23890432	C	T	25	50
BRCA	TCGA-AO-A0J5	IFT140	INS	Frame_Shift_Ins	16	1561044	-	C	59	29
BRCA	TCGA-AO-A0J5	RNF222	SNP	Missense_Mutation	17	8296596	G	A	43	92
BRCA	TCGA-AO-A0J5	ZNF69	SNP	Missense_Mutation	19	12016540	C	T	22	71
BRCA	TCGA-AO-A0J5	SLC27A1	SNP	Missense_Mutation	19	17608208	C	T	19	59
BRCA	TCGA-AO-A0J5	SSC5D	SNP	Silent	19	56029381	T	C	50	48
BRCA	TCGA-AO-A0J5	ITGA4	SNP	Silent	2	182339924	G	A	33	58
BRCA	TCGA-AO-A0J5	DOCK10	SNP	Missense_Mutation	2	225727415	C	T	22	96
BRCA	TCGA-AO-A0J5	BIRC6	SNP	Missense_Mutation	2	32702619	T	A	51	92
BRCA	TCGA-AO-A0J5	PPM1B	SNP	Missense_Mutation	2	44457659	G	A	46	85
BRCA	TCGA-AO-A0J5	DYSF	DEL	Frame_Shift_Del	2	71738993	C	-	30	53
BRCA	TCGA-AO-A0J5	DYSF	INS	Frame_Shift_Ins	2	71739000	-	A	22	48
BRCA	TCGA-AO-A0J5	COX4I2	SNP	Splice_Site	20	30227901	G	A	48	84
BRCA	TCGA-AO-A0J5	ZNF831	SNP	Missense_Mutation	20	57768868	C	A	24	55
BRCA	TCGA-AO-A0J5	TOM1	SNP	Missense_Mutation	22	35695926	A	G	10	79
BRCA	TCGA-AO-A0J5	CLCN4	SNP	Silent	23	10181872	C	T	30	56
BRCA	TCGA-AO-A0J5	HDAC6	SNP	Missense_Mutation	23	48674948	G	T	45	67
BRCA	TCGA-AO-A0J5	MSN	SNP	Silent	23	64958834	C	T	22	49
BRCA	TCGA-AO-A0J5	CXCR3	SNP	Missense_Mutation	23	70836243	G	T	44	79
BRCA	TCGA-AO-A0J5	MBNL1	DEL	Frame_Shift_Del	3	152177106	C	-	18	98
BRCA	TCGA-AO-A0J5	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AO-A0J5	SETD5	SNP	Splice_site	3	9484993	T	A	59	94
BRCA	TCGA-AO-A0J5	ANKRD55	SNP	Nonsense_Mutation	5	55396075	G	A	40	61
BRCA	TCGA-AO-A0J5	HIVEP1	SNP	Missense_Mutation	6	12125489	C	T	18	75
BRCA	TCGA-AO-A0J5	NUP205	SNP	Missense_Mutation	7	135333164	G	A	46	67
BRCA	TCGA-AO-A0J5	LSM5	SNP	Missense_Mutation	7	32529949	G	A	37	97
BRCA	TCGA-AO-A0J5	OXR1	SNP	Splice_site	8	107726212	A	T	11	92
BRCA	TCGA-AO-A0J5	SCRIB	DEL	Frame_Shift_Del	8	144891156	C	-	30	74
BRCA	TCGA-AO-A0J5	DOCK5	SNP	Missense_Mutation	8	25261154	G	T	44	61
BRCA	TCGA-AO-A0J5	PSIP1	INS	Frame_Shift_Ins	9	15490113	-	A	53	58
BRCA	TCGA-AO-A0J6	BCL9	DEL	Frame_Shift_Del	1	147092484	GGGG	-	47	61
BRCA	TCGA-AO-A0J6	BCL9	SNP	Missense_Mutation	1	147092488	C	T	27	85
BRCA	TCGA-AO-A0J6	C1orf54	SNP	Missense_Mutation	1	150246528	G	A	45	57
BRCA	TCGA-AO-A0J6	ZNF687	SNP	Silent	1	151259889	C	G	22	55
BRCA	TCGA-AO-A0J6	INTS3	SNP	Missense_Mutation	1	153734075	A	T	3	87
BRCA	TCGA-AO-A0J6	TAGLN2	SNP	Missense_Mutation	1	159889125	C	G	22	90
BRCA	TCGA-AO-A0J6	USF1	SNP	Splice_Site	1	161011904	A	C	14	60
BRCA	TCGA-AO-A0J6	TDRD5	SNP	Missense_Mutation	1	179632507	G	A	33	64
BRCA	TCGA-AO-A0J6	FAM5C	SNP	Missense_Mutation	1	190068109	G	A	33	82
BRCA	TCGA-AO-A0J6	PIK3C2B	SNP	Missense_Mutation	1	204403609	C	T	26	87
BRCA	TCGA-AO-A0J6	RASSF5	SNP	Missense_Mutation	1	206760274	G	C	35	51
BRCA	TCGA-AO-A0J6	USH2A	SNP	Missense_Mutation	1	216062079	T	G	60	78
BRCA	TCGA-AO-A0J6	OBSCN	SNP	Silent	1	228467646	C	G	22	43
BRCA	TCGA-AO-A0J6	KIAA1383	SNP	Missense_Mutation	1	232942237	C	G	17	50
BRCA	TCGA-AO-A0J6	NID1	SNP	Missense_Mutation	1	236205393	G	C	33	54
BRCA	TCGA-AO-A0J6	GJB5	SNP	Missense_Mutation	1	35223621	C	A	18	55
BRCA	TCGA-AO-A0J6	HIVEP3	SNP	Missense_Mutation	1	42046159	C	A	28	100
BRCA	TCGA-AO-A0J6	NSUN4	SNP	Missense_Mutation	1	46818635	C	G	29	57
BRCA	TCGA-AO-A0J6	DIO1	SNP	Silent	1	54371907	G	A	34	58
BRCA	TCGA-AO-A0J6	TCEANC2	SNP	Silent	1	54534542	C	A	21	53
BRCA	TCGA-AO-A0J6	COX15	SNP	Missense_Mutation	10	101483877	G	C	33	95
BRCA	TCGA-AO-A0J6	FAM53B	SNP	Nonsense_Mutation	10	126370497	G	T	42	63
BRCA	TCGA-AO-A0J6	OR52A5	SNP	Missense_Mutation	11	5153708	G	C	48	35
BRCA	TCGA-AO-A0J6	OR51B4	SNP	Missense_Mutation	11	5322935	C	A	18	58
BRCA	TCGA-AO-A0J6	AHNAK	SNP	Missense_Mutation	11	62288240	C	G	18	57
BRCA	TCGA-AO-A0J6	CHRM1	SNP	Missense_Mutation	11	62678402	C	A	32	71
BRCA	TCGA-AO-A0J6	MRPL48	SNP	Missense_Mutation	11	73574260	T	A	49	79
BRCA	TCGA-AO-A0J6	FBXO21	SNP	Missense_Mutation	12	117604733	A	G	8	91
BRCA	TCGA-AO-A0J6	MPHOSPH9	SNP	Missense_Mutation	12	123703035	G	A	48	79
BRCA	TCGA-AO-A0J6	DNAH10	DEL	Frame_Shift_Del	12	124382415	CAGAAATTGAGGCG	-	17	85
BRCA	TCGA-AO-A0J6	SCARB1	SNP	Missense_Mutation	12	125296490	G	A	34	51
BRCA	TCGA-AO-A0J6	TUBA1B	SNP	Missense_Mutation	12	49523054	C	G	29	96
BRCA	TCGA-AO-A0J6	SCN8A	SNP	Missense_Mutation	12	52182482	A	C	2	88
BRCA	TCGA-AO-A0J6	KRT4	SNP	Missense_Mutation	12	53208015	T	C	50	59
BRCA	TCGA-AO-A0J6	NAP1L1	SNP	Missense_Mutation	12	76453633	T	A	49	69
BRCA	TCGA-AO-A0J6	FAM90A1	SNP	Missense_Mutation	12	8376138	C	A	32	38
BRCA	TCGA-AO-A0J6	C12orf55	DEL	Frame_Shift_Del	12	97043730	ACAA	-	6	48
BRCA	TCGA-AO-A0J6	ARL11	SNP	Missense_Mutation	13	50204809	G	A	41	57
BRCA	TCGA-AO-A0J6	FARP1	SNP	Missense_Mutation	13	99061690	G	A	37	80
BRCA	TCGA-AO-A0J6	FRMD6	SNP	Silent	14	52186813	G	C	47	67
BRCA	TCGA-AO-A0J6	GOLGA8J	SNP	Missense_Mutation	15	30435851	G	A	42	65
BRCA	TCGA-AO-A0J6	SNN	SNP	Missense_Mutation	16	11770041	C	G	26	69
BRCA	TCGA-AO-A0J6	PRKCB	SNP	Missense_Mutation	16	24183606	G	T	48	98
BRCA	TCGA-AO-A0J6	CES5A	SNP	Missense_Mutation	16	55903634	C	T	18	91
BRCA	TCGA-AO-A0J6	DNAH9	SNP	Silent	17	11520810	G	A	39	18
BRCA	TCGA-AO-A0J6	WIPF2	SNP	Silent	17	38412741	A	T	6	24
BRCA	TCGA-AO-A0J6	KRT19	SNP	Missense_Mutation	17	39680125	C	T	23	75
BRCA	TCGA-AO-A0J6	GRB2	SNP	Missense_Mutation	17	73316459	C	T	23	83
BRCA	TCGA-AO-A0J6	TP53	DEL	Frame_Shift_Del	17	7578218	T	-	59	88
BRCA	TCGA-AO-A0J6	CLUL1	SNP	Missense_Mutation	18	618071	G	C	47	58
BRCA	TCGA-AO-A0J6	DSEL	DEL	Frame_Shift_Del	18	65178887	C	-	26	84
BRCA	TCGA-AO-A0J6	ACP5	SNP	Missense_Mutation	19	11686061	G	C	46	54
BRCA	TCGA-AO-A0J6	STX10	SNP	Silent	19	13260582	G	T	46	51
BRCA	TCGA-AO-A0J6	OR10H4	SNP	Missense_Mutation	19	16060433	G	A	48	48
BRCA	TCGA-AO-A0J6	UNC13A	SNP	Missense_Mutation	19	17768991	G	A	40	93
BRCA	TCGA-AO-A0J6	ZNF850	SNP	Missense_Mutation	19	37239751	C	A	21	54
BRCA	TCGA-AO-A0J6	LTBP4	SNP	Nonsense_Mutation	19	41133242	G	T	45	66
BRCA	TCGA-AO-A0J6	ATP1A3	SNP	Missense_Mutation	19	42482310	C	T	26	93
BRCA	TCGA-AO-A0J6	PVRL2	SNP	Missense_Mutation	19	45368575	C	G	28	53
BRCA	TCGA-AO-A0J6	IGFL4	DEL	Frame_Shift_Del	19	46543640	CCTGGGCG	-	18	48
BRCA	TCGA-AO-A0J6	LRRC4B	SNP	Missense_Mutation	19	51021546	C	A	18	48
BRCA	TCGA-AO-A0J6	EPS8L1	SNP	Missense_Mutation	19	55598949	G	C	35	64
BRCA	TCGA-AO-A0J6	EMR1	SNP	Missense_Mutation	19	6926403	C	A	30	39
BRCA	TCGA-AO-A0J6	MED16	SNP	Missense_Mutation	19	884973	G	C	37	37
BRCA	TCGA-AO-A0J6	PTPN18	DEL	In_Frame_Del	2	131128528	CAT	-	17	53
BRCA	TCGA-AO-A0J6	LRP1B	SNP	Silent	2	141528484	T	C	50	49
BRCA	TCGA-AO-A0J6	CHRNA1	SNP	Silent	2	175618463	G	A	38	40
BRCA	TCGA-AO-A0J6	TTN	SNP	Missense_Mutation	2	179442477	G	C	44	54
BRCA	TCGA-AO-A0J6	RHOB	SNP	Missense_Mutation	2	20647263	G	T	37	88
BRCA	TCGA-AO-A0J6	TET3	SNP	Missense_Mutation	2	74274174	C	A	18	67
BRCA	TCGA-AO-A0J6	SIRPB1	SNP	Missense_Mutation	20	1600536	G	C	34	61
BRCA	TCGA-AO-A0J6	C20orf26	SNP	Silent	20	20232263	T	C	51	51
BRCA	TCGA-AO-A0J6	BPIFA2	SNP	Missense_Mutation	20	31757009	T	C	58	49
BRCA	TCGA-AO-A0J6	SLC12A5	SNP	Missense_Mutation	20	44669237	G	T	37	83
BRCA	TCGA-AO-A0J6	PLCB4	DEL	In_Frame_Del	20	9319564	TGAAGC	-	63	48
BRCA	TCGA-AO-A0J6	SYNJ1	SNP	Silent	21	34099183	C	T	30	50
BRCA	TCGA-AO-A0J6	SEZ6L	SNP	Missense_Mutation	22	26689012	A	T	3	49
BRCA	TCGA-AO-A0J6	CYP2D6	INS	Frame_Shift_Ins	22	42525144	-	T	26	50
BRCA	TCGA-AO-A0J6	WWC3	DEL	Frame_Shift_Del	23	10096136	GCTGGGTGTGCAGGAGAGA	-	42	38
BRCA	TCGA-AO-A0J6	NXF3	SNP	Silent	23	102332671	C	T	17	38
BRCA	TCGA-AO-A0J6	NRK	SNP	Missense_Mutation	23	105149332	G	A	39	68
BRCA	TCGA-AO-A0J6	GRIA3	DEL	Frame_Shift_Del	23	122532651	AATGGTAAAGACCAC	-	1	77
BRCA	TCGA-AO-A0J6	ARHGEF6	SNP	Missense_Mutation	23	135764932	A	T	6	54
BRCA	TCGA-AO-A0J6	FXR1	SNP	Missense_Mutation	3	180675642	G	C	33	100
BRCA	TCGA-AO-A0J6	NR1D2	SNP	Nonsense_Mutation	3	24018854	C	T	31	100
BRCA	TCGA-AO-A0J6	NGLY1	SNP	Missense_Mutation	3	25761640	A	G	9	70
BRCA	TCGA-AO-A0J6	WDR48	SNP	Missense_Mutation	3	39118666	A	G	4	54
BRCA	TCGA-AO-A0J6	PLK4	SNP	Missense_Mutation	4	128804612	G	C	33	100
BRCA	TCGA-AO-A0J6	SCLT1	SNP	Missense_Mutation	4	129873937	G	A	45	67
BRCA	TCGA-AO-A0J6	FGFBP1	DEL	Frame_Shift_Del	4	15938036	CAGTAGCAGCC	-	29	58
BRCA	TCGA-AO-A0J6	SCARB2	SNP	Silent	4	77100835	C	T	25	50
BRCA	TCGA-AO-A0J6	MYO10	SNP	Missense_Mutation	5	16818206	C	T	26	98
BRCA	TCGA-AO-A0J6	RANBP17	SNP	Splice_site	5	170597134	G	T	44	73
BRCA	TCGA-AO-A0J6	LAMA2	SNP	Missense_Mutation	6	129824389	G	C	45	68
BRCA	TCGA-AO-A0J6	TULP4	SNP	Missense_Mutation	6	158924964	C	A	26	84
BRCA	TCGA-AO-A0J6	PI16	SNP	Missense_Mutation	6	36931628	G	C	40	25
BRCA	TCGA-AO-A0J6	KLHDC3	SNP	Missense_Mutation	6	42986630	A	C	9	65
BRCA	TCGA-AO-A0J6	PHF3	SNP	Splice_site	6	64416113	C	T	19	60
BRCA	TCGA-AO-A0J6	COL19A1	SNP	Silent	6	70610189	C	G	24	47
BRCA	TCGA-AO-A0J6	RIMS1	SNP	Missense_Mutation	6	72960981	C	T	17	100
BRCA	TCGA-AO-A0J6	SNX13	SNP	Missense_Mutation	7	17915306	T	A	50	76
BRCA	TCGA-AO-A0J6	TNRC18	SNP	Missense_Mutation	7	5352742	C	A	22	61
BRCA	TCGA-AO-A0J6	EIF2AK1	SNP	Splice_Site	7	6077156	C	T	24	88
BRCA	TCGA-AO-A0J6	C7orf62	SNP	Silent	7	88424032	T	A	55	43
BRCA	TCGA-AO-A0J6	SLC45A4	SNP	Missense_Mutation	8	142222615	C	G	26	92
BRCA	TCGA-AO-A0J6	NR4A3	SNP	Silent	9	102590381	G	A	38	50
BRCA	TCGA-AO-A0J6	C9orf43	SNP	Missense_Mutation	9	116191234	A	C	7	49
BRCA	TCGA-AO-A0J6	CNTLN	SNP	Missense_Mutation	9	17409379	G	C	33	61
BRCA	TCGA-AO-A0J6	IFNE	SNP	Missense_Mutation	9	21481513	G	C	33	45
BRCA	TCGA-AO-A0J7	VSIG8	SNP	Missense_Mutation	1	159828534	C	T	31	55
BRCA	TCGA-AO-A0J7	NCSTN	SNP	Missense_Mutation	1	160323977	A	G	1	49
BRCA	TCGA-AO-A0J7	PGBD2	SNP	Silent	1	249210906	G	A	33	51
BRCA	TCGA-AO-A0J7	ALOX5	SNP	Nonsense_Mutation	10	45878089	G	A	41	95
BRCA	TCGA-AO-A0J7	STOX1	SNP	Silent	10	70644128	C	T	20	68
BRCA	TCGA-AO-A0J7	PGR	INS	Frame_Shift_Ins	11	100996740	-	C	62	79
BRCA	TCGA-AO-A0J7	KCNH7	SNP	Missense_Mutation	2	163302895	T	C	60	92
BRCA	TCGA-AO-A0J7	G6PC2	SNP	Missense_Mutation	2	169757925	T	A	61	56
BRCA	TCGA-AO-A0J7	SH3BP4	SNP	Missense_Mutation	2	235950945	G	A	38	62
BRCA	TCGA-AO-A0J7	TRMT2B	SNP	Nonsense_Mutation	23	100275554	G	A	45	52
BRCA	TCGA-AO-A0J7	PLXNA1	SNP	Missense_Mutation	3	126752825	G	A	41	81
BRCA	TCGA-AO-A0J7	PIK3CA	SNP	Missense_Mutation	3	178936094	C	A	25	98
BRCA	TCGA-AO-A0J7	PRSS42	SNP	Missense_Mutation	3	46873464	A	G	8	60
BRCA	TCGA-AO-A0J7	LOC100287294	SNP	Missense_Mutation	7	57011894	G	T	44	65
BRCA	TCGA-AO-A0J7	INTS10	SNP	Splice_Site	8	19679949	G	A	35	94
BRCA	TCGA-AO-A0J7	FAM205A	SNP	Missense_Mutation	9	34723329	G	A	41	57
BRCA	TCGA-AO-A0J7	S1PR3	SNP	Silent	9	91616760	C	T	19	48
BRCA	TCGA-AO-A0J8	FLG	SNP	Missense_Mutation	1	152277116	C	T	31	45
BRCA	TCGA-AO-A0J8	PSEN2	SNP	Missense_Mutation	1	227077759	A	G	5	91
BRCA	TCGA-AO-A0J8	FAAH	SNP	Missense_Mutation	1	46871162	C	T	21	83
BRCA	TCGA-AO-A0J8	FAAH	SNP	Silent	1	46874199	G	C	39	27
BRCA	TCGA-AO-A0J8	PNLIPRP1	SNP	Missense_Mutation	10	118354350	G	A	44	60
BRCA	TCGA-AO-A0J8	ZMIZ1	SNP	Missense_Mutation	10	81053147	A	C	6	67
BRCA	TCGA-AO-A0J8	MMS19	SNP	Missense_Mutation	10	99223754	T	A	52	49
BRCA	TCGA-AO-A0J8	SLC41A2	SNP	Missense_Mutation	12	105322236	C	T	17	68
BRCA	TCGA-AO-A0J8	ATP6V0A2	SNP	Silent	12	124229203	G	A	48	53
BRCA	TCGA-AO-A0J8	MBD6	SNP	Nonsense_Mutation	12	57922155	C	T	23	64
BRCA	TCGA-AO-A0J8	TSC22D1	SNP	Nonsense_Mutation	13	45148149	G	A	45	76
BRCA	TCGA-AO-A0J8	DACT1	SNP	Silent	14	59113588	C	T	17	59
BRCA	TCGA-AO-A0J8	CLMN	SNP	Missense_Mutation	14	95688048	T	C	61	66
BRCA	TCGA-AO-A0J8	CDH1	DEL	Frame_Shift_Del	16	68857485	T	-	52	73
BRCA	TCGA-AO-A0J8	ZNF613	SNP	Silent	19	52448195	C	T	30	73
BRCA	TCGA-AO-A0J8	FAM199X	SNP	Missense_Mutation	23	103430808	C	T	21	96
BRCA	TCGA-AO-A0J8	AMMECR1	DEL	Frame_Shift_Del	23	109507722	AAGTGTGTACTCCCTGA	-	13	77
BRCA	TCGA-AO-A0J8	DOCK11	SNP	Silent	23	117752580	G	C	45	67
BRCA	TCGA-AO-A0J8	SLC9A7	SNP	Silent	23	46618330	C	A	22	55
BRCA	TCGA-AO-A0J8	ADH1A	SNP	Missense_Mutation	4	100205585	C	G	21	90
BRCA	TCGA-AO-A0J8	NDFIP1	SNP	Missense_Mutation	5	141515313	C	T	31	58
BRCA	TCGA-AO-A0J8	PDZD2	SNP	Missense_Mutation	5	31799549	A	G	9	66
BRCA	TCGA-AO-A0J8	NR2E1	SNP	Missense_Mutation	6	108492770	G	A	37	100
BRCA	TCGA-AO-A0J8	WBSCR17	SNP	Missense_Mutation	7	70597969	G	T	41	87
BRCA	TCGA-AO-A0J8	TPD52	SNP	Silent	8	80992644	C	T	19	32
BRCA	TCGA-AO-A0J9	CHI3L2	SNP	Missense_Mutation	1	111777558	C	T	29	50
BRCA	TCGA-AO-A0J9	GPATCH4	SNP	Missense_Mutation	1	156565526	C	G	32	65
BRCA	TCGA-AO-A0J9	EDEM3	DEL	Frame_Shift_Del	1	184695514	TTAAA	-	64	73
BRCA	TCGA-AO-A0J9	NFASC	SNP	Missense_Mutation	1	204923466	C	G	17	75
BRCA	TCGA-AO-A0J9	CELA3B	SNP	Missense_Mutation	1	22310738	G	A	45	60
BRCA	TCGA-AO-A0J9	MACF1	SNP	Nonsense_Mutation	1	39798343	C	G	29	75
BRCA	TCGA-AO-A0J9	CPN1	SNP	Missense_Mutation	10	101808562	C	T	29	52
BRCA	TCGA-AO-A0J9	DDX50	SNP	Missense_Mutation	10	70666626	G	T	33	58
BRCA	TCGA-AO-A0J9	ZNF259	SNP	Nonsense_Mutation	11	116655592	G	A	45	66
BRCA	TCGA-AO-A0J9	CORO1C	SNP	Missense_Mutation	12	109042522	G	C	33	52
BRCA	TCGA-AO-A0J9	ACACB	SNP	Missense_Mutation	12	109678904	A	T	8	91
BRCA	TCGA-AO-A0J9	SOX5	SNP	Missense_Mutation	12	23687346	C	T	28	100
BRCA	TCGA-AO-A0J9	STK38L	SNP	Missense_Mutation	12	27461300	G	A	38	93
BRCA	TCGA-AO-A0J9	ANKS1B	SNP	Missense_Mutation	12	99447042	C	T	29	96
BRCA	TCGA-AO-A0J9	CCDC168	SNP	Silent	13	103385449	C	T	23	42
BRCA	TCGA-AO-A0J9	LOC643677	SNP	Missense_Mutation	13	103393346	A	G	14	44
BRCA	TCGA-AO-A0J9	USPL1	SNP	Missense_Mutation	13	31233065	G	A	45	49
BRCA	TCGA-AO-A0J9	COMMD6	SNP	Missense_Mutation	13	76111922	G	A	39	53
BRCA	TCGA-AO-A0J9	NDFIP2	SNP	Missense_Mutation	13	80055541	C	T	19	62
BRCA	TCGA-AO-A0J9	MYH6	SNP	Missense_Mutation	14	23871908	C	G	31	93
BRCA	TCGA-AO-A0J9	MIPOL1	SNP	Silent	14	37838826	G	A	45	72
BRCA	TCGA-AO-A0J9	SYNE2	SNP	Missense_Mutation	14	64580077	G	A	45	39
BRCA	TCGA-AO-A0J9	SIPA1L1	SNP	Missense_Mutation	14	72139081	G	A	48	100
BRCA	TCGA-AO-A0J9	LTBP2	SNP	Silent	14	74995673	G	A	33	54
BRCA	TCGA-AO-A0J9	SEL1L	SNP	Silent	14	81953845	C	T	29	59
BRCA	TCGA-AO-A0J9	GABRG3	SNP	Missense_Mutation	15	27777879	G	A	46	100
BRCA	TCGA-AO-A0J9	GOLGA8J	SNP	Silent	15	30435865	C	A	29	49
BRCA	TCGA-AO-A0J9	FBN1	SNP	Silent	15	48780599	G	A	34	58
BRCA	TCGA-AO-A0J9	CCP110	SNP	Silent	16	19547333	C	T	29	58
BRCA	TCGA-AO-A0J9	NDRG4	SNP	Silent	16	58538514	C	T	31	25
BRCA	TCGA-AO-A0J9	CDH1	DEL	Frame_Shift_Del	16	68849648	G	-	47	83
BRCA	TCGA-AO-A0J9	MTMR4	SNP	Missense_Mutation	17	56573225	C	A	28	50
BRCA	TCGA-AO-A0J9	KPNA2	SNP	Missense_Mutation	17	66036815	G	A	45	97
BRCA	TCGA-AO-A0J9	RNMTL1	SNP	Silent	17	685930	G	A	45	51
BRCA	TCGA-AO-A0J9	DNAH2	SNP	Missense_Mutation	17	7627002	G	C	33	60
BRCA	TCGA-AO-A0J9	THOC1	SNP	Missense_Mutation	18	247878	C	T	29	81
BRCA	TCGA-AO-A0J9	CDH19	SNP	Splice_Site	18	64211462	C	T	32	95
BRCA	TCGA-AO-A0J9	IL27RA	SNP	Missense_Mutation	19	14143266	C	G	32	49
BRCA	TCGA-AO-A0J9	ZNF486	SNP	Silent	19	20308257	C	T	32	45
BRCA	TCGA-AO-A0J9	PSG4	SNP	Missense_Mutation	19	43699378	C	G	32	60
BRCA	TCGA-AO-A0J9	OBSL1	DEL	Frame_Shift_Del	2	220432006	G	-	33	62
BRCA	TCGA-AO-A0J9	SPTBN1	SNP	Silent	2	54874276	G	A	33	79
BRCA	TCGA-AO-A0J9	TRPC4AP	SNP	Missense_Mutation	20	33609154	T	C	51	52
BRCA	TCGA-AO-A0J9	CPNE1	SNP	Missense_Mutation	20	34215288	G	A	37	65
BRCA	TCGA-AO-A0J9	SPINLW1-WFDC6	SNP	Silent	20	44166723	G	A	47	53
BRCA	TCGA-AO-A0J9	CSE1L	SNP	Missense_Mutation	20	47686760	G	A	45	100
BRCA	TCGA-AO-A0J9	C20orf43	SNP	Missense_Mutation	20	55043817	G	C	45	97
BRCA	TCGA-AO-A0J9	SCAF4	SNP	Missense_Mutation	21	33067193	A	G	6	72
BRCA	TCGA-AO-A0J9	PI4KA	SNP	Missense_Mutation	22	21159370	G	C	33	89
BRCA	TCGA-AO-A0J9	PRR14L	SNP	Missense_Mutation	22	32111820	C	T	29	51
BRCA	TCGA-AO-A0J9	TSC22D3	SNP	Missense_Mutation	23	107018376	G	A	39	71
BRCA	TCGA-AO-A0J9	LRRC3B	SNP	Silent	3	26751433	G	A	45	52
BRCA	TCGA-AO-A0J9	DNAH12	SNP	Missense_Mutation	3	57443474	G	A	45	82
BRCA	TCGA-AO-A0J9	ANKRD17	SNP	Missense_Mutation	4	74019654	T	C	51	90
BRCA	TCGA-AO-A0J9	FNIP1	SNP	Missense_Mutation	5	130841179	C	T	30	100
BRCA	TCGA-AO-A0J9	LRRTM2	SNP	Missense_Mutation	5	138210089	G	A	45	74
BRCA	TCGA-AO-A0J9	PCDHB10	SNP	Missense_Mutation	5	140573243	G	T	33	52
BRCA	TCGA-AO-A0J9	SREK1IP1	SNP	Missense_Mutation	5	64050168	C	T	32	77
BRCA	TCGA-AO-A0J9	MAST4	SNP	Missense_Mutation	5	66438062	G	A	45	100
BRCA	TCGA-AO-A0J9	AGGF1	SNP	Missense_Mutation	5	76349934	G	A	45	69
BRCA	TCGA-AO-A0J9	RHOBTB3	SNP	Missense_Mutation	5	95128768	G	C	33	79
BRCA	TCGA-AO-A0J9	ERAP2	SNP	Missense_Mutation	5	96237303	G	A	39	67
BRCA	TCGA-AO-A0J9	TFAP2A	SNP	Missense_Mutation	6	10404880	C	T	31	86
BRCA	TCGA-AO-A0J9	AIM1	SNP	Silent	6	106967048	T	A	53	47
BRCA	TCGA-AO-A0J9	PHF3	SNP	Missense_Mutation	6	64422600	A	C	9	58
BRCA	TCGA-AO-A0J9	RARS2	SNP	Missense_Mutation	6	88299660	G	A	37	75
BRCA	TCGA-AO-A0J9	FOXP2	SNP	Missense_Mutation	7	114329880	G	A	45	99
BRCA	TCGA-AO-A0J9	KLHDC10	SNP	Missense_Mutation	7	129761906	A	T	8	90
BRCA	TCGA-AO-A0J9	NEUROD6	SNP	Missense_Mutation	7	31378659	C	G	32	77
BRCA	TCGA-AO-A0J9	PCLO	SNP	Missense_Mutation	7	82595715	G	A	45	59
BRCA	TCGA-AO-A0J9	CYP3A7	SNP	Missense_Mutation	7	99308411	G	A	45	49
BRCA	TCGA-AO-A0J9	RNF19A	SNP	Missense_Mutation	8	101272152	T	C	60	76
BRCA	TCGA-AO-A0J9	UBR5	SNP	Missense_Mutation	8	103291157	C	T	32	100
BRCA	TCGA-AO-A0J9	EIF3E	SNP	Silent	8	109260902	G	A	37	61
BRCA	TCGA-AO-A0J9	DNM1	SNP	Missense_Mutation	9	130982538	G	T	37	98
BRCA	TCGA-AO-A0J9	ODF2	SNP	Silent	9	131256860	G	A	37	40
BRCA	TCGA-AO-A0J9	IFNA13	SNP	Silent	9	21367848	C	T	29	49
BRCA	TCGA-AO-A0J9	TLN1	SNP	Missense_Mutation	9	35705643	C	G	32	100
BRCA	TCGA-AO-A0J9	UBQLN1	SNP	Silent	9	86294885	C	T	32	59
BRCA	TCGA-AO-A0J9	ECM2	SNP	Missense_Mutation	9	95277306	C	G	32	49
BRCA	TCGA-AO-A0JA	F5	SNP	Missense_Mutation	1	169511852	C	T	32	50
BRCA	TCGA-AO-A0JA	ZNF683	SNP	Missense_Mutation	1	26688342	G	T	47	65
BRCA	TCGA-AO-A0JA	RLF	INS	Frame_Shift_Ins	1	40701837	-	A	29	100
BRCA	TCGA-AO-A0JA	PTEN	SNP	Nonsense_Mutation	10	89692780	T	A	50	56
BRCA	TCGA-AO-A0JA	RAB39A	SNP	Missense_Mutation	11	107833060	G	A	45	98
BRCA	TCGA-AO-A0JA	EXPH5	SNP	Missense_Mutation	11	108383532	G	A	47	53
BRCA	TCGA-AO-A0JA	MICALCL	INS	In_Frame_Ins	11	12316344	-	CTC	34	54
BRCA	TCGA-AO-A0JA	MUC5B	SNP	Missense_Mutation	11	1266662	C	G	31	49
BRCA	TCGA-AO-A0JA	FLRT1	SNP	Silent	11	63883862	C	T	29	49
BRCA	TCGA-AO-A0JA	CPT1A	SNP	Silent	11	68574941	G	A	33	53
BRCA	TCGA-AO-A0JA	NUMA1	SNP	Missense_Mutation	11	71717272	G	A	37	82
BRCA	TCGA-AO-A0JA	EID3	SNP	Missense_Mutation	12	104698208	G	A	45	53
BRCA	TCGA-AO-A0JA	ITPR2	SNP	Missense_Mutation	12	26749818	C	T	29	97
BRCA	TCGA-AO-A0JA	C16orf88	SNP	Silent	16	19725551	C	T	32	49
BRCA	TCGA-AO-A0JA	GPS2	DEL	Frame_Shift_Del	17	7217872	CTTC	-	32	86
BRCA	TCGA-AO-A0JA		SNP	Missense_Mutation	19	35862781	T	C	55	44
BRCA	TCGA-AO-A0JA	IZUMO2	SNP	Silent	19	50661562	C	T	30	48
BRCA	TCGA-AO-A0JA	OR7G1	SNP	Silent	19	9225564	C	T	29	71
BRCA	TCGA-AO-A0JA	IL18RAP	SNP	Missense_Mutation	2	103040327	G	C	48	34
BRCA	TCGA-AO-A0JA	NEU2	DEL	Frame_Shift_Del	2	233899336	AGCCACCTCCG	-	3	75
BRCA	TCGA-AO-A0JA	ASTL	SNP	Silent	2	96798409	C	T	27	38
BRCA	TCGA-AO-A0JA	MORC4	SNP	Missense_Mutation	23	106229353	G	T	41	94
BRCA	TCGA-AO-A0JA	MAP3K15	SNP	Missense_Mutation	23	19478185	C	T	23	73
BRCA	TCGA-AO-A0JA	ZBED1	SNP	Silent	23	2408413	G	A	40	52
BRCA	TCGA-AO-A0JA	MYLK	SNP	Missense_Mutation	3	123444902	G	A	43	80
BRCA	TCGA-AO-A0JA	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-AO-A0JA	COL7A1	SNP	Silent	3	48625779	C	A	27	43
BRCA	TCGA-AO-A0JA	BMPR1B	SNP	Silent	4	96052584	C	T	32	89
BRCA	TCGA-AO-A0JA	LYSMD3	DEL	Frame_Shift_Del	5	89815239	AGACCTAAGGGCA	-	15	52
BRCA	TCGA-AO-A0JA	DNAH11	SNP	Silent	7	21784508	G	T	46	50
BRCA	TCGA-AO-A0JA	CSMD1	SNP	Nonsense_Mutation	8	2910130	G	T	45	78
BRCA	TCGA-AO-A0JA	CSMD1	SNP	Missense_Mutation	8	3245175	C	G	30	99
BRCA	TCGA-AO-A0JB	FRRS1	SNP	Silent	1	100177695	A	G	4	43
BRCA	TCGA-AO-A0JB	LCE1F	SNP	Missense_Mutation	1	152749130	T	C	55	69
BRCA	TCGA-AO-A0JB	SPTA1	SNP	Missense_Mutation	1	158653171	T	C	62	88
BRCA	TCGA-AO-A0JB	DENND1B	SNP	Missense_Mutation	1	197481050	T	G	56	49
BRCA	TCGA-AO-A0JB	USH2A	SNP	Missense_Mutation	1	215848573	T	C	58	66
BRCA	TCGA-AO-A0JB	OBSCN	SNP	Missense_Mutation	1	228492905	G	C	34	74
BRCA	TCGA-AO-A0JB	GCSAML	SNP	Missense_Mutation	1	247712349	C	A	22	51
BRCA	TCGA-AO-A0JB	ENSG00000231472	SNP	Missense_Mutation	10	1382470	G	A	39	58
BRCA	TCGA-AO-A0JB	HERC4	SNP	Splice_site	10	69684843	C	A	17	49
BRCA	TCGA-AO-A0JB	FAM22D	SNP	Missense_Mutation	10	89117989	T	C	55	41
BRCA	TCGA-AO-A0JB	LIPN	SNP	Missense_Mutation	10	90537956	G	A	39	61
BRCA	TCGA-AO-A0JB	SIK2	SNP	Missense_Mutation	11	111575768	C	T	27	71
BRCA	TCGA-AO-A0JB	GLB1L3	SNP	Missense_Mutation	11	134151330	T	G	55	80
BRCA	TCGA-AO-A0JB	UCP2	SNP	Missense_Mutation	11	73689330	A	T	3	78
BRCA	TCGA-AO-A0JB	SRRM4	SNP	Missense_Mutation	12	119552154	G	A	39	76
BRCA	TCGA-AO-A0JB	PIP4K2C	DEL	Frame_Shift_Del	12	57994199	GAAGCTGAAGAGAGATGTGGAGGT	-	33	55
BRCA	TCGA-AO-A0JB	PZP	SNP	Splice_site	12	9307212	C	A	24	81
BRCA	TCGA-AO-A0JB	COL4A1	SNP	Splice_site	13	110859238	C	T	22	70
BRCA	TCGA-AO-A0JB	DNAJC3	SNP	Missense_Mutation	13	96395018	C	G	24	53
BRCA	TCGA-AO-A0JB	AP1G2	SNP	Missense_Mutation	14	24035107	G	T	44	57
BRCA	TCGA-AO-A0JB	SYNDIG1L	SNP	Silent	14	74874370	G	A	36	70
BRCA	TCGA-AO-A0JB	SERPINA4	SNP	Missense_Mutation	14	95030369	G	A	37	48
BRCA	TCGA-AO-A0JB	MGA	SNP	Missense_Mutation	15	42034982	T	A	49	64
BRCA	TCGA-AO-A0JB	UBR1	SNP	Missense_Mutation	15	43347026	C	A	20	52
BRCA	TCGA-AO-A0JB	ST20-MTHFS	SNP	Silent	15	80181580	G	A	34	52
BRCA	TCGA-AO-A0JB	ANKS4B	DEL	In_Frame_Del	16	21261170	GATAATGACTTACAGACTCCACTGGATGCT	-	41	100
BRCA	TCGA-AO-A0JB	NUP93	SNP	Silent	16	56782315	C	T	22	55
BRCA	TCGA-AO-A0JB	ZNF319	SNP	Missense_Mutation	16	58031098	G	C	36	84
BRCA	TCGA-AO-A0JB	B3GNT9	SNP	Missense_Mutation	16	67183643	G	A	38	51
BRCA	TCGA-AO-A0JB	SERPINF1	SNP	Missense_Mutation	17	1675177	A	C	1	74
BRCA	TCGA-AO-A0JB	CUEDC1	SNP	Missense_Mutation	17	55962645	C	A	28	50
BRCA	TCGA-AO-A0JB	LPO	SNP	Missense_Mutation	17	56342263	C	G	29	65
BRCA	TCGA-AO-A0JB	TP53	SNP	Nonsense_Mutation	17	7578212	G	A	37	66
BRCA	TCGA-AO-A0JB	CDH19	SNP	Missense_Mutation	18	64239322	T	G	54	53
BRCA	TCGA-AO-A0JB	ZNF407	SNP	Missense_Mutation	18	72343892	G	C	33	48
BRCA	TCGA-AO-A0JB	LPHN1	SNP	Silent	19	14263360	A	C	6	25
BRCA	TCGA-AO-A0JB	SUGP2	SNP	Silent	19	19115425	G	A	45	67
BRCA	TCGA-AO-A0JB	PSG9	SNP	Missense_Mutation	19	43762251	A	C	8	41
BRCA	TCGA-AO-A0JB	ZNF671	SNP	Missense_Mutation	19	58232832	C	T	29	54
BRCA	TCGA-AO-A0JB	SCN3A	SNP	Missense_Mutation	2	165948952	A	C	8	93
BRCA	TCGA-AO-A0JB	HOXD3	SNP	Missense_Mutation	2	177034213	C	G	23	97
BRCA	TCGA-AO-A0JB	TTN	DEL	Frame_Shift_Del	2	179399740	TCAGAATGGAAATTTCCTTCTTTACCAAAACCTGA	-	62	93
BRCA	TCGA-AO-A0JB	COL6A3	SNP	Silent	2	238283233	G	A	37	25
BRCA	TCGA-AO-A0JB	C2orf16	SNP	Missense_Mutation	2	27803116	C	A	28	53
BRCA	TCGA-AO-A0JB	CEP68	SNP	Missense_Mutation	2	65299282	C	T	20	57
BRCA	TCGA-AO-A0JB	LOXL3	SNP	Missense_Mutation	2	74762843	C	T	20	81
BRCA	TCGA-AO-A0JB	GPAT2	SNP	Silent	2	96689096	G	A	48	59
BRCA	TCGA-AO-A0JB	RIN2	SNP	Silent	20	19970723	G	A	35	52
BRCA	TCGA-AO-A0JB	SEMG1	SNP	Missense_Mutation	20	43836891	C	A	20	49
BRCA	TCGA-AO-A0JB	SON	DEL	Frame_Shift_Del	21	34924699	T	-	55	51
BRCA	TCGA-AO-A0JB	RAB9B	SNP	Missense_Mutation	23	103080633	C	T	19	92
BRCA	TCGA-AO-A0JB	COL4A6	SNP	Missense_Mutation	23	107408206	C	T	23	92
BRCA	TCGA-AO-A0JB	RGAG1	SNP	Missense_Mutation	23	109694149	C	A	22	58
BRCA	TCGA-AO-A0JB	GPR64	SNP	Missense_Mutation	23	19031863	G	A	33	63
BRCA	TCGA-AO-A0JB	TBX22	SNP	Missense_Mutation	23	79282218	A	G	8	79
BRCA	TCGA-AO-A0JB	DNAJB8	SNP	Missense_Mutation	3	128181749	A	C	2	61
BRCA	TCGA-AO-A0JB	DBR1	SNP	Silent	3	137890542	C	A	21	44
BRCA	TCGA-AO-A0JB	KCNIP4	SNP	Missense_Mutation	4	20734354	G	T	41	100
BRCA	TCGA-AO-A0JB	GRK4	SNP	Silent	4	3029685	A	G	3	60
BRCA	TCGA-AO-A0JB	GCM2	SNP	Missense_Mutation	6	10877583	A	C	15	79
BRCA	TCGA-AO-A0JB	C6orf70	SNP	Missense_Mutation	6	170155510	T	G	64	56
BRCA	TCGA-AO-A0JB	BTN3A3	SNP	Missense_Mutation	6	26443819	C	A	30	50
BRCA	TCGA-AO-A0JB	TNXB	SNP	Silent	6	32029331	G	A	48	63
BRCA	TCGA-AO-A0JB	KCNK5	SNP	Missense_Mutation	6	39162506	G	C	42	77
BRCA	TCGA-AO-A0JB	HTR1B	DEL	Frame_Shift_Del	6	78172741	G	-	37	83
BRCA	TCGA-AO-A0JB	HECW1	SNP	Silent	7	43590049	G	A	39	39
BRCA	TCGA-AO-A0JB	AEBP1	SNP	Missense_Mutation	7	44150599	C	A	20	77
BRCA	TCGA-AO-A0JB	CCDC132	DEL	Frame_Shift_Del	7	92952973	ATTC	-	16	68
BRCA	TCGA-AO-A0JB	CSMD3	SNP	Missense_Mutation	8	113702256	C	A	29	100
BRCA	TCGA-AO-A0JB	USP17L2	INS	Frame_Shift_Ins	8	11996135	-	G	7	54
BRCA	TCGA-AO-A0JB	ATAD2	SNP	Silent	8	124351573	A	C	11	53
BRCA	TCGA-AO-A0JB	EPB41L4B	SNP	Missense_Mutation	9	111938882	G	A	41	81
BRCA	TCGA-AO-A0JB	TLR4	SNP	Missense_Mutation	9	120475992	A	G	6	71
BRCA	TCGA-AO-A0JB	PRRC2B	SNP	Missense_Mutation	9	134343003	C	T	18	60
BRCA	TCGA-AO-A0JB	TUBB4B	SNP	Missense_Mutation	9	140137915	G	A	45	85
BRCA	TCGA-AO-A0JB	ANKRD20A2	DEL	Frame_Shift_Del	9	42410305	AA	-	5	64
BRCA	TCGA-AO-A0JC	MST1P9	SNP	Missense_Mutation	1	17086155	C	A	26	52
BRCA	TCGA-AO-A0JC	FAAH	SNP	Silent	1	46871356	C	T	31	46
BRCA	TCGA-AO-A0JC	DLG5	SNP	Silent	10	79593779	C	T	29	58
BRCA	TCGA-AO-A0JC	SCGB1C1	SNP	Missense_Mutation	11	193146	G	A	46	60
BRCA	TCGA-AO-A0JC	TMEM117	SNP	Missense_Mutation	12	44238710	C	A	32	69
BRCA	TCGA-AO-A0JC	CDH24	SNP	Missense_Mutation	14	23518908	C	G	21	71
BRCA	TCGA-AO-A0JC	MKRN3	SNP	Silent	15	23811712	C	T	30	54
BRCA	TCGA-AO-A0JC	RPL3L	SNP	Silent	16	2000884	C	T	32	58
BRCA	TCGA-AO-A0JC	AARS	SNP	Missense_Mutation	16	70292941	G	C	41	71
BRCA	TCGA-AO-A0JC	B3GNT3	SNP	Silent	19	17922586	G	A	45	57
BRCA	TCGA-AO-A0JC	ERCC2	SNP	Splice_site	19	45856502	C	G	30	83
BRCA	TCGA-AO-A0JC	ERCC2	SNP	Silent	19	45856512	C	T	32	59
BRCA	TCGA-AO-A0JC	SYT3	SNP	Missense_Mutation	19	51132727	G	T	45	80
BRCA	TCGA-AO-A0JC	ZNF280C	SNP	Missense_Mutation	23	129377634	C	G	32	44
BRCA	TCGA-AO-A0JC	TRIML1	SNP	Silent	4	189061102	G	A	35	60
BRCA	TCGA-AO-A0JC	TERT	SNP	Silent	5	1282594	G	C	33	50
BRCA	TCGA-AO-A0JC	CREBRF	SNP	Missense_Mutation	5	172537628	G	C	35	57
BRCA	TCGA-AO-A0JC	GPR98	SNP	Missense_Mutation	5	89979505	G	C	45	78
BRCA	TCGA-AO-A0JC	ABCA1	INS	Splice_Site	9	107556793	-	AAA	53	92
BRCA	TCGA-AO-A0JD	FLG	SNP	Missense_Mutation	1	152279089	C	A	28	41
BRCA	TCGA-AO-A0JD	FLG	SNP	Missense_Mutation	1	152281708	T	C	59	47
BRCA	TCGA-AO-A0JD	AQP10	SNP	Missense_Mutation	1	154295794	C	A	30	97
BRCA	TCGA-AO-A0JD	KIAA1614	SNP	Missense_Mutation	1	180905471	C	A	18	77
BRCA	TCGA-AO-A0JD	GLT25D2	SNP	Missense_Mutation	1	183944313	G	T	47	100
BRCA	TCGA-AO-A0JD	KCNK2	SNP	Missense_Mutation	1	215259971	A	G	8	57
BRCA	TCGA-AO-A0JD	OR14A16	SNP	Missense_Mutation	1	247978926	C	A	25	59
BRCA	TCGA-AO-A0JD	OR2L2	SNP	Missense_Mutation	1	248201996	A	G	12	66
BRCA	TCGA-AO-A0JD	OR2L2	SNP	Nonsense_Mutation	1	248202362	C	T	27	50
BRCA	TCGA-AO-A0JD	KIAA1462	SNP	Missense_Mutation	10	30316733	T	A	56	43
BRCA	TCGA-AO-A0JD	TACR2	SNP	Missense_Mutation	10	71174803	A	T	7	79
BRCA	TCGA-AO-A0JD	CNTN5	SNP	Silent	11	100211931	T	A	60	42
BRCA	TCGA-AO-A0JD	ATG13	SNP	Nonsense_Mutation	11	46686403	C	A	29	67
BRCA	TCGA-AO-A0JD	C11orf24	SNP	Silent	11	68029197	C	G	25	53
BRCA	TCGA-AO-A0JD	USP35	SNP	Missense_Mutation	11	77921182	G	A	40	75
BRCA	TCGA-AO-A0JD	FAT3	SNP	Nonsense_Mutation	11	92087136	G	T	45	85
BRCA	TCGA-AO-A0JD	MYBPC1	SNP	Missense_Mutation	12	102074250	T	A	55	92
BRCA	TCGA-AO-A0JD	WSCD2	SNP	Missense_Mutation	12	108589649	C	T	23	49
BRCA	TCGA-AO-A0JD	WSCD2	SNP	Missense_Mutation	12	108589656	C	A	24	96
BRCA	TCGA-AO-A0JD	SSH1	SNP	Silent	12	109181920	C	A	19	32
BRCA	TCGA-AO-A0JD	UNG	SNP	Missense_Mutation	12	109536289	C	A	22	69
BRCA	TCGA-AO-A0JD	FGF6	SNP	Silent	12	4554431	G	C	39	51
BRCA	TCGA-AO-A0JD	TUBA1C	SNP	Missense_Mutation	12	49663336	A	T	7	86
BRCA	TCGA-AO-A0JD	KCNA1	SNP	Missense_Mutation	12	5021221	C	T	19	97
BRCA	TCGA-AO-A0JD	PAN2	SNP	Missense_Mutation	12	56720592	C	A	30	98
BRCA	TCGA-AO-A0JD	MYO16	SNP	Silent	13	109672250	C	T	19	39
BRCA	TCGA-AO-A0JD	COL4A1	SNP	Missense_Mutation	13	110822920	C	T	30	94
BRCA	TCGA-AO-A0JD	PRHOXNB	SNP	Silent	13	28562661	G	A	33	65
BRCA	TCGA-AO-A0JD	ESD	SNP	Missense_Mutation	13	47354159	C	G	28	100
BRCA	TCGA-AO-A0JD	RNF219	SNP	Missense_Mutation	13	79209283	T	G	57	56
BRCA	TCGA-AO-A0JD	SLITRK5	SNP	Silent	13	88328771	C	T	23	48
BRCA	TCGA-AO-A0JD	AKAP13	SNP	Missense_Mutation	15	86122377	G	A	36	49
BRCA	TCGA-AO-A0JD	RCCD1	SNP	Missense_Mutation	15	91504977	C	T	28	69
BRCA	TCGA-AO-A0JD	ZNF598	SNP	Missense_Mutation	16	2048361	C	A	30	93
BRCA	TCGA-AO-A0JD	PRSS22	SNP	Missense_Mutation	16	2903883	C	G	30	42
BRCA	TCGA-AO-A0JD	PRSS36	SNP	Missense_Mutation	16	31155122	C	T	23	64
BRCA	TCGA-AO-A0JD	CHD9	SNP	Missense_Mutation	16	53191289	C	G	29	61
BRCA	TCGA-AO-A0JD	KCNG4	SNP	Missense_Mutation	16	84271027	G	A	35	86
BRCA	TCGA-AO-A0JD	KRTAP1-5	SNP	Missense_Mutation	17	39182972	G	C	36	57
BRCA	TCGA-AO-A0JD	NOL11	SNP	Missense_Mutation	17	65734083	C	G	32	65
BRCA	TCGA-AO-A0JD	NOL11	SNP	Missense_Mutation	17	65734254	C	T	32	66
BRCA	TCGA-AO-A0JD	WIPI1	SNP	Missense_Mutation	17	66426165	C	T	23	97
BRCA	TCGA-AO-A0JD	KIAA0195	SNP	Nonsense_Mutation	17	73485372	C	T	23	76
BRCA	TCGA-AO-A0JD	ITGB4	SNP	Missense_Mutation	17	73736913	C	G	28	51
BRCA	TCGA-AO-A0JD	GALR2	SNP	Missense_Mutation	17	74073151	G	T	38	59
BRCA	TCGA-AO-A0JD	TP53	SNP	Missense_Mutation	17	7578271	T	A	51	76
BRCA	TCGA-AO-A0JD	ZNF532	SNP	Silent	18	56586092	G	T	40	43
BRCA	TCGA-AO-A0JD	BEST2	INS	Frame_Shift_Ins	19	12868799	-	T	26	59
BRCA	TCGA-AO-A0JD	PGLYRP2	SNP	Silent	19	15587331	A	T	3	41
BRCA	TCGA-AO-A0JD	ZNF208	SNP	Missense_Mutation	19	22156700	T	C	56	26
BRCA	TCGA-AO-A0JD	ZNF585B	SNP	Splice_site	19	37681051	C	T	30	48
BRCA	TCGA-AO-A0JD	FBXO27	SNP	Missense_Mutation	19	39516146	A	C	1	58
BRCA	TCGA-AO-A0JD	CYP2A13	SNP	Missense_Mutation	19	41600885	C	A	28	68
BRCA	TCGA-AO-A0JD	ATP1A3	SNP	Missense_Mutation	19	42482824	C	T	31	77
BRCA	TCGA-AO-A0JD	ZNF229	SNP	Missense_Mutation	19	44933197	G	A	35	52
BRCA	TCGA-AO-A0JD	BCL3	SNP	Missense_Mutation	19	45259541	G	T	44	51
BRCA	TCGA-AO-A0JD	C19orf10	SNP	Missense_Mutation	19	4668614	G	T	44	81
BRCA	TCGA-AO-A0JD	VRK3	SNP	Splice_Site	19	50510825	C	A	18	62
BRCA	TCGA-AO-A0JD	ETFB	SNP	Silent	19	51857488	G	A	37	51
BRCA	TCGA-AO-A0JD	KIR2DS4	SNP	Silent	19	55351148	G	A	40	59
BRCA	TCGA-AO-A0JD	REV1	SNP	Missense_Mutation	2	100019354	G	C	35	70
BRCA	TCGA-AO-A0JD	MERTK	SNP	Nonsense_Mutation	2	112779075	C	T	21	100
BRCA	TCGA-AO-A0JD	SSB	SNP	Silent	2	170663549	G	A	36	51
BRCA	TCGA-AO-A0JD	MPP4	SNP	Missense_Mutation	2	202512439	T	A	58	76
BRCA	TCGA-AO-A0JD	SPEG	SNP	Silent	2	220355614	C	A	22	55
BRCA	TCGA-AO-A0JD	COL4A4	SNP	Silent	2	227872836	G	A	38	40
BRCA	TCGA-AO-A0JD	SPHKAP	SNP	Nonsense_Mutation	2	228884271	A	T	4	56
BRCA	TCGA-AO-A0JD	THNSL2	SNP	Missense_Mutation	2	88474185	T	C	62	89
BRCA	TCGA-AO-A0JD	WFDC8	SNP	Missense_Mutation	20	44180679	C	G	30	45
BRCA	TCGA-AO-A0JD	PROKR2	SNP	Silent	20	5294674	G	A	40	44
BRCA	TCGA-AO-A0JD	PCK1	SNP	Missense_Mutation	20	56138123	C	A	19	100
BRCA	TCGA-AO-A0JD	FERMT1	SNP	Missense_Mutation	20	6088271	A	G	11	92
BRCA	TCGA-AO-A0JD	KRTAP10-9	SNP	Missense_Mutation	21	46047456	A	C	7	52
BRCA	TCGA-AO-A0JD	PRAME	SNP	Missense_Mutation	22	22890679	C	T	20	56
BRCA	TCGA-AO-A0JD	MLC1	SNP	Missense_Mutation	22	50518384	A	G	1	86
BRCA	TCGA-AO-A0JD	DOCK11	SNP	Splice_Site	23	117758501	G	A	33	93
BRCA	TCGA-AO-A0JD	UPF3B	SNP	Missense_Mutation	23	118971887	G	A	38	78
BRCA	TCGA-AO-A0JD	MAGEA10	SNP	Missense_Mutation	23	151303066	C	T	30	53
BRCA	TCGA-AO-A0JD	PNMA5	SNP	Missense_Mutation	23	152159875	C	T	30	53
BRCA	TCGA-AO-A0JD	MECP2	SNP	Missense_Mutation	23	153295952	C	G	27	52
BRCA	TCGA-AO-A0JD	BCOR	SNP	Missense_Mutation	23	39933528	G	T	41	57
BRCA	TCGA-AO-A0JD	USP9X	SNP	Missense_Mutation	23	41043260	C	T	19	81
BRCA	TCGA-AO-A0JD	ATP7A	INS	In_Frame_Ins	23	77268498	-	CTA	62	52
BRCA	TCGA-AO-A0JD	SIDT1	SNP	Missense_Mutation	3	113345058	T	G	62	83
BRCA	TCGA-AO-A0JD	GRAMD1C	SNP	Missense_Mutation	3	113595081	A	T	16	88
BRCA	TCGA-AO-A0JD	EPHB1	SNP	Missense_Mutation	3	134885809	G	A	48	100
BRCA	TCGA-AO-A0JD	VPS8	SNP	Missense_Mutation	3	184566859	A	T	12	92
BRCA	TCGA-AO-A0JD	RNF123	SNP	Missense_Mutation	3	49757963	G	A	36	88
BRCA	TCGA-AO-A0JD	USP53	SNP	Missense_Mutation	4	120192520	A	G	8	54
BRCA	TCGA-AO-A0JD	LRAT	SNP	Silent	4	155665892	C	T	19	49
BRCA	TCGA-AO-A0JD	PCDHB5	SNP	Silent	5	140516843	G	A	39	47
BRCA	TCGA-AO-A0JD	DCTN4	SNP	Missense_Mutation	5	150110686	T	G	56	60
BRCA	TCGA-AO-A0JD	ZFR	SNP	Nonsense_Mutation	5	32390509	C	A	30	96
BRCA	TCGA-AO-A0JD	SEMA5A	SNP	Nonsense_Mutation	5	9066543	G	T	34	75
BRCA	TCGA-AO-A0JD	KIAA0408	SNP	Nonstop_Mutation	6	127765377	A	G	15	49
BRCA	TCGA-AO-A0JD	NUP153	SNP	Silent	6	17629106	T	C	56	51
BRCA	TCGA-AO-A0JD	VARS	SNP	Splice_site	6	31759746	C	A	17	61
BRCA	TCGA-AO-A0JD	ZNF76	SNP	Splice_Site	6	35258417	G	A	35	99
BRCA	TCGA-AO-A0JD	DAAM2	SNP	Silent	6	39869125	G	A	34	71
BRCA	TCGA-AO-A0JD	KLC4	SNP	Missense_Mutation	6	43039931	C	T	27	88
BRCA	TCGA-AO-A0JD	EYS	DEL	Frame_Shift_Del	6	66205226	C	-	26	52
BRCA	TCGA-AO-A0JD	DSP	SNP	Missense_Mutation	6	7576652	A	T	12	77
BRCA	TCGA-AO-A0JD	DPP6	SNP	Silent	7	154664350	A	C	14	67
BRCA	TCGA-AO-A0JD	CHST12	SNP	Silent	7	2473033	C	T	23	32
BRCA	TCGA-AO-A0JD	ZNF804B	SNP	Missense_Mutation	7	88963433	G	T	41	56
BRCA	TCGA-AO-A0JD	TRRAP	SNP	Missense_Mutation	7	98579427	G	C	35	51
BRCA	TCGA-AO-A0JD	RNF19A	SNP	Missense_Mutation	8	101273937	C	G	24	51
BRCA	TCGA-AO-A0JD	XKR6	SNP	Silent	8	10755617	T	G	56	88
BRCA	TCGA-AO-A0JD	PCM1	SNP	Splice_site	8	17872349	T	G	51	54
BRCA	TCGA-AO-A0JD	CHRNA6	SNP	Missense_Mutation	8	42611543	C	A	30	100
BRCA	TCGA-AO-A0JD	FAM92A1	SNP	Missense_Mutation	8	94738722	G	T	48	63
BRCA	TCGA-AO-A0JD	MSANTD3-TMEFF1	SNP	Silent	9	103334854	C	G	32	56
BRCA	TCGA-AO-A0JD	NDOR1	SNP	Missense_Mutation	9	140109063	C	T	31	54
BRCA	TCGA-AO-A0JE	UBL4B	SNP	Missense_Mutation	1	110655404	A	C	6	36
BRCA	TCGA-AO-A0JE	PGLYRP3	SNP	Missense_Mutation	1	153274985	C	T	27	56
BRCA	TCGA-AO-A0JE	FCER1A	SNP	Missense_Mutation	1	159277697	C	T	24	48
BRCA	TCGA-AO-A0JE	DCAF8	SNP	Missense_Mutation	1	160251960	T	C	63	73
BRCA	TCGA-AO-A0JE	LYST	SNP	Missense_Mutation	1	235973301	C	T	19	50
BRCA	TCGA-AO-A0JE	PLD5	SNP	Missense_Mutation	1	242253277	G	A	39	55
BRCA	TCGA-AO-A0JE	OR2G6	SNP	Missense_Mutation	1	248685560	G	A	36	50
BRCA	TCGA-AO-A0JE	SESN2	SNP	Silent	1	28599955	C	A	22	57
BRCA	TCGA-AO-A0JE	MMP13	SNP	Silent	11	102822757	C	A	30	50
BRCA	TCGA-AO-A0JE	TRIM5	SNP	Silent	11	5686165	G	A	45	51
BRCA	TCGA-AO-A0JE	C11orf30	SNP	Missense_Mutation	11	76227289	C	G	29	67
BRCA	TCGA-AO-A0JE	CIT	SNP	Missense_Mutation	12	120152115	C	T	27	100
BRCA	TCGA-AO-A0JE	POLE	SNP	Missense_Mutation	12	133226445	G	T	41	75
BRCA	TCGA-AO-A0JE	OSBPL8	SNP	Missense_Mutation	12	76778063	C	A	18	100
BRCA	TCGA-AO-A0JE	IRF9	SNP	Nonsense_Mutation	14	24633978	C	T	25	60
BRCA	TCGA-AO-A0JE	UNC79	SNP	Missense_Mutation	14	94060170	G	A	45	67
BRCA	TCGA-AO-A0JE	BLM	SNP	Missense_Mutation	15	91346773	G	T	36	80
BRCA	TCGA-AO-A0JE	KIAA0430	INS	Frame_Shift_Ins	16	15696474	-	G	11	51
BRCA	TCGA-AO-A0JE	SLC6A4	SNP	Silent	17	28545924	G	A	45	75
BRCA	TCGA-AO-A0JE	PLXDC1	SNP	Silent	17	37226190	G	T	41	52
BRCA	TCGA-AO-A0JE	TP53	SNP	Missense_Mutation	17	7578190	T	C	49	88
BRCA	TCGA-AO-A0JE	MIB1	SNP	Missense_Mutation	18	19348649	G	C	33	99
BRCA	TCGA-AO-A0JE	PPP2R1A	SNP	Splice_site	19	52729060	T	G	55	54
BRCA	TCGA-AO-A0JE	ZNF587	SNP	Missense_Mutation	19	58370864	C	T	31	52
BRCA	TCGA-AO-A0JE	LRP2	SNP	Missense_Mutation	2	170060576	T	C	63	66
BRCA	TCGA-AO-A0JE	TTN	SNP	Missense_Mutation	2	179466427	T	C	61	90
BRCA	TCGA-AO-A0JE	NT5C1B-RDH14	SNP	Missense_Mutation	2	18765887	C	T	31	66
BRCA	TCGA-AO-A0JE	MYT1L	SNP	Missense_Mutation	2	1891341	C	G	32	97
BRCA	TCGA-AO-A0JE	SLC39A10	SNP	Splice_Site	2	196578278	G	T	44	77
BRCA	TCGA-AO-A0JE	SNAP25	SNP	Missense_Mutation	20	10277623	G	C	41	100
BRCA	TCGA-AO-A0JE	WFDC5	SNP	Missense_Mutation	20	43739335	G	A	43	76
BRCA	TCGA-AO-A0JE	DOPEY2	SNP	Silent	21	37617884	C	T	30	39
BRCA	TCGA-AO-A0JE	GAS2L1	SNP	Silent	22	29707827	G	A	43	56
BRCA	TCGA-AO-A0JE	MORC4	SNP	Silent	23	106205310	G	T	45	49
BRCA	TCGA-AO-A0JE	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-AO-A0JE	ZNF620	SNP	Nonsense_Mutation	3	40557522	C	G	29	53
BRCA	TCGA-AO-A0JE	MAGI1	SNP	Silent	3	65361490	G	C	43	58
BRCA	TCGA-AO-A0JE	DNAH5	SNP	Missense_Mutation	5	13862717	G	A	37	99
BRCA	TCGA-AO-A0JE	ATP6V0E1	SNP	Missense_Mutation	5	172410873	C	G	29	50
BRCA	TCGA-AO-A0JE	DSE	SNP	Missense_Mutation	6	116757429	G	C	33	89
BRCA	TCGA-AO-A0JE	BTN1A1	SNP	Missense_Mutation	6	26509153	C	G	32	54
BRCA	TCGA-AO-A0JE	TREML1	SNP	Missense_Mutation	6	41121613	G	T	34	60
BRCA	TCGA-AO-A0JE	DEFB112	SNP	Silent	6	50016314	T	C	63	47
BRCA	TCGA-AO-A0JE	C6orf165	SNP	Missense_Mutation	6	88136307	G	C	41	72
BRCA	TCGA-AO-A0JE	LRGUK	SNP	Missense_Mutation	7	133906651	C	T	29	66
BRCA	TCGA-AO-A0JE	MLL3	SNP	Nonsense_Mutation	7	151919733	C	A	29	100
BRCA	TCGA-AO-A0JE	ZHX2	SNP	Silent	8	123964821	G	A	45	52
BRCA	TCGA-AO-A0JE	ZNF572	SNP	Missense_Mutation	8	125989495	C	G	29	52
BRCA	TCGA-AO-A0JE	SQLE	SNP	Silent	8	126021464	G	C	37	35
BRCA	TCGA-AO-A0JF	TCHH	SNP	Silent	1	152082576	C	T	32	67
BRCA	TCGA-AO-A0JF	PMVK	SNP	Missense_Mutation	1	154898884	G	A	39	78
BRCA	TCGA-AO-A0JF	EPHX1	SNP	Missense_Mutation	1	226026417	C	T	26	72
BRCA	TCGA-AO-A0JF	ZNF692	SNP	Silent	1	249151656	C	T	25	54
BRCA	TCGA-AO-A0JF	DYDC2	DEL	In_Frame_Del	10	82126466	CCACGA	-	30	74
BRCA	TCGA-AO-A0JF	RNF169	SNP	Missense_Mutation	11	74546883	G	A	38	95
BRCA	TCGA-AO-A0JF	ASUN	SNP	Missense_Mutation	12	27069033	T	C	50	94
BRCA	TCGA-AO-A0JF	HAL	SNP	Missense_Mutation	12	96380925	C	G	20	65
BRCA	TCGA-AO-A0JF	MAP2K4	SNP	Missense_Mutation	17	12044530	C	G	24	76
BRCA	TCGA-AO-A0JF	TNS4	SNP	Silent	17	38643408	G	T	38	49
BRCA	TCGA-AO-A0JF	FAM136A	SNP	Silent	2	70524439	G	A	33	50
BRCA	TCGA-AO-A0JF	ETS2	SNP	Missense_Mutation	21	40186843	T	C	55	91
BRCA	TCGA-AO-A0JF	CABIN1	SNP	Silent	22	24480534	G	A	47	69
BRCA	TCGA-AO-A0JF	MAGED2	INS	Frame_Shift_Ins	23	54841196	-	T	36	51
BRCA	TCGA-AO-A0JF	PIK3CA	SNP	Missense_Mutation	3	178928079	G	A	33	98
BRCA	TCGA-AO-A0JF	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-AO-A0JF	RNF14	INS	In_Frame_Ins	5	141359713	-	AGG	61	77
BRCA	TCGA-AO-A0JF	MAP3K1	DEL	Frame_Shift_Del	5	56161191	T	-	52	86
BRCA	TCGA-AO-A0JF	MAP3K1	SNP	Splice_site	5	56183347	G	A	35	94
BRCA	TCGA-AO-A0JF	EDN1	SNP	Missense_Mutation	6	12296218	T	A	58	79
BRCA	TCGA-AO-A0JF	PKHD1	SNP	Silent	6	51944778	G	A	33	46
BRCA	TCGA-AO-A0JF	ZNF292	SNP	Missense_Mutation	6	87967879	A	G	8	60
BRCA	TCGA-AO-A0JF	ABCF2	SNP	Silent	7	150921061	C	T	22	60
BRCA	TCGA-AO-A0JF	MLL3	DEL	Frame_Shift_Del	7	151945622	C	-	29	57
BRCA	TCGA-AO-A0JF	PEX2	SNP	Missense_Mutation	8	77895511	C	T	20	57
BRCA	TCGA-AO-A0JF	NECAB1	SNP	Silent	8	91962098	T	C	57	49
BRCA	TCGA-AO-A0JG	OXCT2	SNP	Missense_Mutation	1	40235514	C	A	19	62
BRCA	TCGA-AO-A0JG	LRRC7	SNP	Missense_Mutation	1	70505003	T	C	60	76
BRCA	TCGA-AO-A0JG	GATA3	INS	Frame_Shift_Ins	10	8115930	-	C	50	89
BRCA	TCGA-AO-A0JG	DSCAML1	DEL	Frame_Shift_Del	11	117391869	C	-	30	99
BRCA	TCGA-AO-A0JG	QSER1	SNP	Missense_Mutation	11	32953798	G	A	42	75
BRCA	TCGA-AO-A0JG	C14orf101	SNP	Missense_Mutation	14	57051723	A	T	2	66
BRCA	TCGA-AO-A0JG	BCMO1	SNP	Missense_Mutation	16	81295772	G	C	37	97
BRCA	TCGA-AO-A0JG	FLII	DEL	Frame_Shift_Del	17	18155034	C	-	26	100
BRCA	TCGA-AO-A0JG	SLC13A2	SNP	Missense_Mutation	17	26820713	C	A	24	52
BRCA	TCGA-AO-A0JG	UBE2Z	SNP	Missense_Mutation	17	46988234	A	G	8	89
BRCA	TCGA-AO-A0JG	NAGK	SNP	Missense_Mutation	2	71303763	T	C	53	51
BRCA	TCGA-AO-A0JG	CTCFL	SNP	Silent	20	56087795	G	C	46	50
BRCA	TCGA-AO-A0JG	CT47B1	SNP	Missense_Mutation	23	120008768	C	T	30	47
BRCA	TCGA-AO-A0JG	MAP3K13	DEL	Frame_Shift_Del	3	185198098	G	-	35	56
BRCA	TCGA-AO-A0JG	CLCN3	SNP	Missense_Mutation	4	170628374	A	T	12	62
BRCA	TCGA-AO-A0JG	SRP72	SNP	Missense_Mutation	4	57333838	G	A	46	71
BRCA	TCGA-AO-A0JG	PIK3R1	SNP	Missense_Mutation	5	67589230	C	A	18	78
BRCA	TCGA-AO-A0JG	RANBP9	SNP	Missense_Mutation	6	13659036	C	G	24	100
BRCA	TCGA-AO-A0JG	KLC4	DEL	Frame_Shift_Del	6	43034120	C	-	18	97
BRCA	TCGA-AO-A0JG	EPHA7	SNP	Translation_Start_Site	6	94129274	G	T	33	70
BRCA	TCGA-AO-A0JG	PRRT4	SNP	Missense_Mutation	7	127991340	G	C	35	75
BRCA	TCGA-AO-A0JG	MLL3	SNP	Missense_Mutation	7	151948034	C	T	30	84
BRCA	TCGA-AO-A0JI	PCNXL2	DEL	Splice_Site	1	233136049	A	-	14	80
BRCA	TCGA-AO-A0JI	OR2G3	SNP	Missense_Mutation	1	247769321	C	T	25	50
BRCA	TCGA-AO-A0JI	OR2T33	SNP	Missense_Mutation	1	248436408	C	A	25	50
BRCA	TCGA-AO-A0JI	MCMBP	SNP	Missense_Mutation	10	121591584	C	T	23	100
BRCA	TCGA-AO-A0JI	SYNPO2L	SNP	Missense_Mutation	10	75408227	G	A	38	59
BRCA	TCGA-AO-A0JI	NUMA1	SNP	Missense_Mutation	11	71715744	G	T	44	66
BRCA	TCGA-AO-A0JI	NUMA1	SNP	Missense_Mutation	11	71715762	T	C	54	69
BRCA	TCGA-AO-A0JI	RPL13AP20	SNP	Silent	12	13028844	C	T	32	77
BRCA	TCGA-AO-A0JI	OVCH1	SNP	Nonsense_Mutation	12	29604408	C	T	22	67
BRCA	TCGA-AO-A0JI	WNK1	DEL	In_Frame_Del	12	977684	CACCTATCAGTA	-	25	74
BRCA	TCGA-AO-A0JI	CRABP1	SNP	Missense_Mutation	15	78633419	G	C	39	38
BRCA	TCGA-AO-A0JI	CDH11	SNP	Missense_Mutation	16	65032486	C	T	19	95
BRCA	TCGA-AO-A0JI	GSPT2	SNP	Missense_Mutation	23	51488353	A	C	6	82
BRCA	TCGA-AO-A0JI	COL7A1	SNP	Silent	3	48609590	G	A	44	51
BRCA	TCGA-AO-A0JI	PRICKLE2	SNP	Missense_Mutation	3	64133064	C	T	31	100
BRCA	TCGA-AO-A0JI	SLC4A4	SNP	Splice_site	4	72429510	T	C	58	89
BRCA	TCGA-AO-A0JI	NIM1	SNP	Missense_Mutation	5	43277278	G	A	37	100
BRCA	TCGA-AO-A0JI	SLC45A4	SNP	Silent	8	142228731	G	A	40	41
BRCA	TCGA-AO-A0JI	PTAR1	SNP	Missense_Mutation	9	72338284	A	C	3	94
BRCA	TCGA-AO-A0JJ	SYPL2	SNP	Missense_Mutation	1	110020512	G	A	37	100
BRCA	TCGA-AO-A0JJ	C10orf71	SNP	Silent	10	50532174	A	G	11	44
BRCA	TCGA-AO-A0JJ	SERPINA4	SNP	Missense_Mutation	14	95030303	G	A	40	51
BRCA	TCGA-AO-A0JJ	UNC13C	SNP	Nonsense_Mutation	15	54825146	C	T	17	90
BRCA	TCGA-AO-A0JJ	CDH1	DEL	Frame_Shift_Del	16	68846121	AGTCACT	-	7	17
BRCA	TCGA-AO-A0JJ	CENPBD1	SNP	Missense_Mutation	16	90038155	T	G	50	62
BRCA	TCGA-AO-A0JJ	DNASE2	SNP	Missense_Mutation	19	12989624	C	A	22	56
BRCA	TCGA-AO-A0JJ	CPT1C	SNP	Splice_site	19	50208555	G	T	35	80
BRCA	TCGA-AO-A0JJ	MERTK	SNP	Silent	2	112786351	C	T	22	49
BRCA	TCGA-AO-A0JJ	ACTG2	SNP	Missense_Mutation	2	74146651	G	T	34	56
BRCA	TCGA-AO-A0JJ	SRXN1	SNP	Missense_Mutation	20	629434	A	T	12	84
BRCA	TCGA-AO-A0JJ	NCF4	SNP	Missense_Mutation	22	37273825	C	T	19	85
BRCA	TCGA-AO-A0JJ	TAF1	SNP	Silent	23	70678132	T	A	54	51
BRCA	TCGA-AO-A0JJ	STK32B	SNP	Splice_site	4	5399971	G	A	39	72
BRCA	TCGA-AO-A0JJ	ERBB2IP	SNP	Missense_Mutation	5	65370946	A	T	8	89
BRCA	TCGA-AO-A0JJ	MED23	DEL	Frame_Shift_Del	6	131914256	CTCATTGAATCTC	-	20	72
BRCA	TCGA-AO-A0JJ	BTN2A3	SNP	Missense_Mutation	6	26431261	G	T	33	55
BRCA	TCGA-AO-A0JJ	ACTB	SNP	Missense_Mutation	7	5567503	C	G	27	86
BRCA	TCGA-AO-A0JJ	ZNF655	DEL	Frame_Shift_Del	7	99161497	CGCCTTCCCA	-	23	66
BRCA	TCGA-AO-A0JJ	KCNT1	SNP	Missense_Mutation	9	138662242	G	A	38	62
BRCA	TCGA-AO-A0JL	SYT11	SNP	Missense_Mutation	1	155838473	G	A	38	100
BRCA	TCGA-AO-A0JL	CCT3	SNP	Missense_Mutation	1	156280863	T	G	63	76
BRCA	TCGA-AO-A0JL	CCT3	SNP	Nonsense_Mutation	1	156280869	T	A	64	76
BRCA	TCGA-AO-A0JL	IFI16	SNP	Missense_Mutation	1	158984681	G	T	33	51
BRCA	TCGA-AO-A0JL	DUSP27	SNP	Missense_Mutation	1	167088559	G	A	39	86
BRCA	TCGA-AO-A0JL	PIGR	SNP	Missense_Mutation	1	207107989	T	C	57	52
BRCA	TCGA-AO-A0JL	PGBD5	DEL	Frame_Shift_Del	1	230503753	CCACG	-	22	52
BRCA	TCGA-AO-A0JL	CCDC27	SNP	Missense_Mutation	1	3670779	C	T	18	59
BRCA	TCGA-AO-A0JL	HPDL	SNP	Missense_Mutation	1	45793452	G	T	41	85
BRCA	TCGA-AO-A0JL	FAM196A	SNP	Missense_Mutation	10	128973678	G	C	43	49
BRCA	TCGA-AO-A0JL	OPN4	SNP	Missense_Mutation	10	88418373	G	T	40	63
BRCA	TCGA-AO-A0JL	ENTPD1	SNP	Missense_Mutation	10	97626096	C	T	28	36
BRCA	TCGA-AO-A0JL	BTG4	SNP	Silent	11	111367981	T	C	60	53
BRCA	TCGA-AO-A0JL	OR5I1	SNP	Missense_Mutation	11	55703345	G	A	45	63
BRCA	TCGA-AO-A0JL	DPP3	SNP	Missense_Mutation	11	66259056	C	T	30	96
BRCA	TCGA-AO-A0JL	PDE1B	SNP	Missense_Mutation	12	54967460	A	G	3	88
BRCA	TCGA-AO-A0JL	IKZF4	SNP	Missense_Mutation	12	56428812	T	G	63	58
BRCA	TCGA-AO-A0JL	INHBC	SNP	Nonsense_Mutation	12	57843320	C	T	21	72
BRCA	TCGA-AO-A0JL	NAV3	SNP	Missense_Mutation	12	78570996	G	A	33	100
BRCA	TCGA-AO-A0JL	RBM23	SNP	Missense_Mutation	14	23374660	T	C	54	67
BRCA	TCGA-AO-A0JL	TRIP11	SNP	Missense_Mutation	14	92472173	A	G	8	59
BRCA	TCGA-AO-A0JL	CIITA	SNP	Missense_Mutation	16	10995394	G	C	33	68
BRCA	TCGA-AO-A0JL	IFT140	SNP	Missense_Mutation	16	1633329	G	A	38	48
BRCA	TCGA-AO-A0JL	HS3ST2	SNP	Silent	16	22926832	G	A	40	50
BRCA	TCGA-AO-A0JL	SEZ6L2	SNP	Silent	16	29899946	C	G	23	45
BRCA	TCGA-AO-A0JL	CDH11	SNP	Missense_Mutation	16	64984859	G	A	35	73
BRCA	TCGA-AO-A0JL	PRMT7	SNP	Missense_Mutation	16	68387405	G	A	39	79
BRCA	TCGA-AO-A0JL	MTSS1L	SNP	Missense_Mutation	16	70708357	C	G	20	71
BRCA	TCGA-AO-A0JL	SHPK	SNP	Missense_Mutation	17	3514195	G	C	35	73
BRCA	TCGA-AO-A0JL	GP1BA	SNP	Silent	17	4837204	C	T	21	50
BRCA	TCGA-AO-A0JL	ABCA10	SNP	Silent	17	67181631	G	A	37	60
BRCA	TCGA-AO-A0JL	GLOD4	SNP	Missense_Mutation	17	685426	G	A	37	80
BRCA	TCGA-AO-A0JL	TP53	SNP	Nonsense_Mutation	17	7577022	G	A	38	61
BRCA	TCGA-AO-A0JL	CELF4	SNP	Missense_Mutation	18	34850769	G	A	38	94
BRCA	TCGA-AO-A0JL	POLI	SNP	Missense_Mutation	18	51797757	C	T	21	46
BRCA	TCGA-AO-A0JL	RTTN	SNP	Silent	18	67759382	A	G	3	36
BRCA	TCGA-AO-A0JL	HMHA1	SNP	Missense_Mutation	19	1079999	G	C	45	87
BRCA	TCGA-AO-A0JL	ZNF254	SNP	Missense_Mutation	19	24289416	A	G	3	31
BRCA	TCGA-AO-A0JL	MAP4K1	SNP	Missense_Mutation	19	39088168	C	T	30	61
BRCA	TCGA-AO-A0JL	ZNF419	SNP	Silent	19	58004585	G	A	34	50
BRCA	TCGA-AO-A0JL	ZNF550	SNP	Silent	19	58058369	G	A	33	57
BRCA	TCGA-AO-A0JL	BIN1	SNP	Silent	2	127806129	G	A	39	29
BRCA	TCGA-AO-A0JL	NCKAP5	SNP	Silent	2	133541246	G	A	47	45
BRCA	TCGA-AO-A0JL	RIF1	SNP	Missense_Mutation	2	152273161	A	G	12	61
BRCA	TCGA-AO-A0JL	CHD6	SNP	Silent	20	40081463	C	T	31	41
BRCA	TCGA-AO-A0JL	BRD1	DNP	Splice_site	22	50192208	CC	AT	30	99
BRCA	TCGA-AO-A0JL	IDS	SNP	Silent	23	148571918	G	T	37	35
BRCA	TCGA-AO-A0JL	KLF8	SNP	Missense_Mutation	23	56291989	G	T	34	87
BRCA	TCGA-AO-A0JL	CD80	SNP	Silent	3	119263560	G	A	39	38
BRCA	TCGA-AO-A0JL	TM4SF1	SNP	Missense_Mutation	3	149095219	G	C	41	60
BRCA	TCGA-AO-A0JL	ANKRD28	SNP	Missense_Mutation	3	15755061	A	G	3	92
BRCA	TCGA-AO-A0JL	NMD3	SNP	Missense_Mutation	3	160952568	G	T	36	71
BRCA	TCGA-AO-A0JL	SI	SNP	Splice_Site	3	164785127	C	T	17	89
BRCA	TCGA-AO-A0JL	FXR1	DEL	Frame_Shift_Del	3	180686028	CCTC	-	30	86
BRCA	TCGA-AO-A0JL	ZNF502	SNP	Missense_Mutation	3	44762851	G	C	33	55
BRCA	TCGA-AO-A0JL	NIPAL1	SNP	Missense_Mutation	4	48027169	T	A	59	49
BRCA	TCGA-AO-A0JL	WDFY3	SNP	Silent	4	85648059	C	T	32	58
BRCA	TCGA-AO-A0JL	EMB	SNP	Missense_Mutation	5	49695122	C	A	20	47
BRCA	TCGA-AO-A0JL	GRM1	SNP	Missense_Mutation	6	146755726	G	A	41	79
BRCA	TCGA-AO-A0JL	ARID1B	SNP	Missense_Mutation	6	157528561	G	T	48	100
BRCA	TCGA-AO-A0JL	HLA-G	SNP	Missense_Mutation	6	29797650	T	A	56	61
BRCA	TCGA-AO-A0JL	CAGE1	SNP	Missense_Mutation	6	7373460	A	G	16	46
BRCA	TCGA-AO-A0JL	PTPRZ1	SNP	Missense_Mutation	7	121612627	A	T	7	76
BRCA	TCGA-AO-A0JL	PARP12	SNP	Missense_Mutation	7	139724642	G	T	46	58
BRCA	TCGA-AO-A0JL	JHDM1D	SNP	Missense_Mutation	7	139796372	T	G	50	61
BRCA	TCGA-AO-A0JL	HGF	SNP	Missense_Mutation	7	81346551	G	A	37	77
BRCA	TCGA-AO-A0JL	MYC	SNP	Splice_site	8	128748840	C	G	28	55
BRCA	TCGA-AO-A0JL	ZNF658	SNP	Missense_Mutation	9	40774730	G	C	34	53
BRCA	TCGA-AO-A0JM	PTCHD2	SNP	Missense_Mutation	1	11561792	G	A	40	76
BRCA	TCGA-AO-A0JM	TCHHL1	SNP	Missense_Mutation	1	152057778	C	A	22	49
BRCA	TCGA-AO-A0JM	MDM4	SNP	Silent	1	204513770	T	G	55	53
BRCA	TCGA-AO-A0JM	DOCK7	SNP	Missense_Mutation	1	62979249	C	A	28	100
BRCA	TCGA-AO-A0JM	MTF2	SNP	Missense_Mutation	1	93594865	G	C	33	80
BRCA	TCGA-AO-A0JM	ACTA2	SNP	Missense_Mutation	10	90701048	C	T	31	100
BRCA	TCGA-AO-A0JM	ATM	SNP	Nonsense_Mutation	11	108235935	C	T	19	60
BRCA	TCGA-AO-A0JM	SNX6	SNP	Silent	14	35045013	G	C	45	56
BRCA	TCGA-AO-A0JM	SYNE2	SNP	Missense_Mutation	14	64428284	T	A	53	91
BRCA	TCGA-AO-A0JM	SRSF5	SNP	Missense_Mutation	14	70235927	C	T	31	77
BRCA	TCGA-AO-A0JM	SRCAP	SNP	Silent	16	30718895	G	A	47	49
BRCA	TCGA-AO-A0JM	PHLPP2	DEL	Frame_Shift_Del	16	71697861	CC	-	26	49
BRCA	TCGA-AO-A0JM	ADAMTS18	SNP	Missense_Mutation	16	77334207	T	A	49	86
BRCA	TCGA-AO-A0JM	CTU2	SNP	Silent	16	88780165	C	T	29	79
BRCA	TCGA-AO-A0JM	ANKRD11	SNP	Silent	16	89349983	G	A	39	29
BRCA	TCGA-AO-A0JM	GOSR1	SNP	Nonsense_Mutation	17	28817222	C	T	19	78
BRCA	TCGA-AO-A0JM	SLFN13	DNP	Missense_Mutation	17	33772617	TC	AA	62	64
BRCA	TCGA-AO-A0JM	CHST9	INS	Frame_Shift_Ins	18	24496830	-	A	57	60
BRCA	TCGA-AO-A0JM	FBXO27	SNP	Missense_Mutation	19	39517580	T	C	55	58
BRCA	TCGA-AO-A0JM	PLD3	SNP	Missense_Mutation	19	40882650	G	A	40	59
BRCA	TCGA-AO-A0JM	FSD1	SNP	Missense_Mutation	19	4311943	G	A	40	74
BRCA	TCGA-AO-A0JM	GTF3C3	SNP	Missense_Mutation	2	197662581	C	T	29	79
BRCA	TCGA-AO-A0JM	TTLL4	SNP	Missense_Mutation	2	219617532	G	A	39	74
BRCA	TCGA-AO-A0JM	WDR69	SNP	Silent	2	228769656	C	T	23	40
BRCA	TCGA-AO-A0JM	RASSF2	SNP	Silent	20	4776604	G	A	40	46
BRCA	TCGA-AO-A0JM	CDH4	SNP	Silent	20	60348142	C	T	19	51
BRCA	TCGA-AO-A0JM	ADAMTS5	SNP	Missense_Mutation	21	28337771	C	G	26	79
BRCA	TCGA-AO-A0JM	GTSE1	SNP	Missense_Mutation	22	46712078	G	A	37	46
BRCA	TCGA-AO-A0JM	ARHGAP36	SNP	Missense_Mutation	23	130220600	C	T	23	53
BRCA	TCGA-AO-A0JM	C3orf20	SNP	Silent	3	14725873	C	T	27	28
BRCA	TCGA-AO-A0JM	CHL1	SNP	Missense_Mutation	3	404937	C	T	27	60
BRCA	TCGA-AO-A0JM	GBE1	SNP	Missense_Mutation	3	81698093	G	C	33	85
BRCA	TCGA-AO-A0JM	GABRR3	SNP	Silent	3	97726675	C	G	17	53
BRCA	TCGA-AO-A0JM	PCDHA1	SNP	Missense_Mutation	5	140167371	T	G	59	73
BRCA	TCGA-AO-A0JM	TFAP2A	SNP	Missense_Mutation	6	10398921	A	C	9	93
BRCA	TCGA-AO-A0JM	HIVEP1	SNP	Missense_Mutation	6	12124632	C	T	19	51
BRCA	TCGA-AO-A0JM	BRPF3	DNP	Missense_Mutation	6	36178148	TT	AG	64	65
BRCA	TCGA-AO-A0JM	FBXO24	SNP	Missense_Mutation	7	100187289	G	T	39	51
BRCA	TCGA-AO-A0JM	C7orf53	SNP	Missense_Mutation	7	112124906	G	A	42	49
BRCA	TCGA-AO-A0JM	C7orf60	SNP	Nonsense_Mutation	7	112462138	C	T	30	100
BRCA	TCGA-AO-A0JM	UBE3C	SNP	Missense_Mutation	7	156979555	A	G	8	65
BRCA	TCGA-AO-A0JM	PPP1R9A	SNP	Missense_Mutation	7	94915619	A	C	15	46
BRCA	TCGA-AO-A0JM	PRKDC	SNP	Missense_Mutation	8	48761994	T	G	56	86
BRCA	TCGA-AO-A0JM	ADAMTS13	SNP	Silent	9	136319570	C	T	21	60
BRCA	TCGA-AO-A0JM		SNP	Missense_Mutation	9	90744581	C	T	19	46
BRCA	TCGA-AO-A124	RNPC3	SNP	Missense_Mutation	1	104068843	G	C	39	87
BRCA	TCGA-AO-A124	HIPK1	SNP	Missense_Mutation	1	114483129	T	G	49	63
BRCA	TCGA-AO-A124	ATAD3B	SNP	Silent	1	1426042	G	A	48	65
BRCA	TCGA-AO-A124	ANKRD35	SNP	Missense_Mutation	1	145558223	G	A	33	76
BRCA	TCGA-AO-A124	NBPF14	SNP	Missense_Mutation	1	148004597	A	T	6	47
BRCA	TCGA-AO-A124	SHE	SNP	Missense_Mutation	1	154458425	G	A	42	95
BRCA	TCGA-AO-A124	SPTA1	SNP	Missense_Mutation	1	158646004	C	A	32	91
BRCA	TCGA-AO-A124	OR6K2	SNP	Missense_Mutation	1	158669493	G	T	47	52
BRCA	TCGA-AO-A124	MNDA	DEL	Frame_Shift_Del	1	158818988	G	-	35	51
BRCA	TCGA-AO-A124	F5	SNP	Missense_Mutation	1	169511128	G	A	37	76
BRCA	TCGA-AO-A124	RC3H1	SNP	Silent	1	173916616	C	G	17	33
BRCA	TCGA-AO-A124	IER5	SNP	Silent	1	181058077	C	A	32	64
BRCA	TCGA-AO-A124	SLC30A1	SNP	Missense_Mutation	1	211751857	G	A	37	63
BRCA	TCGA-AO-A124	DNAH14	SNP	Splice_Site	1	225140371	G	A	34	54
BRCA	TCGA-AO-A124	OBSCN	SNP	Missense_Mutation	1	228503574	G	C	41	95
BRCA	TCGA-AO-A124	LYST	DEL	Frame_Shift_Del	1	235909818	TTTCGAGGACC	-	64	63
BRCA	TCGA-AO-A124	RYR2	SNP	Silent	1	237801707	G	A	48	51
BRCA	TCGA-AO-A124	RYR2	SNP	Missense_Mutation	1	237947615	G	T	34	70
BRCA	TCGA-AO-A124	CEP170	SNP	Missense_Mutation	1	243327823	T	C	50	72
BRCA	TCGA-AO-A124	OR13G1	SNP	Missense_Mutation	1	247836055	G	T	47	79
BRCA	TCGA-AO-A124	EIF2C4	SNP	Missense_Mutation	1	36298161	G	A	33	100
BRCA	TCGA-AO-A124	CSF3R	SNP	Missense_Mutation	1	36940986	C	G	27	47
BRCA	TCGA-AO-A124	DAB1	DEL	Splice_Site	1	57537166	CCAGCGCAAGGATAAATTCACAGGTATA	-	30	44
BRCA	TCGA-AO-A124	LEPR	SNP	Missense_Mutation	1	66036458	G	A	36	55
BRCA	TCGA-AO-A124	LRRC7	SNP	Missense_Mutation	1	70460297	C	A	28	51
BRCA	TCGA-AO-A124	SLC44A3	SNP	Silent	1	95330335	G	C	40	26
BRCA	TCGA-AO-A124	HSPA12A	SNP	Missense_Mutation	10	118434446	C	T	27	75
BRCA	TCGA-AO-A124	LRRC27	SNP	Missense_Mutation	10	134151186	A	G	12	55
BRCA	TCGA-AO-A124	WDFY4	SNP	Splice_site	10	50022127	G	C	35	67
BRCA	TCGA-AO-A124	LRIT2	SNP	Missense_Mutation	10	85984799	C	T	32	69
BRCA	TCGA-AO-A124	ARHGAP42	SNP	Missense_Mutation	11	100792303	C	G	21	96
BRCA	TCGA-AO-A124	RNF26	SNP	Silent	11	119206393	C	T	30	58
BRCA	TCGA-AO-A124	EXT2	SNP	Missense_Mutation	11	44228488	C	A	19	32
BRCA	TCGA-AO-A124	OR5B17	SNP	Missense_Mutation	11	58125977	T	C	54	70
BRCA	TCGA-AO-A124	GCN1L1	SNP	Missense_Mutation	12	120565720	C	T	24	95
BRCA	TCGA-AO-A124	PLEKHA5	SNP	Silent	12	19511185	A	G	2	28
BRCA	TCGA-AO-A124	PRICKLE1	SNP	Missense_Mutation	12	42853647	T	G	64	63
BRCA	TCGA-AO-A124	KRT2	SNP	Missense_Mutation	12	53042093	G	A	36	57
BRCA	TCGA-AO-A124	CD9	SNP	Missense_Mutation	12	6309673	T	A	58	67
BRCA	TCGA-AO-A124	BRCA2	SNP	Missense_Mutation	13	32972561	G	C	48	64
BRCA	TCGA-AO-A124	FAM124A	SNP	Missense_Mutation	13	51826195	C	T	23	97
BRCA	TCGA-AO-A124	MYH6	SNP	Splice_site	14	23874978	G	A	40	94
BRCA	TCGA-AO-A124	SYNE3	SNP	Missense_Mutation	14	95918641	G	A	35	60
BRCA	TCGA-AO-A124	LRRK1	SNP	Nonsense_Mutation	15	101567954	G	T	41	84
BRCA	TCGA-AO-A124	ATP10A	DEL	In_Frame_Del	15	25959256	ACTTGTGGCTGG	-	2	51
BRCA	TCGA-AO-A124	RYR3	SNP	Missense_Mutation	15	34034597	C	G	31	40
BRCA	TCGA-AO-A124	ADAMTSL3	SNP	Nonsense_Mutation	15	84639385	C	A	25	62
BRCA	TCGA-AO-A124	PKD1	SNP	Missense_Mutation	16	2152129	A	G	3	10
BRCA	TCGA-AO-A124	STAC2	SNP	Missense_Mutation	17	37369302	G	C	42	53
BRCA	TCGA-AO-A124	CCR7	SNP	Nonsense_Mutation	17	38711515	G	A	46	56
BRCA	TCGA-AO-A124	LRRC37A	SNP	Splice_site	17	44415042	G	T	41	54
BRCA	TCGA-AO-A124	CACNA1G	SNP	Missense_Mutation	17	48653132	G	T	42	61
BRCA	TCGA-AO-A124	APPBP2	SNP	Missense_Mutation	17	58538075	G	A	42	99
BRCA	TCGA-AO-A124	MED13	SNP	Missense_Mutation	17	60087928	A	T	6	63
BRCA	TCGA-AO-A124	HELZ	SNP	Missense_Mutation	17	65082989	G	T	39	99
BRCA	TCGA-AO-A124	CDR2L	SNP	Splice_Site	17	72998158	G	A	35	100
BRCA	TCGA-AO-A124	TP53	SNP	Nonsense_Mutation	17	7578212	G	A	37	66
BRCA	TCGA-AO-A124	RPTOR	SNP	Missense_Mutation	17	78811786	A	T	6	85
BRCA	TCGA-AO-A124	MIB1	SNP	Missense_Mutation	18	19438538	C	G	17	72
BRCA	TCGA-AO-A124	MYOM1	SNP	Missense_Mutation	18	3094191	C	G	31	86
BRCA	TCGA-AO-A124	DCC	SNP	Missense_Mutation	18	50918216	G	A	40	84
BRCA	TCGA-AO-A124	EPB41L3	SNP	Missense_Mutation	18	5445173	A	G	1	91
BRCA	TCGA-AO-A124	ZNF66P	DEL	In_Frame_Del	19	20973561	AAA	-	9	51
BRCA	TCGA-AO-A124	FCGBP	SNP	Missense_Mutation	19	40383993	T	A	60	49
BRCA	TCGA-AO-A124	MAP2K2	SNP	Missense_Mutation	19	4117473	C	T	23	95
BRCA	TCGA-AO-A124	SYNGR4	SNP	Silent	19	48879377	A	T	9	29
BRCA	TCGA-AO-A124	AP2A1	SNP	Missense_Mutation	19	50309000	C	G	21	76
BRCA	TCGA-AO-A124	MYH14	SNP	Missense_Mutation	19	50805047	C	A	23	56
BRCA	TCGA-AO-A124	NLRP8	SNP	Missense_Mutation	19	56485096	C	G	18	47
BRCA	TCGA-AO-A124	MCOLN1	SNP	Missense_Mutation	19	7589918	C	A	18	54
BRCA	TCGA-AO-A124	MUC16	SNP	Missense_Mutation	19	9050021	G	A	40	40
BRCA	TCGA-AO-A124	MUC16	SNP	Missense_Mutation	19	9087467	G	T	46	50
BRCA	TCGA-AO-A124	SLC9A2	SNP	Missense_Mutation	2	103321040	C	G	17	74
BRCA	TCGA-AO-A124	YSK4	SNP	Missense_Mutation	2	135744731	T	G	60	50
BRCA	TCGA-AO-A124	CRYGC	SNP	Missense_Mutation	2	208993146	C	A	29	73
BRCA	TCGA-AO-A124	CRYGC	SNP	Nonsense_Mutation	2	208993166	C	A	30	82
BRCA	TCGA-AO-A124	APOB	SNP	Missense_Mutation	2	21235092	G	T	33	60
BRCA	TCGA-AO-A124	TMEM214	SNP	Missense_Mutation	2	27255983	A	G	9	50
BRCA	TCGA-AO-A124	FAM98A	SNP	Missense_Mutation	2	33810192	C	G	18	94
BRCA	TCGA-AO-A124	SPTBN1	SNP	Missense_Mutation	2	54859818	C	G	28	64
BRCA	TCGA-AO-A124	LRRTM1	SNP	Missense_Mutation	2	80529665	T	A	56	91
BRCA	TCGA-AO-A124	FER1L5	DEL	In_Frame_Del	2	97329191	CAGACC	-	25	51
BRCA	TCGA-AO-A124	ESF1	SNP	Missense_Mutation	20	13698067	T	G	56	64
BRCA	TCGA-AO-A124	MYBL2	SNP	Missense_Mutation	20	42343796	C	A	32	69
BRCA	TCGA-AO-A124	LSM14B	SNP	Silent	20	60705737	G	T	45	56
BRCA	TCGA-AO-A124	SRMS	SNP	Missense_Mutation	20	62178623	C	T	23	56
BRCA	TCGA-AO-A124	BID	SNP	Missense_Mutation	22	18220856	C	T	19	50
BRCA	TCGA-AO-A124	TTC28	SNP	Missense_Mutation	22	29025722	G	T	45	65
BRCA	TCGA-AO-A124	AP1B1	SNP	Silent	22	29737711	G	A	33	78
BRCA	TCGA-AO-A124	AKAP14	SNP	Missense_Mutation	23	119037310	G	C	34	43
BRCA	TCGA-AO-A124	ODZ1	SNP	Silent	23	123630946	A	G	8	56
BRCA	TCGA-AO-A124	CXorf58	SNP	Missense_Mutation	23	23956748	A	T	3	52
BRCA	TCGA-AO-A124	PCYT1B	SNP	Missense_Mutation	23	24608286	T	C	55	87
BRCA	TCGA-AO-A124	TAF1	SNP	Missense_Mutation	23	70604808	A	G	12	87
BRCA	TCGA-AO-A124	CYLC1	SNP	Missense_Mutation	23	83129529	G	C	33	57
BRCA	TCGA-AO-A124	CPNE4	SNP	Missense_Mutation	3	131300432	A	T	12	55
BRCA	TCGA-AO-A124	RARRES1	INS	Frame_Shift_Ins	3	158431599	-	T	27	46
BRCA	TCGA-AO-A124	IFT80	SNP	Missense_Mutation	3	159997110	A	C	12	54
BRCA	TCGA-AO-A124	ZBBX	SNP	Missense_Mutation	3	167023671	T	A	64	46
BRCA	TCGA-AO-A124	TBCCD1	SNP	Silent	3	186272045	T	G	63	59
BRCA	TCGA-AO-A124	DLEC1	SNP	Missense_Mutation	3	38080927	C	G	28	59
BRCA	TCGA-AO-A124	AMT	DEL	In_Frame_Del	3	49456564	CCCCGCTACCGG	-	22	56
BRCA	TCGA-AO-A124	CACNA2D3	SNP	Missense_Mutation	3	54905585	G	T	37	89
BRCA	TCGA-AO-A124	ROBO1	SNP	Silent	3	78737828	T	A	55	58
BRCA	TCGA-AO-A124	C4orf36	SNP	Missense_Mutation	4	87809333	C	T	18	50
BRCA	TCGA-AO-A124	DMXL1	SNP	Missense_Mutation	5	118573104	T	C	49	84
BRCA	TCGA-AO-A124	HMGXB3	SNP	Missense_Mutation	5	149425158	G	C	48	79
BRCA	TCGA-AO-A124	LMAN2	SNP	Missense_Mutation	5	176778492	G	A	48	73
BRCA	TCGA-AO-A124	TRIM41	SNP	Silent	5	180661772	T	C	56	54
BRCA	TCGA-AO-A124	MICAL1	SNP	Missense_Mutation	6	109766449	C	G	28	47
BRCA	TCGA-AO-A124	MAN1A1	SNP	Missense_Mutation	6	119501033	A	G	11	90
BRCA	TCGA-AO-A124	SYNE1	SNP	Missense_Mutation	6	152546921	C	G	19	87
BRCA	TCGA-AO-A124	FKBPL	SNP	Missense_Mutation	6	32097227	G	C	39	55
BRCA	TCGA-AO-A124	C6orf89	SNP	Missense_Mutation	6	36882408	G	A	35	75
BRCA	TCGA-AO-A124	PRPF4B	SNP	Missense_Mutation	6	4032461	G	C	35	86
BRCA	TCGA-AO-A124	FRS3	SNP	Missense_Mutation	6	41738737	C	T	31	75
BRCA	TCGA-AO-A124	SNAP91	SNP	Missense_Mutation	6	84324580	C	T	29	70
BRCA	TCGA-AO-A124	TBX18	SNP	Silent	6	85457662	G	T	39	49
BRCA	TCGA-AO-A124	EPHB4	SNP	Missense_Mutation	7	100417260	C	T	18	70
BRCA	TCGA-AO-A124	TRIM56	SNP	Missense_Mutation	7	100730642	G	T	37	58
BRCA	TCGA-AO-A124	CFTR	SNP	Missense_Mutation	7	117282532	T	C	63	89
BRCA	TCGA-AO-A124	FSCN3	SNP	Silent	7	127235672	C	A	30	55
BRCA	TCGA-AO-A124	MEST	SNP	Splice_Site	7	130140628	A	C	7	77
BRCA	TCGA-AO-A124	ZC3HAV1	SNP	Silent	7	138732379	C	A	29	75
BRCA	TCGA-AO-A124	MKRN1	SNP	Missense_Mutation	7	140154472	A	T	3	67
BRCA	TCGA-AO-A124	ZNF783	SNP	Silent	7	148963924	C	T	31	50
BRCA	TCGA-AO-A124	GIMAP2	SNP	Silent	7	150389497	C	T	25	53
BRCA	TCGA-AO-A124	HTR5A	SNP	Missense_Mutation	7	154863184	G	T	46	98
BRCA	TCGA-AO-A124	GLI3	SNP	Silent	7	42088133	C	T	27	52
BRCA	TCGA-AO-A124	HECW1	SNP	Missense_Mutation	7	43601517	C	A	20	100
BRCA	TCGA-AO-A124	DDX56	SNP	Missense_Mutation	7	44606075	T	C	56	59
BRCA	TCGA-AO-A124	ERVW-1	SNP	Missense_Mutation	7	92099631	G	C	43	51
BRCA	TCGA-AO-A124	DLC1	SNP	Missense_Mutation	8	13357276	G	T	42	86
BRCA	TCGA-AO-A124	PXDNL	SNP	Silent	8	52287255	G	A	39	41
BRCA	TCGA-AO-A124	CNTRL	SNP	Missense_Mutation	9	123937323	C	G	25	87
BRCA	TCGA-AO-A124	NR6A1	SNP	Missense_Mutation	9	127316795	C	T	27	85
BRCA	TCGA-AO-A124	FCN1	SNP	Silent	9	137808243	C	A	25	57
BRCA	TCGA-AO-A124	FAM166A	SNP	Missense_Mutation	9	140142119	C	T	17	54
BRCA	TCGA-AO-A124	SMARCA2	SNP	Missense_Mutation	9	2058393	C	G	25	100
BRCA	TCGA-AO-A124	KIF24	SNP	Missense_Mutation	9	34269280	G	T	46	93
BRCA	TCGA-AO-A124	FANCG	SNP	Missense_Mutation	9	35078182	G	C	33	79
BRCA	TCGA-AO-A124	SLC28A3	SNP	Silent	9	86902989	G	T	45	50
BRCA	TCGA-AO-A125	CCT3	SNP	Missense_Mutation	1	156305652	C	G	32	90
BRCA	TCGA-AO-A125	BCAN	SNP	Missense_Mutation	1	156622582	A	G	13	50
BRCA	TCGA-AO-A125	FHAD1	SNP	Splice_site	1	15694118	G	A	35	74
BRCA	TCGA-AO-A125	FCRL3	SNP	Silent	1	157667171	G	T	47	47
BRCA	TCGA-AO-A125	ACTN2	SNP	Splice_site	1	236894614	G	T	35	99
BRCA	TCGA-AO-A125	KIF26B	SNP	Missense_Mutation	1	245861431	C	T	22	96
BRCA	TCGA-AO-A125	BAI2	SNP	Silent	1	32210310	C	T	31	69
BRCA	TCGA-AO-A125	CCDC168	DEL	Frame_Shift_Del	13	103382805	T	-	56	48
BRCA	TCGA-AO-A125	IREB2	SNP	Missense_Mutation	15	78758680	A	G	13	58
BRCA	TCGA-AO-A125	HYDIN	SNP	Nonsense_Mutation	16	71008518	G	A	39	66
BRCA	TCGA-AO-A125	PRPSAP2	SNP	Nonsense_Mutation	17	18785979	C	T	17	100
BRCA	TCGA-AO-A125	MRPL45	SNP	Missense_Mutation	17	36453190	G	C	35	56
BRCA	TCGA-AO-A125	FASN	SNP	Missense_Mutation	17	80054315	C	G	30	95
BRCA	TCGA-AO-A125	SLC39A6	SNP	Missense_Mutation	18	33706858	G	C	39	57
BRCA	TCGA-AO-A125	SAMD1	DEL	In_Frame_Del	19	14200113	TCT	-	50	67
BRCA	TCGA-AO-A125	ATCAY	SNP	Silent	19	3908273	C	T	19	52
BRCA	TCGA-AO-A125	PRKD2	SNP	Missense_Mutation	19	47207835	G	A	38	75
BRCA	TCGA-AO-A125	IL17RA	SNP	Silent	22	17577966	G	A	39	46
BRCA	TCGA-AO-A125	PHKA2	SNP	Silent	23	18969226	G	T	35	49
BRCA	TCGA-AO-A125	CDX4	SNP	Missense_Mutation	23	72674300	C	T	31	73
BRCA	TCGA-AO-A125	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-AO-A125	TCAIM	SNP	Missense_Mutation	3	44441887	G	A	35	47
BRCA	TCGA-AO-A125	OTOP1	SNP	Missense_Mutation	4	4199797	G	A	40	65
BRCA	TCGA-AO-A125	PCDHA6	SNP	Missense_Mutation	5	140208763	G	A	38	56
BRCA	TCGA-AO-A125	HK3	SNP	Missense_Mutation	5	176308376	G	A	39	77
BRCA	TCGA-AO-A125	CDH10	DEL	Splice_site	5	24535931	C	-	18	100
BRCA	TCGA-AO-A125	RASGRF2	SNP	Silent	5	80390150	G	A	45	60
BRCA	TCGA-AO-A125	PRDM1	SNP	Silent	6	106553787	C	T	31	48
BRCA	TCGA-AO-A125	SAP25	SNP	Missense_Mutation	7	100170189	C	T	21	68
BRCA	TCGA-AO-A125	MLL3	SNP	Nonsense_Mutation	7	151880094	C	A	32	99
BRCA	TCGA-AO-A125	TEX15	SNP	Missense_Mutation	8	30701516	T	A	60	70
BRCA	TCGA-AO-A125	CSMD1	SNP	Silent	8	3855433	T	C	51	21
BRCA	TCGA-AO-A125	JAK2	DEL	Frame_Shift_Del	9	5077523	A	-	13	57
BRCA	TCGA-AO-A125	ECM2	DEL	In_Frame_Del	9	95277299	TCT	-	50	59
BRCA	TCGA-AO-A126	ENSG00000238261	SNP	Splice_Site	1	143398428	G	A	44	50
BRCA	TCGA-AO-A126	OR13G1	SNP	Missense_Mutation	1	247836219	A	C	12	72
BRCA	TCGA-AO-A126	RERE	SNP	Missense_Mutation	1	8421526	A	G	12	88
BRCA	TCGA-AO-A126	OBFC1	SNP	Missense_Mutation	10	105657473	G	T	41	65
BRCA	TCGA-AO-A126	ADD3	SNP	Missense_Mutation	10	111892110	A	T	4	58
BRCA	TCGA-AO-A126	SHANK2	SNP	Silent	11	70331577	G	A	40	48
BRCA	TCGA-AO-A126	CDCA4	SNP	Missense_Mutation	14	105477579	C	T	31	82
BRCA	TCGA-AO-A126	PDP2	SNP	Missense_Mutation	16	66918915	C	T	31	88
BRCA	TCGA-AO-A126	SLC13A5	SNP	Silent	17	6606363	G	A	40	38
BRCA	TCGA-AO-A126	ZNF71	SNP	Missense_Mutation	19	57133612	C	A	18	50
BRCA	TCGA-AO-A126	ICOS	SNP	Missense_Mutation	2	204820385	G	A	45	54
BRCA	TCGA-AO-A126	FER1L5	SNP	Missense_Mutation	2	97355022	G	A	48	93
BRCA	TCGA-AO-A126	PPIL2	SNP	Missense_Mutation	22	22049730	T	C	51	41
BRCA	TCGA-AO-A126	PPM1F	SNP	Splice_site	22	22300420	T	C	51	61
BRCA	TCGA-AO-A126	PNCK	SNP	Silent	23	152936838	C	T	19	49
BRCA	TCGA-AO-A126	MAGEE1	SNP	Silent	23	75649280	C	T	23	33
BRCA	TCGA-AO-A126	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-AO-A126	ALPK1	SNP	Missense_Mutation	4	113351611	G	A	40	74
BRCA	TCGA-AO-A126	HELQ	SNP	Missense_Mutation	4	84368010	A	T	7	92
BRCA	TCGA-AO-A126	SPINK5	SNP	Splice_site	5	147505286	G	T	41	64
BRCA	TCGA-AO-A126	IPO11	SNP	Splice_Site	5	61781290	G	T	44	95
BRCA	TCGA-AO-A126	KCNK9	SNP	Silent	8	140631062	G	A	40	58
BRCA	TCGA-AO-A129	NBPF7	SNP	Silent	1	120379945	C	T	27	48
BRCA	TCGA-AO-A129	PRAMEF2	SNP	Silent	1	12919596	C	T	32	56
BRCA	TCGA-AO-A129	FLG	SNP	Missense_Mutation	1	152275739	C	A	30	56
BRCA	TCGA-AO-A129	TNN	SNP	Silent	1	175067625	C	T	25	50
BRCA	TCGA-AO-A129	CACNA1S	SNP	Missense_Mutation	1	201079345	C	A	26	98
BRCA	TCGA-AO-A129	ELF3	SNP	Silent	1	201984385	C	G	31	36
BRCA	TCGA-AO-A129	DEGS1	SNP	Missense_Mutation	1	224371065	C	A	20	55
BRCA	TCGA-AO-A129	SIPA1L2	SNP	Silent	1	232581367	G	A	39	46
BRCA	TCGA-AO-A129	ACTN2	SNP	Missense_Mutation	1	236925894	C	A	25	100
BRCA	TCGA-AO-A129	OR2T11	SNP	Missense_Mutation	1	248789657	A	G	7	59
BRCA	TCGA-AO-A129	NR0B2	SNP	Missense_Mutation	1	27238463	C	T	19	56
BRCA	TCGA-AO-A129	LPHN2	SNP	Missense_Mutation	1	82416781	C	A	20	79
BRCA	TCGA-AO-A129	SYDE2	SNP	Missense_Mutation	1	85624636	T	C	63	62
BRCA	TCGA-AO-A129	HFM1	SNP	Missense_Mutation	1	91784682	T	A	64	70
BRCA	TCGA-AO-A129	CWF19L1	SNP	Missense_Mutation	10	102003460	T	C	59	66
BRCA	TCGA-AO-A129	FRMPD2	SNP	Splice_Site	10	49452893	C	G	32	75
BRCA	TCGA-AO-A129	ZNF365	SNP	Missense_Mutation	10	64136169	C	A	24	89
BRCA	TCGA-AO-A129	HNRNPH3	SNP	Missense_Mutation	10	70097706	G	C	33	100
BRCA	TCGA-AO-A129	KAT6B	SNP	Missense_Mutation	10	76788498	A	T	7	59
BRCA	TCGA-AO-A129	ATM	DEL	Frame_Shift_Del	11	108106472	T	-	52	58
BRCA	TCGA-AO-A129	ANKK1	SNP	Missense_Mutation	11	113269799	G	A	44	66
BRCA	TCGA-AO-A129	PHLDB1	SNP	Silent	11	118516531	C	A	29	56
BRCA	TCGA-AO-A129	CAPRIN1	DEL	In_Frame_Del	11	34107665	CCCCACTCTTTGACT	-	26	57
BRCA	TCGA-AO-A129	OR52R1	SNP	Silent	11	4825512	C	T	19	33
BRCA	TCGA-AO-A129	FOLH1	SNP	Missense_Mutation	11	49175795	A	C	16	80
BRCA	TCGA-AO-A129	PYGM	DEL	Frame_Shift_Del	11	64527236	ATTGCGGTCCTTTACG	-	8	49
BRCA	TCGA-AO-A129	SYT9	SNP	Missense_Mutation	11	7334807	A	G	8	76
BRCA	TCGA-AO-A129	RNF169	SNP	Missense_Mutation	11	74546847	G	A	40	81
BRCA	TCGA-AO-A129	C12orf36	SNP	Missense_Mutation	12	13529254	T	C	58	62
BRCA	TCGA-AO-A129	C13orf35	SNP	Missense_Mutation	13	113333794	A	G	3	50
BRCA	TCGA-AO-A129	OR4K13	SNP	Missense_Mutation	14	20502724	T	G	60	68
BRCA	TCGA-AO-A129	LTBP2	SNP	Missense_Mutation	14	74972814	A	C	7	88
BRCA	TCGA-AO-A129	SMEK1	SNP	Missense_Mutation	14	91948389	G	A	45	89
BRCA	TCGA-AO-A129	OTUD7A	SNP	Missense_Mutation	15	31776741	C	T	19	95
BRCA	TCGA-AO-A129	GATM	SNP	Missense_Mutation	15	45658607	T	A	51	86
BRCA	TCGA-AO-A129	LOC100289289	SNP	Missense_Mutation	15	62547578	G	A	34	57
BRCA	TCGA-AO-A129	ZP2	SNP	Missense_Mutation	16	21209118	C	G	30	50
BRCA	TCGA-AO-A129	ZNF500	SNP	Missense_Mutation	16	4802723	G	T	41	66
BRCA	TCGA-AO-A129	GPR97	DEL	Frame_Shift_Del	16	57714218	GTCAGACCTGAGGGGA	-	44	50
BRCA	TCGA-AO-A129	MYH13	SNP	Silent	17	10243510	A	T	11	55
BRCA	TCGA-AO-A129	WDR81	SNP	Missense_Mutation	17	1630415	T	G	56	92
BRCA	TCGA-AO-A129	SPECC1	SNP	Silent	17	20156897	C	T	29	74
BRCA	TCGA-AO-A129	HOXB8	SNP	Missense_Mutation	17	46690618	C	A	28	58
BRCA	TCGA-AO-A129	USP6	SNP	Missense_Mutation	17	5036239	G	T	47	66
BRCA	TCGA-AO-A129	TEX14	SNP	Silent	17	56688647	C	T	32	54
BRCA	TCGA-AO-A129	SLC13A5	SNP	Missense_Mutation	17	6599001	C	T	27	65
BRCA	TCGA-AO-A129	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-AO-A129	EIF4A3	SNP	Missense_Mutation	17	78112938	C	A	17	80
BRCA	TCGA-AO-A129	TMEM38A	SNP	Splice_site	19	16793232	G	T	44	98
BRCA	TCGA-AO-A129	BABAM1	SNP	Missense_Mutation	19	17379746	G	T	34	55
BRCA	TCGA-AO-A129	ACTN4	DEL	Frame_Shift_Del	19	39205151	A	-	5	86
BRCA	TCGA-AO-A129	NCCRP1	SNP	Missense_Mutation	19	39691392	A	G	11	74
BRCA	TCGA-AO-A129	SUPT5H	SNP	Missense_Mutation	19	39957372	G	T	46	100
BRCA	TCGA-AO-A129	MAP3K10	SNP	Missense_Mutation	19	40720993	C	G	18	93
BRCA	TCGA-AO-A129	STRN4	SNP	Silent	19	47242077	C	T	30	65
BRCA	TCGA-AO-A129	ZNF460	SNP	Missense_Mutation	19	57803047	G	C	48	60
BRCA	TCGA-AO-A129	MYO1F	SNP	Missense_Mutation	19	8620576	G	T	44	66
BRCA	TCGA-AO-A129	IL18R1	SNP	Silent	2	102988435	T	C	52	50
BRCA	TCGA-AO-A129	SCN2A	SNP	Missense_Mutation	2	166201296	T	A	56	91
BRCA	TCGA-AO-A129	ABCA12	SNP	Silent	2	215831626	G	A	35	55
BRCA	TCGA-AO-A129	TP53I3	SNP	Missense_Mutation	2	24303814	C	T	30	60
BRCA	TCGA-AO-A129	BCL11A	SNP	Missense_Mutation	2	60689460	C	G	32	100
BRCA	TCGA-AO-A129	MEIS1	SNP	Silent	2	66664937	G	A	38	66
BRCA	TCGA-AO-A129	REM1	SNP	Nonsense_Mutation	20	30070112	C	G	29	52
BRCA	TCGA-AO-A129	ARHGAP40	SNP	Missense_Mutation	20	37267927	G	T	44	79
BRCA	TCGA-AO-A129	RBPJL	SNP	Missense_Mutation	20	43936867	G	T	39	48
BRCA	TCGA-AO-A129	SLC12A5	SNP	Missense_Mutation	20	44676722	G	C	41	91
BRCA	TCGA-AO-A129	RSPH1	SNP	Missense_Mutation	21	43906485	G	C	45	63
BRCA	TCGA-AO-A129	SH3BP1	SNP	Missense_Mutation	22	38044419	G	T	46	64
BRCA	TCGA-AO-A129	MGAT3	SNP	Missense_Mutation	22	39884853	C	G	22	97
BRCA	TCGA-AO-A129	FAM48B1	SNP	Missense_Mutation	23	24381065	A	C	2	79
BRCA	TCGA-AO-A129	DDX3X	SNP	Missense_Mutation	23	41204455	G	A	45	99
BRCA	TCGA-AO-A129	DGAT2L6	SNP	Missense_Mutation	23	69424916	A	G	9	62
BRCA	TCGA-AO-A129	RNF13	SNP	Missense_Mutation	3	149619889	C	T	32	97
BRCA	TCGA-AO-A129	LAMB2	SNP	Missense_Mutation	3	49162717	G	C	39	83
BRCA	TCGA-AO-A129	ENAM	SNP	Missense_Mutation	4	71500244	C	A	17	43
BRCA	TCGA-AO-A129	IL6ST	SNP	Missense_Mutation	5	55237028	C	G	18	55
BRCA	TCGA-AO-A129	IQGAP2	SNP	Nonsense_Mutation	5	75993917	C	T	25	100
BRCA	TCGA-AO-A129	SLC22A3	SNP	Silent	6	160858230	G	A	40	27
BRCA	TCGA-AO-A129	LOC100289195	SNP	Missense_Mutation	6	160882378	G	T	45	49
BRCA	TCGA-AO-A129	DAXX	SNP	Silent	6	33288193	A	G	7	55
BRCA	TCGA-AO-A129	TMEM63B	SNP	Silent	6	44119646	C	T	31	60
BRCA	TCGA-AO-A129	TRAM2	SNP	Missense_Mutation	6	52370475	G	C	42	84
BRCA	TCGA-AO-A129	ATXN7L1	SNP	Missense_Mutation	7	105254792	C	G	32	73
BRCA	TCGA-AO-A129	PTPRZ1	SNP	Missense_Mutation	7	121652195	C	T	32	73
BRCA	TCGA-AO-A129	FAM115A	SNP	Missense_Mutation	7	143573445	G	C	33	81
BRCA	TCGA-AO-A129	IGF2BP3	SNP	Silent	7	23352363	A	G	8	58
BRCA	TCGA-AO-A129	CCDC126	SNP	Splice_site	7	23682551	G	A	39	54
BRCA	TCGA-AO-A129	ABCA13	SNP	Missense_Mutation	7	48349591	G	T	35	40
BRCA	TCGA-AO-A129	VPS13B	SNP	Missense_Mutation	8	100866232	G	C	43	54
BRCA	TCGA-AO-A129	PABPC1	SNP	Splice_Site	8	101733617	A	T	6	86
BRCA	TCGA-AO-A129	DPYS	SNP	Missense_Mutation	8	105441860	T	C	62	80
BRCA	TCGA-AO-A129	ENPP2	SNP	Missense_Mutation	8	120613690	G	C	40	35
BRCA	TCGA-AO-A129	KCNQ3	SNP	Silent	8	133150245	G	C	33	55
BRCA	TCGA-AO-A129	CSMD1	SNP	Silent	8	3000129	T	G	58	13
BRCA	TCGA-AO-A129	PROSC	SNP	Silent	8	37635577	C	T	27	46
BRCA	TCGA-AO-A129	ZFHX4	SNP	Silent	8	77761274	G	C	43	58
BRCA	TCGA-AO-A12A	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-AO-A12A	CWF19L2	INS	Frame_Shift_Ins	11	107300004	-	T	8	45
BRCA	TCGA-AO-A12A	ERBB3	SNP	Nonsense_Mutation	12	56479001	C	T	29	49
BRCA	TCGA-AO-A12A	OTOGL	SNP	Splice_site	12	80750196	G	T	41	70
BRCA	TCGA-AO-A12A	FLRT2	SNP	Silent	14	86089046	G	A	38	34
BRCA	TCGA-AO-A12A	NTN3	SNP	Silent	16	2522416	C	T	23	50
BRCA	TCGA-AO-A12A	ALPK2	SNP	Missense_Mutation	18	56203486	T	A	54	62
BRCA	TCGA-AO-A12A	MAP1S	SNP	Missense_Mutation	19	17845130	G	A	38	71
BRCA	TCGA-AO-A12A	ZNF93	SNP	Missense_Mutation	19	20026206	G	A	44	56
BRCA	TCGA-AO-A12A	SRRM5	SNP	Missense_Mutation	19	44117260	C	A	17	39
BRCA	TCGA-AO-A12A	CATSPERD	SNP	Missense_Mutation	19	5778547	C	T	23	57
BRCA	TCGA-AO-A12A	FAM47C	SNP	Missense_Mutation	23	37027942	C	T	23	54
BRCA	TCGA-AO-A12A	KDM6A	SNP	Missense_Mutation	23	44942776	T	C	53	89
BRCA	TCGA-AO-A12A	PAQR9	SNP	Silent	3	142681561	G	A	37	49
BRCA	TCGA-AO-A12A	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-AO-A12A	PCDHGB2	SNP	Silent	5	140741223	G	T	45	52
BRCA	TCGA-AO-A12A	GRIA1	SNP	Silent	5	153056565	G	A	38	46
BRCA	TCGA-AO-A12A	POLH	SNP	Silent	6	43571740	G	A	33	47
BRCA	TCGA-AO-A12B	AMY2A	SNP	Missense_Mutation	1	104162362	A	T	7	70
BRCA	TCGA-AO-A12B	DNM3	SNP	Missense_Mutation	1	171958092	T	A	50	61
BRCA	TCGA-AO-A12B	PTPN14	SNP	Nonsense_Mutation	1	214543010	G	A	39	87
BRCA	TCGA-AO-A12B	PRKCQ	SNP	Missense_Mutation	10	6470185	T	C	54	69
BRCA	TCGA-AO-A12B	MTNR1B	SNP	Silent	11	92715124	C	T	27	39
BRCA	TCGA-AO-A12B	GUCY2C	SNP	Splice_Site	12	14825805	A	C	14	72
BRCA	TCGA-AO-A12B	LIMA1	SNP	Missense_Mutation	12	50616076	G	T	47	67
BRCA	TCGA-AO-A12B	TRHDE	SNP	Nonsense_Mutation	12	72956810	C	T	29	64
BRCA	TCGA-AO-A12B	OSBPL8	SNP	Missense_Mutation	12	76786476	G	A	40	81
BRCA	TCGA-AO-A12B	TRPC4	SNP	Silent	13	38357162	A	G	15	43
BRCA	TCGA-AO-A12B	PKD1	SNP	Missense_Mutation	16	2144180	G	C	34	49
BRCA	TCGA-AO-A12B	CTCF	DEL	Frame_Shift_Del	16	67644796	GAGA	-	41	94
BRCA	TCGA-AO-A12B	USP32	SNP	Missense_Mutation	17	58260550	C	T	27	63
BRCA	TCGA-AO-A12B	RFPL4A	SNP	Silent	19	56274382	G	T	44	44
BRCA	TCGA-AO-A12B	ENSG00000229292	SNP	Silent	19	56284386	G	T	44	45
BRCA	TCGA-AO-A12B	PAQR9	SNP	Missense_Mutation	3	142681430	G	A	39	100
BRCA	TCGA-AO-A12B	CHST2	SNP	Silent	3	142840933	C	T	19	68
BRCA	TCGA-AO-A12B	PCDHA12	SNP	Silent	5	140256980	C	T	19	49
BRCA	TCGA-AO-A12B	GFPT2	SNP	Silent	5	179740867	G	A	38	22
BRCA	TCGA-AO-A12B	NNT	SNP	Missense_Mutation	5	43616033	T	G	64	60
BRCA	TCGA-AO-A12B	ADAMTS6	SNP	Missense_Mutation	5	64748575	G	A	39	85
BRCA	TCGA-AO-A12B	ANGPT2	SNP	Missense_Mutation	8	6420368	C	G	24	84
BRCA	TCGA-AO-A12D	PRAMEF17	SNP	Missense_Mutation	1	13716922	G	A	41	50
BRCA	TCGA-AO-A12D	OR2B11	SNP	Nonsense_Mutation	1	247614573	G	A	40	66
BRCA	TCGA-AO-A12D	GBP5	SNP	Missense_Mutation	1	89732775	C	G	29	69
BRCA	TCGA-AO-A12D	SEC31B	SNP	Missense_Mutation	10	102255183	C	G	32	80
BRCA	TCGA-AO-A12D	SEC31B	SNP	Missense_Mutation	10	102269149	G	A	37	74
BRCA	TCGA-AO-A12D	KAT6B	SNP	Missense_Mutation	10	76603067	G	A	39	86
BRCA	TCGA-AO-A12D	UPK2	SNP	Missense_Mutation	11	118828354	G	C	33	63
BRCA	TCGA-AO-A12D	PRKRIR	SNP	Missense_Mutation	11	76062204	C	T	29	97
BRCA	TCGA-AO-A12D	CUX2	SNP	Missense_Mutation	12	111785675	C	T	23	46
BRCA	TCGA-AO-A12D	VPS33A	SNP	Missense_Mutation	12	122716807	C	G	30	100
BRCA	TCGA-AO-A12D	FAM192A	SNP	Silent	16	57188235	G	A	33	53
BRCA	TCGA-AO-A12D	PIEZO1	SNP	Silent	16	88799821	G	A	37	50
BRCA	TCGA-AO-A12D	TP53	DEL	Frame_Shift_Del	17	7577558	G	-	35	64
BRCA	TCGA-AO-A12D	GREB1L	SNP	Silent	18	19019528	C	T	21	51
BRCA	TCGA-AO-A12D	TPO	SNP	Missense_Mutation	2	1500429	G	A	47	82
BRCA	TCGA-AO-A12D	XRN2	SNP	Missense_Mutation	20	21329049	G	A	39	83
BRCA	TCGA-AO-A12D	PLCG1	SNP	Missense_Mutation	20	39802138	G	A	45	100
BRCA	TCGA-AO-A12D	ODZ1	SNP	Missense_Mutation	23	123518516	C	T	17	99
BRCA	TCGA-AO-A12D	ZNF157	SNP	Missense_Mutation	23	47270116	G	C	47	58
BRCA	TCGA-AO-A12D	ZNF41	SNP	Missense_Mutation	23	47307056	G	A	40	52
BRCA	TCGA-AO-A12D	GFM1	SNP	Missense_Mutation	3	158376754	G	A	41	98
BRCA	TCGA-AO-A12D	MUC4	SNP	Missense_Mutation	3	195506364	G	C	40	64
BRCA	TCGA-AO-A12D	EPHA6	SNP	Missense_Mutation	3	97185269	C	G	30	49
BRCA	TCGA-AO-A12D	BOD1L1	SNP	Silent	4	13605938	G	A	45	51
BRCA	TCGA-AO-A12D	GLRB	SNP	Silent	4	158065056	C	T	32	47
BRCA	TCGA-AO-A12D	PDGFRA	SNP	Missense_Mutation	4	55141065	G	A	45	79
BRCA	TCGA-AO-A12D	PCDHA5	SNP	Missense_Mutation	5	140203377	C	A	21	58
BRCA	TCGA-AO-A12D	FAM196B	SNP	Missense_Mutation	5	169310560	G	A	36	64
BRCA	TCGA-AO-A12D	AGXT2	SNP	Missense_Mutation	5	35039475	C	A	30	97
BRCA	TCGA-AO-A12D	BEND3	SNP	Missense_Mutation	6	107390228	C	T	29	96
BRCA	TCGA-AO-A12D	HIVEP2	SNP	Silent	6	143091478	G	A	40	40
BRCA	TCGA-AO-A12D	NYAP1	SNP	Missense_Mutation	7	100088184	C	T	30	79
BRCA	TCGA-AO-A12D	EXOC4	SNP	Missense_Mutation	7	132937919	C	T	31	82
BRCA	TCGA-AO-A12D	CYTH3	SNP	Silent	7	6210581	G	A	45	76
BRCA	TCGA-AO-A12D	TRIM55	SNP	Silent	8	67040682	C	A	29	71
BRCA	TCGA-AO-A12D	SLCO5A1	SNP	Missense_Mutation	8	70591657	G	T	45	78
BRCA	TCGA-AO-A12D	TGFBR1	SNP	Missense_Mutation	9	101900249	A	T	9	90
BRCA	TCGA-AO-A12D	DCAF12	SNP	Missense_Mutation	9	34125232	G	A	35	67
BRCA	TCGA-AO-A12E	WDR78	SNP	Missense_Mutation	1	67306238	C	T	27	61
BRCA	TCGA-AO-A12E	IDI1	SNP	Missense_Mutation	10	1088646	C	T	30	94
BRCA	TCGA-AO-A12E	IKZF5	SNP	Silent	10	124753899	G	A	41	64
BRCA	TCGA-AO-A12E	ZNF438	DEL	Frame_Shift_Del	10	31139222	C	-	25	96
BRCA	TCGA-AO-A12E	HERC4	SNP	Silent	10	69692462	C	T	23	51
BRCA	TCGA-AO-A12E	COL13A1	SNP	Missense_Mutation	10	71665573	C	T	23	60
BRCA	TCGA-AO-A12E	MYOF	SNP	Silent	10	95191210	C	T	19	30
BRCA	TCGA-AO-A12E	TBCEL	SNP	Missense_Mutation	11	120925823	G	A	48	78
BRCA	TCGA-AO-A12E	RILPL1	SNP	Silent	12	124008109	C	T	28	53
BRCA	TCGA-AO-A12E	ITGA7	SNP	Missense_Mutation	12	56092319	C	T	27	95
BRCA	TCGA-AO-A12E	CHD4	SNP	Missense_Mutation	12	6701926	G	T	44	100
BRCA	TCGA-AO-A12E	XPO4	DEL	Frame_Shift_Del	13	21357913	TT	-	56	90
BRCA	TCGA-AO-A12E	ITPK1	SNP	Missense_Mutation	14	93412768	C	A	23	78
BRCA	TCGA-AO-A12E	PSMD3	SNP	Missense_Mutation	17	38145029	G	T	38	65
BRCA	TCGA-AO-A12E	FFAR3	SNP	Missense_Mutation	19	35850292	G	C	43	47
BRCA	TCGA-AO-A12E	SPAG16	SNP	Missense_Mutation	2	214181974	C	T	20	60
BRCA	TCGA-AO-A12E	BPIFB3	SNP	Splice_site	20	31659972	C	T	19	43
BRCA	TCGA-AO-A12E	ZBED4	SNP	Missense_Mutation	22	50277363	A	T	12	55
BRCA	TCGA-AO-A12E	ZNF620	SNP	Splice_Site	3	40554007	G	T	44	57
BRCA	TCGA-AO-A12E	KIAA1109	SNP	Missense_Mutation	4	123268873	C	G	26	65
BRCA	TCGA-AO-A12E	FAT2	SNP	Missense_Mutation	5	150946277	G	C	42	100
BRCA	TCGA-AO-A12E	GALNT10	SNP	Missense_Mutation	5	153795448	G	A	37	100
BRCA	TCGA-AO-A12E	C5orf44	SNP	Missense_Mutation	5	64957916	A	G	4	88
BRCA	TCGA-AO-A12E	BDP1	SNP	Silent	5	70818170	C	T	30	53
BRCA	TCGA-AO-A12E	SYNE1	SNP	Missense_Mutation	6	152551687	A	T	7	89
BRCA	TCGA-AO-A12E	MYO1G	SNP	Missense_Mutation	7	45006283	C	T	31	67
BRCA	TCGA-AO-A12E	RGS22	SNP	Silent	8	101020624	C	T	23	54
BRCA	TCGA-AO-A12E	CPA6	SNP	Silent	8	68346441	T	C	51	18
BRCA	TCGA-AO-A12E	INTS8	SNP	Missense_Mutation	8	95869095	A	G	12	67
BRCA	TCGA-AO-A12E	GRIN3A	SNP	Missense_Mutation	9	104499565	G	C	45	69
BRCA	TCGA-AO-A12E	NTRK2	SNP	Missense_Mutation	9	87570325	G	A	40	99
BRCA	TCGA-AO-A12E	HIATL1	SNP	Missense_Mutation	9	97203308	T	G	58	85
BRCA	TCGA-AO-A12F	FLG	SNP	Missense_Mutation	1	152277404	G	A	38	53
BRCA	TCGA-AO-A12F	SESN2	SNP	Nonsense_Mutation	1	28598251	C	T	27	69
BRCA	TCGA-AO-A12F	KIAA1377	SNP	Missense_Mutation	11	101818866	A	C	1	53
BRCA	TCGA-AO-A12F	OPCML	SNP	Silent	11	132290114	G	T	33	81
BRCA	TCGA-AO-A12F	PGAP2	SNP	Missense_Mutation	11	3845190	C	T	31	51
BRCA	TCGA-AO-A12F	TRIM6	SNP	Missense_Mutation	11	5632399	C	T	23	65
BRCA	TCGA-AO-A12F	MORN3	SNP	Missense_Mutation	12	122107317	C	T	23	77
BRCA	TCGA-AO-A12F	POSTN	SNP	Missense_Mutation	13	38172818	C	T	17	51
BRCA	TCGA-AO-A12F	UNC13C	SNP	Missense_Mutation	15	54435218	G	C	34	71
BRCA	TCGA-AO-A12F	MYH1	SNP	Missense_Mutation	17	10399397	C	T	27	100
BRCA	TCGA-AO-A12F	KRT14	SNP	Missense_Mutation	17	39742881	T	A	49	69
BRCA	TCGA-AO-A12F	KPNA2	SNP	Missense_Mutation	17	66033483	C	T	27	69
BRCA	TCGA-AO-A12F	TP53	SNP	Splice_site	17	7579312	C	G	23	57
BRCA	TCGA-AO-A12F	WRAP53	SNP	Missense_Mutation	17	7606441	G	C	40	57
BRCA	TCGA-AO-A12F	PLIN4	SNP	Missense_Mutation	19	4513446	G	A	34	43
BRCA	TCGA-AO-A12F	CLASRP	SNP	Missense_Mutation	19	45571725	G	C	38	22
BRCA	TCGA-AO-A12F	ZNF320	SNP	Missense_Mutation	19	53385122	C	G	25	33
BRCA	TCGA-AO-A12F	MYO7B	SNP	Silent	2	128386034	G	A	34	53
BRCA	TCGA-AO-A12F	ATAD2B	SNP	Missense_Mutation	2	24080330	T	C	50	93
BRCA	TCGA-AO-A12F	BTBD3	SNP	Missense_Mutation	20	11900400	C	T	27	100
BRCA	TCGA-AO-A12F	SLC37A1	SNP	Silent	21	43987159	C	A	23	26
BRCA	TCGA-AO-A12F	PACSIN2	SNP	Missense_Mutation	22	43275089	C	G	32	58
BRCA	TCGA-AO-A12F	FAM47B	SNP	Missense_Mutation	23	34960976	C	T	26	55
BRCA	TCGA-AO-A12F	CCDC22	SNP	Silent	23	49103224	G	A	33	48
BRCA	TCGA-AO-A12F	TAF1	SNP	Missense_Mutation	23	70608656	A	G	16	86
BRCA	TCGA-AO-A12F	LOC644950	DEL	Frame_Shift_Del	3	109128578	TAGT	-	49	74
BRCA	TCGA-AO-A12F	ZXDC	SNP	Missense_Mutation	3	126180635	G	T	43	61
BRCA	TCGA-AO-A12F	MKRN2	SNP	Missense_Mutation	3	12623389	G	A	37	98
BRCA	TCGA-AO-A12F	DUSP1	SNP	Silent	5	172195858	G	A	39	17
BRCA	TCGA-AO-A12F	UNC93A	SNP	Missense_Mutation	6	167728785	G	A	40	64
BRCA	TCGA-AO-A12F	NHLRC1	SNP	Missense_Mutation	6	18121861	G	A	44	81
BRCA	TCGA-AO-A12F	TG	SNP	Missense_Mutation	8	133899602	G	A	48	96
BRCA	TCGA-AO-A12G	MTOR	SNP	Nonsense_Mutation	1	11317205	C	A	30	97
BRCA	TCGA-AO-A12G	CENPF	SNP	Missense_Mutation	1	214818057	T	C	59	47
BRCA	TCGA-AO-A12G	ACOT11	SNP	Missense_Mutation	1	55059671	A	G	5	68
BRCA	TCGA-AO-A12G	COL24A1	SNP	Missense_Mutation	1	86430711	G	A	47	69
BRCA	TCGA-AO-A12G	MCMBP	DEL	Frame_Shift_Del	10	121591004	CA	-	29	50
BRCA	TCGA-AO-A12G	PCDH15	INS	In_Frame_Ins	10	55600150	-	GGTGTA	63	78
BRCA	TCGA-AO-A12G	PTEN	DEL	Frame_Shift_Del	10	89653842	G	-	35	93
BRCA	TCGA-AO-A12G	ATHL1	SNP	Missense_Mutation	11	293153	G	T	48	44
BRCA	TCGA-AO-A12G	CCDC168	SNP	Silent	13	103386196	C	T	25	51
BRCA	TCGA-AO-A12G	CYP1A2	SNP	Missense_Mutation	15	75047325	G	A	40	62
BRCA	TCGA-AO-A12G	KIAA0430	SNP	Silent	16	15718667	C	T	26	66
BRCA	TCGA-AO-A12G	DNAH3	SNP	Missense_Mutation	16	20996971	C	T	32	84
BRCA	TCGA-AO-A12G	CCDC144A	SNP	Missense_Mutation	17	16638032	A	T	12	68
BRCA	TCGA-AO-A12G	KIF2B	SNP	Missense_Mutation	17	51900732	C	T	19	64
BRCA	TCGA-AO-A12G	ABCA5	SNP	Missense_Mutation	17	67246622	C	T	19	69
BRCA	TCGA-AO-A12G	TP53	DEL	In_Frame_Del	17	7578505	GGGCAGGTCTTG	-	35	83
BRCA	TCGA-AO-A12G	DSG1	SNP	Missense_Mutation	18	28926019	G	C	41	70
BRCA	TCGA-AO-A12G	ZNF329	SNP	Missense_Mutation	19	58639594	G	A	43	82
BRCA	TCGA-AO-A12G	ERBB4	SNP	Silent	2	212289007	C	T	29	52
BRCA	TCGA-AO-A12G	DOCK10	SNP	Missense_Mutation	2	225651833	T	C	57	91
BRCA	TCGA-AO-A12G	RIMS4	SNP	Missense_Mutation	20	43384877	G	T	41	61
BRCA	TCGA-AO-A12G	BMP15	SNP	Missense_Mutation	23	50659109	G	C	47	47
BRCA	TCGA-AO-A12G	PCDHA11	SNP	Missense_Mutation	5	140250745	C	T	27	49
BRCA	TCGA-AO-A12G	ZNF131	SNP	Missense_Mutation	5	43161509	T	C	52	69
BRCA	TCGA-AO-A12G	PLG	SNP	Missense_Mutation	6	161162411	G	A	39	55
BRCA	TCGA-AO-A12G	PLXNA4	SNP	Missense_Mutation	7	132192324	C	T	22	100
BRCA	TCGA-AO-A12G	WDR60	SNP	Missense_Mutation	7	158716295	T	C	52	61
BRCA	TCGA-AO-A12G	GLI3	SNP	Missense_Mutation	7	42084998	G	A	33	98
BRCA	TCGA-AO-A12G	GLI3	SNP	Nonsense_Mutation	7	42085091	G	A	45	98
BRCA	TCGA-AO-A12G	EGFR	SNP	Missense_Mutation	7	55221773	A	G	6	71
BRCA	TCGA-AO-A12G	ZNF705G	SNP	Missense_Mutation	8	7217220	C	A	24	48
BRCA	TCGA-AO-A12G	NECAB1	SNP	Silent	8	91937790	G	A	48	58
BRCA	TCGA-AO-A12G	OR1L4	SNP	Missense_Mutation	9	125486770	T	C	58	59
BRCA	TCGA-AO-A12G	MTAP	SNP	Missense_Mutation	9	21818104	G	A	33	94
BRCA	TCGA-AO-A12G	KIAA1045	SNP	Missense_Mutation	9	34978067	C	T	31	85
BRCA	TCGA-AO-A12G	KIAA1432	SNP	Missense_Mutation	9	5773058	G	A	41	85
BRCA	TCGA-AO-A12G	KIAA1432	SNP	Missense_Mutation	9	5774097	G	C	33	84
BRCA	TCGA-AO-A12H	CACNA1E	SNP	Missense_Mutation	1	181701998	G	A	40	70
BRCA	TCGA-AO-A12H	SWT1	SNP	Missense_Mutation	1	185153956	G	A	40	61
BRCA	TCGA-AO-A12H	WDR26	SNP	Missense_Mutation	1	224607232	C	A	30	100
BRCA	TCGA-AO-A12H	CAPRIN1	SNP	Missense_Mutation	11	34113522	C	G	21	98
BRCA	TCGA-AO-A12H	KDM4D	SNP	Nonsense_Mutation	11	94730906	A	T	1	64
BRCA	TCGA-AO-A12H	ERC1	SNP	Missense_Mutation	12	1289751	A	T	11	72
BRCA	TCGA-AO-A12H	DIP2B	SNP	Missense_Mutation	12	51133229	A	C	14	91
BRCA	TCGA-AO-A12H	DPPA3	SNP	Missense_Mutation	12	7867799	G	A	37	65
BRCA	TCGA-AO-A12H	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-AO-A12H	RYR3	SNP	Missense_Mutation	15	34078003	A	G	8	79
BRCA	TCGA-AO-A12H	CSPG4	SNP	Silent	15	75982041	C	T	27	25
BRCA	TCGA-AO-A12H	SALL1	SNP	Silent	16	51175176	G	A	41	51
BRCA	TCGA-AO-A12H	PHLPP2	SNP	Missense_Mutation	16	71701217	G	A	33	72
BRCA	TCGA-AO-A12H	NF1	SNP	Missense_Mutation	17	29562668	C	T	31	83
BRCA	TCGA-AO-A12H	SLFN5	SNP	Silent	17	33592829	G	A	39	42
BRCA	TCGA-AO-A12H	MINK1	SNP	Missense_Mutation	17	4788835	T	A	52	89
BRCA	TCGA-AO-A12H	WBP2	SNP	Missense_Mutation	17	73843629	C	T	27	46
BRCA	TCGA-AO-A12H	RBM12	DEL	In_Frame_Del	20	34240797	AGGGGCACTTCCAAGACCAGG	-	7	51
BRCA	TCGA-AO-A12H	SRRD	SNP	Missense_Mutation	22	26884108	G	A	48	52
BRCA	TCGA-AO-A12H	DCAF12L2	SNP	Silent	23	125299410	G	A	39	23
BRCA	TCGA-AO-A12H	USP9X	INS	Frame_Shift_Ins	23	41084197	-	A	29	57
BRCA	TCGA-AO-A12H	C3orf18	SNP	Missense_Mutation	3	50598482	G	A	40	78
BRCA	TCGA-AO-A12H	ADGB	SNP	Missense_Mutation	6	147073842	G	A	34	86
BRCA	TCGA-AO-A12H	DNAH11	SNP	Silent	7	21639512	C	T	19	52
BRCA	TCGA-AO-A1KO	NFRKB	SNP	Silent	11	129751713	T	A	55	40
BRCA	TCGA-AO-A1KO	OSBPL5	SNP	Missense_Mutation	11	3115043	C	A	28	56
BRCA	TCGA-AO-A1KO	PPFIA1	SNP	Missense_Mutation	11	70218382	G	A	42	100
BRCA	TCGA-AO-A1KO	ADCY6	SNP	Silent	12	49167398	C	T	21	75
BRCA	TCGA-AO-A1KO	USPL1	SNP	Silent	13	31231753	A	G	6	37
BRCA	TCGA-AO-A1KO	ENTPD5	SNP	Missense_Mutation	14	74442670	A	G	2	89
BRCA	TCGA-AO-A1KO	ZSCAN2	SNP	Silent	15	85164374	C	T	25	60
BRCA	TCGA-AO-A1KO	ZNF337	DEL	Frame_Shift_Del	20	25666719	GG	-	47	52
BRCA	TCGA-AO-A1KO	ASPHD2	INS	Frame_Shift_Ins	22	26829760	-	T	28	78
BRCA	TCGA-AO-A1KO	EWSR1	SNP	Missense_Mutation	22	29694768	G	A	41	78
BRCA	TCGA-AO-A1KO	WWC3	SNP	Missense_Mutation	23	10046872	A	G	10	86
BRCA	TCGA-AO-A1KO	TLR7	SNP	Nonsense_Mutation	23	12905869	C	T	21	55
BRCA	TCGA-AO-A1KO	HCFC1	INS	Frame_Shift_Ins	23	153236144	-	A	23	90
BRCA	TCGA-AO-A1KO	WDR52	SNP	Nonsense_Mutation	3	113010507	G	T	37	44
BRCA	TCGA-AO-A1KO	NUP210	SNP	Silent	3	13418986	G	A	48	51
BRCA	TCGA-AO-A1KO	RSRC1	SNP	Missense_Mutation	3	158262060	C	T	26	86
BRCA	TCGA-AO-A1KO	LRIT3	SNP	Missense_Mutation	4	110772968	C	T	18	77
BRCA	TCGA-AO-A1KO	ZNF354C	SNP	Silent	5	178506093	A	G	4	43
BRCA	TCGA-AO-A1KO	SYNE1	SNP	Missense_Mutation	6	152454589	C	A	32	61
BRCA	TCGA-AO-A1KO	SMOC2	SNP	Missense_Mutation	6	168910728	A	T	12	85
BRCA	TCGA-AO-A1KO	TNS3	SNP	Silent	7	47408710	G	C	35	69
BRCA	TCGA-AO-A1KO	OSR2	DEL	Frame_Shift_Del	8	99963879	TG	-	55	92
BRCA	TCGA-AO-A1KO	DENND4C	SNP	Silent	9	19342689	C	T	17	54
BRCA	TCGA-AO-A1KP	KIF1B	SNP	Missense_Mutation	1	10386254	A	G	6	90
BRCA	TCGA-AO-A1KP	RBBP5	SNP	Missense_Mutation	1	205073004	G	A	40	100
BRCA	TCGA-AO-A1KP	DYRK3	SNP	Silent	1	206810308	A	G	3	54
BRCA	TCGA-AO-A1KP	SYNPO2L	SNP	Missense_Mutation	10	75406951	A	G	1	62
BRCA	TCGA-AO-A1KP	UHRF1BP1L	SNP	Missense_Mutation	12	100482869	G	A	33	72
BRCA	TCGA-AO-A1KP	FGF6	SNP	Silent	12	4554416	G	A	38	55
BRCA	TCGA-AO-A1KP	CLSTN3	SNP	Silent	12	7293852	G	A	36	52
BRCA	TCGA-AO-A1KP	RTL1	SNP	Missense_Mutation	14	101349027	T	G	57	61
BRCA	TCGA-AO-A1KP	SLC9A5	SNP	Splice_Site	16	67289834	G	A	40	100
BRCA	TCGA-AO-A1KP	CLEC18A	SNP	Missense_Mutation	16	69996928	G	A	37	61
BRCA	TCGA-AO-A1KP	DNAH17	SNP	Missense_Mutation	17	76501415	T	G	54	87
BRCA	TCGA-AO-A1KP	LAMA1	SNP	Silent	18	6959369	C	T	27	31
BRCA	TCGA-AO-A1KP	AFF3	SNP	Missense_Mutation	2	100170901	G	A	39	75
BRCA	TCGA-AO-A1KP	POTEF	SNP	Missense_Mutation	2	130832835	C	T	27	65
BRCA	TCGA-AO-A1KP	KRTAP23-1	SNP	Missense_Mutation	21	31720857	C	T	26	49
BRCA	TCGA-AO-A1KP	CACNA1F	SNP	Splice_site	23	49082871	A	T	7	53
BRCA	TCGA-AO-A1KP	MUC4	SNP	Missense_Mutation	3	195508385	C	A	24	50
BRCA	TCGA-AO-A1KP	OTUD4	SNP	Silent	4	146059245	C	T	21	62
BRCA	TCGA-AO-A1KP	ASB5	SNP	Missense_Mutation	4	177190238	G	C	37	78
BRCA	TCGA-AO-A1KP	FRYL	SNP	Missense_Mutation	4	48542474	A	C	3	94
BRCA	TCGA-AO-A1KP	PCDHA4	SNP	Silent	5	140188293	C	T	19	65
BRCA	TCGA-AO-A1KP	CMYA5	SNP	Missense_Mutation	5	79033437	G	T	42	96
BRCA	TCGA-AO-A1KP	DPY19L4	SNP	Splice_Site	8	95796032	T	A	57	82
BRCA	TCGA-AO-A1KR	VAV3	SNP	Missense_Mutation	1	108292204	T	G	49	49
BRCA	TCGA-AO-A1KR	GNAI3	SNP	Missense_Mutation	1	110121878	T	C	51	92
BRCA	TCGA-AO-A1KR	SPTA1	SNP	Splice_Site	1	158608032	C	G	24	94
BRCA	TCGA-AO-A1KR	OR6K6	SNP	Missense_Mutation	1	158725496	G	C	43	63
BRCA	TCGA-AO-A1KR	ASTN1	SNP	Missense_Mutation	1	176926869	C	A	25	97
BRCA	TCGA-AO-A1KR	SERTAD4	SNP	Missense_Mutation	1	210415039	T	C	52	80
BRCA	TCGA-AO-A1KR	TLR5	SNP	Silent	1	223286092	C	A	25	77
BRCA	TCGA-AO-A1KR	MTR	SNP	Silent	1	237015844	A	C	13	60
BRCA	TCGA-AO-A1KR	AIM1L	SNP	Missense_Mutation	1	26658074	T	C	58	66
BRCA	TCGA-AO-A1KR	PDE4B	SNP	Missense_Mutation	1	66833528	G	A	45	100
BRCA	TCGA-AO-A1KR	LRRC40	SNP	Missense_Mutation	1	70621394	G	C	45	73
BRCA	TCGA-AO-A1KR	CELF2	SNP	Missense_Mutation	10	11299805	A	C	12	79
BRCA	TCGA-AO-A1KR	SORBS1	SNP	Silent	10	97096374	C	G	21	59
BRCA	TCGA-AO-A1KR	ANKK1	DEL	In_Frame_Del	11	113269704	AGCGGGCCCTTC	-	3	60
BRCA	TCGA-AO-A1KR	SSRP1	SNP	Missense_Mutation	11	57099707	G	A	45	97
BRCA	TCGA-AO-A1KR	CERS5	SNP	Silent	12	50524370	C	G	22	48
BRCA	TCGA-AO-A1KR	APOBEC1	SNP	Silent	12	7802275	T	C	61	51
BRCA	TCGA-AO-A1KR	INTS6	SNP	Missense_Mutation	13	51948544	A	C	6	90
BRCA	TCGA-AO-A1KR	EIF2AK4	SNP	Missense_Mutation	15	40265856	T	C	62	66
BRCA	TCGA-AO-A1KR	MPG	SNP	Missense_Mutation	16	129524	G	C	34	49
BRCA	TCGA-AO-A1KR	SCNN1B	SNP	Nonsense_Mutation	16	23360076	G	A	44	86
BRCA	TCGA-AO-A1KR	PRSS27	SNP	Silent	16	2763623	G	A	48	58
BRCA	TCGA-AO-A1KR	WDR90	SNP	Missense_Mutation	16	705776	C	T	22	83
BRCA	TCGA-AO-A1KR	KIAA1609	SNP	Missense_Mutation	16	84514235	G	A	40	58
BRCA	TCGA-AO-A1KR	KRT9	SNP	Silent	17	39724452	C	T	32	48
BRCA	TCGA-AO-A1KR	BRCA1	DEL	In_Frame_Del	17	41245615	AAC	-	9	50
BRCA	TCGA-AO-A1KR	CACNG5	SNP	Silent	17	64876780	G	A	47	53
BRCA	TCGA-AO-A1KR	ITGB4	SNP	Silent	17	73723282	C	A	28	74
BRCA	TCGA-AO-A1KR	SENP3	SNP	Splice_Site	17	7468905	G	C	44	91
BRCA	TCGA-AO-A1KR	DNAH17	SNP	Missense_Mutation	17	76482127	T	A	57	90
BRCA	TCGA-AO-A1KR	SS18	SNP	Silent	18	23612480	A	G	10	48
BRCA	TCGA-AO-A1KR	DSG4	SNP	Missense_Mutation	18	28991149	T	C	55	49
BRCA	TCGA-AO-A1KR	ZNF229	SNP	Silent	19	44934254	A	G	7	51
BRCA	TCGA-AO-A1KR	HRC	SNP	Missense_Mutation	19	49656737	G	C	45	64
BRCA	TCGA-AO-A1KR	ZNF175	SNP	Silent	19	52090259	C	T	19	59
BRCA	TCGA-AO-A1KR	NLRP12	SNP	Missense_Mutation	19	54299149	C	T	23	68
BRCA	TCGA-AO-A1KR	EPS8L1	SNP	Missense_Mutation	19	55597838	C	G	23	66
BRCA	TCGA-AO-A1KR	SNTG2	SNP	Splice_site	2	1079205	C	T	19	62
BRCA	TCGA-AO-A1KR	CYBRD1	SNP	Missense_Mutation	2	172411303	C	T	28	51
BRCA	TCGA-AO-A1KR	ASNSD1	SNP	Missense_Mutation	2	190530910	G	C	33	69
BRCA	TCGA-AO-A1KR	METTL21A	SNP	Missense_Mutation	2	208477909	C	T	25	97
BRCA	TCGA-AO-A1KR	PLEKHH2	SNP	Splice_Site	2	43924309	G	C	33	89
BRCA	TCGA-AO-A1KR	RAB1A	SNP	Missense_Mutation	2	65315695	C	A	21	87
BRCA	TCGA-AO-A1KR	CTNNA2	SNP	Missense_Mutation	2	80773146	G	C	40	100
BRCA	TCGA-AO-A1KR	DNMT3L	SNP	Missense_Mutation	21	45670749	C	A	19	58
BRCA	TCGA-AO-A1KR	POTEH	SNP	Silent	22	16277852	C	T	23	49
BRCA	TCGA-AO-A1KR	SRRD	SNP	Silent	22	26884128	A	C	5	36
BRCA	TCGA-AO-A1KR	PORCN	SNP	Silent	23	48372917	C	T	24	62
BRCA	TCGA-AO-A1KR	ASTE1	SNP	Missense_Mutation	3	130743882	G	T	48	52
BRCA	TCGA-AO-A1KR	PIK3CA	SNP	Missense_Mutation	3	178951957	G	A	45	100
BRCA	TCGA-AO-A1KR	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AO-A1KR	RASL11B	SNP	Silent	4	53731600	C	T	28	73
BRCA	TCGA-AO-A1KR	HERC3	SNP	Missense_Mutation	4	89577057	G	A	47	97
BRCA	TCGA-AO-A1KR	PCDHB8	SNP	Missense_Mutation	5	140558924	A	T	5	62
BRCA	TCGA-AO-A1KR	FBXL7	SNP	Silent	5	15500794	G	C	37	61
BRCA	TCGA-AO-A1KR	ZFR	SNP	Missense_Mutation	5	32420120	C	A	20	98
BRCA	TCGA-AO-A1KR	DMGDH	SNP	Missense_Mutation	5	78338302	A	T	1	90
BRCA	TCGA-AO-A1KR	TNFAIP3	SNP	Missense_Mutation	6	138197148	G	C	36	99
BRCA	TCGA-AO-A1KR	STK31	SNP	Missense_Mutation	7	23827704	C	T	23	91
BRCA	TCGA-AO-A1KR	RIMS2	SNP	Missense_Mutation	8	104897774	G	A	34	53
BRCA	TCGA-AO-A1KR	FAM49B	SNP	Missense_Mutation	8	130891704	C	A	22	97
BRCA	TCGA-AO-A1KR	KIAA1429	SNP	Missense_Mutation	8	95504889	A	T	16	89
BRCA	TCGA-AO-A1KR	C9orf163	SNP	Nonsense_Mutation	9	139379382	G	A	47	48
BRCA	TCGA-AO-A1KS	TDRKH	SNP	Silent	1	151751327	G	A	48	53
BRCA	TCGA-AO-A1KS	TDRD10	SNP	Missense_Mutation	1	154493890	G	A	40	47
BRCA	TCGA-AO-A1KS	TIPRL	SNP	Missense_Mutation	1	168165856	G	A	45	73
BRCA	TCGA-AO-A1KS	PLA2G4A	SNP	Missense_Mutation	1	186934718	C	T	23	96
BRCA	TCGA-AO-A1KS	OR14K1	SNP	Missense_Mutation	1	247902751	G	A	38	42
BRCA	TCGA-AO-A1KS	SYCE1	SNP	Missense_Mutation	10	135373612	A	C	6	59
BRCA	TCGA-AO-A1KS	SUV420H1	SNP	Missense_Mutation	11	67941347	T	A	55	91
BRCA	TCGA-AO-A1KS	IGHMBP2	SNP	Missense_Mutation	11	68678993	C	T	29	56
BRCA	TCGA-AO-A1KS	ANAPC7	SNP	Missense_Mutation	12	110834204	G	A	33	99
BRCA	TCGA-AO-A1KS	KNTC1	DEL	Splice_site	12	123073362	AAGT	-	1	75
BRCA	TCGA-AO-A1KS	LRRIQ1	SNP	Missense_Mutation	12	85515540	C	T	29	60
BRCA	TCGA-AO-A1KS	CD69	SNP	Silent	12	9907739	C	T	29	40
BRCA	TCGA-AO-A1KS	B3GALTL	SNP	Missense_Mutation	13	31903672	C	T	32	100
BRCA	TCGA-AO-A1KS	ARHGAP11A	SNP	Silent	15	32908481	G	A	45	48
BRCA	TCGA-AO-A1KS	ISLR2	SNP	Missense_Mutation	15	74425574	G	A	40	82
BRCA	TCGA-AO-A1KS	PTPN9	SNP	Silent	15	75815503	T	C	57	45
BRCA	TCGA-AO-A1KS	ITGAD	SNP	Missense_Mutation	16	31424208	C	T	27	73
BRCA	TCGA-AO-A1KS	CDH1	SNP	Nonsense_Mutation	16	68772254	G	T	37	57
BRCA	TCGA-AO-A1KS	ANKRD11	SNP	Missense_Mutation	16	89350800	G	A	45	64
BRCA	TCGA-AO-A1KS	MYOCD	SNP	Nonsense_Mutation	17	12655755	C	T	31	63
BRCA	TCGA-AO-A1KS	RUNDC3A	SNP	Missense_Mutation	17	42390802	G	A	39	91
BRCA	TCGA-AO-A1KS	UBE2O	SNP	Silent	17	74401326	G	A	45	60
BRCA	TCGA-AO-A1KS	PLEKHG2	SNP	Missense_Mutation	19	39905706	G	C	43	68
BRCA	TCGA-AO-A1KS	CLK1	SNP	Missense_Mutation	2	201726041	A	C	10	67
BRCA	TCGA-AO-A1KS	GBX2	SNP	Missense_Mutation	2	237074835	C	T	31	96
BRCA	TCGA-AO-A1KS	CYYR1	SNP	Silent	21	27840937	G	A	40	43
BRCA	TCGA-AO-A1KS	MX2	SNP	Silent	21	42770841	A	G	15	46
BRCA	TCGA-AO-A1KS	WDR44	SNP	Silent	23	117577583	C	G	24	41
BRCA	TCGA-AO-A1KS	RBBP7	SNP	Missense_Mutation	23	16871848	C	G	31	96
BRCA	TCGA-AO-A1KS	TNMD	SNP	Missense_Mutation	23	99849000	G	A	45	79
BRCA	TCGA-AO-A1KS	COL6A6	SNP	Missense_Mutation	3	130290018	G	A	37	98
BRCA	TCGA-AO-A1KS	TFDP2	SNP	Missense_Mutation	3	141671811	A	G	11	66
BRCA	TCGA-AO-A1KS	FGB	SNP	Missense_Mutation	4	155490686	G	A	45	100
BRCA	TCGA-AO-A1KS	CSN2	SNP	Silent	4	70823234	G	A	33	53
BRCA	TCGA-AO-A1KS	SEMA6A	SNP	Silent	5	115782666	G	A	40	50
BRCA	TCGA-AO-A1KS	MTRR	SNP	Missense_Mutation	5	7878145	A	C	3	57
BRCA	TCGA-AO-A1KS	SEC63	SNP	Missense_Mutation	6	108218930	C	G	32	96
BRCA	TCGA-AO-A1KS	LPA	SNP	Silent	6	161056225	G	A	40	33
BRCA	TCGA-AO-A1KS	PCLO	SNP	Nonsense_Mutation	7	82784867	G	A	45	66
BRCA	TCGA-AO-A1KS	WHSC1L1	SNP	Missense_Mutation	8	38146045	C	T	23	88
BRCA	TCGA-AO-A1KS	CTNNAL1	SNP	Missense_Mutation	9	111741679	C	T	19	54
BRCA	TCGA-AO-A1KT	MCM10	SNP	Missense_Mutation	10	13222513	T	A	50	93
BRCA	TCGA-AO-A1KT	ATM	DEL	Splice_Site	11	108160511	TCACTATATCAACCAAAGGTAAATAACA	-	62	61
BRCA	TCGA-AO-A1KT	IL18	SNP	Missense_Mutation	11	112020809	T	A	50	71
BRCA	TCGA-AO-A1KT	IL18BP	SNP	Silent	11	71712520	G	A	46	54
BRCA	TCGA-AO-A1KT	NDUFA9	SNP	Missense_Mutation	12	4796146	G	A	33	77
BRCA	TCGA-AO-A1KT	MLL2	SNP	Silent	12	49445333	C	T	23	16
BRCA	TCGA-AO-A1KT	MYH6	SNP	Missense_Mutation	14	23855313	C	A	18	51
BRCA	TCGA-AO-A1KT	IL4R	SNP	Missense_Mutation	16	27374816	G	C	34	51
BRCA	TCGA-AO-A1KT	XPO6	SNP	Silent	16	28177893	A	C	7	55
BRCA	TCGA-AO-A1KT	ADCY9	SNP	Missense_Mutation	16	4042196	T	G	51	69
BRCA	TCGA-AO-A1KT	FZD2	SNP	Missense_Mutation	17	42636438	G	A	38	99
BRCA	TCGA-AO-A1KT	USH1G	SNP	Silent	17	72916430	G	A	38	73
BRCA	TCGA-AO-A1KT	MBD3	SNP	Silent	19	1585126	C	T	23	41
BRCA	TCGA-AO-A1KT	QPCTL	SNP	Missense_Mutation	19	46198833	A	C	6	58
BRCA	TCGA-AO-A1KT	NLRP2	SNP	Nonsense_Mutation	19	55489137	C	T	19	31
BRCA	TCGA-AO-A1KT	PIKFYVE	SNP	Missense_Mutation	2	209136284	C	G	28	64
BRCA	TCGA-AO-A1KT	TTC7A	SNP	Missense_Mutation	2	47249043	G	A	39	69
BRCA	TCGA-AO-A1KT	SLC4A5	SNP	Silent	2	74475491	G	A	37	48
BRCA	TCGA-AO-A1KT	KANSL3	SNP	Silent	2	97276810	G	C	42	45
BRCA	TCGA-AO-A1KT	GNAS	INS	Frame_Shift_Ins	20	57430146	-	C	38	49
BRCA	TCGA-AO-A1KT	SCRT2	SNP	Missense_Mutation	20	656217	A	T	12	58
BRCA	TCGA-AO-A1KT	BRWD1	SNP	Silent	21	40571242	T	C	57	42
BRCA	TCGA-AO-A1KT	PIWIL3	SNP	Missense_Mutation	22	25124287	A	T	16	54
BRCA	TCGA-AO-A1KT	PPARA	SNP	Missense_Mutation	22	46627967	G	T	46	67
BRCA	TCGA-AO-A1KT	DMD	SNP	Nonsense_Mutation	23	32459415	C	T	21	93
BRCA	TCGA-AO-A1KT	PORCN	SNP	Silent	23	48368217	C	A	24	54
BRCA	TCGA-AO-A1KT	HDAC6	SNP	Missense_Mutation	23	48682594	A	G	8	46
BRCA	TCGA-AO-A1KT	CD200R1L	SNP	Silent	3	112546236	A	G	6	49
BRCA	TCGA-AO-A1KT	ZNF445	SNP	Missense_Mutation	3	44488743	C	A	31	61
BRCA	TCGA-AO-A1KT	DNAH12	DEL	Frame_Shift_Del	3	57458383	TTTGGCGTTTAGATTCCTACAAAAGAAAC	-	52	62
BRCA	TCGA-AO-A1KT	NPY1R	SNP	Nonsense_Mutation	4	164247179	G	C	44	57
BRCA	TCGA-AO-A1KT	ZNF721	SNP	Missense_Mutation	4	436212	T	C	51	48
BRCA	TCGA-AO-A1KT	UGT2A1	SNP	Silent	4	70460341	G	C	41	49
BRCA	TCGA-AO-A1KT	GRM6	SNP	Missense_Mutation	5	178416347	C	T	27	92
BRCA	TCGA-AO-A1KT	ENC1	SNP	Silent	5	73931216	G	A	40	45
BRCA	TCGA-AO-A1KT	ENC1	SNP	Missense_Mutation	5	73931919	T	A	58	94
BRCA	TCGA-AO-A1KT	SSBP2	SNP	Silent	5	81046829	G	C	39	56
BRCA	TCGA-AO-A1KT	ZFPM2	SNP	Silent	8	106815010	C	T	27	44
BRCA	TCGA-AO-A1KT	MFHAS1	SNP	Missense_Mutation	8	8747876	T	C	57	71
BRCA	TCGA-AO-A1KT	PLEKHF2	SNP	Missense_Mutation	8	96166631	C	T	29	85
BRCA	TCGA-AO-A1KT	MTERFD1	SNP	Silent	8	97258550	T	C	60	55
BRCA	TCGA-AO-A1KT	ANKRD20A4	SNP	Silent	9	69421946	T	C	49	55
BRCA	TCGA-AO-A1KT	TRPM6	SNP	Missense_Mutation	9	77339648	C	T	29	66
BRCA	TCGA-AO-A1KT	TLE1	SNP	Splice_site	9	84202743	C	A	26	87
BRCA	TCGA-AQ-A04H	AMPD1	SNP	Splice_Site	1	115220952	A	G	14	91
BRCA	TCGA-AQ-A04H	UQCRHL	SNP	Silent	1	16134040	C	T	28	60
BRCA	TCGA-AQ-A04H	MAEL	SNP	Missense_Mutation	1	166990949	G	A	40	76
BRCA	TCGA-AQ-A04H	CFHR5	SNP	Silent	1	196967316	G	A	34	39
BRCA	TCGA-AQ-A04H	RYR2	SNP	Missense_Mutation	1	237551480	G	A	39	91
BRCA	TCGA-AQ-A04H	MAP1LC3C	SNP	Missense_Mutation	1	242159611	T	A	60	73
BRCA	TCGA-AQ-A04H	TMEM57	SNP	Missense_Mutation	1	25783154	C	T	22	96
BRCA	TCGA-AQ-A04H	GATA3	INS	Frame_Shift_Ins	10	8115878	-	T	24	43
BRCA	TCGA-AQ-A04H	RIC8A	SNP	Missense_Mutation	11	212446	G	C	40	76
BRCA	TCGA-AQ-A04H	NAT10	SNP	Missense_Mutation	11	34160944	G	T	39	100
BRCA	TCGA-AQ-A04H	PGAP2	SNP	Missense_Mutation	11	3845298	C	T	31	42
BRCA	TCGA-AQ-A04H	PPFIA1	SNP	Missense_Mutation	11	70202345	G	A	40	85
BRCA	TCGA-AQ-A04H	EPS8	SNP	Missense_Mutation	12	15800121	T	C	59	51
BRCA	TCGA-AQ-A04H	PDE3A	SNP	Missense_Mutation	12	20766410	G	A	40	99
BRCA	TCGA-AQ-A04H	RND1	SNP	Missense_Mutation	12	49251827	G	C	33	74
BRCA	TCGA-AQ-A04H	CEP290	SNP	Missense_Mutation	12	88442981	C	T	17	44
BRCA	TCGA-AQ-A04H	ATP11A	SNP	Nonsense_Mutation	13	113439503	G	T	41	78
BRCA	TCGA-AQ-A04H	F7	SNP	Silent	13	113771834	C	T	29	42
BRCA	TCGA-AQ-A04H	NIN	SNP	Nonsense_Mutation	14	51237255	G	A	38	63
BRCA	TCGA-AQ-A04H	OTX2	SNP	Nonsense_Mutation	14	57269058	G	A	37	82
BRCA	TCGA-AQ-A04H	NRXN3	SNP	Missense_Mutation	14	80328161	G	A	41	100
BRCA	TCGA-AQ-A04H	FLRT2	SNP	Missense_Mutation	14	86089263	C	T	27	75
BRCA	TCGA-AQ-A04H	CLDN6	SNP	Missense_Mutation	16	3065517	G	A	38	78
BRCA	TCGA-AQ-A04H	ITGAD	SNP	Silent	16	31424209	G	A	38	32
BRCA	TCGA-AQ-A04H	GLYR1	DEL	Frame_Shift_Del	16	4864567	AGGCGAA	-	7	90
BRCA	TCGA-AQ-A04H	ZNF778	SNP	Missense_Mutation	16	89291996	G	A	39	44
BRCA	TCGA-AQ-A04H	MYO1D	SNP	Missense_Mutation	17	30980907	C	T	23	94
BRCA	TCGA-AQ-A04H	RDM1	SNP	Missense_Mutation	17	34249590	C	A	17	72
BRCA	TCGA-AQ-A04H	KCNH4	SNP	Missense_Mutation	17	40322182	C	T	19	96
BRCA	TCGA-AQ-A04H	TEX14	SNP	Missense_Mutation	17	56690897	C	T	23	71
BRCA	TCGA-AQ-A04H	CA4	SNP	Missense_Mutation	17	58234014	G	A	38	14
BRCA	TCGA-AQ-A04H	TP53	SNP	Missense_Mutation	17	7578259	A	C	6	76
BRCA	TCGA-AQ-A04H	DSEL	SNP	Missense_Mutation	18	65180278	G	A	38	66
BRCA	TCGA-AQ-A04H	ANKRD12	SNP	Missense_Mutation	18	9195691	A	G	10	86
BRCA	TCGA-AQ-A04H	CYP4F12	SNP	Missense_Mutation	19	15784437	G	A	38	55
BRCA	TCGA-AQ-A04H	NLRP9	SNP	Silent	19	56243838	G	A	39	35
BRCA	TCGA-AQ-A04H	SULT1C3	SNP	Missense_Mutation	2	108863661	T	C	52	39
BRCA	TCGA-AQ-A04H	GPR17	SNP	Missense_Mutation	2	128409054	G	A	40	69
BRCA	TCGA-AQ-A04H	SCN2A	SNP	Silent	2	166245632	C	A	31	49
BRCA	TCGA-AQ-A04H	VIL1	SNP	Missense_Mutation	2	219295614	C	T	27	49
BRCA	TCGA-AQ-A04H	DGKD	SNP	Missense_Mutation	2	234357797	G	A	37	84
BRCA	TCGA-AQ-A04H	SGK2	SNP	Missense_Mutation	20	42195142	T	C	54	57
BRCA	TCGA-AQ-A04H	KCNB1	SNP	Missense_Mutation	20	47989776	G	A	43	82
BRCA	TCGA-AQ-A04H	CDS2	SNP	Missense_Mutation	20	5157348	G	A	40	96
BRCA	TCGA-AQ-A04H	RAE1	SNP	Missense_Mutation	20	55953115	G	A	40	79
BRCA	TCGA-AQ-A04H	KRTAP20-3	SNP	Missense_Mutation	21	32015215	A	G	14	51
BRCA	TCGA-AQ-A04H	MAGEC2	SNP	Missense_Mutation	23	141290906	G	C	42	56
BRCA	TCGA-AQ-A04H	GPR64	SNP	Missense_Mutation	23	19017274	C	A	32	74
BRCA	TCGA-AQ-A04H	SHOX	SNP	Silent	23	591785	G	A	40	64
BRCA	TCGA-AQ-A04H	ZPLD1	SNP	Missense_Mutation	3	102171957	T	G	56	71
BRCA	TCGA-AQ-A04H	PLSCR2	SNP	Missense_Mutation	3	146171913	T	G	49	83
BRCA	TCGA-AQ-A04H	TNFSF10	SNP	Silent	3	172224441	A	G	2	45
BRCA	TCGA-AQ-A04H	DGKG	SNP	Missense_Mutation	3	185969589	C	T	18	84
BRCA	TCGA-AQ-A04H	SCN10A	SNP	Missense_Mutation	3	38793791	G	T	46	67
BRCA	TCGA-AQ-A04H	CNGA1	SNP	Silent	4	47938686	G	A	36	54
BRCA	TCGA-AQ-A04H	FNIP1	SNP	Silent	5	130769161	G	A	40	54
BRCA	TCGA-AQ-A04H	PCDHA7	SNP	Missense_Mutation	5	140215374	C	T	23	61
BRCA	TCGA-AQ-A04H	PCDHB11	SNP	Missense_Mutation	5	140580102	G	T	39	49
BRCA	TCGA-AQ-A04H	PCDHGA5	SNP	Missense_Mutation	5	140745927	G	A	36	56
BRCA	TCGA-AQ-A04H	COL19A1	SNP	Nonsense_Mutation	6	70840095	G	T	47	47
BRCA	TCGA-AQ-A04H	RABGEF1	SNP	Missense_Mutation	7	66270205	A	G	4	53
BRCA	TCGA-AQ-A04H	OXR1	SNP	Missense_Mutation	8	107696538	T	G	57	89
BRCA	TCGA-AQ-A04H	COL22A1	SNP	Missense_Mutation	8	139697498	C	T	25	50
BRCA	TCGA-AQ-A04H	EIF2C2	SNP	Missense_Mutation	8	141549439	A	T	7	91
BRCA	TCGA-AQ-A04H	CSMD1	SNP	Missense_Mutation	8	3015484	C	T	19	59
BRCA	TCGA-AQ-A04H	PXDNL	SNP	Missense_Mutation	8	52359611	G	A	37	64
BRCA	TCGA-AQ-A04H	MRPL15	SNP	Missense_Mutation	8	55060178	C	G	25	97
BRCA	TCGA-AQ-A04H	TYRP1	DEL	Frame_Shift_Del	9	12702411	ACAA	-	14	74
BRCA	TCGA-AQ-A04H	C9orf171	SNP	Silent	9	135374976	G	A	41	54
BRCA	TCGA-AQ-A04H	NPR2	SNP	Missense_Mutation	9	35792632	C	G	32	77
BRCA	TCGA-AQ-A04H	IPPK	SNP	Silent	9	95378177	G	A	40	41
BRCA	TCGA-AQ-A04J	ANP32E	SNP	Silent	1	150202960	G	C	35	51
BRCA	TCGA-AQ-A04J	ATP1A2	SNP	Missense_Mutation	1	160098503	A	G	11	88
BRCA	TCGA-AQ-A04J	ANO5	SNP	Missense_Mutation	11	22294371	C	A	30	77
BRCA	TCGA-AQ-A04J	LRRC4C	SNP	Missense_Mutation	11	40136678	G	C	41	100
BRCA	TCGA-AQ-A04J	CRY2	SNP	Silent	11	45880386	A	T	15	64
BRCA	TCGA-AQ-A04J	OR4A15	SNP	Missense_Mutation	11	55135556	C	T	19	62
BRCA	TCGA-AQ-A04J	LRRC16B	SNP	Missense_Mutation	14	24534915	G	A	39	76
BRCA	TCGA-AQ-A04J	GZMH	SNP	Missense_Mutation	14	25075891	T	A	60	44
BRCA	TCGA-AQ-A04J	NIN	SNP	Silent	14	51228556	T	C	60	49
BRCA	TCGA-AQ-A04J	NIN	SNP	Splice_Site	14	51238049	C	A	17	96
BRCA	TCGA-AQ-A04J	TSR1	SNP	Missense_Mutation	17	2236988	T	C	50	46
BRCA	TCGA-AQ-A04J	TP53	SNP	Missense_Mutation	17	7579355	A	G	7	84
BRCA	TCGA-AQ-A04J	ZNF878	SNP	Missense_Mutation	19	12154855	T	A	56	46
BRCA	TCGA-AQ-A04J	OR1I1	SNP	Missense_Mutation	19	15198108	G	A	40	54
BRCA	TCGA-AQ-A04J	PDE4C	SNP	Missense_Mutation	19	18332958	A	T	11	86
BRCA	TCGA-AQ-A04J	SYNGR4	SNP	Missense_Mutation	19	48879441	C	T	22	58
BRCA	TCGA-AQ-A04J	XIRP2	SNP	Missense_Mutation	2	168101657	A	G	1	61
BRCA	TCGA-AQ-A04J	BZW1	SNP	Missense_Mutation	2	201683608	C	G	26	100
BRCA	TCGA-AQ-A04J	OBSL1	SNP	Silent	2	220432023	G	A	40	50
BRCA	TCGA-AQ-A04J	AQP12A	SNP	Missense_Mutation	2	241631442	G	A	38	64
BRCA	TCGA-AQ-A04J	SUPT7L	SNP	Silent	2	27876562	C	T	28	55
BRCA	TCGA-AQ-A04J	SRBD1	SNP	Silent	2	45812872	G	A	47	56
BRCA	TCGA-AQ-A04J	ALMS1	SNP	Missense_Mutation	2	73675332	C	T	18	51
BRCA	TCGA-AQ-A04J	TRPC4AP	SNP	Silent	20	33623023	G	A	41	54
BRCA	TCGA-AQ-A04J	GPCPD1	SNP	Silent	20	5556511	A	C	11	48
BRCA	TCGA-AQ-A04J	SON	SNP	Silent	21	34922545	G	T	38	53
BRCA	TCGA-AQ-A04J	CXorf64	SNP	Missense_Mutation	23	125955269	G	T	43	44
BRCA	TCGA-AQ-A04J	KCND1	SNP	Missense_Mutation	23	48825777	C	G	27	96
BRCA	TCGA-AQ-A04J	UBA5	SNP	Missense_Mutation	3	132379431	G	A	39	53
BRCA	TCGA-AQ-A04J	ZNF518B	SNP	Missense_Mutation	4	10447420	T	A	55	90
BRCA	TCGA-AQ-A04J	LARP7	SNP	Missense_Mutation	4	113567531	C	A	32	80
BRCA	TCGA-AQ-A04J	DCHS2	SNP	Missense_Mutation	4	155160373	A	C	9	58
BRCA	TCGA-AQ-A04J	ISOC1	SNP	Nonsense_Mutation	5	128448599	C	T	29	92
BRCA	TCGA-AQ-A04J	SOBP	SNP	Nonsense_Mutation	6	107908293	G	T	45	96
BRCA	TCGA-AQ-A04J	MUC21	SNP	Silent	6	30955398	C	A	29	62
BRCA	TCGA-AQ-A04J	FOXP4	DEL	Frame_Shift_Del	6	41557744	TC	-	58	72
BRCA	TCGA-AQ-A04J	OXR1	SNP	Missense_Mutation	8	107718659	A	C	10	51
BRCA	TCGA-AQ-A04J	CYP7B1	SNP	Missense_Mutation	8	65528565	G	T	46	47
BRCA	TCGA-AQ-A04J	ERMP1	SNP	Missense_Mutation	9	5805716	C	A	17	51
BRCA	TCGA-AQ-A04L	SLC5A9	SNP	Nonsense_Mutation	1	48698155	C	T	29	78
BRCA	TCGA-AQ-A04L	RPAP2	DEL	Frame_Shift_Del	1	92801915	T	-	56	75
BRCA	TCGA-AQ-A04L	ENTPD7	DEL	Frame_Shift_Del	10	101462392	G	-	47	53
BRCA	TCGA-AQ-A04L	KCNMA1	SNP	Missense_Mutation	10	78787645	A	G	6	69
BRCA	TCGA-AQ-A04L	SFTPA1	SNP	Silent	10	81372138	C	T	30	47
BRCA	TCGA-AQ-A04L	RNLS	SNP	Nonsense_Mutation	10	90122432	G	A	37	90
BRCA	TCGA-AQ-A04L	DNAH10	SNP	Missense_Mutation	12	124265682	T	A	58	38
BRCA	TCGA-AQ-A04L	KCNA6	SNP	Missense_Mutation	12	4919736	G	A	38	97
BRCA	TCGA-AQ-A04L	PHC1B	SNP	Missense_Mutation	12	55807465	G	T	44	52
BRCA	TCGA-AQ-A04L	ANKRD52	SNP	Silent	12	56646569	G	A	39	51
BRCA	TCGA-AQ-A04L	RBM23	SNP	Missense_Mutation	14	23374208	C	A	31	86
BRCA	TCGA-AQ-A04L	C14orf38	SNP	Missense_Mutation	14	60004781	T	C	60	23
BRCA	TCGA-AQ-A04L	SIX1	SNP	Silent	14	61113136	G	A	40	54
BRCA	TCGA-AQ-A04L	IL16	SNP	Silent	15	81598849	C	T	19	40
BRCA	TCGA-AQ-A04L	APOBR	SNP	Missense_Mutation	16	28508338	C	T	27	53
BRCA	TCGA-AQ-A04L	ZNF720	SNP	Nonsense_Mutation	16	31734054	C	A	19	55
BRCA	TCGA-AQ-A04L	CSH2	SNP	Missense_Mutation	17	61950968	C	T	25	50
BRCA	TCGA-AQ-A04L	TP53	SNP	Missense_Mutation	17	7578271	T	C	51	76
BRCA	TCGA-AQ-A04L	SWSAP1	DEL	Frame_Shift_Del	19	11485555	CAAAG	-	29	74
BRCA	TCGA-AQ-A04L	CALR	SNP	Missense_Mutation	19	13054630	A	G	11	89
BRCA	TCGA-AQ-A04L	PSMD8	SNP	Missense_Mutation	19	38872860	G	A	38	82
BRCA	TCGA-AQ-A04L	CYP2A13	SNP	Silent	19	41596335	C	T	24	51
BRCA	TCGA-AQ-A04L	TMIGD2	SNP	Silent	19	4298146	G	A	38	40
BRCA	TCGA-AQ-A04L	PLIN5	SNP	Silent	19	4529859	G	A	37	33
BRCA	TCGA-AQ-A04L	KLK5	SNP	Missense_Mutation	19	51453283	C	T	23	31
BRCA	TCGA-AQ-A04L	HTR2B	DEL	Frame_Shift_Del	2	231973672	A	-	13	52
BRCA	TCGA-AQ-A04L	L1CAM	SNP	Silent	23	153134370	C	T	19	35
BRCA	TCGA-AQ-A04L	GAGE10	SNP	Missense_Mutation	23	49173740	C	G	30	51
BRCA	TCGA-AQ-A04L	PHF8	DEL	Frame_Shift_Del	23	54029058	AA	-	13	89
BRCA	TCGA-AQ-A04L	NHSL2	SNP	Missense_Mutation	23	71359877	G	T	37	93
BRCA	TCGA-AQ-A04L	SCN5A	SNP	Missense_Mutation	3	38601670	C	T	19	97
BRCA	TCGA-AQ-A04L	CACNA2D2	SNP	Missense_Mutation	3	50404289	G	C	44	72
BRCA	TCGA-AQ-A04L	ZBTB49	DEL	Frame_Shift_Del	4	4304086	C	-	30	46
BRCA	TCGA-AQ-A04L	YTHDC1	DEL	In_Frame_Del	4	69202888	TCTTCCTCCTCCTCC	-	62	85
BRCA	TCGA-AQ-A04L	PDGFRB	SNP	Silent	5	149504348	C	T	23	40
BRCA	TCGA-AQ-A04L	GABRA6	SNP	Missense_Mutation	5	161128618	C	A	18	57
BRCA	TCGA-AQ-A04L	CEP85L	SNP	Silent	6	118953701	A	G	12	55
BRCA	TCGA-AQ-A04L	OLIG3	SNP	Missense_Mutation	6	137815024	C	T	23	100
BRCA	TCGA-AQ-A04L	FLNC	SNP	Missense_Mutation	7	128475401	G	A	43	86
BRCA	TCGA-AQ-A04L	SSPO	SNP	Splice_site	7	149500315	A	C	10	59
BRCA	TCGA-AQ-A04L	NT5C3	SNP	Missense_Mutation	7	33075569	C	G	32	79
BRCA	TCGA-AQ-A04L	CYP3A4	SNP	Missense_Mutation	7	99367407	G	A	42	47
BRCA	TCGA-AQ-A04L	UBR5	SNP	Nonsense_Mutation	8	103271312	C	A	32	100
BRCA	TCGA-AQ-A04L	KIAA1456	SNP	Missense_Mutation	8	12878609	G	A	40	98
BRCA	TCGA-AQ-A04L	GAPVD1	SNP	Missense_Mutation	9	128061273	C	A	17	100
BRCA	TCGA-AQ-A04L	ALDH1A1	SNP	Silent	9	75516163	G	C	45	54
BRCA	TCGA-AQ-A0Y5	AGL	SNP	Splice_Site	1	100350009	T	C	57	90
BRCA	TCGA-AQ-A0Y5	ZNF281	SNP	Silent	1	200377724	G	C	45	87
BRCA	TCGA-AQ-A0Y5	CACNA1S	SNP	Silent	1	201038705	G	T	37	47
BRCA	TCGA-AQ-A0Y5	CNST	SNP	Missense_Mutation	1	246805311	G	C	35	53
BRCA	TCGA-AQ-A0Y5	OR2L13	SNP	Silent	1	248262902	C	A	21	52
BRCA	TCGA-AQ-A0Y5	ZNF642	SNP	Missense_Mutation	1	40961166	G	A	38	65
BRCA	TCGA-AQ-A0Y5	ZCCHC11	SNP	Missense_Mutation	1	52891167	C	T	31	65
BRCA	TCGA-AQ-A0Y5	LRP8	SNP	Missense_Mutation	1	53729901	C	T	27	57
BRCA	TCGA-AQ-A0Y5	GBP5	SNP	Missense_Mutation	1	89729432	C	T	23	61
BRCA	TCGA-AQ-A0Y5	PPRC1	SNP	Missense_Mutation	10	103899095	A	C	8	58
BRCA	TCGA-AQ-A0Y5	DSCAML1	SNP	Silent	11	117306505	T	C	59	42
BRCA	TCGA-AQ-A0Y5	PTDSS2	SNP	Missense_Mutation	11	489687	G	A	40	94
BRCA	TCGA-AQ-A0Y5	UBQLN3	SNP	Missense_Mutation	11	5529582	T	G	52	55
BRCA	TCGA-AQ-A0Y5	OR5AK2	SNP	Splice_site	11	56756390	T	C	51	65
BRCA	TCGA-AQ-A0Y5	SLC22A6	SNP	Missense_Mutation	11	62751063	G	A	39	73
BRCA	TCGA-AQ-A0Y5	EPS8	SNP	Nonsense_Mutation	12	15777330	G	A	45	77
BRCA	TCGA-AQ-A0Y5	CACNA1C	SNP	Silent	12	2602510	C	T	30	62
BRCA	TCGA-AQ-A0Y5	CKAP2	SNP	Missense_Mutation	13	53049138	G	T	46	53
BRCA	TCGA-AQ-A0Y5	MYH6	SNP	Missense_Mutation	14	23863422	G	A	40	98
BRCA	TCGA-AQ-A0Y5	RYR3	SNP	Missense_Mutation	15	33858967	G	A	39	74
BRCA	TCGA-AQ-A0Y5	C15orf44	SNP	Missense_Mutation	15	65884055	C	T	30	100
BRCA	TCGA-AQ-A0Y5	RAB11A	SNP	Missense_Mutation	15	66161954	C	T	24	72
BRCA	TCGA-AQ-A0Y5	VWA3A	SNP	Silent	16	22122217	C	T	31	38
BRCA	TCGA-AQ-A0Y5	HMOX2	SNP	Missense_Mutation	16	4558020	G	A	42	99
BRCA	TCGA-AQ-A0Y5	C17orf85	SNP	Missense_Mutation	17	3725313	C	G	20	81
BRCA	TCGA-AQ-A0Y5	RHPN2	SNP	Silent	19	33493752	G	A	45	53
BRCA	TCGA-AQ-A0Y5	THSD7B	SNP	Silent	2	138373750	C	T	27	53
BRCA	TCGA-AQ-A0Y5	RALY	SNP	Missense_Mutation	20	32661659	G	A	37	68
BRCA	TCGA-AQ-A0Y5	PIK3CA	SNP	Missense_Mutation	3	178928079	G	A	33	98
BRCA	TCGA-AQ-A0Y5	DNAH1	SNP	Silent	3	52365312	G	T	43	48
BRCA	TCGA-AQ-A0Y5	CACNA1D	SNP	Missense_Mutation	3	53810978	T	A	59	93
BRCA	TCGA-AQ-A0Y5	ADAMTS9	SNP	Missense_Mutation	3	64666930	C	T	27	48
BRCA	TCGA-AQ-A0Y5	OR5K2	SNP	Missense_Mutation	3	98217306	G	A	33	50
BRCA	TCGA-AQ-A0Y5	FAM190A	SNP	Missense_Mutation	4	91549368	G	C	33	73
BRCA	TCGA-AQ-A0Y5	PCDHGB1	SNP	Silent	5	140730085	G	A	41	51
BRCA	TCGA-AQ-A0Y5	LAMA2	SNP	Splice_site	6	129823915	C	T	23	67
BRCA	TCGA-AQ-A0Y5	SLC22A1	SNP	Missense_Mutation	6	160543262	G	A	38	49
BRCA	TCGA-AQ-A0Y5	TINAG	SNP	Missense_Mutation	6	54214608	C	T	19	54
BRCA	TCGA-AQ-A0Y5	MUC12	SNP	Missense_Mutation	7	100648354	C	T	29	60
BRCA	TCGA-AQ-A0Y5	THSD7A	SNP	Missense_Mutation	7	11630106	A	T	14	51
BRCA	TCGA-AQ-A0Y5	CUL1	SNP	Missense_Mutation	7	148457520	G	C	33	94
BRCA	TCGA-AQ-A0Y5	TNS3	SNP	Missense_Mutation	7	47408046	G	C	41	55
BRCA	TCGA-AQ-A0Y5	TMEM71	SNP	Missense_Mutation	8	133764157	C	T	31	76
BRCA	TCGA-AQ-A0Y5	LOXL2	SNP	Missense_Mutation	8	23217687	C	G	28	58
BRCA	TCGA-AQ-A1H2	SPEN	INS	Frame_Shift_Ins	1	16261272	-	CT	9	89
BRCA	TCGA-AQ-A1H2	CLSPN	SNP	Nonsense_Mutation	1	36204752	G	A	37	70
BRCA	TCGA-AQ-A1H2	COL9A2	SNP	Silent	1	40778134	T	A	58	72
BRCA	TCGA-AQ-A1H2	DCLRE1A	SNP	Silent	10	115607027	T	C	59	50
BRCA	TCGA-AQ-A1H2	DYNC2H1	SNP	Silent	11	102991220	A	C	14	53
BRCA	TCGA-AQ-A1H2	LPCAT4	SNP	Nonsense_Mutation	15	34654803	A	T	8	58
BRCA	TCGA-AQ-A1H2	CSPG4	SNP	Missense_Mutation	15	75982666	C	A	19	48
BRCA	TCGA-AQ-A1H2	MNT	SNP	Missense_Mutation	17	2291304	C	G	30	93
BRCA	TCGA-AQ-A1H2	POLR2A	SNP	Missense_Mutation	17	7400102	G	A	39	94
BRCA	TCGA-AQ-A1H2	TRAPPC1	SNP	Missense_Mutation	17	7833976	C	T	31	68
BRCA	TCGA-AQ-A1H2	MC2R	SNP	Missense_Mutation	18	13884764	C	T	27	65
BRCA	TCGA-AQ-A1H2	MGAT5	SNP	Splice_Site	2	135028123	T	G	57	90
BRCA	TCGA-AQ-A1H2	GPR113	SNP	Silent	2	26533779	C	T	29	52
BRCA	TCGA-AQ-A1H2	PRPF6	SNP	Missense_Mutation	20	62657296	A	G	2	93
BRCA	TCGA-AQ-A1H2	GRIK1	SNP	Missense_Mutation	21	30909667	A	G	11	66
BRCA	TCGA-AQ-A1H2	KLHL22	SNP	Missense_Mutation	22	20796481	C	A	27	64
BRCA	TCGA-AQ-A1H2	SLITRK2	SNP	Silent	23	144904015	T	A	55	81
BRCA	TCGA-AQ-A1H2	SPRY3	SNP	Missense_Mutation	23	155004063	C	T	32	81
BRCA	TCGA-AQ-A1H2	YY2	SNP	Silent	23	21874875	C	T	27	50
BRCA	TCGA-AQ-A1H2	MYH15	SNP	Nonsense_Mutation	3	108129757	G	A	46	99
BRCA	TCGA-AQ-A1H2	DIRC2	DEL	In_Frame_Del	3	122578962	CTC	-	32	79
BRCA	TCGA-AQ-A1H2	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AQ-A1H2	KIF9	SNP	Missense_Mutation	3	47308543	A	C	3	65
BRCA	TCGA-AQ-A1H2	ROBO1	SNP	Missense_Mutation	3	78987810	C	T	17	100
BRCA	TCGA-AQ-A1H2	FAT1	SNP	Missense_Mutation	4	187542456	C	T	27	41
BRCA	TCGA-AQ-A1H2	PHOX2B	SNP	Missense_Mutation	4	41749389	C	T	31	87
BRCA	TCGA-AQ-A1H2	PCDHGA2	SNP	Missense_Mutation	5	140718824	T	A	55	91
BRCA	TCGA-AQ-A1H2	CPLX2	SNP	Silent	5	175307021	G	A	42	52
BRCA	TCGA-AQ-A1H2	LPA	SNP	Missense_Mutation	6	160962167	C	G	18	84
BRCA	TCGA-AQ-A1H2	MDGA1	SNP	Missense_Mutation	6	37619916	C	G	27	84
BRCA	TCGA-AQ-A1H2	ENPP2	SNP	Missense_Mutation	8	120598499	G	A	40	75
BRCA	TCGA-AQ-A1H3	KIAA2013	SNP	Missense_Mutation	1	11982841	T	C	50	89
BRCA	TCGA-AQ-A1H3	INSRR	SNP	Missense_Mutation	1	156823744	T	A	54	87
BRCA	TCGA-AQ-A1H3	NFIA	SNP	Silent	1	61848997	G	A	40	40
BRCA	TCGA-AQ-A1H3	TCTN1	SNP	Missense_Mutation	12	111085646	A	C	6	52
BRCA	TCGA-AQ-A1H3	TBX3	INS	Frame_Shift_Ins	12	115115438	-	T	48	69
BRCA	TCGA-AQ-A1H3	CDKN1B	INS	Frame_Shift_Ins	12	12871006	-	GG	11	63
BRCA	TCGA-AQ-A1H3	CHD4	SNP	Missense_Mutation	12	6702279	C	T	23	100
BRCA	TCGA-AQ-A1H3	SIX6	SNP	Missense_Mutation	14	60976319	G	A	38	99
BRCA	TCGA-AQ-A1H3	HEATR4	SNP	Missense_Mutation	14	73976100	G	A	38	56
BRCA	TCGA-AQ-A1H3	RYR3	SNP	Silent	15	34015010	C	T	19	35
BRCA	TCGA-AQ-A1H3	DUOX2	SNP	Silent	15	45388167	G	A	39	40
BRCA	TCGA-AQ-A1H3	CCDC135	SNP	Missense_Mutation	16	57762336	T	G	59	55
BRCA	TCGA-AQ-A1H3	CBFB	DEL	Frame_Shift_Del	16	67070640	AGAA	-	15	58
BRCA	TCGA-AQ-A1H3	CD33	SNP	Silent	19	51729330	C	T	19	33
BRCA	TCGA-AQ-A1H3	LRP1B	SNP	Missense_Mutation	2	141081609	T	C	49	57
BRCA	TCGA-AQ-A1H3	SNX17	SNP	Missense_Mutation	2	27598768	G	A	38	67
BRCA	TCGA-AQ-A1H3	ARHGEF6	SNP	Missense_Mutation	23	135827435	G	C	48	56
BRCA	TCGA-AQ-A1H3	STARD8	SNP	Missense_Mutation	23	67938428	C	T	19	62
BRCA	TCGA-AQ-A1H3	GATA2	SNP	Missense_Mutation	3	128200691	C	T	27	98
BRCA	TCGA-AQ-A1H3	MECOM	SNP	Silent	3	168802736	C	T	23	25
BRCA	TCGA-AQ-A1H3	COL7A1	SNP	Silent	3	48630811	C	T	24	51
BRCA	TCGA-AQ-A1H3	PCDHA3	SNP	Missense_Mutation	5	140180885	G	A	40	53
BRCA	TCGA-AQ-A1H3	PCDHGA3	SNP	Silent	5	140725928	G	A	39	33
BRCA	TCGA-AQ-A1H3	PAPOLB	SNP	Silent	7	4900824	C	T	22	61
BRCA	TCGA-AQ-A1H3	NCF1	SNP	Missense_Mutation	7	74193672	C	T	19	66
BRCA	TCGA-AQ-A1H3	EXTL3	SNP	Nonsense_Mutation	8	28595120	C	G	17	65
BRCA	TCGA-AQ-A1H3	FGFR1	SNP	Silent	8	38314914	T	C	59	45
BRCA	TCGA-AQ-A1H3	RB1CC1	SNP	Splice_Site	8	53596281	T	G	53	89
BRCA	TCGA-AR-A0TP	HIST2H2AC	SNP	Silent	1	149858815	G	A	46	51
BRCA	TCGA-AR-A0TP	S100A10	SNP	Missense_Mutation	1	151958603	A	C	8	83
BRCA	TCGA-AR-A0TP	HRNR	SNP	Silent	1	152186053	A	G	8	49
BRCA	TCGA-AR-A0TP	ARHGEF10L	SNP	Silent	1	17982535	G	A	37	53
BRCA	TCGA-AR-A0TP	LCK	SNP	Silent	1	32742302	G	A	34	69
BRCA	TCGA-AR-A0TP	RIMS3	SNP	Missense_Mutation	1	41098846	A	T	3	87
BRCA	TCGA-AR-A0TP	IL23R	SNP	Missense_Mutation	1	67635217	G	T	47	51
BRCA	TCGA-AR-A0TP	HMX3	SNP	Nonsense_Mutation	10	124896894	C	T	21	77
BRCA	TCGA-AR-A0TP	KRTAP5-4	SNP	Silent	11	1642982	A	G	6	54
BRCA	TCGA-AR-A0TP	DCDC5	SNP	Missense_Mutation	11	30953328	G	A	40	47
BRCA	TCGA-AR-A0TP	MS4A14	SNP	Missense_Mutation	11	60165424	A	T	6	27
BRCA	TCGA-AR-A0TP	MYO1H	SNP	Splice_Site	12	109841786	G	A	35	91
BRCA	TCGA-AR-A0TP	PDE3A	SNP	Missense_Mutation	12	20766614	G	C	33	98
BRCA	TCGA-AR-A0TP	ABCC9	INS	Frame_Shift_Ins	12	22035726	-	G	27	23
BRCA	TCGA-AR-A0TP	KCNA6	SNP	Missense_Mutation	12	4919815	G	T	44	60
BRCA	TCGA-AR-A0TP	RDH5	SNP	Missense_Mutation	12	56115089	G	T	47	95
BRCA	TCGA-AR-A0TP	APOF	SNP	Missense_Mutation	12	56755521	G	T	46	47
BRCA	TCGA-AR-A0TP	CCNA1	SNP	Missense_Mutation	13	37016315	C	A	18	70
BRCA	TCGA-AR-A0TP	CCNB1IP1	SNP	Missense_Mutation	14	20781865	G	C	46	56
BRCA	TCGA-AR-A0TP	HECTD1	SNP	Missense_Mutation	14	31637616	C	T	29	100
BRCA	TCGA-AR-A0TP	GPHN	SNP	Silent	14	67390979	C	T	29	81
BRCA	TCGA-AR-A0TP	E4F1	SNP	Silent	16	2273638	G	A	43	63
BRCA	TCGA-AR-A0TP	ABCA3	SNP	Silent	16	2334368	C	A	30	51
BRCA	TCGA-AR-A0TP	SALL1	SNP	Missense_Mutation	16	51173646	C	T	21	67
BRCA	TCGA-AR-A0TP	SOLH	SNP	Missense_Mutation	16	603031	C	T	18	83
BRCA	TCGA-AR-A0TP	PIEZO1	SNP	Silent	16	88782406	C	T	25	53
BRCA	TCGA-AR-A0TP	RARA	DEL	In_Frame_Del	17	38508182	AAG	-	5	87
BRCA	TCGA-AR-A0TP	CSH2	SNP	Missense_Mutation	17	61949915	C	A	27	47
BRCA	TCGA-AR-A0TP	TP53	SNP	Missense_Mutation	17	7577120	C	G	19	94
BRCA	TCGA-AR-A0TP	LAMA1	SNP	Silent	18	6978265	A	G	7	2
BRCA	TCGA-AR-A0TP	ZNF506	SNP	Silent	19	19905658	A	G	6	63
BRCA	TCGA-AR-A0TP	LMTK3	DEL	Frame_Shift_Del	19	49004803	TGCGCAGGGCCAGGTCGC	-	63	82
BRCA	TCGA-AR-A0TP	SCAF1	SNP	Silent	19	50157992	C	G	24	53
BRCA	TCGA-AR-A0TP	ZNF577	SNP	Missense_Mutation	19	52381666	T	C	62	66
BRCA	TCGA-AR-A0TP	MUC16	SNP	Missense_Mutation	19	9090622	C	G	26	50
BRCA	TCGA-AR-A0TP	SCN2A	SNP	Missense_Mutation	2	166152454	C	T	19	68
BRCA	TCGA-AR-A0TP	COL6A2	SNP	Missense_Mutation	21	47545207	G	A	41	82
BRCA	TCGA-AR-A0TP	PCNT	SNP	Missense_Mutation	21	47783642	A	G	10	62
BRCA	TCGA-AR-A0TP	LIF	SNP	Missense_Mutation	22	30640840	A	C	6	37
BRCA	TCGA-AR-A0TP	PLA2G6	DEL	Frame_Shift_Del	22	38512192	TCAGACAGTGTCCCTGTCA	-	58	86
BRCA	TCGA-AR-A0TP	IRS4	SNP	Missense_Mutation	23	107976825	C	A	28	71
BRCA	TCGA-AR-A0TP	WDR44	SNP	Missense_Mutation	23	117576637	G	A	36	96
BRCA	TCGA-AR-A0TP	TBC1D25	SNP	Splice_site	23	48398185	G	A	41	60
BRCA	TCGA-AR-A0TP	KIAA2022	SNP	Missense_Mutation	23	73963226	C	A	30	43
BRCA	TCGA-AR-A0TP	HMGN5	SNP	Missense_Mutation	23	80370453	C	T	23	53
BRCA	TCGA-AR-A0TP	ATP2C1	DEL	Frame_Shift_Del	3	130694222	T	-	52	88
BRCA	TCGA-AR-A0TP	NEK11	DEL	In_Frame_Del	3	130947412	TGATGCATT	-	55	41
BRCA	TCGA-AR-A0TP	NME9	SNP	Missense_Mutation	3	138023764	C	T	19	48
BRCA	TCGA-AR-A0TP	IQCF6	DEL	Frame_Shift_Del	3	51812782	GCCTGCGG	-	38	54
BRCA	TCGA-AR-A0TP	SEC24D	SNP	Missense_Mutation	4	119689345	C	G	25	100
BRCA	TCGA-AR-A0TP	MSMO1	SNP	Missense_Mutation	4	166254530	C	G	17	54
BRCA	TCGA-AR-A0TP	TBC1D19	SNP	Missense_Mutation	4	26685350	G	T	47	56
BRCA	TCGA-AR-A0TP	PDS5A	SNP	Missense_Mutation	4	39864689	T	G	54	92
BRCA	TCGA-AR-A0TP	BEND4	SNP	Silent	4	42119673	G	A	40	40
BRCA	TCGA-AR-A0TP	LPHN3	DEL	Frame_Shift_Del	4	62812716	A	-	9	92
BRCA	TCGA-AR-A0TP	MAN2A1	SNP	Missense_Mutation	5	109202637	A	G	9	81
BRCA	TCGA-AR-A0TP	DTWD2	SNP	Missense_Mutation	5	118176639	T	A	52	50
BRCA	TCGA-AR-A0TP	KLHL3	SNP	Silent	5	136974658	G	C	34	54
BRCA	TCGA-AR-A0TP	ROS1	SNP	Missense_Mutation	6	117609902	G	C	40	59
BRCA	TCGA-AR-A0TP	SMPDL3A	SNP	Missense_Mutation	6	123126231	A	G	1	52
BRCA	TCGA-AR-A0TP	C6orf15	SNP	Missense_Mutation	6	31079720	G	C	41	74
BRCA	TCGA-AR-A0TP	TFAP2B	SNP	Missense_Mutation	6	50796376	G	C	36	68
BRCA	TCGA-AR-A0TP	PKHD1	SNP	Silent	6	51609274	C	T	24	47
BRCA	TCGA-AR-A0TP	PRKAR2B	SNP	Missense_Mutation	7	106786812	A	G	12	91
BRCA	TCGA-AR-A0TP	TNS3	SNP	Missense_Mutation	7	47440029	C	A	18	56
BRCA	TCGA-AR-A0TP	ELN	SNP	Missense_Mutation	7	73474233	G	C	39	71
BRCA	TCGA-AR-A0TP	RFC2	SNP	Missense_Mutation	7	73668685	G	A	38	59
BRCA	TCGA-AR-A0TP	SEMA3D	DEL	Frame_Shift_Del	7	84671502	A	-	13	67
BRCA	TCGA-AR-A0TP	PKHD1L1	SNP	Silent	8	110467029	T	C	55	44
BRCA	TCGA-AR-A0TP	LRRC24	SNP	Missense_Mutation	8	145748740	C	T	30	61
BRCA	TCGA-AR-A0TP	ZFHX4	SNP	Missense_Mutation	8	77767858	A	G	2	63
BRCA	TCGA-AR-A0TP	C9orf43	SNP	Missense_Mutation	9	116175849	G	T	42	70
BRCA	TCGA-AR-A0TP	FBXO10	SNP	Missense_Mutation	9	37512576	T	G	55	71
BRCA	TCGA-AR-A0TQ	FCRL5	SNP	Missense_Mutation	1	157512693	C	T	26	50
BRCA	TCGA-AR-A0TQ	DDR2	SNP	Missense_Mutation	1	162737075	G	C	42	96
BRCA	TCGA-AR-A0TQ	NRAP	DNP	Missense_Mutation	10	115351970	TA	AG	53	64
BRCA	TCGA-AR-A0TQ	DUSP13	SNP	Missense_Mutation	10	76854523	C	T	26	52
BRCA	TCGA-AR-A0TQ	DLG5	SNP	Silent	10	79590037	C	T	23	27
BRCA	TCGA-AR-A0TQ	GATA3	INS	Frame_Shift_Ins	10	8111503	-	C	35	100
BRCA	TCGA-AR-A0TQ	PLCE1	SNP	Missense_Mutation	10	96025410	G	A	37	100
BRCA	TCGA-AR-A0TQ	MS4A6E	SNP	Silent	11	60102443	G	A	33	48
BRCA	TCGA-AR-A0TQ	SLC25A45	SNP	Missense_Mutation	11	65146870	C	A	22	66
BRCA	TCGA-AR-A0TQ	CDADC1	SNP	Missense_Mutation	13	49852559	A	C	16	88
BRCA	TCGA-AR-A0TQ	TJP1	SNP	Missense_Mutation	15	30011144	C	T	30	99
BRCA	TCGA-AR-A0TQ	ARIH1	SNP	Silent	15	72767316	C	T	17	71
BRCA	TCGA-AR-A0TQ	UNC45A	SNP	Silent	15	91479663	G	T	41	50
BRCA	TCGA-AR-A0TQ	TXNDC11	SNP	Missense_Mutation	16	11773412	C	T	23	48
BRCA	TCGA-AR-A0TQ	ZKSCAN2	SNP	Missense_Mutation	16	25264349	G	A	33	67
BRCA	TCGA-AR-A0TQ	TOX3	SNP	Nonsense_Mutation	16	52484429	G	T	44	52
BRCA	TCGA-AR-A0TQ	BRIP1	SNP	Missense_Mutation	17	59876540	C	T	29	96
BRCA	TCGA-AR-A0TQ	POLG2	SNP	Missense_Mutation	17	62479061	C	T	32	59
BRCA	TCGA-AR-A0TQ	POLG2	SNP	Missense_Mutation	17	62479064	C	T	30	78
BRCA	TCGA-AR-A0TQ	EPS15L1	SNP	Silent	19	16528407	C	T	29	54
BRCA	TCGA-AR-A0TQ	EMR4P	SNP	Missense_Mutation	19	6971253	T	A	51	59
BRCA	TCGA-AR-A0TQ	AGAP1	SNP	Silent	2	237032619	C	A	22	57
BRCA	TCGA-AR-A0TQ	NCOA3	SNP	Missense_Mutation	20	46264755	C	T	29	83
BRCA	TCGA-AR-A0TQ	PTPN1	SNP	Missense_Mutation	20	49197812	G	C	33	92
BRCA	TCGA-AR-A0TQ	ATP9A	SNP	Missense_Mutation	20	50286635	C	A	32	75
BRCA	TCGA-AR-A0TQ	TNFRSF6B	SNP	Silent	20	62328432	T	C	56	22
BRCA	TCGA-AR-A0TQ	SBF1	SNP	Missense_Mutation	22	50898033	C	T	27	97
BRCA	TCGA-AR-A0TQ	CXorf58	SNP	Silent	23	23957372	G	A	39	44
BRCA	TCGA-AR-A0TQ	SCN10A	SNP	Silent	3	38751020	C	A	29	57
BRCA	TCGA-AR-A0TQ	ADD1	SNP	Missense_Mutation	4	2877718	G	A	37	85
BRCA	TCGA-AR-A0TQ	ACSL6	SNP	Missense_Mutation	5	131308520	C	T	27	89
BRCA	TCGA-AR-A0TQ	TIMD4	SNP	Missense_Mutation	5	156381720	C	T	18	70
BRCA	TCGA-AR-A0TQ	ITGA2	SNP	Splice_Site	5	52369090	G	T	44	79
BRCA	TCGA-AR-A0TQ	PIK3R1	SNP	Missense_Mutation	5	67589627	G	A	45	97
BRCA	TCGA-AR-A0TQ	BAK1	SNP	Silent	6	33545325	C	T	25	45
BRCA	TCGA-AR-A0TQ	TBC1D22B	SNP	Missense_Mutation	6	37247157	G	A	39	67
BRCA	TCGA-AR-A0TQ	DNAH8	SNP	Missense_Mutation	6	38750824	C	G	30	49
BRCA	TCGA-AR-A0TQ	TRERF1	DEL	In_Frame_Del	6	42231239	GGCGGA	-	39	61
BRCA	TCGA-AR-A0TQ	RIMS1	SNP	Missense_Mutation	6	72678714	G	T	46	76
BRCA	TCGA-AR-A0TQ	SERPINE1	SNP	Silent	7	100780349	C	T	30	33
BRCA	TCGA-AR-A0TQ	CAV1	SNP	Splice_site	7	116165115	G	T	34	81
BRCA	TCGA-AR-A0TQ	CHRM2	SNP	Silent	7	136700644	G	T	47	61
BRCA	TCGA-AR-A0TQ	GIMAP5	SNP	Missense_Mutation	7	150439553	C	T	23	83
BRCA	TCGA-AR-A0TQ	LOC643955	SNP	Missense_Mutation	7	62753195	T	C	51	61
BRCA	TCGA-AR-A0TR	FCRL5	SNP	Missense_Mutation	1	157516743	A	T	4	35
BRCA	TCGA-AR-A0TR	LIN9	DEL	In_Frame_Del	1	226421155	CTT	-	28	82
BRCA	TCGA-AR-A0TR	MORN1	SNP	Missense_Mutation	1	2267971	G	A	41	55
BRCA	TCGA-AR-A0TR	CHML	SNP	Missense_Mutation	1	241797975	T	C	55	51
BRCA	TCGA-AR-A0TR	ABLIM1	SNP	Missense_Mutation	10	116335275	C	T	23	100
BRCA	TCGA-AR-A0TR	ACADSB	SNP	Missense_Mutation	10	124768562	T	C	59	49
BRCA	TCGA-AR-A0TR	KIAA1279	SNP	Splice_site	10	70764802	G	T	44	56
BRCA	TCGA-AR-A0TR	APLP2	DEL	Frame_Shift_Del	11	130003552	A	-	9	87
BRCA	TCGA-AR-A0TR	MADD	SNP	Missense_Mutation	11	47350233	G	A	34	79
BRCA	TCGA-AR-A0TR	NELL2	DEL	Frame_Shift_Del	12	45097587	T	-	55	54
BRCA	TCGA-AR-A0TR	ADCY6	SNP	Silent	12	49164616	G	C	47	62
BRCA	TCGA-AR-A0TR	ATN1	SNP	Missense_Mutation	12	7045035	C	T	17	62
BRCA	TCGA-AR-A0TR	PAPOLA	SNP	Silent	14	97022708	A	G	6	50
BRCA	TCGA-AR-A0TR	PPIP5K1	SNP	Missense_Mutation	15	43873257	C	T	26	100
BRCA	TCGA-AR-A0TR	ADAMTSL3	SNP	Missense_Mutation	15	84539708	C	G	29	53
BRCA	TCGA-AR-A0TR	C16orf54	SNP	Missense_Mutation	16	29756269	G	T	42	63
BRCA	TCGA-AR-A0TR	FANCA	SNP	Missense_Mutation	16	89815165	G	A	39	36
BRCA	TCGA-AR-A0TR	C17orf67	SNP	Missense_Mutation	17	54872495	T	C	55	67
BRCA	TCGA-AR-A0TR	METTL2A	INS	Frame_Shift_Ins	17	60512605	-	T	32	62
BRCA	TCGA-AR-A0TR	DNAH17	SNP	Splice_Site	17	76455082	C	T	19	99
BRCA	TCGA-AR-A0TR	KIAA1683	SNP	Missense_Mutation	19	18368606	G	A	44	61
BRCA	TCGA-AR-A0TR	ZFP82	SNP	Missense_Mutation	19	36883819	C	T	31	78
BRCA	TCGA-AR-A0TR	SLC17A7	SNP	Missense_Mutation	19	49934639	G	A	41	91
BRCA	TCGA-AR-A0TR	FPR3	SNP	Missense_Mutation	19	52327735	C	T	28	84
BRCA	TCGA-AR-A0TR	MYO1F	SNP	Missense_Mutation	19	8587693	G	T	42	59
BRCA	TCGA-AR-A0TR	ARL6IP6	SNP	Silent	2	153577066	G	A	45	58
BRCA	TCGA-AR-A0TR	ITGA6	SNP	Splice_site	2	173332209	C	T	28	67
BRCA	TCGA-AR-A0TR	PMS1	SNP	Missense_Mutation	2	190719470	C	T	31	50
BRCA	TCGA-AR-A0TR	DYTN	SNP	Silent	2	207572064	C	T	23	7
BRCA	TCGA-AR-A0TR	SMYD1	SNP	Silent	2	88387504	C	T	18	38
BRCA	TCGA-AR-A0TR	FAM110A	SNP	Missense_Mutation	20	825502	C	T	23	66
BRCA	TCGA-AR-A0TR	ITSN1	SNP	Missense_Mutation	21	35247757	C	T	27	74
BRCA	TCGA-AR-A0TR	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-AR-A0TR	MAP4	SNP	Silent	3	47956413	C	T	23	54
BRCA	TCGA-AR-A0TR	STAB1	SNP	Silent	3	52556668	C	T	30	44
BRCA	TCGA-AR-A0TR	USP53	SNP	Missense_Mutation	4	120182931	T	A	50	90
BRCA	TCGA-AR-A0TR	RNF175	SNP	Silent	4	154669848	A	G	5	50
BRCA	TCGA-AR-A0TR	ZFP42	SNP	Missense_Mutation	4	188924860	C	T	25	54
BRCA	TCGA-AR-A0TR	TUBB4Q	SNP	Missense_Mutation	4	190905620	C	T	19	77
BRCA	TCGA-AR-A0TR	SERPINB6	SNP	Silent	6	2949205	A	T	5	11
BRCA	TCGA-AR-A0TR	RPL7L1	SNP	Silent	6	42851236	A	T	14	20
BRCA	TCGA-AR-A0TR	NACAD	SNP	Silent	7	45123805	C	T	28	46
BRCA	TCGA-AR-A0TR	XPO7	SNP	Missense_Mutation	8	21862543	A	G	5	85
BRCA	TCGA-AR-A0TR	FAM129B	SNP	Missense_Mutation	9	130270454	A	T	6	86
BRCA	TCGA-AR-A0TS	AMPD1	SNP	Splice_Site	1	115236070	T	A	55	78
BRCA	TCGA-AR-A0TS	ASH1L	SNP	Silent	1	155313175	G	A	33	44
BRCA	TCGA-AR-A0TS	USP21	DEL	Frame_Shift_Del	1	161134356	T	-	57	63
BRCA	TCGA-AR-A0TS	SELL	SNP	Missense_Mutation	1	169673765	T	C	62	54
BRCA	TCGA-AR-A0TS	TPR	SNP	Missense_Mutation	1	186325525	C	T	27	79
BRCA	TCGA-AR-A0TS	PIK3C2B	SNP	Missense_Mutation	1	204408104	A	G	7	91
BRCA	TCGA-AR-A0TS	RCAN3	SNP	Silent	1	24859683	C	T	27	41
BRCA	TCGA-AR-A0TS	ARHGAP29	SNP	Missense_Mutation	1	94639535	C	A	32	53
BRCA	TCGA-AR-A0TS	AKR1C3	SNP	Missense_Mutation	10	5141532	G	T	48	60
BRCA	TCGA-AR-A0TS	SYT9	SNP	Silent	11	7335088	C	A	26	70
BRCA	TCGA-AR-A0TS	PRSS23	INS	In_Frame_Ins	11	86519666	-	CAGCAG	10	49
BRCA	TCGA-AR-A0TS	SELPLG	SNP	Silent	12	109017607	C	T	23	19
BRCA	TCGA-AR-A0TS	SLITRK1	SNP	Missense_Mutation	13	84454496	G	C	40	51
BRCA	TCGA-AR-A0TS	HSPA2	SNP	Missense_Mutation	14	65007625	G	T	39	100
BRCA	TCGA-AR-A0TS	ERI2	SNP	Missense_Mutation	16	20812611	T	A	55	72
BRCA	TCGA-AR-A0TS	TSC2	SNP	Silent	16	2136343	C	A	26	50
BRCA	TCGA-AR-A0TS	ERN2	SNP	Missense_Mutation	16	23711935	A	T	11	58
BRCA	TCGA-AR-A0TS	CHD9	SNP	Missense_Mutation	16	53338403	G	C	42	86
BRCA	TCGA-AR-A0TS	PIGQ	SNP	Missense_Mutation	16	625917	C	A	18	52
BRCA	TCGA-AR-A0TS	WWP2	SNP	Silent	16	69922069	A	C	6	44
BRCA	TCGA-AR-A0TS	AARS	SNP	Missense_Mutation	16	70296374	C	A	19	68
BRCA	TCGA-AR-A0TS	TP53	SNP	Nonsense_Mutation	17	7578257	C	A	30	96
BRCA	TCGA-AR-A0TS	LIPG	SNP	Missense_Mutation	18	47093896	G	C	45	77
BRCA	TCGA-AR-A0TS	ZNF473	SNP	Missense_Mutation	19	50548416	A	T	8	47
BRCA	TCGA-AR-A0TS	NCR1	SNP	Silent	19	55417945	G	A	45	52
BRCA	TCGA-AR-A0TS	SMC6	SNP	Missense_Mutation	2	17902510	G	A	38	90
BRCA	TCGA-AR-A0TS	CENPO	SNP	Silent	2	25040582	T	A	54	50
BRCA	TCGA-AR-A0TS	RAB1A	SNP	Missense_Mutation	2	65315732	C	G	32	78
BRCA	TCGA-AR-A0TS	ADAM33	SNP	Silent	20	3649962	G	C	33	57
BRCA	TCGA-AR-A0TS	CDKL5	SNP	Missense_Mutation	23	18631363	C	A	18	58
BRCA	TCGA-AR-A0TS	COL6A5	SNP	Silent	3	130098667	G	A	38	24
BRCA	TCGA-AR-A0TS	HPS3	SNP	Missense_Mutation	3	148875176	A	C	11	68
BRCA	TCGA-AR-A0TS	CENPE	SNP	Missense_Mutation	4	104098112	T	G	52	43
BRCA	TCGA-AR-A0TS	DCHS2	DEL	Frame_Shift_Del	4	155287566	G	-	37	95
BRCA	TCGA-AR-A0TS	ASIC5	SNP	Missense_Mutation	4	156764876	G	A	45	69
BRCA	TCGA-AR-A0TS	PCDHB13	SNP	Silent	5	140595375	C	T	31	51
BRCA	TCGA-AR-A0TS	SUB1	SNP	Silent	5	32601185	C	T	20	81
BRCA	TCGA-AR-A0TS	SERINC1	SNP	Missense_Mutation	6	122775305	A	G	1	92
BRCA	TCGA-AR-A0TS	UBR2	SNP	Missense_Mutation	6	42629951	G	A	45	71
BRCA	TCGA-AR-A0TS	LOC100289653	SNP	Missense_Mutation	6	87607052	G	A	37	52
BRCA	TCGA-AR-A0TS	C8orf31	SNP	Missense_Mutation	8	144126108	G	C	33	46
BRCA	TCGA-AR-A0TS	CDCA2	SNP	Missense_Mutation	8	25365051	C	G	30	49
BRCA	TCGA-AR-A0TS	RGS20	SNP	Missense_Mutation	8	54791869	G	A	39	45
BRCA	TCGA-AR-A0TS	RBM12B	SNP	Nonsense_Mutation	8	94748065	G	A	39	55
BRCA	TCGA-AR-A0TS	CACNA1B	SNP	Missense_Mutation	9	140970313	C	T	23	70
BRCA	TCGA-AR-A0TT	AMIGO1	SNP	Missense_Mutation	1	110050505	T	C	51	51
BRCA	TCGA-AR-A0TT	RORC	SNP	Splice_site	1	151804201	C	T	22	72
BRCA	TCGA-AR-A0TT	DARC	SNP	Missense_Mutation	1	159176056	G	T	48	74
BRCA	TCGA-AR-A0TT	RYR2	SNP	Missense_Mutation	1	237947265	A	C	5	72
BRCA	TCGA-AR-A0TT	OR2G3	SNP	Silent	1	247769184	G	A	38	22
BRCA	TCGA-AR-A0TT	TRIM63	SNP	Missense_Mutation	1	26393958	C	T	30	72
BRCA	TCGA-AR-A0TT	SRSF4	SNP	Missense_Mutation	1	29481326	T	C	62	88
BRCA	TCGA-AR-A0TT	ARHGAP21	SNP	Missense_Mutation	10	24908483	C	A	18	73
BRCA	TCGA-AR-A0TT	MYST4	SNP	Missense_Mutation	10	76735170	G	A	45	96
BRCA	TCGA-AR-A0TT	SLC35F2	DEL	Frame_Shift_Del	11	107663404	C	-	30	25
BRCA	TCGA-AR-A0TT	WNT11	SNP	Missense_Mutation	11	75902837	G	A	39	72
BRCA	TCGA-AR-A0TT	GPR19	SNP	Silent	12	12815194	C	T	22	50
BRCA	TCGA-AR-A0TT	NBEA	DEL	Frame_Shift_Del	13	35733981	TT	-	56	52
BRCA	TCGA-AR-A0TT	NPAS3	SNP	Splice_Site	14	34243738	T	C	57	93
BRCA	TCGA-AR-A0TT	ZC3H7A	SNP	Missense_Mutation	16	11856531	G	A	38	72
BRCA	TCGA-AR-A0TT		SNP	Missense_Mutation	16	28354457	G	A	43	52
BRCA	TCGA-AR-A0TT	N4BP1	SNP	Missense_Mutation	16	48595370	C	G	32	54
BRCA	TCGA-AR-A0TT	N4BP1	SNP	Missense_Mutation	16	48595699	C	G	30	59
BRCA	TCGA-AR-A0TT	MSLN	SNP	Missense_Mutation	16	813660	G	A	39	55
BRCA	TCGA-AR-A0TT	GALNS	SNP	Missense_Mutation	16	88880888	G	T	44	64
BRCA	TCGA-AR-A0TT	MEIS3P1	SNP	Missense_Mutation	17	15690462	C	T	22	64
BRCA	TCGA-AR-A0TT	NCOR1	SNP	Splice_Site	17	16075115	A	G	14	83
BRCA	TCGA-AR-A0TT	HOXB6	SNP	Silent	17	46675234	G	A	39	49
BRCA	TCGA-AR-A0TT	CACNA1G	SNP	Missense_Mutation	17	48701886	G	T	38	96
BRCA	TCGA-AR-A0TT	SMG8	SNP	Missense_Mutation	17	57289786	G	A	35	69
BRCA	TCGA-AR-A0TT	TIMP2	SNP	Silent	17	76851797	G	A	38	49
BRCA	TCGA-AR-A0TT	PER1	SNP	Missense_Mutation	17	8050807	A	G	12	82
BRCA	TCGA-AR-A0TT	ME2	SNP	Missense_Mutation	18	48447486	G	C	33	100
BRCA	TCGA-AR-A0TT	MRPL54	SNP	Silent	19	3765204	C	T	27	30
BRCA	TCGA-AR-A0TT	EMC10	SNP	Missense_Mutation	19	50983986	C	T	31	95
BRCA	TCGA-AR-A0TT	NLRP13	SNP	Silent	19	56423854	G	A	40	38
BRCA	TCGA-AR-A0TT	PKP4	SNP	Missense_Mutation	2	159514765	G	A	45	83
BRCA	TCGA-AR-A0TT	ALMS1P	SNP	Missense_Mutation	2	73901054	G	A	41	54
BRCA	TCGA-AR-A0TT	TBC1D8B	SNP	Missense_Mutation	23	106069286	A	T	11	86
BRCA	TCGA-AR-A0TT	GPR112	SNP	Missense_Mutation	23	135445680	A	T	3	48
BRCA	TCGA-AR-A0TT	PLXNA3	SNP	Missense_Mutation	23	153696287	C	A	27	59
BRCA	TCGA-AR-A0TT	KPNA1	SNP	Silent	3	122146488	A	T	5	71
BRCA	TCGA-AR-A0TT	NT5DC2	SNP	Splice_site	3	52558835	C	T	29	50
BRCA	TCGA-AR-A0TT	LRTM1	SNP	Missense_Mutation	3	54959105	G	A	44	99
BRCA	TCGA-AR-A0TT	DDX60L	SNP	Missense_Mutation	4	169379152	G	C	48	23
BRCA	TCGA-AR-A0TT	EXOC1	SNP	Missense_Mutation	4	56765860	T	G	57	89
BRCA	TCGA-AR-A0TT	FAM173B	SNP	Missense_Mutation	5	10227578	T	C	51	35
BRCA	TCGA-AR-A0TT	PCDHA10	SNP	Silent	5	140237004	C	T	23	49
BRCA	TCGA-AR-A0TT	PCDHGA2	SNP	Missense_Mutation	5	140720475	T	A	50	88
BRCA	TCGA-AR-A0TT	PDE6A	SNP	Missense_Mutation	5	149265830	C	G	29	74
BRCA	TCGA-AR-A0TT	NIPAL4	SNP	Silent	5	156899386	C	T	29	55
BRCA	TCGA-AR-A0TT	ZSCAN12	SNP	Nonsense_Mutation	6	28358993	A	C	12	51
BRCA	TCGA-AR-A0TT	GUCA1A	SNP	Missense_Mutation	6	42147050	G	A	37	66
BRCA	TCGA-AR-A0TT	OR2A42	SNP	Missense_Mutation	7	143929644	G	A	40	53
BRCA	TCGA-AR-A0TT	KIAA0196	SNP	Silent	8	126073396	T	G	49	49
BRCA	TCGA-AR-A0TT	SFRP1	SNP	Missense_Mutation	8	41166417	C	T	26	95
BRCA	TCGA-AR-A0TT	KCNB2	DEL	Frame_Shift_Del	8	73850130	AA	-	9	58
BRCA	TCGA-AR-A0TT	KCNB2	DEL	Frame_Shift_Del	8	73850133	AGGGC	-	11	66
BRCA	TCGA-AR-A0TT	BNC2	SNP	Missense_Mutation	9	16419369	C	T	20	100
BRCA	TCGA-AR-A0TU	TPR	SNP	Missense_Mutation	1	186321122	G	T	33	74
BRCA	TCGA-AR-A0TU	IKBKE	SNP	Missense_Mutation	1	206650162	C	T	19	61
BRCA	TCGA-AR-A0TU	USH2A	SNP	Missense_Mutation	1	215953193	G	A	40	69
BRCA	TCGA-AR-A0TU	CDC42BPA	DEL	In_Frame_Del	1	227333330	CTATTCCATTTTGAC	-	32	71
BRCA	TCGA-AR-A0TU	AKT3	SNP	Missense_Mutation	1	243727042	G	C	41	100
BRCA	TCGA-AR-A0TU	YTHDF2	SNP	Silent	1	29069325	C	T	25	57
BRCA	TCGA-AR-A0TU	EIF3I	SNP	Missense_Mutation	1	32691906	G	A	41	95
BRCA	TCGA-AR-A0TU	BSDC1	SNP	Missense_Mutation	1	32849538	C	T	18	99
BRCA	TCGA-AR-A0TU	EPHA10	SNP	Silent	1	38185168	T	G	55	76
BRCA	TCGA-AR-A0TU	CAP1	SNP	Missense_Mutation	1	40525103	C	G	23	48
BRCA	TCGA-AR-A0TU	SSBP3	SNP	Silent	1	54722839	G	A	40	49
BRCA	TCGA-AR-A0TU	IDI1	SNP	Missense_Mutation	10	1094816	C	T	23	43
BRCA	TCGA-AR-A0TU	BICC1	SNP	Missense_Mutation	10	60553276	G	A	45	76
BRCA	TCGA-AR-A0TU	IFIT5	SNP	Missense_Mutation	10	91177984	A	G	10	66
BRCA	TCGA-AR-A0TU	MMS19	SNP	Missense_Mutation	10	99220677	G	A	36	94
BRCA	TCGA-AR-A0TU	C11orf52	SNP	Missense_Mutation	11	111789707	G	C	39	44
BRCA	TCGA-AR-A0TU	DSCAML1	SNP	Missense_Mutation	11	117376295	C	T	31	99
BRCA	TCGA-AR-A0TU	CXCR5	SNP	Splice_site	11	118765373	G	T	44	53
BRCA	TCGA-AR-A0TU	KCNJ8	SNP	Missense_Mutation	12	21919255	C	T	27	86
BRCA	TCGA-AR-A0TU	VDR	SNP	Silent	12	48240182	C	T	29	54
BRCA	TCGA-AR-A0TU	SUOX	SNP	Silent	12	56398436	G	A	35	49
BRCA	TCGA-AR-A0TU	ANO2	SNP	Missense_Mutation	12	5674793	G	T	44	54
BRCA	TCGA-AR-A0TU	KCNC2	SNP	Missense_Mutation	12	75441951	C	T	29	82
BRCA	TCGA-AR-A0TU	CRIP2	SNP	Missense_Mutation	14	105945815	C	G	24	88
BRCA	TCGA-AR-A0TU	CNIH	SNP	Splice_Site	14	54896977	A	C	14	89
BRCA	TCGA-AR-A0TU	C14orf37	DEL	Frame_Shift_Del	14	58604819	CTCCCGTA	-	32	57
BRCA	TCGA-AR-A0TU	PROX2	SNP	Missense_Mutation	14	75329523	G	T	47	64
BRCA	TCGA-AR-A0TU	SERPINA4	SNP	Missense_Mutation	14	95029869	T	A	56	53
BRCA	TCGA-AR-A0TU	HERC2	SNP	Silent	15	28446656	T	A	54	53
BRCA	TCGA-AR-A0TU	VPS18	SNP	Missense_Mutation	15	41195138	C	T	27	73
BRCA	TCGA-AR-A0TU	MAPKBP1	SNP	Silent	15	42113197	G	C	38	29
BRCA	TCGA-AR-A0TU	VPS13C	SNP	Missense_Mutation	15	62172909	G	C	47	73
BRCA	TCGA-AR-A0TU	GRIN2A	SNP	Nonsense_Mutation	16	9857875	C	A	32	94
BRCA	TCGA-AR-A0TU	ACCN1	SNP	Missense_Mutation	17	31415915	C	T	22	96
BRCA	TCGA-AR-A0TU	KRT14	SNP	Missense_Mutation	17	39740663	T	C	49	50
BRCA	TCGA-AR-A0TU	CD300A	SNP	Missense_Mutation	17	72469868	G	C	43	50
BRCA	TCGA-AR-A0TU	RNF213	SNP	Silent	17	78326840	G	T	38	42
BRCA	TCGA-AR-A0TU	LAMA3	SNP	Splice_Site	18	21481288	G	T	44	86
BRCA	TCGA-AR-A0TU	KIAA1683	SNP	Missense_Mutation	19	18377840	C	A	24	67
BRCA	TCGA-AR-A0TU	ZNF614	SNP	Translation_Start_Site	19	52531614	G	A	40	42
BRCA	TCGA-AR-A0TU	ZIM3	SNP	Missense_Mutation	19	57649909	G	C	34	53
BRCA	TCGA-AR-A0TU	ACSBG2	SNP	Silent	19	6183236	C	T	28	68
BRCA	TCGA-AR-A0TU	SCN1A	DEL	Frame_Shift_Del	2	166848260	G	-	47	100
BRCA	TCGA-AR-A0TU	ALS2	SNP	Silent	2	202590162	T	C	62	61
BRCA	TCGA-AR-A0TU	ADD2	SNP	Nonsense_Mutation	2	70931513	G	A	38	58
BRCA	TCGA-AR-A0TU	DOK1	SNP	Missense_Mutation	2	74783820	A	T	11	52
BRCA	TCGA-AR-A0TU	KANSL3	SNP	Silent	2	97267392	G	A	35	46
BRCA	TCGA-AR-A0TU	FER1L5	SNP	Missense_Mutation	2	97327959	C	A	18	29
BRCA	TCGA-AR-A0TU	HNF4A	SNP	Missense_Mutation	20	43036067	C	G	23	58
BRCA	TCGA-AR-A0TU	NF2	SNP	Nonsense_Mutation	22	30057312	C	A	31	87
BRCA	TCGA-AR-A0TU	RASD2	SNP	Missense_Mutation	22	35948015	A	C	14	90
BRCA	TCGA-AR-A0TU	HDAC10	SNP	Missense_Mutation	22	50688545	C	T	28	67
BRCA	TCGA-AR-A0TU	IL1RAPL2	SNP	Missense_Mutation	23	104728375	G	T	34	83
BRCA	TCGA-AR-A0TU	MAGEC3	SNP	Silent	23	140969432	A	G	13	34
BRCA	TCGA-AR-A0TU	MAMLD1	SNP	Silent	23	149639246	C	A	28	49
BRCA	TCGA-AR-A0TU	PASD1	SNP	Missense_Mutation	23	150844587	A	G	11	60
BRCA	TCGA-AR-A0TU	F8	SNP	Silent	23	154159895	A	G	3	61
BRCA	TCGA-AR-A0TU	F8	SNP	Missense_Mutation	23	154194287	G	C	33	53
BRCA	TCGA-AR-A0TU	FAAH2	SNP	Silent	23	57358158	T	C	57	59
BRCA	TCGA-AR-A0TU	AWAT1	SNP	Silent	23	69459753	C	T	30	52
BRCA	TCGA-AR-A0TU	SLC7A3	SNP	Silent	23	70149842	C	T	19	52
BRCA	TCGA-AR-A0TU	ZNF711	SNP	Missense_Mutation	23	84526405	C	A	17	64
BRCA	TCGA-AR-A0TU	PVRL3	SNP	Missense_Mutation	3	110852796	G	A	45	90
BRCA	TCGA-AR-A0TU	PDIA5	SNP	Silent	3	122811242	G	A	47	63
BRCA	TCGA-AR-A0TU	PRKCI	SNP	Missense_Mutation	3	170015134	G	C	46	84
BRCA	TCGA-AR-A0TU	NKTR	SNP	Missense_Mutation	3	42678448	C	A	24	50
BRCA	TCGA-AR-A0TU	ROBO1	SNP	Missense_Mutation	3	78734951	C	A	32	78
BRCA	TCGA-AR-A0TU	CCKAR	SNP	Silent	4	26491054	G	A	38	55
BRCA	TCGA-AR-A0TU	SCFD2	SNP	Silent	4	54231620	A	T	5	49
BRCA	TCGA-AR-A0TU	KIAA0232	SNP	Missense_Mutation	4	6863899	G	C	34	86
BRCA	TCGA-AR-A0TU	MAN2A1	SNP	Missense_Mutation	5	109200756	A	G	4	62
BRCA	TCGA-AR-A0TU	ZNF300	INS	Frame_Shift_Ins	5	150275563	-	C	62	51
BRCA	TCGA-AR-A0TU	ADRA1B	DEL	In_Frame_Del	5	159344505	CCGAAGAACCCTTCTATGCCCTCTTCT	-	18	99
BRCA	TCGA-AR-A0TU	SPEF2	SNP	Missense_Mutation	5	35727923	G	C	45	59
BRCA	TCGA-AR-A0TU	HDAC2	DEL	Frame_Shift_Del	6	114277211	TAACG	-	61	92
BRCA	TCGA-AR-A0TU	VNN1	SNP	Missense_Mutation	6	133032939	C	A	21	65
BRCA	TCGA-AR-A0TU	CNKSR3	SNP	Missense_Mutation	6	154763259	T	A	51	90
BRCA	TCGA-AR-A0TU	NOX3	SNP	Silent	6	155750119	C	T	27	41
BRCA	TCGA-AR-A0TU	DEFB113	SNP	Missense_Mutation	6	49937333	C	G	32	71
BRCA	TCGA-AR-A0TU	MET	DEL	In_Frame_Del	7	116340214	GAT	-	37	75
BRCA	TCGA-AR-A0TU	MET	DEL	In_Frame_Del	7	116340219	GCC	-	46	99
BRCA	TCGA-AR-A0TU	MET	INS	Frame_Shift_Ins	7	116340222	-	T	8	57
BRCA	TCGA-AR-A0TU	ETV1	SNP	Missense_Mutation	7	13946060	C	G	29	100
BRCA	TCGA-AR-A0TU	PDIA4	DEL	In_Frame_Del	7	148709414	TTCTCA	-	56	92
BRCA	TCGA-AR-A0TU	HOXA4	DEL	Frame_Shift_Del	7	27168912	TTTGTGC	-	60	62
BRCA	TCGA-AR-A0TU	DYNC1I1	SNP	Missense_Mutation	7	95726876	G	A	41	93
BRCA	TCGA-AR-A0TU	SLC25A13	SNP	Missense_Mutation	7	95818665	G	A	40	63
BRCA	TCGA-AR-A0TU	ODF1	DEL	Frame_Shift_Del	8	103572897	TG	-	55	60
BRCA	TCGA-AR-A0TU	UBE2R2	SNP	Missense_Mutation	9	33917121	C	G	17	71
BRCA	TCGA-AR-A0TU	TLN1	SNP	Missense_Mutation	9	35711758	G	C	34	86
BRCA	TCGA-AR-A0TU	TRPM6	SNP	Missense_Mutation	9	77435320	T	G	54	78
BRCA	TCGA-AR-A0TU	PRUNE2	SNP	Missense_Mutation	9	79320287	G	C	48	52
BRCA	TCGA-AR-A0TV	GJA5	SNP	Missense_Mutation	1	147230643	C	T	32	56
BRCA	TCGA-AR-A0TV	GATAD2B	SNP	Missense_Mutation	1	153800546	C	T	30	77
BRCA	TCGA-AR-A0TV	TDRD10	SNP	Nonsense_Mutation	1	154516476	C	T	23	52
BRCA	TCGA-AR-A0TV	ZBTB17	SNP	Missense_Mutation	1	16272281	A	C	11	51
BRCA	TCGA-AR-A0TV	MAEL	SNP	Missense_Mutation	1	166962031	C	T	32	84
BRCA	TCGA-AR-A0TV	TNR	SNP	Silent	1	175372322	C	T	26	48
BRCA	TCGA-AR-A0TV	FAM5C	SNP	Missense_Mutation	1	190250765	G	A	44	97
BRCA	TCGA-AR-A0TV	LEPR	SNP	Missense_Mutation	1	66098839	C	T	19	48
BRCA	TCGA-AR-A0TV	CDHR1	SNP	Missense_Mutation	10	85961584	G	A	40	44
BRCA	TCGA-AR-A0TV	SLIT1	SNP	Silent	10	98807512	C	T	21	63
BRCA	TCGA-AR-A0TV	ABCG4	SNP	Silent	11	119027378	G	A	39	28
BRCA	TCGA-AR-A0TV	KIF18A	SNP	Missense_Mutation	11	28042770	T	C	49	74
BRCA	TCGA-AR-A0TV	DEAF1	INS	Frame_Shift_Ins	11	654011	-	A	25	88
BRCA	TCGA-AR-A0TV	FAT3	SNP	Missense_Mutation	11	92592359	C	G	17	66
BRCA	TCGA-AR-A0TV	HEPHL1	SNP	Missense_Mutation	11	93800913	C	A	17	68
BRCA	TCGA-AR-A0TV	CHST11	SNP	Missense_Mutation	12	105150997	G	A	38	66
BRCA	TCGA-AR-A0TV	WDR66	SNP	Missense_Mutation	12	122361879	A	G	6	40
BRCA	TCGA-AR-A0TV	POU6F1	SNP	Missense_Mutation	12	51586227	C	T	19	51
BRCA	TCGA-AR-A0TV	LRRC16B	SNP	Missense_Mutation	14	24527046	A	C	6	82
BRCA	TCGA-AR-A0TV	TGM1	SNP	Missense_Mutation	14	24728371	C	G	22	80
BRCA	TCGA-AR-A0TV	ARID4A	SNP	Missense_Mutation	14	58811468	A	G	3	91
BRCA	TCGA-AR-A0TV	MAX	SNP	Missense_Mutation	14	65543344	C	T	25	75
BRCA	TCGA-AR-A0TV	ZNF48	SNP	Missense_Mutation	16	30410052	G	A	37	59
BRCA	TCGA-AR-A0TV	ADAMTS18	SNP	Missense_Mutation	16	77323239	A	C	11	65
BRCA	TCGA-AR-A0TV	NCOR1	SNP	Missense_Mutation	17	15978874	T	C	64	89
BRCA	TCGA-AR-A0TV	ULK2	SNP	Missense_Mutation	17	19700794	G	A	43	96
BRCA	TCGA-AR-A0TV	KCNJ12	SNP	Missense_Mutation	17	21318946	T	A	60	91
BRCA	TCGA-AR-A0TV	HEATR6	SNP	Missense_Mutation	17	58124731	G	C	33	85
BRCA	TCGA-AR-A0TV	KIF19	SNP	Silent	17	72350488	G	A	38	23
BRCA	TCGA-AR-A0TV	TP53	SNP	Missense_Mutation	17	7578203	C	T	17	96
BRCA	TCGA-AR-A0TV	GCGR	SNP	Splice_Site	17	79769688	T	G	59	89
BRCA	TCGA-AR-A0TV	OR10H2	SNP	Missense_Mutation	19	15839451	G	A	40	51
BRCA	TCGA-AR-A0TV	ZNF43	SNP	Missense_Mutation	19	21992605	C	T	17	50
BRCA	TCGA-AR-A0TV	STXBP2	SNP	Silent	19	7711185	C	G	24	64
BRCA	TCGA-AR-A0TV	CLEC4G	SNP	Silent	19	7794763	G	A	42	44
BRCA	TCGA-AR-A0TV	NEB	SNP	Missense_Mutation	2	152409230	G	T	44	98
BRCA	TCGA-AR-A0TV	NBEAL1	SNP	Missense_Mutation	2	204016280	A	G	8	86
BRCA	TCGA-AR-A0TV	RAPH1	SNP	Missense_Mutation	2	204305920	C	T	19	63
BRCA	TCGA-AR-A0TV	AP1S3	SNP	Missense_Mutation	2	224642566	G	T	45	85
BRCA	TCGA-AR-A0TV	ALPI	SNP	Missense_Mutation	2	233323663	C	T	27	82
BRCA	TCGA-AR-A0TV	C2orf71	SNP	Missense_Mutation	2	29294240	G	A	41	66
BRCA	TCGA-AR-A0TV	SLC4A5	DEL	Frame_Shift_Del	2	74454651	A	-	7	52
BRCA	TCGA-AR-A0TV	MYH7B	SNP	Missense_Mutation	20	33575438	T	C	57	87
BRCA	TCGA-AR-A0TV	MYH7B	SNP	Missense_Mutation	20	33580963	G	A	42	82
BRCA	TCGA-AR-A0TV	SCARF2	SNP	Silent	22	20784108	C	T	19	48
BRCA	TCGA-AR-A0TV	MAPK8IP2	SNP	Missense_Mutation	22	51044277	T	G	59	87
BRCA	TCGA-AR-A0TV	FAM48B1	SNP	Missense_Mutation	23	24381686	A	C	1	49
BRCA	TCGA-AR-A0TV	EFHC2	SNP	Missense_Mutation	23	44091738	T	A	62	51
BRCA	TCGA-AR-A0TV	SYN1	SNP	Missense_Mutation	23	47464683	G	T	34	70
BRCA	TCGA-AR-A0TV	MAGIX	SNP	Silent	23	49019251	C	T	23	47
BRCA	TCGA-AR-A0TV	KIF4A	SNP	Missense_Mutation	23	69639547	G	A	37	77
BRCA	TCGA-AR-A0TV	WDR52	SNP	Missense_Mutation	3	113128161	C	G	29	69
BRCA	TCGA-AR-A0TV	EIF4A2	SNP	Missense_Mutation	3	186502374	G	A	45	90
BRCA	TCGA-AR-A0TV	MUC4	SNP	Silent	3	195511506	T	G	55	50
BRCA	TCGA-AR-A0TV	UBP1	DEL	In_Frame_Del	3	33434069	AAT	-	9	91
BRCA	TCGA-AR-A0TV	PTPRG	SNP	Missense_Mutation	3	61989043	G	C	37	86
BRCA	TCGA-AR-A0TV	KIAA1109	SNP	Silent	4	123202754	T	A	61	55
BRCA	TCGA-AR-A0TV	CLCN3	SNP	Missense_Mutation	4	170634389	T	G	50	91
BRCA	TCGA-AR-A0TV	EPB41L4A	SNP	Missense_Mutation	5	111643142	C	T	19	48
BRCA	TCGA-AR-A0TV	PCDH1	SNP	Nonsense_Mutation	5	141243846	G	A	47	67
BRCA	TCGA-AR-A0TV	FBXO38	SNP	Silent	5	147793787	A	T	7	49
BRCA	TCGA-AR-A0TV	CDH10	SNP	Missense_Mutation	5	24593491	A	T	1	54
BRCA	TCGA-AR-A0TV	MEF2C	SNP	Missense_Mutation	5	88057005	C	A	17	69
BRCA	TCGA-AR-A0TV	TUBB	SNP	Silent	6	30691970	C	T	32	49
BRCA	TCGA-AR-A0TV	KHDRBS2	SNP	Missense_Mutation	6	62611156	G	T	41	70
BRCA	TCGA-AR-A0TV	EGFR	SNP	Missense_Mutation	7	55229270	G	C	46	97
BRCA	TCGA-AR-A0TV	MRPS17	SNP	Missense_Mutation	7	55990862	T	G	55	68
BRCA	TCGA-AR-A0TV	OPRK1	SNP	Missense_Mutation	8	54142245	C	T	19	100
BRCA	TCGA-AR-A0TV	ZC2HC1A	SNP	Silent	8	79601467	A	G	4	54
BRCA	TCGA-AR-A0TV	DCAF4L2	SNP	Missense_Mutation	8	88885211	G	A	38	50
BRCA	TCGA-AR-A0TV	NECAB1	SNP	Missense_Mutation	8	91836960	C	A	30	94
BRCA	TCGA-AR-A0TV	NANS	SNP	Nonsense_Mutation	9	100819126	G	A	43	97
BRCA	TCGA-AR-A0TW	CD1A	SNP	Silent	1	158225118	C	T	19	46
BRCA	TCGA-AR-A0TW	ZNF648	SNP	Missense_Mutation	1	182025629	C	A	17	87
BRCA	TCGA-AR-A0TW	CDC42BPA	SNP	Nonsense_Mutation	1	227235647	G	C	45	69
BRCA	TCGA-AR-A0TW	DOCK7	SNP	Missense_Mutation	1	62979452	A	C	11	92
BRCA	TCGA-AR-A0TW	SLC44A5	SNP	Splice_Site	1	75683550	C	T	19	99
BRCA	TCGA-AR-A0TW	GATA3	INS	Frame_Shift_Ins	10	8115853	-	G	51	79
BRCA	TCGA-AR-A0TW	API5	SNP	Missense_Mutation	11	43352111	C	G	29	69
BRCA	TCGA-AR-A0TW	ENSG00000181943	SNP	Missense_Mutation	11	55258848	A	G	8	70
BRCA	TCGA-AR-A0TW	TRIM6	SNP	Silent	11	5626735	C	T	28	64
BRCA	TCGA-AR-A0TW	FAT3	SNP	Silent	11	92533961	T	C	51	56
BRCA	TCGA-AR-A0TW	GLT1D1	SNP	Missense_Mutation	12	129373285	G	T	34	83
BRCA	TCGA-AR-A0TW	ENSG00000230291	SNP	Missense_Mutation	12	80496825	T	C	51	64
BRCA	TCGA-AR-A0TW	TMCO3	SNP	Missense_Mutation	13	114202762	C	T	31	64
BRCA	TCGA-AR-A0TW	SLC25A21	SNP	Missense_Mutation	14	37180577	G	C	48	64
BRCA	TCGA-AR-A0TW	ADAM21	SNP	Missense_Mutation	14	70924295	G	A	39	49
BRCA	TCGA-AR-A0TW	GRIN2A	SNP	Missense_Mutation	16	10031859	C	A	23	75
BRCA	TCGA-AR-A0TW	ZNF434	SNP	Missense_Mutation	16	3432988	T	C	64	54
BRCA	TCGA-AR-A0TW	CNOT1	SNP	Silent	16	58610448	T	C	63	42
BRCA	TCGA-AR-A0TW	NCOR1	SNP	Nonsense_Mutation	17	15965036	T	A	54	54
BRCA	TCGA-AR-A0TW	TTLL6	SNP	Missense_Mutation	17	46878982	C	T	23	91
BRCA	TCGA-AR-A0TW	EVPL	SNP	Silent	17	74004924	G	A	47	41
BRCA	TCGA-AR-A0TW	ZNF521	SNP	Missense_Mutation	18	22805247	C	T	19	83
BRCA	TCGA-AR-A0TW	KLK7	SNP	Silent	19	51480873	G	C	42	56
BRCA	TCGA-AR-A0TW	ZNF160	SNP	Missense_Mutation	19	53572793	G	A	37	51
BRCA	TCGA-AR-A0TW	CAMSAP3	SNP	Nonsense_Mutation	19	7682695	C	T	21	97
BRCA	TCGA-AR-A0TW	ACOXL	SNP	Missense_Mutation	2	111806831	G	T	48	76
BRCA	TCGA-AR-A0TW	HSPD1	SNP	Missense_Mutation	2	198361901	C	A	32	72
BRCA	TCGA-AR-A0TW	STK11IP	SNP	Missense_Mutation	2	220473425	G	T	38	59
BRCA	TCGA-AR-A0TW	CPNE1	SNP	Splice_Site	20	34220172	T	C	53	53
BRCA	TCGA-AR-A0TW	LAMA5	SNP	Missense_Mutation	20	60902626	C	T	26	81
BRCA	TCGA-AR-A0TW	YTHDF1	SNP	Silent	20	61833786	G	A	45	55
BRCA	TCGA-AR-A0TW	YTHDF1	SNP	Silent	20	61834026	G	A	48	55
BRCA	TCGA-AR-A0TW	TRIOBP	SNP	Missense_Mutation	22	38120742	C	T	19	50
BRCA	TCGA-AR-A0TW	GPR112	SNP	Missense_Mutation	23	135445675	G	T	34	46
BRCA	TCGA-AR-A0TW	GDI1	SNP	Missense_Mutation	23	153668377	G	C	43	91
BRCA	TCGA-AR-A0TW	DKC1	SNP	Missense_Mutation	23	153993215	A	G	9	77
BRCA	TCGA-AR-A0TW	CDKL5	SNP	Silent	23	18593511	T	G	61	59
BRCA	TCGA-AR-A0TW	SPICE1	SNP	Silent	3	113176140	G	A	41	40
BRCA	TCGA-AR-A0TW	DALRD3	SNP	Missense_Mutation	3	49053694	C	T	19	80
BRCA	TCGA-AR-A0TW	MTMR14	SNP	Nonsense_Mutation	3	9730630	C	T	19	58
BRCA	TCGA-AR-A0TW	IL17RC	SNP	Missense_Mutation	3	9974346	C	A	27	46
BRCA	TCGA-AR-A0TW	WDR17	SNP	Silent	4	177077232	G	T	43	97
BRCA	TCGA-AR-A0TW	RFC1	SNP	Silent	4	39297290	C	T	19	48
BRCA	TCGA-AR-A0TW	GK2	SNP	Missense_Mutation	4	80328163	C	T	32	74
BRCA	TCGA-AR-A0TW	BRD8	SNP	Missense_Mutation	5	137476527	C	T	23	55
BRCA	TCGA-AR-A0TW	PCDHA13	SNP	Nonsense_Mutation	5	140262304	C	T	31	50
BRCA	TCGA-AR-A0TW	GRIA1	SNP	Missense_Mutation	5	153065885	G	A	37	78
BRCA	TCGA-AR-A0TW	C5orf25	SNP	Missense_Mutation	5	175763760	C	T	27	77
BRCA	TCGA-AR-A0TW	PKHD1	SNP	Missense_Mutation	6	51524412	C	A	32	64
BRCA	TCGA-AR-A0TW	SAMD9	SNP	Missense_Mutation	7	92732742	G	T	44	44
BRCA	TCGA-AR-A0TW	DPYSL2	SNP	Missense_Mutation	8	26484767	G	A	38	100
BRCA	TCGA-AR-A0TW	PXDNL	SNP	Silent	8	52287216	C	A	21	56
BRCA	TCGA-AR-A0TX	CASZ1	SNP	Silent	1	10720544	G	A	41	69
BRCA	TCGA-AR-A0TX	GPSM2	SNP	Missense_Mutation	1	109466650	C	A	17	56
BRCA	TCGA-AR-A0TX	PTPN22	SNP	Missense_Mutation	1	114380586	G	C	33	62
BRCA	TCGA-AR-A0TX	PTPN22	SNP	Missense_Mutation	1	114380881	G	C	33	49
BRCA	TCGA-AR-A0TX	PTCHD2	SNP	Missense_Mutation	1	11584097	G	A	45	78
BRCA	TCGA-AR-A0TX	NUP210L	SNP	Missense_Mutation	1	154030634	G	A	47	83
BRCA	TCGA-AR-A0TX	GON4L	SNP	Missense_Mutation	1	155721824	C	A	26	55
BRCA	TCGA-AR-A0TX	TMEM82	SNP	Missense_Mutation	1	16074093	C	T	31	58
BRCA	TCGA-AR-A0TX	SPEN	SNP	Nonsense_Mutation	1	16260482	G	T	33	66
BRCA	TCGA-AR-A0TX	HSD17B7	SNP	Silent	1	162769553	C	G	30	40
BRCA	TCGA-AR-A0TX	NCF2	SNP	Silent	1	183559438	G	C	33	50
BRCA	TCGA-AR-A0TX	UBR4	SNP	Missense_Mutation	1	19464532	C	T	32	96
BRCA	TCGA-AR-A0TX	ADORA1	SNP	Silent	1	203134926	G	A	33	54
BRCA	TCGA-AR-A0TX	NUAK2	SNP	Missense_Mutation	1	205273335	G	T	41	83
BRCA	TCGA-AR-A0TX	OBSCN	SNP	Silent	1	228467538	C	T	29	42
BRCA	TCGA-AR-A0TX	OR2T34	SNP	Silent	1	248737567	G	A	45	53
BRCA	TCGA-AR-A0TX	ZMYM4	SNP	Missense_Mutation	1	35835996	C	G	29	85
BRCA	TCGA-AR-A0TX	FOXJ3	SNP	Missense_Mutation	1	42654583	C	G	29	80
BRCA	TCGA-AR-A0TX	CYP4Z1	SNP	Nonsense_Mutation	1	47581263	C	T	29	23
BRCA	TCGA-AR-A0TX	ROR1	SNP	Nonsense_Mutation	1	64624667	C	G	29	69
BRCA	TCGA-AR-A0TX	LEPR	SNP	Silent	1	66085699	C	T	29	53
BRCA	TCGA-AR-A0TX	LRRC7	SNP	Missense_Mutation	1	70291445	C	G	30	92
BRCA	TCGA-AR-A0TX	EVI5	SNP	Missense_Mutation	1	93170218	G	A	45	97
BRCA	TCGA-AR-A0TX	CLSTN1	SNP	Silent	1	9809658	G	A	39	31
BRCA	TCGA-AR-A0TX	ABCC2	SNP	Missense_Mutation	10	101606856	G	A	37	74
BRCA	TCGA-AR-A0TX	C10orf76	SNP	Silent	10	103699622	G	A	45	65
BRCA	TCGA-AR-A0TX	TAF5	SNP	Silent	10	105143101	C	T	19	66
BRCA	TCGA-AR-A0TX	DCLRE1C	SNP	Missense_Mutation	10	14977484	C	G	30	100
BRCA	TCGA-AR-A0TX	YME1L1	SNP	Missense_Mutation	10	27412521	C	G	29	100
BRCA	TCGA-AR-A0TX	ZFAND4	SNP	Missense_Mutation	10	46143787	T	C	50	54
BRCA	TCGA-AR-A0TX	WDFY4	SNP	Missense_Mutation	10	50030439	C	A	29	82
BRCA	TCGA-AR-A0TX	FAM13C	SNP	Nonsense_Mutation	10	61029863	G	T	45	49
BRCA	TCGA-AR-A0TX	ANK3	SNP	Missense_Mutation	10	62038849	C	G	29	100
BRCA	TCGA-AR-A0TX	FAM35A	SNP	Missense_Mutation	10	88946909	G	A	33	64
BRCA	TCGA-AR-A0TX	DYNC2H1	SNP	Missense_Mutation	11	103156999	C	G	32	68
BRCA	TCGA-AR-A0TX	RDX	SNP	Missense_Mutation	11	110104054	C	G	29	86
BRCA	TCGA-AR-A0TX	MLL	SNP	Nonsense_Mutation	11	118344572	C	T	29	73
BRCA	TCGA-AR-A0TX	HEPACAM	SNP	Silent	11	124805830	G	A	33	63
BRCA	TCGA-AR-A0TX	HYLS1	SNP	Missense_Mutation	11	125769890	G	C	33	53
BRCA	TCGA-AR-A0TX	USH1C	SNP	Missense_Mutation	11	17531162	G	A	33	88
BRCA	TCGA-AR-A0TX	RIC8A	SNP	Nonsense_Mutation	11	209437	G	T	41	70
BRCA	TCGA-AR-A0TX	LRP4	SNP	Missense_Mutation	11	46893148	C	G	32	69
BRCA	TCGA-AR-A0TX	C11orf49	DEL	Frame_Shift_Del	11	47178576	T	-	52	85
BRCA	TCGA-AR-A0TX	SLC39A13	SNP	Silent	11	47434989	C	G	29	61
BRCA	TCGA-AR-A0TX	TRIM49B	SNP	Missense_Mutation	11	49055873	G	A	41	41
BRCA	TCGA-AR-A0TX	OR5W2	SNP	Silent	11	55681414	G	A	45	39
BRCA	TCGA-AR-A0TX	STX3	SNP	Missense_Mutation	11	59554516	G	A	41	93
BRCA	TCGA-AR-A0TX	STX3	SNP	Silent	11	59554572	C	G	32	47
BRCA	TCGA-AR-A0TX	PLAC1L	SNP	Missense_Mutation	11	59814505	G	A	33	58
BRCA	TCGA-AR-A0TX	DDB1	SNP	Missense_Mutation	11	61099077	G	A	37	73
BRCA	TCGA-AR-A0TX	FAM160A2	SNP	Missense_Mutation	11	6232761	G	A	45	77
BRCA	TCGA-AR-A0TX	RTN3	SNP	Nonsense_Mutation	11	63486546	C	A	29	60
BRCA	TCGA-AR-A0TX	KLC2	SNP	Missense_Mutation	11	66026285	G	A	41	92
BRCA	TCGA-AR-A0TX	DCHS1	SNP	Missense_Mutation	11	6661191	C	T	32	98
BRCA	TCGA-AR-A0TX	CHCHD8	SNP	Missense_Mutation	11	73584201	C	T	30	66
BRCA	TCGA-AR-A0TX	CEND1	SNP	Silent	11	788469	C	T	29	31
BRCA	TCGA-AR-A0TX	PRSS23	SNP	Missense_Mutation	11	86519317	C	T	29	80
BRCA	TCGA-AR-A0TX	GPR83	SNP	Nonsense_Mutation	11	94129617	G	C	45	99
BRCA	TCGA-AR-A0TX	SLC24A6	SNP	Silent	12	113754439	G	A	33	48
BRCA	TCGA-AR-A0TX	UNC119B	SNP	Missense_Mutation	12	121151105	C	G	32	70
BRCA	TCGA-AR-A0TX	KNTC1	SNP	Missense_Mutation	12	123069500	G	A	33	69
BRCA	TCGA-AR-A0TX	DNAH10	SNP	Silent	12	124362321	G	A	45	58
BRCA	TCGA-AR-A0TX	EPS8	DEL	Frame_Shift_Del	12	15774268	C	-	29	92
BRCA	TCGA-AR-A0TX	EPS8	SNP	Missense_Mutation	12	15774271	C	T	29	92
BRCA	TCGA-AR-A0TX	PIK3C2G	SNP	Missense_Mutation	12	18573885	C	G	29	76
BRCA	TCGA-AR-A0TX	ABCC9	SNP	Missense_Mutation	12	22086720	C	G	32	78
BRCA	TCGA-AR-A0TX	FGD4	SNP	Silent	12	32791666	G	A	33	75
BRCA	TCGA-AR-A0TX	ARID2	SNP	Nonsense_Mutation	12	46245928	C	G	29	61
BRCA	TCGA-AR-A0TX	RDH5	SNP	Silent	12	56118164	G	A	45	64
BRCA	TCGA-AR-A0TX	ERBB3	SNP	Missense_Mutation	12	56487147	G	C	45	71
BRCA	TCGA-AR-A0TX	ESYT1	SNP	Missense_Mutation	12	56526236	G	A	37	54
BRCA	TCGA-AR-A0TX	LRIG3	SNP	Missense_Mutation	12	59274492	C	T	31	100
BRCA	TCGA-AR-A0TX	B4GALNT3	SNP	Silent	12	663141	G	A	41	76
BRCA	TCGA-AR-A0TX	ZFC3H1	SNP	Missense_Mutation	12	72026676	T	C	50	67
BRCA	TCGA-AR-A0TX	TBC1D15	SNP	Missense_Mutation	12	72307641	C	G	32	63
BRCA	TCGA-AR-A0TX	GAS6	SNP	Silent	13	114529991	G	A	37	51
BRCA	TCGA-AR-A0TX	N6AMT2	SNP	Missense_Mutation	13	21331700	G	C	33	69
BRCA	TCGA-AR-A0TX	CENPJ	SNP	Missense_Mutation	13	25459796	C	T	31	50
BRCA	TCGA-AR-A0TX	NDFIP2	SNP	Missense_Mutation	13	80125187	C	G	32	63
BRCA	TCGA-AR-A0TX	METTL17	SNP	Missense_Mutation	14	21460707	G	A	45	77
BRCA	TCGA-AR-A0TX	FLJ10357	SNP	Silent	14	21551001	C	T	29	62
BRCA	TCGA-AR-A0TX	SALL2	SNP	Silent	14	21991732	G	A	41	51
BRCA	TCGA-AR-A0TX	OR4E2	SNP	Silent	14	22133492	C	T	32	61
BRCA	TCGA-AR-A0TX	PPP2R3C	SNP	Missense_Mutation	14	35554936	G	C	33	72
BRCA	TCGA-AR-A0TX	PPP2R3C	SNP	Missense_Mutation	14	35568480	G	C	33	75
BRCA	TCGA-AR-A0TX	SYNE2	SNP	Missense_Mutation	14	64496655	T	A	62	53
BRCA	TCGA-AR-A0TX	SYNE2	SNP	Missense_Mutation	14	64630264	G	A	41	72
BRCA	TCGA-AR-A0TX	ACOT4	SNP	Missense_Mutation	14	74062026	G	C	33	82
BRCA	TCGA-AR-A0TX	NRXN3	SNP	Missense_Mutation	14	79270156	G	A	47	79
BRCA	TCGA-AR-A0TX	CEP128	SNP	Nonsense_Mutation	14	80971345	C	A	30	63
BRCA	TCGA-AR-A0TX	FOXN3	SNP	Missense_Mutation	14	89629149	G	A	45	77
BRCA	TCGA-AR-A0TX	FAM189A1	SNP	Missense_Mutation	15	29415586	C	G	31	51
BRCA	TCGA-AR-A0TX	ELL3	SNP	Missense_Mutation	15	44068711	C	T	31	74
BRCA	TCGA-AR-A0TX	B2M	SNP	Missense_Mutation	15	45003751	C	T	31	49
BRCA	TCGA-AR-A0TX	DTWD1	SNP	Missense_Mutation	15	49935542	G	C	45	79
BRCA	TCGA-AR-A0TX	PLEKHO2	SNP	Missense_Mutation	15	65157503	G	A	45	58
BRCA	TCGA-AR-A0TX	NEO1	SNP	Missense_Mutation	15	73562365	G	A	45	100
BRCA	TCGA-AR-A0TX	BLM	SNP	Missense_Mutation	15	91352454	C	T	29	69
BRCA	TCGA-AR-A0TX	ATF7IP2	SNP	Missense_Mutation	16	10567815	G	C	45	53
BRCA	TCGA-AR-A0TX	SNX29	SNP	Silent	16	12155475	C	T	29	61
BRCA	TCGA-AR-A0TX	POLR3E	SNP	Nonsense_Mutation	16	22337444	C	T	29	57
BRCA	TCGA-AR-A0TX	CDR2	SNP	Missense_Mutation	16	22358885	C	T	32	68
BRCA	TCGA-AR-A0TX	C16orf79	SNP	Silent	16	2260649	C	T	29	65
BRCA	TCGA-AR-A0TX	SCNN1G	SNP	Silent	16	23200836	C	T	32	62
BRCA	TCGA-AR-A0TX	RABEP2	SNP	Missense_Mutation	16	28931193	C	G	29	92
BRCA	TCGA-AR-A0TX	ZNF597	SNP	Missense_Mutation	16	3486428	G	A	40	42
BRCA	TCGA-AR-A0TX	GNAO1	SNP	Missense_Mutation	16	56368657	G	A	41	100
BRCA	TCGA-AR-A0TX	HYDIN	SNP	Missense_Mutation	16	70884449	C	T	31	60
BRCA	TCGA-AR-A0TX	ZNF821	SNP	Missense_Mutation	16	71894091	C	G	30	100
BRCA	TCGA-AR-A0TX	ZNF821	SNP	Silent	16	71895828	C	T	29	68
BRCA	TCGA-AR-A0TX	TUBB3	SNP	Missense_Mutation	16	90001832	G	C	41	97
BRCA	TCGA-AR-A0TX	MYH1	SNP	Missense_Mutation	17	10404042	G	C	33	62
BRCA	TCGA-AR-A0TX	SLFN11	SNP	Missense_Mutation	17	33690742	C	G	32	46
BRCA	TCGA-AR-A0TX	RASL10B	SNP	Missense_Mutation	17	34067512	G	A	45	97
BRCA	TCGA-AR-A0TX	KRTAP4-2	SNP	Missense_Mutation	17	39334385	G	C	33	58
BRCA	TCGA-AR-A0TX	HAP1	SNP	Missense_Mutation	17	39887784	C	T	29	53
BRCA	TCGA-AR-A0TX	CCDC47	SNP	Nonsense_Mutation	17	61838664	G	A	47	99
BRCA	TCGA-AR-A0TX	DDX42	SNP	Missense_Mutation	17	61895420	C	T	31	65
BRCA	TCGA-AR-A0TX	SOX9	SNP	Splice_site	17	70120527	G	C	45	61
BRCA	TCGA-AR-A0TX	TP53	SNP	Missense_Mutation	17	7578235	T	C	49	76
BRCA	TCGA-AR-A0TX	TNRC6C	SNP	Missense_Mutation	17	76071354	G	C	45	99
BRCA	TCGA-AR-A0TX	KDM6B	SNP	Missense_Mutation	17	7754985	G	A	41	98
BRCA	TCGA-AR-A0TX	LRRC45	SNP	Missense_Mutation	17	79986381	G	A	37	75
BRCA	TCGA-AR-A0TX	RFNG	SNP	Silent	17	80007814	G	C	45	53
BRCA	TCGA-AR-A0TX	FAM38B	SNP	Missense_Mutation	18	10770164	G	C	33	70
BRCA	TCGA-AR-A0TX	POTEC	SNP	Missense_Mutation	18	14538183	C	T	31	57
BRCA	TCGA-AR-A0TX	SMCHD1	SNP	Missense_Mutation	18	2700630	G	A	37	95
BRCA	TCGA-AR-A0TX	GALNT1	SNP	Splice_site	18	33289733	G	C	45	71
BRCA	TCGA-AR-A0TX	WDR7	SNP	Nonsense_Mutation	18	54424178	C	G	29	100
BRCA	TCGA-AR-A0TX	DOK6	SNP	Missense_Mutation	18	67068499	G	A	37	88
BRCA	TCGA-AR-A0TX	ZNF236	SNP	Silent	18	74611135	C	T	30	49
BRCA	TCGA-AR-A0TX	COL5A3	SNP	Nonsense_Mutation	19	10108093	G	C	45	57
BRCA	TCGA-AR-A0TX	KANK2	SNP	Missense_Mutation	19	11283661	C	G	28	100
BRCA	TCGA-AR-A0TX	CACNA1A	SNP	Silent	19	13418659	G	A	37	50
BRCA	TCGA-AR-A0TX	RFX1	SNP	Missense_Mutation	19	14080963	C	G	29	98
BRCA	TCGA-AR-A0TX	ANO8	SNP	Missense_Mutation	19	17444235	C	G	29	91
BRCA	TCGA-AR-A0TX	ZNF556	SNP	Missense_Mutation	19	2877800	G	A	38	65
BRCA	TCGA-AR-A0TX	TLE6	SNP	Missense_Mutation	19	2987056	G	C	45	45
BRCA	TCGA-AR-A0TX	DMKN	SNP	Missense_Mutation	19	35990898	C	A	25	50
BRCA	TCGA-AR-A0TX	NPHS1	SNP	Silent	19	36336322	G	A	48	60
BRCA	TCGA-AR-A0TX	ZNF585B	SNP	Missense_Mutation	19	37676240	C	G	29	51
BRCA	TCGA-AR-A0TX	PAF1	SNP	Silent	19	39876572	G	A	33	56
BRCA	TCGA-AR-A0TX	C19orf47	SNP	Silent	19	40834429	C	T	29	76
BRCA	TCGA-AR-A0TX	TMEM145	SNP	Missense_Mutation	19	42818951	C	T	29	66
BRCA	TCGA-AR-A0TX	CLASRP	SNP	Missense_Mutation	19	45572374	G	A	45	73
BRCA	TCGA-AR-A0TX	PPP1R13L	SNP	Missense_Mutation	19	45899449	C	G	30	79
BRCA	TCGA-AR-A0TX	PPP1R13L	SNP	Missense_Mutation	19	45899461	C	T	30	67
BRCA	TCGA-AR-A0TX	SPHK2	SNP	Missense_Mutation	19	49132338	C	T	32	62
BRCA	TCGA-AR-A0TX	ALDH16A1	SNP	Missense_Mutation	19	49965915	G	A	37	46
BRCA	TCGA-AR-A0TX	SIGLEC9	SNP	Silent	19	51630516	C	T	31	50
BRCA	TCGA-AR-A0TX	SHISA7	SNP	Silent	19	55948979	C	T	32	51
BRCA	TCGA-AR-A0TX	ZNF671	SNP	Silent	19	58232983	G	C	45	38
BRCA	TCGA-AR-A0TX	ZNF446	SNP	Silent	19	58991184	C	T	21	42
BRCA	TCGA-AR-A0TX	SLC25A41	SNP	Missense_Mutation	19	6427163	C	G	32	72
BRCA	TCGA-AR-A0TX	PRSS57	SNP	Missense_Mutation	19	694935	C	G	31	73
BRCA	TCGA-AR-A0TX	ZNF358	SNP	Missense_Mutation	19	7585539	C	G	32	48
BRCA	TCGA-AR-A0TX	CAMSAP3	SNP	Missense_Mutation	19	7677124	G	C	41	50
BRCA	TCGA-AR-A0TX	KANK3	SNP	Missense_Mutation	19	8399284	C	T	29	93
BRCA	TCGA-AR-A0TX	MUC16	SNP	Nonsense_Mutation	19	9066267	G	C	45	46
BRCA	TCGA-AR-A0TX	GCC2	SNP	Missense_Mutation	2	109109048	G	C	33	98
BRCA	TCGA-AR-A0TX	RANBP2	SNP	Nonsense_Mutation	2	109380099	C	G	29	86
BRCA	TCGA-AR-A0TX	ZC3H6	SNP	Missense_Mutation	2	113089934	G	A	45	96
BRCA	TCGA-AR-A0TX	ROCK2	SNP	Missense_Mutation	2	11332346	C	G	32	100
BRCA	TCGA-AR-A0TX	EPB41L5	SNP	Missense_Mutation	2	120848015	C	G	32	67
BRCA	TCGA-AR-A0TX	KYNU	SNP	Missense_Mutation	2	143746426	C	G	32	49
BRCA	TCGA-AR-A0TX	KIF5C	SNP	Missense_Mutation	2	149835493	G	C	41	100
BRCA	TCGA-AR-A0TX	NBAS	SNP	Missense_Mutation	2	15449336	C	T	29	93
BRCA	TCGA-AR-A0TX	BAZ2B	SNP	Missense_Mutation	2	160231237	C	T	29	95
BRCA	TCGA-AR-A0TX	KCNH7	SNP	Missense_Mutation	2	163241275	G	A	46	60
BRCA	TCGA-AR-A0TX	ABCB11	SNP	Missense_Mutation	2	169826001	C	A	32	100
BRCA	TCGA-AR-A0TX	LRP2	SNP	Missense_Mutation	2	170097843	C	T	29	100
BRCA	TCGA-AR-A0TX	MYO3B	SNP	Missense_Mutation	2	171355142	G	C	46	57
BRCA	TCGA-AR-A0TX	GAD1	SNP	Missense_Mutation	2	171709249	C	T	29	100
BRCA	TCGA-AR-A0TX	TTN	SNP	Missense_Mutation	2	179429698	C	G	30	100
BRCA	TCGA-AR-A0TX	TTN	SNP	Missense_Mutation	2	179456070	C	T	29	100
BRCA	TCGA-AR-A0TX	TTN	SNP	Silent	2	179650716	G	A	39	53
BRCA	TCGA-AR-A0TX	CWC22	SNP	Missense_Mutation	2	180851479	C	G	32	55
BRCA	TCGA-AR-A0TX	DNAH7	SNP	Missense_Mutation	2	196749517	G	A	45	79
BRCA	TCGA-AR-A0TX	STK17B	SNP	Nonsense_Mutation	2	197010664	G	A	45	80
BRCA	TCGA-AR-A0TX	HECW2	SNP	Missense_Mutation	2	197105211	C	G	32	76
BRCA	TCGA-AR-A0TX	STRADB	SNP	Silent	2	202342409	C	T	32	63
BRCA	TCGA-AR-A0TX	FARSB	SNP	Missense_Mutation	2	223464670	C	T	30	84
BRCA	TCGA-AR-A0TX	NLRC4	SNP	Missense_Mutation	2	32474920	C	G	20	63
BRCA	TCGA-AR-A0TX	BIRC6	SNP	Missense_Mutation	2	32770872	C	T	32	100
BRCA	TCGA-AR-A0TX	RNASEH1	SNP	Missense_Mutation	2	3605784	G	C	37	42
BRCA	TCGA-AR-A0TX	ARHGEF33	SNP	Nonsense_Mutation	2	39184142	C	T	29	85
BRCA	TCGA-AR-A0TX	SOS1	SNP	Missense_Mutation	2	39214691	C	T	29	100
BRCA	TCGA-AR-A0TX	SLC8A1	SNP	Missense_Mutation	2	40655984	G	C	45	64
BRCA	TCGA-AR-A0TX	ABCG5	SNP	Silent	2	44065696	G	C	41	50
BRCA	TCGA-AR-A0TX	SLC3A1	SNP	Nonsense_Mutation	2	44540987	C	G	29	68
BRCA	TCGA-AR-A0TX	SLC3A1	SNP	Nonsense_Mutation	2	44541065	C	G	29	62
BRCA	TCGA-AR-A0TX	CCDC88A	SNP	Missense_Mutation	2	55530210	G	A	41	98
BRCA	TCGA-AR-A0TX	SMEK2	SNP	Missense_Mutation	2	55791554	C	T	29	89
BRCA	TCGA-AR-A0TX	USP34	SNP	Missense_Mutation	2	61468708	G	A	45	100
BRCA	TCGA-AR-A0TX	ETAA1	SNP	Missense_Mutation	2	67637053	G	C	33	52
BRCA	TCGA-AR-A0TX	ARHGAP25	SNP	Missense_Mutation	2	69034499	C	T	29	83
BRCA	TCGA-AR-A0TX	ZNF638	SNP	Silent	2	71591252	C	T	29	53
BRCA	TCGA-AR-A0TX	MOGS	SNP	Missense_Mutation	2	74688908	G	C	45	81
BRCA	TCGA-AR-A0TX	MRPL53	SNP	Missense_Mutation	2	74699718	C	G	31	75
BRCA	TCGA-AR-A0TX	THNSL2	SNP	Splice_site	2	88474160	C	T	32	97
BRCA	TCGA-AR-A0TX	THNSL2	SNP	Missense_Mutation	2	88474177	C	G	29	73
BRCA	TCGA-AR-A0TX	SIRPB2	SNP	Missense_Mutation	20	1460486	C	T	32	71
BRCA	TCGA-AR-A0TX	FAM83C	SNP	Silent	20	33876299	G	A	45	75
BRCA	TCGA-AR-A0TX	ADRA1D	SNP	Silent	20	4229170	C	T	29	51
BRCA	TCGA-AR-A0TX	WFDC6	SNP	Missense_Mutation	20	44163071	G	A	41	50
BRCA	TCGA-AR-A0TX	ACOT8	SNP	Missense_Mutation	20	44472970	G	A	41	79
BRCA	TCGA-AR-A0TX	ACOT8	SNP	Silent	20	44473023	G	A	45	55
BRCA	TCGA-AR-A0TX	SYCP2	SNP	Missense_Mutation	20	58441426	G	C	41	55
BRCA	TCGA-AR-A0TX	CHGB	SNP	Missense_Mutation	20	5904085	C	T	32	45
BRCA	TCGA-AR-A0TX	MYT1	SNP	Missense_Mutation	20	62854671	G	C	33	77
BRCA	TCGA-AR-A0TX	ADAMTS1	SNP	Missense_Mutation	21	28212328	C	G	32	97
BRCA	TCGA-AR-A0TX	SSTR3	SNP	Missense_Mutation	22	37602828	C	T	30	84
BRCA	TCGA-AR-A0TX	PIM3	SNP	Missense_Mutation	22	50356707	G	A	45	73
BRCA	TCGA-AR-A0TX	TUBGCP6	SNP	Missense_Mutation	22	50658734	G	C	41	42
BRCA	TCGA-AR-A0TX	ARMCX5	SNP	Silent	23	101858368	T	C	49	48
BRCA	TCGA-AR-A0TX	RAB40AL	SNP	Missense_Mutation	23	102192645	G	C	33	59
BRCA	TCGA-AR-A0TX	NXF3	SNP	Missense_Mutation	23	102338141	C	G	32	62
BRCA	TCGA-AR-A0TX	NRK	SNP	Silent	23	105193653	C	T	22	45
BRCA	TCGA-AR-A0TX	CXorf57	SNP	Missense_Mutation	23	105879798	G	C	45	79
BRCA	TCGA-AR-A0TX	LRCH2	SNP	Silent	23	114384630	G	A	33	62
BRCA	TCGA-AR-A0TX	GRIA3	SNP	Splice_Site	23	122460065	G	T	44	94
BRCA	TCGA-AR-A0TX	DCAF12L1	SNP	Missense_Mutation	23	125685470	G	C	33	65
BRCA	TCGA-AR-A0TX	SOX3	SNP	Silent	23	139586809	C	T	29	50
BRCA	TCGA-AR-A0TX	GPR64	SNP	Silent	23	19028892	G	A	37	53
BRCA	TCGA-AR-A0TX	RPS6KA3	SNP	Silent	23	20174329	C	T	32	63
BRCA	TCGA-AR-A0TX	UBA1	SNP	Splice_site	23	47070624	G	A	47	94
BRCA	TCGA-AR-A0TX	HDAC6	SNP	Missense_Mutation	23	48681327	G	C	33	59
BRCA	TCGA-AR-A0TX	ITIH6	SNP	Silent	23	54785121	C	T	29	56
BRCA	TCGA-AR-A0TX	ARHGEF9	SNP	Missense_Mutation	23	62885817	G	T	44	71
BRCA	TCGA-AR-A0TX	MED12	SNP	Missense_Mutation	23	70352039	G	C	33	51
BRCA	TCGA-AR-A0TX	KIAA2022	SNP	Missense_Mutation	23	73962610	C	G	32	54
BRCA	TCGA-AR-A0TX	ATP7A	SNP	Missense_Mutation	23	77294386	G	A	45	95
BRCA	TCGA-AR-A0TX	ALCAM	SNP	Missense_Mutation	3	105271008	G	A	45	86
BRCA	TCGA-AR-A0TX	GOLGB1	SNP	Silent	3	121415752	G	A	45	47
BRCA	TCGA-AR-A0TX	CASR	SNP	Missense_Mutation	3	121975980	G	A	41	100
BRCA	TCGA-AR-A0TX	PARP9	SNP	Missense_Mutation	3	122247483	C	T	29	77
BRCA	TCGA-AR-A0TX	TRIM59	SNP	Silent	3	160155837	G	A	33	37
BRCA	TCGA-AR-A0TX	PHC3	SNP	Nonsense_Mutation	3	169847254	G	A	45	84
BRCA	TCGA-AR-A0TX	PLD1	SNP	Missense_Mutation	3	171442510	C	T	32	90
BRCA	TCGA-AR-A0TX	ATP13A4	SNP	Nonsense_Mutation	3	193151690	G	C	45	70
BRCA	TCGA-AR-A0TX	LRRC15	SNP	Missense_Mutation	3	194081543	G	A	45	68
BRCA	TCGA-AR-A0TX	ATP13A3	SNP	Missense_Mutation	3	194158079	C	T	28	100
BRCA	TCGA-AR-A0TX	MUC4	SNP	Missense_Mutation	3	195511634	G	C	33	44
BRCA	TCGA-AR-A0TX	DLG1	SNP	Nonsense_Mutation	3	197023229	G	A	45	92
BRCA	TCGA-AR-A0TX	LRRN1	SNP	Missense_Mutation	3	3888343	C	G	32	98
BRCA	TCGA-AR-A0TX	CDCP1	SNP	Missense_Mutation	3	45127171	G	T	41	70
BRCA	TCGA-AR-A0TX	CCR2	SNP	Missense_Mutation	3	46399034	C	T	31	49
BRCA	TCGA-AR-A0TX	SETD2	SNP	Nonsense_Mutation	3	47165587	G	C	45	63
BRCA	TCGA-AR-A0TX	LAMB2	SNP	Silent	3	49160162	G	A	41	79
BRCA	TCGA-AR-A0TX	USP4	SNP	Missense_Mutation	3	49348063	G	C	41	97
BRCA	TCGA-AR-A0TX	AMIGO3	SNP	Silent	3	49756806	G	C	41	49
BRCA	TCGA-AR-A0TX	PBRM1	SNP	Missense_Mutation	3	52668737	C	G	30	57
BRCA	TCGA-AR-A0TX	CENPE	SNP	Silent	4	104081791	C	T	29	49
BRCA	TCGA-AR-A0TX	CXXC4	SNP	Silent	4	105412003	G	A	36	95
BRCA	TCGA-AR-A0TX	TET2	SNP	Nonsense_Mutation	4	106196474	C	T	29	78
BRCA	TCGA-AR-A0TX	C4orf21	SNP	Missense_Mutation	4	113540297	C	G	32	55
BRCA	TCGA-AR-A0TX	USP53	SNP	Missense_Mutation	4	120190905	C	G	32	58
BRCA	TCGA-AR-A0TX	USP38	SNP	Silent	4	144119005	G	A	45	70
BRCA	TCGA-AR-A0TX	FAM160A1	SNP	Silent	4	152499108	C	T	29	74
BRCA	TCGA-AR-A0TX	RAPGEF2	SNP	Missense_Mutation	4	160264511	G	A	37	100
BRCA	TCGA-AR-A0TX	FSTL5	SNP	Missense_Mutation	4	162680647	C	G	29	83
BRCA	TCGA-AR-A0TX	N4BP2	SNP	Missense_Mutation	4	40124825	C	T	32	89
BRCA	TCGA-AR-A0TX	ATP10D	SNP	Missense_Mutation	4	47538793	G	A	45	80
BRCA	TCGA-AR-A0TX	EPHA5	SNP	Missense_Mutation	4	66201769	C	T	25	100
BRCA	TCGA-AR-A0TX	UBA6	SNP	Missense_Mutation	4	68539460	C	G	32	52
BRCA	TCGA-AR-A0TX	PPEF2	SNP	Missense_Mutation	4	76811237	G	C	41	58
BRCA	TCGA-AR-A0TX	FRAS1	SNP	Silent	4	79328836	G	A	45	54
BRCA	TCGA-AR-A0TX	WDFY3	SNP	Missense_Mutation	4	85674919	C	T	29	78
BRCA	TCGA-AR-A0TX	SNCAIP	SNP	Silent	5	121785558	C	G	29	59
BRCA	TCGA-AR-A0TX	EGR1	SNP	Silent	5	137802624	G	C	45	76
BRCA	TCGA-AR-A0TX	PCDHA10	SNP	Missense_Mutation	5	140235680	C	G	31	43
BRCA	TCGA-AR-A0TX	PCDHB1	SNP	Missense_Mutation	5	140432874	C	G	32	76
BRCA	TCGA-AR-A0TX	SLC6A7	SNP	Missense_Mutation	5	149576681	C	G	32	71
BRCA	TCGA-AR-A0TX	DCTN4	SNP	Missense_Mutation	5	150135984	C	G	32	65
BRCA	TCGA-AR-A0TX	GLRA1	SNP	Silent	5	151231107	C	G	29	86
BRCA	TCGA-AR-A0TX	FGFR4	SNP	Missense_Mutation	5	176519704	G	A	37	98
BRCA	TCGA-AR-A0TX	PRELID1	SNP	Splice_site	5	176730986	G	A	37	61
BRCA	TCGA-AR-A0TX	RGS14	SNP	Missense_Mutation	5	176799049	G	C	45	41
BRCA	TCGA-AR-A0TX	PDZD2	SNP	Missense_Mutation	5	32091263	G	A	33	76
BRCA	TCGA-AR-A0TX	ANKRD31	SNP	Missense_Mutation	5	74441898	G	C	33	53
BRCA	TCGA-AR-A0TX	XRCC4	SNP	Missense_Mutation	5	82554427	G	A	37	60
BRCA	TCGA-AR-A0TX	VCAN	SNP	Missense_Mutation	5	82817735	C	G	30	56
BRCA	TCGA-AR-A0TX	ZDHHC11	SNP	Silent	5	837564	G	C	45	42
BRCA	TCGA-AR-A0TX	WASF1	SNP	Missense_Mutation	6	110434565	C	G	17	73
BRCA	TCGA-AR-A0TX	DSE	SNP	Missense_Mutation	6	116758321	C	T	32	100
BRCA	TCGA-AR-A0TX	TCF21	SNP	Missense_Mutation	6	134212887	G	A	45	100
BRCA	TCGA-AR-A0TX	FUCA2	SNP	Silent	6	143825229	G	A	41	56
BRCA	TCGA-AR-A0TX	UTRN	SNP	Silent	6	144780060	C	T	29	53
BRCA	TCGA-AR-A0TX	MTHFD1L	SNP	Missense_Mutation	6	151247385	G	C	33	85
BRCA	TCGA-AR-A0TX	CCDC170	SNP	Nonsense_Mutation	6	151907144	C	T	29	75
BRCA	TCGA-AR-A0TX	MAP3K4	SNP	Nonsense_Mutation	6	161507647	C	A	29	97
BRCA	TCGA-AR-A0TX	GPR31	SNP	Missense_Mutation	6	167570935	G	C	45	46
BRCA	TCGA-AR-A0TX	KIF13A	SNP	Silent	6	17799620	G	C	33	64
BRCA	TCGA-AR-A0TX	MRS2	SNP	Missense_Mutation	6	24416704	G	C	33	97
BRCA	TCGA-AR-A0TX	HIST1H3F	SNP	Missense_Mutation	6	26250619	A	G	14	89
BRCA	TCGA-AR-A0TX	HIST1H2BI	SNP	Silent	6	26273272	G	A	33	77
BRCA	TCGA-AR-A0TX	BTN2A1	SNP	Missense_Mutation	6	26463541	C	G	32	71
BRCA	TCGA-AR-A0TX	OR2B2	SNP	Missense_Mutation	6	27879431	G	C	47	59
BRCA	TCGA-AR-A0TX	ZNF187	SNP	Nonsense_Mutation	6	28244787	C	T	29	44
BRCA	TCGA-AR-A0TX	KIFC1	SNP	Missense_Mutation	6	33365888	G	T	41	57
BRCA	TCGA-AR-A0TX	SRPK1	SNP	Missense_Mutation	6	35858711	C	G	29	92
BRCA	TCGA-AR-A0TX	TBCC	SNP	Missense_Mutation	6	42713653	C	G	32	54
BRCA	TCGA-AR-A0TX	HMGCLL1	SNP	Missense_Mutation	6	55381378	C	T	29	64
BRCA	TCGA-AR-A0TX	RAB23	SNP	Silent	6	57061379	G	A	33	66
BRCA	TCGA-AR-A0TX	PHF3	SNP	Silent	6	64422164	C	T	29	48
BRCA	TCGA-AR-A0TX	MB21D1	SNP	Missense_Mutation	6	74135220	G	C	33	62
BRCA	TCGA-AR-A0TX	PGM3	SNP	Missense_Mutation	6	83896771	T	G	63	73
BRCA	TCGA-AR-A0TX	NT5E	SNP	Missense_Mutation	6	86176793	G	C	45	94
BRCA	TCGA-AR-A0TX	MDN1	SNP	Silent	6	90406153	C	T	32	51
BRCA	TCGA-AR-A0TX	CFTR	SNP	Missense_Mutation	7	117188830	G	C	33	72
BRCA	TCGA-AR-A0TX	ATP6V0E2	SNP	Splice_site	7	149575859	G	A	45	68
BRCA	TCGA-AR-A0TX	GIMAP1	SNP	Missense_Mutation	7	150417814	G	A	39	50
BRCA	TCGA-AR-A0TX	MLL3	SNP	Missense_Mutation	7	151945354	C	T	30	51
BRCA	TCGA-AR-A0TX	DNAH11	SNP	Missense_Mutation	7	21658797	G	A	37	46
BRCA	TCGA-AR-A0TX	OSBPL3	SNP	Silent	7	24874204	C	A	29	48
BRCA	TCGA-AR-A0TX	BMPER	SNP	Missense_Mutation	7	34125658	G	A	41	100
BRCA	TCGA-AR-A0TX	PKD1L1	SNP	Missense_Mutation	7	47840422	G	A	33	41
BRCA	TCGA-AR-A0TX	POM121L12	SNP	Missense_Mutation	7	53104112	G	A	45	47
BRCA	TCGA-AR-A0TX	PION	SNP	Missense_Mutation	7	77011930	G	C	33	54
BRCA	TCGA-AR-A0TX	SAMD9L	SNP	Missense_Mutation	7	92763064	G	A	45	97
BRCA	TCGA-AR-A0TX	ENPP2	SNP	Missense_Mutation	8	120602768	G	A	41	97
BRCA	TCGA-AR-A0TX	TSTA3	SNP	Silent	8	144696575	G	C	47	54
BRCA	TCGA-AR-A0TX	ADAM18	SNP	Missense_Mutation	8	39495172	G	T	41	68
BRCA	TCGA-AR-A0TX	MTFR1	SNP	Missense_Mutation	8	66616961	A	G	12	62
BRCA	TCGA-AR-A0TX	NCOA2	SNP	Silent	8	71068737	C	T	29	46
BRCA	TCGA-AR-A0TX	ODF2	SNP	Missense_Mutation	9	131262505	C	A	30	82
BRCA	TCGA-AR-A0TX	ZDHHC12	SNP	Silent	9	131484019	C	T	32	62
BRCA	TCGA-AR-A0TX	ADAMTSL1	SNP	Silent	9	18662042	G	A	35	54
BRCA	TCGA-AR-A0TX	VCP	SNP	Nonsense_Mutation	9	35059573	G	A	45	100
BRCA	TCGA-AR-A0TX	PAX5	SNP	Missense_Mutation	9	36923468	G	A	45	94
BRCA	TCGA-AR-A0TX	GLIS3	SNP	Missense_Mutation	9	4286347	G	A	45	73
BRCA	TCGA-AR-A0TX	CD274	SNP	Missense_Mutation	9	5466805	G	C	33	56
BRCA	TCGA-AR-A0TX	TMEM2	SNP	Missense_Mutation	9	74355044	T	C	63	59
BRCA	TCGA-AR-A0TX	PTPRD	SNP	Missense_Mutation	9	8485307	G	C	45	84
BRCA	TCGA-AR-A0TX	SPIN1	SNP	Silent	9	91090081	G	A	37	25
BRCA	TCGA-AR-A0TX	S1PR3	SNP	Missense_Mutation	9	91616385	C	G	31	35
BRCA	TCGA-AR-A0TY	FRRS1	DEL	Frame_Shift_Del	1	100195231	C	-	31	91
BRCA	TCGA-AR-A0TY	PRAMEF11	SNP	Missense_Mutation	1	12887458	C	A	32	60
BRCA	TCGA-AR-A0TY	PDE4DIP	SNP	Missense_Mutation	1	144877222	G	A	40	68
BRCA	TCGA-AR-A0TY	OR10Z1	SNP	Missense_Mutation	1	158577066	G	T	48	80
BRCA	TCGA-AR-A0TY	BLZF1	SNP	Silent	1	169347609	G	T	43	49
BRCA	TCGA-AR-A0TY	RGSL1	SNP	Missense_Mutation	1	182442910	G	A	40	32
BRCA	TCGA-AR-A0TY	NR5A2	DEL	In_Frame_Del	1	200143157	TGG	-	55	93
BRCA	TCGA-AR-A0TY	NR5A2	DEL	Frame_Shift_Del	1	200143161	CTACACAATGTGT	-	20	58
BRCA	TCGA-AR-A0TY	KIAA1804	SNP	Silent	1	233490631	C	A	31	51
BRCA	TCGA-AR-A0TY	RPAP2	SNP	Silent	1	92789086	A	G	4	43
BRCA	TCGA-AR-A0TY	WDR96	SNP	Missense_Mutation	10	105953739	A	T	11	55
BRCA	TCGA-AR-A0TY	MRC1	SNP	Missense_Mutation	10	18155569	C	A	25	68
BRCA	TCGA-AR-A0TY	GATA3	INS	Frame_Shift_Ins	10	8115952	-	CC	6	76
BRCA	TCGA-AR-A0TY	PAPSS2	SNP	Silent	10	89505676	C	A	21	57
BRCA	TCGA-AR-A0TY	MICAL2	SNP	Missense_Mutation	11	12229617	G	A	43	100
BRCA	TCGA-AR-A0TY	OR10G9	SNP	Missense_Mutation	11	123894140	G	A	46	51
BRCA	TCGA-AR-A0TY	MUC5B	DEL	Frame_Shift_Del	11	1257711	C	-	30	80
BRCA	TCGA-AR-A0TY	NELL1	SNP	Silent	11	21250897	C	T	27	39
BRCA	TCGA-AR-A0TY	ATG16L2	SNP	Missense_Mutation	11	72535862	T	C	56	57
BRCA	TCGA-AR-A0TY	LRRC10	DEL	Frame_Shift_Del	12	70004164	C	-	26	100
BRCA	TCGA-AR-A0TY	EEA1	SNP	Nonsense_Mutation	12	93170706	G	A	48	97
BRCA	TCGA-AR-A0TY	FAM70B	SNP	Missense_Mutation	13	114498127	G	T	42	93
BRCA	TCGA-AR-A0TY	NYNRIN	SNP	Missense_Mutation	14	24885799	C	T	31	64
BRCA	TCGA-AR-A0TY	CRABP1	SNP	Splice_site	15	78633562	G	C	35	70
BRCA	TCGA-AR-A0TY	HEATR3	SNP	Missense_Mutation	16	50136311	G	C	46	58
BRCA	TCGA-AR-A0TY	TAF1C	SNP	Missense_Mutation	16	84217059	C	T	23	40
BRCA	TCGA-AR-A0TY	FSCN2	DNP	Missense_Mutation	17	79496124	TG	CC	59	45
BRCA	TCGA-AR-A0TY	LAMA3	DEL	Frame_Shift_Del	18	21426463	C	-	19	54
BRCA	TCGA-AR-A0TY	GCDH	SNP	Missense_Mutation	19	13002750	G	C	33	64
BRCA	TCGA-AR-A0TY	ZNF556	SNP	Missense_Mutation	19	2878290	G	A	33	63
BRCA	TCGA-AR-A0TY	LRG1	INS	Frame_Shift_Ins	19	4538291	-	T	28	53
BRCA	TCGA-AR-A0TY	EN1	SNP	Missense_Mutation	2	119600568	C	A	24	62
BRCA	TCGA-AR-A0TY	CCDC108	SNP	Silent	2	219895498	G	A	39	4
BRCA	TCGA-AR-A0TY	ALMS1	SNP	Missense_Mutation	2	73677994	A	G	8	49
BRCA	TCGA-AR-A0TY	CSRP2BP	INS	Frame_Shift_Ins	20	18163939	-	T	26	100
BRCA	TCGA-AR-A0TY	CSRP2BP	DEL	Splice_Site	20	18163944	TA	-	57	93
BRCA	TCGA-AR-A0TY	NINL	SNP	Missense_Mutation	20	25485550	C	A	19	59
BRCA	TCGA-AR-A0TY	BPIFB4	SNP	Missense_Mutation	20	31671497	C	T	27	67
BRCA	TCGA-AR-A0TY	CTNNBL1	SNP	Silent	20	36407705	C	T	27	36
BRCA	TCGA-AR-A0TY	ADARB1	SNP	Missense_Mutation	21	46604943	C	T	19	97
BRCA	TCGA-AR-A0TY	TRMT2A	DEL	Frame_Shift_Del	22	20103700	T	-	54	88
BRCA	TCGA-AR-A0TY	EIF2S3	SNP	Missense_Mutation	23	24082440	C	A	26	95
BRCA	TCGA-AR-A0TY	MAGIX	SNP	Silent	23	49021387	C	T	28	48
BRCA	TCGA-AR-A0TY	PVRL3	SNP	Missense_Mutation	3	110845147	G	T	44	87
BRCA	TCGA-AR-A0TY	CPNE4	SNP	Nonsense_Mutation	3	131388574	G	T	45	80
BRCA	TCGA-AR-A0TY	WNT7A	SNP	Silent	3	13896104	G	A	33	55
BRCA	TCGA-AR-A0TY	CLDN11	SNP	Missense_Mutation	3	170136900	G	A	40	59
BRCA	TCGA-AR-A0TY	FLNB	SNP	Missense_Mutation	3	58124245	T	G	56	94
BRCA	TCGA-AR-A0TY	DDIT4L	SNP	Missense_Mutation	4	101109088	C	T	19	79
BRCA	TCGA-AR-A0TY	PCDHA11	SNP	Missense_Mutation	5	140250369	G	A	38	55
BRCA	TCGA-AR-A0TY	FGF18	SNP	Missense_Mutation	5	170847438	C	A	30	60
BRCA	TCGA-AR-A0TY	FGF10	SNP	Missense_Mutation	5	44388528	G	A	44	68
BRCA	TCGA-AR-A0TY	SEMA5A	SNP	Missense_Mutation	5	9202176	G	T	37	73
BRCA	TCGA-AR-A0TY	GPR110	SNP	Missense_Mutation	6	46976980	C	A	32	67
BRCA	TCGA-AR-A0TY	PKHD1	INS	Frame_Shift_Ins	6	51484109	-	C	7	61
BRCA	TCGA-AR-A0TY	MUC17	SNP	Missense_Mutation	7	100696407	G	A	38	43
BRCA	TCGA-AR-A0TY	RELN	SNP	Nonsense_Mutation	7	103191642	G	T	34	67
BRCA	TCGA-AR-A0TY	SPDYE1	SNP	Missense_Mutation	7	44047341	G	A	42	51
BRCA	TCGA-AR-A0TY	DLX6	SNP	Missense_Mutation	7	96635577	C	A	19	66
BRCA	TCGA-AR-A0TY	SULF1	SNP	Missense_Mutation	8	70550743	C	A	32	74
BRCA	TCGA-AR-A0TY	NAIF1	SNP	Silent	9	130825869	G	T	47	72
BRCA	TCGA-AR-A0TY	USP20	DEL	Frame_Shift_Del	9	132623252	CC	-	30	83
BRCA	TCGA-AR-A0TZ	PCNXL2	SNP	Silent	1	233121877	C	T	29	53
BRCA	TCGA-AR-A0TZ	ZP4	SNP	Silent	1	238049138	G	A	45	38
BRCA	TCGA-AR-A0TZ	SLC1A7	SNP	Missense_Mutation	1	53608037	C	T	19	59
BRCA	TCGA-AR-A0TZ	SRSF11	SNP	Missense_Mutation	1	70700442	G	C	47	81
BRCA	TCGA-AR-A0TZ	ZMYND11	SNP	Missense_Mutation	10	294305	T	G	60	67
BRCA	TCGA-AR-A0TZ	ZMYND11	SNP	Missense_Mutation	10	294311	C	A	26	80
BRCA	TCGA-AR-A0TZ	ZEB1	SNP	Missense_Mutation	10	31815672	G	A	37	100
BRCA	TCGA-AR-A0TZ	CTR9	SNP	Missense_Mutation	11	10777333	G	A	34	100
BRCA	TCGA-AR-A0TZ	JAM3	SNP	Silent	11	133939011	C	G	32	57
BRCA	TCGA-AR-A0TZ	DCDC5	SNP	Missense_Mutation	11	30928204	C	T	29	56
BRCA	TCGA-AR-A0TZ	LGALS12	SNP	Missense_Mutation	11	63277343	G	C	33	45
BRCA	TCGA-AR-A0TZ	EHD1	SNP	Missense_Mutation	11	64622955	G	A	45	93
BRCA	TCGA-AR-A0TZ	CPT1A	SNP	Missense_Mutation	11	68552302	C	A	28	85
BRCA	TCGA-AR-A0TZ	SHANK2	SNP	Silent	11	70653135	G	T	41	58
BRCA	TCGA-AR-A0TZ	SHANK2	SNP	Silent	11	70653231	G	A	37	47
BRCA	TCGA-AR-A0TZ	SHANK2	SNP	Silent	11	70653240	G	C	33	49
BRCA	TCGA-AR-A0TZ	CIT	SNP	Missense_Mutation	12	120156653	C	T	31	93
BRCA	TCGA-AR-A0TZ	ZNF268	DEL	In_Frame_Del	12	133780972	CTT	-	24	43
BRCA	TCGA-AR-A0TZ	SIPA1L1	SNP	Missense_Mutation	14	72125116	C	G	32	100
BRCA	TCGA-AR-A0TZ	FCF1	SNP	Splice_site	14	75200780	A	G	8	91
BRCA	TCGA-AR-A0TZ	STON2	SNP	Missense_Mutation	14	81744003	T	A	50	61
BRCA	TCGA-AR-A0TZ	SNURF	SNP	Missense_Mutation	15	25200202	C	T	27	64
BRCA	TCGA-AR-A0TZ	NOX5	SNP	Silent	15	69328195	G	A	37	48
BRCA	TCGA-AR-A0TZ	STRA6	SNP	Silent	15	74489717	G	C	33	49
BRCA	TCGA-AR-A0TZ		SNP	Missense_Mutation	16	28354350	C	T	29	51
BRCA	TCGA-AR-A0TZ	PRR14	SNP	Missense_Mutation	16	30667601	C	T	17	54
BRCA	TCGA-AR-A0TZ	NAT15	SNP	Missense_Mutation	16	3533483	G	A	33	96
BRCA	TCGA-AR-A0TZ	PIGW	SNP	Missense_Mutation	17	34893216	T	G	64	69
BRCA	TCGA-AR-A0TZ	LPO	SNP	Missense_Mutation	17	56329723	C	T	23	59
BRCA	TCGA-AR-A0TZ	FBF1	SNP	Missense_Mutation	17	73919517	G	A	41	49
BRCA	TCGA-AR-A0TZ	MBD5	SNP	Missense_Mutation	2	149227152	G	T	41	81
BRCA	TCGA-AR-A0TZ	CSRNP3	SNP	Missense_Mutation	2	166536142	C	T	25	76
BRCA	TCGA-AR-A0TZ	DYNC1I2	SNP	Missense_Mutation	2	172563065	G	A	45	71
BRCA	TCGA-AR-A0TZ	UNC80	SNP	Silent	2	210858856	G	A	38	38
BRCA	TCGA-AR-A0TZ	PCSK2	SNP	Nonsense_Mutation	20	17208116	G	T	47	80
BRCA	TCGA-AR-A0TZ	CST2	SNP	Nonsense_Mutation	20	23807084	G	A	40	49
BRCA	TCGA-AR-A0TZ	ATP1B4	SNP	Missense_Mutation	23	119510247	C	T	31	71
BRCA	TCGA-AR-A0TZ	MAGEA8	SNP	Silent	23	149013838	G	A	38	56
BRCA	TCGA-AR-A0TZ	HCFC1	SNP	Missense_Mutation	23	153236135	C	T	31	90
BRCA	TCGA-AR-A0TZ		SNP	Missense_Mutation	23	51150887	C	T	19	39
BRCA	TCGA-AR-A0TZ	B4GALT4	SNP	Silent	3	118937505	G	C	45	57
BRCA	TCGA-AR-A0TZ	CEP70	SNP	Missense_Mutation	3	138218960	G	C	44	48
BRCA	TCGA-AR-A0TZ	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AR-A0TZ	ZNF167	SNP	Missense_Mutation	3	44612650	G	T	33	80
BRCA	TCGA-AR-A0TZ	BSN	SNP	Missense_Mutation	3	49698885	C	T	23	66
BRCA	TCGA-AR-A0TZ	NPY1R	SNP	Missense_Mutation	4	164247281	T	C	61	42
BRCA	TCGA-AR-A0TZ	LIAS	SNP	Splice_Site	4	39474832	G	T	44	96
BRCA	TCGA-AR-A0TZ	SCFD2	SNP	Missense_Mutation	4	54218895	T	A	50	77
BRCA	TCGA-AR-A0TZ	DSPP	SNP	Missense_Mutation	4	88537101	G	A	34	66
BRCA	TCGA-AR-A0TZ	DSPP	SNP	Missense_Mutation	4	88537227	G	A	34	53
BRCA	TCGA-AR-A0TZ	AFF4	SNP	Missense_Mutation	5	132269985	G	A	38	70
BRCA	TCGA-AR-A0TZ	CLINT1	SNP	Missense_Mutation	5	157244502	G	A	40	100
BRCA	TCGA-AR-A0TZ	EMB	SNP	Missense_Mutation	5	49695120	G	C	33	62
BRCA	TCGA-AR-A0TZ	MED23	SNP	Missense_Mutation	6	131937087	G	C	41	100
BRCA	TCGA-AR-A0TZ	HIST1H2AG	SNP	Silent	6	27100982	C	T	31	29
BRCA	TCGA-AR-A0TZ	TFAP2B	SNP	Missense_Mutation	6	50803801	C	T	32	96
BRCA	TCGA-AR-A0TZ	RELN	SNP	Silent	7	103162496	C	T	19	52
BRCA	TCGA-AR-A0TZ	HIPK2	SNP	Missense_Mutation	7	139311489	C	T	32	100
BRCA	TCGA-AR-A0TZ	MLL3	SNP	Missense_Mutation	7	151845516	T	C	64	92
BRCA	TCGA-AR-A0TZ	HGF	SNP	Missense_Mutation	7	81386610	C	G	32	88
BRCA	TCGA-AR-A0TZ	ZNF804B	SNP	Missense_Mutation	7	88965621	C	T	29	51
BRCA	TCGA-AR-A0TZ	OC90	SNP	Nonsense_Mutation	8	133045292	C	A	29	48
BRCA	TCGA-AR-A0TZ	TRAPPC9	SNP	Nonsense_Mutation	8	141262906	G	A	47	94
BRCA	TCGA-AR-A0TZ	STC1	SNP	Splice_Site	8	23709754	C	T	18	95
BRCA	TCGA-AR-A0TZ	SDR16C5	SNP	Missense_Mutation	8	57218238	C	T	29	52
BRCA	TCGA-AR-A0TZ	TMEM8B	SNP	Missense_Mutation	9	35846559	G	C	34	55
BRCA	TCGA-AR-A0TZ	ZNF658	SNP	Missense_Mutation	9	40773494	C	A	32	57
BRCA	TCGA-AR-A0TZ	KIAA2026	SNP	Missense_Mutation	9	5988373	C	G	32	89
BRCA	TCGA-AR-A0U0	SELL	SNP	Nonsense_Mutation	1	169679648	C	T	21	74
BRCA	TCGA-AR-A0U0	PAPPA2	SNP	Silent	1	176563934	C	T	24	50
BRCA	TCGA-AR-A0U0	PADI4	SNP	Missense_Mutation	1	17682605	C	A	26	96
BRCA	TCGA-AR-A0U0	OR2AK2	SNP	Missense_Mutation	1	248128766	G	A	40	49
BRCA	TCGA-AR-A0U0	PKD2L1	SNP	Nonsense_Mutation	10	102049824	G	C	45	55
BRCA	TCGA-AR-A0U0	COL17A1	SNP	Missense_Mutation	10	105792444	T	G	64	87
BRCA	TCGA-AR-A0U0	FDXACB1	SNP	Missense_Mutation	11	111745970	A	T	4	49
BRCA	TCGA-AR-A0U0	ARID2	INS	Frame_Shift_Ins	12	46245859	-	G	7	60
BRCA	TCGA-AR-A0U0	C1QTNF9B	SNP	Silent	13	24466087	G	T	39	54
BRCA	TCGA-AR-A0U0	ATP12A	SNP	Missense_Mutation	13	25264568	G	T	33	60
BRCA	TCGA-AR-A0U0	BCL11B	SNP	Silent	14	99640737	C	T	23	53
BRCA	TCGA-AR-A0U0	SPTBN5	SNP	Silent	15	42160297	G	A	42	48
BRCA	TCGA-AR-A0U0	C16orf62	SNP	Missense_Mutation	16	19656250	G	C	45	57
BRCA	TCGA-AR-A0U0	VWA3A	DEL	Frame_Shift_Del	16	22126692	A	-	13	44
BRCA	TCGA-AR-A0U0	ZNF200	SNP	Missense_Mutation	16	3274374	C	G	32	62
BRCA	TCGA-AR-A0U0	PHLPP2	SNP	Missense_Mutation	16	71686790	C	T	31	99
BRCA	TCGA-AR-A0U0	WNT9B	SNP	Missense_Mutation	17	44953699	C	G	23	74
BRCA	TCGA-AR-A0U0	TP53	SNP	Missense_Mutation	17	7578268	A	C	3	88
BRCA	TCGA-AR-A0U0	EMILIN2	SNP	Silent	18	2891304	G	A	35	50
BRCA	TCGA-AR-A0U0	C18orf34	SNP	Missense_Mutation	18	30803162	G	C	45	62
BRCA	TCGA-AR-A0U0	SERPINB12	SNP	Missense_Mutation	18	61225594	T	A	56	72
BRCA	TCGA-AR-A0U0	ZNF28	SNP	Silent	19	53304396	C	T	32	49
BRCA	TCGA-AR-A0U0	LONRF2	SNP	Missense_Mutation	2	100910844	G	T	44	68
BRCA	TCGA-AR-A0U0	TTN	SNP	Silent	2	179593823	G	A	39	26
BRCA	TCGA-AR-A0U0	TTN	SNP	Missense_Mutation	2	179650411	C	T	27	71
BRCA	TCGA-AR-A0U0	DOCK10	SNP	Silent	2	225702539	G	C	39	37
BRCA	TCGA-AR-A0U0	RHBDD1	SNP	Silent	2	227731981	G	T	37	50
BRCA	TCGA-AR-A0U0	TGM6	SNP	Missense_Mutation	20	2377157	G	A	37	61
BRCA	TCGA-AR-A0U0	KCNK15	SNP	Missense_Mutation	20	43379220	G	A	38	98
BRCA	TCGA-AR-A0U0	FXR1	SNP	Missense_Mutation	3	180669241	C	A	29	55
BRCA	TCGA-AR-A0U0	C3orf70	SNP	Missense_Mutation	3	184801097	C	T	26	56
BRCA	TCGA-AR-A0U0	EHHADH	SNP	Missense_Mutation	3	184910162	A	G	2	91
BRCA	TCGA-AR-A0U0	GALNTL6	SNP	Splice_Site	4	172735562	G	A	33	70
BRCA	TCGA-AR-A0U0	GABRA4	SNP	Nonsense_Mutation	4	46981098	T	A	62	76
BRCA	TCGA-AR-A0U0	PRDM6	SNP	Missense_Mutation	5	122491674	G	A	39	96
BRCA	TCGA-AR-A0U0	FNIP1	SNP	Missense_Mutation	5	131014737	T	C	52	89
BRCA	TCGA-AR-A0U0	PIK3R1	DEL	In_Frame_Del	5	67591104	TTAAACCAGACC	-	52	90
BRCA	TCGA-AR-A0U0	MYCT1	SNP	Missense_Mutation	6	153043015	C	A	32	73
BRCA	TCGA-AR-A0U0	DNAH8	SNP	Missense_Mutation	6	38834385	C	T	27	88
BRCA	TCGA-AR-A0U0	ICK	SNP	Missense_Mutation	6	52878680	G	A	46	55
BRCA	TCGA-AR-A0U0	MLL3	SNP	Missense_Mutation	7	151927054	C	T	17	98
BRCA	TCGA-AR-A0U0	AKAP9	SNP	Missense_Mutation	7	91641812	C	G	29	91
BRCA	TCGA-AR-A0U0	PABPC1	SNP	Silent	8	101716544	G	A	39	48
BRCA	TCGA-AR-A0U0	OR13C4	SNP	Missense_Mutation	9	107288781	G	T	46	77
BRCA	TCGA-AR-A0U0	OR13C8	SNP	Missense_Mutation	9	107331457	G	C	41	47
BRCA	TCGA-AR-A0U1	PSMA5	SNP	Missense_Mutation	1	109952632	A	C	8	91
BRCA	TCGA-AR-A0U1	KIAA0907	SNP	Missense_Mutation	1	155903461	T	C	64	89
BRCA	TCGA-AR-A0U1	PEAR1	SNP	Missense_Mutation	1	156883814	T	A	55	55
BRCA	TCGA-AR-A0U1	UAP1	SNP	Missense_Mutation	1	162557384	C	G	19	50
BRCA	TCGA-AR-A0U1	NECAP2	SNP	Missense_Mutation	1	16770220	G	T	41	58
BRCA	TCGA-AR-A0U1	SLC45A3	SNP	Missense_Mutation	1	205628387	C	G	28	58
BRCA	TCGA-AR-A0U1	PTPN14	SNP	Missense_Mutation	1	214557148	G	C	47	72
BRCA	TCGA-AR-A0U1	SIPA1L2	SNP	Missense_Mutation	1	232650538	T	C	60	91
BRCA	TCGA-AR-A0U1	EIF3I	SNP	Missense_Mutation	1	32694340	A	G	6	65
BRCA	TCGA-AR-A0U1	HIVEP3	SNP	Missense_Mutation	1	41976178	C	T	21	56
BRCA	TCGA-AR-A0U1	ACTR1A	SNP	Missense_Mutation	10	104247996	C	T	30	100
BRCA	TCGA-AR-A0U1	PLEKHS1	SNP	Missense_Mutation	10	115540387	C	G	30	56
BRCA	TCGA-AR-A0U1	ITGA8	SNP	Splice_Site	10	15573048	C	A	20	85
BRCA	TCGA-AR-A0U1	ZNF37A	SNP	Silent	10	38407207	A	G	6	47
BRCA	TCGA-AR-A0U1	MUC5B	SNP	Silent	11	1264014	G	C	45	49
BRCA	TCGA-AR-A0U1	IGSF9B	SNP	Splice_site	11	133807856	G	T	42	100
BRCA	TCGA-AR-A0U1	TRIM49B	SNP	Missense_Mutation	11	49053370	G	A	47	58
BRCA	TCGA-AR-A0U1	OR4A5	SNP	Missense_Mutation	11	51411671	G	C	44	47
BRCA	TCGA-AR-A0U1	OR5L2	SNP	Missense_Mutation	11	55594925	T	G	63	49
BRCA	TCGA-AR-A0U1	RTN4RL2	SNP	Silent	11	57235332	C	T	32	81
BRCA	TCGA-AR-A0U1	PDE2A	SNP	Missense_Mutation	11	72300269	C	G	22	78
BRCA	TCGA-AR-A0U1	AACS	SNP	Missense_Mutation	12	125576043	T	A	54	59
BRCA	TCGA-AR-A0U1	RIMBP2	SNP	Missense_Mutation	12	130927134	G	A	38	80
BRCA	TCGA-AR-A0U1	CARS2	DEL	In_Frame_Del	13	111319757	ATG	-	8	45
BRCA	TCGA-AR-A0U1	SPG20	SNP	Missense_Mutation	13	36886528	A	G	12	64
BRCA	TCGA-AR-A0U1	OXGR1	SNP	Missense_Mutation	13	97639673	T	C	51	92
BRCA	TCGA-AR-A0U1	PEAK1	SNP	Silent	15	77406585	G	A	42	64
BRCA	TCGA-AR-A0U1	ENSG00000236421	SNP	Missense_Mutation	16	15082151	G	A	42	76
BRCA	TCGA-AR-A0U1	SYT17	SNP	Nonsense_Mutation	16	19278387	G	T	41	88
BRCA	TCGA-AR-A0U1	ARHGAP17	SNP	Missense_Mutation	16	24979688	C	G	30	93
BRCA	TCGA-AR-A0U1	ITGAX	SNP	Silent	16	31373963	G	T	43	54
BRCA	TCGA-AR-A0U1	ITGAD	SNP	Splice_Site	16	31425771	G	C	35	74
BRCA	TCGA-AR-A0U1	PHKB	SNP	Missense_Mutation	16	47531346	C	T	21	55
BRCA	TCGA-AR-A0U1	TMUB2	SNP	Missense_Mutation	17	42265092	C	G	32	72
BRCA	TCGA-AR-A0U1	NUP88	SNP	Missense_Mutation	17	5289552	C	G	29	79
BRCA	TCGA-AR-A0U1	TP53	SNP	Missense_Mutation	17	7578190	T	C	49	88
BRCA	TCGA-AR-A0U1	USP36	SNP	Silent	17	76803593	C	T	23	48
BRCA	TCGA-AR-A0U1	ANKRD30B	SNP	Missense_Mutation	18	14803817	T	G	52	35
BRCA	TCGA-AR-A0U1	DHPS	SNP	Missense_Mutation	19	12788192	T	G	53	76
BRCA	TCGA-AR-A0U1	ARHGEF1	SNP	Splice_Site	19	42410774	T	C	59	79
BRCA	TCGA-AR-A0U1	LILRA5	SNP	Missense_Mutation	19	54822884	A	G	9	51
BRCA	TCGA-AR-A0U1	CYP27C1	SNP	Splice_Site	2	127952909	A	G	14	87
BRCA	TCGA-AR-A0U1	GALNT5	SNP	Missense_Mutation	2	158152231	C	A	18	100
BRCA	TCGA-AR-A0U1	LRP2	SNP	Missense_Mutation	2	170011097	C	G	25	52
BRCA	TCGA-AR-A0U1	LRP2	SNP	Missense_Mutation	2	170063488	C	T	19	50
BRCA	TCGA-AR-A0U1	BMPR2	SNP	Nonsense_Mutation	2	203242213	C	T	25	79
BRCA	TCGA-AR-A0U1	SPEG	SNP	Missense_Mutation	2	220333886	T	A	55	90
BRCA	TCGA-AR-A0U1	ARMC9	SNP	Silent	2	232156119	C	T	30	54
BRCA	TCGA-AR-A0U1	ZSWIM3	SNP	Missense_Mutation	20	44506036	A	G	3	53
BRCA	TCGA-AR-A0U1	PTGIS	SNP	Missense_Mutation	20	48124493	T	A	60	46
BRCA	TCGA-AR-A0U1	DDX26B	SNP	Missense_Mutation	23	134713802	G	C	33	62
BRCA	TCGA-AR-A0U1	CEP63	SNP	Missense_Mutation	3	134268924	A	G	7	71
BRCA	TCGA-AR-A0U1	PRR23B	SNP	Missense_Mutation	3	138738845	C	T	27	45
BRCA	TCGA-AR-A0U1	PLS1	SNP	Silent	3	142403210	C	T	21	59
BRCA	TCGA-AR-A0U1	AP2M1	DEL	Frame_Shift_Del	3	183899476	GCTTGCAGCGGGAA	-	46	53
BRCA	TCGA-AR-A0U1	EPHA6	SNP	Missense_Mutation	3	97356897	G	T	33	100
BRCA	TCGA-AR-A0U1	ARL6	SNP	Missense_Mutation	3	97506865	C	A	32	72
BRCA	TCGA-AR-A0U1	METTL14	SNP	Missense_Mutation	4	119609080	G	C	47	74
BRCA	TCGA-AR-A0U1	CPZ	SNP	Missense_Mutation	4	8620195	G	A	39	99
BRCA	TCGA-AR-A0U1	C5orf65	SNP	Missense_Mutation	5	138729667	C	G	32	50
BRCA	TCGA-AR-A0U1	PARP8	SNP	Nonsense_Mutation	5	50055554	A	T	15	59
BRCA	TCGA-AR-A0U1	NEDD9	SNP	Missense_Mutation	6	11190312	T	A	55	64
BRCA	TCGA-AR-A0U1	BTN3A1	SNP	Silent	6	26412970	A	G	4	49
BRCA	TCGA-AR-A0U1	LAMB4	SNP	Missense_Mutation	7	107746436	C	G	28	49
BRCA	TCGA-AR-A0U1	RSPO2	SNP	Missense_Mutation	8	109001415	C	A	22	95
BRCA	TCGA-AR-A0U1	CSPP1	SNP	Missense_Mutation	8	68024243	A	G	11	65
BRCA	TCGA-AR-A0U1	NECAB1	SNP	Missense_Mutation	8	91937819	G	T	34	57
BRCA	TCGA-AR-A0U1	ZNF169	SNP	Missense_Mutation	9	97063282	C	A	17	53
BRCA	TCGA-AR-A0U2	PRMT6	SNP	Missense_Mutation	1	107600277	C	T	22	65
BRCA	TCGA-AR-A0U2	ZNF687	SNP	Missense_Mutation	1	151261890	C	A	29	66
BRCA	TCGA-AR-A0U2	PI4KB	SNP	Missense_Mutation	1	151265399	C	T	30	97
BRCA	TCGA-AR-A0U2	USH2A	SNP	Missense_Mutation	1	215844346	C	T	31	53
BRCA	TCGA-AR-A0U2	ZNF678	SNP	Splice_site	1	227751396	A	T	12	53
BRCA	TCGA-AR-A0U2	OR2AK2	SNP	Missense_Mutation	1	248128766	G	A	40	49
BRCA	TCGA-AR-A0U2	PFKP	SNP	Silent	10	3159021	C	T	21	51
BRCA	TCGA-AR-A0U2	CSTF2T	SNP	Missense_Mutation	10	53458363	C	T	27	66
BRCA	TCGA-AR-A0U2	GATA3	SNP	Missense_Mutation	10	8115746	A	T	9	58
BRCA	TCGA-AR-A0U2	GATA3	INS	Frame_Shift_Ins	10	8115874	-	G	31	85
BRCA	TCGA-AR-A0U2	OLFML1	SNP	Silent	11	7530894	T	C	49	52
BRCA	TCGA-AR-A0U2	FAT3	SNP	Missense_Mutation	11	92087880	T	A	61	91
BRCA	TCGA-AR-A0U2	KDM5A	SNP	Silent	12	465641	C	T	26	47
BRCA	TCGA-AR-A0U2	CD163L1	SNP	Missense_Mutation	12	7556322	A	C	2	66
BRCA	TCGA-AR-A0U2	TPTE2	SNP	Silent	13	20048197	C	G	21	52
BRCA	TCGA-AR-A0U2	PPP2R5C	SNP	Splice_Site	14	102384167	G	A	36	95
BRCA	TCGA-AR-A0U2	FOXN3	SNP	Missense_Mutation	14	89629077	C	T	23	57
BRCA	TCGA-AR-A0U2	GABRA5	SNP	Missense_Mutation	15	27114436	A	T	2	53
BRCA	TCGA-AR-A0U2	FSD2	DEL	In_Frame_Del	15	83451757	TTC	-	60	55
BRCA	TCGA-AR-A0U2	MMP2	SNP	Missense_Mutation	16	55519539	G	A	38	97
BRCA	TCGA-AR-A0U2	WDR24	SNP	Missense_Mutation	16	737628	C	T	23	94
BRCA	TCGA-AR-A0U2	CNTNAP4	SNP	Missense_Mutation	16	76501400	C	G	20	56
BRCA	TCGA-AR-A0U2	TP53	SNP	Missense_Mutation	17	7578403	C	A	25	84
BRCA	TCGA-AR-A0U2	ZNF823	SNP	Missense_Mutation	19	11834071	G	T	35	49
BRCA	TCGA-AR-A0U2	AXL	SNP	Missense_Mutation	19	41743883	C	T	27	51
BRCA	TCGA-AR-A0U2	ZNF233	SNP	Missense_Mutation	19	44770438	G	A	33	52
BRCA	TCGA-AR-A0U2	FAM71E2	SNP	Silent	19	55871057	C	G	26	45
BRCA	TCGA-AR-A0U2	NLRP4	SNP	Missense_Mutation	19	56369409	C	T	17	47
BRCA	TCGA-AR-A0U2	THSD7B	SNP	Missense_Mutation	2	138169282	C	A	20	51
BRCA	TCGA-AR-A0U2	WDR75	SNP	Missense_Mutation	2	190332305	T	C	49	68
BRCA	TCGA-AR-A0U2	CAMKMT	SNP	Missense_Mutation	2	44993576	C	T	27	97
BRCA	TCGA-AR-A0U2	SSTR4	SNP	Silent	20	23016492	C	T	27	51
BRCA	TCGA-AR-A0U2	AURKA	SNP	Missense_Mutation	20	54961390	G	A	46	64
BRCA	TCGA-AR-A0U2	NCAM2	SNP	Silent	21	22910263	C	T	19	48
BRCA	TCGA-AR-A0U2	SEC14L4	SNP	Missense_Mutation	22	30891919	C	T	31	89
BRCA	TCGA-AR-A0U2	IL13RA2	SNP	Silent	23	114242577	G	A	34	70
BRCA	TCGA-AR-A0U2	SENP7	SNP	Missense_Mutation	3	101136588	G	C	40	69
BRCA	TCGA-AR-A0U2	PLXNA1	SNP	Missense_Mutation	3	126739137	C	T	27	60
BRCA	TCGA-AR-A0U2	TBL1XR1	SNP	Missense_Mutation	3	176769373	C	A	28	93
BRCA	TCGA-AR-A0U2	GPR125	SNP	Missense_Mutation	4	22438157	C	T	27	99
BRCA	TCGA-AR-A0U2	HTN3	SNP	Silent	4	70898889	G	A	34	42
BRCA	TCGA-AR-A0U2	GRXCR2	SNP	Missense_Mutation	5	145252330	C	T	21	76
BRCA	TCGA-AR-A0U2	DOPEY1	SNP	Nonsense_Mutation	6	83872606	C	T	19	83
BRCA	TCGA-AR-A0U2	PPP1R3A	SNP	Silent	7	113520082	C	A	18	48
BRCA	TCGA-AR-A0U2	IMPDH1	SNP	Missense_Mutation	7	128041163	G	T	44	94
BRCA	TCGA-AR-A0U2	KIAA1549	SNP	Missense_Mutation	7	138602615	G	A	39	51
BRCA	TCGA-AR-A0U2	HIPK2	SNP	Missense_Mutation	7	139297952	G	C	42	98
BRCA	TCGA-AR-A0U2	OSBPL3	SNP	Missense_Mutation	7	24902870	G	T	48	51
BRCA	TCGA-AR-A0U2	AEBP1	SNP	Missense_Mutation	7	44151594	G	A	38	99
BRCA	TCGA-AR-A0U2	SLC7A13	SNP	Missense_Mutation	8	87242353	C	T	19	43
BRCA	TCGA-AR-A0U2	ZFP37	SNP	Missense_Mutation	9	115806423	T	C	62	51
BRCA	TCGA-AR-A0U2	C5	SNP	Silent	9	123778623	C	T	22	49
BRCA	TCGA-AR-A0U3	BCL9	SNP	Missense_Mutation	1	147095879	C	T	19	74
BRCA	TCGA-AR-A0U3	CELA2B	SNP	Silent	1	15802980	G	A	38	52
BRCA	TCGA-AR-A0U3	RGS5	SNP	Missense_Mutation	1	163117185	C	T	30	95
BRCA	TCGA-AR-A0U3	CALML6	SNP	Silent	1	1848267	C	T	27	46
BRCA	TCGA-AR-A0U3	PLD5	SNP	Silent	1	242253180	G	A	38	38
BRCA	TCGA-AR-A0U3	KLF17	SNP	Missense_Mutation	1	44595388	G	A	47	57
BRCA	TCGA-AR-A0U3	KIF2C	SNP	Missense_Mutation	1	45213334	G	A	39	64
BRCA	TCGA-AR-A0U3	ABCC2	SNP	Missense_Mutation	10	101595869	C	T	23	70
BRCA	TCGA-AR-A0U3	TMEM9B	SNP	Missense_Mutation	11	8969901	T	A	56	79
BRCA	TCGA-AR-A0U3	UHRF1BP1L	SNP	Silent	12	100482727	T	C	57	53
BRCA	TCGA-AR-A0U3	RFX4	SNP	Missense_Mutation	12	107078653	C	T	31	56
BRCA	TCGA-AR-A0U3	DAO	SNP	Nonsense_Mutation	12	109288102	C	T	19	66
BRCA	TCGA-AR-A0U3	WSB2	SNP	Missense_Mutation	12	118472017	G	T	48	98
BRCA	TCGA-AR-A0U3	MLEC	SNP	Missense_Mutation	12	121125241	G	A	40	82
BRCA	TCGA-AR-A0U3	WASF3	SNP	Missense_Mutation	13	27259977	G	A	37	98
BRCA	TCGA-AR-A0U3	SLC7A1	SNP	Splice_site	13	30088615	C	T	27	30
BRCA	TCGA-AR-A0U3	NPAP1	DEL	Frame_Shift_Del	15	24923646	C	-	17	51
BRCA	TCGA-AR-A0U3	MAPKBP1	SNP	Missense_Mutation	15	42104263	G	A	38	63
BRCA	TCGA-AR-A0U3	UNC45A	SNP	Missense_Mutation	15	91496180	G	T	35	60
BRCA	TCGA-AR-A0U3	SLX4	SNP	Missense_Mutation	16	3640194	C	A	32	52
BRCA	TCGA-AR-A0U3	ADCY9	SNP	Missense_Mutation	16	4042255	C	A	30	80
BRCA	TCGA-AR-A0U3	HDAC5	SNP	Missense_Mutation	17	42171145	C	T	30	86
BRCA	TCGA-AR-A0U3	C17orf104	SNP	Nonsense_Mutation	17	42745436	C	G	18	50
BRCA	TCGA-AR-A0U3	NMT1	SNP	Nonsense_Mutation	17	43183002	C	T	17	88
BRCA	TCGA-AR-A0U3	VPS53	SNP	Missense_Mutation	17	489514	C	A	32	97
BRCA	TCGA-AR-A0U3	TP53	DEL	Frame_Shift_Del	17	7578429	C	-	28	50
BRCA	TCGA-AR-A0U3	SMCHD1	SNP	Silent	18	2743899	C	T	30	47
BRCA	TCGA-AR-A0U3	RFXANK	SNP	Nonsense_Mutation	19	19304795	C	T	21	61
BRCA	TCGA-AR-A0U3	LOC284441	SNP	Silent	19	20369546	A	C	7	46
BRCA	TCGA-AR-A0U3	ALKBH7	SNP	Missense_Mutation	19	6374526	G	A	46	92
BRCA	TCGA-AR-A0U3	RGPD3	DEL	Frame_Shift_Del	2	107040513	TAGA	-	61	78
BRCA	TCGA-AR-A0U3	PVRL3	SNP	Missense_Mutation	3	110837787	T	G	52	53
BRCA	TCGA-AR-A0U3	FEZF2	SNP	Silent	3	62356989	C	A	19	50
BRCA	TCGA-AR-A0U3	PABPC4L	SNP	Missense_Mutation	4	135121651	C	T	31	92
BRCA	TCGA-AR-A0U3	PABPC4L	SNP	Nonsense_Mutation	4	135122010	G	C	40	50
BRCA	TCGA-AR-A0U3	DNAH5	SNP	Missense_Mutation	5	13737575	C	T	21	60
BRCA	TCGA-AR-A0U3	PCDHGB6	SNP	Missense_Mutation	5	140788351	A	T	16	53
BRCA	TCGA-AR-A0U3	MGAM	SNP	Silent	7	141765159	G	A	34	67
BRCA	TCGA-AR-A0U3	MGAM	SNP	Missense_Mutation	7	141765575	A	T	12	85
BRCA	TCGA-AR-A0U3	TEK	SNP	Silent	9	27169494	G	A	46	55
BRCA	TCGA-AR-A0U4	VPS13D	SNP	Missense_Mutation	1	12429735	G	A	46	99
BRCA	TCGA-AR-A0U4	LCE3D	SNP	Missense_Mutation	1	152552220	G	A	38	70
BRCA	TCGA-AR-A0U4	TPM3	SNP	Missense_Mutation	1	154148687	T	G	55	91
BRCA	TCGA-AR-A0U4	ARHGEF2	SNP	Splice_site	1	155921711	C	G	24	56
BRCA	TCGA-AR-A0U4	SLAMF9	SNP	Missense_Mutation	1	159923245	T	G	57	61
BRCA	TCGA-AR-A0U4	SCYL3	SNP	Missense_Mutation	1	169845177	C	G	30	97
BRCA	TCGA-AR-A0U4	RABGAP1L	SNP	Missense_Mutation	1	174274155	A	G	12	75
BRCA	TCGA-AR-A0U4	PLA2G4A	SNP	Missense_Mutation	1	186934649	G	C	33	96
BRCA	TCGA-AR-A0U4	KCNT2	SNP	Missense_Mutation	1	196227288	C	T	19	51
BRCA	TCGA-AR-A0U4	DENND1B	SNP	Silent	1	197586881	G	T	35	59
BRCA	TCGA-AR-A0U4	PRELP	SNP	Missense_Mutation	1	203452522	C	G	30	53
BRCA	TCGA-AR-A0U4	C4BPB	SNP	Nonsense_Mutation	1	207273267	T	A	63	51
BRCA	TCGA-AR-A0U4	DTL	SNP	Missense_Mutation	1	212273666	C	G	23	86
BRCA	TCGA-AR-A0U4	USH2A	SNP	Missense_Mutation	1	216246506	A	T	8	60
BRCA	TCGA-AR-A0U4	FAM177B	SNP	Nonsense_Mutation	1	222923350	C	T	21	58
BRCA	TCGA-AR-A0U4	WDR26	SNP	Silent	1	224621463	C	T	32	65
BRCA	TCGA-AR-A0U4	MIXL1	SNP	Missense_Mutation	1	226413484	C	G	17	65
BRCA	TCGA-AR-A0U4	KIAA1804	SNP	Missense_Mutation	1	233515289	G	A	44	49
BRCA	TCGA-AR-A0U4	CYP4A22	SNP	Silent	1	47610575	G	A	39	50
BRCA	TCGA-AR-A0U4	SPATA6	SNP	Missense_Mutation	1	48771547	C	T	29	72
BRCA	TCGA-AR-A0U4	CAMTA1	SNP	Silent	1	6885189	C	A	32	84
BRCA	TCGA-AR-A0U4	LRRC8D	SNP	Silent	1	90401198	G	C	41	68
BRCA	TCGA-AR-A0U4	WDFY4	SNP	Missense_Mutation	10	50034788	C	T	32	96
BRCA	TCGA-AR-A0U4	RBM17	SNP	Missense_Mutation	10	6157483	C	G	17	64
BRCA	TCGA-AR-A0U4	CCAR1	SNP	Missense_Mutation	10	70531089	G	C	33	98
BRCA	TCGA-AR-A0U4	AIFM2	SNP	Missense_Mutation	10	71883252	G	A	33	96
BRCA	TCGA-AR-A0U4	DYNC2H1	SNP	Silent	11	103043913	A	C	7	55
BRCA	TCGA-AR-A0U4	CASP5	SNP	Missense_Mutation	11	104872843	T	A	52	39
BRCA	TCGA-AR-A0U4	SLC37A2	SNP	Silent	11	124947164	C	T	21	49
BRCA	TCGA-AR-A0U4	OR52N1	SNP	Silent	11	5809246	C	T	22	51
BRCA	TCGA-AR-A0U4	RIC3	SNP	Missense_Mutation	11	8148314	G	C	34	60
BRCA	TCGA-AR-A0U4	IGF1	SNP	Missense_Mutation	12	102811671	G	C	45	62
BRCA	TCGA-AR-A0U4	KSR2	SNP	Silent	12	118105367	G	A	39	56
BRCA	TCGA-AR-A0U4	ANAPC5	SNP	Missense_Mutation	12	121785662	T	A	64	60
BRCA	TCGA-AR-A0U4	EFCAB4B	SNP	Missense_Mutation	12	3806004	C	G	24	53
BRCA	TCGA-AR-A0U4	SPATA13	SNP	Missense_Mutation	13	24876828	C	A	25	98
BRCA	TCGA-AR-A0U4	FRY	SNP	Missense_Mutation	13	32802751	G	T	33	99
BRCA	TCGA-AR-A0U4	DGKH	SNP	Missense_Mutation	13	42748243	T	C	53	73
BRCA	TCGA-AR-A0U4	TEP1	SNP	Missense_Mutation	14	20842649	G	A	45	50
BRCA	TCGA-AR-A0U4	SYNE2	SNP	Missense_Mutation	14	64641829	G	A	45	59
BRCA	TCGA-AR-A0U4	ZFP36L1	SNP	Missense_Mutation	14	69259623	G	C	37	53
BRCA	TCGA-AR-A0U4	AK7	SNP	Nonsense_Mutation	14	96924483	G	T	41	58
BRCA	TCGA-AR-A0U4	BCL11B	DEL	Frame_Shift_Del	14	99642448	T	-	60	77
BRCA	TCGA-AR-A0U4	PCSK6	SNP	Missense_Mutation	15	101872156	A	G	11	60
BRCA	TCGA-AR-A0U4	TUBGCP5	SNP	Silent	15	22840285	G	A	48	52
BRCA	TCGA-AR-A0U4	PGBD4	SNP	Silent	15	34395497	G	C	48	36
BRCA	TCGA-AR-A0U4	CPEB1	SNP	Missense_Mutation	15	83240140	C	G	30	97
BRCA	TCGA-AR-A0U4	FSD2	SNP	Missense_Mutation	15	83438615	T	C	62	86
BRCA	TCGA-AR-A0U4	TTLL13	SNP	Missense_Mutation	15	90794054	A	C	3	60
BRCA	TCGA-AR-A0U4	CRAMP1L	SNP	Missense_Mutation	16	1717989	G	C	34	61
BRCA	TCGA-AR-A0U4	PDILT	SNP	Missense_Mutation	16	20410472	C	T	27	56
BRCA	TCGA-AR-A0U4	USP31	SNP	Silent	16	23091346	C	G	30	57
BRCA	TCGA-AR-A0U4	CHD9	DEL	In_Frame_Del	16	53260373	AAA	-	13	51
BRCA	TCGA-AR-A0U4	CENPT	SNP	Missense_Mutation	16	67866406	C	G	29	62
BRCA	TCGA-AR-A0U4	PMFBP1	SNP	Missense_Mutation	16	72159951	C	G	32	59
BRCA	TCGA-AR-A0U4	KLHDC4	SNP	Missense_Mutation	16	87741983	C	T	23	56
BRCA	TCGA-AR-A0U4	GRIN2A	SNP	Missense_Mutation	16	9934578	A	G	6	77
BRCA	TCGA-AR-A0U4	ZNF624	SNP	Silent	17	16526952	G	A	48	57
BRCA	TCGA-AR-A0U4	BRCA1	INS	Frame_Shift_Ins	17	41244185	-	T	16	49
BRCA	TCGA-AR-A0U4	TEX14	SNP	Missense_Mutation	17	56729272	C	A	17	66
BRCA	TCGA-AR-A0U4	TACO1	SNP	Silent	17	61684785	C	T	29	49
BRCA	TCGA-AR-A0U4	FTSJ3	SNP	Silent	17	61902771	A	C	2	54
BRCA	TCGA-AR-A0U4	LRRC37A3	SNP	Missense_Mutation	17	62856069	C	T	32	62
BRCA	TCGA-AR-A0U4	DNAI2	SNP	Nonsense_Mutation	17	72287263	G	T	47	93
BRCA	TCGA-AR-A0U4	TEN1	SNP	Missense_Mutation	17	73987591	C	T	28	68
BRCA	TCGA-AR-A0U4	TP53	SNP	Missense_Mutation	17	7578272	G	A	46	97
BRCA	TCGA-AR-A0U4	ZNF519	SNP	Nonsense_Mutation	18	14105748	G	T	45	78
BRCA	TCGA-AR-A0U4	ASXL3	SNP	Missense_Mutation	18	31320100	T	G	59	50
BRCA	TCGA-AR-A0U4	MOCOS	DEL	Frame_Shift_Del	18	33785056	A	-	13	38
BRCA	TCGA-AR-A0U4	CETN1	SNP	Silent	18	580663	C	T	28	55
BRCA	TCGA-AR-A0U4	DAZAP1	SNP	Splice_Site	19	1417497	A	C	7	86
BRCA	TCGA-AR-A0U4	ZNF420	SNP	Nonsense_Mutation	19	37619823	C	T	29	45
BRCA	TCGA-AR-A0U4	PSG1	SNP	Silent	19	43372953	G	T	39	61
BRCA	TCGA-AR-A0U4	ZNF274	SNP	Missense_Mutation	19	58724128	A	T	1	50
BRCA	TCGA-AR-A0U4	ZNF544	SNP	Missense_Mutation	19	58772496	C	G	24	63
BRCA	TCGA-AR-A0U4	MUC16	SNP	Missense_Mutation	19	9089290	C	T	20	48
BRCA	TCGA-AR-A0U4	FHL2	SNP	Missense_Mutation	2	105990062	G	T	40	51
BRCA	TCGA-AR-A0U4	IL1A	SNP	Missense_Mutation	2	113532775	C	T	23	53
BRCA	TCGA-AR-A0U4	IL1RN	SNP	Missense_Mutation	2	113885269	C	T	19	76
BRCA	TCGA-AR-A0U4	THSD7B	SNP	Silent	2	137814396	A	G	16	20
BRCA	TCGA-AR-A0U4	SCN3A	SNP	Missense_Mutation	2	165986515	C	T	30	85
BRCA	TCGA-AR-A0U4	DYNC1I2	SNP	Missense_Mutation	2	172582151	G	C	36	76
BRCA	TCGA-AR-A0U4	TTN	SNP	Missense_Mutation	2	179610505	G	T	47	100
BRCA	TCGA-AR-A0U4	ASNSD1	SNP	Silent	2	190532250	C	G	32	53
BRCA	TCGA-AR-A0U4	ANKAR	SNP	Missense_Mutation	2	190611212	G	C	33	54
BRCA	TCGA-AR-A0U4	DOCK10	SNP	Missense_Mutation	2	225695261	G	C	41	49
BRCA	TCGA-AR-A0U4	LOC729898	SNP	Nonsense_Mutation	2	232299105	G	T	48	42
BRCA	TCGA-AR-A0U4	ADCY3	SNP	Missense_Mutation	2	25062816	C	G	32	98
BRCA	TCGA-AR-A0U4	TTC7A	SNP	Missense_Mutation	2	47184096	A	G	2	88
BRCA	TCGA-AR-A0U4	GPR75	SNP	Missense_Mutation	2	54080944	G	C	41	97
BRCA	TCGA-AR-A0U4	PSME4	SNP	Missense_Mutation	2	54131220	G	A	43	100
BRCA	TCGA-AR-A0U4	C2orf73	SNP	Missense_Mutation	2	54570904	A	T	6	58
BRCA	TCGA-AR-A0U4	TOP1	SNP	Missense_Mutation	20	39708771	C	A	30	60
BRCA	TCGA-AR-A0U4	TRMT6	SNP	Missense_Mutation	20	5924616	C	A	25	98
BRCA	TCGA-AR-A0U4	KIAA1210	SNP	Silent	23	118239057	A	T	7	58
BRCA	TCGA-AR-A0U4	AFF2	SNP	Missense_Mutation	23	148044260	G	C	41	57
BRCA	TCGA-AR-A0U4	MAMLD1	SNP	Missense_Mutation	23	149631099	G	A	41	49
BRCA	TCGA-AR-A0U4	DKC1	SNP	Missense_Mutation	23	154004477	G	A	45	77
BRCA	TCGA-AR-A0U4	CASK	SNP	Missense_Mutation	23	41390422	C	A	32	65
BRCA	TCGA-AR-A0U4	DUSP21	SNP	Missense_Mutation	23	44703517	C	T	31	54
BRCA	TCGA-AR-A0U4	ZNF81	SNP	Missense_Mutation	23	47775310	C	A	26	67
BRCA	TCGA-AR-A0U4	PFKFB1	SNP	Missense_Mutation	23	54986262	C	T	25	80
BRCA	TCGA-AR-A0U4	CD24L4	SNP	Missense_Mutation	24	21154479	C	G	32	43
BRCA	TCGA-AR-A0U4	VWA5B2	SNP	Splice_site	3	183951521	G	T	35	82
BRCA	TCGA-AR-A0U4	TRANK1	SNP	Missense_Mutation	3	36873231	C	T	18	65
BRCA	TCGA-AR-A0U4	ITPR1	SNP	Missense_Mutation	3	4774890	A	G	3	89
BRCA	TCGA-AR-A0U4	PRKAR2A	SNP	Missense_Mutation	3	48789035	C	A	22	56
BRCA	TCGA-AR-A0U4	CPNE9	SNP	Splice_site	3	9757047	A	T	11	90
BRCA	TCGA-AR-A0U4	ENSG00000187900	SNP	Nonsense_Mutation	3	97958049	T	G	61	64
BRCA	TCGA-AR-A0U4	CLDND1	SNP	Missense_Mutation	3	98240270	C	G	32	60
BRCA	TCGA-AR-A0U4	ADH6	SNP	Missense_Mutation	4	100126182	C	G	29	68
BRCA	TCGA-AR-A0U4	MTTP	SNP	Missense_Mutation	4	100518317	C	T	25	78
BRCA	TCGA-AR-A0U4	ANKRD50	SNP	Missense_Mutation	4	125591124	G	C	33	96
BRCA	TCGA-AR-A0U4	ENAM	SNP	Missense_Mutation	4	71509354	G	T	46	45
BRCA	TCGA-AR-A0U4	MMRN1	SNP	Missense_Mutation	4	90816579	G	C	34	55
BRCA	TCGA-AR-A0U4	HSPA4	SNP	Missense_Mutation	5	132428416	C	A	18	67
BRCA	TCGA-AR-A0U4	EGR1	SNP	Missense_Mutation	5	137803252	A	C	8	86
BRCA	TCGA-AR-A0U4	DNAH5	SNP	Missense_Mutation	5	13886097	C	A	17	51
BRCA	TCGA-AR-A0U4	PCDHGA4	SNP	Missense_Mutation	5	140735294	G	C	44	48
BRCA	TCGA-AR-A0U4	C5orf4	SNP	Silent	5	154202056	G	C	33	55
BRCA	TCGA-AR-A0U4	SPEF2	SNP	Missense_Mutation	5	35628657	G	C	41	61
BRCA	TCGA-AR-A0U4	CAST	SNP	Nonsense_Mutation	5	96103182	C	G	29	60
BRCA	TCGA-AR-A0U4	HS3ST5	SNP	Missense_Mutation	6	114379035	T	A	50	93
BRCA	TCGA-AR-A0U4	TAAR1	DEL	Frame_Shift_Del	6	132966526	AT	-	8	80
BRCA	TCGA-AR-A0U4	MAS1	SNP	Missense_Mutation	6	160328919	G	C	38	55
BRCA	TCGA-AR-A0U4	BTN3A1	SNP	Silent	6	26413605	A	T	15	29
BRCA	TCGA-AR-A0U4	C6orf222	SNP	Missense_Mutation	6	36294524	G	C	33	58
BRCA	TCGA-AR-A0U4	ZNF318	SNP	Missense_Mutation	6	43322977	G	A	41	68
BRCA	TCGA-AR-A0U4	DST	SNP	Missense_Mutation	6	56380461	T	G	60	67
BRCA	TCGA-AR-A0U4	IMPG1	SNP	Missense_Mutation	6	76660650	C	A	29	54
BRCA	TCGA-AR-A0U4	MICALL2	SNP	Missense_Mutation	7	1474779	G	C	48	55
BRCA	TCGA-AR-A0U4	IL6	DEL	Frame_Shift_Del	7	22767081	C	-	26	66
BRCA	TCGA-AR-A0U4	SNX8	SNP	Silent	7	2296575	G	T	33	51
BRCA	TCGA-AR-A0U4	GPR141	SNP	Silent	7	37780085	C	T	27	44
BRCA	TCGA-AR-A0U4	FBXO32	SNP	Missense_Mutation	8	124525447	C	G	32	56
BRCA	TCGA-AR-A0U4	PPP2CB	SNP	Missense_Mutation	8	30651782	C	G	21	96
BRCA	TCGA-AR-A0U4	ADAM32	SNP	Missense_Mutation	8	39103623	G	T	48	52
BRCA	TCGA-AR-A0U4	KCNS2	DEL	Frame_Shift_Del	8	99440889	GAAATCGTGGAGCA	-	37	79
BRCA	TCGA-AR-A0U4	PRPF4	SNP	Missense_Mutation	9	116048523	G	C	46	100
BRCA	TCGA-AR-A0U4	STXBP1	SNP	Missense_Mutation	9	130428533	C	G	28	97
BRCA	TCGA-AR-A0U4	DCAF12	SNP	Missense_Mutation	9	34093308	C	G	17	98
BRCA	TCGA-AR-A0U4	TRPM3	SNP	Missense_Mutation	9	73461398	T	G	55	94
BRCA	TCGA-AR-A1AH	MRPL20	SNP	Missense_Mutation	1	1337585	G	A	42	88
BRCA	TCGA-AR-A1AH	BCAN	SNP	Missense_Mutation	1	156622540	G	T	42	52
BRCA	TCGA-AR-A1AH	NDUFS2	SNP	Missense_Mutation	1	161179917	T	G	56	87
BRCA	TCGA-AR-A1AH	PADI2	DEL	Frame_Shift_Del	1	17418927	TGTC	-	63	85
BRCA	TCGA-AR-A1AH	CFHR1	SNP	Missense_Mutation	1	196800996	A	G	3	54
BRCA	TCGA-AR-A1AH	PLXNA2	SNP	Silent	1	208216496	G	T	34	56
BRCA	TCGA-AR-A1AH	KCNH1	SNP	Silent	1	210857058	C	A	30	46
BRCA	TCGA-AR-A1AH	USH2A	SNP	Missense_Mutation	1	216371845	T	G	55	59
BRCA	TCGA-AR-A1AH	ENAH	SNP	Missense_Mutation	1	225742665	T	C	63	92
BRCA	TCGA-AR-A1AH	NR0B2	SNP	Missense_Mutation	1	27240275	G	C	45	52
BRCA	TCGA-AR-A1AH	ARHGAP22	SNP	Missense_Mutation	10	49701493	C	T	19	38
BRCA	TCGA-AR-A1AH	TLL2	SNP	Missense_Mutation	10	98146742	T	C	57	65
BRCA	TCGA-AR-A1AH	AMBRA1	SNP	Missense_Mutation	11	46419289	G	T	44	60
BRCA	TCGA-AR-A1AH	OR4C15	SNP	Silent	11	55321983	G	C	47	52
BRCA	TCGA-AR-A1AH	RPS6KA4	SNP	Missense_Mutation	11	64137029	G	A	40	92
BRCA	TCGA-AR-A1AH	UNC93B1	SNP	Missense_Mutation	11	67766699	C	A	22	94
BRCA	TCGA-AR-A1AH	ZNF214	SNP	Missense_Mutation	11	7021508	G	A	43	92
BRCA	TCGA-AR-A1AH	ACACB	SNP	Missense_Mutation	12	109675151	G	A	38	99
BRCA	TCGA-AR-A1AH	ACAD10	SNP	Missense_Mutation	12	112186223	C	A	18	63
BRCA	TCGA-AR-A1AH	TMEM132C	SNP	Silent	12	129178526	C	T	17	76
BRCA	TCGA-AR-A1AH	PTPRO	SNP	Missense_Mutation	12	15673153	C	A	26	94
BRCA	TCGA-AR-A1AH	ITPR2	SNP	Silent	12	26580852	T	G	55	53
BRCA	TCGA-AR-A1AH	WNT10B	SNP	Missense_Mutation	12	49362067	C	T	26	83
BRCA	TCGA-AR-A1AH	ING1	SNP	Missense_Mutation	13	111371953	G	T	38	54
BRCA	TCGA-AR-A1AH	ACOT4	SNP	Silent	14	74058810	C	T	19	53
BRCA	TCGA-AR-A1AH	ISM2	SNP	Silent	14	77951026	A	G	16	48
BRCA	TCGA-AR-A1AH	TIPIN	SNP	Missense_Mutation	15	66644500	A	G	2	69
BRCA	TCGA-AR-A1AH	CCP110	SNP	Missense_Mutation	16	19556209	G	C	36	85
BRCA	TCGA-AR-A1AH	ZNF598	SNP	Silent	16	2050140	C	A	19	11
BRCA	TCGA-AR-A1AH	TNRC6A	SNP	Missense_Mutation	16	24801817	C	A	17	60
BRCA	TCGA-AR-A1AH	KIAA0182	DEL	Frame_Shift_Del	16	85667660	CTGTCGGC	-	28	79
BRCA	TCGA-AR-A1AH	BANP	SNP	Silent	16	88098920	C	T	29	50
BRCA	TCGA-AR-A1AH	SLC47A1	SNP	Missense_Mutation	17	19452969	G	A	37	56
BRCA	TCGA-AR-A1AH	SCN4A	SNP	Silent	17	62034711	G	A	38	49
BRCA	TCGA-AR-A1AH	TP53	DEL	Frame_Shift_Del	17	7579364	CC	-	18	58
BRCA	TCGA-AR-A1AH	DNAH17	SNP	Missense_Mutation	17	76423090	C	A	20	99
BRCA	TCGA-AR-A1AH	OSBPL1A	SNP	Missense_Mutation	18	21745043	C	G	24	52
BRCA	TCGA-AR-A1AH	ASXL3	SNP	Missense_Mutation	18	31314340	C	T	24	75
BRCA	TCGA-AR-A1AH	ZNF791	SNP	Silent	19	12739378	A	G	14	32
BRCA	TCGA-AR-A1AH	CYP4F11	SNP	Splice_site	19	16038292	A	T	7	51
BRCA	TCGA-AR-A1AH	MEF2B	SNP	Silent	19	19258546	G	A	38	41
BRCA	TCGA-AR-A1AH	HAPLN4	SNP	Nonsense_Mutation	19	19381141	G	A	40	45
BRCA	TCGA-AR-A1AH	DKKL1	SNP	Missense_Mutation	19	49869131	G	T	43	53
BRCA	TCGA-AR-A1AH	MYH14	SNP	Nonsense_Mutation	19	50713890	C	T	27	54
BRCA	TCGA-AR-A1AH	PEG3	SNP	Silent	19	57286770	T	C	62	47
BRCA	TCGA-AR-A1AH	KHSRP	INS	Splice_Site	19	6415313	-	TG	28	77
BRCA	TCGA-AR-A1AH	MUC16	SNP	Missense_Mutation	19	9070668	G	T	36	49
BRCA	TCGA-AR-A1AH	LOC100289293	SNP	Silent	2	132724018	C	T	27	36
BRCA	TCGA-AR-A1AH	NEB	SNP	Missense_Mutation	2	152507244	G	T	33	57
BRCA	TCGA-AR-A1AH	LRP2	SNP	Missense_Mutation	2	170063595	C	A	32	53
BRCA	TCGA-AR-A1AH	INPP5D	SNP	Silent	2	233925287	C	T	27	50
BRCA	TCGA-AR-A1AH	UGT1A10	SNP	Missense_Mutation	2	234545725	C	T	24	94
BRCA	TCGA-AR-A1AH	ASXL2	SNP	Silent	2	25994378	T	C	51	42
BRCA	TCGA-AR-A1AH	PRKCE	SNP	Silent	2	46234725	G	A	42	68
BRCA	TCGA-AR-A1AH	PUS10	SNP	Missense_Mutation	2	61175203	G	C	35	86
BRCA	TCGA-AR-A1AH	SOX12	SNP	Silent	20	307342	G	T	46	65
BRCA	TCGA-AR-A1AH	MYH7B	SNP	Splice_Site	20	33577724	T	C	57	85
BRCA	TCGA-AR-A1AH	FAM207A	SNP	Silent	21	46380034	T	C	64	47
BRCA	TCGA-AR-A1AH	L1CAM	SNP	Silent	23	153130155	G	T	33	49
BRCA	TCGA-AR-A1AH	PPEF1	SNP	Missense_Mutation	23	18822127	C	A	21	65
BRCA	TCGA-AR-A1AH	USP27X	SNP	Silent	23	49645615	C	G	28	52
BRCA	TCGA-AR-A1AH	POU3F4	SNP	Silent	23	82763506	G	T	45	53
BRCA	TCGA-AR-A1AH	COL6A5	SNP	Silent	3	130187808	C	T	20	56
BRCA	TCGA-AR-A1AH	CNTN6	SNP	Splice_Site	3	1320096	G	T	33	90
BRCA	TCGA-AR-A1AH	MYD88	SNP	Silent	3	38180431	A	T	10	46
BRCA	TCGA-AR-A1AH	SCN10A	SNP	Missense_Mutation	3	38768529	G	T	45	61
BRCA	TCGA-AR-A1AH	NSUN3	SNP	Missense_Mutation	3	93845211	C	G	19	46
BRCA	TCGA-AR-A1AH	TLL1	SNP	Nonsense_Mutation	4	166913988	C	T	27	68
BRCA	TCGA-AR-A1AH	UGT2B15	SNP	Silent	4	69536304	C	A	29	67
BRCA	TCGA-AR-A1AH	PCDHA9	SNP	Missense_Mutation	5	140230439	G	A	43	55
BRCA	TCGA-AR-A1AH	FAM193B	DEL	Frame_Shift_Del	5	176964948	G	-	37	97
BRCA	TCGA-AR-A1AH	CDH6	SNP	Missense_Mutation	5	31267600	T	G	62	84
BRCA	TCGA-AR-A1AH	HEATR7B2	SNP	Missense_Mutation	5	41048471	C	G	32	63
BRCA	TCGA-AR-A1AH	AKD1	SNP	Missense_Mutation	6	109850252	C	T	26	76
BRCA	TCGA-AR-A1AH	VNN2	SNP	Missense_Mutation	6	133078858	G	C	40	54
BRCA	TCGA-AR-A1AH	SIRT5	SNP	Splice_site	6	13599264	G	C	44	66
BRCA	TCGA-AR-A1AH	RNF182	SNP	Missense_Mutation	6	13977498	A	C	5	89
BRCA	TCGA-AR-A1AH	SYNE1	SNP	Missense_Mutation	6	152639373	C	A	17	75
BRCA	TCGA-AR-A1AH	SYNE1	SNP	Missense_Mutation	6	152716678	A	T	8	60
BRCA	TCGA-AR-A1AH	OPRM1	SNP	Missense_Mutation	6	154412347	G	C	40	88
BRCA	TCGA-AR-A1AH	DPCR1	SNP	Silent	6	30919364	T	C	53	50
BRCA	TCGA-AR-A1AH	MDGA1	SNP	Missense_Mutation	6	37614094	G	T	46	81
BRCA	TCGA-AR-A1AH	C6orf132	SNP	Missense_Mutation	6	42074796	C	G	22	67
BRCA	TCGA-AR-A1AH	LOC100288198	SNP	Missense_Mutation	6	79944327	G	C	47	75
BRCA	TCGA-AR-A1AH	C7orf61	SNP	Missense_Mutation	7	100054503	C	T	19	44
BRCA	TCGA-AR-A1AH	SND1	SNP	Silent	7	127731927	C	T	27	44
BRCA	TCGA-AR-A1AH	CTAGE6	SNP	Missense_Mutation	7	143453654	C	A	25	41
BRCA	TCGA-AR-A1AH	C7orf10	SNP	Missense_Mutation	7	40723677	G	C	34	51
BRCA	TCGA-AR-A1AH	KIAA1324L	SNP	Missense_Mutation	7	86522367	G	T	33	87
BRCA	TCGA-AR-A1AH	KIAA1324L	SNP	Splice_Site	7	86544037	A	G	14	89
BRCA	TCGA-AR-A1AH	ADAMDEC1	SNP	Silent	8	24257811	G	A	45	60
BRCA	TCGA-AR-A1AH	ADRA1A	SNP	Missense_Mutation	8	26721870	C	T	27	100
BRCA	TCGA-AR-A1AH	TM2D2	DEL	In_Frame_Del	8	38852949	ATC	-	12	42
BRCA	TCGA-AR-A1AH	CLDN23	SNP	Silent	8	8560424	G	T	47	61
BRCA	TCGA-AR-A1AH	SLC27A4	SNP	Missense_Mutation	9	131105549	C	A	29	62
BRCA	TCGA-AR-A1AH	WNK2	SNP	Missense_Mutation	9	96051807	G	C	41	58
BRCA	TCGA-AR-A1AH	PTCH1	SNP	Missense_Mutation	9	98278972	T	C	62	48
BRCA	TCGA-AR-A1AI	ANGEL2	SNP	Silent	1	213174228	C	A	22	72
BRCA	TCGA-AR-A1AI	MYOM3	SNP	Silent	1	24402671	G	A	39	28
BRCA	TCGA-AR-A1AI	ARID5B	SNP	Silent	10	63662061	G	C	39	60
BRCA	TCGA-AR-A1AI	USP47	SNP	Missense_Mutation	11	11964198	G	T	34	80
BRCA	TCGA-AR-A1AI	RAG1	SNP	Missense_Mutation	11	36597453	G	A	41	99
BRCA	TCGA-AR-A1AI	ENSG00000186232	SNP	Missense_Mutation	11	4351584	C	A	25	61
BRCA	TCGA-AR-A1AI	ANAPC5	SNP	Missense_Mutation	12	121747576	G	A	37	65
BRCA	TCGA-AR-A1AI	P2RX2	SNP	Missense_Mutation	12	133197899	G	A	39	85
BRCA	TCGA-AR-A1AI	BRCA2	SNP	Splice_site	13	32921032	C	T	31	44
BRCA	TCGA-AR-A1AI	MYH7	SNP	Missense_Mutation	14	23894170	C	A	30	98
BRCA	TCGA-AR-A1AI	PRKD1	SNP	Missense_Mutation	14	30095732	C	G	29	100
BRCA	TCGA-AR-A1AI	DUOX2	SNP	Silent	15	45392973	C	G	29	58
BRCA	TCGA-AR-A1AI	DMXL2	SNP	Silent	15	51766785	C	G	29	68
BRCA	TCGA-AR-A1AI	LCTL	DEL	Splice_site	15	66853439	C	-	26	60
BRCA	TCGA-AR-A1AI	TSR3	SNP	Missense_Mutation	16	1400125	C	T	30	71
BRCA	TCGA-AR-A1AI	PDXDC1	SNP	Missense_Mutation	16	15112739	C	T	20	89
BRCA	TCGA-AR-A1AI	PSMD7	SNP	Missense_Mutation	16	74334086	G	A	48	100
BRCA	TCGA-AR-A1AI	MPP2	SNP	Splice_Site	17	41960570	C	A	18	90
BRCA	TCGA-AR-A1AI	USP32	SNP	Silent	17	58275782	C	T	17	58
BRCA	TCGA-AR-A1AI	NEURL4	SNP	Silent	17	7225003	G	A	47	73
BRCA	TCGA-AR-A1AI	TP53	SNP	Missense_Mutation	17	7577130	A	T	3	87
BRCA	TCGA-AR-A1AI	CHD3	SNP	Missense_Mutation	17	7796726	C	T	27	95
BRCA	TCGA-AR-A1AI	MC5R	SNP	Silent	18	13826448	G	A	38	53
BRCA	TCGA-AR-A1AI	LOC100128975	DEL	Frame_Shift_Del	19	20047664	C	-	18	59
BRCA	TCGA-AR-A1AI	ZNF675	SNP	Missense_Mutation	19	23836780	T	G	63	75
BRCA	TCGA-AR-A1AI	CYP2A13	SNP	Missense_Mutation	19	41594877	C	T	22	53
BRCA	TCGA-AR-A1AI	NLRP12	DEL	Frame_Shift_Del	19	54313970	C	-	30	55
BRCA	TCGA-AR-A1AI	LENG1	SNP	Silent	19	54660722	G	A	42	61
BRCA	TCGA-AR-A1AI	ZNF582	SNP	Missense_Mutation	19	56896091	C	T	17	97
BRCA	TCGA-AR-A1AI	ZDBF2	DEL	Frame_Shift_Del	2	207174888	C	-	28	52
BRCA	TCGA-AR-A1AI	ADCY3	SNP	Missense_Mutation	2	25047329	C	T	31	99
BRCA	TCGA-AR-A1AI	PDRG1	SNP	Missense_Mutation	20	30534308	C	G	29	78
BRCA	TCGA-AR-A1AI	PDGFB	DEL	Frame_Shift_Del	22	39626161	C	-	26	65
BRCA	TCGA-AR-A1AI	PKDREJ	SNP	Silent	22	46654720	A	C	7	41
BRCA	TCGA-AR-A1AI	DOCK11	SNP	Missense_Mutation	23	117679333	A	T	12	80
BRCA	TCGA-AR-A1AI	MTCP1NB	SNP	Nonsense_Mutation	23	154290173	G	T	45	82
BRCA	TCGA-AR-A1AI	CCNB3	DEL	Frame_Shift_Del	23	50052008	C	-	18	53
BRCA	TCGA-AR-A1AI	SLC7A3	DEL	Frame_Shift_Del	23	70147461	G	-	47	51
BRCA	TCGA-AR-A1AI	CLSTN2	SNP	Silent	3	140277551	C	T	31	37
BRCA	TCGA-AR-A1AI	IGSF10	SNP	Missense_Mutation	3	151160895	G	A	41	86
BRCA	TCGA-AR-A1AI	ARHGEF3	SNP	Missense_Mutation	3	56779405	C	T	31	100
BRCA	TCGA-AR-A1AI	ZNF330	SNP	Missense_Mutation	4	142151378	T	A	63	80
BRCA	TCGA-AR-A1AI	TAPT1	SNP	Missense_Mutation	4	16177795	C	T	19	99
BRCA	TCGA-AR-A1AI	ANKRD17	SNP	Missense_Mutation	4	73957689	G	A	41	82
BRCA	TCGA-AR-A1AI	CDS1	SNP	Missense_Mutation	4	85525478	G	C	33	75
BRCA	TCGA-AR-A1AI	MAPK10	SNP	Missense_Mutation	4	87028500	G	A	38	85
BRCA	TCGA-AR-A1AI	TAF7	SNP	Missense_Mutation	5	140699073	C	G	23	78
BRCA	TCGA-AR-A1AI	PCDHGA1	SNP	Missense_Mutation	5	140711613	G	T	35	58
BRCA	TCGA-AR-A1AI	LPCAT1	SNP	Missense_Mutation	5	1463930	C	T	32	67
BRCA	TCGA-AR-A1AI	BRIX1	SNP	Missense_Mutation	5	34925371	G	C	33	49
BRCA	TCGA-AR-A1AI	CMYA5	SNP	Missense_Mutation	5	79084809	C	G	29	50
BRCA	TCGA-AR-A1AI	CDK19	SNP	Missense_Mutation	6	110948277	C	T	32	95
BRCA	TCGA-AR-A1AI	RFX6	SNP	Missense_Mutation	6	117252535	T	C	51	90
BRCA	TCGA-AR-A1AI	COL12A1	SNP	Missense_Mutation	6	75893090	T	G	52	93
BRCA	TCGA-AR-A1AI	UFL1	SNP	Missense_Mutation	6	97001226	G	C	33	66
BRCA	TCGA-AR-A1AI	RAMP3	DEL	Frame_Shift_Del	7	45222967	G	-	47	61
BRCA	TCGA-AR-A1AI	COL1A2	SNP	Silent	7	94056944	C	A	22	53
BRCA	TCGA-AR-A1AI	DYNC1I1	SNP	Missense_Mutation	7	95668673	C	A	20	69
BRCA	TCGA-AR-A1AI	MSR1	DEL	Frame_Shift_Del	8	16007748	C	-	30	73
BRCA	TCGA-AR-A1AI	PRDM14	SNP	Silent	8	70980489	G	A	40	45
BRCA	TCGA-AR-A1AI	OSR2	SNP	Missense_Mutation	8	99963751	C	T	32	100
BRCA	TCGA-AR-A1AI	TTC39B	DEL	Splice_site	9	15210087	T	-	56	65
BRCA	TCGA-AR-A1AI	TRPM6	SNP	Missense_Mutation	9	77455078	G	A	42	100
BRCA	TCGA-AR-A1AJ	FLG	SNP	Missense_Mutation	1	152282321	G	A	48	68
BRCA	TCGA-AR-A1AJ	MMEL1	SNP	Silent	1	2535380	G	A	45	53
BRCA	TCGA-AR-A1AJ	C10orf71	SNP	Missense_Mutation	10	50533921	G	A	41	66
BRCA	TCGA-AR-A1AJ	PTEN	SNP	Missense_Mutation	10	89624254	A	C	15	85
BRCA	TCGA-AR-A1AJ	WT1	SNP	Silent	11	32450119	C	T	27	51
BRCA	TCGA-AR-A1AJ	IGHV3-6	SNP	Silent	14	106320472	G	A	39	40
BRCA	TCGA-AR-A1AJ	HERC2	SNP	Missense_Mutation	15	28493757	C	T	19	80
BRCA	TCGA-AR-A1AJ	BAIAP3	SNP	Missense_Mutation	16	1394995	C	T	19	63
BRCA	TCGA-AR-A1AJ	RBFOX1	SNP	Silent	16	7383011	G	A	40	54
BRCA	TCGA-AR-A1AJ	SARM1	DEL	Frame_Shift_Del	17	26712099	T	-	53	92
BRCA	TCGA-AR-A1AJ	SARM1	DEL	Frame_Shift_Del	17	26712101	T	-	52	51
BRCA	TCGA-AR-A1AJ	EFCAB3	SNP	Missense_Mutation	17	60464771	A	G	4	49
BRCA	TCGA-AR-A1AJ	TP53	SNP	Missense_Mutation	17	7577120	C	T	19	94
BRCA	TCGA-AR-A1AJ	ARHGEF15	SNP	Missense_Mutation	17	8215645	C	G	25	51
BRCA	TCGA-AR-A1AJ	MIB1	SNP	Missense_Mutation	18	19371349	C	T	24	100
BRCA	TCGA-AR-A1AJ	ZNF724P	SNP	Missense_Mutation	19	23406559	T	C	51	62
BRCA	TCGA-AR-A1AJ	KCNQ2	SNP	Missense_Mutation	20	62065186	C	T	31	74
BRCA	TCGA-AR-A1AJ	PWP2	SNP	Missense_Mutation	21	45545915	G	A	45	81
BRCA	TCGA-AR-A1AJ	LOC727838	SNP	Silent	23	118207956	C	T	23	51
BRCA	TCGA-AR-A1AJ	DCAF8L1	SNP	Missense_Mutation	23	27999024	A	T	4	69
BRCA	TCGA-AR-A1AJ	P4HTM	SNP	Missense_Mutation	3	49038967	A	C	11	77
BRCA	TCGA-AR-A1AJ	WWC2	SNP	Missense_Mutation	4	184182178	G	A	37	98
BRCA	TCGA-AR-A1AJ	TCF7	SNP	Missense_Mutation	5	133478723	G	A	45	98
BRCA	TCGA-AR-A1AJ	DNAH5	SNP	Silent	5	13735415	C	T	31	40
BRCA	TCGA-AR-A1AJ	LOC100131573	SNP	Missense_Mutation	5	93928495	T	G	53	58
BRCA	TCGA-AR-A1AJ	HSP90AB1	DEL	In_Frame_Del	6	44219919	AGA	-	11	89
BRCA	TCGA-AR-A1AJ	SDK1	SNP	Missense_Mutation	7	4091315	A	G	6	76
BRCA	TCGA-AR-A1AJ	SDCCAG3	SNP	Missense_Mutation	9	139301619	G	C	40	68
BRCA	TCGA-AR-A1AK	TRIM45	SNP	Missense_Mutation	1	117663630	C	G	31	68
BRCA	TCGA-AR-A1AK	RAB13	SNP	Missense_Mutation	1	153954902	G	A	39	57
BRCA	TCGA-AR-A1AK	CFHR4	SNP	Missense_Mutation	1	196871653	A	G	14	44
BRCA	TCGA-AR-A1AK	SLC30A10	SNP	Missense_Mutation	1	220089147	C	G	32	61
BRCA	TCGA-AR-A1AK	CTH	SNP	Nonsense_Mutation	1	70897810	C	T	31	66
BRCA	TCGA-AR-A1AK	AKR1C1	SNP	Missense_Mutation	10	5010513	G	A	36	13
BRCA	TCGA-AR-A1AK	SEC24C	SNP	Silent	10	75528883	C	T	29	50
BRCA	TCGA-AR-A1AK	SEC24C	SNP	Nonsense_Mutation	10	75530080	C	T	31	68
BRCA	TCGA-AR-A1AK	SEC24C	SNP	Missense_Mutation	10	75530798	C	T	32	100
BRCA	TCGA-AR-A1AK	C10orf12	SNP	Missense_Mutation	10	98744191	G	A	40	69
BRCA	TCGA-AR-A1AK	TRIM49B	SNP	Missense_Mutation	11	49053416	G	A	45	54
BRCA	TCGA-AR-A1AK	DNHD1	SNP	Silent	11	6519529	C	G	32	55
BRCA	TCGA-AR-A1AK	PC	SNP	Nonsense_Mutation	11	66617203	G	T	45	79
BRCA	TCGA-AR-A1AK	WEE1	SNP	Missense_Mutation	11	9598152	G	A	41	100
BRCA	TCGA-AR-A1AK	COQ10A	SNP	Missense_Mutation	12	56663001	C	T	32	97
BRCA	TCGA-AR-A1AK	ARHGAP9	SNP	Missense_Mutation	12	57872994	G	A	40	57
BRCA	TCGA-AR-A1AK	SPATA13	SNP	Missense_Mutation	13	24798398	C	G	30	66
BRCA	TCGA-AR-A1AK	B3GALTL	SNP	Silent	13	31897924	C	T	31	45
BRCA	TCGA-AR-A1AK	LRRC16B	SNP	Missense_Mutation	14	24532005	C	T	23	64
BRCA	TCGA-AR-A1AK	SYNE2	SNP	Missense_Mutation	14	64540727	C	A	20	56
BRCA	TCGA-AR-A1AK	UBE3A	SNP	Missense_Mutation	15	25616325	C	G	32	71
BRCA	TCGA-AR-A1AK	HCN4	SNP	Missense_Mutation	15	73615867	G	A	41	89
BRCA	TCGA-AR-A1AK	TMC7	SNP	Missense_Mutation	16	19020581	G	A	35	51
BRCA	TCGA-AR-A1AK	SRCAP	SNP	Missense_Mutation	16	30732773	C	T	30	98
BRCA	TCGA-AR-A1AK	ELAC2	SNP	Missense_Mutation	17	12903496	G	A	38	47
BRCA	TCGA-AR-A1AK	DLX3	SNP	Silent	17	48070938	C	T	28	75
BRCA	TCGA-AR-A1AK	COIL	SNP	Nonsense_Mutation	17	55038347	G	A	45	61
BRCA	TCGA-AR-A1AK	ST6GALNAC2	SNP	Missense_Mutation	17	74566725	G	A	45	57
BRCA	TCGA-AR-A1AK	GREB1L	SNP	Silent	18	19085428	C	T	31	54
BRCA	TCGA-AR-A1AK	COL5A3	SNP	Missense_Mutation	19	10114309	C	T	22	71
BRCA	TCGA-AR-A1AK	JAK3	SNP	Missense_Mutation	19	17945508	C	T	23	50
BRCA	TCGA-AR-A1AK	CCDC138	SNP	Missense_Mutation	2	109473397	A	T	12	78
BRCA	TCGA-AR-A1AK	RABL2A	SNP	Missense_Mutation	2	114392640	C	T	19	90
BRCA	TCGA-AR-A1AK	ARHGEF4	SNP	Missense_Mutation	2	131704164	C	T	19	47
BRCA	TCGA-AR-A1AK	LY75-CD302	SNP	Missense_Mutation	2	160714934	A	T	13	48
BRCA	TCGA-AR-A1AK	FAP	SNP	Missense_Mutation	2	163044844	C	G	24	53
BRCA	TCGA-AR-A1AK	TTN	SNP	Missense_Mutation	2	179600355	C	A	32	80
BRCA	TCGA-AR-A1AK	MYT1L	SNP	Missense_Mutation	2	1926197	C	A	29	87
BRCA	TCGA-AR-A1AK	WDFY1	SNP	Missense_Mutation	2	224782704	C	T	32	91
BRCA	TCGA-AR-A1AK	SUN5	SNP	Missense_Mutation	20	31573550	C	A	19	73
BRCA	TCGA-AR-A1AK	XBP1	INS	Frame_Shift_Ins	22	29191587	-	G	3	73
BRCA	TCGA-AR-A1AK	MAOA	SNP	Missense_Mutation	23	43590602	A	G	8	62
BRCA	TCGA-AR-A1AK	MAOB	SNP	Missense_Mutation	23	43698178	G	T	42	95
BRCA	TCGA-AR-A1AK	HEPH	SNP	Silent	23	65427137	C	A	31	54
BRCA	TCGA-AR-A1AK	PLA1A	SNP	Missense_Mutation	3	119327774	C	T	24	52
BRCA	TCGA-AR-A1AK	ZNF660	SNP	Nonsense_Mutation	3	44636310	C	T	29	55
BRCA	TCGA-AR-A1AK	IQCF3	SNP	Silent	3	51864469	G	A	33	57
BRCA	TCGA-AR-A1AK	FHDC1	SNP	Missense_Mutation	4	153889196	G	C	33	94
BRCA	TCGA-AR-A1AK	PAICS	SNP	Silent	4	57314718	G	T	47	65
BRCA	TCGA-AR-A1AK	CTNNA1	SNP	Silent	5	138117646	C	T	29	69
BRCA	TCGA-AR-A1AK	PCDHB7	SNP	Missense_Mutation	5	140552846	G	C	33	95
BRCA	TCGA-AR-A1AK	TRIO	SNP	Missense_Mutation	5	14472760	T	C	59	92
BRCA	TCGA-AR-A1AK	ZNF131	SNP	Silent	5	43175004	G	A	43	63
BRCA	TCGA-AR-A1AK	AIM1	SNP	Missense_Mutation	6	106991455	G	C	45	59
BRCA	TCGA-AR-A1AK	GCM2	SNP	Nonsense_Mutation	6	10876743	G	A	37	77
BRCA	TCGA-AR-A1AK	LPA	SNP	Splice_Site	6	160968970	C	T	32	63
BRCA	TCGA-AR-A1AK	WNT2	SNP	Missense_Mutation	7	116955280	C	T	27	51
BRCA	TCGA-AR-A1AK	NOD1	SNP	Missense_Mutation	7	30496531	C	G	32	52
BRCA	TCGA-AR-A1AK	MTSS1	SNP	Missense_Mutation	8	125565583	G	A	38	51
BRCA	TCGA-AR-A1AK	TNKS	SNP	Silent	8	9619112	C	A	29	60
BRCA	TCGA-AR-A1AK	C9orf163	SNP	Silent	9	139379395	C	T	29	53
BRCA	TCGA-AR-A1AL	TSPAN2	SNP	Silent	1	115615557	T	C	55	51
BRCA	TCGA-AR-A1AL	C4BPA	SNP	Missense_Mutation	1	207288784	G	C	33	65
BRCA	TCGA-AR-A1AL	ARF1	SNP	Missense_Mutation	1	228285614	G	A	38	100
BRCA	TCGA-AR-A1AL	AHCTF1	SNP	Missense_Mutation	1	247063726	T	G	52	89
BRCA	TCGA-AR-A1AL	CALHM2	SNP	Missense_Mutation	10	105207117	G	A	38	70
BRCA	TCGA-AR-A1AL	SORBS1	SNP	Silent	10	97174350	C	A	27	43
BRCA	TCGA-AR-A1AL	IFT46	SNP	Missense_Mutation	11	118425295	C	T	19	84
BRCA	TCGA-AR-A1AL	MTERFD3	SNP	Silent	12	107372349	T	C	55	42
BRCA	TCGA-AR-A1AL	KRAS	SNP	Missense_Mutation	12	25398285	C	A	21	99
BRCA	TCGA-AR-A1AL	PROSER1	SNP	Missense_Mutation	13	39587543	G	A	41	93
BRCA	TCGA-AR-A1AL	DLL4	SNP	Missense_Mutation	15	41227207	C	T	23	56
BRCA	TCGA-AR-A1AL	TNRC6A	SNP	Missense_Mutation	16	24833445	G	A	48	100
BRCA	TCGA-AR-A1AL	RPGRIP1L	SNP	Missense_Mutation	16	53691373	C	G	32	93
BRCA	TCGA-AR-A1AL	CDH1	DEL	Frame_Shift_Del	16	68849608	A	-	9	54
BRCA	TCGA-AR-A1AL	ARHGAP28	SNP	Silent	18	6837323	G	A	33	60
BRCA	TCGA-AR-A1AL	MOGS	SNP	Missense_Mutation	2	74689879	T	C	52	49
BRCA	TCGA-AR-A1AL	TAF1	SNP	Missense_Mutation	23	70602701	G	A	47	75
BRCA	TCGA-AR-A1AL	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-AR-A1AL	GIN1	SNP	Missense_Mutation	5	102432415	T	A	64	78
BRCA	TCGA-AR-A1AL	HIVEP1	SNP	Missense_Mutation	6	12163882	T	C	58	41
BRCA	TCGA-AR-A1AL	ETV1	SNP	Missense_Mutation	7	13940377	C	T	24	100
BRCA	TCGA-AR-A1AL	ENG	SNP	Silent	9	130580642	T	C	51	47
BRCA	TCGA-AR-A1AL	TOR1A	SNP	Missense_Mutation	9	132576329	G	T	41	69
BRCA	TCGA-AR-A1AL	GPSM1	SNP	Silent	9	139229081	C	T	19	53
BRCA	TCGA-AR-A1AN	ATF3	SNP	Missense_Mutation	1	212792849	G	C	33	57
BRCA	TCGA-AR-A1AN	CCDC24	SNP	Missense_Mutation	1	44458238	C	T	25	74
BRCA	TCGA-AR-A1AN	COL24A1	SNP	Missense_Mutation	1	86591291	C	T	27	48
BRCA	TCGA-AR-A1AN	DNAJC1	SNP	Nonsense_Mutation	10	22217445	G	A	40	57
BRCA	TCGA-AR-A1AN	POU2F3	SNP	Silent	11	120180259	C	T	21	52
BRCA	TCGA-AR-A1AN	PRCP	SNP	Missense_Mutation	11	82561013	G	A	48	45
BRCA	TCGA-AR-A1AN	WWP2	SNP	Missense_Mutation	16	69832690	G	A	38	79
BRCA	TCGA-AR-A1AN	TP53	DEL	Frame_Shift_Del	17	7579359	G	-	39	49
BRCA	TCGA-AR-A1AN	PPAN	SNP	Missense_Mutation	19	10221623	C	G	24	51
BRCA	TCGA-AR-A1AN	UNC13A	SNP	Missense_Mutation	19	17760329	C	T	19	92
BRCA	TCGA-AR-A1AN	TSHZ3	SNP	Missense_Mutation	19	31770592	G	A	40	62
BRCA	TCGA-AR-A1AN	ATP4A	SNP	Splice_Site	19	36054519	C	T	19	62
BRCA	TCGA-AR-A1AN	RUNX1	SNP	Missense_Mutation	21	36252880	A	G	11	92
BRCA	TCGA-AR-A1AN	BCORL1	SNP	Missense_Mutation	23	129189983	G	A	37	91
BRCA	TCGA-AR-A1AN	HCFC1	SNP	Missense_Mutation	23	153219074	G	A	39	98
BRCA	TCGA-AR-A1AN	MAGEB16	SNP	Silent	23	35820757	G	A	33	45
BRCA	TCGA-AR-A1AN	TSR2	SNP	Missense_Mutation	23	54470525	C	G	29	80
BRCA	TCGA-AR-A1AN	MAGEE2	SNP	Missense_Mutation	23	75004102	G	C	48	55
BRCA	TCGA-AR-A1AN	GRM6	SNP	Missense_Mutation	5	178415975	G	A	38	72
BRCA	TCGA-AR-A1AN	HCN1	SNP	Silent	5	45262056	G	A	40	45
BRCA	TCGA-AR-A1AN	OR2A1	SNP	Silent	7	144015463	G	A	37	47
BRCA	TCGA-AR-A1AN	MPDZ	SNP	Missense_Mutation	9	13224396	G	C	45	82
BRCA	TCGA-AR-A1AO	CEP170	SNP	Silent	1	243349521	C	G	32	83
BRCA	TCGA-AR-A1AO	ERP29	SNP	Silent	12	112460210	C	G	32	51
BRCA	TCGA-AR-A1AO	C14orf102	SNP	Silent	14	90754814	G	A	34	94
BRCA	TCGA-AR-A1AO	ENSG00000214896	SNP	Missense_Mutation	15	53178012	T	C	49	53
BRCA	TCGA-AR-A1AO	SLC24A1	SNP	Missense_Mutation	15	65918127	T	G	49	65
BRCA	TCGA-AR-A1AO	CYP1A1	SNP	Silent	15	75015349	T	C	58	49
BRCA	TCGA-AR-A1AO	GRIN2D	SNP	Missense_Mutation	19	48945508	G	A	40	94
BRCA	TCGA-AR-A1AO	SH2D3A	SNP	Missense_Mutation	19	6754155	G	A	40	89
BRCA	TCGA-AR-A1AO	COL6A5	SNP	Missense_Mutation	3	130150403	C	G	29	67
BRCA	TCGA-AR-A1AO	ENSG00000229429	SNP	Missense_Mutation	7	99808811	G	A	45	57
BRCA	TCGA-AR-A1AP	FLG	SNP	Missense_Mutation	1	152285017	C	T	23	45
BRCA	TCGA-AR-A1AP	PDZD7	SNP	Missense_Mutation	10	102777873	C	T	27	40
BRCA	TCGA-AR-A1AP	CPXM2	SNP	Missense_Mutation	10	125650959	G	T	43	52
BRCA	TCGA-AR-A1AP	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-AR-A1AP	ANKRD13D	SNP	Missense_Mutation	11	67066581	G	A	39	98
BRCA	TCGA-AR-A1AP	ARHGEF17	SNP	Silent	11	73020826	G	T	47	57
BRCA	TCGA-AR-A1AP	PRB2	SNP	Missense_Mutation	12	11546473	G	A	47	46
BRCA	TCGA-AR-A1AP	COL4A1	SNP	Missense_Mutation	13	110826988	C	T	23	98
BRCA	TCGA-AR-A1AP	SPERT	SNP	Missense_Mutation	13	46287926	G	A	38	65
BRCA	TCGA-AR-A1AP	MMP14	SNP	Missense_Mutation	14	23314527	G	A	41	60
BRCA	TCGA-AR-A1AP	C14orf37	SNP	Missense_Mutation	14	58605863	C	T	29	62
BRCA	TCGA-AR-A1AP	LOC100288601	SNP	Missense_Mutation	15	30896450	C	T	32	51
BRCA	TCGA-AR-A1AP	RAI1	SNP	Missense_Mutation	17	17696987	C	T	23	94
BRCA	TCGA-AR-A1AP	SLFN11	SNP	Missense_Mutation	17	33689955	C	T	27	44
BRCA	TCGA-AR-A1AP	DHX58	SNP	Missense_Mutation	17	40257115	G	A	38	75
BRCA	TCGA-AR-A1AP	MPO	SNP	Missense_Mutation	17	56355208	C	T	27	58
BRCA	TCGA-AR-A1AP	CSH1	SNP	Missense_Mutation	17	61972940	G	A	38	58
BRCA	TCGA-AR-A1AP	TP53	SNP	Nonsense_Mutation	17	7578263	G	A	39	67
BRCA	TCGA-AR-A1AP	ZNF726	SNP	Missense_Mutation	19	24115276	G	T	48	57
BRCA	TCGA-AR-A1AP	URI1	SNP	Silent	19	30505832	A	G	6	44
BRCA	TCGA-AR-A1AP	MAP4K1	SNP	Missense_Mutation	19	39098654	C	T	31	40
BRCA	TCGA-AR-A1AP	SCN7A	SNP	Splice_site	2	167330310	C	G	32	57
BRCA	TCGA-AR-A1AP	AQP12A	SNP	Missense_Mutation	2	241633892	C	A	26	66
BRCA	TCGA-AR-A1AP	C20orf26	SNP	Missense_Mutation	20	20150064	G	A	37	50
BRCA	TCGA-AR-A1AP	TOX2	SNP	Missense_Mutation	20	42683009	A	T	3	90
BRCA	TCGA-AR-A1AP	CLIC6	SNP	Silent	21	36042890	G	A	35	52
BRCA	TCGA-AR-A1AP	SAT1	SNP	Missense_Mutation	23	23803899	C	A	32	83
BRCA	TCGA-AR-A1AP	GPR128	SNP	Missense_Mutation	3	100378672	A	G	2	64
BRCA	TCGA-AR-A1AP	DZIP3	SNP	Missense_Mutation	3	108335487	C	G	29	73
BRCA	TCGA-AR-A1AP	TGFBR2	SNP	Missense_Mutation	3	30729932	G	A	37	100
BRCA	TCGA-AR-A1AP	TMPPE	SNP	Silent	3	33135082	G	C	35	41
BRCA	TCGA-AR-A1AP	GLYCTK	SNP	Missense_Mutation	3	52326415	G	A	40	61
BRCA	TCGA-AR-A1AP	STX19	SNP	Missense_Mutation	3	93733513	C	T	32	96
BRCA	TCGA-AR-A1AP	ODZ3	SNP	Missense_Mutation	4	183713590	C	T	26	99
BRCA	TCGA-AR-A1AP	SNX25	SNP	Missense_Mutation	4	186188240	C	T	26	95
BRCA	TCGA-AR-A1AP	KIAA1239	SNP	Missense_Mutation	4	37446793	C	G	29	69
BRCA	TCGA-AR-A1AP	NOX3	SNP	Silent	6	155761188	C	T	19	40
BRCA	TCGA-AR-A1AP	KIAA1324L	SNP	Missense_Mutation	7	86537023	G	A	41	93
BRCA	TCGA-AR-A1AP	TG	SNP	Silent	8	133882025	C	T	19	34
BRCA	TCGA-AR-A1AQ	SPTA1	SNP	Missense_Mutation	1	158615165	G	A	34	54
BRCA	TCGA-AR-A1AQ	C1orf192	INS	Splice_Site	1	161337629	-	A	61	63
BRCA	TCGA-AR-A1AQ	PLD5	SNP	Splice_site	1	242287770	C	T	23	80
BRCA	TCGA-AR-A1AQ	IPO13	SNP	Silent	1	44413299	G	T	43	53
BRCA	TCGA-AR-A1AQ	LRRC41	DEL	Frame_Shift_Del	1	46746855	A	-	7	51
BRCA	TCGA-AR-A1AQ	PARD3	SNP	Missense_Mutation	10	34400454	G	C	36	49
BRCA	TCGA-AR-A1AQ	AASDHPPT	SNP	Missense_Mutation	11	105948464	C	G	28	51
BRCA	TCGA-AR-A1AQ	ABCC8	SNP	Missense_Mutation	11	17498260	G	A	35	81
BRCA	TCGA-AR-A1AQ	STIM1	SNP	Missense_Mutation	11	4091418	A	G	8	74
BRCA	TCGA-AR-A1AQ	OR51C1P	SNP	Missense_Mutation	11	4712725	C	T	27	51
BRCA	TCGA-AR-A1AQ	AP5B1	DEL	Frame_Shift_Del	11	65545388	TCGG	-	50	61
BRCA	TCGA-AR-A1AQ	LIPT2	SNP	Silent	11	74203306	T	G	55	51
BRCA	TCGA-AR-A1AQ	ATN1	SNP	Missense_Mutation	12	7048007	C	T	17	80
BRCA	TCGA-AR-A1AQ	FLT1	SNP	Missense_Mutation	13	28896410	A	G	10	72
BRCA	TCGA-AR-A1AQ	RB1	SNP	Nonsense_Mutation	13	48934189	C	G	29	83
BRCA	TCGA-AR-A1AQ	ATG2B	SNP	Missense_Mutation	14	96779679	C	A	25	81
BRCA	TCGA-AR-A1AQ	CCPG1	SNP	Missense_Mutation	15	55681620	C	G	17	78
BRCA	TCGA-AR-A1AQ	CORO7	SNP	Silent	16	4458194	C	A	23	30
BRCA	TCGA-AR-A1AQ	WWP2	DEL	Frame_Shift_Del	16	69972999	C	-	26	99
BRCA	TCGA-AR-A1AQ	FLII	SNP	Missense_Mutation	17	18155040	A	C	7	91
BRCA	TCGA-AR-A1AQ	MYO18A	SNP	Missense_Mutation	17	27401792	G	A	46	64
BRCA	TCGA-AR-A1AQ	TP53	DEL	Frame_Shift_Del	17	7574003	G	-	39	57
BRCA	TCGA-AR-A1AQ	GREB1L	SNP	Missense_Mutation	18	19102675	C	T	23	98
BRCA	TCGA-AR-A1AQ	DCC	SNP	Missense_Mutation	18	50985621	G	A	46	68
BRCA	TCGA-AR-A1AQ	S1PR2	SNP	Silent	19	10334727	G	A	39	32
BRCA	TCGA-AR-A1AQ	NWD1	SNP	Missense_Mutation	19	16918910	T	C	55	80
BRCA	TCGA-AR-A1AQ	ZNF726	SNP	Missense_Mutation	19	24116016	G	C	33	66
BRCA	TCGA-AR-A1AQ	PIP5K1C	SNP	Missense_Mutation	19	3643289	G	A	41	90
BRCA	TCGA-AR-A1AQ	MUC16	SNP	Silent	19	9074465	G	A	45	49
BRCA	TCGA-AR-A1AQ	HOXD11	SNP	Missense_Mutation	2	176973668	C	A	22	100
BRCA	TCGA-AR-A1AQ	DNAH7	SNP	Nonsense_Mutation	2	196749476	G	A	37	80
BRCA	TCGA-AR-A1AQ	RNF144A	SNP	Missense_Mutation	2	7179763	G	A	48	96
BRCA	TCGA-AR-A1AQ	PREX1	SNP	Missense_Mutation	20	47296244	C	T	27	97
BRCA	TCGA-AR-A1AQ	BACH1	SNP	Missense_Mutation	21	30699407	C	T	26	65
BRCA	TCGA-AR-A1AQ	GAB4	SNP	Silent	22	17468927	C	T	27	67
BRCA	TCGA-AR-A1AQ	ZBTB33	INS	Frame_Shift_Ins	23	119389284	-	TA	61	86
BRCA	TCGA-AR-A1AQ	FNIP1	SNP	Missense_Mutation	5	131046309	C	A	18	100
BRCA	TCGA-AR-A1AQ	SPDEF	SNP	Missense_Mutation	6	34506131	G	A	39	100
BRCA	TCGA-AR-A1AQ	APOBEC2	INS	Frame_Shift_Ins	6	41029366	-	CC	2	66
BRCA	TCGA-AR-A1AQ	CNPY3	SNP	Missense_Mutation	6	42906359	G	C	35	70
BRCA	TCGA-AR-A1AQ	CUL9	SNP	Missense_Mutation	6	43166502	C	T	27	54
BRCA	TCGA-AR-A1AQ	SEMA3A	SNP	Missense_Mutation	7	83823815	G	C	42	74
BRCA	TCGA-AR-A1AQ	KCNQ3	SNP	Silent	8	133142049	C	T	23	28
BRCA	TCGA-AR-A1AQ	LOC100288715	SNP	Missense_Mutation	9	34552057	G	A	47	50
BRCA	TCGA-AR-A1AR	ITGA10	SNP	Missense_Mutation	1	145530929	G	A	33	70
BRCA	TCGA-AR-A1AR	RPRD2	SNP	Missense_Mutation	1	150430016	G	T	33	96
BRCA	TCGA-AR-A1AR	FLG	SNP	Missense_Mutation	1	152286025	C	G	32	47
BRCA	TCGA-AR-A1AR	UCK2	SNP	Nonsense_Mutation	1	165875164	A	T	9	73
BRCA	TCGA-AR-A1AR	LHX4	SNP	Silent	1	180243387	C	T	27	58
BRCA	TCGA-AR-A1AR	CENPF	SNP	Missense_Mutation	1	214803928	C	A	21	80
BRCA	TCGA-AR-A1AR	GNPAT	SNP	Missense_Mutation	1	231403518	T	G	63	88
BRCA	TCGA-AR-A1AR	OR14K1	SNP	Missense_Mutation	1	247902857	G	C	33	51
BRCA	TCGA-AR-A1AR	C1orf94	SNP	Missense_Mutation	1	34663500	G	A	35	63
BRCA	TCGA-AR-A1AR	CTNNA3	INS	Frame_Shift_Ins	10	67726393	-	T	22	83
BRCA	TCGA-AR-A1AR	CTNNA3	SNP	Missense_Mutation	10	67726396	G	T	35	55
BRCA	TCGA-AR-A1AR	ENSG00000181950	SNP	Missense_Mutation	11	55234806	G	A	46	84
BRCA	TCGA-AR-A1AR	OR5D18	SNP	Missense_Mutation	11	55587494	C	T	24	83
BRCA	TCGA-AR-A1AR	LRRK2	SNP	Silent	12	40745430	T	G	53	51
BRCA	TCGA-AR-A1AR	KLRF1	SNP	Nonsense_Mutation	12	9985925	C	T	21	56
BRCA	TCGA-AR-A1AR	LOC390424	SNP	Nonsense_Mutation	13	107316046	A	T	1	72
BRCA	TCGA-AR-A1AR	TDRD9	SNP	Missense_Mutation	14	104484481	T	C	54	70
BRCA	TCGA-AR-A1AR	BRF1	SNP	Missense_Mutation	14	105683986	C	T	24	51
BRCA	TCGA-AR-A1AR	DHRS2	SNP	Missense_Mutation	14	24113663	A	G	6	75
BRCA	TCGA-AR-A1AR	MDGA2	SNP	Missense_Mutation	14	47324336	C	T	19	77
BRCA	TCGA-AR-A1AR	PPL	SNP	Silent	16	4947726	G	A	35	78
BRCA	TCGA-AR-A1AR	CALB2	SNP	Missense_Mutation	16	71417313	A	T	12	84
BRCA	TCGA-AR-A1AR	ENO3	SNP	Missense_Mutation	17	4857133	C	T	21	97
BRCA	TCGA-AR-A1AR	EVPL	SNP	Missense_Mutation	17	74017827	C	A	32	56
BRCA	TCGA-AR-A1AR	RTN2	SNP	Silent	19	45991899	A	T	9	51
BRCA	TCGA-AR-A1AR	ZNF415	SNP	Missense_Mutation	19	53612856	G	A	47	47
BRCA	TCGA-AR-A1AR	TTYH1	SNP	Silent	19	54937907	C	T	30	55
BRCA	TCGA-AR-A1AR	TNNT1	SNP	Missense_Mutation	19	55648534	A	C	6	50
BRCA	TCGA-AR-A1AR	MYO1F	SNP	Silent	19	8601262	G	A	39	35
BRCA	TCGA-AR-A1AR	BAZ2B	SNP	Splice_site	2	160181323	G	A	48	98
BRCA	TCGA-AR-A1AR	ZFAND2B	SNP	Silent	2	220072393	T	C	54	24
BRCA	TCGA-AR-A1AR	PTRHD1	SNP	Missense_Mutation	2	25016138	G	T	48	70
BRCA	TCGA-AR-A1AR	FSHR	SNP	Missense_Mutation	2	49190072	T	C	57	91
BRCA	TCGA-AR-A1AR	TTC31	SNP	Missense_Mutation	2	74719297	C	G	32	55
BRCA	TCGA-AR-A1AR	FER1L5	SNP	Missense_Mutation	2	97338872	T	G	51	77
BRCA	TCGA-AR-A1AR	AMOT	SNP	Missense_Mutation	23	112065720	G	T	48	60
BRCA	TCGA-AR-A1AR	SSX5	SNP	Missense_Mutation	23	48049613	G	T	43	42
BRCA	TCGA-AR-A1AR	TFE3	SNP	Missense_Mutation	23	48887874	T	A	58	75
BRCA	TCGA-AR-A1AR	RRAGB	DEL	Frame_Shift_Del	23	55757917	T	-	52	60
BRCA	TCGA-AR-A1AR	HDX	SNP	Missense_Mutation	23	83581199	T	G	56	77
BRCA	TCGA-AR-A1AR	COL6A6	SNP	Missense_Mutation	3	130300437	G	T	48	56
BRCA	TCGA-AR-A1AR	CLSTN2	SNP	Missense_Mutation	3	140122483	C	T	27	70
BRCA	TCGA-AR-A1AR	KNG1	SNP	Missense_Mutation	3	186450435	T	C	52	62
BRCA	TCGA-AR-A1AR	KIAA0226	SNP	Missense_Mutation	3	197444928	C	T	19	99
BRCA	TCGA-AR-A1AR	CMTM7	SNP	Silent	3	32490993	C	T	21	62
BRCA	TCGA-AR-A1AR	ITIH4	SNP	Missense_Mutation	3	52860882	C	A	28	66
BRCA	TCGA-AR-A1AR	CLDND1	SNP	Splice_Site	3	98217028	C	T	32	61
BRCA	TCGA-AR-A1AR	CLCN3	SNP	Splice_Site	4	170557240	G	T	44	92
BRCA	TCGA-AR-A1AR	PCDHA13	SNP	Silent	5	140263908	C	T	27	48
BRCA	TCGA-AR-A1AR	NPR3	SNP	Missense_Mutation	5	32724819	C	T	27	81
BRCA	TCGA-AR-A1AR	SLC22A16	SNP	Missense_Mutation	6	110778014	G	A	40	53
BRCA	TCGA-AR-A1AR	TINAG	SNP	Nonsense_Mutation	6	54254622	G	T	33	85
BRCA	TCGA-AR-A1AR	SNRNP48	SNP	Missense_Mutation	6	7609080	C	T	29	62
BRCA	TCGA-AR-A1AR	PTPRZ1	SNP	Silent	7	121624110	G	A	36	61
BRCA	TCGA-AR-A1AR	TAX1BP1	SNP	Missense_Mutation	7	27833979	A	T	4	47
BRCA	TCGA-AR-A1AR	LRSAM1	SNP	Missense_Mutation	9	130263396	G	C	33	79
BRCA	TCGA-AR-A1AS	SPRR2B	SNP	Nonsense_Mutation	1	153043220	G	T	42	46
BRCA	TCGA-AR-A1AS	SPTA1	DEL	In_Frame_Del	1	158605731	CCC	-	30	65
BRCA	TCGA-AR-A1AS	SPTA1	DEL	In_Frame_Del	1	158605735	GTGTTCAAC	-	36	51
BRCA	TCGA-AR-A1AS	C1orf111	SNP	Silent	1	162343895	G	A	45	66
BRCA	TCGA-AR-A1AS	GLRX2	SNP	Splice_site	1	193065756	C	G	29	58
BRCA	TCGA-AR-A1AS	ZC3H11A	SNP	Missense_Mutation	1	203819082	G	A	33	79
BRCA	TCGA-AR-A1AS	RYR2	SNP	Missense_Mutation	1	237632461	G	T	33	93
BRCA	TCGA-AR-A1AS	LOC729806	DEL	Frame_Shift_Del	1	247353721	T	-	60	47
BRCA	TCGA-AR-A1AS	WRAP73	SNP	Missense_Mutation	1	3566551	C	T	31	80
BRCA	TCGA-AR-A1AS	SLC6A9	SNP	Missense_Mutation	1	44468079	C	A	29	100
BRCA	TCGA-AR-A1AS	FUOM	SNP	Silent	10	135170746	C	T	29	43
BRCA	TCGA-AR-A1AS	GATA3	SNP	Silent	10	8100440	C	G	24	48
BRCA	TCGA-AR-A1AS	MYOF	DEL	Frame_Shift_Del	10	95137179	TTTG	-	52	75
BRCA	TCGA-AR-A1AS	MUC15	SNP	Silent	11	26582735	C	T	29	49
BRCA	TCGA-AR-A1AS	CNGA4	SNP	Missense_Mutation	11	6261794	G	A	44	72
BRCA	TCGA-AR-A1AS	KRAS	SNP	Missense_Mutation	12	25398284	C	A	18	99
BRCA	TCGA-AR-A1AS	IRAK3	SNP	Silent	12	66638269	A	C	5	50
BRCA	TCGA-AR-A1AS	POTEG	SNP	Missense_Mutation	14	19553451	C	T	30	54
BRCA	TCGA-AR-A1AS	LRFN5	SNP	Silent	14	42360996	G	A	33	64
BRCA	TCGA-AR-A1AS	LARP6	SNP	Missense_Mutation	15	71128708	C	T	27	79
BRCA	TCGA-AR-A1AS	LCAT	SNP	Missense_Mutation	16	67977911	A	T	3	84
BRCA	TCGA-AR-A1AS	MAP2K4	SNP	Missense_Mutation	17	12016634	C	T	32	94
BRCA	TCGA-AR-A1AS	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-AR-A1AS	EIF4A3	SNP	Missense_Mutation	17	78110120	G	C	33	88
BRCA	TCGA-AR-A1AS	CARD14	SNP	Nonsense_Mutation	17	78156478	C	T	31	83
BRCA	TCGA-AR-A1AS	MAPK4	SNP	Missense_Mutation	18	48255652	C	T	27	85
BRCA	TCGA-AR-A1AS	TXNDC2	SNP	Missense_Mutation	18	9887689	C	T	22	53
BRCA	TCGA-AR-A1AS	TOMM40	SNP	Silent	19	45406420	C	T	31	46
BRCA	TCGA-AR-A1AS	TTN	SNP	Missense_Mutation	2	179427821	C	T	29	89
BRCA	TCGA-AR-A1AS	COL6A3	DEL	Splice_Site	2	238243265	TTACTT	-	56	62
BRCA	TCGA-AR-A1AS	BCL11A	SNP	Missense_Mutation	2	60687616	C	T	19	100
BRCA	TCGA-AR-A1AS	EYA2	SNP	Silent	20	45801427	G	A	46	42
BRCA	TCGA-AR-A1AS	HMGN5	SNP	Missense_Mutation	23	80370668	T	G	62	55
BRCA	TCGA-AR-A1AS	PIK3CA	SNP	Missense_Mutation	3	178936092	A	C	11	90
BRCA	TCGA-AR-A1AS	RBM6	SNP	Missense_Mutation	3	50095901	A	G	16	67
BRCA	TCGA-AR-A1AS	ZAR1	SNP	Silent	4	48492353	G	A	39	50
BRCA	TCGA-AR-A1AS	PCDHA4	SNP	Silent	5	140187112	C	T	28	60
BRCA	TCGA-AR-A1AS	ATP10B	SNP	Missense_Mutation	5	160097495	C	T	17	59
BRCA	TCGA-AR-A1AS	GOLPH3	SNP	Missense_Mutation	5	32143957	T	C	49	59
BRCA	TCGA-AR-A1AS	PLXNA4	SNP	Missense_Mutation	7	131848926	C	T	27	100
BRCA	TCGA-AR-A1AS	EPHB6	SNP	Silent	7	142568630	G	A	45	67
BRCA	TCGA-AR-A1AS	GIMAP4	SNP	Missense_Mutation	7	150269546	G	A	33	86
BRCA	TCGA-AR-A1AT	EPS15	SNP	Missense_Mutation	1	51864825	C	A	18	85
BRCA	TCGA-AR-A1AT	ZNF239	SNP	Missense_Mutation	10	44052156	G	A	37	42
BRCA	TCGA-AR-A1AT	DNTT	SNP	Silent	10	98092128	C	T	18	64
BRCA	TCGA-AR-A1AT	MLL	SNP	Silent	11	118354912	G	A	39	39
BRCA	TCGA-AR-A1AT	SPTY2D1	SNP	Missense_Mutation	11	18637556	T	C	58	90
BRCA	TCGA-AR-A1AT	CDC42BPG	SNP	Missense_Mutation	11	64591956	T	G	54	51
BRCA	TCGA-AR-A1AT	PUS7L	SNP	Missense_Mutation	12	44130339	G	A	47	79
BRCA	TCGA-AR-A1AT	TDRD9	SNP	Missense_Mutation	14	104492006	C	T	26	52
BRCA	TCGA-AR-A1AT	SERPINA1	DEL	Frame_Shift_Del	14	94847276	T	-	60	43
BRCA	TCGA-AR-A1AT	PLCB2	SNP	Missense_Mutation	15	40590117	G	A	43	61
BRCA	TCGA-AR-A1AT	FAM214A	SNP	Missense_Mutation	15	52901580	G	C	46	56
BRCA	TCGA-AR-A1AT	SKOR1	SNP	Missense_Mutation	15	68118648	G	A	38	95
BRCA	TCGA-AR-A1AT	TNRC6A	SNP	Silent	16	24801088	C	T	17	83
BRCA	TCGA-AR-A1AT	MAPK3	SNP	Silent	16	30129736	G	A	39	30
BRCA	TCGA-AR-A1AT	ZNF296	SNP	Missense_Mutation	19	45574978	C	A	23	58
BRCA	TCGA-AR-A1AT	MUC16	SNP	Silent	19	9085518	A	G	7	52
BRCA	TCGA-AR-A1AT	TTN	SNP	Missense_Mutation	2	179592332	G	C	36	69
BRCA	TCGA-AR-A1AT	STARD7	SNP	Missense_Mutation	2	96861224	C	G	28	54
BRCA	TCGA-AR-A1AT	RUNX1	DEL	Frame_Shift_Del	21	36259157	G	-	35	69
BRCA	TCGA-AR-A1AT	RFPL1	SNP	Missense_Mutation	22	29837624	G	A	39	47
BRCA	TCGA-AR-A1AT	MYH9	DEL	Frame_Shift_Del	22	36695005	C	-	28	54
BRCA	TCGA-AR-A1AT	RXFP3	SNP	Missense_Mutation	5	33937522	C	T	27	58
BRCA	TCGA-AR-A1AT	FOXK1	SNP	Missense_Mutation	7	4780597	C	T	23	98
BRCA	TCGA-AR-A1AT	GOT1L1	SNP	Silent	8	37792595	G	A	45	60
BRCA	TCGA-AR-A1AT	SNX16	DEL	Splice_Site	8	82751846	C	-	17	85
BRCA	TCGA-AR-A1AT	MAMDC2	SNP	Silent	9	72727930	T	C	50	47
BRCA	TCGA-AR-A1AU	E2F2	SNP	Silent	1	23847527	C	T	30	78
BRCA	TCGA-AR-A1AU	MYOM3	SNP	Missense_Mutation	1	24390618	G	A	38	69
BRCA	TCGA-AR-A1AU	PDCD11	SNP	Missense_Mutation	10	105200238	A	T	7	57
BRCA	TCGA-AR-A1AU	ZNF511	SNP	Missense_Mutation	10	135125374	G	A	40	51
BRCA	TCGA-AR-A1AU	RPP30	SNP	Silent	10	92656100	C	T	19	56
BRCA	TCGA-AR-A1AU	SLC25A22	SNP	Silent	11	793561	G	A	40	51
BRCA	TCGA-AR-A1AU	COL2A1	SNP	Splice_Site	12	48370883	A	C	6	90
BRCA	TCGA-AR-A1AU	TUBGCP5	SNP	Missense_Mutation	15	22866738	G	A	48	54
BRCA	TCGA-AR-A1AU	ENSG00000234719	SNP	Missense_Mutation	16	12021477	G	A	38	51
BRCA	TCGA-AR-A1AU	PLA2G15	SNP	Missense_Mutation	16	68293055	A	G	2	91
BRCA	TCGA-AR-A1AU	MAP2K4	INS	Frame_Shift_Ins	17	12032570	-	TC	52	90
BRCA	TCGA-AR-A1AU	LLGL1	SNP	Silent	17	18145296	C	T	27	8
BRCA	TCGA-AR-A1AU	UNC45B	SNP	Missense_Mutation	17	33504550	G	A	41	60
BRCA	TCGA-AR-A1AU	GPS2	SNP	Nonsense_Mutation	17	7217447	G	A	47	79
BRCA	TCGA-AR-A1AU	NUMBL	SNP	Missense_Mutation	19	41183152	G	C	43	17
BRCA	TCGA-AR-A1AU	SLC9C1	SNP	Missense_Mutation	3	111901058	G	C	45	66
BRCA	TCGA-AR-A1AU	FBXO40	SNP	Missense_Mutation	3	121342188	G	A	33	53
BRCA	TCGA-AR-A1AU	CACNA2D3	SNP	Missense_Mutation	3	55107522	T	C	59	87
BRCA	TCGA-AR-A1AU	PCDH12	SNP	Missense_Mutation	5	141334577	T	G	60	79
BRCA	TCGA-AR-A1AU	MLLT4	SNP	Nonsense_Mutation	6	168289974	T	G	61	86
BRCA	TCGA-AR-A1AU	NAPRT1	SNP	Silent	8	144657391	T	G	59	34
BRCA	TCGA-AR-A1AV	FAM40A	SNP	Missense_Mutation	1	110586328	G	A	37	100
BRCA	TCGA-AR-A1AV	INSRR	SNP	Missense_Mutation	1	156813013	T	C	50	85
BRCA	TCGA-AR-A1AV	EIF3I	DEL	Frame_Shift_Del	1	32694368	GG	-	39	70
BRCA	TCGA-AR-A1AV	MIER1	DEL	In_Frame_Del	1	67447566	AAG	-	1	63
BRCA	TCGA-AR-A1AV	PARD3	SNP	Missense_Mutation	10	34620159	G	A	37	85
BRCA	TCGA-AR-A1AV	GATA3	DEL	Frame_Shift_Del	10	8115973	CCGC	-	18	100
BRCA	TCGA-AR-A1AV	EHD1	SNP	Silent	11	64622048	C	T	27	30
BRCA	TCGA-AR-A1AV	ANKLE2	SNP	Missense_Mutation	12	133312082	T	C	56	50
BRCA	TCGA-AR-A1AV	SLC2A3	SNP	Missense_Mutation	12	8083112	G	C	34	89
BRCA	TCGA-AR-A1AV	HTR2A	SNP	Missense_Mutation	13	47469795	C	T	19	52
BRCA	TCGA-AR-A1AV	WDR20	SNP	Missense_Mutation	14	102675094	G	A	41	100
BRCA	TCGA-AR-A1AV	NEMF	SNP	Missense_Mutation	14	50298943	G	A	47	70
BRCA	TCGA-AR-A1AV	DPP8	SNP	Missense_Mutation	15	65792988	T	G	53	81
BRCA	TCGA-AR-A1AV	MEFV	SNP	Missense_Mutation	16	3299561	C	T	27	51
BRCA	TCGA-AR-A1AV	CPNE2	SNP	Missense_Mutation	16	57180088	T	C	51	92
BRCA	TCGA-AR-A1AV	NUTF2	SNP	Missense_Mutation	16	67902441	C	T	27	87
BRCA	TCGA-AR-A1AV	SEPT4	SNP	Missense_Mutation	17	56603076	C	T	23	95
BRCA	TCGA-AR-A1AV	TAF4B	SNP	Missense_Mutation	18	23915146	C	G	32	72
BRCA	TCGA-AR-A1AV	ANKLE1	SNP	Silent	19	17394278	G	T	39	43
BRCA	TCGA-AR-A1AV	LOC100130518	SNP	Missense_Mutation	19	22487564	G	A	45	49
BRCA	TCGA-AR-A1AV	B3GNT7	SNP	Missense_Mutation	2	232262638	G	T	46	47
BRCA	TCGA-AR-A1AV	SIRPG	SNP	Missense_Mutation	20	1616960	G	A	39	49
BRCA	TCGA-AR-A1AV	ADAMTS1	SNP	Missense_Mutation	21	28212320	C	T	23	97
BRCA	TCGA-AR-A1AV	GRIK1	SNP	Missense_Mutation	21	31023532	T	C	60	88
BRCA	TCGA-AR-A1AV	MED15	SNP	Missense_Mutation	22	20937198	C	T	19	73
BRCA	TCGA-AR-A1AV	IL12A	DEL	Frame_Shift_Del	3	159711616	TGATG	-	63	46
BRCA	TCGA-AR-A1AV	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AR-A1AV	RBMS3	SNP	Silent	3	29781333	C	T	19	49
BRCA	TCGA-AR-A1AV	PDZRN3	SNP	Missense_Mutation	3	73432563	C	T	30	100
BRCA	TCGA-AR-A1AV	SETD5	SNP	Missense_Mutation	3	9490166	C	A	25	98
BRCA	TCGA-AR-A1AV	LRBA	SNP	Missense_Mutation	4	151356833	A	T	1	57
BRCA	TCGA-AR-A1AV	DCHS2	SNP	Missense_Mutation	4	155157976	G	A	41	60
BRCA	TCGA-AR-A1AV	PDGFRA	SNP	Missense_Mutation	4	55152033	G	A	38	100
BRCA	TCGA-AR-A1AV	PRKG2	SNP	Nonsense_Mutation	4	82125820	C	A	29	89
BRCA	TCGA-AR-A1AV	C5orf62	SNP	Silent	5	150158455	C	T	30	52
BRCA	TCGA-AR-A1AV	VCAN	SNP	Nonsense_Mutation	5	82817939	G	T	33	87
BRCA	TCGA-AR-A1AV	CDC40	SNP	Silent	6	110550072	C	T	32	61
BRCA	TCGA-AR-A1AV	TRDN	SNP	Missense_Mutation	6	123576256	C	T	32	58
BRCA	TCGA-AR-A1AV	TULP4	SNP	Silent	6	158834165	C	T	31	45
BRCA	TCGA-AR-A1AV	HIST1H1B	SNP	Missense_Mutation	6	27835099	G	A	38	86
BRCA	TCGA-AR-A1AV	BACH2	SNP	Missense_Mutation	6	90660239	G	A	38	96
BRCA	TCGA-AR-A1AV	MAGI2	DEL	Frame_Shift_Del	7	78150872	CTTGGAGTGG	-	20	67
BRCA	TCGA-AR-A1AV	EPB49	SNP	Missense_Mutation	8	21931298	A	T	12	62
BRCA	TCGA-AR-A1AV	DNAJB5	SNP	Nonsense_Mutation	9	34990767	T	G	61	72
BRCA	TCGA-AR-A1AW	MPZL1	SNP	Nonsense_Mutation	1	167741689	C	T	21	63
BRCA	TCGA-AR-A1AW	RASAL2	SNP	Missense_Mutation	1	178411925	G	A	40	100
BRCA	TCGA-AR-A1AW	SOCS4	SNP	Missense_Mutation	14	55510028	C	A	32	97
BRCA	TCGA-AR-A1AW	BCMO1	SNP	Nonsense_Mutation	16	81303769	T	A	49	56
BRCA	TCGA-AR-A1AW	NF1	SNP	Missense_Mutation	17	29586058	G	C	33	85
BRCA	TCGA-AR-A1AW	TP53	SNP	Missense_Mutation	17	7577121	G	A	38	65
BRCA	TCGA-AR-A1AW	LILRA1	SNP	Missense_Mutation	19	55107152	C	T	26	44
BRCA	TCGA-AR-A1AW	MUC16	SNP	Silent	19	9007506	G	A	43	51
BRCA	TCGA-AR-A1AW	GNAS	SNP	Missense_Mutation	20	57485019	A	G	8	79
BRCA	TCGA-AR-A1AW	PHF6	SNP	Missense_Mutation	23	133559244	A	T	1	85
BRCA	TCGA-AR-A1AW	MAGEA11	SNP	Silent	23	148798316	C	G	22	56
BRCA	TCGA-AR-A1AW	PCDH19	SNP	Missense_Mutation	23	99662740	G	A	38	54
BRCA	TCGA-AR-A1AW	SYTL4	SNP	Missense_Mutation	23	99936233	G	A	39	54
BRCA	TCGA-AR-A1AW	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AR-A1AW	TRANK1	SNP	Missense_Mutation	3	36879889	C	A	25	85
BRCA	TCGA-AR-A1AW	BRPF1	SNP	Missense_Mutation	3	9783065	A	C	11	93
BRCA	TCGA-AR-A1AW	ELOVL5	SNP	Splice_Site	6	53156612	G	A	35	69
BRCA	TCGA-AR-A1AX	KDM4A	SNP	Missense_Mutation	1	44137307	C	T	24	67
BRCA	TCGA-AR-A1AX	CARD16	SNP	Missense_Mutation	11	104915136	G	A	40	42
BRCA	TCGA-AR-A1AX	SYNE2	SNP	Missense_Mutation	14	64557671	A	G	4	49
BRCA	TCGA-AR-A1AX	LOC100289074	SNP	Missense_Mutation	17	81083247	G	A	37	51
BRCA	TCGA-AR-A1AX	SLC1A6	SNP	Missense_Mutation	19	15063812	A	G	8	85
BRCA	TCGA-AR-A1AX	ZNF565	SNP	Missense_Mutation	19	36673496	G	A	37	60
BRCA	TCGA-AR-A1AX	PRKD2	SNP	Missense_Mutation	19	47204110	T	C	54	62
BRCA	TCGA-AR-A1AX	RGPD3	SNP	Silent	2	107041128	G	A	34	72
BRCA	TCGA-AR-A1AX	PHACTR3	SNP	Missense_Mutation	20	58322833	G	A	39	50
BRCA	TCGA-AR-A1AX	MAGIX	SNP	Silent	23	49021218	A	T	8	33
BRCA	TCGA-AR-A1AX	PDCD6IP	SNP	Missense_Mutation	3	33855109	C	T	32	99
BRCA	TCGA-AR-A1AX	APC	SNP	Missense_Mutation	5	112177283	G	A	33	84
BRCA	TCGA-AR-A1AX	ARHGAP26	SNP	Missense_Mutation	5	142150475	T	C	54	78
BRCA	TCGA-AR-A1AX	HIATL2	SNP	Splice_Site	9	99711835	A	T	6	76
BRCA	TCGA-AR-A1AY	LELP1	SNP	Missense_Mutation	1	153177464	G	A	46	64
BRCA	TCGA-AR-A1AY	TOMM40L	SNP	Missense_Mutation	1	161198536	C	G	17	84
BRCA	TCGA-AR-A1AY	DUSP27	SNP	Missense_Mutation	1	167095632	G	A	37	50
BRCA	TCGA-AR-A1AY	TOR1AIP2	SNP	Missense_Mutation	1	179816677	C	A	30	59
BRCA	TCGA-AR-A1AY	ZNF683	SNP	Missense_Mutation	1	26694191	G	T	33	70
BRCA	TCGA-AR-A1AY	SERINC2	SNP	Missense_Mutation	1	31898637	G	A	39	95
BRCA	TCGA-AR-A1AY	ABCD3	SNP	Missense_Mutation	1	94953135	C	T	29	100
BRCA	TCGA-AR-A1AY	PTPRE	SNP	Splice_Site	10	129839137	A	T	7	71
BRCA	TCGA-AR-A1AY	VCL	SNP	Nonsense_Mutation	10	75854054	C	T	31	80
BRCA	TCGA-AR-A1AY	TRPC6	SNP	Missense_Mutation	11	101353892	C	A	22	87
BRCA	TCGA-AR-A1AY	TECTA	SNP	Missense_Mutation	11	121028626	C	G	23	97
BRCA	TCGA-AR-A1AY	DRAM1	SNP	Silent	12	102315029	T	C	59	50
BRCA	TCGA-AR-A1AY	NUAK1	SNP	Missense_Mutation	12	106466578	A	C	9	79
BRCA	TCGA-AR-A1AY	PTPRO	SNP	Silent	12	15661533	G	T	45	49
BRCA	TCGA-AR-A1AY	ATP2B1	SNP	Silent	12	90024403	G	A	34	65
BRCA	TCGA-AR-A1AY	YLPM1	SNP	Missense_Mutation	14	75264973	T	G	52	54
BRCA	TCGA-AR-A1AY	CYLD	SNP	Missense_Mutation	16	50816338	G	A	44	98
BRCA	TCGA-AR-A1AY	TP53	DEL	Frame_Shift_Del	17	7579321	CA	-	29	46
BRCA	TCGA-AR-A1AY	SLC25A35	DEL	Frame_Shift_Del	17	8198073	TTGG	-	52	85
BRCA	TCGA-AR-A1AY	LAMA3	SNP	Missense_Mutation	18	21451420	G	A	40	61
BRCA	TCGA-AR-A1AY	FHOD3	SNP	Missense_Mutation	18	34289239	G	T	42	53
BRCA	TCGA-AR-A1AY	ZNF730	SNP	Missense_Mutation	19	23329065	C	T	23	49
BRCA	TCGA-AR-A1AY	C19orf71	SNP	Missense_Mutation	19	3543315	C	T	19	49
BRCA	TCGA-AR-A1AY	CBLC	SNP	Missense_Mutation	19	45303662	C	G	30	52
BRCA	TCGA-AR-A1AY	RPL13A	SNP	Missense_Mutation	19	49995067	G	C	44	73
BRCA	TCGA-AR-A1AY	VIT	SNP	Splice_site	2	36994428	G	A	43	77
BRCA	TCGA-AR-A1AY	REG1B	SNP	Nonsense_Mutation	2	79312688	G	T	48	58
BRCA	TCGA-AR-A1AY	BAGE2	SNP	Missense_Mutation	21	11098693	G	A	38	51
BRCA	TCGA-AR-A1AY	KCNE2	SNP	Missense_Mutation	21	35742917	A	T	14	69
BRCA	TCGA-AR-A1AY	B3GALT5	SNP	Missense_Mutation	21	41032610	G	C	39	58
BRCA	TCGA-AR-A1AY	OSBP2	SNP	Missense_Mutation	22	31289855	G	A	39	100
BRCA	TCGA-AR-A1AY	CARD10	SNP	Missense_Mutation	22	37892477	G	A	43	58
BRCA	TCGA-AR-A1AY	ARSF	SNP	Missense_Mutation	23	3019142	G	A	46	58
BRCA	TCGA-AR-A1AY	CXorf30	SNP	Nonsense_Mutation	23	36366361	G	A	47	76
BRCA	TCGA-AR-A1AY	ZNF157	SNP	Missense_Mutation	23	47272787	G	C	33	87
BRCA	TCGA-AR-A1AY	NAA50	SNP	Missense_Mutation	3	113440684	C	T	27	87
BRCA	TCGA-AR-A1AY	MYLK	SNP	Silent	3	123456340	G	A	40	35
BRCA	TCGA-AR-A1AY	EEFSEC	SNP	Missense_Mutation	3	128060108	C	A	30	52
BRCA	TCGA-AR-A1AY	AADAC	SNP	Missense_Mutation	3	151532014	C	T	26	63
BRCA	TCGA-AR-A1AY	SEMA3F	SNP	Silent	3	50211374	C	T	27	36
BRCA	TCGA-AR-A1AY	FEZF2	SNP	Missense_Mutation	3	62356997	C	A	23	100
BRCA	TCGA-AR-A1AY	ZNF654	SNP	Missense_Mutation	3	88188575	C	T	20	72
BRCA	TCGA-AR-A1AY	AFP	SNP	Missense_Mutation	4	74319576	T	A	55	71
BRCA	TCGA-AR-A1AY	AFF1	DEL	Frame_Shift_Del	4	88052306	AG	-	7	56
BRCA	TCGA-AR-A1AY	PCDHA8	SNP	Silent	5	140222367	C	T	19	51
BRCA	TCGA-AR-A1AY	RBM22	SNP	Silent	5	150076368	C	T	32	77
BRCA	TCGA-AR-A1AY	KIF4B	SNP	Missense_Mutation	5	154395359	G	A	39	67
BRCA	TCGA-AR-A1AY	C6orf170	SNP	Nonsense_Mutation	6	121615779	G	A	45	61
BRCA	TCGA-AR-A1AY	BRPF3	SNP	Missense_Mutation	6	36178029	G	A	41	100
BRCA	TCGA-AR-A1AY	SYNCRIP	SNP	Silent	6	86351074	C	T	32	82
BRCA	TCGA-AR-A1AY	UBN2	SNP	Missense_Mutation	7	138946092	G	A	33	83
BRCA	TCGA-AR-A1AY	SGCZ	SNP	Silent	8	13965683	G	T	43	49
BRCA	TCGA-AR-A1AY	C9orf96	SNP	Silent	9	136266928	G	A	45	60
BRCA	TCGA-AR-A1AY	FAM205A	DEL	Frame_Shift_Del	9	34724646	C	-	30	49
BRCA	TCGA-AR-A24H	AKNAD1	SNP	Missense_Mutation	1	109395170	A	T	8	56
BRCA	TCGA-AR-A24H	IVL	SNP	Missense_Mutation	1	152882851	T	G	55	44
BRCA	TCGA-AR-A24H	ANGPTL1	SNP	Missense_Mutation	1	178834198	C	A	32	71
BRCA	TCGA-AR-A24H	KIAA1614	SNP	Silent	1	180886055	G	T	47	46
BRCA	TCGA-AR-A24H	IVNS1ABP	SNP	Missense_Mutation	1	185270573	C	G	32	75
BRCA	TCGA-AR-A24H	HMCN1	SNP	Missense_Mutation	1	186036993	G	A	36	54
BRCA	TCGA-AR-A24H	DDX59	SNP	Silent	1	200613627	A	G	4	57
BRCA	TCGA-AR-A24H	CHI3L1	SNP	Missense_Mutation	1	203154430	C	T	29	71
BRCA	TCGA-AR-A24H	PLEKHA6	SNP	Missense_Mutation	1	204230534	T	A	54	74
BRCA	TCGA-AR-A24H	C4BPA	DEL	Frame_Shift_Del	1	207287417	TGGTGCTCCTTCTCATTTTGGTGTCCAGGCAATTG	-	63	48
BRCA	TCGA-AR-A24H	CR2	SNP	Silent	1	207648368	T	A	54	45
BRCA	TCGA-AR-A24H	EPB41	SNP	Nonsense_Mutation	1	29314146	T	A	63	58
BRCA	TCGA-AR-A24H	PIK3R3	SNP	Missense_Mutation	1	46511674	G	A	46	100
BRCA	TCGA-AR-A24H	PAX2	SNP	Missense_Mutation	10	102584408	G	A	40	94
BRCA	TCGA-AR-A24H	CSGALNACT2	SNP	Missense_Mutation	10	43650986	A	G	1	78
BRCA	TCGA-AR-A24H	WDFY4	SNP	Nonsense_Mutation	10	49988074	G	A	42	91
BRCA	TCGA-AR-A24H	RHOBTB1	DEL	Frame_Shift_Del	10	62648195	AAGGGCCTGGCTGGACTGAAGCGTCCATCCTG	-	1	90
BRCA	TCGA-AR-A24H	KCNMA1	SNP	Silent	10	78674713	G	A	41	71
BRCA	TCGA-AR-A24H	MUC5B	SNP	Missense_Mutation	11	1268164	A	G	8	61
BRCA	TCGA-AR-A24H	MUC5B	SNP	Missense_Mutation	11	1268543	T	C	50	37
BRCA	TCGA-AR-A24H	MUC5B	SNP	Silent	11	1268553	C	G	21	77
BRCA	TCGA-AR-A24H	NAV2	DEL	Frame_Shift_Del	11	19864448	TCCGAAGAACAGA	-	58	60
BRCA	TCGA-AR-A24H	ARFGAP2	SNP	Missense_Mutation	11	47198382	G	A	44	55
BRCA	TCGA-AR-A24H	OR5B3	SNP	Silent	11	58170265	A	G	13	48
BRCA	TCGA-AR-A24H	DHCR7	SNP	Silent	11	71155930	G	C	39	35
BRCA	TCGA-AR-A24H	P4HA3	SNP	Missense_Mutation	11	74000171	C	T	30	73
BRCA	TCGA-AR-A24H	ANO4	SNP	Missense_Mutation	12	101430911	G	T	46	97
BRCA	TCGA-AR-A24H	GALNT9	SNP	Missense_Mutation	12	132905608	T	G	54	84
BRCA	TCGA-AR-A24H	GALNT9	SNP	Nonsense_Mutation	12	132905684	C	A	30	70
BRCA	TCGA-AR-A24H	CACNA1C	SNP	Splice_Site	12	2711019	G	T	33	98
BRCA	TCGA-AR-A24H	SLC38A4	SNP	Missense_Mutation	12	47172298	C	G	17	67
BRCA	TCGA-AR-A24H	ITGA5	SNP	Missense_Mutation	12	54803355	A	G	10	57
BRCA	TCGA-AR-A24H	SLC39A5	SNP	Missense_Mutation	12	56625219	C	A	20	70
BRCA	TCGA-AR-A24H	CNOT2	SNP	Missense_Mutation	12	70726585	G	A	41	85
BRCA	TCGA-AR-A24H	FGD6	SNP	Missense_Mutation	12	95501370	C	T	23	85
BRCA	TCGA-AR-A24H	PCDH17	INS	Splice_site	13	58299427	-	A	45	61
BRCA	TCGA-AR-A24H	DYNC1H1	SNP	Missense_Mutation	14	102478724	T	G	59	93
BRCA	TCGA-AR-A24H	AMN	SNP	Silent	14	103395190	G	A	41	75
BRCA	TCGA-AR-A24H	C14orf119	SNP	Missense_Mutation	14	23566911	C	A	32	75
BRCA	TCGA-AR-A24H	MYH7	SNP	Missense_Mutation	14	23891449	G	A	44	98
BRCA	TCGA-AR-A24H	NYNRIN	SNP	Missense_Mutation	14	24877309	C	G	22	52
BRCA	TCGA-AR-A24H	AKAP6	SNP	Missense_Mutation	14	33147618	G	C	35	48
BRCA	TCGA-AR-A24H	SIX1	SNP	Missense_Mutation	14	61113081	C	T	23	51
BRCA	TCGA-AR-A24H	ADAMTS17	SNP	Missense_Mutation	15	100636566	C	T	22	93
BRCA	TCGA-AR-A24H	RYR3	SNP	Missense_Mutation	15	34064213	A	T	2	70
BRCA	TCGA-AR-A24H	NOP10	SNP	Missense_Mutation	15	34635251	G	C	40	53
BRCA	TCGA-AR-A24H	EHD4	SNP	Silent	15	42235331	G	A	35	71
BRCA	TCGA-AR-A24H	SYT17	SNP	Missense_Mutation	16	19195047	G	A	37	98
BRCA	TCGA-AR-A24H	GTF3C1	SNP	Missense_Mutation	16	27483171	C	A	28	92
BRCA	TCGA-AR-A24H	NUPR1	SNP	Missense_Mutation	16	28549435	C	T	25	51
BRCA	TCGA-AR-A24H	SLC7A6	SNP	Missense_Mutation	16	68330554	T	A	60	89
BRCA	TCGA-AR-A24H	CDH1	DEL	Frame_Shift_Del	16	68863622	TGCACCAACCCTCA	-	63	49
BRCA	TCGA-AR-A24H	CLEC3A	SNP	Missense_Mutation	16	78064682	G	A	45	99
BRCA	TCGA-AR-A24H	DYNLRB2	SNP	Silent	16	80577175	A	C	7	55
BRCA	TCGA-AR-A24H	MYH8	SNP	Silent	17	10301949	G	A	40	47
BRCA	TCGA-AR-A24H	ZNF830	SNP	Missense_Mutation	17	33288605	C	A	26	57
BRCA	TCGA-AR-A24H	HNF1B	SNP	Splice_site	17	36099431	G	A	40	100
BRCA	TCGA-AR-A24H	STARD3	SNP	Silent	17	37809976	C	T	32	64
BRCA	TCGA-AR-A24H	SLC25A39	SNP	Missense_Mutation	17	42398003	C	A	26	77
BRCA	TCGA-AR-A24H	ITGB3	SNP	Missense_Mutation	17	45376772	A	G	5	56
BRCA	TCGA-AR-A24H	FAM117A	DEL	In_Frame_Del	17	47788904	CAGGAC	-	29	83
BRCA	TCGA-AR-A24H	WFIKKN2	SNP	Silent	17	48913406	G	A	38	26
BRCA	TCGA-AR-A24H	LIPE	SNP	Missense_Mutation	19	42907078	C	G	30	58
BRCA	TCGA-AR-A24H	TEX101	SNP	Missense_Mutation	19	43920373	A	T	2	49
BRCA	TCGA-AR-A24H	SNRNP70	SNP	Splice_Site	19	49610881	G	C	35	90
BRCA	TCGA-AR-A24H	SIGLEC9	SNP	Missense_Mutation	19	51628890	C	A	18	49
BRCA	TCGA-AR-A24H	PTBP1	SNP	Missense_Mutation	19	808581	A	G	9	89
BRCA	TCGA-AR-A24H	ZSWIM2	SNP	Missense_Mutation	2	187693353	T	A	56	53
BRCA	TCGA-AR-A24H	PUM2	SNP	Missense_Mutation	2	20512037	G	A	35	100
BRCA	TCGA-AR-A24H	APOB	DNP	Missense_Mutation	2	21251331	AT	GG	8	90
BRCA	TCGA-AR-A24H	BIRC6	SNP	Missense_Mutation	2	32656007	A	G	10	92
BRCA	TCGA-AR-A24H	MSH2	SNP	Missense_Mutation	2	47702380	A	C	1	67
BRCA	TCGA-AR-A24H	PNPT1	SNP	Missense_Mutation	2	55920943	A	C	14	51
BRCA	TCGA-AR-A24H	DGUOK	SNP	Missense_Mutation	2	74177737	G	C	45	99
BRCA	TCGA-AR-A24H	RBM12	SNP	Nonsense_Mutation	20	34241980	G	C	45	81
BRCA	TCGA-AR-A24H	SOGA1	SNP	Missense_Mutation	20	35415036	G	A	34	64
BRCA	TCGA-AR-A24H	RASSF2	SNP	Silent	20	4773210	C	T	24	55
BRCA	TCGA-AR-A24H	ZFP64	SNP	Missense_Mutation	20	50769649	T	G	59	79
BRCA	TCGA-AR-A24H	TRPM2	SNP	Silent	21	45789136	G	C	45	58
BRCA	TCGA-AR-A24H	TAF7L	SNP	Missense_Mutation	23	100531448	C	T	29	49
BRCA	TCGA-AR-A24H	GPRASP2	SNP	Missense_Mutation	23	101971743	A	T	16	52
BRCA	TCGA-AR-A24H	DKC1	SNP	Missense_Mutation	23	153993196	T	G	49	54
BRCA	TCGA-AR-A24H	ASMTL	SNP	Missense_Mutation	23	1558027	C	T	23	62
BRCA	TCGA-AR-A24H	CDKL5	SNP	Missense_Mutation	23	18664154	G	C	33	52
BRCA	TCGA-AR-A24H	CXorf21	SNP	Missense_Mutation	23	30578016	C	T	21	79
BRCA	TCGA-AR-A24H	ZNF41	SNP	Missense_Mutation	23	47308257	G	C	46	57
BRCA	TCGA-AR-A24H	HDAC6	SNP	Missense_Mutation	23	48672886	G	T	44	30
BRCA	TCGA-AR-A24H	ABCB7	SNP	Missense_Mutation	23	74289263	C	A	32	59
BRCA	TCGA-AR-A24H	DIAPH2	SNP	Missense_Mutation	23	96603145	G	C	45	99
BRCA	TCGA-AR-A24H	MECOM	DEL	Frame_Shift_Del	3	168819968	GCACTGAA	-	42	87
BRCA	TCGA-AR-A24H	LAMP3	INS	Frame_Shift_Ins	3	182841959	-	C	5	53
BRCA	TCGA-AR-A24H	YEATS2	SNP	Missense_Mutation	3	183524710	C	A	25	70
BRCA	TCGA-AR-A24H	PIGZ	SNP	Missense_Mutation	3	196675280	G	C	33	71
BRCA	TCGA-AR-A24H	TRANK1	SNP	Missense_Mutation	3	36899136	T	C	59	44
BRCA	TCGA-AR-A24H	QARS	SNP	Missense_Mutation	3	49136104	G	A	38	100
BRCA	TCGA-AR-A24H	VPRBP	SNP	Missense_Mutation	3	51440606	T	A	50	88
BRCA	TCGA-AR-A24H	NAT8L	SNP	Missense_Mutation	4	2065586	C	T	32	100
BRCA	TCGA-AR-A24H	ZBTB49	SNP	Missense_Mutation	4	4322987	A	T	10	75
BRCA	TCGA-AR-A24H	WDFY3	SNP	Silent	4	85663022	C	T	29	66
BRCA	TCGA-AR-A24H	GRID2	SNP	Missense_Mutation	4	94436426	C	T	27	100
BRCA	TCGA-AR-A24H	SNCAIP	SNP	Silent	5	121780266	T	A	63	52
BRCA	TCGA-AR-A24H	PCDHA12	SNP	Silent	5	140256083	C	T	19	60
BRCA	TCGA-AR-A24H	PCDHGA12	SNP	Missense_Mutation	5	140811837	A	C	14	59
BRCA	TCGA-AR-A24H	MED7	SNP	Missense_Mutation	5	156565934	G	C	33	100
BRCA	TCGA-AR-A24H	C5orf45	SNP	Missense_Mutation	5	179280249	G	C	41	53
BRCA	TCGA-AR-A24H	C5orf42	INS	In_Frame_Ins	5	37182935	-	TCTTTA	42	91
BRCA	TCGA-AR-A24H	CDK19	SNP	Silent	6	110942346	G	C	38	52
BRCA	TCGA-AR-A24H	REV3L	SNP	Missense_Mutation	6	111694984	G	C	33	96
BRCA	TCGA-AR-A24H	RFX6	SNP	Missense_Mutation	6	117249959	C	G	17	47
BRCA	TCGA-AR-A24H	SYNE1	SNP	Missense_Mutation	6	152464831	A	C	16	77
BRCA	TCGA-AR-A24H	RPS6KA2	SNP	Missense_Mutation	6	166831734	G	T	36	52
BRCA	TCGA-AR-A24H	C6orf70	SNP	Silent	6	170176590	T	A	62	29
BRCA	TCGA-AR-A24H	ABHD16A	SNP	Missense_Mutation	6	31660923	C	G	24	57
BRCA	TCGA-AR-A24H	MAD2L1BP	SNP	Missense_Mutation	6	43607982	G	C	33	50
BRCA	TCGA-AR-A24H	PTCHD4	INS	Frame_Shift_Ins	6	47846834	-	T	28	74
BRCA	TCGA-AR-A24H	ACTL6B	SNP	Nonsense_Mutation	7	100245120	T	A	62	88
BRCA	TCGA-AR-A24H	TES	SNP	Missense_Mutation	7	115889294	G	A	45	95
BRCA	TCGA-AR-A24H	ZNF786	SNP	Missense_Mutation	7	148768278	C	G	32	60
BRCA	TCGA-AR-A24H	ELFN1	DEL	Frame_Shift_Del	7	1784270	TGGCGGCCGCCACCCTGCTGCACGC	-	59	66
BRCA	TCGA-AR-A24H	RAPGEF5	DEL	In_Frame_Del	7	22190031	GTCCGCCAG	-	48	48
BRCA	TCGA-AR-A24H	CHN2	SNP	Missense_Mutation	7	29433303	C	G	17	91
BRCA	TCGA-AR-A24H	TBX20	SNP	Missense_Mutation	7	35242254	G	C	44	66
BRCA	TCGA-AR-A24H	EGFR	SNP	Silent	7	55219021	C	T	28	54
BRCA	TCGA-AR-A24H	YWHAG	SNP	Silent	7	75959386	C	T	19	47
BRCA	TCGA-AR-A24H	ABCB1	SNP	Splice_site	7	87168661	C	T	22	100
BRCA	TCGA-AR-A24H	ZFPM2	SNP	Missense_Mutation	8	106814376	G	C	48	100
BRCA	TCGA-AR-A24H	SLC30A8	DEL	Frame_Shift_Del	8	118183309	AGCTTATTTT	-	11	63
BRCA	TCGA-AR-A24H	SAMD12	SNP	Missense_Mutation	8	119391733	C	G	24	45
BRCA	TCGA-AR-A24H	FER1L6	SNP	Silent	8	125074185	C	T	17	66
BRCA	TCGA-AR-A24H	PRKDC	SNP	Nonsense_Mutation	8	48839765	G	T	45	68
BRCA	TCGA-AR-A24H	CHD7	SNP	Silent	8	61773585	G	C	41	63
BRCA	TCGA-AR-A24H	MCMDC2	SNP	Silent	8	67793181	A	G	5	58
BRCA	TCGA-AR-A24H	OR13C9	SNP	Missense_Mutation	9	107379675	C	T	32	61
BRCA	TCGA-AR-A24H	TXNDC8	SNP	Missense_Mutation	9	113066787	C	A	32	72
BRCA	TCGA-AR-A24H	SVEP1	DEL	In_Frame_Del	9	113208280	CAGAAACTT	-	21	98
BRCA	TCGA-AR-A24H	RNF208	SNP	Missense_Mutation	9	140114992	C	T	22	75
BRCA	TCGA-AR-A24H	NPR2	SNP	Splice_site	9	35801760	G	A	47	75
BRCA	TCGA-AR-A24H	OR13J1	SNP	Missense_Mutation	9	35870175	G	C	43	73
BRCA	TCGA-AR-A24H	FAM22F	SNP	Silent	9	97082784	C	G	25	59
BRCA	TCGA-AR-A24K	VCL	SNP	Missense_Mutation	10	75834570	A	G	4	90
BRCA	TCGA-AR-A24K	STAB2	SNP	Missense_Mutation	12	104100711	G	A	39	96
BRCA	TCGA-AR-A24K	TMTC2	SNP	Missense_Mutation	12	83444707	G	A	40	97
BRCA	TCGA-AR-A24K	CCER1	SNP	Missense_Mutation	12	91347459	C	T	22	48
BRCA	TCGA-AR-A24K	GOLGA8J	SNP	Silent	15	32689491	T	C	56	44
BRCA	TCGA-AR-A24K	IGDCC3	SNP	Missense_Mutation	15	65622726	G	A	46	56
BRCA	TCGA-AR-A24K	PML	INS	Frame_Shift_Ins	15	74327557	-	A	22	56
BRCA	TCGA-AR-A24K	NCOR1	SNP	Splice_Site	17	15973477	A	G	14	86
BRCA	TCGA-AR-A24K	ABCA8	SNP	Missense_Mutation	17	66920927	G	T	35	58
BRCA	TCGA-AR-A24K	TP53	INS	Frame_Shift_Ins	17	7579360	-	AA	41	61
BRCA	TCGA-AR-A24K	SPDYE4	SNP	Missense_Mutation	17	8660619	C	T	19	50
BRCA	TCGA-AR-A24K	MPV17L2	SNP	Silent	19	18304729	G	A	48	45
BRCA	TCGA-AR-A24K	CHST8	SNP	Missense_Mutation	19	34263642	G	A	41	97
BRCA	TCGA-AR-A24K	EEF2	SNP	Missense_Mutation	19	3983150	G	C	39	81
BRCA	TCGA-AR-A24K	CYP2S1	SNP	Silent	19	41704416	A	T	15	44
BRCA	TCGA-AR-A24K	VN1R4	SNP	Missense_Mutation	19	53770069	C	T	17	23
BRCA	TCGA-AR-A24K	LIPT1	SNP	Silent	2	99778927	C	T	31	50
BRCA	TCGA-AR-A24K	RRBP1	SNP	Missense_Mutation	20	17641006	C	T	21	63
BRCA	TCGA-AR-A24K	OFD1	SNP	Silent	23	13774756	G	T	45	55
BRCA	TCGA-AR-A24K	PIK3CA	SNP	Missense_Mutation	3	178921567	A	G	10	89
BRCA	TCGA-AR-A24K	KCNH8	SNP	Missense_Mutation	3	19295241	A	G	2	78
BRCA	TCGA-AR-A24K	PRKCD	SNP	Missense_Mutation	3	53223092	T	A	57	90
BRCA	TCGA-AR-A24K	EGF	SNP	Missense_Mutation	4	110925680	A	G	9	57
BRCA	TCGA-AR-A24K	MET	SNP	Missense_Mutation	7	116399515	G	A	48	71
BRCA	TCGA-AR-A24K	LRGUK	SNP	Silent	7	133842882	A	G	13	48
BRCA	TCGA-AR-A24K	TRPS1	SNP	Missense_Mutation	8	116616565	C	T	31	95
BRCA	TCGA-AR-A24K	PI15	SNP	Missense_Mutation	8	75756324	C	T	19	55
BRCA	TCGA-AR-A24K	SETX	SNP	Missense_Mutation	9	135172419	T	C	52	78
BRCA	TCGA-AR-A24L	CD53	SNP	Missense_Mutation	1	111435055	C	G	19	98
BRCA	TCGA-AR-A24L	PTCHD2	SNP	Missense_Mutation	1	11591069	G	A	47	83
BRCA	TCGA-AR-A24L	TTF2	SNP	Missense_Mutation	1	117618034	G	C	33	52
BRCA	TCGA-AR-A24L	CD5L	SNP	Silent	1	157805923	C	A	21	53
BRCA	TCGA-AR-A24L	DCAF6	SNP	Nonstop_Mutation	1	168044671	T	A	49	61
BRCA	TCGA-AR-A24L	PADI2	SNP	Silent	1	17395659	G	T	42	59
BRCA	TCGA-AR-A24L	ARID4B	DEL	Frame_Shift_Del	1	235346022	TCTTAGATTCC	-	50	45
BRCA	TCGA-AR-A24L	KNDC1	SNP	Missense_Mutation	10	135020480	T	A	54	49
BRCA	TCGA-AR-A24L	DYNC2H1	DEL	Frame_Shift_Del	11	103116068	TT	-	56	92
BRCA	TCGA-AR-A24L	DYNC2H1	DEL	Frame_Shift_Del	11	103116072	TC	-	50	56
BRCA	TCGA-AR-A24L	OR10S1	SNP	Silent	11	123848195	G	T	45	55
BRCA	TCGA-AR-A24L	MYO7A	SNP	Splice_Site	11	76903324	G	T	44	97
BRCA	TCGA-AR-A24L	TRIM66	SNP	Missense_Mutation	11	8670021	C	G	29	88
BRCA	TCGA-AR-A24L	PIWIL4	SNP	Missense_Mutation	11	94331003	G	C	43	87
BRCA	TCGA-AR-A24L	ALX1	SNP	Missense_Mutation	12	85680747	C	A	17	72
BRCA	TCGA-AR-A24L	SERPINA12	SNP	Silent	14	94953679	C	G	25	47
BRCA	TCGA-AR-A24L	CHRNB4	SNP	Missense_Mutation	15	78927917	A	G	6	55
BRCA	TCGA-AR-A24L	HAPLN3	SNP	Silent	15	89424727	G	A	38	41
BRCA	TCGA-AR-A24L	CCDC78	SNP	Missense_Mutation	16	775286	G	A	43	58
BRCA	TCGA-AR-A24L	MED24	SNP	Silent	17	38176104	C	T	24	66
BRCA	TCGA-AR-A24L	TCF4	SNP	Missense_Mutation	18	52899822	G	C	35	91
BRCA	TCGA-AR-A24L	UNC13A	SNP	Missense_Mutation	19	17728543	A	G	12	84
BRCA	TCGA-AR-A24L	CADM4	DEL	Frame_Shift_Del	19	44129369	CTCATTC	-	20	55
BRCA	TCGA-AR-A24L	NMS	SNP	Nonsense_Mutation	2	101087011	C	T	17	72
BRCA	TCGA-AR-A24L	APOB	SNP	Missense_Mutation	2	21245741	A	C	9	49
BRCA	TCGA-AR-A24L	PLEK	SNP	Missense_Mutation	2	68613653	G	T	42	100
BRCA	TCGA-AR-A24L	PDYN	SNP	Silent	20	1961218	G	C	45	60
BRCA	TCGA-AR-A24L	AHCY	SNP	Missense_Mutation	20	32868859	G	A	39	99
BRCA	TCGA-AR-A24L	RALGAPB	SNP	Missense_Mutation	20	37177413	C	G	22	99
BRCA	TCGA-AR-A24L	LAMP5	SNP	Missense_Mutation	20	9498735	C	G	22	98
BRCA	TCGA-AR-A24L	MN1	SNP	Missense_Mutation	22	28195783	G	C	33	81
BRCA	TCGA-AR-A24L	KIAA1210	SNP	Missense_Mutation	23	118221786	G	T	41	52
BRCA	TCGA-AR-A24L	CCDC80	SNP	Silent	3	112357487	C	T	28	46
BRCA	TCGA-AR-A24L	ETV5	SNP	Missense_Mutation	3	185783746	G	A	41	65
BRCA	TCGA-AR-A24L	ULK4	SNP	Silent	3	41942265	G	A	33	63
BRCA	TCGA-AR-A24L	NFKB1	SNP	Missense_Mutation	4	103501694	G	A	34	97
BRCA	TCGA-AR-A24L	FGA	SNP	Missense_Mutation	4	155507138	T	G	56	55
BRCA	TCGA-AR-A24L	TRIM60	SNP	Missense_Mutation	4	165961691	A	G	9	55
BRCA	TCGA-AR-A24L	THOC3	SNP	Silent	5	175387038	G	A	40	57
BRCA	TCGA-AR-A24L	LMAN2	DEL	In_Frame_Del	5	176764146	CGCCGGTGC	-	31	86
BRCA	TCGA-AR-A24L	ZNF76	SNP	Missense_Mutation	6	35262260	G	T	44	55
BRCA	TCGA-AR-A24L	PKHD1L1	SNP	Silent	8	110464392	C	A	21	51
BRCA	TCGA-AR-A24L	TNFRSF11B	SNP	Missense_Mutation	8	119936866	G	C	46	59
BRCA	TCGA-AR-A24L	CD72	SNP	Missense_Mutation	9	35612972	C	G	30	67
BRCA	TCGA-AR-A24M	CROCC	SNP	Missense_Mutation	1	17273292	C	T	19	72
BRCA	TCGA-AR-A24M	CRB1	SNP	Silent	1	197390446	C	A	29	49
BRCA	TCGA-AR-A24M	PLD5	SNP	Missense_Mutation	1	242383361	A	G	11	82
BRCA	TCGA-AR-A24M	UBXN11	SNP	Missense_Mutation	1	26608885	C	T	23	45
BRCA	TCGA-AR-A24M	MARCKSL1	SNP	Silent	1	32800612	G	A	39	42
BRCA	TCGA-AR-A24M	PLK3	SNP	Missense_Mutation	1	45270401	C	A	28	62
BRCA	TCGA-AR-A24M	MRE11A	SNP	Missense_Mutation	11	94209462	G	T	45	97
BRCA	TCGA-AR-A24M	MBNL2	SNP	Missense_Mutation	13	97999169	T	A	63	93
BRCA	TCGA-AR-A24M	TTC6	SNP	Silent	14	38277943	T	C	49	49
BRCA	TCGA-AR-A24M	NTHL1	SNP	Silent	16	2093638	C	T	27	34
BRCA	TCGA-AR-A24M	ABCA3	SNP	Silent	16	2345722	C	T	27	42
BRCA	TCGA-AR-A24M	PHLDB3	SNP	Silent	19	44008076	A	G	7	30
BRCA	TCGA-AR-A24M	SNTG2	SNP	Splice_Site	2	1094038	G	T	35	88
BRCA	TCGA-AR-A24M	GOLGB1	SNP	Silent	3	121416508	C	T	21	37
BRCA	TCGA-AR-A24M	SLC25A36	SNP	Missense_Mutation	3	140675496	A	G	5	61
BRCA	TCGA-AR-A24M	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-AR-A24M	TRIM2	SNP	Silent	4	154191510	A	G	7	64
BRCA	TCGA-AR-A24M	UTP3	SNP	Missense_Mutation	4	71555017	C	T	28	68
BRCA	TCGA-AR-A24M	ZNF622	SNP	Silent	5	16463793	G	A	40	8
BRCA	TCGA-AR-A24M	PIK3R1	SNP	Missense_Mutation	5	67590467	A	T	9	92
BRCA	TCGA-AR-A24M	SLC35B2	SNP	Missense_Mutation	6	44224110	A	T	7	68
BRCA	TCGA-AR-A24N	HIPK1	SNP	Missense_Mutation	1	114516067	G	A	37	75
BRCA	TCGA-AR-A24N	TP53BP2	SNP	Missense_Mutation	1	223971901	G	C	41	51
BRCA	TCGA-AR-A24N	NEGR1	SNP	Missense_Mutation	1	72241932	C	T	30	96
BRCA	TCGA-AR-A24N	MUC5B	SNP	Silent	11	1251806	G	A	38	46
BRCA	TCGA-AR-A24N	UBQLN3	SNP	Missense_Mutation	11	5530467	G	A	43	58
BRCA	TCGA-AR-A24N	SLC22A9	SNP	Splice_Site	11	63141114	A	T	7	80
BRCA	TCGA-AR-A24N	C11orf24	SNP	Missense_Mutation	11	68031210	C	G	21	54
BRCA	TCGA-AR-A24N	UBC	INS	Frame_Shift_Ins	12	125396630	-	G	63	87
BRCA	TCGA-AR-A24N	RECQL	SNP	Silent	12	21639494	C	T	29	58
BRCA	TCGA-AR-A24N	KCNA5	SNP	Missense_Mutation	12	5154181	C	A	21	81
BRCA	TCGA-AR-A24N	SAMD4A	SNP	Missense_Mutation	14	55169153	G	T	42	99
BRCA	TCGA-AR-A24N	VRK1	SNP	Missense_Mutation	14	97299833	G	A	34	58
BRCA	TCGA-AR-A24N	UBN1	SNP	Missense_Mutation	16	4924371	C	T	30	44
BRCA	TCGA-AR-A24N	STUB1	SNP	Silent	16	731865	C	T	25	69
BRCA	TCGA-AR-A24N	NPIPL2	SNP	Missense_Mutation	16	74419288	T	C	50	50
BRCA	TCGA-AR-A24N	CWC25	SNP	Missense_Mutation	17	36977158	C	T	19	67
BRCA	TCGA-AR-A24N	FOXK2	SNP	Missense_Mutation	17	80525932	C	T	28	100
BRCA	TCGA-AR-A24N	ZNF429	SNP	Missense_Mutation	19	21719514	A	G	3	44
BRCA	TCGA-AR-A24N	PRRG2	SNP	Missense_Mutation	19	50091757	G	A	40	52
BRCA	TCGA-AR-A24N	SHANK1	SNP	Missense_Mutation	19	51165718	C	T	23	79
BRCA	TCGA-AR-A24N	ZNF548	SNP	Silent	19	57908526	C	T	22	45
BRCA	TCGA-AR-A24N	TGM2	SNP	Missense_Mutation	20	36776418	C	T	19	53
BRCA	TCGA-AR-A24N	NFATC2	SNP	Silent	20	50048992	C	T	23	39
BRCA	TCGA-AR-A24N	HNRNPH2	SNP	Nonsense_Mutation	23	100668309	C	T	29	61
BRCA	TCGA-AR-A24N	USP53	SNP	Silent	4	120193097	C	T	29	71
BRCA	TCGA-AR-A24N	PRR16	SNP	Silent	5	120022380	G	A	41	65
BRCA	TCGA-AR-A24N	PCDHGA11	SNP	Missense_Mutation	5	140802650	C	T	27	52
BRCA	TCGA-AR-A24N	MLL3	SNP	Nonsense_Mutation	7	151860728	G	A	45	95
BRCA	TCGA-AR-A24N	KIAA0196	SNP	Silent	8	126056088	C	T	19	49
BRCA	TCGA-AR-A24N	KCNK9	SNP	Missense_Mutation	8	140714982	T	C	57	85
BRCA	TCGA-AR-A24N	ZNF623	SNP	Missense_Mutation	8	144732952	T	C	54	54
BRCA	TCGA-AR-A24N	CACNA1B	SNP	Missense_Mutation	9	140865931	G	A	38	74
BRCA	TCGA-AR-A24O	SLC30A10	SNP	Missense_Mutation	1	220091665	G	A	39	85
BRCA	TCGA-AR-A24O	APPL2	SNP	Missense_Mutation	12	105605050	T	C	52	86
BRCA	TCGA-AR-A24O	SENP1	SNP	Missense_Mutation	12	48482684	C	T	25	67
BRCA	TCGA-AR-A24O	EFNB2	SNP	Missense_Mutation	13	107145608	G	A	39	100
BRCA	TCGA-AR-A24O	TUBGCP3	SNP	Missense_Mutation	13	113212589	C	T	19	41
BRCA	TCGA-AR-A24O	FOXA1	SNP	Missense_Mutation	14	38061463	T	C	51	85
BRCA	TCGA-AR-A24O	ZNF75A	SNP	Missense_Mutation	16	3363109	G	A	41	53
BRCA	TCGA-AR-A24O	DOCK10	SNP	Silent	2	225661753	G	C	43	48
BRCA	TCGA-AR-A24O	CHD6	SNP	Splice_Site	20	40065975	C	G	32	78
BRCA	TCGA-AR-A24O	NHS	SNP	Missense_Mutation	23	17705913	C	T	23	73
BRCA	TCGA-AR-A24O	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-AR-A24O	PCYT1A	SNP	Missense_Mutation	3	195968901	A	C	4	88
BRCA	TCGA-AR-A24O	FGF18	SNP	Silent	5	170883788	C	A	30	59
BRCA	TCGA-AR-A24O	PKHD1L1	SNP	Silent	8	110454342	T	C	49	48
BRCA	TCGA-AR-A24O	KCNQ3	SNP	Missense_Mutation	8	133142164	G	A	40	65
BRCA	TCGA-AR-A24P	VPS13D	SNP	Missense_Mutation	1	12387893	G	C	38	98
BRCA	TCGA-AR-A24P	PRAMEF4	SNP	Missense_Mutation	1	12939485	C	A	28	49
BRCA	TCGA-AR-A24P	CCDC19	SNP	Missense_Mutation	1	159857798	C	T	25	67
BRCA	TCGA-AR-A24P	IVNS1ABP	SNP	Silent	1	185276771	A	T	15	47
BRCA	TCGA-AR-A24P	ZDHHC6	SNP	Missense_Mutation	10	114192251	C	T	20	60
BRCA	TCGA-AR-A24P	WDFY4	SNP	Missense_Mutation	10	50013339	G	C	42	61
BRCA	TCGA-AR-A24P	PPFIBP2	SNP	Silent	11	7672145	G	T	47	69
BRCA	TCGA-AR-A24P	KDM5A	DEL	Splice_site	12	420229	CTCTGAAAAACCAAAGTAGATTCTCACAATTTG	-	20	59
BRCA	TCGA-AR-A24P	MYH6	SNP	Missense_Mutation	14	23855661	G	A	40	62
BRCA	TCGA-AR-A24P	ZC3H14	SNP	Missense_Mutation	14	89039040	G	A	37	87
BRCA	TCGA-AR-A24P	SEMA7A	SNP	Silent	15	74707257	G	A	37	38
BRCA	TCGA-AR-A24P	CBFB	INS	Frame_Shift_Ins	16	67070577	-	T	36	92
BRCA	TCGA-AR-A24P	TP53	SNP	Missense_Mutation	17	7577580	T	C	57	55
BRCA	TCGA-AR-A24P	GTF3C3	SNP	Splice_Site	2	197662520	C	T	18	79
BRCA	TCGA-AR-A24P	MGAT4A	DEL	Frame_Shift_Del	2	99256673	TCTG	-	62	91
BRCA	TCGA-AR-A24P	CXCR3	SNP	Missense_Mutation	23	70836775	C	T	27	60
BRCA	TCGA-AR-A24P	HNRPDL	SNP	Nonsense_Mutation	4	83350516	G	A	47	65
BRCA	TCGA-AR-A24P	FAM81B	SNP	Missense_Mutation	5	94772583	G	A	38	48
BRCA	TCGA-AR-A24P	RHOBTB2	SNP	Missense_Mutation	8	22865082	G	A	37	74
BRCA	TCGA-AR-A24P	SEMA4D	SNP	Missense_Mutation	9	92003919	G	A	41	95
BRCA	TCGA-AR-A24P	DMRT3	SNP	Missense_Mutation	9	990838	G	A	40	67
BRCA	TCGA-AR-A24Q	UBE4B	INS	Frame_Shift_Ins	1	10177641	-	A	41	99
BRCA	TCGA-AR-A24Q	NOTCH2	SNP	Missense_Mutation	1	120506414	C	A	17	63
BRCA	TCGA-AR-A24Q	PRAMEF1	SNP	Missense_Mutation	1	12855745	C	G	28	48
BRCA	TCGA-AR-A24Q	FLG	SNP	Missense_Mutation	1	152279942	G	C	46	58
BRCA	TCGA-AR-A24Q	MIB2	DEL	Frame_Shift_Del	1	1563469	TCCTCACGGAGGTGCCAAACATCGATGTT	-	58	84
BRCA	TCGA-AR-A24Q	SPTA1	SNP	Missense_Mutation	1	158612286	C	T	31	58
BRCA	TCGA-AR-A24Q	DNAJC16	SNP	Splice_Site	1	15892576	G	T	34	90
BRCA	TCGA-AR-A24Q	LY9	SNP	Missense_Mutation	1	160769623	A	C	8	58
BRCA	TCGA-AR-A24Q	C1orf112	SNP	Missense_Mutation	1	169798585	G	A	45	70
BRCA	TCGA-AR-A24Q	PAPPA2	SNP	Splice_Site	1	176769269	G	C	44	82
BRCA	TCGA-AR-A24Q	RGS1	SNP	Silent	1	192545958	C	G	21	45
BRCA	TCGA-AR-A24Q	CFH	SNP	Nonsense_Mutation	1	196684806	G	T	45	77
BRCA	TCGA-AR-A24Q	KCNH1	SNP	Silent	1	210856854	C	T	19	13
BRCA	TCGA-AR-A24Q	EPHB2	SNP	Missense_Mutation	1	23237037	A	G	7	87
BRCA	TCGA-AR-A24Q	WDR64	SNP	Missense_Mutation	1	241959652	G	T	35	47
BRCA	TCGA-AR-A24Q	AHCTF1	SNP	Missense_Mutation	1	247024360	G	C	44	70
BRCA	TCGA-AR-A24Q	KLF17	SNP	Silent	1	44595381	C	G	24	57
BRCA	TCGA-AR-A24Q	LRP8	SNP	Missense_Mutation	1	53723024	G	C	46	71
BRCA	TCGA-AR-A24Q	SLC44A5	SNP	Splice_Site	1	75693410	C	T	20	99
BRCA	TCGA-AR-A24Q	BARHL2	SNP	Missense_Mutation	1	91180220	G	T	41	82
BRCA	TCGA-AR-A24Q	ABLIM1	SNP	Splice_Site	10	116199016	C	T	17	61
BRCA	TCGA-AR-A24Q	GLRX3	SNP	Missense_Mutation	10	131964903	A	G	16	88
BRCA	TCGA-AR-A24Q	PCDH15	SNP	Missense_Mutation	10	55826581	G	A	35	63
BRCA	TCGA-AR-A24Q	PRKCQ	SNP	Missense_Mutation	10	6504320	C	T	25	100
BRCA	TCGA-AR-A24Q	PTEN	SNP	Missense_Mutation	10	89692883	C	G	29	96
BRCA	TCGA-AR-A24Q	EXPH5	SNP	Silent	11	108380564	C	A	30	55
BRCA	TCGA-AR-A24Q	MUC2	SNP	Missense_Mutation	11	1097877	G	T	41	42
BRCA	TCGA-AR-A24Q	GALNTL4	SNP	Silent	11	11454295	C	G	29	60
BRCA	TCGA-AR-A24Q	BRSK2	SNP	Missense_Mutation	11	1463799	C	A	24	79
BRCA	TCGA-AR-A24Q	QSER1	SNP	Silent	11	32955888	G	A	45	70
BRCA	TCGA-AR-A24Q	RAG1	SNP	Silent	11	36596585	C	T	32	64
BRCA	TCGA-AR-A24Q	FAT3	SNP	Missense_Mutation	11	92577403	G	T	45	100
BRCA	TCGA-AR-A24Q	KDM4E	SNP	Silent	11	94760221	G	A	45	50
BRCA	TCGA-AR-A24Q	CACNA2D4	SNP	Missense_Mutation	12	2024051	G	T	44	74
BRCA	TCGA-AR-A24Q	KERA	SNP	Missense_Mutation	12	91449429	T	A	50	51
BRCA	TCGA-AR-A24Q	STARD13	SNP	Silent	13	33739512	A	G	8	74
BRCA	TCGA-AR-A24Q	NBEA	SNP	Missense_Mutation	13	36229093	A	T	16	72
BRCA	TCGA-AR-A24Q	GPR132	SNP	Missense_Mutation	14	105517707	G	A	42	63
BRCA	TCGA-AR-A24Q	BCL2L2	SNP	Splice_Site	14	23778024	G	A	35	78
BRCA	TCGA-AR-A24Q	EFS	SNP	Silent	14	23829243	G	A	40	48
BRCA	TCGA-AR-A24Q	SLC35F4	SNP	Missense_Mutation	14	58056019	T	G	64	91
BRCA	TCGA-AR-A24Q	GABRG3	SNP	Missense_Mutation	15	27725885	G	C	45	84
BRCA	TCGA-AR-A24Q	MAP1A	SNP	Missense_Mutation	15	43818417	G	T	33	54
BRCA	TCGA-AR-A24Q	SPATA5L1	SNP	Silent	15	45707816	C	T	25	78
BRCA	TCGA-AR-A24Q	FBN1	SNP	Missense_Mutation	15	48736765	A	G	16	93
BRCA	TCGA-AR-A24Q	HCN4	SNP	Missense_Mutation	15	73615583	C	A	24	53
BRCA	TCGA-AR-A24Q	ZNF592	SNP	Silent	15	85326113	T	A	63	48
BRCA	TCGA-AR-A24Q	LOC81691	SNP	Nonsense_Mutation	16	20826304	C	T	25	50
BRCA	TCGA-AR-A24Q	CNTNAP4	SNP	Missense_Mutation	16	76482725	T	G	51	53
BRCA	TCGA-AR-A24Q	CNTNAP4	SNP	Silent	16	76555164	A	G	15	57
BRCA	TCGA-AR-A24Q	MBTPS1	SNP	Silent	16	84101990	T	A	53	37
BRCA	TCGA-AR-A24Q	ATP2C2	SNP	Silent	16	84488552	C	A	21	59
BRCA	TCGA-AR-A24Q	MYH2	SNP	Silent	17	10424654	C	T	29	66
BRCA	TCGA-AR-A24Q	FBXW10	SNP	Missense_Mutation	17	18681814	C	G	17	50
BRCA	TCGA-AR-A24Q	TEFM	SNP	Silent	17	29226268	T	C	57	49
BRCA	TCGA-AR-A24Q	SLFN14	SNP	Missense_Mutation	17	33884375	G	C	42	73
BRCA	TCGA-AR-A24Q	TTLL6	SNP	Missense_Mutation	17	46882267	C	T	31	64
BRCA	TCGA-AR-A24Q	SSTR2	SNP	Silent	17	71165749	T	A	56	58
BRCA	TCGA-AR-A24Q	USH1G	SNP	Silent	17	72916079	G	A	43	54
BRCA	TCGA-AR-A24Q	RECQL5	SNP	Missense_Mutation	17	73625808	G	A	44	59
BRCA	TCGA-AR-A24Q	ZBTB4	SNP	Nonsense_Mutation	17	7366443	C	A	32	93
BRCA	TCGA-AR-A24Q	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-AR-A24Q	ENPP7	SNP	Silent	17	77708865	C	T	32	64
BRCA	TCGA-AR-A24Q	ACTG1	DEL	In_Frame_Del	17	79478494	GGCGTGGGGGAGGGCGTAGCCCTCGTAGATGGG	-	47	62
BRCA	TCGA-AR-A24Q	SIRT7	SNP	Missense_Mutation	17	79870419	G	C	37	65
BRCA	TCGA-AR-A24Q	CD226	SNP	Nonsense_Mutation	18	67613972	G	C	45	66
BRCA	TCGA-AR-A24Q	CACNA1A	SNP	Missense_Mutation	19	13397499	G	A	40	48
BRCA	TCGA-AR-A24Q	CACNA1A	SNP	Missense_Mutation	19	13476202	A	C	3	90
BRCA	TCGA-AR-A24Q	USHBP1	SNP	Silent	19	17370192	G	A	34	71
BRCA	TCGA-AR-A24Q	PSG1	SNP	Missense_Mutation	19	43373177	G	T	43	59
BRCA	TCGA-AR-A24Q	PLAUR	SNP	Missense_Mutation	19	44169580	G	C	34	53
BRCA	TCGA-AR-A24Q	ZNF541	SNP	Missense_Mutation	19	48058965	C	G	20	62
BRCA	TCGA-AR-A24Q	ZNF610	SNP	Silent	19	52869627	C	A	21	38
BRCA	TCGA-AR-A24Q	ZNF808	SNP	Missense_Mutation	19	53057483	G	T	33	35
BRCA	TCGA-AR-A24Q	KIR3DL2	SNP	Splice_site	19	55377364	A	T	11	55
BRCA	TCGA-AR-A24Q	SAFB	SNP	Missense_Mutation	19	5654079	A	G	1	60
BRCA	TCGA-AR-A24Q	MFSD9	SNP	Silent	2	103335116	C	A	23	22
BRCA	TCGA-AR-A24Q	PTPN4	SNP	Missense_Mutation	2	120640129	G	A	33	93
BRCA	TCGA-AR-A24Q	PKP4	SNP	Missense_Mutation	2	159526302	G	C	33	53
BRCA	TCGA-AR-A24Q	SCN2A	SNP	Missense_Mutation	2	166201118	G	C	33	64
BRCA	TCGA-AR-A24Q	SCN7A	SNP	Missense_Mutation	2	167285716	C	T	17	54
BRCA	TCGA-AR-A24Q	TTN	SNP	Missense_Mutation	2	179566921	G	A	40	98
BRCA	TCGA-AR-A24Q	ORMDL1	SNP	Missense_Mutation	2	190647150	G	C	33	61
BRCA	TCGA-AR-A24Q	DNAH7	SNP	Missense_Mutation	2	196837175	C	T	20	77
BRCA	TCGA-AR-A24Q	CASP8	SNP	Missense_Mutation	2	202149565	C	T	28	76
BRCA	TCGA-AR-A24Q	PLCD4	SNP	Missense_Mutation	2	219496970	G	A	41	53
BRCA	TCGA-AR-A24Q	CXCR7	SNP	Silent	2	237489606	C	T	30	49
BRCA	TCGA-AR-A24Q	C2orf42	SNP	Missense_Mutation	2	70408913	C	G	24	93
BRCA	TCGA-AR-A24Q	TIA1	SNP	Missense_Mutation	2	70442526	C	G	29	96
BRCA	TCGA-AR-A24Q	DQX1	SNP	Missense_Mutation	2	74750598	G	T	44	56
BRCA	TCGA-AR-A24Q	NCAPH	SNP	Missense_Mutation	2	97025913	A	G	9	72
BRCA	TCGA-AR-A24Q	BPIFA2	SNP	Silent	20	31765968	C	T	29	55
BRCA	TCGA-AR-A24Q	TOP1	SNP	Silent	20	39751880	C	A	22	77
BRCA	TCGA-AR-A24Q	CHD6	SNP	Silent	20	40043952	C	T	32	64
BRCA	TCGA-AR-A24Q	WFDC5	SNP	Missense_Mutation	20	43739046	G	T	42	40
BRCA	TCGA-AR-A24Q	CDS2	SNP	Missense_Mutation	20	5163085	C	G	32	69
BRCA	TCGA-AR-A24Q	PRIC285	SNP	Missense_Mutation	20	62195294	C	T	25	54
BRCA	TCGA-AR-A24Q	RUNX1	SNP	Silent	21	36164864	G	A	39	45
BRCA	TCGA-AR-A24Q	SYN3	DEL	In_Frame_Del	22	32923944	GCCCCAGCTGGGCTT	-	42	72
BRCA	TCGA-AR-A24Q	PKDREJ	SNP	Missense_Mutation	22	46653339	C	A	28	49
BRCA	TCGA-AR-A24Q	TBC1D8B	SNP	Missense_Mutation	23	106097454	T	G	49	51
BRCA	TCGA-AR-A24Q	CXorf40A	SNP	Missense_Mutation	23	148627223	T	A	58	67
BRCA	TCGA-AR-A24Q	PHKA2	SNP	Splice_Site	23	18961827	C	T	18	100
BRCA	TCGA-AR-A24Q	KDM6A	SNP	Splice_Site	23	44969495	G	C	36	96
BRCA	TCGA-AR-A24Q	PHF8	SNP	Missense_Mutation	23	54020123	C	T	28	51
BRCA	TCGA-AR-A24Q	VSIG4	SNP	Missense_Mutation	23	65253420	A	T	7	68
BRCA	TCGA-AR-A24Q	MED12	SNP	Missense_Mutation	23	70356243	G	A	37	62
BRCA	TCGA-AR-A24Q	COL6A5	SNP	Missense_Mutation	3	130110337	G	A	38	93
BRCA	TCGA-AR-A24Q	ATP2C1	SNP	Missense_Mutation	3	130686035	G	C	44	97
BRCA	TCGA-AR-A24Q	FBLN2	SNP	Missense_Mutation	3	13669464	G	C	48	100
BRCA	TCGA-AR-A24Q	MED12L	SNP	Silent	3	150840683	T	A	55	47
BRCA	TCGA-AR-A24Q	BTD	SNP	Missense_Mutation	3	15677076	G	A	45	80
BRCA	TCGA-AR-A24Q	ZBBX	SNP	Missense_Mutation	3	167000239	T	C	63	72
BRCA	TCGA-AR-A24Q	NDUFB5	SNP	Missense_Mutation	3	179341750	A	G	11	34
BRCA	TCGA-AR-A24Q	EIF2B5	SNP	Silent	3	183857942	G	A	35	55
BRCA	TCGA-AR-A24Q	EPHA3	SNP	Missense_Mutation	3	89390198	A	T	10	94
BRCA	TCGA-AR-A24Q	PABPC4L	SNP	Nonsense_Mutation	4	135122010	G	C	40	50
BRCA	TCGA-AR-A24Q	RAPGEF2	SNP	Nonsense_Mutation	4	160252682	G	T	41	100
BRCA	TCGA-AR-A24Q	KIAA1211	SNP	Silent	4	57182104	C	A	22	54
BRCA	TCGA-AR-A24Q	C4orf50	DEL	In_Frame_Del	4	5961272	GTT	-	40	28
BRCA	TCGA-AR-A24Q	AREG	SNP	Missense_Mutation	4	75311103	C	G	31	44
BRCA	TCGA-AR-A24Q	MAPK10	SNP	Missense_Mutation	4	87022223	T	A	50	94
BRCA	TCGA-AR-A24Q	GPR151	DEL	Frame_Shift_Del	5	145894915	GCTCAGCA	-	46	55
BRCA	TCGA-AR-A24Q	MYO10	SNP	Silent	5	16681999	G	T	42	55
BRCA	TCGA-AR-A24Q	C5orf34	SNP	Silent	5	43505873	G	A	34	64
BRCA	TCGA-AR-A24Q	ELL2	SNP	Missense_Mutation	5	95234001	G	T	33	59
BRCA	TCGA-AR-A24Q	GPRC6A	SNP	Missense_Mutation	6	117130674	C	G	29	93
BRCA	TCGA-AR-A24Q	SYNE1	SNP	Missense_Mutation	6	152527416	C	G	30	100
BRCA	TCGA-AR-A24Q	RUNX2	SNP	Missense_Mutation	6	45514594	C	G	22	82
BRCA	TCGA-AR-A24Q	TDRD6	SNP	Missense_Mutation	6	46657757	T	G	50	87
BRCA	TCGA-AR-A24Q	MRAP2	SNP	Silent	6	84798939	C	T	17	89
BRCA	TCGA-AR-A24Q	SRRT	SNP	Missense_Mutation	7	100484569	C	T	27	57
BRCA	TCGA-AR-A24Q	RELN	SNP	Splice_site	7	103197424	C	A	23	99
BRCA	TCGA-AR-A24Q	SPAM1	SNP	Missense_Mutation	7	123594195	G	A	33	60
BRCA	TCGA-AR-A24Q	ABCB8	SNP	Missense_Mutation	7	150739114	G	A	45	94
BRCA	TCGA-AR-A24Q	PAXIP1	SNP	Missense_Mutation	7	154754122	G	C	48	73
BRCA	TCGA-AR-A24Q	OSBPL3	SNP	Missense_Mutation	7	24843951	G	C	44	65
BRCA	TCGA-AR-A24Q	HIP1	SNP	Silent	7	75192287	C	T	28	64
BRCA	TCGA-AR-A24Q	CSMD3	SNP	Silent	8	113326154	G	T	34	47
BRCA	TCGA-AR-A24Q	DLGAP2	SNP	Missense_Mutation	8	1581131	C	A	29	100
BRCA	TCGA-AR-A24Q	DOK2	SNP	Missense_Mutation	8	21767238	G	A	46	76
BRCA	TCGA-AR-A24Q	CSMD1	SNP	Missense_Mutation	8	2813173	C	T	30	100
BRCA	TCGA-AR-A24Q	UNC5D	SNP	Silent	8	35606156	C	G	29	52
BRCA	TCGA-AR-A24Q	ADAM9	SNP	Missense_Mutation	8	38899492	T	A	59	67
BRCA	TCGA-AR-A24Q	OR13C9	SNP	Silent	9	107379682	A	C	13	41
BRCA	TCGA-AR-A24Q	ABCA1	SNP	Missense_Mutation	9	107558476	C	A	21	100
BRCA	TCGA-AR-A24Q	LMX1B	SNP	Silent	9	129455805	C	A	30	67
BRCA	TCGA-AR-A24Q	MRPS2	SNP	Silent	9	138395757	G	T	47	82
BRCA	TCGA-AR-A24Q	NOL6	SNP	Missense_Mutation	9	33466362	G	A	41	51
BRCA	TCGA-AR-A24Q	NOL6	SNP	Silent	9	33467129	G	A	45	63
BRCA	TCGA-AR-A24Q	NOL6	SNP	Silent	9	33467240	G	A	33	52
BRCA	TCGA-AR-A24Q	NOL6	SNP	Missense_Mutation	9	33469038	G	A	45	96
BRCA	TCGA-AR-A24Q	NOL6	SNP	Missense_Mutation	9	33469547	G	C	41	98
BRCA	TCGA-AR-A24Q	PRKACG	SNP	Missense_Mutation	9	71628311	G	T	42	67
BRCA	TCGA-AR-A24Q	PRUNE2	SNP	Missense_Mutation	9	79324308	G	T	41	88
BRCA	TCGA-AR-A24Q	PRUNE2	SNP	Missense_Mutation	9	79325223	C	A	21	87
BRCA	TCGA-AR-A24Q	VPS13A	SNP	Missense_Mutation	9	79834980	G	C	45	84
BRCA	TCGA-AR-A24R	ADAR	SNP	Missense_Mutation	1	154557805	T	G	51	78
BRCA	TCGA-AR-A24R	INPP5B	SNP	Missense_Mutation	1	38341357	T	A	56	69
BRCA	TCGA-AR-A24R	CHUK	SNP	Missense_Mutation	10	101978864	G	A	35	94
BRCA	TCGA-AR-A24R	UHRF1BP1L	SNP	Missense_Mutation	12	100443954	C	T	19	92
BRCA	TCGA-AR-A24R	APPL2	SNP	Missense_Mutation	12	105589107	A	C	12	52
BRCA	TCGA-AR-A24R	OR4N5	SNP	Missense_Mutation	14	20612744	C	T	22	67
BRCA	TCGA-AR-A24R	TMED10	DEL	Frame_Shift_Del	14	75643127	CAGGTCCTTGTGA	-	25	66
BRCA	TCGA-AR-A24R	TMED10	DEL	Frame_Shift_Del	14	75643142	CTCC	-	32	66
BRCA	TCGA-AR-A24R	TTLL5	SNP	Missense_Mutation	14	76187037	A	G	7	80
BRCA	TCGA-AR-A24R	ZDHHC22	SNP	Missense_Mutation	14	77600207	C	T	25	74
BRCA	TCGA-AR-A24R	CNOT1	DEL	Frame_Shift_Del	16	58575434	GCTGACTTAAGTCATTT	-	42	100
BRCA	TCGA-AR-A24R	PIGW	SNP	Missense_Mutation	17	34894403	T	C	60	58
BRCA	TCGA-AR-A24R	DNAI2	SNP	Missense_Mutation	17	72310298	G	A	35	49
BRCA	TCGA-AR-A24R	REXO1	SNP	Silent	19	1825883	G	A	39	43
BRCA	TCGA-AR-A24R	THOP1	SNP	Silent	19	2807034	C	T	23	47
BRCA	TCGA-AR-A24R	SUPT5H	SNP	Missense_Mutation	19	39959953	A	C	11	91
BRCA	TCGA-AR-A24R	VWA3B	SNP	Missense_Mutation	2	98928335	C	T	27	28
BRCA	TCGA-AR-A24R	RUNX1	DEL	Frame_Shift_Del	21	36171623	AG	-	7	46
BRCA	TCGA-AR-A24R	CXorf65	SNP	Missense_Mutation	23	70325861	C	T	19	58
BRCA	TCGA-AR-A24R	ARHGEF38	DEL	Splice_site	4	106552056	AGA	-	11	49
BRCA	TCGA-AR-A24R	LETM1	SNP	Missense_Mutation	4	1818540	C	T	29	95
BRCA	TCGA-AR-A24R	MLLT4	SNP	Missense_Mutation	6	168323655	G	T	44	39
BRCA	TCGA-AR-A24R	DGKB	SNP	Silent	7	14737756	T	C	55	51
BRCA	TCGA-AR-A24R	GDAP1	SNP	Silent	8	75263607	C	T	20	70
BRCA	TCGA-AR-A24R	OR5C1	SNP	Missense_Mutation	9	125551282	G	A	38	53
BRCA	TCGA-AR-A24S	TTC24	SNP	Silent	1	156554995	G	A	39	37
BRCA	TCGA-AR-A24S	ZNF648	SNP	Missense_Mutation	1	182025773	G	A	38	55
BRCA	TCGA-AR-A24S	PDC	SNP	Missense_Mutation	1	186413472	A	G	4	89
BRCA	TCGA-AR-A24S	SYTL1	DEL	Frame_Shift_Del	1	27679789	TGACAGCCAGGCCAGCCGC	-	51	58
BRCA	TCGA-AR-A24S	BTBD19	SNP	Missense_Mutation	1	45275937	T	A	59	77
BRCA	TCGA-AR-A24S	HEATR8	SNP	Missense_Mutation	1	55166925	G	A	39	60
BRCA	TCGA-AR-A24S	CBL	SNP	Missense_Mutation	11	119103255	T	C	50	93
BRCA	TCGA-AR-A24S	TYR	SNP	Missense_Mutation	11	88911832	C	A	20	54
BRCA	TCGA-AR-A24S	RIMKLB	DEL	Frame_Shift_Del	12	8926133	CCCTTCTA	-	30	84
BRCA	TCGA-AR-A24S	AHNAK2	SNP	Silent	14	105416976	G	A	44	51
BRCA	TCGA-AR-A24S	PELI2	SNP	Missense_Mutation	14	56763462	C	T	23	69
BRCA	TCGA-AR-A24S	IL4R	SNP	Missense_Mutation	16	27375135	A	G	14	47
BRCA	TCGA-AR-A24S	RHBDL3	SNP	Missense_Mutation	17	30648095	C	T	27	48
BRCA	TCGA-AR-A24S	TP53	SNP	Missense_Mutation	17	7577096	T	A	58	87
BRCA	TCGA-AR-A24S	TMEM241	SNP	Silent	18	20936610	G	A	35	59
BRCA	TCGA-AR-A24S	ZNF880	SNP	Missense_Mutation	19	52888293	C	G	20	66
BRCA	TCGA-AR-A24S	ZNF578	SNP	Silent	19	53005128	G	A	41	58
BRCA	TCGA-AR-A24S	ZNF814	SNP	Missense_Mutation	19	58385256	A	G	9	67
BRCA	TCGA-AR-A24S	MUC16	SNP	Missense_Mutation	19	9073430	C	G	29	40
BRCA	TCGA-AR-A24S	ZNF699	SNP	Splice_site	19	9408556	C	A	24	63
BRCA	TCGA-AR-A24S	RALB	SNP	Missense_Mutation	2	121043616	C	T	29	100
BRCA	TCGA-AR-A24S	TTC21B	DEL	Splice_Site	2	166770076	AATTTTACCTCTAGAATATTC	-	1	53
BRCA	TCGA-AR-A24S	PNPT1	SNP	Missense_Mutation	2	55894154	G	A	45	99
BRCA	TCGA-AR-A24S	IL3RA	SNP	Missense_Mutation	23	1475125	C	G	30	49
BRCA	TCGA-AR-A24S	UBA1	SNP	Silent	23	47061807	C	T	31	46
BRCA	TCGA-AR-A24S	MTMR8	SNP	Missense_Mutation	23	63490847	C	T	32	53
BRCA	TCGA-AR-A24S	KIF4A	SNP	Missense_Mutation	23	69639610	G	A	40	58
BRCA	TCGA-AR-A24S	UPRT	SNP	Missense_Mutation	23	74519659	G	A	34	97
BRCA	TCGA-AR-A24S	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-AR-A24S	MASP1	SNP	Missense_Mutation	3	186961340	G	C	44	84
BRCA	TCGA-AR-A24S	CHL1	SNP	Silent	3	447268	C	T	19	48
BRCA	TCGA-AR-A24S	KIAA1109	SNP	Silent	4	123202768	T	A	60	89
BRCA	TCGA-AR-A24S	KIAA1109	SNP	Missense_Mutation	4	123271039	G	C	36	62
BRCA	TCGA-AR-A24S	PCDHB11	SNP	Silent	5	140581057	G	A	38	49
BRCA	TCGA-AR-A24S	PDCD6	SNP	Missense_Mutation	5	272863	G	A	37	61
BRCA	TCGA-AR-A24S	HIST1H2AE	SNP	Missense_Mutation	6	26217395	G	C	33	91
BRCA	TCGA-AR-A24S	WDR46	SNP	Missense_Mutation	6	33255278	G	C	33	60
BRCA	TCGA-AR-A24S	RELN	SNP	Missense_Mutation	7	103206817	C	T	30	97
BRCA	TCGA-AR-A24S	NDUFA4	INS	Frame_Shift_Ins	7	10978513	-	G	11	71
BRCA	TCGA-AR-A24S	MLL3	SNP	Nonsense_Mutation	7	151945451	C	A	30	64
BRCA	TCGA-AR-A24S	AKAP9	SNP	Silent	7	91643582	A	G	14	47
BRCA	TCGA-AR-A24S	ADCK5	SNP	Missense_Mutation	8	145616986	G	A	40	96
BRCA	TCGA-AR-A24S	ATP6V1B2	SNP	Silent	8	20074770	T	C	60	58
BRCA	TCGA-AR-A24S	COL5A1	SNP	Silent	9	137707822	A	G	2	53
BRCA	TCGA-AR-A24T	NGF	SNP	Missense_Mutation	1	115829179	G	A	38	65
BRCA	TCGA-AR-A24T	SPEN	DEL	Frame_Shift_Del	1	16265897	TCATGATTGTCAT	-	54	91
BRCA	TCGA-AR-A24T	FAM129A	SNP	Silent	1	184764696	C	T	31	47
BRCA	TCGA-AR-A24T	TCEANC2	SNP	Nonsense_Mutation	1	54562090	C	T	29	74
BRCA	TCGA-AR-A24T	OR5I1	SNP	Missense_Mutation	11	55703435	C	A	17	70
BRCA	TCGA-AR-A24T	ATXN2	SNP	Silent	12	111951204	C	T	30	65
BRCA	TCGA-AR-A24T	CBLN3	SNP	Silent	14	24898144	G	T	41	55
BRCA	TCGA-AR-A24T	LINS	INS	Frame_Shift_Ins	15	101120487	-	A	49	56
BRCA	TCGA-AR-A24T	CDH1	INS	Frame_Shift_Ins	16	68857311	-	T	32	62
BRCA	TCGA-AR-A24T	PIEZO2	SNP	Missense_Mutation	18	10800452	C	T	23	73
BRCA	TCGA-AR-A24T	WIZ	SNP	Missense_Mutation	19	15536454	C	T	19	94
BRCA	TCGA-AR-A24T	LILRB2	SNP	Missense_Mutation	19	54778665	G	A	43	38
BRCA	TCGA-AR-A24T	FBXO7	SNP	Missense_Mutation	22	32889166	G	T	41	88
BRCA	TCGA-AR-A24T	SSX6	SNP	Missense_Mutation	23	47972582	G	A	40	30
BRCA	TCGA-AR-A24T	MED12	SNP	Nonsense_Mutation	23	70352768	G	T	37	95
BRCA	TCGA-AR-A24T	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-AR-A24T	LARP7	SNP	Missense_Mutation	4	113568475	C	T	22	65
BRCA	TCGA-AR-A24T	DNAH5	SNP	Nonsense_Mutation	5	13770961	G	A	39	61
BRCA	TCGA-AR-A24T	SLC26A3	SNP	Missense_Mutation	7	107408040	C	T	19	65
BRCA	TCGA-AR-A24T	MKLN1	DEL	Frame_Shift_Del	7	131128391	GAGA	-	37	100
BRCA	TCGA-AR-A24T	MYOM2	INS	Frame_Shift_Ins	8	2020585	-	A	27	50
BRCA	TCGA-AR-A24T	MED27	SNP	Missense_Mutation	9	134759459	G	C	45	96
BRCA	TCGA-AR-A24U	FGGY	SNP	Silent	1	60073504	C	T	27	17
BRCA	TCGA-AR-A24U	PRKAR1A	SNP	Nonsense_Mutation	17	66526498	C	T	23	88
BRCA	TCGA-AR-A24U	TNFRSF11A	SNP	Missense_Mutation	18	60036105	G	A	38	48
BRCA	TCGA-AR-A24U	LIPE	SNP	Silent	19	42911525	C	T	29	54
BRCA	TCGA-AR-A24U	ABCB11	SNP	Silent	2	169780189	C	T	29	54
BRCA	TCGA-AR-A24U	TTN	SNP	Missense_Mutation	2	179438786	C	G	29	100
BRCA	TCGA-AR-A24U	UGP2	SNP	Missense_Mutation	2	64117287	G	T	33	88
BRCA	TCGA-AR-A24U	NCOA5	SNP	Missense_Mutation	20	44693794	C	G	32	99
BRCA	TCGA-AR-A24U	RUNX1	DEL	Frame_Shift_Del	21	36171674	GTGCACA	-	44	68
BRCA	TCGA-AR-A24U	NCF4	SNP	Missense_Mutation	22	37266473	C	G	23	83
BRCA	TCGA-AR-A24U	MAGEA12	SNP	Silent	23	151900087	G	C	33	48
BRCA	TCGA-AR-A24U	KLHL4	SNP	Missense_Mutation	23	86772968	T	A	50	56
BRCA	TCGA-AR-A24U	ABI3BP	SNP	Missense_Mutation	3	100569509	G	A	48	84
BRCA	TCGA-AR-A24U	IMPG2	SNP	Missense_Mutation	3	100963041	C	T	17	48
BRCA	TCGA-AR-A24U	PDCD10	SNP	Missense_Mutation	3	167437925	C	G	32	97
BRCA	TCGA-AR-A24U	TM4SF19	SNP	Missense_Mutation	3	196054386	C	A	28	60
BRCA	TCGA-AR-A24U	DAXX	SNP	Missense_Mutation	6	33288266	A	C	8	58
BRCA	TCGA-AR-A24U	TNPO3	SNP	Missense_Mutation	7	128658078	G	C	33	97
BRCA	TCGA-AR-A24U	SAMD12	SNP	Silent	8	119452167	G	A	33	75
BRCA	TCGA-AR-A24V	TFB2M	SNP	Missense_Mutation	1	246714526	C	T	18	52
BRCA	TCGA-AR-A24V	DMRTA2	SNP	Missense_Mutation	1	50884356	C	T	26	65
BRCA	TCGA-AR-A24V	FAM149B1	SNP	Missense_Mutation	10	74987940	C	A	30	57
BRCA	TCGA-AR-A24V	OR4A5	SNP	Missense_Mutation	11	51412226	A	T	8	78
BRCA	TCGA-AR-A24V	RBM14	SNP	Missense_Mutation	11	66393101	G	A	39	63
BRCA	TCGA-AR-A24V	GCN1L1	SNP	Missense_Mutation	12	120597695	G	T	41	85
BRCA	TCGA-AR-A24V	SLCO1C1	SNP	Missense_Mutation	12	20852607	G	A	33	52
BRCA	TCGA-AR-A24V	CCDC168	SNP	Silent	13	103388683	G	A	45	49
BRCA	TCGA-AR-A24V	CERS3	SNP	Silent	15	101019663	T	C	49	34
BRCA	TCGA-AR-A24V	GTF3C1	SNP	Missense_Mutation	16	27492404	C	A	27	53
BRCA	TCGA-AR-A24V	BCMO1	SNP	Missense_Mutation	16	81314502	C	G	17	90
BRCA	TCGA-AR-A24V	TRPV3	SNP	Missense_Mutation	17	3435985	G	A	39	95
BRCA	TCGA-AR-A24V	KRTAP4-16P	SNP	Missense_Mutation	17	39258126	G	T	46	66
BRCA	TCGA-AR-A24V	SCN4A	SNP	Silent	17	62019253	G	A	38	30
BRCA	TCGA-AR-A24V	ZBTB4	SNP	Missense_Mutation	17	7366623	G	A	39	54
BRCA	TCGA-AR-A24V	CACNG8	SNP	Silent	19	54481413	C	T	27	51
BRCA	TCGA-AR-A24V	NMI	SNP	Silent	2	152139454	A	G	7	49
BRCA	TCGA-AR-A24V	ALS2CR11	SNP	Missense_Mutation	2	202446931	G	A	40	79
BRCA	TCGA-AR-A24V	PKDREJ	SNP	Missense_Mutation	22	46657914	G	A	37	52
BRCA	TCGA-AR-A24V	ZDHHC9	SNP	Missense_Mutation	23	128948763	C	T	31	83
BRCA	TCGA-AR-A24V	SRGAP3	SNP	Silent	3	9068659	C	T	27	29
BRCA	TCGA-AR-A24V	FRYL	SNP	Missense_Mutation	4	48591834	T	A	58	90
BRCA	TCGA-AR-A24V	HEXB	SNP	Missense_Mutation	5	74014695	C	G	32	73
BRCA	TCGA-AR-A24V	AMPH	SNP	Missense_Mutation	7	38471799	T	A	58	80
BRCA	TCGA-AR-A24V	SNTG1	SNP	Silent	8	51503450	C	A	29	67
BRCA	TCGA-AR-A24V	CYP7B1	SNP	Silent	8	65528612	T	C	60	52
BRCA	TCGA-AR-A24W	PTEN	DEL	Frame_Shift_Del	10	89720799	TACT	-	57	76
BRCA	TCGA-AR-A24W	ADCY7	SNP	Missense_Mutation	16	50346035	G	A	38	69
BRCA	TCGA-AR-A24W	PRR12	SNP	Missense_Mutation	19	50098208	G	A	37	88
BRCA	TCGA-AR-A24W	OPN1MW2	SNP	Missense_Mutation	23	153492789	G	T	42	46
BRCA	TCGA-AR-A24W	VCX3B	SNP	Missense_Mutation	23	8434278	C	G	21	33
BRCA	TCGA-AR-A24W	ATP13A4	SNP	Silent	3	193174938	G	A	47	79
BRCA	TCGA-AR-A24W	BNC2	SNP	Missense_Mutation	9	16552596	C	T	30	100
BRCA	TCGA-AR-A24X	HRNR	SNP	Silent	1	152186614	C	G	31	35
BRCA	TCGA-AR-A24X	KIAA0754	SNP	Missense_Mutation	1	39878515	A	G	4	48
BRCA	TCGA-AR-A24X	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-AR-A24X	MUC5B	SNP	Missense_Mutation	11	1251759	C	T	27	60
BRCA	TCGA-AR-A24X	RBM19	SNP	Missense_Mutation	12	114395756	G	A	37	49
BRCA	TCGA-AR-A24X	TMEM132C	SNP	Silent	12	129180412	C	A	27	56
BRCA	TCGA-AR-A24X	EP400	SNP	Missense_Mutation	12	132466866	A	G	5	63
BRCA	TCGA-AR-A24X	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-AR-A24X	SAMD4A	SNP	Missense_Mutation	14	55251070	A	G	6	53
BRCA	TCGA-AR-A24X	PRMT7	SNP	Silent	16	68379634	G	T	46	41
BRCA	TCGA-AR-A24X	CDH1	SNP	Splice_Site	16	68862076	G	T	36	99
BRCA	TCGA-AR-A24X	CRK	SNP	Missense_Mutation	17	1340206	C	T	23	79
BRCA	TCGA-AR-A24X	MEGF8	SNP	Nonsense_Mutation	19	42875614	C	T	31	66
BRCA	TCGA-AR-A24X	CCDC114	SNP	Silent	19	48821779	G	A	38	38
BRCA	TCGA-AR-A24X	LRRC4B	SNP	Missense_Mutation	19	51021711	G	A	40	89
BRCA	TCGA-AR-A24X	PLEKHH2	SNP	Missense_Mutation	2	43971118	G	T	41	98
BRCA	TCGA-AR-A24X	HSCB	SNP	Missense_Mutation	22	29141935	T	A	51	63
BRCA	TCGA-AR-A24X	ALG13	SNP	Missense_Mutation	23	110951473	T	C	55	42
BRCA	TCGA-AR-A24X	KIAA1210	SNP	Silent	23	118222466	C	A	25	44
BRCA	TCGA-AR-A24X	ELF4	SNP	Missense_Mutation	23	129201171	C	T	22	53
BRCA	TCGA-AR-A24X	RPGR	SNP	Missense_Mutation	23	38146402	C	A	30	48
BRCA	TCGA-AR-A24X	IQSEC2	DEL	In_Frame_Del	23	53264131	TGG	-	51	57
BRCA	TCGA-AR-A24X	ACPP	SNP	Missense_Mutation	3	132047117	C	T	31	71
BRCA	TCGA-AR-A24X	CARD6	SNP	Silent	5	40841761	A	C	3	50
BRCA	TCGA-AR-A24X	HMGCS1	SNP	Nonsense_Mutation	5	43294939	G	T	36	57
BRCA	TCGA-AR-A24X	GPR116	SNP	Silent	6	46826226	G	A	42	54
BRCA	TCGA-AR-A24X	POLR2J	SNP	Silent	7	102116678	A	G	2	51
BRCA	TCGA-AR-A24X	FAM188B	SNP	Missense_Mutation	7	30825399	T	A	64	55
BRCA	TCGA-AR-A24X	SNAPC4	SNP	Missense_Mutation	9	139287147	C	T	31	84
BRCA	TCGA-AR-A24X	B4GALT1	SNP	Silent	9	33135286	T	C	51	49
BRCA	TCGA-AR-A24Z	MAPKAPK2	INS	In_Frame_Ins	1	206858675	-	GCC	7	41
BRCA	TCGA-AR-A24Z	PCNXL2	SNP	Missense_Mutation	1	233190018	G	T	41	60
BRCA	TCGA-AR-A24Z	ZNF496	SNP	Missense_Mutation	1	247492666	C	A	23	65
BRCA	TCGA-AR-A24Z	RBBP4	SNP	Silent	1	33117549	C	T	29	67
BRCA	TCGA-AR-A24Z	MYO3A	SNP	Missense_Mutation	10	26459429	A	C	12	55
BRCA	TCGA-AR-A24Z	AGAP6	SNP	Missense_Mutation	10	51748584	A	G	15	51
BRCA	TCGA-AR-A24Z	STOX1	SNP	Missense_Mutation	10	70644582	G	C	40	100
BRCA	TCGA-AR-A24Z	IDE	SNP	Missense_Mutation	10	94235707	C	G	32	98
BRCA	TCGA-AR-A24Z	PDE3A	SNP	Missense_Mutation	12	20801709	T	A	56	90
BRCA	TCGA-AR-A24Z	PTPRB	SNP	Nonsense_Mutation	12	70946687	C	A	31	97
BRCA	TCGA-AR-A24Z	NEK5	SNP	Missense_Mutation	13	52693487	G	A	43	95
BRCA	TCGA-AR-A24Z	GINS3	SNP	Missense_Mutation	16	58438557	G	T	43	100
BRCA	TCGA-AR-A24Z	MYH8	SNP	Missense_Mutation	17	10318441	A	G	16	89
BRCA	TCGA-AR-A24Z	NLK	DEL	In_Frame_Del	17	26370119	GCAGCCGCAGCAGCGGCT	-	42	87
BRCA	TCGA-AR-A24Z	NLK	SNP	Silent	17	26370124	C	T	23	57
BRCA	TCGA-AR-A24Z	MAP4K1	SNP	Missense_Mutation	19	39087977	G	A	38	55
BRCA	TCGA-AR-A24Z	RGPD3	SNP	Missense_Mutation	2	107032319	A	T	8	73
BRCA	TCGA-AR-A24Z	SCN1A	SNP	Missense_Mutation	2	166909415	G	T	46	100
BRCA	TCGA-AR-A24Z	TTN	SNP	Missense_Mutation	2	179448488	G	C	46	68
BRCA	TCGA-AR-A24Z	INHA	SNP	Missense_Mutation	2	220437229	G	A	38	48
BRCA	TCGA-AR-A24Z	COL4A4	SNP	Missense_Mutation	2	227979409	G	A	47	51
BRCA	TCGA-AR-A24Z	TTC7A	SNP	Missense_Mutation	2	47202156	C	T	23	71
BRCA	TCGA-AR-A24Z	TPTE	SNP	Missense_Mutation	21	10951293	T	C	50	64
BRCA	TCGA-AR-A24Z	COL18A1	SNP	Silent	21	46875483	G	A	46	76
BRCA	TCGA-AR-A24Z	CXorf40A	SNP	Silent	23	148628334	C	G	23	26
BRCA	TCGA-AR-A24Z	ERCC6L	SNP	Silent	23	71426994	G	A	37	47
BRCA	TCGA-AR-A24Z	SKIL	SNP	Missense_Mutation	3	170078924	C	G	24	50
BRCA	TCGA-AR-A24Z	YEATS2	DEL	In_Frame_Del	3	183493744	GGA	-	39	57
BRCA	TCGA-AR-A24Z	ATP13A4	SNP	Splice_site	3	193220428	C	A	30	83
BRCA	TCGA-AR-A24Z	PLXNB1	SNP	Missense_Mutation	3	48459737	A	T	7	90
BRCA	TCGA-AR-A24Z	DNAH12	SNP	Missense_Mutation	3	57388140	G	A	39	51
BRCA	TCGA-AR-A24Z	LAP3	SNP	Missense_Mutation	4	17585198	G	C	47	98
BRCA	TCGA-AR-A24Z	NFXL1	SNP	Missense_Mutation	4	47877233	C	A	25	56
BRCA	TCGA-AR-A24Z	DEFB131	SNP	Silent	4	9446286	A	C	11	47
BRCA	TCGA-AR-A24Z	MED20	SNP	Missense_Mutation	6	41874991	C	T	25	100
BRCA	TCGA-AR-A24Z	MANEA	SNP	Missense_Mutation	6	96053674	C	T	28	52
BRCA	TCGA-AR-A24Z	ZNF425	SNP	Missense_Mutation	7	148801215	G	T	38	50
BRCA	TCGA-AR-A24Z	ZNF425	SNP	Missense_Mutation	7	148802311	A	C	7	53
BRCA	TCGA-AR-A24Z	DNAH11	SNP	Missense_Mutation	7	21698446	A	C	10	52
BRCA	TCGA-AR-A24Z	IKBKAP	DEL	Frame_Shift_Del	9	111674571	AG	-	3	47
BRCA	TCGA-AR-A24Z	TYRP1	SNP	Missense_Mutation	9	12702372	G	A	36	76
BRCA	TCGA-AR-A24Z	NAIF1	SNP	Missense_Mutation	9	130825802	G	A	39	79
BRCA	TCGA-AR-A24Z	ADAMTS13	SNP	Missense_Mutation	9	136291344	A	T	13	65
BRCA	TCGA-AR-A250	UBE4B	SNP	Missense_Mutation	1	10161225	G	A	37	97
BRCA	TCGA-AR-A250	WNT2B	SNP	Silent	1	113058811	C	A	30	48
BRCA	TCGA-AR-A250	DENND2C	SNP	Missense_Mutation	1	115130504	G	C	33	88
BRCA	TCGA-AR-A250	NTRK1	SNP	Silent	1	156849829	G	A	38	27
BRCA	TCGA-AR-A250	SPTA1	SNP	Silent	1	158647585	T	C	60	54
BRCA	TCGA-AR-A250	PPOX	SNP	Missense_Mutation	1	161137894	G	A	46	76
BRCA	TCGA-AR-A250	F5	SNP	Missense_Mutation	1	169509917	G	C	45	86
BRCA	TCGA-AR-A250	TNR	SNP	Missense_Mutation	1	175365832	G	A	42	62
BRCA	TCGA-AR-A250	ANGEL2	SNP	Missense_Mutation	1	213178661	C	A	32	98
BRCA	TCGA-AR-A250	LRP8	SNP	Silent	1	53715175	G	A	47	70
BRCA	TCGA-AR-A250	ROR1	SNP	Missense_Mutation	1	64605929	G	C	37	100
BRCA	TCGA-AR-A250	KIAA1217	SNP	Silent	10	24508619	A	G	2	43
BRCA	TCGA-AR-A250	LIPK	SNP	Silent	10	90512357	C	G	21	50
BRCA	TCGA-AR-A250	EIF4G2	SNP	Missense_Mutation	11	10824832	C	A	30	100
BRCA	TCGA-AR-A250	ACAD8	SNP	Missense_Mutation	11	134131253	T	C	55	89
BRCA	TCGA-AR-A250	OR4X1	SNP	Silent	11	48285568	G	T	46	40
BRCA	TCGA-AR-A250	FAM160A2	SNP	Missense_Mutation	11	6235673	G	A	46	56
BRCA	TCGA-AR-A250	XRRA1	SNP	Missense_Mutation	11	74617338	C	G	32	55
BRCA	TCGA-AR-A250	PRB4	SNP	Missense_Mutation	12	11461753	C	T	30	52
BRCA	TCGA-AR-A250	SLC6A12	SNP	Missense_Mutation	12	302499	G	A	39	76
BRCA	TCGA-AR-A250	EDNRB	SNP	Missense_Mutation	13	78492504	C	T	25	56
BRCA	TCGA-AR-A250	RPL10L	SNP	Missense_Mutation	14	47120792	C	T	21	91
BRCA	TCGA-AR-A250	RPS6KA5	SNP	Missense_Mutation	14	91360826	C	A	29	100
BRCA	TCGA-AR-A250	LINS	SNP	Silent	15	101120811	G	A	36	49
BRCA	TCGA-AR-A250	MAP1A	SNP	Missense_Mutation	15	43813808	G	T	44	100
BRCA	TCGA-AR-A250	NEDD4	SNP	Missense_Mutation	15	56207669	C	T	31	69
BRCA	TCGA-AR-A250	KCTD13	SNP	Missense_Mutation	16	29937272	G	A	43	65
BRCA	TCGA-AR-A250	WDR59	SNP	Silent	16	74943795	C	A	25	55
BRCA	TCGA-AR-A250	MLYCD	SNP	Silent	16	83948758	C	T	27	52
BRCA	TCGA-AR-A250	ANKRD11	SNP	Missense_Mutation	16	89349778	C	G	32	87
BRCA	TCGA-AR-A250	CACNB1	SNP	Missense_Mutation	17	37331819	G	A	43	55
BRCA	TCGA-AR-A250	CNTD1	SNP	Missense_Mutation	17	40951117	C	T	30	57
BRCA	TCGA-AR-A250	SLC13A5	SNP	Missense_Mutation	17	6606341	C	T	27	93
BRCA	TCGA-AR-A250	KIAA1328	SNP	Nonsense_Mutation	18	34415224	C	G	29	61
BRCA	TCGA-AR-A250	UNC13A	SNP	Missense_Mutation	19	17740081	C	A	25	52
BRCA	TCGA-AR-A250	ZSCAN5C	SNP	Missense_Mutation	19	56717432	C	A	29	48
BRCA	TCGA-AR-A250	IL37	SNP	Splice_site	2	113675354	G	T	35	66
BRCA	TCGA-AR-A250	UBXN2A	SNP	Missense_Mutation	2	24194187	A	G	4	52
BRCA	TCGA-AR-A250	SLC8A1	SNP	Missense_Mutation	2	40405590	T	C	62	88
BRCA	TCGA-AR-A250	USP34	SNP	Silent	2	61473500	G	A	45	56
BRCA	TCGA-AR-A250	POLR1A	SNP	Missense_Mutation	2	86276113	C	T	31	47
BRCA	TCGA-AR-A250	TTC28	DEL	Splice_Site	22	28692181	CCTA	-	30	82
BRCA	TCGA-AR-A250	TBC1D8B	SNP	Missense_Mutation	23	106116842	C	G	29	93
BRCA	TCGA-AR-A250	CACNA1F	SNP	Missense_Mutation	23	49071972	C	T	32	76
BRCA	TCGA-AR-A250	CPXCR1	SNP	Missense_Mutation	23	88008722	C	T	29	50
BRCA	TCGA-AR-A250	PHLDB2	SNP	Missense_Mutation	3	111603283	G	A	41	62
BRCA	TCGA-AR-A250	ROPN1B	SNP	Silent	3	125694466	C	T	31	22
BRCA	TCGA-AR-A250	P2RY1	SNP	Missense_Mutation	3	152554344	C	T	31	99
BRCA	TCGA-AR-A250	ABCC5	SNP	Missense_Mutation	3	183643468	C	G	32	85
BRCA	TCGA-AR-A250	SHISA5	SNP	Missense_Mutation	3	48538577	C	T	29	50
BRCA	TCGA-AR-A250	C3orf67	SNP	Missense_Mutation	3	58849603	G	A	35	78
BRCA	TCGA-AR-A250	CRYBG3	SNP	Missense_Mutation	3	97596567	G	A	33	63
BRCA	TCGA-AR-A250	SH3RF1	SNP	Missense_Mutation	4	170057504	C	T	31	85
BRCA	TCGA-AR-A250	FAM193A	SNP	Missense_Mutation	4	2691340	G	C	41	83
BRCA	TCGA-AR-A250	TBC1D1	SNP	Nonsense_Mutation	4	38020062	C	T	29	100
BRCA	TCGA-AR-A250	KLB	SNP	Missense_Mutation	4	39439551	C	T	19	73
BRCA	TCGA-AR-A250	CCDC99	SNP	Missense_Mutation	5	169018164	T	A	55	67
BRCA	TCGA-AR-A250	CANX	SNP	Missense_Mutation	5	179149818	C	T	22	100
BRCA	TCGA-AR-A250	NUP155	SNP	Missense_Mutation	5	37310731	C	T	27	82
BRCA	TCGA-AR-A250	PARP8	SNP	Missense_Mutation	5	50090154	C	G	32	90
BRCA	TCGA-AR-A250	FAM184A	SNP	Silent	6	119327762	G	C	41	57
BRCA	TCGA-AR-A250	CCDC90A	SNP	Silent	6	13791083	C	T	19	46
BRCA	TCGA-AR-A250	TNFAIP3	SNP	Silent	6	138200310	G	A	38	40
BRCA	TCGA-AR-A250	NHSL1	SNP	Nonsense_Mutation	6	138751809	G	A	39	51
BRCA	TCGA-AR-A250	FANCE	SNP	Missense_Mutation	6	35423762	C	G	17	79
BRCA	TCGA-AR-A250	FAM84B	SNP	Silent	8	127568930	C	G	23	46
BRCA	TCGA-AR-A250	GSDMC	SNP	Silent	8	130774954	G	C	45	49
BRCA	TCGA-AR-A250	TEX10	SNP	Missense_Mutation	9	103092306	C	G	32	67
BRCA	TCGA-AR-A250	CARD9	SNP	Silent	9	139259656	G	A	38	45
BRCA	TCGA-AR-A250	FAM75A3	INS	Frame_Shift_Ins	9	40705911	-	A	21	43
BRCA	TCGA-AR-A250	GNA14	SNP	Silent	9	80049397	G	C	33	48
BRCA	TCGA-AR-A251	CELSR2	SNP	Nonsense_Mutation	1	109804509	C	G	20	63
BRCA	TCGA-AR-A251	SPAG17	SNP	Missense_Mutation	1	118574321	C	A	32	61
BRCA	TCGA-AR-A251	VPS13D	SNP	Splice_Site	1	12446242	A	G	7	75
BRCA	TCGA-AR-A251	TXNIP	SNP	Missense_Mutation	1	145439846	G	A	38	78
BRCA	TCGA-AR-A251	MTMR11	SNP	Splice_site	1	149905591	G	A	38	75
BRCA	TCGA-AR-A251	SPTA1	SNP	Missense_Mutation	1	158619688	C	T	23	70
BRCA	TCGA-AR-A251	ADCY10	SNP	Missense_Mutation	1	167815281	A	C	8	40
BRCA	TCGA-AR-A251	RCC2	SNP	Missense_Mutation	1	17736479	G	C	33	65
BRCA	TCGA-AR-A251	IVNS1ABP	SNP	Missense_Mutation	1	185276629	T	A	56	61
BRCA	TCGA-AR-A251	FAIM3	SNP	Missense_Mutation	1	207087275	T	G	51	50
BRCA	TCGA-AR-A251	WNT9A	SNP	Silent	1	228113079	T	C	55	36
BRCA	TCGA-AR-A251	OR2M5	SNP	Missense_Mutation	1	248309314	A	G	8	64
BRCA	TCGA-AR-A251	DHCR24	SNP	Silent	1	55319845	G	C	47	50
BRCA	TCGA-AR-A251	WLS	SNP	Missense_Mutation	1	68624831	A	G	11	91
BRCA	TCGA-AR-A251	CLCA1	SNP	Silent	1	86952406	C	T	21	51
BRCA	TCGA-AR-A251	GPR158	SNP	Silent	10	25887795	C	G	21	42
BRCA	TCGA-AR-A251	SVIL	SNP	Missense_Mutation	10	29812859	C	T	27	61
BRCA	TCGA-AR-A251	CTNNA3	SNP	Missense_Mutation	10	68979558	A	T	11	81
BRCA	TCGA-AR-A251	C10orf12	SNP	Missense_Mutation	10	98741410	C	G	32	66
BRCA	TCGA-AR-A251	ARHGAP42	SNP	Missense_Mutation	11	100814496	C	T	24	73
BRCA	TCGA-AR-A251	DYNC2H1	SNP	Missense_Mutation	11	103128341	G	A	39	100
BRCA	TCGA-AR-A251	GRIA4	SNP	Missense_Mutation	11	105845179	A	G	3	63
BRCA	TCGA-AR-A251	GRAMD1B	SNP	Splice_Site	11	123489814	G	A	35	75
BRCA	TCGA-AR-A251	OR8B8	SNP	Splice_site	11	124310048	A	G	7	56
BRCA	TCGA-AR-A251	ETS1	SNP	Silent	11	128354782	G	A	36	79
BRCA	TCGA-AR-A251	KCNJ11	SNP	Silent	11	17408655	C	T	21	66
BRCA	TCGA-AR-A251	OR51D1	SNP	Silent	11	4661473	G	T	44	50
BRCA	TCGA-AR-A251	OR51F1	SNP	Missense_Mutation	11	4790519	C	A	30	95
BRCA	TCGA-AR-A251	OR4A47	SNP	Missense_Mutation	11	48511007	C	A	20	57
BRCA	TCGA-AR-A251	TRIM64C	SNP	Missense_Mutation	11	49075726	C	T	25	53
BRCA	TCGA-AR-A251	OR4C15	SNP	Missense_Mutation	11	55322321	G	C	46	91
BRCA	TCGA-AR-A251	OR5A2	SNP	Missense_Mutation	11	59190015	A	T	12	56
BRCA	TCGA-AR-A251	OR4D9	SNP	Missense_Mutation	11	59283150	C	G	32	76
BRCA	TCGA-AR-A251	PATL1	SNP	Missense_Mutation	11	59434423	A	C	10	54
BRCA	TCGA-AR-A251	AHNAK	SNP	Missense_Mutation	11	62287791	G	C	41	83
BRCA	TCGA-AR-A251	PYGM	SNP	Missense_Mutation	11	64517909	C	G	32	94
BRCA	TCGA-AR-A251	ATG2A	SNP	Missense_Mutation	11	64674273	C	A	28	63
BRCA	TCGA-AR-A251	PPFIA1	SNP	Silent	11	70171060	G	T	47	46
BRCA	TCGA-AR-A251	UHRF1BP1L	SNP	Missense_Mutation	12	100451948	G	T	36	48
BRCA	TCGA-AR-A251	BTBD11	SNP	Missense_Mutation	12	108006618	T	G	55	92
BRCA	TCGA-AR-A251	CMKLR1	SNP	Missense_Mutation	12	108685751	A	T	11	90
BRCA	TCGA-AR-A251	GCN1L1	SNP	Missense_Mutation	12	120602277	C	T	26	68
BRCA	TCGA-AR-A251	GYS2	SNP	Silent	12	21693464	A	C	3	46
BRCA	TCGA-AR-A251	PTPRQ	SNP	Missense_Mutation	12	81013196	T	C	52	78
BRCA	TCGA-AR-A251	A2ML1	SNP	Missense_Mutation	12	8988187	G	A	33	70
BRCA	TCGA-AR-A251	SACS	SNP	Missense_Mutation	13	23907783	G	A	39	99
BRCA	TCGA-AR-A251	MYCBP2	SNP	Missense_Mutation	13	77671823	G	C	33	74
BRCA	TCGA-AR-A251	SLITRK5	SNP	Missense_Mutation	13	88327927	G	A	40	72
BRCA	TCGA-AR-A251	DZIP1	SNP	Silent	13	96234512	A	G	4	30
BRCA	TCGA-AR-A251	METTL3	SNP	Missense_Mutation	14	21968764	T	C	50	89
BRCA	TCGA-AR-A251	FANCM	SNP	Missense_Mutation	14	45606394	T	A	64	53
BRCA	TCGA-AR-A251	SYNE2	SNP	Missense_Mutation	14	64469831	G	T	43	82
BRCA	TCGA-AR-A251	SPTB	SNP	Missense_Mutation	14	65253616	C	T	30	51
BRCA	TCGA-AR-A251	POMT2	SNP	Missense_Mutation	14	77767549	C	A	19	54
BRCA	TCGA-AR-A251	VPS13C	SNP	Missense_Mutation	15	62219354	A	C	6	89
BRCA	TCGA-AR-A251	RSL1D1	SNP	Missense_Mutation	16	11935823	C	T	29	52
BRCA	TCGA-AR-A251	ABCC1	SNP	Silent	16	16150074	G	A	35	83
BRCA	TCGA-AR-A251	SMG1	SNP	Silent	16	18828730	G	A	35	59
BRCA	TCGA-AR-A251	OTOA	SNP	Missense_Mutation	16	21716582	A	T	6	46
BRCA	TCGA-AR-A251	VWA3A	SNP	Missense_Mutation	16	22128179	G	T	33	55
BRCA	TCGA-AR-A251	ABCA3	SNP	Missense_Mutation	16	2354098	A	G	3	75
BRCA	TCGA-AR-A251	RBBP6	DEL	In_Frame_Del	16	24578494	AAGATC	-	1	49
BRCA	TCGA-AR-A251	BCKDK	SNP	Missense_Mutation	16	31120644	G	T	42	73
BRCA	TCGA-AR-A251	ZNF423	SNP	Missense_Mutation	16	49671283	C	A	26	94
BRCA	TCGA-AR-A251	FAM65A	SNP	Missense_Mutation	16	67575419	G	T	35	54
BRCA	TCGA-AR-A251	ZNF286A	SNP	Missense_Mutation	17	15619893	T	G	52	50
BRCA	TCGA-AR-A251	NCOR1	SNP	Missense_Mutation	17	15978996	C	G	32	69
BRCA	TCGA-AR-A251	SPAG5	SNP	Missense_Mutation	17	26905075	C	G	29	78
BRCA	TCGA-AR-A251	MYO1D	SNP	Silent	17	30981576	C	T	24	72
BRCA	TCGA-AR-A251	GPATCH8	SNP	Missense_Mutation	17	42483296	C	A	28	62
BRCA	TCGA-AR-A251	SCRN2	SNP	Missense_Mutation	17	45916933	C	T	22	98
BRCA	TCGA-AR-A251	VEZF1	INS	In_Frame_Ins	17	56056604	-	TGCTGC	60	43
BRCA	TCGA-AR-A251	KCNJ16	SNP	Missense_Mutation	17	68128271	G	T	38	31
BRCA	TCGA-AR-A251	SRP68	DEL	Splice_Site	17	74036486	TGGCCCAGACTTACCTTATTGTCCTTGACT	-	51	45
BRCA	TCGA-AR-A251	RHBDF2	SNP	Missense_Mutation	17	74474958	G	T	41	55
BRCA	TCGA-AR-A251	TRAPPC8	SNP	Missense_Mutation	18	29480942	G	C	47	95
BRCA	TCGA-AR-A251	DNMT1	SNP	Missense_Mutation	19	10260544	G	A	39	84
BRCA	TCGA-AR-A251	AP3D1	SNP	Silent	19	2127191	G	C	47	69
BRCA	TCGA-AR-A251	BLVRB	SNP	Missense_Mutation	19	40957355	C	A	26	68
BRCA	TCGA-AR-A251	CYP2F1P	SNP	Silent	19	41324810	G	T	35	53
BRCA	TCGA-AR-A251	C5AR1	SNP	Missense_Mutation	19	47823226	C	G	31	49
BRCA	TCGA-AR-A251	KCNA7	SNP	Missense_Mutation	19	49573516	A	C	10	88
BRCA	TCGA-AR-A251	GRHL1	SNP	Missense_Mutation	2	10130840	T	C	50	75
BRCA	TCGA-AR-A251	SPAG16	SNP	Missense_Mutation	2	214160797	T	C	49	72
BRCA	TCGA-AR-A251	CXCR1	SNP	Silent	2	219029617	G	C	46	61
BRCA	TCGA-AR-A251	MFF	SNP	Missense_Mutation	2	228217280	A	G	10	80
BRCA	TCGA-AR-A251	SLC16A14	SNP	Missense_Mutation	2	230924032	C	T	29	86
BRCA	TCGA-AR-A251	AGXT	SNP	Silent	2	241810813	G	A	36	57
BRCA	TCGA-AR-A251	SLC8A1	SNP	Missense_Mutation	2	40655750	C	A	24	65
BRCA	TCGA-AR-A251	KCNG3	SNP	Missense_Mutation	2	42671481	G	A	34	100
BRCA	TCGA-AR-A251	PREPL	SNP	Missense_Mutation	2	44569611	C	G	28	62
BRCA	TCGA-AR-A251	LMAN2L	SNP	Silent	2	97405748	C	G	19	70
BRCA	TCGA-AR-A251	SIRPA	SNP	Missense_Mutation	20	1918063	G	C	34	73
BRCA	TCGA-AR-A251	CST1	SNP	Missense_Mutation	20	23731390	G	T	44	54
BRCA	TCGA-AR-A251	C20orf43	SNP	Missense_Mutation	20	55093254	A	G	6	89
BRCA	TCGA-AR-A251	CTCFL	SNP	Missense_Mutation	20	56099035	T	A	54	56
BRCA	TCGA-AR-A251	LSM14B	SNP	Missense_Mutation	20	60699699	C	T	30	84
BRCA	TCGA-AR-A251	APP	SNP	Missense_Mutation	21	27284272	C	G	29	83
BRCA	TCGA-AR-A251	PRDM15	SNP	Silent	21	43279763	G	A	39	30
BRCA	TCGA-AR-A251	KRTAP10-9	SNP	Missense_Mutation	21	46047942	C	G	30	73
BRCA	TCGA-AR-A251	DIP2A	SNP	Missense_Mutation	21	47974547	G	A	40	85
BRCA	TCGA-AR-A251	POTEH	SNP	Missense_Mutation	22	16287713	C	G	24	51
BRCA	TCGA-AR-A251	LIMK2	SNP	Missense_Mutation	22	31658194	G	T	43	82
BRCA	TCGA-AR-A251	SEPT3	SNP	Silent	22	42388724	C	G	25	57
BRCA	TCGA-AR-A251	RGAG1	SNP	Missense_Mutation	23	109694662	A	G	4	55
BRCA	TCGA-AR-A251	MAGEB6	SNP	Missense_Mutation	23	26212565	C	T	19	9
BRCA	TCGA-AR-A251	SMC1A	DNP	Missense_Mutation	23	53423213	GG	AT	35	53
BRCA	TCGA-AR-A251	PAGE3	SNP	Missense_Mutation	23	55287030	C	G	32	49
BRCA	TCGA-AR-A251	CBLB	SNP	Missense_Mutation	3	105464837	G	A	48	100
BRCA	TCGA-AR-A251	NR1I2	SNP	Splice_site	3	119533827	G	A	41	61
BRCA	TCGA-AR-A251	ALDH1L1	SNP	Missense_Mutation	3	125854388	G	C	34	75
BRCA	TCGA-AR-A251	IGSF10	SNP	Silent	3	151166527	A	T	1	49
BRCA	TCGA-AR-A251	SLC4A7	SNP	Missense_Mutation	3	27493965	C	T	30	91
BRCA	TCGA-AR-A251	ACOX2	SNP	Missense_Mutation	3	58508254	T	C	55	50
BRCA	TCGA-AR-A251	ARL13B	SNP	Missense_Mutation	3	93755594	G	C	33	75
BRCA	TCGA-AR-A251	PRSS12	SNP	Missense_Mutation	4	119204213	A	G	7	77
BRCA	TCGA-AR-A251	DCHS2	SNP	Silent	4	155157392	C	T	29	53
BRCA	TCGA-AR-A251	FGG	SNP	Missense_Mutation	4	155533009	C	G	32	86
BRCA	TCGA-AR-A251	SULT1B1	SNP	Missense_Mutation	4	70599960	G	A	42	79
BRCA	TCGA-AR-A251	MARCH6	SNP	Missense_Mutation	5	10394874	C	G	20	87
BRCA	TCGA-AR-A251	ADAMTS19	SNP	Silent	5	128977608	C	T	21	53
BRCA	TCGA-AR-A251	SEC24A	SNP	Missense_Mutation	5	134032874	G	T	44	86
BRCA	TCGA-AR-A251	ARAP3	SNP	Missense_Mutation	5	141051164	C	A	20	61
BRCA	TCGA-AR-A251	TRIO	SNP	Missense_Mutation	5	14498736	C	A	26	48
BRCA	TCGA-AR-A251	GRIA1	SNP	Missense_Mutation	5	153149761	A	G	10	62
BRCA	TCGA-AR-A251	HMGCS1	SNP	Missense_Mutation	5	43297126	C	A	32	72
BRCA	TCGA-AR-A251	IL6ST	SNP	Missense_Mutation	5	55264182	T	G	54	57
BRCA	TCGA-AR-A251	NSUN2	SNP	Silent	5	6600147	C	G	29	65
BRCA	TCGA-AR-A251	VCAN	SNP	Silent	5	82807965	G	A	35	54
BRCA	TCGA-AR-A251	FAM172A	SNP	Missense_Mutation	5	93294552	G	A	34	94
BRCA	TCGA-AR-A251	L3MBTL3	SNP	Missense_Mutation	6	130381217	G	T	36	81
BRCA	TCGA-AR-A251	PDE7B	SNP	Missense_Mutation	6	136512854	A	T	3	84
BRCA	TCGA-AR-A251	HIST1H2BH	SNP	Silent	6	26252226	T	G	53	59
BRCA	TCGA-AR-A251	DNAH8	SNP	Nonsense_Mutation	6	38854684	G	T	47	100
BRCA	TCGA-AR-A251	PTCHD4	SNP	Missense_Mutation	6	48036082	C	G	30	99
BRCA	TCGA-AR-A251	COL19A1	SNP	Missense_Mutation	6	70646698	G	C	47	58
BRCA	TCGA-AR-A251	KHDC3L	SNP	Missense_Mutation	6	74073327	C	A	18	49
BRCA	TCGA-AR-A251	DDX43	SNP	Missense_Mutation	6	74125920	C	T	18	60
BRCA	TCGA-AR-A251	ZCWPW1	SNP	Missense_Mutation	7	100007160	A	C	10	55
BRCA	TCGA-AR-A251	MUC17	SNP	Missense_Mutation	7	100675533	G	C	33	42
BRCA	TCGA-AR-A251	GALNTL5	SNP	Missense_Mutation	7	151664434	T	A	55	32
BRCA	TCGA-AR-A251	HDAC9	SNP	Missense_Mutation	7	18767317	C	T	22	74
BRCA	TCGA-AR-A251	RIMS2	DEL	Frame_Shift_Del	8	104928686	ACATTTGAGGAAGTGTACA	-	6	71
BRCA	TCGA-AR-A251	MYOM2	SNP	Nonsense_Mutation	8	2054293	C	G	20	62
BRCA	TCGA-AR-A251	DOCK5	SNP	Missense_Mutation	8	25240200	C	G	26	100
BRCA	TCGA-AR-A251	KAT6A	SNP	Missense_Mutation	8	41790483	C	A	28	98
BRCA	TCGA-AR-A251	CNGB3	SNP	Missense_Mutation	8	87680252	T	G	57	68
BRCA	TCGA-AR-A251	RAD54B	SNP	Missense_Mutation	8	95470589	C	G	32	66
BRCA	TCGA-AR-A251	ZNF462	SNP	Missense_Mutation	9	109688792	C	G	22	99
BRCA	TCGA-AR-A251	ST6GALNAC6	SNP	Missense_Mutation	9	130648843	C	G	24	55
BRCA	TCGA-AR-A251	CARD9	SNP	Silent	9	139264848	C	A	21	62
BRCA	TCGA-AR-A251	FREM1	SNP	Silent	9	14792819	G	T	47	47
BRCA	TCGA-AR-A251	RFX3	SNP	Missense_Mutation	9	3346722	G	A	41	83
BRCA	TCGA-AR-A251	TLN1	SNP	Silent	9	35713254	G	C	39	23
BRCA	TCGA-AR-A251	KANK1	SNP	Silent	9	742357	C	T	29	52
BRCA	TCGA-AR-A251	FAM75D1	SNP	Missense_Mutation	9	84608674	G	A	40	31
BRCA	TCGA-AR-A252	DDR2	SNP	Missense_Mutation	1	162731140	G	A	39	100
BRCA	TCGA-AR-A252	CX3CL1	SNP	Missense_Mutation	16	57413659	G	A	38	68
BRCA	TCGA-AR-A252	CDK10	SNP	Missense_Mutation	16	89758243	A	G	7	86
BRCA	TCGA-AR-A252	MYH2	SNP	Missense_Mutation	17	10428881	G	A	42	74
BRCA	TCGA-AR-A252	GIGYF2	SNP	Nonsense_Mutation	2	233655500	C	T	23	83
BRCA	TCGA-AR-A252	TMF1	SNP	Silent	3	69072340	T	C	64	45
BRCA	TCGA-AR-A252	SDK1	SNP	Missense_Mutation	7	4272965	G	A	39	57
BRCA	TCGA-AR-A254	TNR	SNP	Missense_Mutation	1	175323569	C	T	30	71
BRCA	TCGA-AR-A254	FAM171A1	SNP	Missense_Mutation	10	15255282	C	T	19	76
BRCA	TCGA-AR-A254	SLC29A3	SNP	Silent	10	73111334	C	A	30	56
BRCA	TCGA-AR-A254	SLC29A3	SNP	Missense_Mutation	10	73115895	C	A	30	81
BRCA	TCGA-AR-A254	TRIM6	SNP	Missense_Mutation	11	5631431	T	A	51	31
BRCA	TCGA-AR-A254	ANKRD52	SNP	Splice_site	12	56638218	T	A	52	60
BRCA	TCGA-AR-A254	VWA3A	SNP	Silent	16	22161156	G	T	38	12
BRCA	TCGA-AR-A254	TADA2A	SNP	Nonsense_Mutation	17	35822222	C	T	29	98
BRCA	TCGA-AR-A254	CDC6	SNP	Silent	17	38450220	G	A	33	61
BRCA	TCGA-AR-A254	TP53	SNP	Nonsense_Mutation	17	7579315	G	T	46	61
BRCA	TCGA-AR-A254	RTN2	SNP	Missense_Mutation	19	45997940	G	A	38	61
BRCA	TCGA-AR-A254	CARD8	SNP	Missense_Mutation	19	48737790	C	T	30	38
BRCA	TCGA-AR-A254	MYH14	SNP	Missense_Mutation	19	50764750	G	T	41	93
BRCA	TCGA-AR-A254	SYT3	SNP	Silent	19	51129221	G	A	39	46
BRCA	TCGA-AR-A254	CDC42EP3	SNP	Silent	2	37873401	C	T	31	15
BRCA	TCGA-AR-A254	TSPEAR	SNP	Missense_Mutation	21	45924690	G	C	44	95
BRCA	TCGA-AR-A254	PLCH1	SNP	Missense_Mutation	3	155241748	C	T	30	97
BRCA	TCGA-AR-A254	TRA2B	SNP	Missense_Mutation	3	185643364	C	T	27	100
BRCA	TCGA-AR-A254	DNAH5	SNP	Missense_Mutation	5	13901632	T	A	54	70
BRCA	TCGA-AR-A254	PCDHB15	SNP	Missense_Mutation	5	140626710	G	A	37	82
BRCA	TCGA-AR-A254	SYNPO	SNP	Missense_Mutation	5	150029320	G	A	48	69
BRCA	TCGA-AR-A254	SYNE1	SNP	Silent	6	152647219	G	A	40	50
BRCA	TCGA-AR-A254	FNDC1	SNP	Silent	6	159621606	C	T	23	79
BRCA	TCGA-AR-A254	CTTNBP2	SNP	Silent	7	117431492	C	T	31	44
BRCA	TCGA-AR-A254	DLX6	SNP	Missense_Mutation	7	96635680	T	A	53	80
BRCA	TCGA-AR-A254	KIAA1429	SNP	Missense_Mutation	8	95500985	A	C	5	60
BRCA	TCGA-AR-A254	TRIM32	SNP	Missense_Mutation	9	119460572	T	A	60	89
BRCA	TCGA-AR-A254	NOTCH1	SNP	Missense_Mutation	9	139390870	C	T	26	68
BRCA	TCGA-AR-A255	TRIM33	SNP	Missense_Mutation	1	114944055	A	G	5	94
BRCA	TCGA-AR-A255	FAM20B	SNP	Missense_Mutation	1	179019422	G	A	37	100
BRCA	TCGA-AR-A255	CACNA1E	SNP	Missense_Mutation	1	181767626	C	A	32	70
BRCA	TCGA-AR-A255	HMCN1	SNP	Missense_Mutation	1	186050516	G	A	37	99
BRCA	TCGA-AR-A255	GREM2	SNP	Missense_Mutation	1	240656696	G	A	38	63
BRCA	TCGA-AR-A255	DPH2	SNP	Missense_Mutation	1	44436697	G	A	42	94
BRCA	TCGA-AR-A255	WDR96	SNP	Missense_Mutation	10	105948072	C	A	32	56
BRCA	TCGA-AR-A255	PLCE1	SNP	Splice_site	10	95993811	G	C	44	70
BRCA	TCGA-AR-A255	PGR	SNP	Missense_Mutation	11	100933223	C	T	31	99
BRCA	TCGA-AR-A255	ATM	SNP	Nonsense_Mutation	11	108196269	C	T	29	74
BRCA	TCGA-AR-A255	AMBRA1	SNP	Nonsense_Mutation	11	46564000	C	A	30	83
BRCA	TCGA-AR-A255	WDR66	SNP	Missense_Mutation	12	122413496	G	C	37	67
BRCA	TCGA-AR-A255	SFSWAP	SNP	Silent	12	132241104	A	C	7	29
BRCA	TCGA-AR-A255	SLC38A4	SNP	Nonsense_Mutation	12	47163175	G	A	40	71
BRCA	TCGA-AR-A255	MLL2	DEL	In_Frame_Del	12	49427620	TGG	-	55	66
BRCA	TCGA-AR-A255	OR4Q3	SNP	Silent	14	20216051	C	A	30	49
BRCA	TCGA-AR-A255	GTF2A1	SNP	Missense_Mutation	14	81658982	G	T	48	76
BRCA	TCGA-AR-A255	CCDC88C	SNP	Missense_Mutation	14	91779543	C	T	30	64
BRCA	TCGA-AR-A255	NDUFAF1	SNP	Missense_Mutation	15	41687079	C	T	30	100
BRCA	TCGA-AR-A255	TIGD7	SNP	Silent	16	3349850	A	T	1	48
BRCA	TCGA-AR-A255	PKD1L2	SNP	Splice_Site	16	81193423	C	A	32	86
BRCA	TCGA-AR-A255	ABCC3	SNP	Missense_Mutation	17	48750941	C	A	27	69
BRCA	TCGA-AR-A255	CEP192	SNP	Missense_Mutation	18	13056429	C	G	26	55
BRCA	TCGA-AR-A255	PKN1	SNP	Missense_Mutation	19	14574672	A	G	8	61
BRCA	TCGA-AR-A255	ZNF546	SNP	Silent	19	40521493	G	A	39	45
BRCA	TCGA-AR-A255	NCR1	SNP	Missense_Mutation	19	55420747	G	A	39	41
BRCA	TCGA-AR-A255	POLR1B	SNP	Silent	2	113325615	G	A	48	58
BRCA	TCGA-AR-A255	KIF5C	SNP	Missense_Mutation	2	149798136	G	A	45	100
BRCA	TCGA-AR-A255	SCN2A	SNP	Missense_Mutation	2	166201270	G	T	47	100
BRCA	TCGA-AR-A255	ZC3H15	SNP	Missense_Mutation	2	187370543	A	G	14	80
BRCA	TCGA-AR-A255	ADAM23	SNP	Silent	2	207435499	G	T	47	52
BRCA	TCGA-AR-A255	CNNM4	SNP	Missense_Mutation	2	97427918	C	A	29	62
BRCA	TCGA-AR-A255	RALGAPA2	SNP	Silent	20	20553660	G	A	45	53
BRCA	TCGA-AR-A255	TTPAL	SNP	Missense_Mutation	20	43113021	G	A	34	100
BRCA	TCGA-AR-A255	KIAA1210	SNP	Missense_Mutation	23	118221586	G	T	46	55
BRCA	TCGA-AR-A255	SAGE1	SNP	Missense_Mutation	23	134994548	G	A	45	57
BRCA	TCGA-AR-A255	RPGR	INS	Frame_Shift_Ins	23	38145797	-	T	20	72
BRCA	TCGA-AR-A255	CPNE4	SNP	Missense_Mutation	3	131293958	G	T	33	94
BRCA	TCGA-AR-A255	PPP2R3A	SNP	Silent	3	135721399	G	A	46	48
BRCA	TCGA-AR-A255	XRN1	SNP	Nonsense_Mutation	3	142090130	C	A	32	84
BRCA	TCGA-AR-A255	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-AR-A255	TWF2	SNP	Missense_Mutation	3	52265497	C	A	18	85
BRCA	TCGA-AR-A255	HTR1F	SNP	Missense_Mutation	3	88039993	G	A	47	52
BRCA	TCGA-AR-A255	FILIP1L	DEL	Frame_Shift_Del	3	99648853	GCCTATGACCTCATCTCGA	-	46	49
BRCA	TCGA-AR-A255	TET2	SNP	Missense_Mutation	4	106190872	G	C	33	100
BRCA	TCGA-AR-A255	PRDM5	SNP	Missense_Mutation	4	121698355	G	A	39	76
BRCA	TCGA-AR-A255	SPATA4	SNP	Missense_Mutation	4	177116659	C	G	32	39
BRCA	TCGA-AR-A255	FAT1	SNP	Missense_Mutation	4	187540311	G	T	47	69
BRCA	TCGA-AR-A255	SLC4A4	SNP	Missense_Mutation	4	72205101	G	A	33	87
BRCA	TCGA-AR-A255	IL17B	SNP	Silent	5	148756493	G	A	43	56
BRCA	TCGA-AR-A255	PCLO	SNP	Missense_Mutation	7	82544944	C	T	31	100
BRCA	TCGA-AR-A255	CSMD3	SNP	Silent	8	113988070	A	G	16	82
BRCA	TCGA-AR-A255	HHLA1	SNP	Missense_Mutation	8	133101771	A	G	12	78
BRCA	TCGA-AR-A255	CNTLN	SNP	Missense_Mutation	9	17416099	T	G	60	54
BRCA	TCGA-AR-A255	ADAMTSL1	SNP	Missense_Mutation	9	18888027	C	A	32	61
BRCA	TCGA-AR-A256	PSMA5	SNP	Silent	1	109957929	C	T	32	78
BRCA	TCGA-AR-A256	OVGP1	SNP	Missense_Mutation	1	111966173	A	C	3	53
BRCA	TCGA-AR-A256	NGF	SNP	Missense_Mutation	1	115829056	G	A	38	62
BRCA	TCGA-AR-A256	GJA5	SNP	Missense_Mutation	1	147230581	C	T	22	54
BRCA	TCGA-AR-A256	PSMD4	SNP	Missense_Mutation	1	151227268	G	C	41	93
BRCA	TCGA-AR-A256	HCN3	SNP	Missense_Mutation	1	155255534	G	C	48	96
BRCA	TCGA-AR-A256	KIAA0907	SNP	Missense_Mutation	1	155899583	G	C	35	74
BRCA	TCGA-AR-A256	TTC24	SNP	Missense_Mutation	1	156551191	G	A	35	55
BRCA	TCGA-AR-A256	ETV3	SNP	Missense_Mutation	1	157095097	C	T	18	57
BRCA	TCGA-AR-A256	IGSF8	SNP	Missense_Mutation	1	160063683	C	G	24	75
BRCA	TCGA-AR-A256	F5	SNP	Missense_Mutation	1	169498986	C	G	28	62
BRCA	TCGA-AR-A256	ASTN1	SNP	Missense_Mutation	1	177001636	G	A	41	97
BRCA	TCGA-AR-A256	LAMC1	SNP	Missense_Mutation	1	183083678	A	G	4	65
BRCA	TCGA-AR-A256	CAPN2	SNP	Missense_Mutation	1	223934702	C	G	29	76
BRCA	TCGA-AR-A256	LYST	SNP	Silent	1	235860498	G	T	33	56
BRCA	TCGA-AR-A256	ACTN2	SNP	Silent	1	236918429	G	T	47	67
BRCA	TCGA-AR-A256	KIF26B	SNP	Silent	1	245850803	C	T	29	56
BRCA	TCGA-AR-A256	OR13G1	SNP	Missense_Mutation	1	247835593	G	T	41	48
BRCA	TCGA-AR-A256	GPR3	DEL	Frame_Shift_Del	1	27720951	TGCCGCATCGTCTGCCGCCATGCCCAGCAGAT	-	55	92
BRCA	TCGA-AR-A256	MACF1	SNP	Silent	1	39851426	G	A	47	59
BRCA	TCGA-AR-A256	CHD5	SNP	Missense_Mutation	1	6181593	G	T	44	53
BRCA	TCGA-AR-A256	RPE65	SNP	Missense_Mutation	1	68903958	C	T	19	84
BRCA	TCGA-AR-A256	PPRC1	SNP	Missense_Mutation	10	103909715	G	A	48	73
BRCA	TCGA-AR-A256	HSPA12A	SNP	Silent	10	118439100	C	T	27	18
BRCA	TCGA-AR-A256	ENKUR	SNP	Missense_Mutation	10	25284628	C	T	32	77
BRCA	TCGA-AR-A256	C10orf68	SNP	Missense_Mutation	10	33000568	G	C	45	50
BRCA	TCGA-AR-A256	RASSF4	SNP	Missense_Mutation	10	45487443	A	T	10	90
BRCA	TCGA-AR-A256	FRMPD2	SNP	Missense_Mutation	10	49386172	G	A	47	52
BRCA	TCGA-AR-A256	ANK3	SNP	Missense_Mutation	10	61831529	G	C	35	69
BRCA	TCGA-AR-A256	RUFY2	SNP	Silent	10	70153888	T	A	54	54
BRCA	TCGA-AR-A256	ITIH5	SNP	Silent	10	7618855	G	T	45	52
BRCA	TCGA-AR-A256	IDE	SNP	Missense_Mutation	10	94274755	C	G	29	100
BRCA	TCGA-AR-A256	CTR9	SNP	Missense_Mutation	11	10792118	G	A	33	100
BRCA	TCGA-AR-A256	ACAT1	SNP	Missense_Mutation	11	108017053	A	C	4	93
BRCA	TCGA-AR-A256	BRSK2	SNP	Missense_Mutation	11	1464595	G	T	40	73
BRCA	TCGA-AR-A256	OTOG	SNP	Missense_Mutation	11	17573591	G	T	42	49
BRCA	TCGA-AR-A256	TSPAN32	DEL	Frame_Shift_Del	11	2337833	CTGTGGTTTGCCATCCG	-	24	60
BRCA	TCGA-AR-A256	OSBPL5	SNP	Silent	11	3147733	C	A	31	61
BRCA	TCGA-AR-A256	F2	DEL	Frame_Shift_Del	11	46748272	CGACCTCTGTT	-	27	67
BRCA	TCGA-AR-A256	OR5D14	SNP	Missense_Mutation	11	55563515	C	T	24	50
BRCA	TCGA-AR-A256	MS4A7	SNP	Missense_Mutation	11	60160252	A	T	2	45
BRCA	TCGA-AR-A256	GANAB	SNP	Missense_Mutation	11	62402465	C	A	17	51
BRCA	TCGA-AR-A256	CDC42BPG	SNP	Nonsense_Mutation	11	64606639	C	A	30	96
BRCA	TCGA-AR-A256	EFEMP2	SNP	Missense_Mutation	11	65638053	C	G	20	62
BRCA	TCGA-AR-A256	PC	SNP	Missense_Mutation	11	66620009	A	C	10	88
BRCA	TCGA-AR-A256	NLRP14	SNP	Missense_Mutation	11	7063859	C	G	25	87
BRCA	TCGA-AR-A256	LRRC32	SNP	Missense_Mutation	11	76370691	C	G	25	61
BRCA	TCGA-AR-A256	RIMBP2	SNP	Splice_Site	12	130898669	C	A	18	97
BRCA	TCGA-AR-A256	P2RX2	SNP	Missense_Mutation	12	133198288	T	G	57	56
BRCA	TCGA-AR-A256	CMAS	SNP	Nonsense_Mutation	12	22214246	G	T	41	97
BRCA	TCGA-AR-A256	CASC1	SNP	Splice_site	12	25311497	T	C	54	72
BRCA	TCGA-AR-A256	ITPR2	SNP	Splice_site	12	26877590	T	A	63	90
BRCA	TCGA-AR-A256	BIN2	SNP	Silent	12	51685681	C	T	32	50
BRCA	TCGA-AR-A256	ESPL1	SNP	Missense_Mutation	12	53676930	A	G	12	62
BRCA	TCGA-AR-A256	OR6C3	SNP	Missense_Mutation	12	55725942	T	A	52	60
BRCA	TCGA-AR-A256	ACSM4	SNP	Silent	12	7473395	T	G	61	45
BRCA	TCGA-AR-A256	NAV3	SNP	Missense_Mutation	12	78591132	T	C	54	93
BRCA	TCGA-AR-A256	ZNF705A	SNP	Missense_Mutation	12	8328517	C	A	19	45
BRCA	TCGA-AR-A256	RXFP2	SNP	Missense_Mutation	13	32340136	T	G	64	74
BRCA	TCGA-AR-A256	PHF11	SNP	Missense_Mutation	13	50098309	T	G	52	61
BRCA	TCGA-AR-A256	RTL1	SNP	Silent	14	101350433	G	A	33	62
BRCA	TCGA-AR-A256	AHNAK2	SNP	Missense_Mutation	14	105412163	C	G	19	46
BRCA	TCGA-AR-A256	VTI1B	SNP	Splice_Site	14	68126640	C	G	28	97
BRCA	TCGA-AR-A256	RIN3	SNP	Missense_Mutation	14	93022208	C	G	24	61
BRCA	TCGA-AR-A256	LYSMD4	DEL	Frame_Shift_Del	15	100269499	AAAGTAGACC	-	13	57
BRCA	TCGA-AR-A256	LRRK1	SNP	Missense_Mutation	15	101555536	A	G	9	78
BRCA	TCGA-AR-A256	THBS1	SNP	Silent	15	39884927	T	C	51	53
BRCA	TCGA-AR-A256	C15orf23	SNP	Missense_Mutation	15	40675104	A	T	12	50
BRCA	TCGA-AR-A256	AP4E1	SNP	Missense_Mutation	15	51233946	C	T	29	97
BRCA	TCGA-AR-A256	DNAJA4	SNP	Silent	15	78566657	C	T	31	32
BRCA	TCGA-AR-A256	ADAMTSL3	SNP	Missense_Mutation	15	84568455	G	C	33	73
BRCA	TCGA-AR-A256	UNC45A	SNP	Missense_Mutation	15	91493734	A	G	16	90
BRCA	TCGA-AR-A256	PDXDC1	SNP	Silent	16	15103550	C	T	24	54
BRCA	TCGA-AR-A256	IL27	SNP	Missense_Mutation	16	28515309	G	T	42	52
BRCA	TCGA-AR-A256	ABCC11	SNP	Missense_Mutation	16	48245083	A	T	1	44
BRCA	TCGA-AR-A256	CCDC135	SNP	Missense_Mutation	16	57741527	C	G	31	27
BRCA	TCGA-AR-A256	FAM65A	SNP	Nonsense_Mutation	16	67580080	C	T	21	89
BRCA	TCGA-AR-A256	KRTAP4-7	SNP	Missense_Mutation	17	39240781	C	G	18	50
BRCA	TCGA-AR-A256	PSME3	SNP	Silent	17	40993571	C	T	25	98
BRCA	TCGA-AR-A256	WFIKKN2	SNP	Silent	17	48917309	G	A	39	28
BRCA	TCGA-AR-A256	LRRC37A3	SNP	Splice_Site	17	62865212	C	T	17	65
BRCA	TCGA-AR-A256	ABCA6	SNP	Splice_Site	17	67080498	T	C	55	87
BRCA	TCGA-AR-A256	GPR142	SNP	Missense_Mutation	17	72368470	G	T	44	67
BRCA	TCGA-AR-A256	TP53	INS	Frame_Shift_Ins	17	7579359	-	GA	39	49
BRCA	TCGA-AR-A256	WRAP53	SNP	Silent	17	7592245	C	T	31	46
BRCA	TCGA-AR-A256	TMC6	DEL	In_Frame_Del	17	76121839	AGGTCGTACAGGCGG	-	7	70
BRCA	TCGA-AR-A256	FASN	SNP	Missense_Mutation	17	80041432	C	T	30	94
BRCA	TCGA-AR-A256	METRNL	SNP	Silent	17	81043153	C	T	19	50
BRCA	TCGA-AR-A256	MYH10	SNP	Missense_Mutation	17	8390870	G	A	38	57
BRCA	TCGA-AR-A256	ABCA7	DEL	Frame_Shift_Del	19	1061826	TT	-	60	83
BRCA	TCGA-AR-A256	MAN2B1	SNP	Missense_Mutation	19	12760800	G	T	39	73
BRCA	TCGA-AR-A256	RAD23A	SNP	Nonsense_Mutation	19	13059325	C	G	29	74
BRCA	TCGA-AR-A256	SIN3B	SNP	Missense_Mutation	19	16964996	C	G	24	83
BRCA	TCGA-AR-A256	IFI30	SNP	Missense_Mutation	19	18286477	G	C	36	53
BRCA	TCGA-AR-A256	LSR	SNP	Missense_Mutation	19	35758116	C	G	22	71
BRCA	TCGA-AR-A256	CEACAM5	SNP	Missense_Mutation	19	42221424	G	A	41	39
BRCA	TCGA-AR-A256	TMEM145	SNP	Missense_Mutation	19	42821924	C	G	20	75
BRCA	TCGA-AR-A256	PLIN4	SNP	Missense_Mutation	19	4510826	A	T	11	54
BRCA	TCGA-AR-A256	KLK14	DEL	In_Frame_Del	19	51582880	CCTGACGAACCACGCGCAGCACCTGCTGGGTGG	-	18	67
BRCA	TCGA-AR-A256	LILRA2	SNP	Silent	19	55087518	C	T	29	50
BRCA	TCGA-AR-A256	SSC5D	SNP	Missense_Mutation	19	56029455	C	A	22	51
BRCA	TCGA-AR-A256	NLRP13	SNP	Missense_Mutation	19	56423120	C	G	24	61
BRCA	TCGA-AR-A256	MUC16	SNP	Missense_Mutation	19	8974096	G	T	46	52
BRCA	TCGA-AR-A256	MUC16	SNP	Silent	19	9004897	C	T	32	49
BRCA	TCGA-AR-A256	TTN	SNP	Nonsense_Mutation	2	179614480	A	T	13	90
BRCA	TCGA-AR-A256	ORC2	SNP	Splice_site	2	201776110	C	G	22	80
BRCA	TCGA-AR-A256	PTPRN	SNP	Silent	2	220155281	C	A	26	52
BRCA	TCGA-AR-A256	RESP18	DEL	Splice_Site	2	220193616	TTCAATGCCTATTTTAAACTCAATACTTA	-	64	45
BRCA	TCGA-AR-A256	UGT1A4	SNP	Missense_Mutation	2	234627956	T	C	57	51
BRCA	TCGA-AR-A256	DPYSL5	SNP	Silent	2	27165483	G	A	46	46
BRCA	TCGA-AR-A256	BIRC6	SNP	Missense_Mutation	2	32654312	T	C	50	54
BRCA	TCGA-AR-A256	LHCGR	SNP	Missense_Mutation	2	48915906	C	G	25	61
BRCA	TCGA-AR-A256	USP34	SNP	Missense_Mutation	2	61515816	G	A	48	96
BRCA	TCGA-AR-A256	CYP26B1	SNP	Missense_Mutation	2	72360334	G	T	34	77
BRCA	TCGA-AR-A256	SLC4A5	SNP	Splice_site	2	74462341	C	T	18	60
BRCA	TCGA-AR-A256	LBX2	SNP	Silent	2	74725096	G	A	43	50
BRCA	TCGA-AR-A256	SDCBP2	SNP	Missense_Mutation	20	1299057	A	G	14	80
BRCA	TCGA-AR-A256	ADAM33	SNP	Silent	20	3655440	G	C	33	82
BRCA	TCGA-AR-A256	TGM2	SNP	Missense_Mutation	20	36759526	C	A	23	77
BRCA	TCGA-AR-A256	TBC1D20	SNP	Missense_Mutation	20	420924	G	T	47	94
BRCA	TCGA-AR-A256	FAM65C	SNP	Missense_Mutation	20	49208921	C	G	27	62
BRCA	TCGA-AR-A256	FAM65C	SNP	Missense_Mutation	20	49236530	C	G	24	76
BRCA	TCGA-AR-A256	PHACTR3	SNP	Missense_Mutation	20	58349443	G	C	41	78
BRCA	TCGA-AR-A256	ZNF280B	SNP	Missense_Mutation	22	22842463	G	A	48	91
BRCA	TCGA-AR-A256	MICALL1	SNP	Missense_Mutation	22	38308003	G	C	40	65
BRCA	TCGA-AR-A256	CHADL	SNP	Silent	22	41635564	G	A	43	62
BRCA	TCGA-AR-A256	SERHL2	SNP	Missense_Mutation	22	42962330	C	A	21	54
BRCA	TCGA-AR-A256	CELSR1	SNP	Splice_Site	22	46790160	C	T	32	89
BRCA	TCGA-AR-A256	HCFC1	SNP	Missense_Mutation	23	153225483	G	T	40	75
BRCA	TCGA-AR-A256	KIAA1524	SNP	Nonsense_Mutation	3	108301047	G	T	46	52
BRCA	TCGA-AR-A256	SYN2	SNP	Silent	3	12203643	C	T	17	77
BRCA	TCGA-AR-A256	SLC12A8	SNP	Silent	3	124829135	C	G	19	38
BRCA	TCGA-AR-A256	SI	SNP	Missense_Mutation	3	164733798	T	A	58	53
BRCA	TCGA-AR-A256	MECOM	SNP	Missense_Mutation	3	168834507	A	G	15	93
BRCA	TCGA-AR-A256	TNIK	SNP	Missense_Mutation	3	170875269	G	C	46	100
BRCA	TCGA-AR-A256	DCUN1D1	SNP	Missense_Mutation	3	182665361	C	T	32	97
BRCA	TCGA-AR-A256	VWA5B2	SNP	Missense_Mutation	3	183959139	G	T	45	46
BRCA	TCGA-AR-A256	CPN2	SNP	Silent	3	194063051	G	A	43	44
BRCA	TCGA-AR-A256	MFI2	SNP	Missense_Mutation	3	196744075	C	T	31	61
BRCA	TCGA-AR-A256	LZTFL1	SNP	Missense_Mutation	3	45872443	C	G	28	61
BRCA	TCGA-AR-A256	DALRD3	SNP	Missense_Mutation	3	49054878	G	A	47	40
BRCA	TCGA-AR-A256	ITIH1	SNP	Missense_Mutation	3	52822258	C	A	18	48
BRCA	TCGA-AR-A256	SYNPR	SNP	Splice_Site	3	63466633	G	A	44	93
BRCA	TCGA-AR-A256	NFKB1	SNP	Missense_Mutation	4	103500040	C	T	31	50
BRCA	TCGA-AR-A256	SYNPO2	SNP	Missense_Mutation	4	119951302	C	A	17	60
BRCA	TCGA-AR-A256	FBXW7	SNP	Missense_Mutation	4	153247168	T	C	49	93
BRCA	TCGA-AR-A256	ARAP2	SNP	Silent	4	36130231	C	A	17	48
BRCA	TCGA-AR-A256	EVC2	SNP	Nonsense_Mutation	4	5624640	G	A	47	63
BRCA	TCGA-AR-A256	JAKMIP1	SNP	Missense_Mutation	4	6055709	A	C	9	63
BRCA	TCGA-AR-A256	FER	SNP	Missense_Mutation	5	108516525	A	G	11	91
BRCA	TCGA-AR-A256	ZNF608	DEL	In_Frame_Del	5	124080554	CTT	-	24	72
BRCA	TCGA-AR-A256	PPP2CA	DEL	Frame_Shift_Del	5	133541707	CCACCAATTCTAAACAGTT	-	26	100
BRCA	TCGA-AR-A256	PCDHGB4	SNP	Silent	5	140769218	A	T	15	69
BRCA	TCGA-AR-A256	ARAP3	SNP	Missense_Mutation	5	141051281	G	T	33	72
BRCA	TCGA-AR-A256	SLIT3	SNP	Missense_Mutation	5	168727598	G	C	44	74
BRCA	TCGA-AR-A256	NSD1	SNP	Silent	5	176562116	C	T	24	58
BRCA	TCGA-AR-A256	ADCY2	SNP	Silent	5	7709446	A	G	6	43
BRCA	TCGA-AR-A256	VGLL2	SNP	Missense_Mutation	6	117589357	T	C	61	87
BRCA	TCGA-AR-A256	STXBP5	SNP	Silent	6	147636833	A	C	15	53
BRCA	TCGA-AR-A256	TCP10	SNP	Missense_Mutation	6	167789534	T	A	60	51
BRCA	TCGA-AR-A256	MICB	SNP	Silent	6	31474128	A	C	6	36
BRCA	TCGA-AR-A256	DOM3Z	SNP	Missense_Mutation	6	31937797	C	T	19	77
BRCA	TCGA-AR-A256	MDGA1	SNP	Silent	6	37620061	G	A	48	69
BRCA	TCGA-AR-A256	CUL7	DEL	Frame_Shift_Del	6	43018922	GCTCACATCTGCCAGCTGA	-	42	55
BRCA	TCGA-AR-A256	XPO5	INS	Frame_Shift_Ins	6	43535019	-	C	54	70
BRCA	TCGA-AR-A256	XPO5	DEL	In_Frame_Del	6	43535023	AGA	-	15	44
BRCA	TCGA-AR-A256	PAQR8	SNP	Silent	6	52268806	C	G	23	35
BRCA	TCGA-AR-A256	BAI3	SNP	Missense_Mutation	6	70071303	C	A	18	96
BRCA	TCGA-AR-A256	UBE3D	SNP	Silent	6	83728709	G	A	45	68
BRCA	TCGA-AR-A256	NT5E	SNP	Missense_Mutation	6	86203631	G	A	39	96
BRCA	TCGA-AR-A256	MUC17	SNP	Missense_Mutation	7	100696289	T	A	55	73
BRCA	TCGA-AR-A256	SERPINE1	SNP	Missense_Mutation	7	100777023	C	G	26	91
BRCA	TCGA-AR-A256	PNPLA8	SNP	Missense_Mutation	7	108131874	T	C	56	69
BRCA	TCGA-AR-A256	GCC1	SNP	Missense_Mutation	7	127222558	G	A	33	62
BRCA	TCGA-AR-A256	STK31	SNP	Missense_Mutation	7	23809335	C	G	20	61
BRCA	TCGA-AR-A256	RPA3	SNP	Missense_Mutation	7	7676652	T	A	53	52
BRCA	TCGA-AR-A256	ATP5J2-PTCD1	INS	Frame_Shift_Ins	7	99026733	-	CGTAC	42	81
BRCA	TCGA-AR-A256	KCNV1	SNP	Missense_Mutation	8	110980364	C	T	32	91
BRCA	TCGA-AR-A256	KCNQ3	SNP	Splice_Site	8	133182580	C	A	26	97
BRCA	TCGA-AR-A256	COL22A1	SNP	Missense_Mutation	8	139890242	G	T	43	98
BRCA	TCGA-AR-A256	ESCO2	SNP	Silent	8	27634128	G	C	45	54
BRCA	TCGA-AR-A256	TM2D2	SNP	Missense_Mutation	8	38852899	C	G	32	98
BRCA	TCGA-AR-A256	TCEB1	SNP	Missense_Mutation	8	74859004	G	A	45	98
BRCA	TCGA-AR-A256	BAAT	DEL	In_Frame_Del	9	104125223	TAGGTAAATAGCCATAGA	-	61	54
BRCA	TCGA-AR-A256	KIAA0368	SNP	Missense_Mutation	9	114176865	C	A	26	67
BRCA	TCGA-AR-A256	FKBP15	SNP	Silent	9	115931533	G	C	45	50
BRCA	TCGA-AR-A256	PRPF4	SNP	Missense_Mutation	9	116053191	A	C	2	66
BRCA	TCGA-AR-A256	MAPKAP1	SNP	Missense_Mutation	9	128246850	T	C	58	91
BRCA	TCGA-AR-A256	TBC1D13	SNP	Missense_Mutation	9	131553046	T	C	55	89
BRCA	TCGA-AR-A256	LINGO2	SNP	Silent	9	27950343	G	A	43	56
BRCA	TCGA-AR-A256	UBE2R2	SNP	Missense_Mutation	9	33900241	G	A	45	100
BRCA	TCGA-B6-A0I2	ASAP3	SNP	Silent	1	23759634	C	A	27	41
BRCA	TCGA-B6-A0I2	SMYD3	SNP	Missense_Mutation	1	246091315	C	A	28	86
BRCA	TCGA-B6-A0I2	CNN3	SNP	Missense_Mutation	1	95368739	A	C	16	76
BRCA	TCGA-B6-A0I2	DKK3	SNP	Silent	11	12020297	G	C	33	56
BRCA	TCGA-B6-A0I2	API5	SNP	Missense_Mutation	11	43340343	G	C	33	88
BRCA	TCGA-B6-A0I2	LOC120824	SNP	Missense_Mutation	11	49000623	C	G	32	52
BRCA	TCGA-B6-A0I2	MARK2	SNP	Nonsense_Mutation	11	63669754	C	T	17	84
BRCA	TCGA-B6-A0I2	KCTD21	SNP	Missense_Mutation	11	77884970	C	A	18	69
BRCA	TCGA-B6-A0I2	PRB2	SNP	Missense_Mutation	12	11546633	T	A	63	39
BRCA	TCGA-B6-A0I2	RARG	SNP	Missense_Mutation	12	53607025	G	A	39	99
BRCA	TCGA-B6-A0I2	LRP1	SNP	Silent	12	57567573	C	A	29	82
BRCA	TCGA-B6-A0I2	ENOX1	SNP	Missense_Mutation	13	43930276	C	T	31	97
BRCA	TCGA-B6-A0I2	PRKD1	SNP	Nonsense_Mutation	14	30107713	C	A	31	87
BRCA	TCGA-B6-A0I2	SLC8A3	SNP	Silent	14	70515731	C	A	22	36
BRCA	TCGA-B6-A0I2	ADCK1	SNP	Nonsense_Mutation	14	78325602	C	T	23	67
BRCA	TCGA-B6-A0I2	CASC5	SNP	Missense_Mutation	15	40947129	G	C	34	51
BRCA	TCGA-B6-A0I2	CCDC33	SNP	Missense_Mutation	15	74588246	A	G	9	48
BRCA	TCGA-B6-A0I2	AGBL1	SNP	Splice_site	15	86838639	C	T	23	73
BRCA	TCGA-B6-A0I2	ACSM2B	SNP	Silent	16	20548586	C	T	27	51
BRCA	TCGA-B6-A0I2	NMRAL1	SNP	Silent	16	4511847	G	C	45	58
BRCA	TCGA-B6-A0I2	IGF2BP1	SNP	Missense_Mutation	17	47117353	G	A	34	99
BRCA	TCGA-B6-A0I2	MRPS7	SNP	Missense_Mutation	17	73261843	G	C	45	100
BRCA	TCGA-B6-A0I2	TP53	INS	Frame_Shift_Ins	17	7578446	-	GGCCA	51	60
BRCA	TCGA-B6-A0I2	GREB1L	SNP	Missense_Mutation	18	19020328	G	A	36	59
BRCA	TCGA-B6-A0I2	MIB1	SNP	Nonsense_Mutation	18	19426998	C	T	31	86
BRCA	TCGA-B6-A0I2	DCC	SNP	Nonsense_Mutation	18	50450136	G	T	45	74
BRCA	TCGA-B6-A0I2	CDC37	SNP	Missense_Mutation	19	10514100	G	A	40	90
BRCA	TCGA-B6-A0I2	RNASEH2A	SNP	Missense_Mutation	19	12923995	G	A	41	84
BRCA	TCGA-B6-A0I2	CPAMD8	SNP	Missense_Mutation	19	17039789	C	G	32	72
BRCA	TCGA-B6-A0I2	DPF1	SNP	Missense_Mutation	19	38708105	T	G	51	68
BRCA	TCGA-B6-A0I2	GMFG	SNP	Missense_Mutation	19	39826138	C	G	32	89
BRCA	TCGA-B6-A0I2	CNTNAP5	SNP	Missense_Mutation	2	125555837	C	A	32	62
BRCA	TCGA-B6-A0I2	SF3B1	SNP	Missense_Mutation	2	198267459	G	A	34	100
BRCA	TCGA-B6-A0I2	DNAH6	SNP	Silent	2	84949763	C	A	21	78
BRCA	TCGA-B6-A0I2	LOC344065	SNP	Missense_Mutation	2	95880530	G	C	45	58
BRCA	TCGA-B6-A0I2	R3HDML	SNP	Missense_Mutation	20	42966018	G	A	39	96
BRCA	TCGA-B6-A0I2	IFNAR1	SNP	Missense_Mutation	21	34715607	C	T	28	78
BRCA	TCGA-B6-A0I2	SLC25A18	SNP	Missense_Mutation	22	18069986	C	G	32	96
BRCA	TCGA-B6-A0I2	LZTR1	SNP	Splice_site	22	21342406	C	T	19	56
BRCA	TCGA-B6-A0I2	RTDR1	SNP	Missense_Mutation	22	23401684	G	A	38	51
BRCA	TCGA-B6-A0I2	ATP11C	SNP	Silent	23	138901509	G	A	33	56
BRCA	TCGA-B6-A0I2	PRICKLE3	SNP	Missense_Mutation	23	49032267	C	T	29	59
BRCA	TCGA-B6-A0I2	CACNA1F	SNP	Missense_Mutation	23	49071852	G	A	39	82
BRCA	TCGA-B6-A0I2	MYO10	SNP	Missense_Mutation	5	16671048	C	G	30	100
BRCA	TCGA-B6-A0I2	KIAA0947	SNP	Missense_Mutation	5	5463316	T	G	57	46
BRCA	TCGA-B6-A0I2	HIST1H4G	SNP	Silent	6	26247074	G	C	45	52
BRCA	TCGA-B6-A0I2	ZNF425	SNP	Missense_Mutation	7	148801933	C	G	22	49
BRCA	TCGA-B6-A0I2	ACTR3B	SNP	Missense_Mutation	7	152513624	C	T	19	82
BRCA	TCGA-B6-A0I2	PPP1R17	SNP	Missense_Mutation	7	31735126	G	C	33	72
BRCA	TCGA-B6-A0I2	CSMD1	SNP	Silent	8	3855451	G	A	45	59
BRCA	TCGA-B6-A0I2	CEP110	SNP	Missense_Mutation	9	123935965	C	T	27	76
BRCA	TCGA-B6-A0I2	SMARCA2	SNP	Missense_Mutation	9	2076304	G	C	45	91
BRCA	TCGA-B6-A0I2	KIF27	SNP	Missense_Mutation	9	86503485	G	C	45	60
BRCA	TCGA-B6-A0I5	FLG	SNP	Missense_Mutation	1	152281273	G	T	46	49
BRCA	TCGA-B6-A0I5	MPP7	SNP	Missense_Mutation	10	28436429	A	G	10	69
BRCA	TCGA-B6-A0I5	GATA3	DEL	Splice_site	10	8115701	GATT	-	33	99
BRCA	TCGA-B6-A0I5	ABCC8	SNP	Splice_site	11	17434293	C	T	22	100
BRCA	TCGA-B6-A0I5	FADS2	SNP	Missense_Mutation	11	61607902	C	T	21	91
BRCA	TCGA-B6-A0I5	ABCD2	SNP	Missense_Mutation	12	39947886	C	T	27	76
BRCA	TCGA-B6-A0I5	CNP	SNP	Missense_Mutation	17	40123967	G	A	33	74
BRCA	TCGA-B6-A0I5	MYO5B	SNP	Silent	18	47373601	C	T	23	25
BRCA	TCGA-B6-A0I5	L3MBTL4	SNP	Silent	18	6171939	A	G	9	51
BRCA	TCGA-B6-A0I5	ANKRD12	SNP	Missense_Mutation	18	9258309	A	G	8	55
BRCA	TCGA-B6-A0I5	CRYGD	SNP	Silent	2	208988842	G	A	41	55
BRCA	TCGA-B6-A0I5	C20orf91	SNP	Missense_Mutation	20	26062002	G	C	33	51
BRCA	TCGA-B6-A0I5	KIAA1755	SNP	Silent	20	36856567	G	A	38	47
BRCA	TCGA-B6-A0I5	KIAA1644	SNP	Missense_Mutation	22	44681464	C	T	23	67
BRCA	TCGA-B6-A0I5	BCOR	SNP	Missense_Mutation	23	39923606	C	T	27	65
BRCA	TCGA-B6-A0I5	ZMYM3	SNP	Missense_Mutation	23	70464311	G	A	38	71
BRCA	TCGA-B6-A0I5	PIK3CA	SNP	Missense_Mutation	3	178936095	A	G	7	90
BRCA	TCGA-B6-A0I5	SFMBT1	SNP	Missense_Mutation	3	52954632	A	C	6	61
BRCA	TCGA-B6-A0I5	ZNF454	SNP	Missense_Mutation	5	178392823	G	C	48	93
BRCA	TCGA-B6-A0I5	MUC22	SNP	Silent	6	30997597	T	A	55	39
BRCA	TCGA-B6-A0I5	MLL3	INS	Splice_Site	7	151859199	-	A	61	57
BRCA	TCGA-B6-A0I5	PDAP1	SNP	Splice_site	7	98997926	C	T	23	95
BRCA	TCGA-B6-A0I5	PKHD1L1	SNP	Missense_Mutation	8	110442249	C	T	27	55
BRCA	TCGA-B6-A0I5	NEFM	SNP	Missense_Mutation	8	24774812	G	A	40	57
BRCA	TCGA-B6-A0I5	CSMD1	SNP	Silent	8	2823394	A	G	12	47
BRCA	TCGA-B6-A0I6	SARS	SNP	Missense_Mutation	1	109773582	T	G	57	90
BRCA	TCGA-B6-A0I6	HMGCS2	SNP	Missense_Mutation	1	120311433	A	G	7	69
BRCA	TCGA-B6-A0I6	TARS2	SNP	Silent	1	150471489	C	T	26	51
BRCA	TCGA-B6-A0I6	ITLN1	SNP	Silent	1	160851091	G	A	36	63
BRCA	TCGA-B6-A0I6	RXRG	SNP	Silent	1	165370566	G	A	45	61
BRCA	TCGA-B6-A0I6	HMCN1	SNP	Missense_Mutation	1	186057340	C	T	17	67
BRCA	TCGA-B6-A0I6	KIF21B	SNP	Missense_Mutation	1	200957999	T	A	58	90
BRCA	TCGA-B6-A0I6	ARID4B	SNP	Missense_Mutation	1	235392550	T	C	62	75
BRCA	TCGA-B6-A0I6	RLF	SNP	Missense_Mutation	1	40702980	A	G	12	57
BRCA	TCGA-B6-A0I6	EDN2	SNP	Missense_Mutation	1	41948218	C	G	23	66
BRCA	TCGA-B6-A0I6	ZSWIM5	SNP	Missense_Mutation	1	45553711	C	T	19	99
BRCA	TCGA-B6-A0I6	H6PD	SNP	Nonsense_Mutation	1	9305183	G	T	47	81
BRCA	TCGA-B6-A0I6	ZEB1	SNP	Missense_Mutation	10	31810284	C	A	17	68
BRCA	TCGA-B6-A0I6	LUZP2	SNP	Missense_Mutation	11	24750742	G	T	34	54
BRCA	TCGA-B6-A0I6	OR1S1	SNP	Silent	11	57983026	C	T	27	48
BRCA	TCGA-B6-A0I6	PYGM	SNP	Missense_Mutation	11	64518862	G	A	39	81
BRCA	TCGA-B6-A0I6	PC	SNP	Missense_Mutation	11	66638537	C	G	18	94
BRCA	TCGA-B6-A0I6	UCP2	SNP	Nonsense_Mutation	11	73686076	G	T	46	50
BRCA	TCGA-B6-A0I6	FAT3	SNP	Missense_Mutation	11	92538383	G	T	33	72
BRCA	TCGA-B6-A0I6	CCDC82	SNP	Silent	11	96117312	G	A	41	46
BRCA	TCGA-B6-A0I6	TCTN2	SNP	Missense_Mutation	12	124156618	C	T	23	72
BRCA	TCGA-B6-A0I6	PTPRO	SNP	Missense_Mutation	12	15673165	T	C	53	86
BRCA	TCGA-B6-A0I6	PDE3A	SNP	Missense_Mutation	12	20790155	G	A	42	94
BRCA	TCGA-B6-A0I6	KCNA6	SNP	Silent	12	4920089	C	T	17	69
BRCA	TCGA-B6-A0I6	GPD1	SNP	Missense_Mutation	12	50500636	C	T	17	100
BRCA	TCGA-B6-A0I6	DGKA	DEL	Frame_Shift_Del	12	56332737	TGAATACCTGGATTGGGA	-	55	41
BRCA	TCGA-B6-A0I6	KLHL33	SNP	Missense_Mutation	14	20898533	T	A	59	79
BRCA	TCGA-B6-A0I6	GOLGA6L2	SNP	Missense_Mutation	15	23685059	G	C	42	26
BRCA	TCGA-B6-A0I6	CELF6	SNP	Silent	15	72579624	A	G	8	57
BRCA	TCGA-B6-A0I6	ARID3B	SNP	Missense_Mutation	15	74836338	G	A	42	55
BRCA	TCGA-B6-A0I6	C15orf39	SNP	Missense_Mutation	15	75498847	G	T	35	60
BRCA	TCGA-B6-A0I6	CASKIN1	SNP	Missense_Mutation	16	2235149	C	A	22	75
BRCA	TCGA-B6-A0I6	NCOR1	SNP	Missense_Mutation	17	15965075	C	G	32	97
BRCA	TCGA-B6-A0I6	LRRC37A	SNP	Silent	17	44408126	G	A	42	54
BRCA	TCGA-B6-A0I6	VMP1	SNP	Silent	17	57915716	A	G	2	80
BRCA	TCGA-B6-A0I6	RNF213	SNP	Missense_Mutation	17	78362440	A	G	10	86
BRCA	TCGA-B6-A0I6	LAMA1	SNP	Missense_Mutation	18	6997880	C	G	17	86
BRCA	TCGA-B6-A0I6	IL12RB1	SNP	Nonsense_Mutation	19	18186625	G	A	40	42
BRCA	TCGA-B6-A0I6	ZNF808	DEL	Frame_Shift_Del	19	53056828	AAAAACAGGAAGTACACATGAGAGA	-	5	48
BRCA	TCGA-B6-A0I6	TTN	SNP	Missense_Mutation	2	179583919	A	T	8	27
BRCA	TCGA-B6-A0I6	CDK15	SNP	Missense_Mutation	2	202744849	A	T	16	61
BRCA	TCGA-B6-A0I6	GLB1L	SNP	Missense_Mutation	2	220101969	C	T	30	57
BRCA	TCGA-B6-A0I6	VIT	SNP	Missense_Mutation	2	36994266	C	A	18	45
BRCA	TCGA-B6-A0I6	THADA	SNP	Missense_Mutation	2	43793935	C	T	20	53
BRCA	TCGA-B6-A0I6	DNAH6	SNP	Missense_Mutation	2	84800708	C	G	18	85
BRCA	TCGA-B6-A0I6	LYG2	SNP	Missense_Mutation	2	99860525	T	A	60	47
BRCA	TCGA-B6-A0I6	ZNF335	SNP	Missense_Mutation	20	44587919	G	C	33	83
BRCA	TCGA-B6-A0I6	LOC100288117	SNP	Silent	21	20230229	G	C	35	88
BRCA	TCGA-B6-A0I6	CABIN1	SNP	Splice_site	22	24445682	G	A	47	81
BRCA	TCGA-B6-A0I6	MYO18B	SNP	Silent	22	26224905	C	T	24	59
BRCA	TCGA-B6-A0I6	APOL2	SNP	Missense_Mutation	22	36623937	C	A	23	46
BRCA	TCGA-B6-A0I6	PKDREJ	SNP	Silent	22	46654201	T	G	57	26
BRCA	TCGA-B6-A0I6	GABRA3	SNP	Missense_Mutation	23	151358338	G	A	40	94
BRCA	TCGA-B6-A0I6	MAGEB3	SNP	Silent	23	30254047	T	C	54	56
BRCA	TCGA-B6-A0I6	HUWE1	SNP	Missense_Mutation	23	53563526	C	G	17	82
BRCA	TCGA-B6-A0I6	MED12	SNP	Splice_site	23	70361814	A	G	15	82
BRCA	TCGA-B6-A0I6	KLHL4	SNP	Missense_Mutation	23	86880629	C	A	18	67
BRCA	TCGA-B6-A0I6	EFCAB12	SNP	Silent	3	129134218	C	T	24	49
BRCA	TCGA-B6-A0I6	COL6A5	SNP	Missense_Mutation	3	130142716	G	A	37	0
BRCA	TCGA-B6-A0I6	LRRC34	SNP	Missense_Mutation	3	169514046	G	C	36	36
BRCA	TCGA-B6-A0I6	SLC7A14	SNP	Missense_Mutation	3	170198759	C	T	29	78
BRCA	TCGA-B6-A0I6	PDZRN3	SNP	Silent	3	73657824	G	T	47	53
BRCA	TCGA-B6-A0I6	WHSC1	SNP	Missense_Mutation	4	1941401	G	A	46	74
BRCA	TCGA-B6-A0I6	ATP10D	SNP	Missense_Mutation	4	47593232	G	A	41	56
BRCA	TCGA-B6-A0I6	FAM53C	SNP	Missense_Mutation	5	137681244	C	T	19	39
BRCA	TCGA-B6-A0I6	DSE	SNP	Missense_Mutation	6	116757125	G	T	43	100
BRCA	TCGA-B6-A0I6	DST	SNP	Silent	6	56484032	T	A	53	45
BRCA	TCGA-B6-A0I6	SLC12A9	SNP	Silent	7	100456721	C	T	23	25
BRCA	TCGA-B6-A0I6	ENSG00000225705	SNP	Missense_Mutation	7	48886461	A	C	8	69
BRCA	TCGA-B6-A0I6	FGL2	SNP	Missense_Mutation	7	76825866	G	T	44	70
BRCA	TCGA-B6-A0I6	BMP1	SNP	Missense_Mutation	8	22037949	G	A	46	68
BRCA	TCGA-B6-A0I6	TEX15	SNP	Missense_Mutation	8	30704902	T	G	54	52
BRCA	TCGA-B6-A0I6	PRKDC	SNP	Missense_Mutation	8	48792059	A	T	8	67
BRCA	TCGA-B6-A0I6	MATN2	SNP	Missense_Mutation	8	98943194	G	T	33	50
BRCA	TCGA-B6-A0I6	TBC1D2	SNP	Missense_Mutation	9	100961795	G	T	44	60
BRCA	TCGA-B6-A0I6	CRAT	SNP	Missense_Mutation	9	131866570	G	A	34	71
BRCA	TCGA-B6-A0I6	LCN8	SNP	Silent	9	139651510	G	C	39	49
BRCA	TCGA-B6-A0I6	LOC100288765	SNP	Missense_Mutation	9	69846251	G	C	33	76
BRCA	TCGA-B6-A0I8	GPR61	SNP	Silent	1	110086349	C	G	22	48
BRCA	TCGA-B6-A0I8	MOV10	SNP	Missense_Mutation	1	113239380	G	A	41	100
BRCA	TCGA-B6-A0I8	YY1AP1	SNP	Missense_Mutation	1	155638533	G	C	36	77
BRCA	TCGA-B6-A0I8	SLC25A44	SNP	Silent	1	156169758	C	A	29	59
BRCA	TCGA-B6-A0I8	IQGAP3	SNP	Missense_Mutation	1	156502784	C	T	28	68
BRCA	TCGA-B6-A0I8	NTRK1	SNP	Missense_Mutation	1	156848984	C	A	25	94
BRCA	TCGA-B6-A0I8	SPTA1	SNP	Missense_Mutation	1	158606472	G	A	40	74
BRCA	TCGA-B6-A0I8	GPR161	SNP	Missense_Mutation	1	168066094	T	C	55	92
BRCA	TCGA-B6-A0I8	METTL11B	SNP	Missense_Mutation	1	170136716	G	T	48	79
BRCA	TCGA-B6-A0I8	METTL13	SNP	Silent	1	171763540	G	A	42	50
BRCA	TCGA-B6-A0I8	ASTN1	SNP	Silent	1	177133537	G	A	37	64
BRCA	TCGA-B6-A0I8	NAV1	SNP	Missense_Mutation	1	201618306	G	T	34	59
BRCA	TCGA-B6-A0I8	ROR1	SNP	Missense_Mutation	1	64515405	C	T	19	87
BRCA	TCGA-B6-A0I8	SEMA4G	SNP	Missense_Mutation	10	102740951	G	C	33	58
BRCA	TCGA-B6-A0I8	ARHGAP12	SNP	Missense_Mutation	10	32197724	T	A	52	50
BRCA	TCGA-B6-A0I8	TMEM72	INS	Frame_Shift_Ins	10	45430274	-	TTTTTCCATGGAGGTTTTTC	42	53
BRCA	TCGA-B6-A0I8	ANK3	SNP	Missense_Mutation	10	61832621	G	A	47	100
BRCA	TCGA-B6-A0I8	PRF1	SNP	Silent	10	72360527	G	A	39	22
BRCA	TCGA-B6-A0I8	ATP5C1	DEL	In_Frame_Del	10	7841091	TAACAGCAGCTGGGAAAG	-	53	90
BRCA	TCGA-B6-A0I8	ZBED5	DEL	Frame_Shift_Del	11	10876310	ATTTGATTCAGACACA	-	8	49
BRCA	TCGA-B6-A0I8	SYT8	DEL	Frame_Shift_Del	11	1857139	G	-	47	61
BRCA	TCGA-B6-A0I8	MADD	SNP	Missense_Mutation	11	47331104	G	A	45	95
BRCA	TCGA-B6-A0I8	CATSPER1	SNP	Missense_Mutation	11	65792950	G	C	45	47
BRCA	TCGA-B6-A0I8	LRRK2	SNP	Missense_Mutation	12	40757328	G	A	47	71
BRCA	TCGA-B6-A0I8	FAM186A	SNP	Missense_Mutation	12	50744938	T	A	59	40
BRCA	TCGA-B6-A0I8	LOC100287535	SNP	Missense_Mutation	12	8371816	T	A	58	51
BRCA	TCGA-B6-A0I8	UTP14C	SNP	Missense_Mutation	13	52605143	G	T	41	82
BRCA	TCGA-B6-A0I8	NPAS3	DEL	Frame_Shift_Del	14	34243697	GAGTAAATAT	-	37	100
BRCA	TCGA-B6-A0I8	MDGA2	SNP	Silent	14	47530633	T	A	51	44
BRCA	TCGA-B6-A0I8	KCNH5	SNP	Silent	14	63473181	A	G	8	54
BRCA	TCGA-B6-A0I8	SLC10A1	SNP	Missense_Mutation	14	70245196	C	T	17	98
BRCA	TCGA-B6-A0I8	GOLGA6L2	SNP	Missense_Mutation	15	23685820	G	T	46	NaN
BRCA	TCGA-B6-A0I8	ATP8B4	SNP	Missense_Mutation	15	50264841	G	A	40	81
BRCA	TCGA-B6-A0I8	DIS3L	SNP	Missense_Mutation	15	66587367	C	G	22	92
BRCA	TCGA-B6-A0I8	KIAA0430	SNP	Missense_Mutation	16	15692831	C	T	19	64
BRCA	TCGA-B6-A0I8	GGA2	SNP	Missense_Mutation	16	23492053	C	T	20	74
BRCA	TCGA-B6-A0I8	ERN2	SNP	Missense_Mutation	16	23706244	G	T	44	68
BRCA	TCGA-B6-A0I8	AMDHD2	SNP	Missense_Mutation	16	2580462	T	G	55	50
BRCA	TCGA-B6-A0I8	LONP2	SNP	Missense_Mutation	16	48295483	T	G	58	77
BRCA	TCGA-B6-A0I8	NCOR1	SNP	Nonsense_Mutation	17	15943800	G	A	45	93
BRCA	TCGA-B6-A0I8	SGK494	SNP	Nonsense_Mutation	17	26938416	C	A	21	95
BRCA	TCGA-B6-A0I8	MRPL45	SNP	Silent	17	36474595	T	C	51	56
BRCA	TCGA-B6-A0I8	GPATCH8	SNP	Missense_Mutation	17	42477506	G	T	42	68
BRCA	TCGA-B6-A0I8	TEX14	SNP	Missense_Mutation	17	56700371	C	G	27	86
BRCA	TCGA-B6-A0I8	GDPD1	SNP	Silent	17	57352538	G	A	47	50
BRCA	TCGA-B6-A0I8	VMP1	SNP	Silent	17	57917167	C	G	31	41
BRCA	TCGA-B6-A0I8	HELZ	SNP	Missense_Mutation	17	65105258	G	A	37	73
BRCA	TCGA-B6-A0I8	OTOP2	SNP	Missense_Mutation	17	72927076	C	G	18	55
BRCA	TCGA-B6-A0I8	POTEC	SNP	Missense_Mutation	18	14542680	C	A	30	47
BRCA	TCGA-B6-A0I8	ZNF236	SNP	Silent	18	74631946	C	T	19	28
BRCA	TCGA-B6-A0I8	COL5A3	SNP	Silent	19	10088137	G	A	42	22
BRCA	TCGA-B6-A0I8	OR7A10	DEL	Frame_Shift_Del	19	14952138	CACCTGATTAATTT	-	21	44
BRCA	TCGA-B6-A0I8	CPAMD8	SNP	Missense_Mutation	19	17057997	A	T	2	85
BRCA	TCGA-B6-A0I8	PDCD2L	SNP	Silent	19	34900086	A	C	7	46
BRCA	TCGA-B6-A0I8	NPHS1	SNP	Missense_Mutation	19	36330494	G	C	47	85
BRCA	TCGA-B6-A0I8	PSMC4	SNP	Missense_Mutation	19	40480261	C	T	26	93
BRCA	TCGA-B6-A0I8	NLRP9	SNP	Missense_Mutation	19	56244140	T	C	54	59
BRCA	TCGA-B6-A0I8	ZNF749	SNP	Silent	19	57953288	C	T	32	54
BRCA	TCGA-B6-A0I8	MUC16	SNP	Silent	19	9065990	A	G	11	44
BRCA	TCGA-B6-A0I8	IL1R2	DEL	Frame_Shift_Del	2	102642664	GTTGTCCATAATACCCTGA	-	48	41
BRCA	TCGA-B6-A0I8	ZRANB3	SNP	Silent	2	136023137	A	C	7	48
BRCA	TCGA-B6-A0I8	MYCN	SNP	Missense_Mutation	2	16086025	T	A	56	91
BRCA	TCGA-B6-A0I8	ATF2	SNP	Missense_Mutation	2	175939354	G	T	48	94
BRCA	TCGA-B6-A0I8	TTN	SNP	Missense_Mutation	2	179449278	C	G	31	72
BRCA	TCGA-B6-A0I8	TTN	DEL	Frame_Shift_Del	2	179597176	ACAAGTTTGC	-	2	91
BRCA	TCGA-B6-A0I8	ZC3H15	SNP	Missense_Mutation	2	187370515	G	A	45	100
BRCA	TCGA-B6-A0I8	ANKAR	SNP	Missense_Mutation	2	190602506	C	G	32	74
BRCA	TCGA-B6-A0I8	MAP2	SNP	Missense_Mutation	2	210559945	G	T	35	53
BRCA	TCGA-B6-A0I8	FAM228A	SNP	Nonsense_Mutation	2	24406369	C	T	19	44
BRCA	TCGA-B6-A0I8	DNAJC27	SNP	Splice_Site	2	25174424	C	G	32	100
BRCA	TCGA-B6-A0I8	TSSC1	SNP	Missense_Mutation	2	3261182	G	A	42	99
BRCA	TCGA-B6-A0I8	FAM98A	DEL	Splice_Site	2	33810513	T	-	53	90
BRCA	TCGA-B6-A0I8	ATL2	SNP	Silent	2	38527429	T	C	63	49
BRCA	TCGA-B6-A0I8	CEP68	SNP	Missense_Mutation	2	65299440	C	G	22	50
BRCA	TCGA-B6-A0I8	PMEPA1	SNP	Missense_Mutation	20	56227380	T	A	50	71
BRCA	TCGA-B6-A0I8	PMEPA1	DEL	In_Frame_Del	20	56227388	GTCACT	-	44	78
BRCA	TCGA-B6-A0I8	CHGB	SNP	Missense_Mutation	20	5904091	C	A	18	45
BRCA	TCGA-B6-A0I8	CLDN17	SNP	Silent	21	31538837	T	A	55	38
BRCA	TCGA-B6-A0I8	ERG	SNP	Silent	21	39817428	G	C	47	59
BRCA	TCGA-B6-A0I8	IGSF5	SNP	Missense_Mutation	21	41142941	G	T	41	48
BRCA	TCGA-B6-A0I8	MYH9	SNP	Silent	22	36681952	C	G	22	54
BRCA	TCGA-B6-A0I8	NXF5	SNP	Splice_Site	23	101092628	T	C	53	74
BRCA	TCGA-B6-A0I8	RAB40A	SNP	Missense_Mutation	23	102755666	G	T	43	69
BRCA	TCGA-B6-A0I8	TRPC5	SNP	Missense_Mutation	23	111155910	C	A	23	81
BRCA	TCGA-B6-A0I8	LHFPL1	SNP	Missense_Mutation	23	111874827	T	C	57	67
BRCA	TCGA-B6-A0I8	ZCCHC12	DEL	Frame_Shift_Del	23	117959219	CATTGCAC	-	29	55
BRCA	TCGA-B6-A0I8	RENBP	SNP	Silent	23	153209420	T	C	49	35
BRCA	TCGA-B6-A0I8	F8	SNP	Silent	23	154091404	G	A	46	53
BRCA	TCGA-B6-A0I8	ASMTL	SNP	Silent	23	1554633	G	A	33	53
BRCA	TCGA-B6-A0I8	YY2	SNP	Silent	23	21875634	C	G	24	41
BRCA	TCGA-B6-A0I8	RPGR	SNP	Missense_Mutation	23	38144855	C	A	23	54
BRCA	TCGA-B6-A0I8	CDK16	SNP	Missense_Mutation	23	47083105	G	A	40	54
BRCA	TCGA-B6-A0I8	LAS1L	SNP	Silent	23	64732757	G	A	37	47
BRCA	TCGA-B6-A0I8	PLCH1	SNP	Missense_Mutation	3	155212270	C	G	32	87
BRCA	TCGA-B6-A0I8	MUC4	SNP	Missense_Mutation	3	195507242	C	A	28	39
BRCA	TCGA-B6-A0I8	DUSP7	SNP	Silent	3	52088044	G	A	38	32
BRCA	TCGA-B6-A0I8	DNAH12	SNP	Missense_Mutation	3	57343879	G	C	36	100
BRCA	TCGA-B6-A0I8	PTPRG	SNP	Missense_Mutation	3	62259418	G	A	47	73
BRCA	TCGA-B6-A0I8	UGT8	DEL	Frame_Shift_Del	4	115586909	C	-	28	71
BRCA	TCGA-B6-A0I8	UGT8	DEL	Splice_site	4	115586911	TGGTAA	-	63	39
BRCA	TCGA-B6-A0I8	HPSE	SNP	Missense_Mutation	4	84227420	A	T	8	87
BRCA	TCGA-B6-A0I8	IL17B	SNP	Missense_Mutation	5	148756510	G	A	38	52
BRCA	TCGA-B6-A0I8	GRIA1	SNP	Silent	5	153030053	C	A	26	51
BRCA	TCGA-B6-A0I8	COL23A1	DEL	Frame_Shift_Del	5	177697319	TTGCCCTGTCATCACTTACGGGC	-	52	45
BRCA	TCGA-B6-A0I8	IRX2	SNP	Missense_Mutation	5	2748681	G	T	43	84
BRCA	TCGA-B6-A0I8	HIVEP2	SNP	Silent	6	143074259	C	T	32	61
BRCA	TCGA-B6-A0I8	SLC17A3	SNP	Missense_Mutation	6	25850741	C	A	21	47
BRCA	TCGA-B6-A0I8	MDC1	SNP	Missense_Mutation	6	30675432	T	G	58	45
BRCA	TCGA-B6-A0I8	ABCC10	SNP	Missense_Mutation	6	43417235	C	T	19	61
BRCA	TCGA-B6-A0I8	PKHD1	SNP	Missense_Mutation	6	51824744	G	T	48	72
BRCA	TCGA-B6-A0I8	CPED1	SNP	Missense_Mutation	7	120737791	C	A	29	58
BRCA	TCGA-B6-A0I8	FLNC	SNP	Missense_Mutation	7	128482326	C	A	19	32
BRCA	TCGA-B6-A0I8	MLL3	SNP	Missense_Mutation	7	151917808	G	C	36	94
BRCA	TCGA-B6-A0I8	HIP1	SNP	Missense_Mutation	7	75174474	G	C	43	71
BRCA	TCGA-B6-A0I8	SGCE	SNP	Missense_Mutation	7	94232698	C	G	32	52
BRCA	TCGA-B6-A0I8	PPP1R9A	SNP	Silent	7	94898626	G	A	39	34
BRCA	TCGA-B6-A0I8	TEX15	DEL	Frame_Shift_Del	8	30701687	TTAGC	-	52	70
BRCA	TCGA-B6-A0I8	ARFGEF1	SNP	Silent	8	68189547	A	G	16	65
BRCA	TCGA-B6-A0I8	SLC31A1	SNP	Missense_Mutation	9	116021131	C	G	17	63
BRCA	TCGA-B6-A0I8	ASTN2	SNP	Missense_Mutation	9	119903677	C	T	31	80
BRCA	TCGA-B6-A0I8	CDK5RAP2	SNP	Silent	9	123201946	T	C	56	53
BRCA	TCGA-B6-A0I8	ZNF658	SNP	Missense_Mutation	9	40774719	C	G	32	66
BRCA	TCGA-B6-A0I9	IVNS1ABP	DEL	Frame_Shift_Del	1	185269464	AT	-	8	60
BRCA	TCGA-B6-A0I9	GJA9	SNP	Missense_Mutation	1	39340570	T	C	51	44
BRCA	TCGA-B6-A0I9	PARS2	SNP	Missense_Mutation	1	55224704	C	T	19	61
BRCA	TCGA-B6-A0I9	KANK4	SNP	Missense_Mutation	1	62734091	T	C	58	54
BRCA	TCGA-B6-A0I9	ABCA4	SNP	Missense_Mutation	1	94505646	G	A	40	53
BRCA	TCGA-B6-A0I9	KCNK18	SNP	Missense_Mutation	10	118969429	G	T	47	39
BRCA	TCGA-B6-A0I9	FAM171A1	DEL	Frame_Shift_Del	10	15325912	G	-	47	96
BRCA	TCGA-B6-A0I9	C10orf128	SNP	Missense_Mutation	10	50369647	T	G	64	55
BRCA	TCGA-B6-A0I9	MYPN	SNP	Missense_Mutation	10	69948709	G	C	36	59
BRCA	TCGA-B6-A0I9	IGSF9B	SNP	Nonsense_Mutation	11	133801654	G	A	37	95
BRCA	TCGA-B6-A0I9	ENSG00000205046	SNP	Silent	11	51459467	G	A	45	53
BRCA	TCGA-B6-A0I9	OR5D14	SNP	Missense_Mutation	11	55563102	A	T	3	69
BRCA	TCGA-B6-A0I9	OR2D3	SNP	Missense_Mutation	11	6943082	A	G	1	62
BRCA	TCGA-B6-A0I9	MRE11A	SNP	Silent	11	94194141	T	C	53	49
BRCA	TCGA-B6-A0I9	RNF10	SNP	Missense_Mutation	12	121002888	G	A	40	88
BRCA	TCGA-B6-A0I9	ITPR2	SNP	Missense_Mutation	12	26752146	A	T	2	89
BRCA	TCGA-B6-A0I9	PHC1B	SNP	Missense_Mutation	12	55805942	C	T	27	58
BRCA	TCGA-B6-A0I9	CHD4	SNP	Silent	12	6696712	T	C	56	53
BRCA	TCGA-B6-A0I9	TMTC4	SNP	Missense_Mutation	13	101288959	C	A	29	73
BRCA	TCGA-B6-A0I9	ATP7B	SNP	Missense_Mutation	13	52508972	G	A	37	58
BRCA	TCGA-B6-A0I9	RBM26	SNP	Silent	13	79911273	C	T	23	46
BRCA	TCGA-B6-A0I9	MLH3	SNP	Missense_Mutation	14	75498872	C	G	32	63
BRCA	TCGA-B6-A0I9	ATP10A	SNP	Missense_Mutation	15	25925334	G	T	42	54
BRCA	TCGA-B6-A0I9	FAN1	SNP	Silent	15	31202935	C	T	19	47
BRCA	TCGA-B6-A0I9	ADAMTSL3	SNP	Silent	15	84651068	G	A	38	47
BRCA	TCGA-B6-A0I9	SRCAP	SNP	Missense_Mutation	16	30750833	C	G	17	82
BRCA	TCGA-B6-A0I9	IL34	SNP	Missense_Mutation	16	70690933	C	T	31	49
BRCA	TCGA-B6-A0I9	HYDIN	SNP	Missense_Mutation	16	71103181	C	A	25	50
BRCA	TCGA-B6-A0I9	TBC1D28	SNP	Missense_Mutation	17	18544650	C	T	30	61
BRCA	TCGA-B6-A0I9	PELP1	SNP	Missense_Mutation	17	4576579	G	A	42	70
BRCA	TCGA-B6-A0I9	OTOP2	SNP	Missense_Mutation	17	72929557	A	T	8	61
BRCA	TCGA-B6-A0I9	TP53	SNP	Missense_Mutation	17	7578526	C	T	25	97
BRCA	TCGA-B6-A0I9	DLGAP1	SNP	Missense_Mutation	18	3567558	C	A	29	80
BRCA	TCGA-B6-A0I9	SERPINB3	SNP	Missense_Mutation	18	61322965	G	C	45	91
BRCA	TCGA-B6-A0I9	CTDP1	SNP	Missense_Mutation	18	77475211	C	T	19	53
BRCA	TCGA-B6-A0I9	DNASE2	DEL	Frame_Shift_Del	19	12989580	C	-	26	58
BRCA	TCGA-B6-A0I9	AURKC	SNP	Splice_Site	19	57743593	G	C	36	86
BRCA	TCGA-B6-A0I9	OR1M1	SNP	Nonsense_Mutation	19	9204487	C	A	25	53
BRCA	TCGA-B6-A0I9	TMEM182	SNP	Splice_Site	2	103414461	T	C	57	86
BRCA	TCGA-B6-A0I9	SP3	SNP	Missense_Mutation	2	174820722	A	C	16	91
BRCA	TCGA-B6-A0I9	TTN	SNP	Missense_Mutation	2	179641907	T	A	51	93
BRCA	TCGA-B6-A0I9	STAT4	SNP	Silent	2	191896229	T	A	55	53
BRCA	TCGA-B6-A0I9	CST7	SNP	Silent	20	24930099	C	T	19	49
BRCA	TCGA-B6-A0I9	FBXO7	SNP	Silent	22	32881084	G	A	39	21
BRCA	TCGA-B6-A0I9	CT47B1	SNP	Missense_Mutation	23	120009253	G	A	40	45
BRCA	TCGA-B6-A0I9	STAG2	SNP	Missense_Mutation	23	123195113	G	A	41	98
BRCA	TCGA-B6-A0I9	NSDHL	SNP	Nonsense_Mutation	23	152036194	C	T	23	50
BRCA	TCGA-B6-A0I9	MECP2	SNP	Silent	23	153296841	G	A	38	52
BRCA	TCGA-B6-A0I9	PRICKLE3	SNP	Missense_Mutation	23	49032341	C	T	19	50
BRCA	TCGA-B6-A0I9	TRO	SNP	Missense_Mutation	23	54955699	G	A	47	54
BRCA	TCGA-B6-A0I9	DNAJC13	SNP	Silent	3	132245098	G	A	33	63
BRCA	TCGA-B6-A0I9	UGT8	SNP	Silent	4	115544067	C	T	24	91
BRCA	TCGA-B6-A0I9	EVC2	SNP	Missense_Mutation	4	5624559	G	A	33	63
BRCA	TCGA-B6-A0I9	ADAMTS12	SNP	Missense_Mutation	5	33642057	A	T	6	93
BRCA	TCGA-B6-A0I9	PRDM1	SNP	Missense_Mutation	6	106547224	A	G	11	65
BRCA	TCGA-B6-A0I9	UTRN	SNP	Missense_Mutation	6	144832252	C	G	18	97
BRCA	TCGA-B6-A0I9	PARK2	SNP	Missense_Mutation	6	161781222	C	T	29	58
BRCA	TCGA-B6-A0I9	UNC93A	SNP	Missense_Mutation	6	167709557	G	A	39	81
BRCA	TCGA-B6-A0I9	NPY	SNP	Splice_site	7	24331283	C	T	28	64
BRCA	TCGA-B6-A0I9	CHN2	SNP	Missense_Mutation	7	29407574	C	T	31	57
BRCA	TCGA-B6-A0I9	ABCA13	SNP	Missense_Mutation	7	48390275	G	A	38	55
BRCA	TCGA-B6-A0I9	STAG3L3	SNP	Silent	7	72470053	G	T	45	47
BRCA	TCGA-B6-A0I9	KCNQ3	SNP	Missense_Mutation	8	133187705	C	G	22	100
BRCA	TCGA-B6-A0I9	LYN	SNP	Missense_Mutation	8	56922638	C	A	26	89
BRCA	TCGA-B6-A0I9	VCPIP1	SNP	Silent	8	67547342	G	A	40	53
BRCA	TCGA-B6-A0I9	FAM82B	SNP	Nonsense_Mutation	8	87498796	C	A	30	65
BRCA	TCGA-B6-A0I9	CDK5RAP2	SNP	Missense_Mutation	9	123232463	A	C	13	73
BRCA	TCGA-B6-A0I9	MPDZ	DEL	Frame_Shift_Del	9	13206024	CA	-	25	52
BRCA	TCGA-B6-A0I9	CAMSAP1	SNP	Missense_Mutation	9	138714775	C	T	24	61
BRCA	TCGA-B6-A0IA	GPSM2	SNP	Missense_Mutation	1	109444429	C	T	26	100
BRCA	TCGA-B6-A0IA	NBPF12	SNP	Missense_Mutation	1	146403703	T	G	53	50
BRCA	TCGA-B6-A0IA	ATP1B1	SNP	Silent	1	169076073	C	G	22	50
BRCA	TCGA-B6-A0IA	MMEL1	INS	Frame_Shift_Ins	1	2524333	-	C	55	75
BRCA	TCGA-B6-A0IA	LDHC	SNP	Missense_Mutation	11	18456442	G	A	33	98
BRCA	TCGA-B6-A0IA	WSCD2	SNP	Missense_Mutation	12	108603963	C	T	19	80
BRCA	TCGA-B6-A0IA	CACNA1C	SNP	Silent	12	2676748	G	A	35	61
BRCA	TCGA-B6-A0IA	ZWILCH	SNP	Missense_Mutation	15	66821838	T	A	52	57
BRCA	TCGA-B6-A0IA	TTN	DEL	Frame_Shift_Del	2	179397545	T	-	50	53
BRCA	TCGA-B6-A0IA	AFTPH	SNP	Missense_Mutation	2	64779110	T	G	60	54
BRCA	TCGA-B6-A0IA	C20orf79	SNP	Missense_Mutation	20	18794881	T	C	55	64
BRCA	TCGA-B6-A0IA	PRR23C	SNP	Silent	3	138762902	G	A	42	47
BRCA	TCGA-B6-A0IA	NEIL3	SNP	Silent	4	178274553	C	T	29	44
BRCA	TCGA-B6-A0IA	TIGD2	SNP	Missense_Mutation	4	90034880	A	G	5	76
BRCA	TCGA-B6-A0IA	PCDHB3	SNP	Silent	5	140481610	C	T	31	43
BRCA	TCGA-B6-A0IA	PCDHB12	SNP	Missense_Mutation	5	140590839	C	T	22	42
BRCA	TCGA-B6-A0IA	GRM6	SNP	Silent	5	178413950	G	A	40	38
BRCA	TCGA-B6-A0IA	SIM1	SNP	Missense_Mutation	6	100895183	G	A	41	89
BRCA	TCGA-B6-A0IA	BTN2A3	SNP	Missense_Mutation	6	26426628	G	A	38	44
BRCA	TCGA-B6-A0IA	LRP12	SNP	Missense_Mutation	8	105509765	C	T	25	77
BRCA	TCGA-B6-A0IA	CDCA2	SNP	Silent	8	25360909	G	A	33	57
BRCA	TCGA-B6-A0IA	CNGB3	SNP	Silent	8	87623885	C	T	32	78
BRCA	TCGA-B6-A0IA	FAM219A	SNP	Missense_Mutation	9	34401098	A	G	12	76
BRCA	TCGA-B6-A0IB	ATP1A1	SNP	Missense_Mutation	1	116936238	G	A	46	98
BRCA	TCGA-B6-A0IB	ENSA	SNP	Missense_Mutation	1	150600017	G	C	34	73
BRCA	TCGA-B6-A0IB	NFASC	SNP	Missense_Mutation	1	204938069	A	G	3	66
BRCA	TCGA-B6-A0IB	PROX1	SNP	Missense_Mutation	1	214170689	G	T	33	87
BRCA	TCGA-B6-A0IB	CDC42BPA	SNP	Missense_Mutation	1	227182616	G	A	38	72
BRCA	TCGA-B6-A0IB	ZNF238	SNP	Missense_Mutation	1	244218061	G	T	41	100
BRCA	TCGA-B6-A0IB	PTEN	SNP	Splice_Site	10	89711873	A	G	7	90
BRCA	TCGA-B6-A0IB	SLCO1A2	SNP	Missense_Mutation	12	21445147	T	C	55	57
BRCA	TCGA-B6-A0IB	TMTC3	SNP	Missense_Mutation	12	88589349	A	G	8	76
BRCA	TCGA-B6-A0IB	GRK1	SNP	Missense_Mutation	13	114321757	G	A	37	95
BRCA	TCGA-B6-A0IB	ENSG00000211794	SNP	Silent	14	22434289	C	T	27	49
BRCA	TCGA-B6-A0IB	ZFP36L1	DEL	Frame_Shift_Del	14	69257027	GCTCAGAGCGGGG	-	34	57
BRCA	TCGA-B6-A0IB	C14orf43	DEL	Frame_Shift_Del	14	74205696	T	-	55	60
BRCA	TCGA-B6-A0IB	ZC2HC1C	SNP	Missense_Mutation	14	75537877	G	A	42	49
BRCA	TCGA-B6-A0IB	SPTBN5	DEL	Frame_Shift_Del	15	42144894	G	-	47	48
BRCA	TCGA-B6-A0IB	RSL1D1	SNP	Missense_Mutation	16	11940376	G	A	33	73
BRCA	TCGA-B6-A0IB	CETP	SNP	Splice_site	16	57009014	C	T	25	48
BRCA	TCGA-B6-A0IB	FAM96B	SNP	Missense_Mutation	16	66967614	A	C	6	74
BRCA	TCGA-B6-A0IB	ANKRD11	SNP	Nonsense_Mutation	16	89347633	C	A	30	92
BRCA	TCGA-B6-A0IB	MAP2K4	INS	Splice_Site	17	11958309	-	T	48	92
BRCA	TCGA-B6-A0IB	NF1	SNP	Missense_Mutation	17	29657384	G	C	33	99
BRCA	TCGA-B6-A0IB	NLRP1	SNP	Nonsense_Mutation	17	5418124	C	A	30	64
BRCA	TCGA-B6-A0IB	SLC9A3R1	SNP	Missense_Mutation	17	72764791	T	C	54	87
BRCA	TCGA-B6-A0IB	ZCCHC2	SNP	Silent	18	60242257	G	A	38	32
BRCA	TCGA-B6-A0IB	HNRNPUL1	SNP	Missense_Mutation	19	41811615	G	C	44	62
BRCA	TCGA-B6-A0IB	PHLDB3	SNP	Missense_Mutation	19	44006351	G	A	38	64
BRCA	TCGA-B6-A0IB	PNMAL2	SNP	Missense_Mutation	19	46997335	A	C	6	49
BRCA	TCGA-B6-A0IB	ENSG00000171101	SNP	Missense_Mutation	19	51671571	C	T	19	31
BRCA	TCGA-B6-A0IB	CEACAM18	SNP	Silent	19	51984819	C	G	29	56
BRCA	TCGA-B6-A0IB	DPP4	SNP	Missense_Mutation	2	162875265	G	A	38	82
BRCA	TCGA-B6-A0IB	HIBCH	SNP	Missense_Mutation	2	191069855	A	C	4	59
BRCA	TCGA-B6-A0IB	PCYOX1	SNP	Silent	2	70503936	C	T	31	42
BRCA	TCGA-B6-A0IB	POLR3F	DEL	Frame_Shift_Del	20	18462391	C	-	17	52
BRCA	TCGA-B6-A0IB	COL20A1	INS	Frame_Shift_Ins	20	61959802	-	T	24	41
BRCA	TCGA-B6-A0IB	GAB4	SNP	Missense_Mutation	22	17451008	C	A	28	57
BRCA	TCGA-B6-A0IB	CACNG2	SNP	Missense_Mutation	22	36983554	C	T	32	90
BRCA	TCGA-B6-A0IB	GPRASP2	SNP	Missense_Mutation	23	101971946	G	T	46	54
BRCA	TCGA-B6-A0IB	RGAG1	SNP	Missense_Mutation	23	109694759	G	T	41	50
BRCA	TCGA-B6-A0IB	G6PD	SNP	Missense_Mutation	23	153761880	C	T	19	91
BRCA	TCGA-B6-A0IB	TIPARP	SNP	Missense_Mutation	3	156395929	G	T	36	52
BRCA	TCGA-B6-A0IB	GP5	SNP	Silent	3	194117824	G	A	48	65
BRCA	TCGA-B6-A0IB	UBA7	SNP	Missense_Mutation	3	49847490	G	A	45	55
BRCA	TCGA-B6-A0IB	ENSG00000187900	SNP	Missense_Mutation	3	97957599	T	C	52	60
BRCA	TCGA-B6-A0IB	H2AFZ	SNP	Missense_Mutation	4	100870877	C	G	24	63
BRCA	TCGA-B6-A0IB	FGG	SNP	Missense_Mutation	4	155533328	C	T	26	96
BRCA	TCGA-B6-A0IB	LRP2BP	SNP	Silent	4	186296782	C	T	30	52
BRCA	TCGA-B6-A0IB	MXD4	SNP	Missense_Mutation	4	2252287	C	T	27	54
BRCA	TCGA-B6-A0IB	NIPAL4	SNP	Silent	5	156899539	G	A	38	35
BRCA	TCGA-B6-A0IB	RAB3C	SNP	Missense_Mutation	5	57913553	C	G	31	47
BRCA	TCGA-B6-A0IB	ANKRD32	SNP	Missense_Mutation	5	94014648	C	G	32	53
BRCA	TCGA-B6-A0IB	DNAH8	SNP	Missense_Mutation	6	38863942	G	A	33	99
BRCA	TCGA-B6-A0IB	PTK7	SNP	Missense_Mutation	6	43107257	C	T	19	71
BRCA	TCGA-B6-A0IB	LMBRD1	SNP	Missense_Mutation	6	70428924	C	T	28	58
BRCA	TCGA-B6-A0IB	AEBP1	SNP	Missense_Mutation	7	44150707	T	G	59	50
BRCA	TCGA-B6-A0IB	ABCB1	SNP	Silent	7	87175263	G	A	37	55
BRCA	TCGA-B6-A0IC	MFN2	SNP	Missense_Mutation	1	12062055	C	A	32	96
BRCA	TCGA-B6-A0IC	PRPF3	SNP	Missense_Mutation	1	150307447	T	C	50	94
BRCA	TCGA-B6-A0IC	FCRL1	SNP	Missense_Mutation	1	157767580	C	T	26	50
BRCA	TCGA-B6-A0IC	CEP350	DEL	Frame_Shift_Del	1	180047729	G	-	35	63
BRCA	TCGA-B6-A0IC	LMOD1	SNP	Silent	1	201869751	T	C	61	49
BRCA	TCGA-B6-A0IC	ZFYVE9	DEL	Frame_Shift_Del	1	52704506	TATC	-	61	52
BRCA	TCGA-B6-A0IC	PCDH15	SNP	Missense_Mutation	10	55912885	C	A	30	96
BRCA	TCGA-B6-A0IC	PTPN5	SNP	Splice_site	11	18764870	G	A	40	35
BRCA	TCGA-B6-A0IC	SLC5A12	SNP	Silent	11	26725447	G	A	45	50
BRCA	TCGA-B6-A0IC	WSCD2	SNP	Missense_Mutation	12	108642028	C	A	25	67
BRCA	TCGA-B6-A0IC	DUSP16	INS	Frame_Shift_Ins	12	12630859	-	G	7	43
BRCA	TCGA-B6-A0IC	KRT1	SNP	Missense_Mutation	12	53070227	G	A	42	84
BRCA	TCGA-B6-A0IC	A2M	INS	Silent	12	9220358	-	T	40	39
BRCA	TCGA-B6-A0IC	KL	SNP	Missense_Mutation	13	33629465	A	T	10	45
BRCA	TCGA-B6-A0IC	OLFM4	SNP	Missense_Mutation	13	53624378	C	A	17	35
BRCA	TCGA-B6-A0IC	DNAH3	SNP	Silent	16	21115812	T	C	55	49
BRCA	TCGA-B6-A0IC	SMCR8	SNP	Missense_Mutation	17	18220579	C	A	26	66
BRCA	TCGA-B6-A0IC	SLC13A2	SNP	Silent	17	26817851	C	T	19	21
BRCA	TCGA-B6-A0IC	ANO8	DEL	Frame_Shift_Del	19	17436073	CT	-	24	50
BRCA	TCGA-B6-A0IC	ARHGAP35	SNP	Missense_Mutation	19	47492897	C	T	23	95
BRCA	TCGA-B6-A0IC	TTL	SNP	Missense_Mutation	2	113277954	A	G	11	64
BRCA	TCGA-B6-A0IC	SATB2	SNP	Missense_Mutation	2	200137254	T	A	50	92
BRCA	TCGA-B6-A0IC	DSCAM	SNP	Missense_Mutation	21	41427655	T	C	51	67
BRCA	TCGA-B6-A0IC	ZNF74	SNP	Missense_Mutation	22	20759967	C	G	27	44
BRCA	TCGA-B6-A0IC	FRMPD4	SNP	Missense_Mutation	23	12734333	C	A	25	54
BRCA	TCGA-B6-A0IC	NAA10	SNP	Missense_Mutation	23	153197829	G	T	42	95
BRCA	TCGA-B6-A0IC	FAM48B1	SNP	Missense_Mutation	23	24381566	T	A	51	66
BRCA	TCGA-B6-A0IC	STARD8	SNP	Missense_Mutation	23	67937329	G	T	35	48
BRCA	TCGA-B6-A0IC	TIMMDC1	SNP	Missense_Mutation	3	119236093	C	G	32	29
BRCA	TCGA-B6-A0IC	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-B6-A0IC	RNF123	SNP	Silent	3	49750025	C	A	21	57
BRCA	TCGA-B6-A0IC	ZNF354C	SNP	Silent	5	178503490	C	T	19	35
BRCA	TCGA-B6-A0IC	BDP1	SNP	Missense_Mutation	5	70793174	C	T	28	76
BRCA	TCGA-B6-A0IC	MAP3K4	SNP	Missense_Mutation	6	161470644	C	T	17	53
BRCA	TCGA-B6-A0IC	ACCN3	SNP	Silent	7	150749810	G	A	40	44
BRCA	TCGA-B6-A0IC	SDK1	SNP	Splice_site	7	4011199	C	T	23	61
BRCA	TCGA-B6-A0IC	CROT	SNP	Missense_Mutation	7	86988539	C	G	29	55
BRCA	TCGA-B6-A0IC	ALDH1A1	SNP	Silent	9	75540496	C	T	32	60
BRCA	TCGA-B6-A0IC	ZCCHC6	DEL	Frame_Shift_Del	9	88961237	CTCTC	-	32	94
BRCA	TCGA-B6-A0IE	PRAMEF13	SNP	Missense_Mutation	1	13448451	C	G	28	51
BRCA	TCGA-B6-A0IE	ROR1	SNP	Missense_Mutation	1	64643348	G	A	40	87
BRCA	TCGA-B6-A0IE	PRICKLE1	SNP	Silent	12	42853698	A	T	7	45
BRCA	TCGA-B6-A0IE	VPS39	SNP	Silent	15	42458983	C	T	26	56
BRCA	TCGA-B6-A0IE	TBC1D2B	SNP	Missense_Mutation	15	78316850	C	T	23	96
BRCA	TCGA-B6-A0IE	NLK	SNP	Missense_Mutation	17	26495615	G	A	48	98
BRCA	TCGA-B6-A0IE	TP53	SNP	Splice_Site	17	7577018	C	T	18	63
BRCA	TCGA-B6-A0IE	GUCY2D	SNP	Missense_Mutation	17	7910008	G	A	37	65
BRCA	TCGA-B6-A0IE	MYO5B	SNP	Missense_Mutation	18	47352891	A	C	11	71
BRCA	TCGA-B6-A0IE	RTTN	SNP	Splice_site	18	67863738	G	A	40	59
BRCA	TCGA-B6-A0IE	ZNF439	SNP	Nonsense_Mutation	19	11979022	A	T	9	74
BRCA	TCGA-B6-A0IE	IL1RN	SNP	Missense_Mutation	2	113888708	G	T	47	75
BRCA	TCGA-B6-A0IE	GPR1	SNP	Missense_Mutation	2	207041836	A	C	5	55
BRCA	TCGA-B6-A0IE	COL9A3	SNP	Missense_Mutation	20	61460288	G	C	38	68
BRCA	TCGA-B6-A0IE	APOL5	SNP	Missense_Mutation	22	36116635	G	A	33	45
BRCA	TCGA-B6-A0IE	HPS3	SNP	Nonsense_Mutation	3	148880648	C	T	27	50
BRCA	TCGA-B6-A0IE	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-B6-A0IE	MUC4	SNP	Missense_Mutation	3	195497194	C	T	31	64
BRCA	TCGA-B6-A0IE	MUC4	SNP	Missense_Mutation	3	195510725	G	A	43	52
BRCA	TCGA-B6-A0IE	LTF	SNP	Silent	3	46492156	C	T	17	64
BRCA	TCGA-B6-A0IE	ADAMTS12	SNP	Missense_Mutation	5	33576497	G	A	44	54
BRCA	TCGA-B6-A0IE	KIF2A	SNP	Missense_Mutation	5	61668293	G	C	33	99
BRCA	TCGA-B6-A0IE	VCAN	DEL	Frame_Shift_Del	5	82818011	G	-	48	59
BRCA	TCGA-B6-A0IE	ZNF3	SNP	Missense_Mutation	7	99673193	G	C	38	66
BRCA	TCGA-B6-A0IE	ABRA	SNP	Missense_Mutation	8	107782189	C	A	20	50
BRCA	TCGA-B6-A0IE	DBC1	SNP	Missense_Mutation	9	121930047	C	T	27	98
BRCA	TCGA-B6-A0IE	ADAMTSL1	SNP	Missense_Mutation	9	18776871	G	A	40	62
BRCA	TCGA-B6-A0IG	FLG	SNP	Missense_Mutation	1	152285981	G	A	40	44
BRCA	TCGA-B6-A0IG	GPR52	SNP	Silent	1	174417411	C	A	29	60
BRCA	TCGA-B6-A0IG	SLC35F3	SNP	Silent	1	234452419	C	T	23	18
BRCA	TCGA-B6-A0IG	OR2T3	SNP	Missense_Mutation	1	248636826	C	T	23	57
BRCA	TCGA-B6-A0IG	PTGER3	SNP	Missense_Mutation	1	71512366	G	C	35	58
BRCA	TCGA-B6-A0IG	NSMCE4A	DEL	Frame_Shift_Del	10	123719061	TT	-	56	53
BRCA	TCGA-B6-A0IG	MRC1	SNP	Splice_site	10	18155491	G	A	43	86
BRCA	TCGA-B6-A0IG	MYO3A	SNP	Silent	10	26243889	C	T	20	64
BRCA	TCGA-B6-A0IG	ATG2A	SNP	Missense_Mutation	11	64669591	C	T	20	69
BRCA	TCGA-B6-A0IG	ODZ4	SNP	Missense_Mutation	11	78433879	G	A	39	62
BRCA	TCGA-B6-A0IG	LRRC43	SNP	Missense_Mutation	12	122669187	G	A	38	54
BRCA	TCGA-B6-A0IG	PDS5B	SNP	Missense_Mutation	13	33344430	G	C	45	89
BRCA	TCGA-B6-A0IG	RB1	SNP	Missense_Mutation	13	49050933	A	G	9	88
BRCA	TCGA-B6-A0IG	TM9SF1	SNP	Missense_Mutation	14	24664018	C	T	29	79
BRCA	TCGA-B6-A0IG	DAAM1	SNP	Missense_Mutation	14	59792440	T	A	52	92
BRCA	TCGA-B6-A0IG	EEF2K	SNP	Silent	16	22268146	C	T	31	50
BRCA	TCGA-B6-A0IG	C16orf78	SNP	Missense_Mutation	16	49433130	G	A	44	43
BRCA	TCGA-B6-A0IG	BBS2	SNP	Missense_Mutation	16	56536710	C	T	31	100
BRCA	TCGA-B6-A0IG	SPACA3	SNP	Missense_Mutation	17	31318972	C	T	27	51
BRCA	TCGA-B6-A0IG	ASXL3	SNP	Missense_Mutation	18	31325701	C	A	29	60
BRCA	TCGA-B6-A0IG	SYT4	SNP	Missense_Mutation	18	40853841	C	T	29	100
BRCA	TCGA-B6-A0IG	PRX	DEL	In_Frame_Del	19	40902613	GGCAGCTGTACCTCT	-	39	55
BRCA	TCGA-B6-A0IG	C2orf29	SNP	Missense_Mutation	2	101879132	G	A	39	100
BRCA	TCGA-B6-A0IG	MARCO	SNP	Missense_Mutation	2	119752091	G	A	40	33
BRCA	TCGA-B6-A0IG	PHF20	DEL	Frame_Shift_Del	20	34459596	CTGGCCAGGT	-	28	77
BRCA	TCGA-B6-A0IG	BLCAP	SNP	Missense_Mutation	20	36147543	G	C	35	73
BRCA	TCGA-B6-A0IG	BCL2L13	SNP	Missense_Mutation	22	18209657	G	T	42	99
BRCA	TCGA-B6-A0IG	ATP2B3	SNP	Missense_Mutation	23	152807210	G	A	40	97
BRCA	TCGA-B6-A0IG	MED12	SNP	Missense_Mutation	23	70344907	C	T	22	59
BRCA	TCGA-B6-A0IG	PGK1	SNP	Missense_Mutation	23	77378339	G	T	36	83
BRCA	TCGA-B6-A0IG	ADAMTS9	SNP	Missense_Mutation	3	64589940	G	T	46	52
BRCA	TCGA-B6-A0IG	ANK2	SNP	Silent	4	114199618	C	T	19	50
BRCA	TCGA-B6-A0IG	NPFFR2	SNP	Missense_Mutation	4	72897694	G	C	41	51
BRCA	TCGA-B6-A0IG	RELN	SNP	Missense_Mutation	7	103276003	G	T	46	64
BRCA	TCGA-B6-A0IG	NPTX2	SNP	Missense_Mutation	7	98254285	G	A	38	99
BRCA	TCGA-B6-A0IG	C9orf153	SNP	Splice_Site	9	88842313	T	A	55	46
BRCA	TCGA-B6-A0IH	CLCA1	SNP	Missense_Mutation	1	86961326	G	A	41	72
BRCA	TCGA-B6-A0IH	DUSP13	SNP	Missense_Mutation	10	76863684	G	A	44	54
BRCA	TCGA-B6-A0IH	C10orf12	SNP	Missense_Mutation	10	98742433	A	T	7	50
BRCA	TCGA-B6-A0IH	DCHS1	SNP	Missense_Mutation	11	6645151	C	T	19	97
BRCA	TCGA-B6-A0IH	DDX54	SNP	Silent	12	113599787	C	T	28	78
BRCA	TCGA-B6-A0IH	PFKM	SNP	Missense_Mutation	12	48535119	T	C	60	91
BRCA	TCGA-B6-A0IH	HERC2	SNP	Silent	15	28357017	G	A	37	55
BRCA	TCGA-B6-A0IH	KIAA1024	SNP	Missense_Mutation	15	79760670	G	A	46	100
BRCA	TCGA-B6-A0IH	XPO6	SNP	Missense_Mutation	16	28157469	T	C	49	73
BRCA	TCGA-B6-A0IH	CDH1	DEL	In_Frame_Del	16	68845601	GAGGTCACAGCCACA	-	41	49
BRCA	TCGA-B6-A0IH	KRT9	SNP	Missense_Mutation	17	39726220	T	C	52	59
BRCA	TCGA-B6-A0IH	TANC2	SNP	Missense_Mutation	17	61498693	C	T	30	97
BRCA	TCGA-B6-A0IH	SDK2	SNP	Missense_Mutation	17	71364597	C	T	27	100
BRCA	TCGA-B6-A0IH	ZNF585A	SNP	Silent	19	37643448	C	T	27	49
BRCA	TCGA-B6-A0IH	LCT	SNP	Missense_Mutation	2	136579662	T	A	52	60
BRCA	TCGA-B6-A0IH	RUNX1	SNP	Nonsense_Mutation	21	36206716	G	A	45	84
BRCA	TCGA-B6-A0IH	MAGEC3	SNP	Silent	23	140983081	G	A	39	45
BRCA	TCGA-B6-A0IH	MTM1	SNP	Missense_Mutation	23	149814175	C	T	21	69
BRCA	TCGA-B6-A0IH	SLC22A14	SNP	Missense_Mutation	3	38347837	G	A	42	45
BRCA	TCGA-B6-A0IH	GRB10	SNP	Nonsense_Mutation	7	50663154	T	A	61	93
BRCA	TCGA-B6-A0IH	GTF2IRD2	SNP	Missense_Mutation	7	74211389	T	G	60	60
BRCA	TCGA-B6-A0IH	CYLC2	SNP	Missense_Mutation	9	105767619	G	T	34	50
BRCA	TCGA-B6-A0IH	OR1Q1	SNP	Missense_Mutation	9	125377831	G	A	38	71
BRCA	TCGA-B6-A0IH	ZDHHC21	SNP	Missense_Mutation	9	14658806	C	T	27	63
BRCA	TCGA-B6-A0IH	RFX3	DEL	Frame_Shift_Del	9	3346744	CA	-	25	51
BRCA	TCGA-B6-A0IH	RMI1	SNP	Missense_Mutation	9	86617271	A	G	5	76
BRCA	TCGA-B6-A0IJ	ADAM30	SNP	Missense_Mutation	1	120438596	A	C	11	58
BRCA	TCGA-B6-A0IJ	APOBEC4	SNP	Silent	1	183616996	G	T	42	51
BRCA	TCGA-B6-A0IJ	PPP1R15B	SNP	Missense_Mutation	1	204379199	A	T	4	50
BRCA	TCGA-B6-A0IJ	C1orf186	SNP	Missense_Mutation	1	206243207	G	C	35	48
BRCA	TCGA-B6-A0IJ	PLXNA2	SNP	Missense_Mutation	1	208390491	C	G	28	55
BRCA	TCGA-B6-A0IJ	TAF5L	SNP	Missense_Mutation	1	229738621	G	C	35	98
BRCA	TCGA-B6-A0IJ	OR14I1	SNP	Missense_Mutation	1	248844691	C	A	32	45
BRCA	TCGA-B6-A0IJ	EYA3	SNP	Missense_Mutation	1	28339784	G	C	33	77
BRCA	TCGA-B6-A0IJ	PRKAA2	SNP	Splice_site	1	57159438	G	T	41	98
BRCA	TCGA-B6-A0IJ	HFM1	SNP	Splice_site	1	91788756	C	A	18	58
BRCA	TCGA-B6-A0IJ	HIF1AN	SNP	Silent	10	102296311	G	A	33	61
BRCA	TCGA-B6-A0IJ	NRAP	SNP	Silent	10	115348779	G	T	47	57
BRCA	TCGA-B6-A0IJ	OTUD1	SNP	Missense_Mutation	10	23729805	G	T	48	86
BRCA	TCGA-B6-A0IJ	EPC1	SNP	Splice_Site	10	32576025	C	A	18	100
BRCA	TCGA-B6-A0IJ	FAM21A	SNP	Missense_Mutation	10	51887518	T	G	56	52
BRCA	TCGA-B6-A0IJ	ENSG00000186082	SNP	Missense_Mutation	11	35882161	C	A	29	60
BRCA	TCGA-B6-A0IJ	OR4X2	SNP	Missense_Mutation	11	48266965	A	T	12	58
BRCA	TCGA-B6-A0IJ	OR52A5	SNP	Missense_Mutation	11	5153296	C	T	29	59
BRCA	TCGA-B6-A0IJ	FADS2	SNP	Silent	11	61615738	C	G	27	45
BRCA	TCGA-B6-A0IJ	SLC22A25	SNP	Missense_Mutation	11	62951206	C	T	24	44
BRCA	TCGA-B6-A0IJ	DNHD1	SNP	Missense_Mutation	11	6566067	C	T	27	50
BRCA	TCGA-B6-A0IJ	CLEC1A	SNP	Missense_Mutation	12	10233932	C	G	32	53
BRCA	TCGA-B6-A0IJ	PRB3	SNP	Nonsense_Mutation	12	11420173	G	A	45	59
BRCA	TCGA-B6-A0IJ	HPD	DEL	Splice_Site	12	122294467	CCACCCTCCCCGGGCACCTCA	-	30	51
BRCA	TCGA-B6-A0IJ	SLC15A5	SNP	Missense_Mutation	12	16397579	T	A	60	70
BRCA	TCGA-B6-A0IJ	PLCZ1	SNP	Nonsense_Mutation	12	18837202	T	A	56	51
BRCA	TCGA-B6-A0IJ	ST8SIA1	SNP	Missense_Mutation	12	22440177	T	A	64	87
BRCA	TCGA-B6-A0IJ	ENSG00000118976	SNP	Missense_Mutation	12	3948949	C	G	32	49
BRCA	TCGA-B6-A0IJ	PCED1B	SNP	Missense_Mutation	12	47629748	C	A	22	56
BRCA	TCGA-B6-A0IJ	SLC4A8	SNP	Missense_Mutation	12	51851241	G	T	33	66
BRCA	TCGA-B6-A0IJ	RPL41	SNP	Missense_Mutation	12	56511292	G	C	35	92
BRCA	TCGA-B6-A0IJ	SRGAP1	SNP	Missense_Mutation	12	64502729	G	C	45	100
BRCA	TCGA-B6-A0IJ	CHD4	SNP	Missense_Mutation	12	6709817	C	G	32	95
BRCA	TCGA-B6-A0IJ	MRPS31	SNP	Missense_Mutation	13	41303544	C	A	24	55
BRCA	TCGA-B6-A0IJ	FAM194B	SNP	Missense_Mutation	13	46115738	C	A	32	57
BRCA	TCGA-B6-A0IJ	SLC15A1	SNP	Missense_Mutation	13	99339888	T	A	59	90
BRCA	TCGA-B6-A0IJ	MDP1	SNP	Missense_Mutation	14	24683340	T	C	51	53
BRCA	TCGA-B6-A0IJ	WDHD1	SNP	Silent	14	55411098	T	G	61	54
BRCA	TCGA-B6-A0IJ	C14orf105	SNP	Missense_Mutation	14	57947351	A	G	15	57
BRCA	TCGA-B6-A0IJ	GOLGA5	SNP	Missense_Mutation	14	93275676	G	C	36	58
BRCA	TCGA-B6-A0IJ	RAD51	SNP	Silent	15	41022086	A	G	15	54
BRCA	TCGA-B6-A0IJ	TGM7	SNP	Missense_Mutation	15	43584967	C	A	24	52
BRCA	TCGA-B6-A0IJ	EDC3	SNP	Silent	15	74925172	C	G	22	56
BRCA	TCGA-B6-A0IJ	TTLL13	SNP	Missense_Mutation	15	90799441	G	A	42	94
BRCA	TCGA-B6-A0IJ	MCTP2	SNP	Missense_Mutation	15	94882595	G	C	45	59
BRCA	TCGA-B6-A0IJ	GRIN2A	SNP	Missense_Mutation	16	10032157	G	C	41	54
BRCA	TCGA-B6-A0IJ	SMG1	SNP	Silent	16	18863734	G	A	35	76
BRCA	TCGA-B6-A0IJ	IL4R	SNP	Missense_Mutation	16	27367189	T	A	50	69
BRCA	TCGA-B6-A0IJ	ZNF646	SNP	Missense_Mutation	16	31092572	G	C	41	54
BRCA	TCGA-B6-A0IJ	SLC12A4	SNP	Silent	16	67983759	G	A	37	48
BRCA	TCGA-B6-A0IJ	COG4	SNP	Missense_Mutation	16	70516652	C	T	19	63
BRCA	TCGA-B6-A0IJ	HYDIN	SNP	Missense_Mutation	16	70969958	C	T	31	89
BRCA	TCGA-B6-A0IJ	MYH4	SNP	Missense_Mutation	17	10355263	C	A	28	69
BRCA	TCGA-B6-A0IJ	DNAH9	SNP	Missense_Mutation	17	11687830	C	T	24	100
BRCA	TCGA-B6-A0IJ	SLFN5	SNP	Missense_Mutation	17	33592271	G	C	41	57
BRCA	TCGA-B6-A0IJ	TEX34	SNP	Missense_Mutation	17	43333760	T	C	50	44
BRCA	TCGA-B6-A0IJ	FAM64A	SNP	Silent	17	6348481	C	G	30	48
BRCA	TCGA-B6-A0IJ	SDK2	SNP	Nonsense_Mutation	17	71375645	G	T	48	84
BRCA	TCGA-B6-A0IJ	TP53	SNP	Missense_Mutation	17	7578190	T	C	49	88
BRCA	TCGA-B6-A0IJ	MC2R	SNP	Missense_Mutation	18	13885460	C	G	31	80
BRCA	TCGA-B6-A0IJ	NDC80	SNP	Missense_Mutation	18	2601425	G	C	45	88
BRCA	TCGA-B6-A0IJ	SLC39A6	SNP	Missense_Mutation	18	33691090	C	G	29	82
BRCA	TCGA-B6-A0IJ	EPG5	SNP	Silent	18	43483981	G	C	35	53
BRCA	TCGA-B6-A0IJ	ILVBL	SNP	Missense_Mutation	19	15228790	A	T	10	87
BRCA	TCGA-B6-A0IJ	NOTCH3	SNP	Missense_Mutation	19	15276281	C	G	32	96
BRCA	TCGA-B6-A0IJ	CYP4F11	SNP	Missense_Mutation	19	16038102	G	A	37	66
BRCA	TCGA-B6-A0IJ	ZNF101	SNP	Missense_Mutation	19	19790898	A	T	9	43
BRCA	TCGA-B6-A0IJ	ZNF208	SNP	Missense_Mutation	19	22155945	G	A	45	86
BRCA	TCGA-B6-A0IJ	ZNF730	SNP	Missense_Mutation	19	23329499	G	C	35	54
BRCA	TCGA-B6-A0IJ	TLE6	SNP	Missense_Mutation	19	2993572	C	G	30	73
BRCA	TCGA-B6-A0IJ	THAP8	SNP	Silent	19	36526357	C	T	30	48
BRCA	TCGA-B6-A0IJ	PLEKHG2	SNP	Missense_Mutation	19	39914678	C	A	32	49
BRCA	TCGA-B6-A0IJ	PSG11	SNP	Missense_Mutation	19	43529167	C	A	20	46
BRCA	TCGA-B6-A0IJ	KLK1	SNP	Silent	19	51323272	G	A	41	47
BRCA	TCGA-B6-A0IJ	ZNF841	SNP	Missense_Mutation	19	52568812	G	A	39	45
BRCA	TCGA-B6-A0IJ	NCKAP5	SNP	Missense_Mutation	2	133887640	C	G	19	76
BRCA	TCGA-B6-A0IJ	LRP2	SNP	Silent	2	170177303	C	A	23	19
BRCA	TCGA-B6-A0IJ	TTN	SNP	Missense_Mutation	2	179479664	A	G	8	93
BRCA	TCGA-B6-A0IJ	TTN	SNP	Missense_Mutation	2	179549456	G	C	44	66
BRCA	TCGA-B6-A0IJ	DNAH7	SNP	Missense_Mutation	2	196889189	T	A	50	66
BRCA	TCGA-B6-A0IJ	BZW1	SNP	Missense_Mutation	2	201682958	G	A	46	87
BRCA	TCGA-B6-A0IJ	KLF7	SNP	Missense_Mutation	2	207945962	G	C	42	100
BRCA	TCGA-B6-A0IJ	ABCA12	SNP	Missense_Mutation	2	215843072	G	T	33	85
BRCA	TCGA-B6-A0IJ	HJURP	SNP	Missense_Mutation	2	234750428	C	A	22	54
BRCA	TCGA-B6-A0IJ	BIRC6	SNP	Silent	2	32640645	A	G	3	65
BRCA	TCGA-B6-A0IJ	EML4	SNP	Missense_Mutation	2	42557309	C	A	24	47
BRCA	TCGA-B6-A0IJ	SIK1	DEL	Frame_Shift_Del	21	44839340	A	-	9	43
BRCA	TCGA-B6-A0IJ	SMTN	SNP	Missense_Mutation	22	31484908	A	G	3	54
BRCA	TCGA-B6-A0IJ	LDOC1L	SNP	Nonsense_Mutation	22	44893163	G	A	37	58
BRCA	TCGA-B6-A0IJ	FAM127B	SNP	Missense_Mutation	23	134186077	C	T	19	62
BRCA	TCGA-B6-A0IJ	ZNF75D	SNP	Missense_Mutation	23	134427720	T	G	52	49
BRCA	TCGA-B6-A0IJ	LOC644717	SNP	Silent	23	134812080	A	C	11	57
BRCA	TCGA-B6-A0IJ	MECP2	SNP	Missense_Mutation	23	153297782	G	A	38	83
BRCA	TCGA-B6-A0IJ	ZC3H12B	SNP	Missense_Mutation	23	64722721	G	A	40	60
BRCA	TCGA-B6-A0IJ	MORC1	SNP	Missense_Mutation	3	108819288	C	G	22	80
BRCA	TCGA-B6-A0IJ	WDR52	SNP	Missense_Mutation	3	113063398	T	G	54	74
BRCA	TCGA-B6-A0IJ	HEG1	SNP	Missense_Mutation	3	124732481	C	A	17	50
BRCA	TCGA-B6-A0IJ	SCN10A	SNP	Missense_Mutation	3	38764954	C	G	29	60
BRCA	TCGA-B6-A0IJ	BANK1	SNP	Splice_site	4	102992432	A	G	12	59
BRCA	TCGA-B6-A0IJ	FRAS1	SNP	Missense_Mutation	4	79322001	A	C	3	46
BRCA	TCGA-B6-A0IJ	TRPC7	SNP	Nonsense_Mutation	5	135692811	C	A	31	99
BRCA	TCGA-B6-A0IJ	PSD2	SNP	Silent	5	139193032	C	T	27	39
BRCA	TCGA-B6-A0IJ	MYO10	SNP	Nonsense_Mutation	5	16680191	G	C	40	50
BRCA	TCGA-B6-A0IJ	SQSTM1	SNP	Missense_Mutation	5	179251050	A	G	3	70
BRCA	TCGA-B6-A0IJ	DROSHA	SNP	Missense_Mutation	5	31526495	A	G	1	84
BRCA	TCGA-B6-A0IJ	SLC45A2	SNP	Missense_Mutation	5	33982475	C	T	20	58
BRCA	TCGA-B6-A0IJ	HSPB3	SNP	Missense_Mutation	5	53751624	C	T	25	57
BRCA	TCGA-B6-A0IJ	HIVEP1	SNP	Missense_Mutation	6	12122400	C	G	32	99
BRCA	TCGA-B6-A0IJ	UTRN	SNP	Missense_Mutation	6	145167956	G	C	35	81
BRCA	TCGA-B6-A0IJ	GPLD1	SNP	Missense_Mutation	6	24476481	G	T	46	48
BRCA	TCGA-B6-A0IJ	KIAA0319	SNP	Missense_Mutation	6	24596446	C	G	32	56
BRCA	TCGA-B6-A0IJ	FILIP1	SNP	Missense_Mutation	6	76023420	A	G	4	64
BRCA	TCGA-B6-A0IJ	HTR1E	SNP	Missense_Mutation	6	87725567	A	T	7	76
BRCA	TCGA-B6-A0IJ	PM20D2	SNP	Missense_Mutation	6	89859096	A	G	11	89
BRCA	TCGA-B6-A0IJ	ZCWPW1	SNP	Missense_Mutation	7	100013966	G	T	41	43
BRCA	TCGA-B6-A0IJ	ASZ1	SNP	Missense_Mutation	7	117066908	G	T	47	47
BRCA	TCGA-B6-A0IJ	MLL3	SNP	Missense_Mutation	7	152012412	C	T	25	90
BRCA	TCGA-B6-A0IJ	VSTM2A	SNP	Missense_Mutation	7	54636842	T	C	57	75
BRCA	TCGA-B6-A0IJ	ABCB1	SNP	Missense_Mutation	7	87178828	C	G	29	80
BRCA	TCGA-B6-A0IJ	STEAP4	SNP	Silent	7	87913447	A	T	1	46
BRCA	TCGA-B6-A0IJ	LMTK2	SNP	Nonsense_Mutation	7	97822389	C	G	29	60
BRCA	TCGA-B6-A0IJ	ATP6V1C1	SNP	Silent	8	104063354	T	C	64	56
BRCA	TCGA-B6-A0IJ	ZFPM2	SNP	Missense_Mutation	8	106646518	G	T	36	76
BRCA	TCGA-B6-A0IJ	LONRF1	SNP	Missense_Mutation	8	12594303	G	A	36	56
BRCA	TCGA-B6-A0IJ	ASAP1	SNP	Silent	8	131172126	G	A	34	65
BRCA	TCGA-B6-A0IJ	DGAT1	DEL	In_Frame_Del	8	145541085	GAGCCA	-	45	55
BRCA	TCGA-B6-A0IJ	DOCK5	SNP	Missense_Mutation	8	25149578	G	A	45	87
BRCA	TCGA-B6-A0IJ	PXDNL	SNP	Missense_Mutation	8	52384808	C	T	19	77
BRCA	TCGA-B6-A0IJ	PREX2	SNP	Missense_Mutation	8	69033181	G	C	34	53
BRCA	TCGA-B6-A0IJ	TNC	SNP	Silent	9	117825311	G	A	46	55
BRCA	TCGA-B6-A0IJ	TRAF1	SNP	Missense_Mutation	9	123671534	G	C	34	60
BRCA	TCGA-B6-A0IJ	IFNA14	SNP	Missense_Mutation	9	21239901	C	A	18	48
BRCA	TCGA-B6-A0IJ	C9orf11	SNP	Splice_site	9	27289729	G	T	34	53
BRCA	TCGA-B6-A0IJ	ANKRD18B	SNP	Missense_Mutation	9	33571262	G	A	33	47
BRCA	TCGA-B6-A0IJ	KIAA1045	SNP	Silent	9	34971433	C	G	25	48
BRCA	TCGA-B6-A0IK	KIF1B	SNP	Missense_Mutation	1	10412697	C	T	31	58
BRCA	TCGA-B6-A0IK	ITGA10	SNP	Silent	1	145532546	C	T	32	56
BRCA	TCGA-B6-A0IK	C1orf129	SNP	Splice_Site	1	170916667	G	A	33	66
BRCA	TCGA-B6-A0IK	NMNAT2	SNP	Missense_Mutation	1	183387389	G	T	44	72
BRCA	TCGA-B6-A0IK	KCNT2	SNP	Nonsense_Mutation	1	196274447	C	A	32	98
BRCA	TCGA-B6-A0IK	CNTN2	SNP	Nonsense_Mutation	1	205030995	C	T	29	76
BRCA	TCGA-B6-A0IK	DSTYK	SNP	Silent	1	205132057	G	A	45	78
BRCA	TCGA-B6-A0IK	ARID4B	SNP	Nonsense_Mutation	1	235345181	G	C	45	74
BRCA	TCGA-B6-A0IK	PLCH2	SNP	Silent	1	2422690	C	T	29	57
BRCA	TCGA-B6-A0IK	MYOM3	SNP	Splice_site	1	24387551	C	G	32	80
BRCA	TCGA-B6-A0IK	HMGN2	SNP	Missense_Mutation	1	26799995	G	A	33	84
BRCA	TCGA-B6-A0IK	HMGN2	SNP	Missense_Mutation	1	26800201	G	A	33	88
BRCA	TCGA-B6-A0IK	ZBTB8OS	SNP	Silent	1	33116131	G	A	45	51
BRCA	TCGA-B6-A0IK	ZMYM4	SNP	Missense_Mutation	1	35870691	C	T	29	80
BRCA	TCGA-B6-A0IK	RLF	SNP	Missense_Mutation	1	40702638	C	T	29	100
BRCA	TCGA-B6-A0IK	PLK3	SNP	Silent	1	45268477	G	A	45	54
BRCA	TCGA-B6-A0IK	ZCCHC11	SNP	Missense_Mutation	1	52956444	G	T	45	98
BRCA	TCGA-B6-A0IK	HOOK1	SNP	Missense_Mutation	1	60324118	G	C	45	90
BRCA	TCGA-B6-A0IK	C1orf200	SNP	Silent	1	9713891	G	A	39	47
BRCA	TCGA-B6-A0IK	SUFU	SNP	Missense_Mutation	10	104386944	G	A	37	90
BRCA	TCGA-B6-A0IK	EPC1	SNP	Missense_Mutation	10	32594768	T	C	52	92
BRCA	TCGA-B6-A0IK	CSGALNACT2	SNP	Missense_Mutation	10	43654238	G	C	33	84
BRCA	TCGA-B6-A0IK	DGAT2	SNP	Missense_Mutation	11	75509333	G	A	37	68
BRCA	TCGA-B6-A0IK	TMEM132D	SNP	Missense_Mutation	12	129569138	G	A	40	67
BRCA	TCGA-B6-A0IK	GALNT9	SNP	Missense_Mutation	12	132681759	C	G	30	96
BRCA	TCGA-B6-A0IK	AMIGO2	SNP	Silent	12	47471790	C	T	28	65
BRCA	TCGA-B6-A0IK	PFKM	SNP	Silent	12	48528758	C	T	29	97
BRCA	TCGA-B6-A0IK	CALCOCO1	SNP	Silent	12	54109083	C	T	29	64
BRCA	TCGA-B6-A0IK	METTL7B	SNP	Missense_Mutation	12	56075783	G	A	41	91
BRCA	TCGA-B6-A0IK	ERBB3	SNP	Missense_Mutation	12	56482341	G	T	41	98
BRCA	TCGA-B6-A0IK	BAZ2A	SNP	Missense_Mutation	12	56992955	C	T	31	96
BRCA	TCGA-B6-A0IK	TMEM194A	SNP	Silent	12	57464509	G	A	45	57
BRCA	TCGA-B6-A0IK	ARHGAP9	SNP	Missense_Mutation	12	57871356	C	G	32	60
BRCA	TCGA-B6-A0IK	NOP2	SNP	Missense_Mutation	12	6676997	T	C	55	54
BRCA	TCGA-B6-A0IK	NBEA	SNP	Missense_Mutation	13	35733166	C	T	28	96
BRCA	TCGA-B6-A0IK	DCLK1	SNP	Silent	13	36686078	G	A	45	65
BRCA	TCGA-B6-A0IK	CDC42BPB	SNP	Missense_Mutation	14	103410267	C	T	27	49
BRCA	TCGA-B6-A0IK	NOP9	SNP	Silent	14	24771259	C	G	32	50
BRCA	TCGA-B6-A0IK	EML5	SNP	Nonsense_Mutation	14	89212617	G	T	45	98
BRCA	TCGA-B6-A0IK	SERPINA10	SNP	Missense_Mutation	14	94754811	C	A	29	75
BRCA	TCGA-B6-A0IK	SETD3	SNP	Missense_Mutation	14	99865308	G	A	39	73
BRCA	TCGA-B6-A0IK	TLN2	SNP	Missense_Mutation	15	63128260	G	T	45	100
BRCA	TCGA-B6-A0IK	ZWILCH	SNP	Missense_Mutation	15	66807907	C	G	32	65
BRCA	TCGA-B6-A0IK	HOMER2	SNP	Silent	15	83523513	G	T	43	49
BRCA	TCGA-B6-A0IK	AKAP13	SNP	Missense_Mutation	15	86123811	C	T	27	55
BRCA	TCGA-B6-A0IK	C16orf91	SNP	Missense_Mutation	16	1470294	G	A	37	44
BRCA	TCGA-B6-A0IK	PKD1	SNP	Missense_Mutation	16	2160622	C	T	27	31
BRCA	TCGA-B6-A0IK	RBBP6	SNP	Missense_Mutation	16	24581246	C	G	29	92
BRCA	TCGA-B6-A0IK	ADCY9	SNP	Silent	16	4164421	G	A	45	56
BRCA	TCGA-B6-A0IK	C16orf89	SNP	Missense_Mutation	16	5097954	C	T	29	50
BRCA	TCGA-B6-A0IK	CDH8	SNP	Silent	16	61689531	A	G	12	44
BRCA	TCGA-B6-A0IK	AP1G1	SNP	Missense_Mutation	16	71799443	G	A	39	52
BRCA	TCGA-B6-A0IK	ZNF286A	SNP	Missense_Mutation	17	15620563	C	T	32	76
BRCA	TCGA-B6-A0IK	ZNF286A	SNP	Silent	17	15620565	C	T	29	50
BRCA	TCGA-B6-A0IK	PLXDC1	SNP	Silent	17	37234233	G	A	45	56
BRCA	TCGA-B6-A0IK	KRTAP4-12	SNP	Missense_Mutation	17	39280215	C	G	17	50
BRCA	TCGA-B6-A0IK	INTS2	SNP	Splice_Site	17	59949625	C	A	18	95
BRCA	TCGA-B6-A0IK	GPR142	SNP	Missense_Mutation	17	72368281	G	A	37	47
BRCA	TCGA-B6-A0IK	C17orf77	SNP	Silent	17	72588620	G	A	39	51
BRCA	TCGA-B6-A0IK	TP53	SNP	Missense_Mutation	17	7578268	A	C	3	88
BRCA	TCGA-B6-A0IK	SMAD2	SNP	Nonsense_Mutation	18	45368211	G	C	45	100
BRCA	TCGA-B6-A0IK	CACNA1A	SNP	Silent	19	13370401	C	T	17	60
BRCA	TCGA-B6-A0IK	CC2D1A	SNP	Missense_Mutation	19	14034266	G	A	37	91
BRCA	TCGA-B6-A0IK	PKN1	SNP	Silent	19	14581434	C	T	29	53
BRCA	TCGA-B6-A0IK	ZNF506	SNP	Missense_Mutation	19	19906419	C	G	32	50
BRCA	TCGA-B6-A0IK	EHD2	SNP	Silent	19	48244395	G	C	45	69
BRCA	TCGA-B6-A0IK	CGB7	SNP	Splice_site	19	49558633	C	A	30	48
BRCA	TCGA-B6-A0IK	SIGLEC5	SNP	Silent	19	52130890	C	T	32	55
BRCA	TCGA-B6-A0IK	ZNF677	SNP	Missense_Mutation	19	53741048	C	T	32	42
BRCA	TCGA-B6-A0IK	NLRP4	SNP	Silent	19	56379195	T	A	64	34
BRCA	TCGA-B6-A0IK	ZNF587	SNP	Missense_Mutation	19	58371378	C	G	30	57
BRCA	TCGA-B6-A0IK	MUC16	SNP	Missense_Mutation	19	9056568	C	T	30	53
BRCA	TCGA-B6-A0IK	TAF1B	SNP	Missense_Mutation	2	10008483	C	T	32	57
BRCA	TCGA-B6-A0IK	NPHP1	SNP	Missense_Mutation	2	110917730	G	A	40	59
BRCA	TCGA-B6-A0IK	SLC35F5	SNP	Missense_Mutation	2	114512753	C	T	29	90
BRCA	TCGA-B6-A0IK	LRP1B	SNP	Missense_Mutation	2	141458082	C	T	30	84
BRCA	TCGA-B6-A0IK	EPC2	SNP	Missense_Mutation	2	149528717	C	T	32	91
BRCA	TCGA-B6-A0IK	BAZ2B	SNP	Missense_Mutation	2	160261381	C	G	32	58
BRCA	TCGA-B6-A0IK	BAZ2B	SNP	Missense_Mutation	2	160261407	C	G	29	100
BRCA	TCGA-B6-A0IK	BAZ2B	SNP	Missense_Mutation	2	160295068	G	C	42	76
BRCA	TCGA-B6-A0IK	ITGB6	SNP	Silent	2	160993970	C	A	29	58
BRCA	TCGA-B6-A0IK	NOP58	SNP	Silent	2	203162128	C	T	23	47
BRCA	TCGA-B6-A0IK	CRYGC	SNP	Missense_Mutation	2	208992995	G	A	38	57
BRCA	TCGA-B6-A0IK	UGT1A10	SNP	Splice_site	2	234545168	C	T	29	30
BRCA	TCGA-B6-A0IK	THNSL2	SNP	Missense_Mutation	2	88472694	G	A	40	57
BRCA	TCGA-B6-A0IK	TGM2	SNP	Silent	20	36766744	C	T	29	54
BRCA	TCGA-B6-A0IK	ADNP	SNP	Missense_Mutation	20	49510210	C	T	29	70
BRCA	TCGA-B6-A0IK	IL17RA	SNP	Missense_Mutation	22	17579742	G	C	45	46
BRCA	TCGA-B6-A0IK	DRP2	SNP	Missense_Mutation	23	100493982	G	A	33	92
BRCA	TCGA-B6-A0IK	GPRASP1	SNP	Nonsense_Mutation	23	101912418	C	T	31	54
BRCA	TCGA-B6-A0IK	LRCH2	SNP	Missense_Mutation	23	114404908	G	T	33	80
BRCA	TCGA-B6-A0IK	LRCH2	SNP	Missense_Mutation	23	114404916	G	A	41	94
BRCA	TCGA-B6-A0IK	SLITRK2	SNP	Silent	23	144904063	C	T	19	59
BRCA	TCGA-B6-A0IK	MAGEB17	SNP	Nonsense_Mutation	23	16189508	C	T	29	61
BRCA	TCGA-B6-A0IK	SCML1	SNP	Missense_Mutation	23	17768113	G	A	45	38
BRCA	TCGA-B6-A0IK	MAGEB3	SNP	Missense_Mutation	23	30254772	C	T	22	69
BRCA	TCGA-B6-A0IK	MED12	SNP	Silent	23	70357674	C	T	25	52
BRCA	TCGA-B6-A0IK	IMPG2	SNP	Missense_Mutation	3	100949976	C	T	29	79
BRCA	TCGA-B6-A0IK	CBLB	SNP	Missense_Mutation	3	105459369	G	C	45	98
BRCA	TCGA-B6-A0IK	GOLGB1	SNP	Missense_Mutation	3	121435775	G	A	33	56
BRCA	TCGA-B6-A0IK	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-B6-A0IK	ZNF167	SNP	Missense_Mutation	3	44612634	C	T	24	78
BRCA	TCGA-B6-A0IK	CDCP1	SNP	Silent	3	45152068	C	A	30	50
BRCA	TCGA-B6-A0IK	TLR9	SNP	Silent	3	52255704	G	A	37	48
BRCA	TCGA-B6-A0IK	OR5H14	SNP	Silent	3	97868454	C	T	24	48
BRCA	TCGA-B6-A0IK	C4orf21	SNP	Missense_Mutation	4	113481982	G	C	33	58
BRCA	TCGA-B6-A0IK	ANK2	SNP	Silent	4	114279248	G	A	38	58
BRCA	TCGA-B6-A0IK	KLF3	SNP	Missense_Mutation	4	38690278	G	A	45	66
BRCA	TCGA-B6-A0IK	RUFY3	SNP	Missense_Mutation	4	71639285	G	A	45	100
BRCA	TCGA-B6-A0IK	PRKG2	SNP	Silent	4	82126025	C	T	31	7
BRCA	TCGA-B6-A0IK	ROPN1L	SNP	Missense_Mutation	5	10464988	C	G	32	51
BRCA	TCGA-B6-A0IK	CDO1	SNP	Missense_Mutation	5	115146915	C	G	29	79
BRCA	TCGA-B6-A0IK	PCDHA10	SNP	Missense_Mutation	5	140237804	C	T	27	45
BRCA	TCGA-B6-A0IK	CCDC99	SNP	Splice_Site	5	169023706	G	A	44	93
BRCA	TCGA-B6-A0IK	B4GALT7	SNP	Silent	5	177031459	C	G	32	51
BRCA	TCGA-B6-A0IK	LIFR	SNP	Missense_Mutation	5	38504110	C	T	29	64
BRCA	TCGA-B6-A0IK	HCN1	SNP	Missense_Mutation	5	45645560	C	G	29	75
BRCA	TCGA-B6-A0IK	ULBP1	SNP	Silent	6	150291247	C	T	32	47
BRCA	TCGA-B6-A0IK	SYNJ2	SNP	Silent	6	158516838	C	G	22	48
BRCA	TCGA-B6-A0IK	C6orf62	SNP	Missense_Mutation	6	24716531	C	T	29	100
BRCA	TCGA-B6-A0IK	BTN2A2	SNP	Nonsense_Mutation	6	26388276	C	T	21	50
BRCA	TCGA-B6-A0IK	TNXB	SNP	Missense_Mutation	6	32041678	C	T	27	51
BRCA	TCGA-B6-A0IK	RIMS1	SNP	Missense_Mutation	6	72968780	G	A	33	74
BRCA	TCGA-B6-A0IK	MLL5	SNP	Missense_Mutation	7	104752681	G	A	37	69
BRCA	TCGA-B6-A0IK	GPR85	SNP	Missense_Mutation	7	112723971	C	A	32	88
BRCA	TCGA-B6-A0IK	PPP1R3A	SNP	Missense_Mutation	7	113558463	G	A	41	86
BRCA	TCGA-B6-A0IK	MET	SNP	Silent	7	116436043	G	A	43	50
BRCA	TCGA-B6-A0IK	SMO	SNP	Missense_Mutation	7	128848650	G	A	45	82
BRCA	TCGA-B6-A0IK	ZC3HAV1	SNP	Silent	7	138774481	C	T	24	20
BRCA	TCGA-B6-A0IK	MGAM	SNP	Splice_site	7	141795512	G	C	45	99
BRCA	TCGA-B6-A0IK	RBM33	SNP	Silent	7	155538167	G	A	40	24
BRCA	TCGA-B6-A0IK	DNAH11	SNP	Missense_Mutation	7	21882253	G	A	41	94
BRCA	TCGA-B6-A0IK	ABCA13	SNP	Missense_Mutation	7	48319443	C	G	32	46
BRCA	TCGA-B6-A0IK	ZNF736	SNP	Missense_Mutation	7	63809412	C	G	29	79
BRCA	TCGA-B6-A0IK	ABCB4	SNP	Silent	7	87069530	G	T	45	72
BRCA	TCGA-B6-A0IK	STEAP1	SNP	Silent	7	89789120	C	T	17	47
BRCA	TCGA-B6-A0IK	RGS22	SNP	Missense_Mutation	8	101052243	C	T	32	86
BRCA	TCGA-B6-A0IK	KLHL38	SNP	Missense_Mutation	8	124658251	G	C	33	65
BRCA	TCGA-B6-A0IK	LZTS1	SNP	Missense_Mutation	8	20110307	C	G	30	95
BRCA	TCGA-B6-A0IK	DUSP4	SNP	Splice_Site	8	29194929	C	T	32	94
BRCA	TCGA-B6-A0IK	TGS1	SNP	Translation_Start_Site	8	56686093	C	A	24	54
BRCA	TCGA-B6-A0IK	ZFHX4	SNP	Missense_Mutation	8	77767690	C	G	32	69
BRCA	TCGA-B6-A0IK	OR13C2	SNP	Missense_Mutation	9	107367603	G	C	41	54
BRCA	TCGA-B6-A0IK	ZNF483	SNP	Missense_Mutation	9	114305214	G	C	33	57
BRCA	TCGA-B6-A0IK	TNFSF15	SNP	Silent	9	117552737	G	A	36	52
BRCA	TCGA-B6-A0IK	TNC	SNP	Missense_Mutation	9	117848731	C	T	29	76
BRCA	TCGA-B6-A0IK	ODF2	SNP	Missense_Mutation	9	131233592	G	C	33	54
BRCA	TCGA-B6-A0IK	ODF2	SNP	Silent	9	131235999	G	A	45	55
BRCA	TCGA-B6-A0IK	ODF2	SNP	Splice_site	9	131236018	G	C	33	84
BRCA	TCGA-B6-A0IK	SARDH	SNP	Splice_site	9	136550315	C	T	21	92
BRCA	TCGA-B6-A0IK	PPP1R26	SNP	Silent	9	138379215	G	A	45	35
BRCA	TCGA-B6-A0IK	PRUNE2	SNP	Silent	9	79239391	C	A	29	84
BRCA	TCGA-B6-A0IK	AGTPBP1	SNP	Nonsense_Mutation	9	88233910	G	A	45	85
BRCA	TCGA-B6-A0IK	ECM2	SNP	Missense_Mutation	9	95277170	C	T	27	51
BRCA	TCGA-B6-A0IM	KCNH1	SNP	Missense_Mutation	1	210857470	C	T	23	97
BRCA	TCGA-B6-A0IM	GATA3	INS	Frame_Shift_Ins	10	8115873	-	C	54	59
BRCA	TCGA-B6-A0IM	C1QTNF4	SNP	Silent	11	47611487	G	A	40	47
BRCA	TCGA-B6-A0IM	OR4C45	SNP	Missense_Mutation	11	48367308	G	T	47	68
BRCA	TCGA-B6-A0IM	TRIP4	SNP	Silent	15	64701983	G	A	41	59
BRCA	TCGA-B6-A0IM	IGF1R	SNP	Silent	15	99478057	C	T	19	50
BRCA	TCGA-B6-A0IM	MAPK8IP3	SNP	Missense_Mutation	16	1798259	G	T	45	99
BRCA	TCGA-B6-A0IM	TBC1D29	SNP	Missense_Mutation	17	28887183	C	T	23	52
BRCA	TCGA-B6-A0IM	GPS2	DEL	Splice_Site	17	7217398	C	-	18	84
BRCA	TCGA-B6-A0IM	NLRP5	SNP	Missense_Mutation	19	56538873	G	A	40	48
BRCA	TCGA-B6-A0IM	ZNF416	SNP	Missense_Mutation	19	58083540	G	A	37	48
BRCA	TCGA-B6-A0IM	LOC100287041	INS	Frame_Shift_Ins	2	110873467	-	G	11	58
BRCA	TCGA-B6-A0IM	STK25	SNP	Missense_Mutation	2	242440175	C	T	23	99
BRCA	TCGA-B6-A0IM	PRND	SNP	Silent	20	4705266	G	A	39	38
BRCA	TCGA-B6-A0IM	SREBF2	SNP	Splice_Site	22	42281016	G	A	40	81
BRCA	TCGA-B6-A0IM	CELSR1	SNP	Splice_Site	22	46795613	C	A	18	97
BRCA	TCGA-B6-A0IM	PNCK	SNP	Splice_Site	23	152937334	C	A	18	95
BRCA	TCGA-B6-A0IM	TRO	SNP	Silent	23	54955782	G	A	37	28
BRCA	TCGA-B6-A0IM	STARD8	SNP	Silent	23	67938433	C	T	27	37
BRCA	TCGA-B6-A0IM	EFHB	SNP	Missense_Mutation	3	19975051	C	T	18	50
BRCA	TCGA-B6-A0IM	TRIM71	SNP	Missense_Mutation	3	32933156	G	T	48	57
BRCA	TCGA-B6-A0IM	LOC100287951	SNP	Silent	4	10413217	G	A	46	58
BRCA	TCGA-B6-A0IM	ZBTB49	SNP	Missense_Mutation	4	4322466	G	A	38	75
BRCA	TCGA-B6-A0IM	RAD50	SNP	Missense_Mutation	5	131926953	T	C	57	90
BRCA	TCGA-B6-A0IM	C5orf42	SNP	Missense_Mutation	5	37213798	C	G	26	49
BRCA	TCGA-B6-A0IM	NNT	SNP	Splice_site	5	43702838	G	C	35	100
BRCA	TCGA-B6-A0IM	MAP3K1	SNP	Nonsense_Mutation	5	56176548	C	T	29	96
BRCA	TCGA-B6-A0IM	MAP3K1	DEL	Frame_Shift_Del	5	56189442	C	-	29	95
BRCA	TCGA-B6-A0IM	ZNF277	SNP	Silent	7	111982649	C	G	30	50
BRCA	TCGA-B6-A0IM	OR2F1	SNP	Missense_Mutation	7	143657386	G	A	44	60
BRCA	TCGA-B6-A0IM	LMBR1	SNP	Silent	7	156521383	T	C	62	58
BRCA	TCGA-B6-A0IM	GLI3	SNP	Missense_Mutation	7	42007317	C	G	26	66
BRCA	TCGA-B6-A0IM	SAMD9	SNP	Missense_Mutation	7	92733180	G	C	36	91
BRCA	TCGA-B6-A0IM	BAG4	DEL	Frame_Shift_Del	8	38067960	TGTT	-	55	52
BRCA	TCGA-B6-A0IM	UNC13B	SNP	Missense_Mutation	9	35376118	C	G	22	100
BRCA	TCGA-B6-A0IN	LOC728531	DEL	Frame_Shift_Del	1	224191297	TCAGATGCCTGGTA	-	58	42
BRCA	TCGA-B6-A0IN	MTR	SNP	Missense_Mutation	1	236959013	G	A	38	60
BRCA	TCGA-B6-A0IN	TIE1	SNP	Silent	1	43773137	G	A	35	59
BRCA	TCGA-B6-A0IN	OR51A7	SNP	Missense_Mutation	11	4929530	G	T	47	48
BRCA	TCGA-B6-A0IN	LOC283398	SNP	Missense_Mutation	12	94942395	A	T	10	76
BRCA	TCGA-B6-A0IN	ATP12A	SNP	Silent	13	25281421	C	T	26	63
BRCA	TCGA-B6-A0IN	GPC5	SNP	Silent	13	92345973	G	A	39	34
BRCA	TCGA-B6-A0IN	IGHV3-6	SNP	Missense_Mutation	14	106322070	T	A	59	51
BRCA	TCGA-B6-A0IN	AP1G2	SNP	Missense_Mutation	14	24035346	C	T	29	63
BRCA	TCGA-B6-A0IN	SLC35F4	SNP	Missense_Mutation	14	58048140	C	T	23	100
BRCA	TCGA-B6-A0IN	BCMO1	SNP	Nonsense_Mutation	16	81279117	C	T	25	42
BRCA	TCGA-B6-A0IN	FANCA	DEL	Frame_Shift_Del	16	89836576	G	-	47	75
BRCA	TCGA-B6-A0IN	ROCK1	SNP	Nonsense_Mutation	18	18586384	G	A	47	84
BRCA	TCGA-B6-A0IN	GIPC3	DEL	Frame_Shift_Del	19	3590123	T	-	56	81
BRCA	TCGA-B6-A0IN	ATP5SL	SNP	Silent	19	41939224	A	G	2	24
BRCA	TCGA-B6-A0IN	LRRC4B	SNP	Silent	19	51022088	G	A	40	55
BRCA	TCGA-B6-A0IN	BIN1	SNP	Silent	2	127806177	G	A	38	30
BRCA	TCGA-B6-A0IN	CDCA7	SNP	Missense_Mutation	2	174230273	G	A	41	54
BRCA	TCGA-B6-A0IN	TTN	SNP	Missense_Mutation	2	179425252	G	T	43	88
BRCA	TCGA-B6-A0IN	TTN	SNP	Nonsense_Mutation	2	179449558	G	A	39	58
BRCA	TCGA-B6-A0IN	EIF2AK3	INS	Frame_Shift_Ins	2	88857363	-	C	58	86
BRCA	TCGA-B6-A0IN	FER1L5	SNP	Missense_Mutation	2	97351984	G	A	37	80
BRCA	TCGA-B6-A0IN	RARB	SNP	Missense_Mutation	3	25542800	G	A	41	97
BRCA	TCGA-B6-A0IN	PARP3	SNP	Missense_Mutation	3	51981815	C	A	24	60
BRCA	TCGA-B6-A0IN	LPHN3	SNP	Missense_Mutation	4	62935938	T	G	59	88
BRCA	TCGA-B6-A0IN	SNCAIP	SNP	Missense_Mutation	5	121726839	C	T	22	84
BRCA	TCGA-B6-A0IN	ZNF800	SNP	Silent	7	127026205	A	G	16	59
BRCA	TCGA-B6-A0IN	CCDC136	SNP	Silent	7	128434806	G	A	33	55
BRCA	TCGA-B6-A0IN	SLC20A2	SNP	Nonsense_Mutation	8	42297142	G	A	40	54
BRCA	TCGA-B6-A0IN	ENSG00000237029	SNP	Silent	8	86555155	G	A	44	51
BRCA	TCGA-B6-A0IO	FLG2	SNP	Missense_Mutation	1	152328629	G	T	47	58
BRCA	TCGA-B6-A0IO	HHAT	SNP	Missense_Mutation	1	210847683	G	T	40	80
BRCA	TCGA-B6-A0IO	HSPG2	SNP	Missense_Mutation	1	22157965	C	T	23	97
BRCA	TCGA-B6-A0IO	ABCB10	SNP	Missense_Mutation	1	229663041	C	G	29	81
BRCA	TCGA-B6-A0IO	FAM151A	SNP	Missense_Mutation	1	55075435	G	A	39	57
BRCA	TCGA-B6-A0IO	CTBS	SNP	Missense_Mutation	1	85028998	C	T	20	57
BRCA	TCGA-B6-A0IO	C10orf137	SNP	Missense_Mutation	10	127429725	G	A	33	97
BRCA	TCGA-B6-A0IO	LOC100289151	SNP	Silent	10	15059247	T	C	50	46
BRCA	TCGA-B6-A0IO	AP3M1	SNP	Missense_Mutation	10	75884140	G	A	45	100
BRCA	TCGA-B6-A0IO	PTEN	SNP	Missense_Mutation	10	89692794	A	T	8	88
BRCA	TCGA-B6-A0IO	UBE4A	SNP	Missense_Mutation	11	118239367	A	G	12	76
BRCA	TCGA-B6-A0IO	NFRKB	SNP	Silent	11	129762649	T	C	54	38
BRCA	TCGA-B6-A0IO	DDB2	SNP	Splice_site	11	47259551	C	T	31	85
BRCA	TCGA-B6-A0IO	PEBP1	SNP	Silent	12	118574086	G	C	38	51
BRCA	TCGA-B6-A0IO	ANAPC5	SNP	Nonsense_Mutation	12	121746366	C	A	30	80
BRCA	TCGA-B6-A0IO	NCOR2	SNP	Missense_Mutation	12	124816874	G	C	42	62
BRCA	TCGA-B6-A0IO	AMHR2	SNP	Missense_Mutation	12	53819509	G	C	39	72
BRCA	TCGA-B6-A0IO	TMTC2	SNP	Missense_Mutation	12	83526091	G	C	37	95
BRCA	TCGA-B6-A0IO	GTF2F2	SNP	Silent	13	45694817	G	A	45	61
BRCA	TCGA-B6-A0IO	DOCK9	SNP	Missense_Mutation	13	99460026	A	C	1	52
BRCA	TCGA-B6-A0IO	ARHGEF40	SNP	Missense_Mutation	14	21549152	C	T	27	54
BRCA	TCGA-B6-A0IO	TTC7B	SNP	Missense_Mutation	14	91110527	C	T	27	98
BRCA	TCGA-B6-A0IO	ISLR2	SNP	Silent	15	74426742	C	T	27	49
BRCA	TCGA-B6-A0IO	POLG	SNP	Silent	15	89870412	C	T	25	58
BRCA	TCGA-B6-A0IO	COG8	SNP	Silent	16	69370510	G	A	45	46
BRCA	TCGA-B6-A0IO	ZFHX3	SNP	Missense_Mutation	16	72993144	C	T	27	94
BRCA	TCGA-B6-A0IO	PLCG2	SNP	Silent	16	81902858	C	A	29	59
BRCA	TCGA-B6-A0IO	KCNJ12	SNP	Silent	17	21319341	C	T	27	40
BRCA	TCGA-B6-A0IO	ABHD15	SNP	Missense_Mutation	17	27889902	C	T	19	55
BRCA	TCGA-B6-A0IO	TMIGD1	SNP	Missense_Mutation	17	28656338	C	T	23	72
BRCA	TCGA-B6-A0IO	COASY	INS	Frame_Shift_Ins	17	40714751	-	T	32	47
BRCA	TCGA-B6-A0IO	KIF1C	SNP	Missense_Mutation	17	4925966	C	T	23	72
BRCA	TCGA-B6-A0IO	PRKAR1A	SNP	Silent	17	66521903	T	C	61	65
BRCA	TCGA-B6-A0IO	SLC38A10	SNP	Missense_Mutation	17	79226469	C	A	17	48
BRCA	TCGA-B6-A0IO	FAM71E2	SNP	Silent	19	55872361	C	T	19	38
BRCA	TCGA-B6-A0IO	RIF1	SNP	Missense_Mutation	2	152285358	C	T	31	83
BRCA	TCGA-B6-A0IO	SP100	SNP	Missense_Mutation	2	231367806	G	C	45	51
BRCA	TCGA-B6-A0IO	GCKR	SNP	Missense_Mutation	2	27722054	C	A	19	38
BRCA	TCGA-B6-A0IO	NINL	SNP	Missense_Mutation	20	25507207	T	G	60	49
BRCA	TCGA-B6-A0IO	TMPRSS6	SNP	Missense_Mutation	22	37485669	C	G	31	89
BRCA	TCGA-B6-A0IO	ZNF75D	SNP	Silent	23	134427818	G	A	36	52
BRCA	TCGA-B6-A0IO	CXorf38	SNP	Silent	23	40489945	C	T	32	66
BRCA	TCGA-B6-A0IO	RBM10	SNP	Silent	23	47044963	C	T	32	49
BRCA	TCGA-B6-A0IO	USP11	SNP	Silent	23	47092577	C	T	27	54
BRCA	TCGA-B6-A0IO	WAS	SNP	Silent	23	48547798	G	A	33	59
BRCA	TCGA-B6-A0IO	DACH2	SNP	Missense_Mutation	23	85404051	C	G	23	91
BRCA	TCGA-B6-A0IO	AADACL2	SNP	Missense_Mutation	3	151474973	G	A	33	50
BRCA	TCGA-B6-A0IO	CLCN2	SNP	Missense_Mutation	3	184070098	C	T	31	60
BRCA	TCGA-B6-A0IO	MUC4	SNP	Missense_Mutation	3	195507062	C	T	31	47
BRCA	TCGA-B6-A0IO	RAD18	SNP	Missense_Mutation	3	8932110	G	A	33	49
BRCA	TCGA-B6-A0IO	PCDHA9	SNP	Silent	5	140229589	G	A	38	56
BRCA	TCGA-B6-A0IO	MAP3K1	SNP	Nonsense_Mutation	5	56168740	C	T	19	91
BRCA	TCGA-B6-A0IO	MAP3K1	DEL	Frame_Shift_Del	5	56170880	G	-	47	73
BRCA	TCGA-B6-A0IO	CKMT2	SNP	Missense_Mutation	5	80562003	G	A	41	100
BRCA	TCGA-B6-A0IO	ENPP1	SNP	Splice_Site	6	132185712	G	T	44	99
BRCA	TCGA-B6-A0IO	C6orf211	SNP	Missense_Mutation	6	151789511	C	A	32	52
BRCA	TCGA-B6-A0IO	IPCEF1	DEL	Frame_Shift_Del	6	154521037	TG	-	55	37
BRCA	TCGA-B6-A0IO	PLG	SNP	Missense_Mutation	6	161173261	G	A	43	88
BRCA	TCGA-B6-A0IO	WDR67	SNP	Splice_site	8	124162367	G	A	33	43
BRCA	TCGA-B6-A0IO	NEFM	SNP	Missense_Mutation	8	24774763	G	C	33	52
BRCA	TCGA-B6-A0IO	NEFM	SNP	Missense_Mutation	8	24775733	G	A	45	78
BRCA	TCGA-B6-A0IP	TMEM132A	SNP	Missense_Mutation	11	60699241	C	T	22	64
BRCA	TCGA-B6-A0IP	FOLR3	SNP	Missense_Mutation	11	71847146	G	A	37	86
BRCA	TCGA-B6-A0IP	FICD	SNP	Silent	12	108913081	G	A	48	43
BRCA	TCGA-B6-A0IP	PTPRB	INS	Splice_Site	12	70988244	-	A	61	57
BRCA	TCGA-B6-A0IP	SHF	SNP	Silent	15	45470457	A	G	7	49
BRCA	TCGA-B6-A0IP	MYO9A	SNP	Nonsense_Mutation	15	72252308	G	A	39	61
BRCA	TCGA-B6-A0IP	CDH1	DEL	Frame_Shift_Del	16	68844104	TC	-	62	43
BRCA	TCGA-B6-A0IP	NCOR1	SNP	Nonsense_Mutation	17	15973687	A	C	8	39
BRCA	TCGA-B6-A0IP	NCOR1	INS	Splice_Site	17	16055257	-	A	61	65
BRCA	TCGA-B6-A0IP	ZNF594	DEL	Frame_Shift_Del	17	5084992	AAAG	-	13	58
BRCA	TCGA-B6-A0IP	TTN	SNP	Missense_Mutation	2	179436055	T	A	50	92
BRCA	TCGA-B6-A0IP	SLC23A3	SNP	Missense_Mutation	2	220034618	T	A	52	46
BRCA	TCGA-B6-A0IP	ACTR2	SNP	Silent	2	65480893	A	G	11	50
BRCA	TCGA-B6-A0IP	DNAH6	SNP	Missense_Mutation	2	85046494	G	A	46	66
BRCA	TCGA-B6-A0IP	RETSAT	SNP	Nonsense_Mutation	2	85571790	G	A	38	58
BRCA	TCGA-B6-A0IP	MAGEA10	SNP	Nonsense_Mutation	23	151303750	C	A	30	53
BRCA	TCGA-B6-A0IP	PRAF2	SNP	Silent	23	48931491	G	A	37	47
BRCA	TCGA-B6-A0IP	MAGIX	DEL	Splice_site	23	49021699	G	-	47	53
BRCA	TCGA-B6-A0IP	PIK3CA	SNP	Missense_Mutation	3	178916876	G	A	37	97
BRCA	TCGA-B6-A0IP	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-B6-A0IP	SCN5A	SNP	Missense_Mutation	3	38651294	C	T	23	71
BRCA	TCGA-B6-A0IP	TBC1D19	SNP	Missense_Mutation	4	26750062	G	A	37	99
BRCA	TCGA-B6-A0IP	N4BP2	SNP	Missense_Mutation	4	40104198	C	A	32	58
BRCA	TCGA-B6-A0IP	C4orf50	SNP	Splice_Site	4	5982066	C	A	28	59
BRCA	TCGA-B6-A0IP	PCDHA2	SNP	Silent	5	140175827	C	T	23	32
BRCA	TCGA-B6-A0IP	AIM1	SNP	Nonsense_Mutation	6	106968546	A	T	5	70
BRCA	TCGA-B6-A0IP	MLL3	SNP	Nonsense_Mutation	7	151878506	G	A	47	84
BRCA	TCGA-B6-A0IP	FAM160B2	SNP	Missense_Mutation	8	21957342	G	A	39	63
BRCA	TCGA-B6-A0IP	FCN1	SNP	Missense_Mutation	9	137809681	C	T	27	41
BRCA	TCGA-B6-A0IQ	CERS2	SNP	Silent	1	150939291	G	A	48	61
BRCA	TCGA-B6-A0IQ	FLG2	SNP	Missense_Mutation	1	152323181	A	G	14	60
BRCA	TCGA-B6-A0IQ	OLFML2B	SNP	Silent	1	161953618	G	A	37	50
BRCA	TCGA-B6-A0IQ	UCK2	SNP	Silent	1	165872483	C	T	31	56
BRCA	TCGA-B6-A0IQ	SLC19A2	SNP	Missense_Mutation	1	169446469	G	T	33	58
BRCA	TCGA-B6-A0IQ	B3GALT2	SNP	Missense_Mutation	1	193150454	C	T	23	97
BRCA	TCGA-B6-A0IQ	MFSD4	SNP	Missense_Mutation	1	205549057	G	A	41	76
BRCA	TCGA-B6-A0IQ	CATSPER4	SNP	Missense_Mutation	1	26527420	G	A	43	57
BRCA	TCGA-B6-A0IQ	C1orf212	DEL	In_Frame_Del	1	35321061	AGATGCCTG	-	7	51
BRCA	TCGA-B6-A0IQ	TRPC6	SNP	Silent	11	101344347	G	T	33	63
BRCA	TCGA-B6-A0IQ	CCDC84	SNP	Missense_Mutation	11	118869807	A	G	7	62
BRCA	TCGA-B6-A0IQ	IFITM1	DEL	Frame_Shift_Del	11	314286	G	-	47	72
BRCA	TCGA-B6-A0IQ	OR4A15	SNP	Silent	11	55135638	T	C	56	48
BRCA	TCGA-B6-A0IQ	DDB1	SNP	Missense_Mutation	11	61068352	C	T	31	98
BRCA	TCGA-B6-A0IQ	GDPD4	SNP	Silent	11	76990360	T	A	51	50
BRCA	TCGA-B6-A0IQ	HOXC12	DEL	In_Frame_Del	12	54348878	GCCGTCGGCGGA	-	42	75
BRCA	TCGA-B6-A0IQ	A2M	SNP	Missense_Mutation	12	9256962	G	T	47	67
BRCA	TCGA-B6-A0IQ	CDC42BPB	SNP	Silent	14	103416191	G	T	37	48
BRCA	TCGA-B6-A0IQ	TRIM9	SNP	Missense_Mutation	14	51444032	A	T	11	62
BRCA	TCGA-B6-A0IQ	TJP1	DEL	Frame_Shift_Del	15	30018573	AATGTCTTACCTTTCCCTCGGAAACCCAT	-	1	51
BRCA	TCGA-B6-A0IQ	CD2BP2	DEL	Frame_Shift_Del	16	30365584	AG	-	3	53
BRCA	TCGA-B6-A0IQ	C17orf77	SNP	Missense_Mutation	17	72588188	G	T	47	52
BRCA	TCGA-B6-A0IQ	ST6GALNAC1	SNP	Missense_Mutation	17	74623252	C	T	27	46
BRCA	TCGA-B6-A0IQ	TP53	SNP	Nonsense_Mutation	17	7578212	G	A	37	66
BRCA	TCGA-B6-A0IQ	ANKRD30B	SNP	Missense_Mutation	18	14763786	C	G	19	53
BRCA	TCGA-B6-A0IQ	NOTCH3	SNP	Nonsense_Mutation	19	15272363	G	A	45	79
BRCA	TCGA-B6-A0IQ	ATP4A	SNP	Missense_Mutation	19	36051300	C	T	27	92
BRCA	TCGA-B6-A0IQ	SIPA1L3	SNP	Missense_Mutation	19	38682834	G	T	42	93
BRCA	TCGA-B6-A0IQ	CYP2B6	SNP	Missense_Mutation	19	41518287	A	G	11	84
BRCA	TCGA-B6-A0IQ	CEACAM6	SNP	Splice_site	19	42260867	C	T	23	50
BRCA	TCGA-B6-A0IQ	GPR32	SNP	Missense_Mutation	19	51274647	G	A	38	53
BRCA	TCGA-B6-A0IQ	TMC4	SNP	Missense_Mutation	19	54675769	C	T	26	45
BRCA	TCGA-B6-A0IQ	OR7D4	SNP	Silent	19	9324863	G	T	35	47
BRCA	TCGA-B6-A0IQ	ZC3H15	DEL	In_Frame_Del	2	187351168	AGG	-	3	76
BRCA	TCGA-B6-A0IQ	PMS1	SNP	Missense_Mutation	2	190682855	G	C	45	49
BRCA	TCGA-B6-A0IQ	ANKRD36C	DEL	Splice_Site	2	96619685	AC	-	14	58
BRCA	TCGA-B6-A0IQ	KCNQ2	SNP	Missense_Mutation	20	62065225	G	A	37	74
BRCA	TCGA-B6-A0IQ	ODZ1	SNP	Silent	23	123779072	T	A	63	58
BRCA	TCGA-B6-A0IQ	SMC1A	SNP	Missense_Mutation	23	53423505	C	A	32	73
BRCA	TCGA-B6-A0IQ	NR1I2	SNP	Silent	3	119531721	C	T	32	58
BRCA	TCGA-B6-A0IQ	LEKR1	SNP	Missense_Mutation	3	156742606	G	A	34	60
BRCA	TCGA-B6-A0IQ	LRRC2	DEL	Frame_Shift_Del	3	46586694	GGATGCCCTTCCTCCT	-	43	62
BRCA	TCGA-B6-A0IQ	VPRBP	SNP	Missense_Mutation	3	51458151	G	T	42	99
BRCA	TCGA-B6-A0IQ	DNAH1	DEL	Frame_Shift_Del	3	52386030	C	-	25	63
BRCA	TCGA-B6-A0IQ	TNIP2	INS	Frame_Shift_Ins	4	2746573	-	GT	31	71
BRCA	TCGA-B6-A0IQ	CTNND2	DEL	Frame_Shift_Del	5	10981909	G	-	39	53
BRCA	TCGA-B6-A0IQ	TRPC7	SNP	Missense_Mutation	5	135561796	T	G	51	75
BRCA	TCGA-B6-A0IQ	AIM1	SNP	Missense_Mutation	6	107016426	G	A	47	84
BRCA	TCGA-B6-A0IQ	DOPEY1	SNP	Nonsense_Mutation	6	83845441	C	T	19	63
BRCA	TCGA-B6-A0IQ	DGKI	SNP	Nonsense_Mutation	7	137263039	G	A	37	54
BRCA	TCGA-B6-A0IQ	PION	SNP	Silent	7	77006204	T	C	52	52
BRCA	TCGA-B6-A0IQ	DOCK5	SNP	Silent	8	25265535	G	C	40	31
BRCA	TCGA-B6-A0IQ	SFRP1	SNP	Nonsense_Mutation	8	41166389	C	T	21	94
BRCA	TCGA-B6-A0IQ	XKR9	SNP	Missense_Mutation	8	71593433	T	G	64	64
BRCA	TCGA-B6-A0IQ	ZNF462	SNP	Missense_Mutation	9	109685755	C	G	32	65
BRCA	TCGA-B6-A0IQ	PPP2R4	SNP	Missense_Mutation	9	131897091	G	T	38	91
BRCA	TCGA-B6-A0IQ	HAUS6	SNP	Missense_Mutation	9	19096764	G	C	48	58
BRCA	TCGA-B6-A0IQ	DENND4C	SNP	Missense_Mutation	9	19372133	G	C	37	75
BRCA	TCGA-B6-A0RE	LRIF1	SNP	Missense_Mutation	1	111492643	C	G	29	58
BRCA	TCGA-B6-A0RE	HIST2H2AC	SNP	Silent	1	149858596	C	A	30	46
BRCA	TCGA-B6-A0RE	PGLYRP3	SNP	Missense_Mutation	1	153271673	C	T	24	73
BRCA	TCGA-B6-A0RE	ADAM15	DEL	In_Frame_Del	1	155029738	GCT	-	34	76
BRCA	TCGA-B6-A0RE	FAM163A	SNP	Missense_Mutation	1	179783227	C	T	30	78
BRCA	TCGA-B6-A0RE	FAM163A	SNP	Silent	1	179783231	C	T	29	58
BRCA	TCGA-B6-A0RE	SWT1	SNP	Nonsense_Mutation	1	185135759	C	A	29	72
BRCA	TCGA-B6-A0RE	SWT1	SNP	Missense_Mutation	1	185153935	A	T	3	68
BRCA	TCGA-B6-A0RE	CENPF	SNP	Missense_Mutation	1	214819500	G	A	33	50
BRCA	TCGA-B6-A0RE	HSPG2	SNP	Silent	1	22179535	G	T	37	54
BRCA	TCGA-B6-A0RE	PSEN2	SNP	Silent	1	227071456	C	T	32	58
BRCA	TCGA-B6-A0RE	TRIM67	SNP	Missense_Mutation	1	231344720	C	G	32	87
BRCA	TCGA-B6-A0RE	HPDL	SNP	Missense_Mutation	1	45793708	G	C	33	50
BRCA	TCGA-B6-A0RE	CYP4A11	SNP	Silent	1	47407052	G	T	41	57
BRCA	TCGA-B6-A0RE	BRDT	SNP	Missense_Mutation	1	92428491	A	T	2	52
BRCA	TCGA-B6-A0RE	WNT8B	SNP	Missense_Mutation	10	102239712	C	T	23	74
BRCA	TCGA-B6-A0RE	ARMC4	SNP	Missense_Mutation	10	28274135	T	C	55	74
BRCA	TCGA-B6-A0RE	ZWINT	SNP	Missense_Mutation	10	58118336	T	C	58	52
BRCA	TCGA-B6-A0RE	CYP26A1	SNP	Silent	10	94834968	C	T	27	48
BRCA	TCGA-B6-A0RE	AMPD3	SNP	Missense_Mutation	11	10508798	C	T	23	63
BRCA	TCGA-B6-A0RE	EIF4G2	SNP	Missense_Mutation	11	10827548	G	A	41	100
BRCA	TCGA-B6-A0RE	CBL	SNP	Silent	11	119142562	G	A	39	41
BRCA	TCGA-B6-A0RE	ACCS	SNP	Missense_Mutation	11	44104793	C	T	28	98
BRCA	TCGA-B6-A0RE	OR10V1	SNP	Missense_Mutation	11	59481034	G	C	45	52
BRCA	TCGA-B6-A0RE	MAP4K2	SNP	Missense_Mutation	11	64568469	C	G	24	92
BRCA	TCGA-B6-A0RE	MMP17	INS	Frame_Shift_Ins	12	132325312	-	T	18	75
BRCA	TCGA-B6-A0RE	PIK3C2G	SNP	Missense_Mutation	12	18658303	T	G	51	57
BRCA	TCGA-B6-A0RE	OVCH1	SNP	Silent	12	29642562	G	A	40	49
BRCA	TCGA-B6-A0RE	KCNA5	SNP	Missense_Mutation	12	5154568	G	T	43	83
BRCA	TCGA-B6-A0RE	LRP1	SNP	Missense_Mutation	12	57592310	C	T	30	80
BRCA	TCGA-B6-A0RE	SLC2A3	SNP	Splice_site	12	8077007	T	C	56	65
BRCA	TCGA-B6-A0RE	ERCC5	SNP	Missense_Mutation	13	103506681	G	C	37	84
BRCA	TCGA-B6-A0RE	LCP1	SNP	Missense_Mutation	13	46701779	T	A	52	92
BRCA	TCGA-B6-A0RE	BAZ1A	SNP	Missense_Mutation	14	35245596	C	T	32	99
BRCA	TCGA-B6-A0RE	GNPNAT1	SNP	Missense_Mutation	14	53251239	G	C	33	96
BRCA	TCGA-B6-A0RE	ARID4A	SNP	Missense_Mutation	14	58831916	C	G	29	90
BRCA	TCGA-B6-A0RE	TGFB3	SNP	Missense_Mutation	14	76437505	C	T	17	97
BRCA	TCGA-B6-A0RE	ADAMTS17	SNP	Silent	15	100801809	C	A	18	53
BRCA	TCGA-B6-A0RE	PRTG	SNP	Missense_Mutation	15	56032653	T	A	56	62
BRCA	TCGA-B6-A0RE	RPL4	SNP	Missense_Mutation	15	66794137	C	G	29	97
BRCA	TCGA-B6-A0RE	COG7	SNP	Silent	16	23403747	G	A	41	52
BRCA	TCGA-B6-A0RE	BCKDK	DEL	In_Frame_Del	16	31122020	CGG	-	31	46
BRCA	TCGA-B6-A0RE	SEC14L5	SNP	Missense_Mutation	16	5009367	C	T	22	73
BRCA	TCGA-B6-A0RE	DPEP3	SNP	Silent	16	68010014	G	C	33	63
BRCA	TCGA-B6-A0RE	CHST5	SNP	Missense_Mutation	16	75563873	C	T	31	55
BRCA	TCGA-B6-A0RE	PSMD3	SNP	Silent	17	38140605	C	T	31	47
BRCA	TCGA-B6-A0RE	KRT222	SNP	Missense_Mutation	17	38816255	C	G	32	98
BRCA	TCGA-B6-A0RE	MAPT	SNP	Missense_Mutation	17	44055781	C	G	19	66
BRCA	TCGA-B6-A0RE	SP6	SNP	Silent	17	45925604	C	G	27	15
BRCA	TCGA-B6-A0RE	TP53	DEL	Frame_Shift_Del	17	7577031	T	-	54	69
BRCA	TCGA-B6-A0RE	MYO5B	SNP	Missense_Mutation	18	47500828	G	A	38	100
BRCA	TCGA-B6-A0RE	CDH19	SNP	Missense_Mutation	18	64197168	C	G	17	59
BRCA	TCGA-B6-A0RE	C19orf43	SNP	Missense_Mutation	19	12841864	C	T	29	96
BRCA	TCGA-B6-A0RE	PDE4C	SNP	Missense_Mutation	19	18322580	C	G	30	94
BRCA	TCGA-B6-A0RE	LSM4	DEL	Frame_Shift_Del	19	18426844	T	-	52	84
BRCA	TCGA-B6-A0RE	ZNF714	SNP	Silent	19	21299680	G	C	45	47
BRCA	TCGA-B6-A0RE	DOT1L	SNP	Silent	19	2220127	G	T	46	58
BRCA	TCGA-B6-A0RE	C19orf29	SNP	Splice_site	19	3620705	C	G	24	79
BRCA	TCGA-B6-A0RE	PIAS4	SNP	Missense_Mutation	19	4013263	G	A	38	43
BRCA	TCGA-B6-A0RE	ZNF526	SNP	Missense_Mutation	19	42730170	C	G	17	82
BRCA	TCGA-B6-A0RE	PSG9	SNP	Silent	19	43772123	C	T	19	34
BRCA	TCGA-B6-A0RE	RSPH6A	SNP	Silent	19	46307798	G	A	45	57
BRCA	TCGA-B6-A0RE	EHD2	SNP	Missense_Mutation	19	48229232	C	G	17	76
BRCA	TCGA-B6-A0RE	KLK5	SNP	Silent	19	51452296	G	C	45	66
BRCA	TCGA-B6-A0RE	FCAR	SNP	Silent	19	55399642	C	G	24	66
BRCA	TCGA-B6-A0RE	EPS8L1	SNP	Splice_site	19	55598981	G	C	45	81
BRCA	TCGA-B6-A0RE	NLRP5	SNP	Missense_Mutation	19	56565089	C	A	32	70
BRCA	TCGA-B6-A0RE	SULT1C3	SNP	Missense_Mutation	2	108881768	G	C	33	54
BRCA	TCGA-B6-A0RE	CCDC138	SNP	Silent	2	109408173	G	A	35	57
BRCA	TCGA-B6-A0RE	APOB	SNP	Nonsense_Mutation	2	21241873	G	A	45	75
BRCA	TCGA-B6-A0RE	ENTPD6	SNP	Missense_Mutation	20	25198181	G	A	39	62
BRCA	TCGA-B6-A0RE	RBPJL	SNP	Splice_Site	20	43942673	A	T	7	71
BRCA	TCGA-B6-A0RE	SLC2A10	SNP	Missense_Mutation	20	45354529	T	C	55	71
BRCA	TCGA-B6-A0RE	TSPEAR	SNP	Missense_Mutation	21	45948407	G	T	47	80
BRCA	TCGA-B6-A0RE	GLA	SNP	Missense_Mutation	23	100658891	C	G	29	100
BRCA	TCGA-B6-A0RE	GPRASP2	SNP	Missense_Mutation	23	101970816	T	G	60	59
BRCA	TCGA-B6-A0RE	LAMP2	SNP	Silent	23	119565295	G	A	40	50
BRCA	TCGA-B6-A0RE	AFF2	SNP	Silent	23	148037858	T	C	57	60
BRCA	TCGA-B6-A0RE	MAGED1	SNP	Missense_Mutation	23	51638295	C	A	17	50
BRCA	TCGA-B6-A0RE	FANCD2	SNP	Missense_Mutation	3	10107101	C	T	28	79
BRCA	TCGA-B6-A0RE	ALDH1L1	SNP	Missense_Mutation	3	125877412	C	G	25	51
BRCA	TCGA-B6-A0RE	IFT122	SNP	Missense_Mutation	3	129225321	C	G	27	65
BRCA	TCGA-B6-A0RE	SLCO2A1	SNP	Nonsense_Mutation	3	133661572	G	T	45	73
BRCA	TCGA-B6-A0RE	SLCO2A1	SNP	Missense_Mutation	3	133667494	C	G	18	62
BRCA	TCGA-B6-A0RE	NUP210	SNP	Splice_site	3	13377110	C	T	19	22
BRCA	TCGA-B6-A0RE	RAP2B	SNP	Missense_Mutation	3	152880727	A	G	14	87
BRCA	TCGA-B6-A0RE	VPS8	SNP	Missense_Mutation	3	184577834	A	G	16	68
BRCA	TCGA-B6-A0RE	UBA7	SNP	Missense_Mutation	3	49845531	G	T	36	58
BRCA	TCGA-B6-A0RE	ALAS1	SNP	Silent	3	52239960	G	C	41	47
BRCA	TCGA-B6-A0RE	CRYBG3	SNP	Missense_Mutation	3	97598935	T	C	57	78
BRCA	TCGA-B6-A0RE	GABRR3	SNP	Silent	3	97731370	G	C	40	53
BRCA	TCGA-B6-A0RE	LARS	SNP	Silent	5	145539015	C	T	31	47
BRCA	TCGA-B6-A0RE	STK10	SNP	Missense_Mutation	5	171520913	T	A	63	43
BRCA	TCGA-B6-A0RE	SLC34A1	SNP	Silent	5	176814833	C	T	31	45
BRCA	TCGA-B6-A0RE	PLK2	DEL	In_Frame_Del	5	57750417	CATCTT	-	17	99
BRCA	TCGA-B6-A0RE	PLK2	SNP	Missense_Mutation	5	57750425	T	A	57	68
BRCA	TCGA-B6-A0RE	LAMA4	SNP	Missense_Mutation	6	112437070	C	A	30	92
BRCA	TCGA-B6-A0RE	MYB	SNP	Missense_Mutation	6	135520054	C	G	17	72
BRCA	TCGA-B6-A0RE	UTRN	SNP	Missense_Mutation	6	144837401	G	T	44	63
BRCA	TCGA-B6-A0RE	CCHCR1	SNP	Missense_Mutation	6	31117874	T	C	59	61
BRCA	TCGA-B6-A0RE	ITPR3	SNP	Silent	6	33589421	C	T	32	52
BRCA	TCGA-B6-A0RE	IP6K3	SNP	Missense_Mutation	6	33693353	A	T	12	29
BRCA	TCGA-B6-A0RE	RSPH9	SNP	Missense_Mutation	6	43624412	G	A	41	77
BRCA	TCGA-B6-A0RE	RREB1	SNP	Missense_Mutation	6	7229968	C	T	26	75
BRCA	TCGA-B6-A0RE	SLC13A1	SNP	Missense_Mutation	7	122759197	A	T	1	60
BRCA	TCGA-B6-A0RE	ASB15	SNP	Splice_site	7	123256326	A	G	3	71
BRCA	TCGA-B6-A0RE	ZC3HC1	SNP	Nonsense_Mutation	7	129663533	G	A	37	57
BRCA	TCGA-B6-A0RE	TRPV6	SNP	Silent	7	142573589	G	C	33	47
BRCA	TCGA-B6-A0RE	ABCF2	SNP	Missense_Mutation	7	150913108	G	T	43	99
BRCA	TCGA-B6-A0RE	DNAH11	SNP	Missense_Mutation	7	21609696	T	A	61	86
BRCA	TCGA-B6-A0RE	CLK2P	SNP	Missense_Mutation	7	23625479	G	T	36	64
BRCA	TCGA-B6-A0RE	HECW1	SNP	Silent	7	43548589	G	A	38	47
BRCA	TCGA-B6-A0RE	ABCA13	SNP	Missense_Mutation	7	48285575	A	G	2	44
BRCA	TCGA-B6-A0RE	STEAP4	SNP	Silent	7	87910332	C	G	21	46
BRCA	TCGA-B6-A0RE	TRRAP	SNP	Silent	7	98528369	G	A	34	63
BRCA	TCGA-B6-A0RE	COL22A1	SNP	Silent	8	139703109	G	A	39	51
BRCA	TCGA-B6-A0RE	BAI1	SNP	Missense_Mutation	8	143569787	T	G	55	71
BRCA	TCGA-B6-A0RE	BNIP3L	DNP	Missense_Mutation	8	26265560	GA	TG	45	65
BRCA	TCGA-B6-A0RE	FZD3	SNP	Missense_Mutation	8	28413307	C	A	32	95
BRCA	TCGA-B6-A0RE	EXTL3	INS	Frame_Shift_Ins	8	28574385	-	C	41	99
BRCA	TCGA-B6-A0RE	MCM4	SNP	Silent	8	48887464	G	A	45	45
BRCA	TCGA-B6-A0RE	RP1	SNP	Missense_Mutation	8	55537315	C	A	20	45
BRCA	TCGA-B6-A0RE	LAPTM4B	SNP	Nonsense_Mutation	8	98817648	C	G	29	84
BRCA	TCGA-B6-A0RE	C9orf174	SNP	Missense_Mutation	9	100075583	A	C	11	48
BRCA	TCGA-B6-A0RE	HEMGN	SNP	Missense_Mutation	9	100689708	C	G	32	52
BRCA	TCGA-B6-A0RE	ZFP37	SNP	Missense_Mutation	9	115818872	C	G	30	58
BRCA	TCGA-B6-A0RG	VANGL2	SNP	Missense_Mutation	1	160390918	C	G	17	58
BRCA	TCGA-B6-A0RG	CDK18	DEL	Frame_Shift_Del	1	205493367	G	-	34	62
BRCA	TCGA-B6-A0RG	AVPR1B	SNP	Missense_Mutation	1	206230900	C	G	24	85
BRCA	TCGA-B6-A0RG	TARBP1	SNP	Missense_Mutation	1	234565000	C	G	28	86
BRCA	TCGA-B6-A0RG	ARID1A	SNP	Nonsense_Mutation	1	27106498	C	T	17	66
BRCA	TCGA-B6-A0RG	TINAGL1	SNP	Missense_Mutation	1	32051469	G	C	33	79
BRCA	TCGA-B6-A0RG	MARCKSL1	SNP	Missense_Mutation	1	32800430	G	C	41	68
BRCA	TCGA-B6-A0RG	CUBN	SNP	Silent	10	16975114	A	G	6	51
BRCA	TCGA-B6-A0RG	ARHGAP12	SNP	Missense_Mutation	10	32143011	C	T	29	98
BRCA	TCGA-B6-A0RG	IGSF9B	SNP	Missense_Mutation	11	133791281	C	T	26	93
BRCA	TCGA-B6-A0RG	RAG1	SNP	Missense_Mutation	11	36595870	A	T	10	89
BRCA	TCGA-B6-A0RG	TRIM21	SNP	Missense_Mutation	11	4410964	C	T	26	56
BRCA	TCGA-B6-A0RG	B3GAT3	SNP	Missense_Mutation	11	62383253	G	A	37	68
BRCA	TCGA-B6-A0RG	FAM71C	SNP	Missense_Mutation	12	100042152	G	A	37	42
BRCA	TCGA-B6-A0RG	UTP20	SNP	Missense_Mutation	12	101748696	A	G	11	52
BRCA	TCGA-B6-A0RG	PZP	SNP	Missense_Mutation	12	9307416	C	G	28	49
BRCA	TCGA-B6-A0RG	PARP4	SNP	Missense_Mutation	13	25023909	C	A	25	69
BRCA	TCGA-B6-A0RG	PARP4	SNP	Missense_Mutation	13	25034250	T	A	64	82
BRCA	TCGA-B6-A0RG	CYSLTR2	SNP	Silent	13	49281046	C	T	25	55
BRCA	TCGA-B6-A0RG	HECTD1	SNP	Missense_Mutation	14	31597881	G	C	33	68
BRCA	TCGA-B6-A0RG	ANPEP	SNP	Missense_Mutation	15	90349748	C	T	19	40
BRCA	TCGA-B6-A0RG	SYNM	SNP	Nonsense_Mutation	15	99671359	G	T	37	79
BRCA	TCGA-B6-A0RG	KIAA0430	DEL	Frame_Shift_Del	16	15727535	ATGA	-	12	92
BRCA	TCGA-B6-A0RG	TNRC6A	SNP	Missense_Mutation	16	24831678	C	T	22	84
BRCA	TCGA-B6-A0RG	CHD9	SNP	Silent	16	53308140	G	A	45	45
BRCA	TCGA-B6-A0RG	ZFHX3	SNP	Missense_Mutation	16	72832049	C	A	22	100
BRCA	TCGA-B6-A0RG	EMC8	SNP	Missense_Mutation	16	85822653	C	G	29	98
BRCA	TCGA-B6-A0RG	MAP2K4	DEL	Frame_Shift_Del	17	12016647	AA	-	5	48
BRCA	TCGA-B6-A0RG	HOXB3	SNP	Silent	17	46628038	C	T	27	50
BRCA	TCGA-B6-A0RG	MKS1	SNP	Missense_Mutation	17	56285876	T	C	52	54
BRCA	TCGA-B6-A0RG	PIAS2	SNP	Missense_Mutation	18	44392457	C	G	20	65
BRCA	TCGA-B6-A0RG	IL27RA	SNP	Missense_Mutation	19	14143218	T	G	59	67
BRCA	TCGA-B6-A0RG	FKBP8	SNP	Missense_Mutation	19	18652645	C	G	32	62
BRCA	TCGA-B6-A0RG	ZNF347	SNP	Missense_Mutation	19	53645287	C	G	30	45
BRCA	TCGA-B6-A0RG	FUT3	SNP	Missense_Mutation	19	5843908	G	T	39	37
BRCA	TCGA-B6-A0RG	NEB	SNP	Missense_Mutation	2	152381061	T	C	62	92
BRCA	TCGA-B6-A0RG	KBTBD10	SNP	Missense_Mutation	2	170382147	G	T	46	98
BRCA	TCGA-B6-A0RG	PDE1A	SNP	Missense_Mutation	2	183051216	G	A	36	46
BRCA	TCGA-B6-A0RG	ERBB4	SNP	Missense_Mutation	2	212488741	G	T	48	100
BRCA	TCGA-B6-A0RG	SP140	SNP	Silent	2	231110630	C	G	21	51
BRCA	TCGA-B6-A0RG	MTIF2	SNP	Splice_site	2	55490776	C	G	24	71
BRCA	TCGA-B6-A0RG	DNMT3B	SNP	Missense_Mutation	20	31393152	T	C	49	63
BRCA	TCGA-B6-A0RG	TSSK2	SNP	Missense_Mutation	22	19119973	G	A	43	55
BRCA	TCGA-B6-A0RG	LZTR1	DEL	Frame_Shift_Del	22	21350992	T	-	60	89
BRCA	TCGA-B6-A0RG	NRK	DEL	Frame_Shift_Del	23	105190375	GATTTTCTTCAGCTCAGCAGATG	-	33	57
BRCA	TCGA-B6-A0RG	ACSL4	SNP	Missense_Mutation	23	108921590	G	C	36	82
BRCA	TCGA-B6-A0RG	RNF113A	SNP	Silent	23	119005193	G	A	38	42
BRCA	TCGA-B6-A0RG	ATR	SNP	Silent	3	142231145	T	C	52	55
BRCA	TCGA-B6-A0RG	PLCH1	SNP	Silent	3	155203418	G	T	40	99
BRCA	TCGA-B6-A0RG	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-B6-A0RG	DGKG	SNP	Silent	3	186015250	A	G	16	42
BRCA	TCGA-B6-A0RG	ZNF852	DEL	Frame_Shift_Del	3	44540795	C	-	32	74
BRCA	TCGA-B6-A0RG	DCBLD2	SNP	Silent	3	98538119	C	A	27	50
BRCA	TCGA-B6-A0RG	CAMK2D	SNP	Missense_Mutation	4	114378512	C	T	22	100
BRCA	TCGA-B6-A0RG	SPINK13	SNP	Missense_Mutation	5	147661790	C	G	17	55
BRCA	TCGA-B6-A0RG	PLEKHG4B	SNP	Missense_Mutation	5	169511	G	A	39	74
BRCA	TCGA-B6-A0RG	PPT2	SNP	Missense_Mutation	6	32130348	C	G	32	54
BRCA	TCGA-B6-A0RG	CUL9	SNP	Missense_Mutation	6	43171720	C	G	32	51
BRCA	TCGA-B6-A0RG	MYO6	SNP	Missense_Mutation	6	76576288	G	C	37	100
BRCA	TCGA-B6-A0RG	PIK3CG	SNP	Silent	7	106522642	T	A	59	45
BRCA	TCGA-B6-A0RG	CFTR	SNP	Nonsense_Mutation	7	117188875	A	T	5	87
BRCA	TCGA-B6-A0RG	ZNF746	SNP	Missense_Mutation	7	149171728	G	A	40	97
BRCA	TCGA-B6-A0RG	POU6F2	SNP	Missense_Mutation	7	39247072	C	G	24	100
BRCA	TCGA-B6-A0RG	ADCY8	SNP	Missense_Mutation	8	131793094	C	T	19	100
BRCA	TCGA-B6-A0RG	PTPRD	SNP	Missense_Mutation	9	8341823	T	G	51	94
BRCA	TCGA-B6-A0RG	ZCCHC6	SNP	Missense_Mutation	9	88938364	C	G	32	48
BRCA	TCGA-B6-A0RH	PTPN22	SNP	Missense_Mutation	1	114397570	A	C	2	51
BRCA	TCGA-B6-A0RH	TARS2	SNP	Missense_Mutation	1	150479529	G	A	33	69
BRCA	TCGA-B6-A0RH	MIA3	SNP	Silent	1	222801435	G	A	33	55
BRCA	TCGA-B6-A0RH	PSEN2	SNP	Missense_Mutation	1	227069706	A	G	11	71
BRCA	TCGA-B6-A0RH	EPHB2	SNP	Missense_Mutation	1	23222000	C	T	20	96
BRCA	TCGA-B6-A0RH	TSPAN1	SNP	Missense_Mutation	1	46650495	C	G	29	54
BRCA	TCGA-B6-A0RH	KAT6B	SNP	Missense_Mutation	10	76739051	G	A	45	100
BRCA	TCGA-B6-A0RH	DEPDC7	SNP	Nonsense_Mutation	11	33047294	C	T	19	76
BRCA	TCGA-B6-A0RH	TBK1	SNP	Silent	12	64875760	A	G	2	63
BRCA	TCGA-B6-A0RH	CLEC4E	DEL	Frame_Shift_Del	12	8692538	CT	-	24	48
BRCA	TCGA-B6-A0RH	CLEC4E	SNP	Splice_site	12	8692543	T	A	54	51
BRCA	TCGA-B6-A0RH	RTL1	SNP	Missense_Mutation	14	101348922	A	G	10	79
BRCA	TCGA-B6-A0RH	SYNE2	SNP	Silent	14	64636985	G	A	44	52
BRCA	TCGA-B6-A0RH	TMC5	SNP	Missense_Mutation	16	19451502	C	G	22	50
BRCA	TCGA-B6-A0RH	MAP2K4	INS	Splice_Site	17	12011227	-	T	36	98
BRCA	TCGA-B6-A0RH	RNF135	SNP	Missense_Mutation	17	29325839	C	T	32	67
BRCA	TCGA-B6-A0RH	KRT28	SNP	Missense_Mutation	17	38954517	C	G	32	56
BRCA	TCGA-B6-A0RH	TP53	SNP	Missense_Mutation	17	7578190	T	G	49	88
BRCA	TCGA-B6-A0RH	BAHCC1	SNP	Missense_Mutation	17	79422327	G	C	41	79
BRCA	TCGA-B6-A0RH	WDR7	SNP	Missense_Mutation	18	54385232	A	T	10	92
BRCA	TCGA-B6-A0RH	C19orf40	SNP	Splice_Site	19	33464469	G	A	48	91
BRCA	TCGA-B6-A0RH	PPP1R14A	DEL	Frame_Shift_Del	19	38743550	CTCTC	-	32	72
BRCA	TCGA-B6-A0RH	DTNB	SNP	Nonsense_Mutation	2	25861892	G	A	40	59
BRCA	TCGA-B6-A0RH	COL18A1	SNP	Missense_Mutation	21	46888236	G	A	37	59
BRCA	TCGA-B6-A0RH	LOC100288508	INS	Frame_Shift_Ins	21	47546385	-	GGCCC	55	47
BRCA	TCGA-B6-A0RH	VPREB1	SNP	Silent	22	22599458	C	T	31	44
BRCA	TCGA-B6-A0RH	UPK3A	SNP	Missense_Mutation	22	45681971	G	A	37	55
BRCA	TCGA-B6-A0RH	PARP14	SNP	Missense_Mutation	3	122399872	C	T	30	64
BRCA	TCGA-B6-A0RH	SI	SNP	Nonsense_Mutation	3	164716394	G	A	40	58
BRCA	TCGA-B6-A0RH	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-B6-A0RH	IP6K2	INS	Frame_Shift_Ins	3	48732632	-	C	38	43
BRCA	TCGA-B6-A0RH	GPR125	SNP	Missense_Mutation	4	22390523	G	A	42	75
BRCA	TCGA-B6-A0RH	SEC24A	SNP	Silent	5	134059307	C	T	29	49
BRCA	TCGA-B6-A0RH	PDGFRB	SNP	Missense_Mutation	5	149510159	C	T	19	61
BRCA	TCGA-B6-A0RH	SH3PXD2B	SNP	Missense_Mutation	5	171766429	A	C	1	35
BRCA	TCGA-B6-A0RH	AGGF1	SNP	Missense_Mutation	5	76349814	G	A	40	51
BRCA	TCGA-B6-A0RH	FAM71F2	SNP	Silent	7	128317709	C	T	32	52
BRCA	TCGA-B6-A0RH	CSGALNACT1	SNP	Missense_Mutation	8	19263493	C	T	23	96
BRCA	TCGA-B6-A0RH	SVEP1	SNP	Missense_Mutation	9	113169979	A	G	1	53
BRCA	TCGA-B6-A0RH	SMARCA2	SNP	Missense_Mutation	9	2116045	A	G	4	93
BRCA	TCGA-B6-A0RH	FAM75D1	SNP	Missense_Mutation	9	84605378	G	T	41	52
BRCA	TCGA-B6-A0RH	CTSL2	SNP	Missense_Mutation	9	99798887	C	G	18	91
BRCA	TCGA-B6-A0RI	WNT2B	SNP	Missense_Mutation	1	113057615	G	A	37	66
BRCA	TCGA-B6-A0RI	SPEN	SNP	Missense_Mutation	1	16263797	C	G	30	75
BRCA	TCGA-B6-A0RI	PKN2	SNP	Nonsense_Mutation	1	89299057	C	T	31	73
BRCA	TCGA-B6-A0RI	CALCA	SNP	Splice_Site	11	14991622	C	T	24	93
BRCA	TCGA-B6-A0RI	OR56B4	INS	In_Frame_Ins	11	6129525	-	ACT	17	42
BRCA	TCGA-B6-A0RI	UTP20	SNP	Missense_Mutation	12	101723202	C	T	29	100
BRCA	TCGA-B6-A0RI	TBX3	INS	Frame_Shift_Ins	12	115117430	-	T	44	69
BRCA	TCGA-B6-A0RI	SPG20	SNP	Silent	13	36886475	T	G	53	52
BRCA	TCGA-B6-A0RI	CTCF	SNP	Splice_Site	16	67645518	T	G	57	91
BRCA	TCGA-B6-A0RI	ZC3H18	DEL	Frame_Shift_Del	16	88690436	A	-	5	80
BRCA	TCGA-B6-A0RI	MAP2K4	DEL	Frame_Shift_Del	17	12016657	GGCTGTA	-	47	94
BRCA	TCGA-B6-A0RI	USP36	SNP	Missense_Mutation	17	76799549	C	T	27	47
BRCA	TCGA-B6-A0RI	MSTN	SNP	Silent	2	190922215	G	A	37	50
BRCA	TCGA-B6-A0RI	CYP2D7P1	SNP	Silent	22	42537329	C	T	31	71
BRCA	TCGA-B6-A0RI	THOC2	SNP	Silent	23	122830573	G	C	33	42
BRCA	TCGA-B6-A0RI	IL21	SNP	Splice_site	4	123536991	G	T	48	48
BRCA	TCGA-B6-A0RI	LRBA	SNP	Silent	4	151392804	C	T	20	50
BRCA	TCGA-B6-A0RI	FTMT	SNP	Silent	5	121187814	C	T	23	46
BRCA	TCGA-B6-A0RI	SLC26A4	INS	Frame_Shift_Ins	7	107342369	-	A	49	87
BRCA	TCGA-B6-A0RI	GCK	SNP	Splice_site	7	44198720	C	G	32	48
BRCA	TCGA-B6-A0RI	FAM49B	SNP	Missense_Mutation	8	130891697	A	C	3	89
BRCA	TCGA-B6-A0RI	ABCA1	SNP	Missense_Mutation	9	107550711	C	G	26	89
BRCA	TCGA-B6-A0RL	AGL	SNP	Missense_Mutation	1	100366362	C	T	21	98
BRCA	TCGA-B6-A0RL	ESRRG	SNP	Missense_Mutation	1	216692549	C	T	29	100
BRCA	TCGA-B6-A0RL	AKT3	SNP	Nonsense_Mutation	1	243716070	G	T	45	100
BRCA	TCGA-B6-A0RL	PODN	SNP	Missense_Mutation	1	53537256	G	A	39	57
BRCA	TCGA-B6-A0RL	GBP2	SNP	Nonsense_Mutation	1	89575880	G	A	45	55
BRCA	TCGA-B6-A0RL	MKI67	SNP	Missense_Mutation	10	129913650	T	C	54	57
BRCA	TCGA-B6-A0RL	ATM	SNP	Missense_Mutation	11	108200961	G	A	37	82
BRCA	TCGA-B6-A0RL	GTF2H1	SNP	Missense_Mutation	11	18387353	G	A	46	95
BRCA	TCGA-B6-A0RL	ANO3	SNP	Missense_Mutation	11	26463534	G	A	46	77
BRCA	TCGA-B6-A0RL	NLRP6	SNP	Silent	11	285169	G	T	47	51
BRCA	TCGA-B6-A0RL	PAMR1	SNP	Missense_Mutation	11	35454047	G	A	43	100
BRCA	TCGA-B6-A0RL	F2	SNP	Missense_Mutation	11	46750305	G	T	46	100
BRCA	TCGA-B6-A0RL	CACNA1C	SNP	Missense_Mutation	12	2787007	G	A	38	97
BRCA	TCGA-B6-A0RL	CHAC1	SNP	Missense_Mutation	15	41247950	A	C	11	62
BRCA	TCGA-B6-A0RL	SLTM	SNP	Silent	15	59182618	G	C	46	60
BRCA	TCGA-B6-A0RL	HCN4	SNP	Silent	15	73636011	G	A	37	59
BRCA	TCGA-B6-A0RL	GSPT1	SNP	Missense_Mutation	16	11984967	G	A	40	95
BRCA	TCGA-B6-A0RL	C16orf54	SNP	Missense_Mutation	16	29755702	G	A	38	53
BRCA	TCGA-B6-A0RL	FBXL19	SNP	Missense_Mutation	16	30936072	G	A	39	74
BRCA	TCGA-B6-A0RL	TEX2	SNP	Missense_Mutation	17	62290439	A	G	16	28
BRCA	TCGA-B6-A0RL	HGS	SNP	Missense_Mutation	17	79663674	G	A	38	80
BRCA	TCGA-B6-A0RL	THOC1	SNP	Missense_Mutation	18	259687	C	T	25	79
BRCA	TCGA-B6-A0RL	PLVAP	SNP	Silent	19	17476158	C	T	23	43
BRCA	TCGA-B6-A0RL	PRKCG	SNP	Missense_Mutation	19	54392993	G	A	45	94
BRCA	TCGA-B6-A0RL	DHRS9	DEL	Frame_Shift_Del	2	169948337	A	-	8	90
BRCA	TCGA-B6-A0RL	TRAK2	SNP	Missense_Mutation	2	202254601	T	G	52	56
BRCA	TCGA-B6-A0RL	UNC80	SNP	Missense_Mutation	2	210685368	G	A	39	83
BRCA	TCGA-B6-A0RL	SLC4A3	SNP	Silent	2	220494977	C	T	25	71
BRCA	TCGA-B6-A0RL	CHGB	SNP	Missense_Mutation	20	5904101	G	T	33	51
BRCA	TCGA-B6-A0RL	COL18A1	SNP	Missense_Mutation	21	46917566	G	A	39	82
BRCA	TCGA-B6-A0RL	CCDC116	SNP	Missense_Mutation	22	21990886	C	G	24	63
BRCA	TCGA-B6-A0RL	TRIOBP	SNP	Missense_Mutation	22	38120815	G	A	39	51
BRCA	TCGA-B6-A0RL	EP300	SNP	Nonsense_Mutation	22	41545099	C	T	29	97
BRCA	TCGA-B6-A0RL	VBP1	SNP	Missense_Mutation	23	154444844	G	A	40	60
BRCA	TCGA-B6-A0RL	PQBP1	SNP	Missense_Mutation	23	48759265	G	A	45	89
BRCA	TCGA-B6-A0RL	PQBP1	SNP	Splice_Site	23	48759509	G	C	33	75
BRCA	TCGA-B6-A0RL	PQBP1	SNP	Missense_Mutation	23	48759764	G	A	41	84
BRCA	TCGA-B6-A0RL	PHF8	SNP	Silent	23	54069156	G	A	35	52
BRCA	TCGA-B6-A0RL	SHROOM2	SNP	Missense_Mutation	23	9914895	G	A	39	93
BRCA	TCGA-B6-A0RL	SIDT1	SNP	Silent	3	113286552	G	A	34	67
BRCA	TCGA-B6-A0RL	GRAMD1C	SNP	Missense_Mutation	3	113656968	C	G	32	56
BRCA	TCGA-B6-A0RL	RBM6	SNP	Splice_site	3	50000075	A	T	12	76
BRCA	TCGA-B6-A0RL	CNTN3	SNP	Missense_Mutation	3	74350659	A	G	14	78
BRCA	TCGA-B6-A0RL	PPARGC1A	SNP	Missense_Mutation	4	23830085	C	A	28	80
BRCA	TCGA-B6-A0RL	HGFAC	SNP	Missense_Mutation	4	3449688	G	A	46	93
BRCA	TCGA-B6-A0RL	YIPF7	SNP	Silent	4	44626683	G	A	38	49
BRCA	TCGA-B6-A0RL	MTHFD2L	SNP	Silent	4	75147227	G	A	45	49
BRCA	TCGA-B6-A0RL	DGKQ	SNP	Silent	4	956304	G	A	45	52
BRCA	TCGA-B6-A0RL	SLC6A18	DEL	Frame_Shift_Del	5	1235615	G	-	35	57
BRCA	TCGA-B6-A0RL	PCDHGB6	SNP	Missense_Mutation	5	140789195	G	A	38	82
BRCA	TCGA-B6-A0RL	SH3RF2	SNP	Missense_Mutation	5	145383714	G	A	33	99
BRCA	TCGA-B6-A0RL	NOP16	SNP	Missense_Mutation	5	175812286	G	A	36	56
BRCA	TCGA-B6-A0RL	CAPZA2	SNP	Silent	7	116557813	G	A	39	55
BRCA	TCGA-B6-A0RL	DLGAP2	SNP	Missense_Mutation	8	1626541	C	T	27	86
BRCA	TCGA-B6-A0RL	CHCHD7	SNP	Silent	8	57129964	C	T	32	53
BRCA	TCGA-B6-A0RL	PAEP	SNP	Missense_Mutation	9	138456093	C	T	19	51
BRCA	TCGA-B6-A0RM	NGF	SNP	Silent	1	115829015	C	T	23	45
BRCA	TCGA-B6-A0RM	RGSL1	SNP	Missense_Mutation	1	182442910	G	A	40	32
BRCA	TCGA-B6-A0RM	KIF2C	SNP	Silent	1	45221633	G	A	41	55
BRCA	TCGA-B6-A0RM	NASP	SNP	Missense_Mutation	1	46080700	C	T	28	97
BRCA	TCGA-B6-A0RM	GSTO2	SNP	Missense_Mutation	10	106057391	A	G	12	75
BRCA	TCGA-B6-A0RM	GRIK4	SNP	Missense_Mutation	11	120531052	G	T	44	71
BRCA	TCGA-B6-A0RM	IGSF22	SNP	Missense_Mutation	11	18738496	C	T	27	56
BRCA	TCGA-B6-A0RM	OR51D1	SNP	Missense_Mutation	11	4661784	T	C	50	55
BRCA	TCGA-B6-A0RM	INPPL1	SNP	Silent	11	71943727	C	T	29	58
BRCA	TCGA-B6-A0RM	NEK5	SNP	Missense_Mutation	13	52676092	C	T	31	36
BRCA	TCGA-B6-A0RM	RTN1	DEL	Frame_Shift_Del	14	60212850	AATGTATTTATAGG	-	5	58
BRCA	TCGA-B6-A0RM	FAM71D	SNP	Silent	14	67675050	A	G	1	43
BRCA	TCGA-B6-A0RM	YLPM1	SNP	Missense_Mutation	14	75264488	C	T	30	68
BRCA	TCGA-B6-A0RM	SAMD15	SNP	Missense_Mutation	14	77844471	A	G	1	48
BRCA	TCGA-B6-A0RM	SPTBN5	SNP	Silent	15	42143319	G	A	45	44
BRCA	TCGA-B6-A0RM	TBC1D21	SNP	Missense_Mutation	15	74181422	T	A	52	50
BRCA	TCGA-B6-A0RM	FES	SNP	Missense_Mutation	15	91436376	G	T	48	100
BRCA	TCGA-B6-A0RM	ST3GAL2	SNP	Silent	16	70432269	G	A	39	14
BRCA	TCGA-B6-A0RM	SLC35G3	SNP	Missense_Mutation	17	33521200	C	A	26	60
BRCA	TCGA-B6-A0RM	KANSL1	SNP	Nonsense_Mutation	17	44171973	G	A	37	78
BRCA	TCGA-B6-A0RM	ITGB4	SNP	Splice_site	17	73733725	G	A	35	72
BRCA	TCGA-B6-A0RM	ZNF585B	SNP	Missense_Mutation	19	37677742	C	T	29	57
BRCA	TCGA-B6-A0RM	LGALS14	SNP	Missense_Mutation	19	40197252	C	T	26	49
BRCA	TCGA-B6-A0RM	LILRA3	SNP	Missense_Mutation	19	54803118	C	T	19	43
BRCA	TCGA-B6-A0RM	KIR3DX1	SNP	Missense_Mutation	19	55048304	G	A	39	61
BRCA	TCGA-B6-A0RM	NAB1	DEL	Frame_Shift_Del	2	191524294	C	-	28	57
BRCA	TCGA-B6-A0RM	CACNA1I	SNP	Silent	22	40045729	C	T	27	54
BRCA	TCGA-B6-A0RM	HRASLS	SNP	Missense_Mutation	3	192988414	G	A	40	61
BRCA	TCGA-B6-A0RM	SLC6A20	SNP	Silent	3	45812813	G	A	45	65
BRCA	TCGA-B6-A0RM	MAP3K1	SNP	Nonsense_Mutation	5	56168719	C	T	25	91
BRCA	TCGA-B6-A0RM	MAP3K1	SNP	Missense_Mutation	5	56184097	T	A	59	56
BRCA	TCGA-B6-A0RM	KIF13A	SNP	Splice_site	6	17777584	G	A	42	85
BRCA	TCGA-B6-A0RM	TRPS1	DEL	Frame_Shift_Del	8	116632154	TTCTGACATC	-	64	89
BRCA	TCGA-B6-A0RM	TRPS1	DEL	In_Frame_Del	8	116632168	CTG	-	32	91
BRCA	TCGA-B6-A0RN	ASPM	SNP	Silent	1	197059075	C	T	25	57
BRCA	TCGA-B6-A0RN	CEP170	SNP	Missense_Mutation	1	243289876	G	A	33	66
BRCA	TCGA-B6-A0RN	PANK4	SNP	Missense_Mutation	1	2453186	T	C	63	69
BRCA	TCGA-B6-A0RN	JUN	DEL	Frame_Shift_Del	1	59248498	T	-	55	88
BRCA	TCGA-B6-A0RN	GBP1	DEL	In_Frame_Del	1	89521803	CTT	-	20	51
BRCA	TCGA-B6-A0RN	HFM1	SNP	Missense_Mutation	1	91727807	A	G	2	53
BRCA	TCGA-B6-A0RN	USP54	SNP	Missense_Mutation	10	75276172	C	G	22	58
BRCA	TCGA-B6-A0RN	CASC1	SNP	Missense_Mutation	12	25307302	G	T	48	54
BRCA	TCGA-B6-A0RN	LOC643677	SNP	Silent	13	103393999	G	A	42	49
BRCA	TCGA-B6-A0RN	THBS1	SNP	Missense_Mutation	15	39883768	A	G	16	62
BRCA	TCGA-B6-A0RN	NEIL1	SNP	Missense_Mutation	15	75647320	G	A	39	46
BRCA	TCGA-B6-A0RN	ZNF592	SNP	Missense_Mutation	15	85341673	G	T	40	60
BRCA	TCGA-B6-A0RN	CBFB	SNP	Missense_Mutation	16	67100598	C	T	28	97
BRCA	TCGA-B6-A0RN	SCN4A	SNP	Silent	17	62018350	G	A	40	41
BRCA	TCGA-B6-A0RN	LYPD4	SNP	Missense_Mutation	19	42342215	C	T	23	61
BRCA	TCGA-B6-A0RN	TMEM145	SNP	Missense_Mutation	19	42820840	C	A	24	69
BRCA	TCGA-B6-A0RN	PNPLA6	SNP	Silent	19	7605077	C	T	26	55
BRCA	TCGA-B6-A0RN	IHH	SNP	Missense_Mutation	2	219920576	C	T	27	99
BRCA	TCGA-B6-A0RN	MLPH	SNP	Silent	2	238461047	C	T	19	50
BRCA	TCGA-B6-A0RN	MYH9	INS	In_Frame_Ins	22	36697633	-	GAG	62	79
BRCA	TCGA-B6-A0RN	CCNB3	SNP	Missense_Mutation	23	50094618	A	T	3	58
BRCA	TCGA-B6-A0RN	GSPT2	SNP	Missense_Mutation	23	51488514	A	G	5	81
BRCA	TCGA-B6-A0RN	WWTR1	SNP	Silent	3	149243909	C	A	26	51
BRCA	TCGA-B6-A0RN	TBL1XR1	SNP	Missense_Mutation	3	176765098	C	A	30	100
BRCA	TCGA-B6-A0RN	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-B6-A0RN	FBXW12	SNP	Missense_Mutation	3	48416853	C	T	19	40
BRCA	TCGA-B6-A0RN	NEK1	SNP	Silent	4	170321765	G	A	38	53
BRCA	TCGA-B6-A0RN	SLC2A9	SNP	Silent	4	9836553	G	A	45	57
BRCA	TCGA-B6-A0RN	PCDHGC3	SNP	Silent	5	140857180	A	G	3	48
BRCA	TCGA-B6-A0RN	GABRG2	SNP	Missense_Mutation	5	161522529	G	A	48	100
BRCA	TCGA-B6-A0RN	BTNL9	SNP	Missense_Mutation	5	180486582	G	A	38	57
BRCA	TCGA-B6-A0RN	PCOLCE	SNP	Silent	7	100203382	C	G	23	43
BRCA	TCGA-B6-A0RN	XKR6	SNP	Silent	8	10755750	G	A	39	67
BRCA	TCGA-B6-A0RN	RP1	SNP	Silent	8	55533670	C	T	31	47
BRCA	TCGA-B6-A0RN	OR1L6	SNP	Missense_Mutation	9	125512494	G	A	39	96
BRCA	TCGA-B6-A0RN	IL33	SNP	Missense_Mutation	9	6252949	T	G	61	61
BRCA	TCGA-B6-A0RN	PTCH1	SNP	Missense_Mutation	9	98215818	C	T	19	81
BRCA	TCGA-B6-A0RO	FHAD1	SNP	Missense_Mutation	1	15708607	C	T	26	78
BRCA	TCGA-B6-A0RO	SPEN	SNP	Nonsense_Mutation	1	16257012	T	A	61	89
BRCA	TCGA-B6-A0RO	RYR2	SNP	Missense_Mutation	1	237608771	G	A	38	79
BRCA	TCGA-B6-A0RO	OR2C3	SNP	Silent	1	247695646	G	A	41	53
BRCA	TCGA-B6-A0RO	SORCS3	SNP	Silent	10	106974227	C	T	25	70
BRCA	TCGA-B6-A0RO	RPP38	SNP	Missense_Mutation	10	15145342	G	A	39	60
BRCA	TCGA-B6-A0RO	RNLS	DEL	In_Frame_Del	10	90332770	TCT	-	50	63
BRCA	TCGA-B6-A0RO	OR4A15	SNP	Missense_Mutation	11	55136222	G	T	35	51
BRCA	TCGA-B6-A0RO	OR4D10	SNP	Missense_Mutation	11	59245446	C	T	21	60
BRCA	TCGA-B6-A0RO	DDB1	SNP	Missense_Mutation	11	61093120	C	T	18	100
BRCA	TCGA-B6-A0RO	FOLR4	DEL	Frame_Shift_Del	11	94040778	CTCTTCGCCAG	-	24	54
BRCA	TCGA-B6-A0RO	EP400	SNP	Missense_Mutation	12	132498069	C	T	25	99
BRCA	TCGA-B6-A0RO	PCED1B	SNP	Missense_Mutation	12	47629963	T	A	64	68
BRCA	TCGA-B6-A0RO	RNF41	SNP	Missense_Mutation	12	56604349	G	A	44	98
BRCA	TCGA-B6-A0RO	E2F7	SNP	Missense_Mutation	12	77449886	T	C	56	65
BRCA	TCGA-B6-A0RO	DCUN1D2	SNP	Missense_Mutation	13	114138226	G	A	37	59
BRCA	TCGA-B6-A0RO	SERPINE3	SNP	Missense_Mutation	13	51922387	C	A	28	64
BRCA	TCGA-B6-A0RO	IRF9	SNP	Missense_Mutation	14	24631510	G	T	41	73
BRCA	TCGA-B6-A0RO	DCAF5	SNP	Missense_Mutation	14	69520662	T	A	51	63
BRCA	TCGA-B6-A0RO	NCOR1	SNP	Silent	17	15983302	T	A	51	39
BRCA	TCGA-B6-A0RO	DMKN	SNP	Splice_site	19	35999142	C	T	22	57
BRCA	TCGA-B6-A0RO	UHRF1	SNP	Silent	19	4954731	C	A	29	51
BRCA	TCGA-B6-A0RO	TTN	SNP	Silent	2	179585182	G	A	37	48
BRCA	TCGA-B6-A0RO	UBE2E3	SNP	Missense_Mutation	2	181925537	C	T	24	100
BRCA	TCGA-B6-A0RO	P2RY1	SNP	Missense_Mutation	3	152554206	G	A	37	82
BRCA	TCGA-B6-A0RO	PIK3CA	SNP	Missense_Mutation	3	178936074	C	G	24	98
BRCA	TCGA-B6-A0RO	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-B6-A0RO	LGI2	INS	Frame_Shift_Ins	4	25005661	-	A	17	66
BRCA	TCGA-B6-A0RO	LGI2	SNP	Silent	4	25005663	G	A	33	56
BRCA	TCGA-B6-A0RO	LSM11	SNP	Missense_Mutation	5	157178496	T	C	55	94
BRCA	TCGA-B6-A0RO	RARS	SNP	Missense_Mutation	5	167927622	G	C	35	49
BRCA	TCGA-B6-A0RO	HGC6.3	SNP	Silent	6	168377261	T	C	60	40
BRCA	TCGA-B6-A0RO	TMEM151B	SNP	Nonsense_Mutation	6	44241139	C	T	25	83
BRCA	TCGA-B6-A0RO	RHAG	SNP	Splice_site	6	49580246	A	G	2	91
BRCA	TCGA-B6-A0RO	GRHL2	SNP	Nonsense_Mutation	8	102570699	C	T	23	67
BRCA	TCGA-B6-A0RO	HSDL2	SNP	Missense_Mutation	9	115167969	G	C	46	52
BRCA	TCGA-B6-A0RO	CNTLN	SNP	Splice_Site	9	17486986	G	A	35	88
BRCA	TCGA-B6-A0RP	HDAC1	SNP	Splice_Site	1	32768220	A	G	7	79
BRCA	TCGA-B6-A0RP	HEATR8	SNP	Missense_Mutation	1	55119090	G	T	44	69
BRCA	TCGA-B6-A0RP	PRKRIR	SNP	Missense_Mutation	11	76062566	G	A	46	97
BRCA	TCGA-B6-A0RP	EPS8	SNP	Missense_Mutation	12	15822744	C	A	17	58
BRCA	TCGA-B6-A0RP	PIP4K2C	SNP	Missense_Mutation	12	57989795	A	G	2	74
BRCA	TCGA-B6-A0RP	ZFC3H1	SNP	Missense_Mutation	12	72008334	T	A	60	70
BRCA	TCGA-B6-A0RP	FREM2	SNP	Missense_Mutation	13	39435627	C	T	27	84
BRCA	TCGA-B6-A0RP	GOLGA8DP	SNP	Splice_Site	15	22709627	C	T	18	66
BRCA	TCGA-B6-A0RP	CES1	SNP	Missense_Mutation	16	55857523	C	A	25	74
BRCA	TCGA-B6-A0RP	SRCIN1	SNP	Missense_Mutation	17	36719585	G	C	40	54
BRCA	TCGA-B6-A0RP	TNNI3	SNP	Missense_Mutation	19	55666131	T	C	64	72
BRCA	TCGA-B6-A0RP	MUC16	SNP	Missense_Mutation	19	9056515	C	T	24	52
BRCA	TCGA-B6-A0RP	TTN	SNP	Missense_Mutation	2	179435537	G	A	41	100
BRCA	TCGA-B6-A0RP	CASP8	SNP	Nonsense_Mutation	2	202141634	G	T	41	53
BRCA	TCGA-B6-A0RP	PTK6	SNP	Silent	20	62162156	G	A	37	29
BRCA	TCGA-B6-A0RP	KCND1	SNP	Silent	23	48823411	C	T	17	43
BRCA	TCGA-B6-A0RP	COL6A5	SNP	Silent	3	130159662	G	A	39	43
BRCA	TCGA-B6-A0RP	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-B6-A0RP	ACOX3	SNP	Missense_Mutation	4	8401327	T	A	50	53
BRCA	TCGA-B6-A0RP	GALNTL5	SNP	Missense_Mutation	7	151716786	G	A	38	53
BRCA	TCGA-B6-A0RP	MLL3	SNP	Missense_Mutation	7	151845739	C	A	30	100
BRCA	TCGA-B6-A0RP	POLD2	SNP	Silent	7	44155818	C	T	27	31
BRCA	TCGA-B6-A0RP	NACAD	SNP	Missense_Mutation	7	45123761	C	T	26	27
BRCA	TCGA-B6-A0RP	C9orf84	SNP	Silent	9	114518627	T	C	64	57
BRCA	TCGA-B6-A0RP	DOCK8	SNP	Missense_Mutation	9	377199	G	T	38	100
BRCA	TCGA-B6-A0RQ	OBSCN	SNP	Missense_Mutation	1	228559663	C	T	22	44
BRCA	TCGA-B6-A0RQ	DEPDC1	DEL	Frame_Shift_Del	1	68954121	T	-	52	46
BRCA	TCGA-B6-A0RQ	MGMT	SNP	Silent	10	131565093	C	T	27	50
BRCA	TCGA-B6-A0RQ	TAGLN	SNP	Silent	11	117075033	C	A	23	46
BRCA	TCGA-B6-A0RQ	MYH7	SNP	Missense_Mutation	14	23899017	G	A	38	51
BRCA	TCGA-B6-A0RQ	TSC2	SNP	Missense_Mutation	16	2134569	C	G	30	56
BRCA	TCGA-B6-A0RQ	FLYWCH1	SNP	Missense_Mutation	16	2983810	T	G	59	66
BRCA	TCGA-B6-A0RQ	CDH1	SNP	Nonsense_Mutation	16	68772218	C	T	21	53
BRCA	TCGA-B6-A0RQ	PITPNM3	SNP	Silent	17	6380354	G	A	33	50
BRCA	TCGA-B6-A0RQ	KIR3DL2	SNP	Missense_Mutation	19	55363677	C	T	19	41
BRCA	TCGA-B6-A0RQ	KCNF1	SNP	Silent	2	11053551	G	A	47	54
BRCA	TCGA-B6-A0RQ	PPP1R16B	SNP	Missense_Mutation	20	37546989	G	A	40	41
BRCA	TCGA-B6-A0RQ	PIK3CA	SNP	Missense_Mutation	3	178936083	A	G	9	90
BRCA	TCGA-B6-A0RQ	CCNI2	SNP	Missense_Mutation	5	132084048	T	C	55	46
BRCA	TCGA-B6-A0RQ	GRID2IP	SNP	Silent	7	6545509	C	A	29	59
BRCA	TCGA-B6-A0RQ	GLI4	SNP	Missense_Mutation	8	144356931	A	G	10	59
BRCA	TCGA-B6-A0RQ	PNMA2	SNP	Missense_Mutation	8	26365666	C	G	32	72
BRCA	TCGA-B6-A0RS	WDR47	DEL	In_Frame_Del	1	109553945	ATCCAA	-	12	73
BRCA	TCGA-B6-A0RS	DENND2D	SNP	Missense_Mutation	1	111730905	C	T	23	65
BRCA	TCGA-B6-A0RS	OR6P1	SNP	Missense_Mutation	1	158532707	T	A	57	58
BRCA	TCGA-B6-A0RS	OR10J5	SNP	Missense_Mutation	1	159505433	C	T	27	79
BRCA	TCGA-B6-A0RS	F5	SNP	Splice_Site	1	169513747	C	T	28	96
BRCA	TCGA-B6-A0RS	KCNT2	SNP	Missense_Mutation	1	196288674	T	C	51	81
BRCA	TCGA-B6-A0RS	USH2A	SNP	Missense_Mutation	1	216052394	T	C	49	71
BRCA	TCGA-B6-A0RS	C1orf65	SNP	Missense_Mutation	1	223567522	G	A	46	42
BRCA	TCGA-B6-A0RS	ZNF678	SNP	Missense_Mutation	1	227842863	G	C	36	43
BRCA	TCGA-B6-A0RS	OR2T5	SNP	Missense_Mutation	1	248651971	C	T	30	75
BRCA	TCGA-B6-A0RS	MUTYH	SNP	Missense_Mutation	1	45797841	C	G	32	49
BRCA	TCGA-B6-A0RS	MAST2	SNP	Missense_Mutation	1	46500659	G	A	41	99
BRCA	TCGA-B6-A0RS	ENSG00000231472	SNP	Silent	10	1382469	C	T	23	61
BRCA	TCGA-B6-A0RS	JMJD1C	SNP	Missense_Mutation	10	64966616	C	A	29	98
BRCA	TCGA-B6-A0RS	PRKCQ	SNP	Missense_Mutation	10	6533736	T	A	50	54
BRCA	TCGA-B6-A0RS	IFIT5	SNP	Missense_Mutation	10	91177249	G	A	41	79
BRCA	TCGA-B6-A0RS	SPA17	SNP	Missense_Mutation	11	124564266	G	A	41	76
BRCA	TCGA-B6-A0RS	LIN7C	SNP	Silent	11	27528282	T	C	60	52
BRCA	TCGA-B6-A0RS	CKAP5	SNP	Missense_Mutation	11	46780928	C	A	30	100
BRCA	TCGA-B6-A0RS	OR5M1	SNP	Missense_Mutation	11	56380529	C	A	17	47
BRCA	TCGA-B6-A0RS	DTX4	SNP	Missense_Mutation	11	58949460	C	T	23	73
BRCA	TCGA-B6-A0RS	TYR	SNP	Silent	11	88911202	T	A	53	49
BRCA	TCGA-B6-A0RS	TMEM132C	SNP	Missense_Mutation	12	129028546	G	A	40	82
BRCA	TCGA-B6-A0RS	ENDOU	SNP	Missense_Mutation	12	48119169	C	T	26	56
BRCA	TCGA-B6-A0RS	CHD4	SNP	Missense_Mutation	12	6710131	G	C	45	69
BRCA	TCGA-B6-A0RS	USP12	DEL	Frame_Shift_Del	13	27669781	TGAA	-	55	93
BRCA	TCGA-B6-A0RS	MOK	SNP	Missense_Mutation	14	102699023	A	T	1	86
BRCA	TCGA-B6-A0RS	RNASE8	SNP	Missense_Mutation	14	21526511	G	T	48	46
BRCA	TCGA-B6-A0RS	CMA1	SNP	Silent	14	24977412	G	T	33	58
BRCA	TCGA-B6-A0RS	LRFN5	SNP	Missense_Mutation	14	42356176	T	G	51	49
BRCA	TCGA-B6-A0RS	TC2N	SNP	Missense_Mutation	14	92278777	A	T	4	69
BRCA	TCGA-B6-A0RS	LOC646396	SNP	Missense_Mutation	15	22570879	T	G	52	66
BRCA	TCGA-B6-A0RS	GATM	SNP	Missense_Mutation	15	45658597	C	A	30	93
BRCA	TCGA-B6-A0RS	C15orf21	SNP	Missense_Mutation	15	45848153	C	T	20	60
BRCA	TCGA-B6-A0RS	TICRR	SNP	Missense_Mutation	15	90167796	G	A	33	50
BRCA	TCGA-B6-A0RS	CACNA1H	SNP	Silent	16	1265590	C	A	22	52
BRCA	TCGA-B6-A0RS	SRCAP	SNP	Missense_Mutation	16	30747874	G	A	45	97
BRCA	TCGA-B6-A0RS	ZNF668	SNP	Silent	16	31072677	G	C	35	51
BRCA	TCGA-B6-A0RS	PRSS36	SNP	Silent	16	31157263	G	T	41	48
BRCA	TCGA-B6-A0RS	LOC100131347	SNP	Missense_Mutation	17	37214251	C	T	21	40
BRCA	TCGA-B6-A0RS	TP53	SNP	Missense_Mutation	17	7577121	G	A	38	65
BRCA	TCGA-B6-A0RS	ANKRD30B	SNP	Silent	18	14799123	C	T	32	43
BRCA	TCGA-B6-A0RS	METTL4	SNP	Missense_Mutation	18	2554851	G	A	48	74
BRCA	TCGA-B6-A0RS	GRP	SNP	Missense_Mutation	18	56892747	A	G	6	58
BRCA	TCGA-B6-A0RS	UPF1	SNP	Missense_Mutation	19	18965806	C	T	27	75
BRCA	TCGA-B6-A0RS	NCAN	SNP	Missense_Mutation	19	19339079	G	C	36	59
BRCA	TCGA-B6-A0RS	PPAP2C	SNP	Missense_Mutation	19	287582	G	A	43	82
BRCA	TCGA-B6-A0RS	TDRD12	SNP	Nonsense_Mutation	19	33222735	C	A	17	52
BRCA	TCGA-B6-A0RS	FFAR3	SNP	Missense_Mutation	19	35849810	C	G	18	46
BRCA	TCGA-B6-A0RS	SLC17A7	SNP	Splice_Site	19	49937858	C	T	18	94
BRCA	TCGA-B6-A0RS	SIGLEC12	SNP	Missense_Mutation	19	52001503	G	C	35	48
BRCA	TCGA-B6-A0RS	VN1R4	SNP	Silent	19	53770619	G	T	33	52
BRCA	TCGA-B6-A0RS	MUC16	SNP	Missense_Mutation	19	9013851	G	T	43	49
BRCA	TCGA-B6-A0RS	MUC16	SNP	Missense_Mutation	19	9085304	T	A	59	54
BRCA	TCGA-B6-A0RS	XIRP2	SNP	Missense_Mutation	2	167760306	G	A	38	75
BRCA	TCGA-B6-A0RS	LRP2	SNP	Missense_Mutation	2	170007474	T	G	57	93
BRCA	TCGA-B6-A0RS	ATF2	SNP	Missense_Mutation	2	175994892	G	C	33	71
BRCA	TCGA-B6-A0RS	RESP18	SNP	Missense_Mutation	2	220193896	T	C	63	54
BRCA	TCGA-B6-A0RS	INPP5D	SNP	Missense_Mutation	2	234078001	G	A	35	96
BRCA	TCGA-B6-A0RS	USP40	SNP	Missense_Mutation	2	234442402	T	C	49	42
BRCA	TCGA-B6-A0RS	C2orf73	SNP	Missense_Mutation	2	54562066	G	C	35	52
BRCA	TCGA-B6-A0RS	TET3	SNP	Missense_Mutation	2	74275023	C	T	21	69
BRCA	TCGA-B6-A0RS	SRC	SNP	Silent	20	36028528	C	T	19	46
BRCA	TCGA-B6-A0RS	SEMG1	SNP	Missense_Mutation	20	43836150	T	C	57	48
BRCA	TCGA-B6-A0RS	SLC9A8	SNP	Missense_Mutation	20	48491356	G	C	48	100
BRCA	TCGA-B6-A0RS	SLCO4A1	SNP	Missense_Mutation	20	61296348	A	T	11	77
BRCA	TCGA-B6-A0RS	SYN3	DEL	Splice_Site	22	32914022	GCACTTACTTGAGATGCGGATGGGGTG	-	34	64
BRCA	TCGA-B6-A0RS	NOL12	SNP	Missense_Mutation	22	38086719	A	T	7	45
BRCA	TCGA-B6-A0RS	MEI1	SNP	Missense_Mutation	22	42154480	G	A	38	57
BRCA	TCGA-B6-A0RS	ZMYM3	SNP	Missense_Mutation	23	70472680	C	A	28	50
BRCA	TCGA-B6-A0RS	ITGB1BP2	SNP	Missense_Mutation	23	70523323	T	A	55	62
BRCA	TCGA-B6-A0RS	MYLK	SNP	Missense_Mutation	3	123427632	C	A	20	92
BRCA	TCGA-B6-A0RS	C3orf72	SNP	Silent	3	138669384	T	A	53	37
BRCA	TCGA-B6-A0RS	TRPC1	SNP	Missense_Mutation	3	142511768	T	C	56	92
BRCA	TCGA-B6-A0RS	MME	SNP	Silent	3	154858054	T	C	49	44
BRCA	TCGA-B6-A0RS	CRYGS	SNP	Silent	3	186256500	G	T	42	58
BRCA	TCGA-B6-A0RS	NEK10	SNP	Missense_Mutation	3	27333012	G	C	34	85
BRCA	TCGA-B6-A0RS	VILL	SNP	Missense_Mutation	3	38043241	G	A	45	68
BRCA	TCGA-B6-A0RS	VIPR1	SNP	Silent	3	42555267	G	A	35	52
BRCA	TCGA-B6-A0RS	WDR6	DEL	Frame_Shift_Del	3	49050218	CAAGGTTGTCCCCATCAACACTCCAACTG	-	29	52
BRCA	TCGA-B6-A0RS	PSMD6	SNP	Missense_Mutation	3	64004628	T	G	63	94
BRCA	TCGA-B6-A0RS	KIAA1109	SNP	Missense_Mutation	4	123151131	G	A	44	98
BRCA	TCGA-B6-A0RS	IL2	SNP	Missense_Mutation	4	123374977	T	C	62	47
BRCA	TCGA-B6-A0RS	TTC29	SNP	Missense_Mutation	4	147796034	C	A	29	73
BRCA	TCGA-B6-A0RS	CSN3	SNP	Silent	4	71114726	T	C	51	44
BRCA	TCGA-B6-A0RS	SLC35A4	SNP	Missense_Mutation	5	139947124	G	C	47	95
BRCA	TCGA-B6-A0RS	PCDH1	SNP	Missense_Mutation	5	141248193	G	A	38	60
BRCA	TCGA-B6-A0RS	SLC36A3	SNP	Missense_Mutation	5	150656967	C	A	18	46
BRCA	TCGA-B6-A0RS	CMYA5	SNP	Missense_Mutation	5	79025524	G	T	36	48
BRCA	TCGA-B6-A0RS	OPRM1	SNP	Silent	6	154414482	A	T	10	51
BRCA	TCGA-B6-A0RS	TFB1M	SNP	Nonsense_Mutation	6	155606384	G	A	48	99
BRCA	TCGA-B6-A0RS	HSPA1B	SNP	Missense_Mutation	6	31795732	C	T	26	93
BRCA	TCGA-B6-A0RS	TEAD3	SNP	Missense_Mutation	6	35446080	G	C	35	70
BRCA	TCGA-B6-A0RS	DSP	SNP	Missense_Mutation	6	7585693	C	A	19	100
BRCA	TCGA-B6-A0RS	SLC26A4	SNP	Silent	7	107334868	T	C	55	58
BRCA	TCGA-B6-A0RS	ATP6V0A4	SNP	Missense_Mutation	7	138437561	G	C	45	88
BRCA	TCGA-B6-A0RS	GSTK1	SNP	Missense_Mutation	7	142961763	G	C	45	49
BRCA	TCGA-B6-A0RS	FAM115C	SNP	Missense_Mutation	7	143400212	T	A	59	69
BRCA	TCGA-B6-A0RS	GLI3	SNP	Silent	7	42063187	G	T	43	50
BRCA	TCGA-B6-A0RS	ZNF679	SNP	Missense_Mutation	7	63709524	G	C	34	46
BRCA	TCGA-B6-A0RS	WBSCR22	SNP	Missense_Mutation	7	73101334	G	T	42	89
BRCA	TCGA-B6-A0RS	ZP3	SNP	Missense_Mutation	7	76062801	G	A	45	56
BRCA	TCGA-B6-A0RS	PPP1R9A	SNP	Missense_Mutation	7	94540341	T	C	54	49
BRCA	TCGA-B6-A0RS	TRIB1	SNP	Missense_Mutation	8	126445622	A	C	5	90
BRCA	TCGA-B6-A0RS	VCPIP1	SNP	Missense_Mutation	8	67578127	A	C	12	93
BRCA	TCGA-B6-A0RS	VCPIP1	SNP	Silent	8	67579071	G	A	44	53
BRCA	TCGA-B6-A0RS	RIPK2	SNP	Silent	8	90782089	C	T	32	58
BRCA	TCGA-B6-A0RS	ACTL7B	SNP	Silent	9	111617947	G	A	40	48
BRCA	TCGA-B6-A0RS	AKNA	SNP	Missense_Mutation	9	117124808	G	C	41	57
BRCA	TCGA-B6-A0RS	KIAA2026	SNP	Missense_Mutation	9	5920883	C	T	23	68
BRCA	TCGA-B6-A0RS	PTPRD	SNP	Silent	9	8528724	C	T	21	100
BRCA	TCGA-B6-A0RT	GJA5	SNP	Missense_Mutation	1	147231066	C	G	26	87
BRCA	TCGA-B6-A0RT	WNT9A	SNP	Missense_Mutation	1	228113112	C	A	28	60
BRCA	TCGA-B6-A0RT	TARBP1	SNP	Splice_Site	1	234565071	C	A	28	86
BRCA	TCGA-B6-A0RT	TMEM57	SNP	Missense_Mutation	1	25785067	G	C	33	96
BRCA	TCGA-B6-A0RT	ANO9	SNP	Missense_Mutation	11	430133	C	G	31	72
BRCA	TCGA-B6-A0RT	GYLTL1B	SNP	Missense_Mutation	11	45945056	T	G	49	51
BRCA	TCGA-B6-A0RT	C11orf85	SNP	Missense_Mutation	11	64715283	T	C	52	31
BRCA	TCGA-B6-A0RT	COL4A2	SNP	Missense_Mutation	13	111132707	G	C	45	36
BRCA	TCGA-B6-A0RT	C13orf35	SNP	Missense_Mutation	13	113333710	C	T	27	43
BRCA	TCGA-B6-A0RT	PALB2	SNP	Silent	16	23637710	T	A	55	51
BRCA	TCGA-B6-A0RT	WWP2	SNP	Missense_Mutation	16	69965416	A	C	4	79
BRCA	TCGA-B6-A0RT	UNC45B	SNP	Silent	17	33501311	T	A	59	29
BRCA	TCGA-B6-A0RT	KCNH6	DEL	Frame_Shift_Del	17	61619707	G	-	39	98
BRCA	TCGA-B6-A0RT	NLRP13	SNP	Nonsense_Mutation	19	56423854	G	C	40	38
BRCA	TCGA-B6-A0RT	HSPA12B	SNP	Missense_Mutation	20	3721471	C	T	23	65
BRCA	TCGA-B6-A0RT	DCX	SNP	Silent	23	110644257	G	A	39	33
BRCA	TCGA-B6-A0RT	MAGEA8	SNP	Missense_Mutation	23	149013768	T	C	58	48
BRCA	TCGA-B6-A0RT	FATE1	SNP	Missense_Mutation	23	150890415	G	C	33	60
BRCA	TCGA-B6-A0RT	MXRA5	SNP	Missense_Mutation	23	3228364	C	T	24	67
BRCA	TCGA-B6-A0RT	GPR173	SNP	Silent	23	53106370	C	T	29	71
BRCA	TCGA-B6-A0RT	SCN11A	SNP	Missense_Mutation	3	38888190	C	G	29	74
BRCA	TCGA-B6-A0RT	TBL2	SNP	Missense_Mutation	7	72992858	C	G	30	65
BRCA	TCGA-B6-A0RU	CACNA1E	SNP	Missense_Mutation	1	181688931	A	C	10	66
BRCA	TCGA-B6-A0RU	MTR	SNP	Missense_Mutation	1	237023140	G	C	42	56
BRCA	TCGA-B6-A0RU	TTC4	SNP	Missense_Mutation	1	55188450	G	C	35	95
BRCA	TCGA-B6-A0RU	LOC100292054	SNP	Silent	1	798026	C	T	23	54
BRCA	TCGA-B6-A0RU	CNNM2	SNP	Missense_Mutation	10	104816543	T	C	49	76
BRCA	TCGA-B6-A0RU	TACC2	SNP	Missense_Mutation	10	123988915	C	T	29	63
BRCA	TCGA-B6-A0RU	CD3E	SNP	Missense_Mutation	11	118185202	A	G	10	70
BRCA	TCGA-B6-A0RU	PATE4	SNP	Missense_Mutation	11	125708299	A	G	7	57
BRCA	TCGA-B6-A0RU	CD248	SNP	Nonsense_Mutation	11	66082629	G	A	45	60
BRCA	TCGA-B6-A0RU	PMEL	DEL	Frame_Shift_Del	12	56349080	C	-	18	59
BRCA	TCGA-B6-A0RU	LOC729501	SNP	Silent	13	19042402	C	T	28	51
BRCA	TCGA-B6-A0RU	ARHGAP5	SNP	Missense_Mutation	14	32560757	T	A	57	69
BRCA	TCGA-B6-A0RU	ABCC6	SNP	Missense_Mutation	16	16315440	G	C	44	53
BRCA	TCGA-B6-A0RU	ACSF2	DEL	Frame_Shift_Del	17	48548486	CT	-	24	59
BRCA	TCGA-B6-A0RU	TEX14	SNP	Missense_Mutation	17	56679891	T	A	52	75
BRCA	TCGA-B6-A0RU	TP53	SNP	Nonsense_Mutation	17	7578263	G	A	39	67
BRCA	TCGA-B6-A0RU	DNAH17	SNP	Missense_Mutation	17	76490785	A	C	3	88
BRCA	TCGA-B6-A0RU	ZNF781	SNP	Nonsense_Mutation	19	38160608	G	A	48	26
BRCA	TCGA-B6-A0RU	CLASP1	DEL	In_Frame_Del	2	122106150	CGA	-	31	97
BRCA	TCGA-B6-A0RU	C20orf26	SNP	Missense_Mutation	20	20269354	C	A	20	50
BRCA	TCGA-B6-A0RU	IGSF5	DEL	Frame_Shift_Del	21	41137704	C	-	26	54
BRCA	TCGA-B6-A0RU	HIRA	SNP	Silent	22	19349295	C	T	26	46
BRCA	TCGA-B6-A0RU	MORC2	SNP	Missense_Mutation	22	31336819	T	C	57	90
BRCA	TCGA-B6-A0RU	EIF4ENIF1	SNP	Silent	22	31867874	G	C	43	49
BRCA	TCGA-B6-A0RU	CSNK1E	SNP	Missense_Mutation	22	38694855	C	T	27	99
BRCA	TCGA-B6-A0RU	TSC22D3	SNP	Silent	23	106959960	G	A	33	56
BRCA	TCGA-B6-A0RU	SAGE1	SNP	Silent	23	134986704	T	C	56	57
BRCA	TCGA-B6-A0RU	BMX	SNP	Missense_Mutation	23	15568080	C	T	31	64
BRCA	TCGA-B6-A0RU	POLQ	SNP	Missense_Mutation	3	121158894	C	A	30	72
BRCA	TCGA-B6-A0RU	HLTF	DEL	In_Frame_Del	3	148793804	GTT	-	40	58
BRCA	TCGA-B6-A0RU	CELSR3	SNP	Missense_Mutation	3	48697354	C	T	27	98
BRCA	TCGA-B6-A0RU	ROBO2	SNP	Silent	3	77612343	C	T	20	64
BRCA	TCGA-B6-A0RU	C4orf21	SNP	Missense_Mutation	4	113539671	A	T	16	40
BRCA	TCGA-B6-A0RU	PCDHA10	SNP	Silent	5	140235801	G	A	39	40
BRCA	TCGA-B6-A0RU	FABP6	SNP	Missense_Mutation	5	159656619	A	C	8	51
BRCA	TCGA-B6-A0RU	ITGA1	SNP	Missense_Mutation	5	52211349	A	G	6	90
BRCA	TCGA-B6-A0RU	UTRN	SNP	Nonsense_Mutation	6	144768443	C	T	31	78
BRCA	TCGA-B6-A0RU	LOC100290372	DNP	Missense_Mutation	6	4399612	TG	GC	63	59
BRCA	TCGA-B6-A0RU	ACTL6B	DEL	Frame_Shift_Del	7	100246265	C	-	26	96
BRCA	TCGA-B6-A0RU	MUC17	SNP	Missense_Mutation	7	100686212	C	T	30	40
BRCA	TCGA-B6-A0RU	COG5	SNP	Missense_Mutation	7	106877126	T	A	49	49
BRCA	TCGA-B6-A0RU	SLC25A13	DEL	Frame_Shift_Del	7	95751180	C	-	30	100
BRCA	TCGA-B6-A0RU	UNC5D	SNP	Missense_Mutation	8	35608151	C	A	22	74
BRCA	TCGA-B6-A0RU	CNBD1	SNP	Missense_Mutation	8	88249321	T	A	53	42
BRCA	TCGA-B6-A0RU	PALM2	SNP	Missense_Mutation	9	112705127	G	A	40	49
BRCA	TCGA-B6-A0RU	MED27	DEL	Frame_Shift_Del	9	134952894	CCAGGCTTAACAGC	-	30	99
BRCA	TCGA-B6-A0RV	HIPK1	SNP	Missense_Mutation	1	114483438	C	G	32	100
BRCA	TCGA-B6-A0RV	MIB2	SNP	Missense_Mutation	1	1562340	G	C	46	71
BRCA	TCGA-B6-A0RV	IKBKE	SNP	Silent	1	206658614	G	A	33	77
BRCA	TCGA-B6-A0RV	MRPS15	SNP	Missense_Mutation	1	36921913	G	A	39	62
BRCA	TCGA-B6-A0RV	DNALI1	DEL	Frame_Shift_Del	1	38024964	G	-	35	60
BRCA	TCGA-B6-A0RV	FRMPD2	SNP	Silent	10	49379163	G	C	45	49
BRCA	TCGA-B6-A0RV	CDK1	SNP	Silent	10	62553685	G	A	45	62
BRCA	TCGA-B6-A0RV	ATM	SNP	Splice_Site	11	108186737	G	A	33	92
BRCA	TCGA-B6-A0RV	FAR1	SNP	Silent	11	13721953	C	T	29	44
BRCA	TCGA-B6-A0RV	STK33	SNP	Silent	11	8435219	C	T	29	52
BRCA	TCGA-B6-A0RV	SWAP70	SNP	Missense_Mutation	11	9735179	C	T	29	75
BRCA	TCGA-B6-A0RV	ANAPC7	SNP	Missense_Mutation	12	110832986	C	T	29	96
BRCA	TCGA-B6-A0RV	OAS3	SNP	Silent	12	113386695	G	A	47	57
BRCA	TCGA-B6-A0RV	ARID2	SNP	Nonsense_Mutation	12	46211464	C	T	29	100
BRCA	TCGA-B6-A0RV	USP12	SNP	Splice_site	13	27664021	G	A	40	63
BRCA	TCGA-B6-A0RV	SALL2	SNP	Missense_Mutation	14	21992915	G	A	37	65
BRCA	TCGA-B6-A0RV	C14orf38	SNP	Missense_Mutation	14	60031832	T	C	54	52
BRCA	TCGA-B6-A0RV	GOLGA9P	SNP	Silent	15	23261911	G	A	33	67
BRCA	TCGA-B6-A0RV	NDNL2	SNP	Silent	15	29561355	G	A	45	51
BRCA	TCGA-B6-A0RV	USP8	SNP	Missense_Mutation	15	50791185	A	T	8	90
BRCA	TCGA-B6-A0RV	SEPT1	SNP	Missense_Mutation	16	30393617	C	G	29	99
BRCA	TCGA-B6-A0RV	ABCC12	SNP	Missense_Mutation	16	48149418	C	T	19	75
BRCA	TCGA-B6-A0RV	MAP2K4	SNP	Splice_Site	17	12043202	G	A	44	95
BRCA	TCGA-B6-A0RV	SLFN12L	SNP	Missense_Mutation	17	33807200	C	T	19	53
BRCA	TCGA-B6-A0RV	CACNA1G	SNP	Silent	17	48681624	C	T	31	51
BRCA	TCGA-B6-A0RV	ALOX12	SNP	Missense_Mutation	17	6902773	G	C	33	51
BRCA	TCGA-B6-A0RV	ELP5	SNP	Missense_Mutation	17	7158001	G	C	33	44
BRCA	TCGA-B6-A0RV	SERPINB3	SNP	Missense_Mutation	18	61323001	A	T	12	31
BRCA	TCGA-B6-A0RV	ZNF610	SNP	Missense_Mutation	19	52856956	G	A	40	65
BRCA	TCGA-B6-A0RV	ZNF835	SNP	Silent	19	57175874	G	A	41	70
BRCA	TCGA-B6-A0RV	RRM2	SNP	Silent	2	10269010	A	G	2	52
BRCA	TCGA-B6-A0RV	RGPD3	SNP	Missense_Mutation	2	107042506	G	A	44	81
BRCA	TCGA-B6-A0RV	NCKAP5	SNP	Silent	2	133541462	C	T	29	57
BRCA	TCGA-B6-A0RV	NEB	SNP	Missense_Mutation	2	152406191	G	C	45	52
BRCA	TCGA-B6-A0RV	IFIH1	SNP	Missense_Mutation	2	163128799	C	G	32	65
BRCA	TCGA-B6-A0RV	CST5	SNP	Missense_Mutation	20	23860130	C	T	30	52
BRCA	TCGA-B6-A0RV	TH1L	SNP	Missense_Mutation	20	57564035	G	A	45	96
BRCA	TCGA-B6-A0RV	KCNQ2	SNP	Missense_Mutation	20	62078142	G	C	45	66
BRCA	TCGA-B6-A0RV	ZGPAT	SNP	Silent	20	62364607	G	T	46	53
BRCA	TCGA-B6-A0RV	SYNJ1	SNP	Missense_Mutation	21	34003498	G	A	45	56
BRCA	TCGA-B6-A0RV	NHSL2	SNP	Silent	23	71358727	C	T	31	36
BRCA	TCGA-B6-A0RV	CACNA1D	SNP	Silent	3	53839094	C	T	32	65
BRCA	TCGA-B6-A0RV	JAGN1	SNP	Nonsense_Mutation	3	9934708	C	T	29	66
BRCA	TCGA-B6-A0RV	ADD1	SNP	Silent	4	2930220	G	A	45	66
BRCA	TCGA-B6-A0RV	GRIA1	SNP	Missense_Mutation	5	153065794	G	C	45	94
BRCA	TCGA-B6-A0RV	PDZD2	DEL	Splice_Site	5	32101067	TAAG	-	49	51
BRCA	TCGA-B6-A0RV	EXOC3	SNP	Silent	5	446329	G	A	33	68
BRCA	TCGA-B6-A0RV	ADCY2	SNP	Silent	5	7802447	C	G	30	52
BRCA	TCGA-B6-A0RV	GMDS	SNP	Missense_Mutation	6	2124947	C	G	29	96
BRCA	TCGA-B6-A0RV	ITPR3	SNP	Missense_Mutation	6	33647708	C	T	31	98
BRCA	TCGA-B6-A0RV	MUC12	SNP	Silent	7	100660866	G	A	45	51
BRCA	TCGA-B6-A0RV	C7orf66	SNP	Silent	7	108524578	C	G	29	46
BRCA	TCGA-B6-A0RV	VPS41	SNP	Missense_Mutation	7	38796567	C	G	32	57
BRCA	TCGA-B6-A0RV	AKAP9	SNP	Missense_Mutation	7	91712715	C	G	32	61
BRCA	TCGA-B6-A0RV	VPS13B	SNP	Missense_Mutation	8	100729551	G	C	33	71
BRCA	TCGA-B6-A0RV	INTS8	SNP	Missense_Mutation	8	95884207	T	C	52	69
BRCA	TCGA-B6-A0RV	OR1N1	SNP	Silent	9	125289222	C	T	19	11
BRCA	TCGA-B6-A0RV	ABL1	SNP	Splice_Site	9	133750254	G	C	33	84
BRCA	TCGA-B6-A0RV	FAM75C1	SNP	Missense_Mutation	9	90535186	G	C	45	59
BRCA	TCGA-B6-A0WS	CD1D	SNP	Silent	1	158150918	C	T	32	36
BRCA	TCGA-B6-A0WS	IKBKE	SNP	Silent	1	206648210	C	T	27	59
BRCA	TCGA-B6-A0WS	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-B6-A0WS	OR51V1	SNP	Missense_Mutation	11	5221911	A	G	8	48
BRCA	TCGA-B6-A0WS	WDR74	SNP	Nonsense_Mutation	11	62603453	T	A	63	54
BRCA	TCGA-B6-A0WS	KCTD10	SNP	Missense_Mutation	12	109895450	T	G	64	88
BRCA	TCGA-B6-A0WS	ATAD5	SNP	Silent	17	29220890	T	C	57	58
BRCA	TCGA-B6-A0WS	GRN	SNP	Missense_Mutation	17	42427892	C	T	19	51
BRCA	TCGA-B6-A0WS	TANC2	SNP	Splice_site	17	61489359	G	A	44	89
BRCA	TCGA-B6-A0WS	CHAF1A	SNP	Silent	19	4428843	C	T	23	35
BRCA	TCGA-B6-A0WS	PDE9A	SNP	Splice_site	21	44106372	G	A	39	75
BRCA	TCGA-B6-A0WS	ZDHHC3	SNP	Missense_Mutation	3	44970893	G	T	33	88
BRCA	TCGA-B6-A0WS	CCR2	SNP	Silent	3	46399915	C	T	25	58
BRCA	TCGA-B6-A0WS	LRBA	DEL	Frame_Shift_Del	4	151682938	C	-	30	80
BRCA	TCGA-B6-A0WS	FSTL5	SNP	Missense_Mutation	4	162577518	T	C	63	61
BRCA	TCGA-B6-A0WS	ANKH	SNP	Missense_Mutation	5	14716838	A	T	12	91
BRCA	TCGA-B6-A0WS	CAPN11	SNP	Missense_Mutation	6	44150736	G	T	38	77
BRCA	TCGA-B6-A0WS	MCM4	SNP	Silent	8	48882407	G	A	45	51
BRCA	TCGA-B6-A0WS	RABEPK	SNP	Silent	9	127994885	A	G	4	48
BRCA	TCGA-B6-A0WT	C4BPB	SNP	Silent	1	207262894	G	A	40	41
BRCA	TCGA-B6-A0WT	ITGB3BP	SNP	Missense_Mutation	1	63955841	A	T	9	76
BRCA	TCGA-B6-A0WT	PTEN	SNP	Missense_Mutation	10	89692905	G	A	37	96
BRCA	TCGA-B6-A0WT	LRP4	SNP	Silent	11	46916348	G	A	37	55
BRCA	TCGA-B6-A0WT	OR5W2	SNP	Silent	11	55681318	C	T	23	45
BRCA	TCGA-B6-A0WT	ALG10	SNP	Nonsense_Mutation	12	34177061	T	G	52	53
BRCA	TCGA-B6-A0WT	RHEBL1	SNP	Splice_Site	12	49459216	T	C	55	63
BRCA	TCGA-B6-A0WT	ESR2	SNP	Missense_Mutation	14	64694310	G	C	36	48
BRCA	TCGA-B6-A0WT	ENTPD5	SNP	Silent	14	74436746	A	G	8	45
BRCA	TCGA-B6-A0WT	SLFN14	SNP	Missense_Mutation	17	33884703	G	A	38	56
BRCA	TCGA-B6-A0WT	EXOC7	SNP	Missense_Mutation	17	74084953	G	A	39	72
BRCA	TCGA-B6-A0WT	INSL3	SNP	Missense_Mutation	19	17927802	G	A	40	42
BRCA	TCGA-B6-A0WT	SUPT5H	SNP	Missense_Mutation	19	39949655	G	A	33	95
BRCA	TCGA-B6-A0WT	GCC2	SNP	Missense_Mutation	2	109099566	C	A	29	88
BRCA	TCGA-B6-A0WT	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	TCGA-B6-A0WT	DLEC1	SNP	Silent	3	38163187	G	A	41	50
BRCA	TCGA-B6-A0WT	ITIH1	SNP	Missense_Mutation	3	52813627	G	A	39	46
BRCA	TCGA-B6-A0WT	IDUA	SNP	Missense_Mutation	4	995476	A	C	2	87
BRCA	TCGA-B6-A0WT	APC	SNP	Silent	5	112177345	A	G	7	41
BRCA	TCGA-B6-A0WT	N4BP3	SNP	Missense_Mutation	5	177548592	C	T	23	57
BRCA	TCGA-B6-A0WT	ARID1B	DEL	Frame_Shift_Del	6	157454190	T	-	54	51
BRCA	TCGA-B6-A0WT	MAPK14	SNP	Missense_Mutation	6	36063825	G	T	33	96
BRCA	TCGA-B6-A0WT	IFRD1	SNP	Missense_Mutation	7	112112289	A	G	2	62
BRCA	TCGA-B6-A0WT	NSUN5	SNP	Silent	7	72718330	A	G	3	22
BRCA	TCGA-B6-A0WT	COL14A1	SNP	Missense_Mutation	8	121282319	C	T	30	99
BRCA	TCGA-B6-A0WV	VPS13D	SNP	Silent	1	12331106	A	G	4	53
BRCA	TCGA-B6-A0WV	VSIG8	DEL	In_Frame_Del	1	159827578	TGA	-	55	41
BRCA	TCGA-B6-A0WV	OR5J2	SNP	Missense_Mutation	11	55944758	C	T	28	43
BRCA	TCGA-B6-A0WV	PIWIL4	SNP	Missense_Mutation	11	94308183	C	G	32	61
BRCA	TCGA-B6-A0WV	KLRC1	SNP	Missense_Mutation	12	10600155	A	G	8	38
BRCA	TCGA-B6-A0WV	TPCN1	SNP	Missense_Mutation	12	113728784	A	T	2	88
BRCA	TCGA-B6-A0WV	STK38L	SNP	Splice_site	12	27470270	C	T	25	99
BRCA	TCGA-B6-A0WV	PTPRB	SNP	Silent	12	70925884	T	C	56	50
BRCA	TCGA-B6-A0WV	NALCN	SNP	Missense_Mutation	13	101759935	C	G	32	100
BRCA	TCGA-B6-A0WV	SMAD9	SNP	Missense_Mutation	13	37453778	C	T	27	99
BRCA	TCGA-B6-A0WV	ERO1L	SNP	Missense_Mutation	14	53145184	C	T	20	69
BRCA	TCGA-B6-A0WV	GSPT1	INS	Splice_Site	16	11988808	-	A	61	65
BRCA	TCGA-B6-A0WV	HELZ	SNP	Silent	17	65145995	A	C	6	64
BRCA	TCGA-B6-A0WV	KCNJ16	SNP	Silent	17	68128759	G	A	33	66
BRCA	TCGA-B6-A0WV	CCDC159	INS	Frame_Shift_Ins	19	11462767	-	A	45	52
BRCA	TCGA-B6-A0WV	HADHA	SNP	Silent	2	26432729	T	C	52	61
BRCA	TCGA-B6-A0WV	VPS54	SNP	Missense_Mutation	2	64148420	T	C	64	67
BRCA	TCGA-B6-A0WV	KCNJ15	SNP	Missense_Mutation	21	39671581	G	A	40	100
BRCA	TCGA-B6-A0WV	SERPIND1	SNP	Missense_Mutation	22	21138494	C	G	22	84
BRCA	TCGA-B6-A0WV	UBE2A	DEL	Frame_Shift_Del	23	118715485	C	-	17	76
BRCA	TCGA-B6-A0WV	KCND1	DEL	In_Frame_Del	23	48826456	AGA	-	15	85
BRCA	TCGA-B6-A0WV	PHLDB2	SNP	Missense_Mutation	3	111632538	A	G	16	76
BRCA	TCGA-B6-A0WV	CCDC14	SNP	Missense_Mutation	3	123667564	G	A	42	62
BRCA	TCGA-B6-A0WV	FRG1	SNP	Missense_Mutation	4	190876224	T	G	56	81
BRCA	TCGA-B6-A0WV	HERC6	SNP	Missense_Mutation	4	89304502	G	A	41	64
BRCA	TCGA-B6-A0WV	GTPBP2	SNP	Missense_Mutation	6	43593250	C	G	20	75
BRCA	TCGA-B6-A0WV	ZNF292	DEL	Frame_Shift_Del	6	87964453	TATC	-	49	78
BRCA	TCGA-B6-A0WV	MLL3	INS	Frame_Shift_Ins	7	151882645	-	A	17	84
BRCA	TCGA-B6-A0WV	FAM78A	SNP	Missense_Mutation	9	134136463	T	G	59	88
BRCA	TCGA-B6-A0WV	FAM166A	DEL	Frame_Shift_Del	9	140139614	CGTCT	-	27	44
BRCA	TCGA-B6-A0WW	LCE1D	DEL	Frame_Shift_Del	1	152770312	CAAGTGCA	-	21	60
BRCA	TCGA-B6-A0WW	CFHR4	SNP	Silent	1	196887467	G	A	37	47
BRCA	TCGA-B6-A0WW	LBR	SNP	Silent	1	225600340	A	G	8	47
BRCA	TCGA-B6-A0WW	PTEN	DEL	Frame_Shift_Del	10	89653844	A	-	9	86
BRCA	TCGA-B6-A0WW	PTEN	SNP	Nonsense_Mutation	10	89717771	A	T	1	88
BRCA	TCGA-B6-A0WW	MUC5B	SNP	Missense_Mutation	11	1266823	G	A	39	67
BRCA	TCGA-B6-A0WW	BRSK2	SNP	Silent	11	1471018	C	T	29	65
BRCA	TCGA-B6-A0WW	OR5L2	SNP	Silent	11	55595297	G	T	47	43
BRCA	TCGA-B6-A0WW	LHX5	SNP	Missense_Mutation	12	113905144	C	T	23	98
BRCA	TCGA-B6-A0WW	HCAR2	SNP	Missense_Mutation	12	123187710	C	G	23	96
BRCA	TCGA-B6-A0WW	SLCO1B3	SNP	Splice_Site	12	21028168	G	A	35	84
BRCA	TCGA-B6-A0WW	RAPGEF3	INS	In_Frame_Ins	12	48144927	-	CGGGCT	6	42
BRCA	TCGA-B6-A0WW	TPI1	SNP	Nonsense_Mutation	12	6976710	C	T	29	70
BRCA	TCGA-B6-A0WW	CDKL1	SNP	Missense_Mutation	14	50862547	A	T	12	75
BRCA	TCGA-B6-A0WW	GOLGA8G	SNP	Missense_Mutation	15	28771127	C	G	29	69
BRCA	TCGA-B6-A0WW	GRAMD2	SNP	Missense_Mutation	15	72456002	C	T	19	49
BRCA	TCGA-B6-A0WW	HMG20A	SNP	Splice_site	15	77759649	G	A	35	76
BRCA	TCGA-B6-A0WW	HS3ST2	SNP	Silent	16	22926628	C	T	27	49
BRCA	TCGA-B6-A0WW	MRC2	SNP	Silent	17	60767630	C	T	28	51
BRCA	TCGA-B6-A0WW	PIAS4	SNP	Missense_Mutation	19	4037695	C	T	23	50
BRCA	TCGA-B6-A0WW	ASIC4	SNP	Missense_Mutation	2	220396583	A	G	10	85
BRCA	TCGA-B6-A0WW	SNRPB	INS	Splice_site	20	2451335	-	TG	8	67
BRCA	TCGA-B6-A0WW	SLC9A8	SNP	Missense_Mutation	20	48466163	T	G	63	51
BRCA	TCGA-B6-A0WW	RTEL1	SNP	Silent	20	62322279	G	C	39	39
BRCA	TCGA-B6-A0WW	ICOSLG	SNP	Missense_Mutation	21	45656914	C	T	23	47
BRCA	TCGA-B6-A0WW	PLA2G3	SNP	Missense_Mutation	22	31532969	A	G	4	71
BRCA	TCGA-B6-A0WW	CSAG1	SNP	Missense_Mutation	23	151908833	G	C	41	43
BRCA	TCGA-B6-A0WW	BGN	SNP	Missense_Mutation	23	152771478	G	A	38	56
BRCA	TCGA-B6-A0WW	KIAA1524	SNP	Silent	3	108276094	C	T	29	52
BRCA	TCGA-B6-A0WW	KIAA2018	SNP	Missense_Mutation	3	113377798	C	A	32	76
BRCA	TCGA-B6-A0WW	KALRN	SNP	Missense_Mutation	3	124017740	C	A	29	100
BRCA	TCGA-B6-A0WW	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-B6-A0WW	SMARCC1	SNP	Silent	3	47719705	A	G	8	53
BRCA	TCGA-B6-A0WW	CASP6	SNP	Nonsense_Mutation	4	110610590	G	A	39	63
BRCA	TCGA-B6-A0WW	KCNN2	SNP	Missense_Mutation	5	113698868	G	C	34	86
BRCA	TCGA-B6-A0WW	HSPA9	SNP	Missense_Mutation	5	137892185	G	C	33	87
BRCA	TCGA-B6-A0WW	LOC100127922	SNP	Missense_Mutation	5	173988914	G	C	34	78
BRCA	TCGA-B6-A0WW	BRD9	SNP	Missense_Mutation	5	878503	T	C	57	87
BRCA	TCGA-B6-A0WW	PEX7	SNP	Missense_Mutation	6	137147540	C	G	31	84
BRCA	TCGA-B6-A0WW	C6orf118	SNP	Missense_Mutation	6	165706931	G	T	46	29
BRCA	TCGA-B6-A0WW	CSMD3	SNP	Missense_Mutation	8	113237127	G	A	45	100
BRCA	TCGA-B6-A0WX	HSD3B2	SNP	Missense_Mutation	1	119964843	G	A	39	51
BRCA	TCGA-B6-A0WX	VANGL2	SNP	Silent	1	160389364	C	T	19	44
BRCA	TCGA-B6-A0WX	CNR2	SNP	Missense_Mutation	1	24201293	G	A	40	51
BRCA	TCGA-B6-A0WX	RAB42	SNP	Missense_Mutation	1	28920328	C	A	23	50
BRCA	TCGA-B6-A0WX	BMS1	SNP	Silent	10	43292558	A	G	3	50
BRCA	TCGA-B6-A0WX	PHLDB1	SNP	Missense_Mutation	11	118498282	A	G	16	89
BRCA	TCGA-B6-A0WX	NRXN2	SNP	Missense_Mutation	11	64427860	G	A	42	91
BRCA	TCGA-B6-A0WX	SRGAP1	SNP	Missense_Mutation	12	64536255	G	C	37	100
BRCA	TCGA-B6-A0WX	CACNA1H	SNP	Missense_Mutation	16	1251909	C	T	27	59
BRCA	TCGA-B6-A0WX	SF3B3	SNP	Silent	16	70595640	G	T	39	50
BRCA	TCGA-B6-A0WX	TP53	SNP	Missense_Mutation	17	7577539	G	A	39	60
BRCA	TCGA-B6-A0WX	TP53	SNP	Nonsense_Mutation	17	7579346	A	T	5	70
BRCA	TCGA-B6-A0WX	TNRC6C	SNP	Silent	17	76083023	G	A	38	52
BRCA	TCGA-B6-A0WX	FAM210A	SNP	Silent	18	13682059	T	C	59	54
BRCA	TCGA-B6-A0WX	TAF4B	SNP	Missense_Mutation	18	23847534	G	T	42	48
BRCA	TCGA-B6-A0WX	B4GALT6	SNP	Missense_Mutation	18	29210933	T	G	52	50
BRCA	TCGA-B6-A0WX	ZNF43	SNP	Missense_Mutation	19	21991152	C	G	32	61
BRCA	TCGA-B6-A0WX	NCKAP5	SNP	Nonsense_Mutation	2	133489539	G	T	44	58
BRCA	TCGA-B6-A0WX	MTX2	SNP	Missense_Mutation	2	177195335	C	G	28	71
BRCA	TCGA-B6-A0WX	ZNF512	SNP	Splice_Site	2	27825429	G	T	44	92
BRCA	TCGA-B6-A0WX	EPAS1	SNP	Silent	2	46605867	C	T	31	49
BRCA	TCGA-B6-A0WX	EPAS1	SNP	Missense_Mutation	2	46608750	T	G	63	36
BRCA	TCGA-B6-A0WX	SOCS5	SNP	Missense_Mutation	2	46985893	C	A	32	76
BRCA	TCGA-B6-A0WX	BCL11A	SNP	Silent	2	60688385	G	T	47	62
BRCA	TCGA-B6-A0WX	L3MBTL1	SNP	Silent	20	42169425	T	C	59	71
BRCA	TCGA-B6-A0WX	ZNRF3	SNP	Missense_Mutation	22	29445235	C	T	19	82
BRCA	TCGA-B6-A0WX	EFHC2	SNP	Missense_Mutation	23	44101421	T	G	58	55
BRCA	TCGA-B6-A0WX	ZC3H12B	SNP	Missense_Mutation	23	64722506	G	T	42	91
BRCA	TCGA-B6-A0WX	TEX11	SNP	Silent	23	69890251	G	A	44	59
BRCA	TCGA-B6-A0WX	CDX4	SNP	Silent	23	72667506	G	A	39	32
BRCA	TCGA-B6-A0WX	BRK1	SNP	Missense_Mutation	3	10157440	C	T	23	71
BRCA	TCGA-B6-A0WX	IL17RE	SNP	Missense_Mutation	3	9948409	G	C	40	54
BRCA	TCGA-B6-A0WX	SLC34A2	SNP	Missense_Mutation	4	25664417	A	G	10	88
BRCA	TCGA-B6-A0WX	WISP3	SNP	Missense_Mutation	6	112382347	G	A	44	64
BRCA	TCGA-B6-A0WX	ATXN1	SNP	Silent	6	16327108	C	T	25	66
BRCA	TCGA-B6-A0WX	DPCR1	SNP	Missense_Mutation	6	30918798	A	G	10	65
BRCA	TCGA-B6-A0WX	THSD7A	SNP	Missense_Mutation	7	11582644	C	G	18	99
BRCA	TCGA-B6-A0WX	NRF1	SNP	Silent	7	129350354	A	G	8	52
BRCA	TCGA-B6-A0WX	FLJ43860	SNP	Missense_Mutation	8	142446806	T	A	59	40
BRCA	TCGA-B6-A0WX	NPDC1	DEL	Frame_Shift_Del	9	139934483	G	-	35	42
BRCA	TCGA-B6-A0WY	CHD1L	INS	Frame_Shift_Ins	1	146747774	-	A	61	46
BRCA	TCGA-B6-A0WY	OR2T33	SNP	Missense_Mutation	1	248436504	G	C	34	53
BRCA	TCGA-B6-A0WY	NRAP	SNP	Nonsense_Mutation	10	115370292	G	A	38	59
BRCA	TCGA-B6-A0WY	ENDOU	SNP	Missense_Mutation	12	48110712	G	A	39	60
BRCA	TCGA-B6-A0WY	LOC643677	SNP	Missense_Mutation	13	103395336	T	G	64	48
BRCA	TCGA-B6-A0WY	UGGT2	SNP	Missense_Mutation	13	96555290	C	A	22	90
BRCA	TCGA-B6-A0WY	HERC2	SNP	Missense_Mutation	15	28389261	G	A	38	100
BRCA	TCGA-B6-A0WY	FBN1	SNP	Missense_Mutation	15	48766481	C	A	30	99
BRCA	TCGA-B6-A0WY	CCDC154	SNP	Splice_site	16	1488052	A	C	7	52
BRCA	TCGA-B6-A0WY	POLR3E	SNP	Missense_Mutation	16	22328486	C	T	19	95
BRCA	TCGA-B6-A0WY	TERF2IP	SNP	Missense_Mutation	16	75690148	G	A	48	77
BRCA	TCGA-B6-A0WY	NCOR1	SNP	Nonsense_Mutation	17	16049835	G	A	45	75
BRCA	TCGA-B6-A0WY	MLL4	SNP	Nonsense_Mutation	19	36220093	G	T	37	94
BRCA	TCGA-B6-A0WY	ALPI	SNP	Missense_Mutation	2	233322998	G	A	37	29
BRCA	TCGA-B6-A0WY	TFE3	SNP	Silent	23	48888074	T	C	57	50
BRCA	TCGA-B6-A0WY	ENSG00000230883	SNP	Missense_Mutation	3	127282638	T	G	50	39
BRCA	TCGA-B6-A0WY	PIK3CA	DEL	In_Frame_Del	3	178916940	AGAAAAGAT	-	3	59
BRCA	TCGA-B6-A0WY	HIST1H3G	SNP	Missense_Mutation	6	26271462	C	T	31	95
BRCA	TCGA-B6-A0WY	ENSG00000214605	SNP	Splice_site	7	72281250	A	G	6	58
BRCA	TCGA-B6-A0WY	KIAA2026	SNP	Missense_Mutation	9	5922013	G	A	36	74
BRCA	TCGA-B6-A0WZ	VANGL1	SNP	Missense_Mutation	1	116233968	G	T	48	75
BRCA	TCGA-B6-A0WZ	SMCP	SNP	Missense_Mutation	1	152857160	G	A	45	55
BRCA	TCGA-B6-A0WZ	HSPA6	SNP	Silent	1	161496275	C	T	32	50
BRCA	TCGA-B6-A0WZ	QSOX1	SNP	Silent	1	180147983	G	A	45	62
BRCA	TCGA-B6-A0WZ	PTPN14	SNP	Silent	1	214557335	G	A	41	47
BRCA	TCGA-B6-A0WZ	PRDM16	SNP	Missense_Mutation	1	3313062	A	G	16	90
BRCA	TCGA-B6-A0WZ	NFKB2	SNP	Splice_site	10	104156483	G	A	33	95
BRCA	TCGA-B6-A0WZ	SLC35G1	SNP	Silent	10	95660752	G	A	45	52
BRCA	TCGA-B6-A0WZ	MDK	SNP	Missense_Mutation	11	46403648	T	C	55	74
BRCA	TCGA-B6-A0WZ	OR51F2	SNP	Missense_Mutation	11	4843407	C	G	32	53
BRCA	TCGA-B6-A0WZ	STAB2	SNP	Missense_Mutation	12	104056685	G	A	37	64
BRCA	TCGA-B6-A0WZ	UBC	SNP	Missense_Mutation	12	125397950	C	G	30	93
BRCA	TCGA-B6-A0WZ	PDE3A	SNP	Silent	12	20787975	G	A	33	51
BRCA	TCGA-B6-A0WZ	A2ML1	SNP	Missense_Mutation	12	9020914	C	T	23	35
BRCA	TCGA-B6-A0WZ	TMPO	SNP	Missense_Mutation	12	98925559	G	C	33	78
BRCA	TCGA-B6-A0WZ	TSC22D1	SNP	Silent	13	45148990	G	A	45	70
BRCA	TCGA-B6-A0WZ	TSC22D1	SNP	Missense_Mutation	13	45149901	G	C	45	94
BRCA	TCGA-B6-A0WZ	PCDH9	SNP	Missense_Mutation	13	67799842	C	G	30	98
BRCA	TCGA-B6-A0WZ	ZFYVE21	SNP	Silent	14	104198964	C	T	19	47
BRCA	TCGA-B6-A0WZ	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-B6-A0WZ	PSMC6	SNP	Silent	14	53194278	C	T	29	53
BRCA	TCGA-B6-A0WZ	TTLL5	SNP	Missense_Mutation	14	76249634	C	T	32	69
BRCA	TCGA-B6-A0WZ	RASGRF1	SNP	Silent	15	79296367	G	A	43	64
BRCA	TCGA-B6-A0WZ		SNP	Silent	16	18433303	G	A	39	39
BRCA	TCGA-B6-A0WZ	CBFB	SNP	Silent	16	67070634	C	A	31	59
BRCA	TCGA-B6-A0WZ	CTCF	SNP	Missense_Mutation	16	67655464	G	C	45	100
BRCA	TCGA-B6-A0WZ	MAP2K4	SNP	Missense_Mutation	17	12011144	C	T	31	98
BRCA	TCGA-B6-A0WZ	CCL7	SNP	Missense_Mutation	17	32598251	A	C	6	69
BRCA	TCGA-B6-A0WZ	CSH2	SNP	Missense_Mutation	17	61950968	C	G	25	50
BRCA	TCGA-B6-A0WZ	FCGBP	SNP	Silent	19	40407987	G	A	35	51
BRCA	TCGA-B6-A0WZ	PRAM1	SNP	Silent	19	8564533	G	A	38	53
BRCA	TCGA-B6-A0WZ	MUC16	SNP	Silent	19	9062012	G	A	45	51
BRCA	TCGA-B6-A0WZ	NEB	SNP	Nonsense_Mutation	2	152466574	C	A	29	64
BRCA	TCGA-B6-A0WZ	TOMM34	SNP	Missense_Mutation	20	43585106	C	T	32	68
BRCA	TCGA-B6-A0WZ	RIMBP3	SNP	Missense_Mutation	22	20456978	C	T	21	50
BRCA	TCGA-B6-A0WZ	IQCB1	SNP	Missense_Mutation	3	121526220	C	A	29	56
BRCA	TCGA-B6-A0WZ	CHRD	SNP	Missense_Mutation	3	184100846	G	A	41	87
BRCA	TCGA-B6-A0WZ	BSN	SNP	Silent	3	49692929	G	A	48	30
BRCA	TCGA-B6-A0WZ	OR5K1	SNP	Missense_Mutation	3	98188682	G	A	45	47
BRCA	TCGA-B6-A0WZ	ARPC4	SNP	Silent	3	9845592	G	A	47	59
BRCA	TCGA-B6-A0WZ	MTTP	SNP	Missense_Mutation	4	100543919	G	A	45	99
BRCA	TCGA-B6-A0WZ	GPR125	SNP	Silent	4	22415369	G	C	45	68
BRCA	TCGA-B6-A0WZ	PHAX	SNP	Missense_Mutation	5	125939631	C	T	28	69
BRCA	TCGA-B6-A0WZ	ODZ2	SNP	Missense_Mutation	5	167517656	G	C	33	76
BRCA	TCGA-B6-A0WZ	ITGA1	SNP	Silent	5	52193332	G	A	33	54
BRCA	TCGA-B6-A0WZ	IQGAP2	SNP	Missense_Mutation	5	75906961	C	G	21	60
BRCA	TCGA-B6-A0WZ	ZFYVE16	SNP	Nonsense_Mutation	5	79733498	C	T	29	55
BRCA	TCGA-B6-A0WZ	GPR98	SNP	Missense_Mutation	5	90001311	T	A	52	54
BRCA	TCGA-B6-A0WZ	SHPRH	SNP	Missense_Mutation	6	146242419	C	G	32	100
BRCA	TCGA-B6-A0WZ	PLEKHG1	SNP	Silent	6	151055150	C	G	30	47
BRCA	TCGA-B6-A0WZ	CPA5	SNP	Silent	7	130003343	T	G	60	47
BRCA	TCGA-B6-A0WZ	SNX13	SNP	Missense_Mutation	7	17873801	C	G	29	98
BRCA	TCGA-B6-A0WZ	ADCYAP1R1	SNP	Silent	7	31117691	C	T	30	59
BRCA	TCGA-B6-A0WZ	ADCYAP1R1	SNP	Silent	7	31117700	C	T	29	94
BRCA	TCGA-B6-A0WZ	TNS3	SNP	Silent	7	47344561	C	T	30	78
BRCA	TCGA-B6-A0WZ	UNC5D	SNP	Missense_Mutation	8	35616880	G	A	41	100
BRCA	TCGA-B6-A0WZ	RPL7	SNP	Silent	8	74204479	G	A	45	57
BRCA	TCGA-B6-A0WZ	SURF6	SNP	Missense_Mutation	9	136199031	G	A	38	61
BRCA	TCGA-B6-A0WZ	TLN1	SNP	Missense_Mutation	9	35710572	C	T	31	100
BRCA	TCGA-B6-A0WZ	SYK	SNP	Missense_Mutation	9	93629418	G	T	44	72
BRCA	TCGA-B6-A0X0	NOTCH2	SNP	Missense_Mutation	1	120465265	C	A	17	86
BRCA	TCGA-B6-A0X0	MYPN	SNP	Silent	10	69961611	G	T	45	63
BRCA	TCGA-B6-A0X0	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-B6-A0X0	LCP1	SNP	Missense_Mutation	13	46732779	T	C	51	65
BRCA	TCGA-B6-A0X0	GOLGA8J	SNP	Missense_Mutation	15	30382467	A	G	7	63
BRCA	TCGA-B6-A0X0	MYO18A	SNP	Missense_Mutation	17	27445423	T	C	52	53
BRCA	TCGA-B6-A0X0	ITGB3	SNP	Missense_Mutation	17	45367609	A	G	4	90
BRCA	TCGA-B6-A0X0	SEH1L	SNP	Missense_Mutation	18	12971157	G	A	40	89
BRCA	TCGA-B6-A0X0	FBN3	SNP	Missense_Mutation	19	8191626	C	T	23	56
BRCA	TCGA-B6-A0X0	LRP2	SNP	Missense_Mutation	2	170135997	C	A	20	100
BRCA	TCGA-B6-A0X0	STAT4	SNP	Nonsense_Mutation	2	191922752	G	A	37	59
BRCA	TCGA-B6-A0X0	PHF20	SNP	Missense_Mutation	20	34519315	A	T	7	88
BRCA	TCGA-B6-A0X0	RUNX1	DEL	In_Frame_Del	21	36252921	AGCATTTCTCAGCTC	-	15	17
BRCA	TCGA-B6-A0X0	FRMPD4	SNP	Missense_Mutation	23	12722503	C	A	32	82
BRCA	TCGA-B6-A0X0	ASMTL	SNP	Silent	23	1522276	C	T	28	64
BRCA	TCGA-B6-A0X0	ALAS2	SNP	Silent	23	55042138	G	T	43	50
BRCA	TCGA-B6-A0X0	PCDH19	SNP	Missense_Mutation	23	99663130	G	C	41	99
BRCA	TCGA-B6-A0X0	SLCO2A1	SNP	Missense_Mutation	3	133674014	C	T	31	60
BRCA	TCGA-B6-A0X0	SH3D19	SNP	Missense_Mutation	4	152096472	G	T	41	88
BRCA	TCGA-B6-A0X0	CDH6	SNP	Silent	5	31294263	C	T	23	35
BRCA	TCGA-B6-A0X0	TNRC18	SNP	Missense_Mutation	7	5427950	G	A	39	58
BRCA	TCGA-B6-A0X0	ZNF804B	SNP	Silent	7	88964843	T	C	54	49
BRCA	TCGA-B6-A0X1	AKNAD1	SNP	Missense_Mutation	1	109394956	C	G	29	51
BRCA	TCGA-B6-A0X1	ATXN7L2	SNP	Missense_Mutation	1	110031008	A	G	3	65
BRCA	TCGA-B6-A0X1	FCRL5	SNP	Missense_Mutation	1	157516898	G	A	37	43
BRCA	TCGA-B6-A0X1	CYB5R1	SNP	Missense_Mutation	1	202931677	T	A	63	63
BRCA	TCGA-B6-A0X1	TRIM67	SNP	Missense_Mutation	1	231344862	C	G	18	66
BRCA	TCGA-B6-A0X1	OR2T5	SNP	Missense_Mutation	1	248652151	G	A	41	50
BRCA	TCGA-B6-A0X1	NSMCE4A	SNP	Splice_site	10	123727171	G	C	33	64
BRCA	TCGA-B6-A0X1	ITIH2	SNP	Silent	10	7769038	T	G	63	47
BRCA	TCGA-B6-A0X1	OR8B2	SNP	Missense_Mutation	11	124252746	C	G	32	57
BRCA	TCGA-B6-A0X1	RCN1	SNP	Missense_Mutation	11	32119986	T	A	54	71
BRCA	TCGA-B6-A0X1	OR5AK2	DEL	Frame_Shift_Del	11	56756447	A	-	7	57
BRCA	TCGA-B6-A0X1	OR5AK2	SNP	Missense_Mutation	11	56756448	G	C	34	43
BRCA	TCGA-B6-A0X1	PGM2L1	SNP	Missense_Mutation	11	74058348	G	T	46	96
BRCA	TCGA-B6-A0X1	ATP4B	SNP	Missense_Mutation	13	114303807	A	C	12	63
BRCA	TCGA-B6-A0X1	ATP12A	SNP	Missense_Mutation	13	25265155	C	T	23	94
BRCA	TCGA-B6-A0X1	AKAP11	SNP	Missense_Mutation	13	42876522	G	A	42	81
BRCA	TCGA-B6-A0X1	LOC440292	SNP	Missense_Mutation	15	78237071	C	A	27	51
BRCA	TCGA-B6-A0X1	TMC3	SNP	Silent	15	81625444	C	G	31	29
BRCA	TCGA-B6-A0X1	ABHD2	SNP	Missense_Mutation	15	89731456	C	T	22	70
BRCA	TCGA-B6-A0X1	C15orf38-AP3S2	SNP	Silent	15	90447196	G	A	48	58
BRCA	TCGA-B6-A0X1	XPO6	SNP	Nonsense_Mutation	16	28187312	G	T	36	55
BRCA	TCGA-B6-A0X1	CORO7	SNP	Silent	16	4408084	G	A	40	51
BRCA	TCGA-B6-A0X1	GPT2	SNP	Missense_Mutation	16	46934670	G	A	39	97
BRCA	TCGA-B6-A0X1	SEC14L5	SNP	Silent	16	5038173	C	T	32	74
BRCA	TCGA-B6-A0X1	POLR2C	SNP	Silent	16	57503883	C	T	31	47
BRCA	TCGA-B6-A0X1	GRIN2A	INS	Frame_Shift_Ins	16	9934882	-	A	60	75
BRCA	TCGA-B6-A0X1	BRCA1	DEL	Frame_Shift_Del	17	41276047	C	-	32	69
BRCA	TCGA-B6-A0X1	GPATCH8	SNP	Silent	17	42476445	G	A	43	51
BRCA	TCGA-B6-A0X1	SGCA	SNP	Missense_Mutation	17	48245822	T	A	54	63
BRCA	TCGA-B6-A0X1	TP53	SNP	Splice_Site	17	7576852	C	A	18	72
BRCA	TCGA-B6-A0X1	USP43	DEL	Frame_Shift_Del	17	9586235	CT	-	24	83
BRCA	TCGA-B6-A0X1	TM6SF2	SNP	Silent	19	19377377	C	A	21	56
BRCA	TCGA-B6-A0X1	TLE2	SNP	Missense_Mutation	19	3028349	C	T	31	91
BRCA	TCGA-B6-A0X1	ZNF345	SNP	Missense_Mutation	19	37368936	G	C	33	51
BRCA	TCGA-B6-A0X1	DPP4	SNP	Missense_Mutation	2	162849872	C	T	30	64
BRCA	TCGA-B6-A0X1	TTN	SNP	Missense_Mutation	2	179613845	A	G	9	47
BRCA	TCGA-B6-A0X1	ALS2CR8	SNP	Missense_Mutation	2	203826027	A	G	6	80
BRCA	TCGA-B6-A0X1	CAD	SNP	Missense_Mutation	2	27454419	G	C	45	95
BRCA	TCGA-B6-A0X1	BID	DEL	In_Frame_Del	22	18220878	TGGCCACCTTCT	-	55	48
BRCA	TCGA-B6-A0X1	OSBP2	SNP	Missense_Mutation	22	31302270	G	A	39	76
BRCA	TCGA-B6-A0X1	RBM41	SNP	Missense_Mutation	23	106331858	C	G	24	77
BRCA	TCGA-B6-A0X1	TLR7	DEL	In_Frame_Del	23	12904665	TCTGTCTTTCAATTT	-	50	56
BRCA	TCGA-B6-A0X1	PRKX	SNP	Missense_Mutation	23	3592796	A	C	2	79
BRCA	TCGA-B6-A0X1	WDR45	SNP	Missense_Mutation	23	48932526	T	C	50	87
BRCA	TCGA-B6-A0X1	GDPD2	SNP	Missense_Mutation	23	69650939	C	G	26	54
BRCA	TCGA-B6-A0X1	DMRTC1	SNP	Missense_Mutation	23	72092354	G	C	39	40
BRCA	TCGA-B6-A0X1	CCDC80	SNP	Missense_Mutation	3	112358633	C	A	21	56
BRCA	TCGA-B6-A0X1	MYLK	SNP	Missense_Mutation	3	123337588	C	T	17	90
BRCA	TCGA-B6-A0X1	COPG1	SNP	Missense_Mutation	3	128973853	G	C	38	91
BRCA	TCGA-B6-A0X1	ATP11B	SNP	Silent	3	182554293	G	A	45	35
BRCA	TCGA-B6-A0X1	EPHB3	SNP	Missense_Mutation	3	184297496	G	C	40	96
BRCA	TCGA-B6-A0X1	MASP1	SNP	Nonsense_Mutation	3	186953802	A	T	8	47
BRCA	TCGA-B6-A0X1	CACNA2D2	SNP	Missense_Mutation	3	50402899	C	T	31	90
BRCA	TCGA-B6-A0X1	MINA	SNP	Missense_Mutation	3	97677945	C	G	19	66
BRCA	TCGA-B6-A0X1	SCFD2	SNP	Silent	4	54011747	G	A	46	51
BRCA	TCGA-B6-A0X1	PCDHB12	SNP	Missense_Mutation	5	140588586	T	C	51	57
BRCA	TCGA-B6-A0X1	ARAP3	SNP	Missense_Mutation	5	141059669	G	C	43	58
BRCA	TCGA-B6-A0X1	HK3	SNP	Missense_Mutation	5	176308510	C	T	31	84
BRCA	TCGA-B6-A0X1	OSMR	SNP	Silent	5	38881757	C	G	30	45
BRCA	TCGA-B6-A0X1	DST	DEL	Frame_Shift_Del	6	56417973	GCAA	-	42	60
BRCA	TCGA-B6-A0X1	DST	DEL	In_Frame_Del	6	56417978	AGAATTCTCTCCTTC	-	15	44
BRCA	TCGA-B6-A0X1	MDN1	SNP	Missense_Mutation	6	90402230	G	A	38	86
BRCA	TCGA-B6-A0X1	RSPH10B2	SNP	Silent	7	6820477	C	T	20	58
BRCA	TCGA-B6-A0X1	CYP3A4	SNP	Missense_Mutation	7	99366036	A	C	6	71
BRCA	TCGA-B6-A0X1	UNC5D	SNP	Nonsense_Mutation	8	35608205	G	T	33	99
BRCA	TCGA-B6-A0X1	ENSG00000236191	INS	In_Frame_Ins	8	69438017	-	TCA	56	74
BRCA	TCGA-B6-A0X1	TRPA1	DEL	Frame_Shift_Del	8	72959429	AAATCTAAAAGTACCTTTGAA	-	9	49
BRCA	TCGA-B6-A0X1	SNAPC3	SNP	Missense_Mutation	9	15451369	A	G	13	89
BRCA	TCGA-B6-A0X1	FOXB2	SNP	Missense_Mutation	9	79634614	C	T	22	96
BRCA	TCGA-B6-A0X4	WDR3	SNP	Missense_Mutation	1	118491067	C	A	32	61
BRCA	TCGA-B6-A0X4	ATP8B2	SNP	Missense_Mutation	1	154303935	G	A	37	99
BRCA	TCGA-B6-A0X4	FCGR2B	SNP	Silent	1	161641360	C	T	17	44
BRCA	TCGA-B6-A0X4	KCTD3	SNP	Missense_Mutation	1	215759936	C	T	21	97
BRCA	TCGA-B6-A0X4	CYP4Z1	SNP	Splice_site	1	47533338	A	C	11	50
BRCA	TCGA-B6-A0X4	SLC22A25	SNP	Missense_Mutation	11	62931501	C	T	30	47
BRCA	TCGA-B6-A0X4	SACS	SNP	Missense_Mutation	13	23909753	C	A	32	49
BRCA	TCGA-B6-A0X4	DLK1	SNP	Missense_Mutation	14	101201147	G	A	39	78
BRCA	TCGA-B6-A0X4	KIAA0182	DEL	Frame_Shift_Del	16	85701963	G	-	35	42
BRCA	TCGA-B6-A0X4	MAP2K4	SNP	Missense_Mutation	17	11998898	C	T	31	76
BRCA	TCGA-B6-A0X4	ZNF229	SNP	Nonsense_Mutation	19	44933794	G	A	37	65
BRCA	TCGA-B6-A0X4	MUC16	SNP	Missense_Mutation	19	9005718	C	T	21	59
BRCA	TCGA-B6-A0X4	VIL1	SNP	Missense_Mutation	2	219301940	C	A	27	76
BRCA	TCGA-B6-A0X4	IFT80	SNP	Silent	3	160095282	T	A	53	45
BRCA	TCGA-B6-A0X4	AGXT2	SNP	Silent	5	35013131	C	T	31	47
BRCA	TCGA-B6-A0X4	GRIK2	SNP	Nonsense_Mutation	6	102337557	C	T	31	68
BRCA	TCGA-B6-A0X4	RNF217	SNP	Nonsense_Mutation	6	125397899	C	T	23	85
BRCA	TCGA-B6-A0X4	MLL3	SNP	Nonsense_Mutation	7	151945601	C	A	31	60
BRCA	TCGA-B6-A0X4	ATAD2	SNP	Missense_Mutation	8	124358377	A	C	9	60
BRCA	TCGA-B6-A0X5	KCND3	SNP	Silent	1	112525097	G	A	37	45
BRCA	TCGA-B6-A0X5	DENND2C	SNP	Silent	1	115168327	A	G	6	55
BRCA	TCGA-B6-A0X5	DENND4B	SNP	Silent	1	153912954	C	T	27	19
BRCA	TCGA-B6-A0X5	CENPL	SNP	Nonsense_Mutation	1	173780350	G	A	40	67
BRCA	TCGA-B6-A0X5	PADI4	SNP	Missense_Mutation	1	17668504	T	C	58	58
BRCA	TCGA-B6-A0X5	TMEM72	SNP	Missense_Mutation	10	45423377	G	A	39	54
BRCA	TCGA-B6-A0X5	SYVN1	SNP	Missense_Mutation	11	64897543	C	G	32	73
BRCA	TCGA-B6-A0X5	DNHD1	SNP	Silent	11	6584617	C	T	25	65
BRCA	TCGA-B6-A0X5	FAM186A	SNP	Missense_Mutation	12	50746116	G	A	42	54
BRCA	TCGA-B6-A0X5	CELA1	SNP	Missense_Mutation	12	51736375	C	T	31	61
BRCA	TCGA-B6-A0X5	AMHR2	SNP	Missense_Mutation	12	53819568	G	T	36	51
BRCA	TCGA-B6-A0X5	NHLRC3	SNP	Silent	13	39616426	G	A	45	58
BRCA	TCGA-B6-A0X5	NEMF	SNP	Missense_Mutation	14	50267209	C	A	29	54
BRCA	TCGA-B6-A0X5	NRXN3	SNP	Silent	14	80328256	G	A	37	42
BRCA	TCGA-B6-A0X5	STRA6	SNP	Silent	15	74494504	C	T	28	50
BRCA	TCGA-B6-A0X5	ARID3B	INS	In_Frame_Ins	15	74883640	-	CTGCTG	14	12
BRCA	TCGA-B6-A0X5	SLC13A5	INS	Frame_Shift_Ins	17	6590917	-	A	45	96
BRCA	TCGA-B6-A0X5	ALOXE3	SNP	Missense_Mutation	17	8011882	A	C	15	88
BRCA	TCGA-B6-A0X5	SMARCA4	SNP	Missense_Mutation	19	11095980	C	T	31	61
BRCA	TCGA-B6-A0X5	CBLC	DEL	In_Frame_Del	19	45284548	CAC	-	25	50
BRCA	TCGA-B6-A0X5	NAPA	SNP	Missense_Mutation	19	47994082	G	A	47	97
BRCA	TCGA-B6-A0X5	MYH14	SNP	Missense_Mutation	19	50804951	C	T	27	78
BRCA	TCGA-B6-A0X5	KHSRP	SNP	Missense_Mutation	19	6416411	A	G	11	87
BRCA	TCGA-B6-A0X5	TTN	SNP	Silent	2	179427225	A	G	16	50
BRCA	TCGA-B6-A0X5	MYT1L	SNP	Splice_Site	2	2001120	C	T	32	67
BRCA	TCGA-B6-A0X5	SPP2	SNP	Silent	2	234959682	G	T	45	59
BRCA	TCGA-B6-A0X5	MAT2A	SNP	Silent	2	85769379	A	G	1	49
BRCA	TCGA-B6-A0X5	ATP11C	SNP	Missense_Mutation	23	138845570	C	A	32	58
BRCA	TCGA-B6-A0X5	MAGEC2	SNP	Missense_Mutation	23	141291280	G	A	46	50
BRCA	TCGA-B6-A0X5	MYLK	SNP	Silent	3	123512533	G	A	37	51
BRCA	TCGA-B6-A0X5	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-B6-A0X5	SATB1	SNP	Missense_Mutation	3	18390811	C	T	31	100
BRCA	TCGA-B6-A0X5	VWA5B2	SNP	Missense_Mutation	3	183956482	G	A	37	90
BRCA	TCGA-B6-A0X5	MST1	SNP	Missense_Mutation	3	49722303	G	A	40	48
BRCA	TCGA-B6-A0X5	FAT1	SNP	Missense_Mutation	4	187539727	G	T	33	65
BRCA	TCGA-B6-A0X5	RGS12	SNP	Missense_Mutation	4	3318059	T	G	52	45
BRCA	TCGA-B6-A0X5	PCDHB5	SNP	Missense_Mutation	5	140517278	G	T	45	57
BRCA	TCGA-B6-A0X5	AP3B1	SNP	Missense_Mutation	5	77523987	G	C	36	100
BRCA	TCGA-B6-A0X5	BHMT	SNP	Missense_Mutation	5	78415130	A	C	7	90
BRCA	TCGA-B6-A0X5	SMOC2	SNP	Missense_Mutation	6	169053691	C	A	29	82
BRCA	TCGA-B6-A0X5	PTPRN2	SNP	Missense_Mutation	7	157959626	C	T	31	63
BRCA	TCGA-B6-A0X5	NSUN5	SNP	Silent	7	72717933	C	T	27	37
BRCA	TCGA-B6-A0X5	PHF20L1	INS	Frame_Shift_Ins	8	133829783	-	G	7	60
BRCA	TCGA-B6-A0X5	XPO7	SNP	Missense_Mutation	8	21844661	G	T	34	87
BRCA	TCGA-B6-A0X5	RPS20	SNP	Silent	8	56985781	C	G	19	43
BRCA	TCGA-B6-A0X5	AGPAT2	SNP	Silent	9	139571560	G	A	38	49
BRCA	TCGA-B6-A0X5	TMEM203	SNP	Silent	9	140099675	G	A	47	61
BRCA	TCGA-B6-A0X7	FCGR1C	SNP	Missense_Mutation	1	149375146	C	A	18	46
BRCA	TCGA-B6-A0X7	SH2D2A	SNP	Silent	1	156784870	G	A	40	47
BRCA	TCGA-B6-A0X7	USH2A	SNP	Missense_Mutation	1	215820992	G	A	40	33
BRCA	TCGA-B6-A0X7	FBXO18	SNP	Missense_Mutation	10	5937117	G	T	46	50
BRCA	TCGA-B6-A0X7	CEP290	SNP	Splice_site	12	88474172	C	T	26	55
BRCA	TCGA-B6-A0X7	WFIKKN1	SNP	Silent	16	683760	C	T	23	4
BRCA	TCGA-B6-A0X7	ARHGEF1	SNP	Missense_Mutation	19	42410160	C	T	26	72
BRCA	TCGA-B6-A0X7	NTSR1	SNP	Silent	20	61340826	G	A	38	50
BRCA	TCGA-B6-A0X7	KCNQ2	SNP	Missense_Mutation	20	62038263	C	T	31	98
BRCA	TCGA-B6-A0X7	USP9X	SNP	Missense_Mutation	23	41025364	G	A	37	97
BRCA	TCGA-B6-A0X7	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-B6-A0X7	CACNA2D2	SNP	Silent	3	50413608	G	A	40	54
BRCA	TCGA-B6-A0X7	CACNA1D	DEL	In_Frame_Del	3	53765129	AAC	-	9	64
BRCA	TCGA-B6-A0X7	TLR10	DEL	In_Frame_Del	4	38777170	AAC	-	13	56
BRCA	TCGA-B6-A0X7	AASDH	DEL	Frame_Shift_Del	4	57216157	C	-	30	97
BRCA	TCGA-B6-A0X7	MLLT4	SNP	Nonsense_Mutation	6	168312077	C	T	21	65
BRCA	TCGA-B6-A0X7	ABCA13	SNP	Missense_Mutation	7	48494768	G	T	36	65
BRCA	TCGA-B6-A0X7	CSMD3	SNP	Silent	8	113841931	T	G	53	75
BRCA	TCGA-B6-A1KC	VCAM1	SNP	Missense_Mutation	1	101190339	C	A	25	65
BRCA	TCGA-B6-A1KC	HRNR	SNP	Missense_Mutation	1	152188526	C	T	31	46
BRCA	TCGA-B6-A1KC	CRP	SNP	Silent	1	159683855	C	A	31	53
BRCA	TCGA-B6-A1KC	C1orf227	SNP	Missense_Mutation	1	213009307	G	T	48	60
BRCA	TCGA-B6-A1KC	MPL	SNP	Missense_Mutation	1	43817895	G	A	35	62
BRCA	TCGA-B6-A1KC	MUC5B	SNP	Silent	11	1266537	G	T	48	44
BRCA	TCGA-B6-A1KC	FLI1	SNP	Missense_Mutation	11	128680620	G	A	46	100
BRCA	TCGA-B6-A1KC	ANKRD13A	SNP	Missense_Mutation	12	110456273	G	T	36	85
BRCA	TCGA-B6-A1KC	POTEG	SNP	Silent	14	19553494	G	A	36	54
BRCA	TCGA-B6-A1KC	ARHGEF40	SNP	Missense_Mutation	14	21543885	C	T	19	44
BRCA	TCGA-B6-A1KC	CEP152	SNP	Missense_Mutation	15	49031351	C	T	28	52
BRCA	TCGA-B6-A1KC	HS3ST2	SNP	Missense_Mutation	16	22926374	A	G	5	76
BRCA	TCGA-B6-A1KC	ATP9B	SNP	Nonsense_Mutation	18	76870422	G	T	47	96
BRCA	TCGA-B6-A1KC	RALBP1	SNP	Missense_Mutation	18	9525780	A	C	3	71
BRCA	TCGA-B6-A1KC	DOPEY2	SNP	Silent	21	37665770	A	T	9	34
BRCA	TCGA-B6-A1KC	FAM70A	SNP	Missense_Mutation	23	119418990	G	T	36	78
BRCA	TCGA-B6-A1KC	MAGEC2	SNP	Missense_Mutation	23	141291556	G	C	33	56
BRCA	TCGA-B6-A1KC	F8	SNP	Missense_Mutation	23	154088864	C	A	21	82
BRCA	TCGA-B6-A1KC	PHKA1	DEL	In_Frame_Del	23	71873364	TCTTTATAT	-	54	83
BRCA	TCGA-B6-A1KC	ZXDC	SNP	Missense_Mutation	3	126160731	G	C	41	51
BRCA	TCGA-B6-A1KC	PLCH1	SNP	Silent	3	155201158	G	T	33	81
BRCA	TCGA-B6-A1KC	ARPP21	SNP	Silent	3	35770832	G	A	38	25
BRCA	TCGA-B6-A1KC	TMEM110-MUSTN1	SNP	Missense_Mutation	3	52867422	G	A	37	92
BRCA	TCGA-B6-A1KC	FEZF2	SNP	Missense_Mutation	3	62358251	C	T	28	84
BRCA	TCGA-B6-A1KC	EIF4E1B	INS	In_Frame_Ins	5	176070219	-	CCG	19	31
BRCA	TCGA-B6-A1KC	SEPP1	INS	Silent	5	42808360	-	TACA	55	54
BRCA	TCGA-B6-A1KC	ABCB8	SNP	Missense_Mutation	7	150731381	G	A	40	63
BRCA	TCGA-B6-A1KC	KIAA2026	SNP	Silent	9	5921685	A	G	15	66
BRCA	TCGA-B6-A1KC	FAM22G	SNP	Silent	9	99698810	C	A	31	51
BRCA	TCGA-B6-A1KF	FCGR1B	SNP	Missense_Mutation	1	120934573	C	T	19	64
BRCA	TCGA-B6-A1KF	ARHGEF2	SNP	Missense_Mutation	1	155921720	G	C	33	75
BRCA	TCGA-B6-A1KF	IQGAP3	SNP	Missense_Mutation	1	156507048	T	C	58	88
BRCA	TCGA-B6-A1KF	MYBPH	SNP	Missense_Mutation	1	203144796	G	A	41	44
BRCA	TCGA-B6-A1KF	NFASC	SNP	Silent	1	204942492	C	T	25	57
BRCA	TCGA-B6-A1KF	RYR2	DNP	Missense_Mutation	1	237777445	GC	TT	42	88
BRCA	TCGA-B6-A1KF	OR2T3	SNP	Silent	1	248637452	G	A	37	50
BRCA	TCGA-B6-A1KF	ZMYM6NB	SNP	Missense_Mutation	1	35449532	T	C	55	59
BRCA	TCGA-B6-A1KF	EPC1	DEL	Frame_Shift_Del	10	32581994	TT	-	56	63
BRCA	TCGA-B6-A1KF	RNF169	DEL	In_Frame_Del	11	74547205	AAG	-	1	50
BRCA	TCGA-B6-A1KF	RNF169	DEL	Frame_Shift_Del	11	74547209	AGCAC	-	15	68
BRCA	TCGA-B6-A1KF	HECTD4	SNP	Missense_Mutation	12	112701998	G	T	38	84
BRCA	TCGA-B6-A1KF	KRT77	SNP	Silent	12	53086216	G	A	38	44
BRCA	TCGA-B6-A1KF	CHAMP1	SNP	Missense_Mutation	13	115090953	C	T	19	59
BRCA	TCGA-B6-A1KF	ARHGEF40	SNP	Silent	14	21552965	C	T	32	61
BRCA	TCGA-B6-A1KF	METTL3	SNP	Missense_Mutation	14	21967278	G	C	37	99
BRCA	TCGA-B6-A1KF	ZFP36L1	INS	Frame_Shift_Ins	14	69257104	-	T	20	80
BRCA	TCGA-B6-A1KF	GLCE	SNP	Missense_Mutation	15	69560895	G	C	41	97
BRCA	TCGA-B6-A1KF	C16orf93	SNP	Missense_Mutation	16	30768802	T	C	63	63
BRCA	TCGA-B6-A1KF	CREBBP	SNP	Missense_Mutation	16	3781889	G	T	44	100
BRCA	TCGA-B6-A1KF	TMED6	SNP	Missense_Mutation	16	69385649	G	A	35	59
BRCA	TCGA-B6-A1KF	IST1	SNP	Silent	16	71961713	A	G	8	56
BRCA	TCGA-B6-A1KF	LGALS9B	SNP	Missense_Mutation	17	20356907	C	T	23	47
BRCA	TCGA-B6-A1KF	MYO18A	SNP	Silent	17	27434125	A	C	14	51
BRCA	TCGA-B6-A1KF	USP32	SNP	Missense_Mutation	17	58260771	A	G	16	90
BRCA	TCGA-B6-A1KF	MAP2K6	SNP	Silent	17	67519689	C	T	31	58
BRCA	TCGA-B6-A1KF	C19orf66	SNP	Missense_Mutation	19	10200684	C	T	27	42
BRCA	TCGA-B6-A1KF	TECR	SNP	Missense_Mutation	19	14674030	G	A	38	91
BRCA	TCGA-B6-A1KF	ZNF223	SNP	Missense_Mutation	19	44571134	T	A	58	49
BRCA	TCGA-B6-A1KF	ZNF749	SNP	Silent	19	57955449	T	G	54	48
BRCA	TCGA-B6-A1KF	FBN3	SNP	Silent	19	8155008	G	A	38	43
BRCA	TCGA-B6-A1KF	CCDC93	SNP	Missense_Mutation	2	118753931	A	C	6	90
BRCA	TCGA-B6-A1KF	BAZ2B	SNP	Missense_Mutation	2	160335202	G	A	45	85
BRCA	TCGA-B6-A1KF	CHRNG	SNP	Missense_Mutation	2	233405397	G	A	39	50
BRCA	TCGA-B6-A1KF	C20orf26	SNP	Missense_Mutation	20	20051511	C	T	24	83
BRCA	TCGA-B6-A1KF	SEMG2	SNP	Missense_Mutation	20	43850896	G	A	40	42
BRCA	TCGA-B6-A1KF	SLC12A5	SNP	Silent	20	44664069	G	T	48	52
BRCA	TCGA-B6-A1KF	C20orf43	SNP	Missense_Mutation	20	55092227	A	G	9	76
BRCA	TCGA-B6-A1KF	PCK1	SNP	Missense_Mutation	20	56137929	C	T	32	96
BRCA	TCGA-B6-A1KF	UTP14A	SNP	Missense_Mutation	23	129058938	G	A	33	56
BRCA	TCGA-B6-A1KF	ABI3BP	SNP	Missense_Mutation	3	100515255	G	A	35	65
BRCA	TCGA-B6-A1KF	XRN1	SNP	Silent	3	142031572	G	T	33	53
BRCA	TCGA-B6-A1KF	KIAA0922	SNP	Missense_Mutation	4	154478218	G	C	41	86
BRCA	TCGA-B6-A1KF	UGT3A2	SNP	Missense_Mutation	5	36035966	G	A	40	56
BRCA	TCGA-B6-A1KF	LIFR	SNP	Missense_Mutation	5	38481792	G	T	48	87
BRCA	TCGA-B6-A1KF	ARRDC3	INS	Frame_Shift_Ins	5	90670942	-	CA	18	100
BRCA	TCGA-B6-A1KF	SPAM1	SNP	Silent	7	123599783	T	A	55	44
BRCA	TCGA-B6-A1KF	OR2A42	SNP	Missense_Mutation	7	143929735	C	T	19	54
BRCA	TCGA-B6-A1KF	ARHGEF5	SNP	Nonsense_Mutation	7	144062632	C	G	29	58
BRCA	TCGA-B6-A1KF	NME8	SNP	Silent	7	37916509	G	A	36	51
BRCA	TCGA-B6-A1KF	HIP1	SNP	Missense_Mutation	7	75197549	C	T	29	96
BRCA	TCGA-B6-A1KF	GPC2	SNP	Silent	7	99769764	C	T	32	57
BRCA	TCGA-B6-A1KF	IKBKB	SNP	Nonsense_Mutation	8	42174288	G	T	45	100
BRCA	TCGA-B6-A1KF	WWP1	SNP	Splice_site	8	87460602	A	G	11	67
BRCA	TCGA-B6-A1KF	DNM1	SNP	Missense_Mutation	9	131010934	G	C	41	84
BRCA	TCGA-B6-A1KF	RANBP6	SNP	Missense_Mutation	9	6012355	C	G	30	63
BRCA	TCGA-B6-A1KF	PGM5	SNP	Missense_Mutation	9	71006498	C	T	21	96
BRCA	TCGA-B6-A1KI	ANKRD35	SNP	Silent	1	145556634	A	G	4	51
BRCA	TCGA-B6-A1KI	WASH7P	SNP	Silent	1	17365	C	G	32	54
BRCA	TCGA-B6-A1KI	OBSCN	SNP	Silent	1	228497229	G	A	40	21
BRCA	TCGA-B6-A1KI	RET	SNP	Silent	10	43609956	G	A	39	44
BRCA	TCGA-B6-A1KI	MUC5B	SNP	Silent	11	1268064	C	T	21	49
BRCA	TCGA-B6-A1KI	OR8K3	SNP	Missense_Mutation	11	56085814	A	T	9	76
BRCA	TCGA-B6-A1KI	KIF21A	SNP	Missense_Mutation	12	39711947	C	T	23	87
BRCA	TCGA-B6-A1KI	ATP11A	SNP	Silent	13	113512469	C	G	25	47
BRCA	TCGA-B6-A1KI	GPX2	SNP	Silent	14	65406536	C	G	32	87
BRCA	TCGA-B6-A1KI	TLE3	SNP	Silent	15	70347454	G	A	34	52
BRCA	TCGA-B6-A1KI	C17orf104	SNP	Missense_Mutation	17	42744021	C	A	29	68
BRCA	TCGA-B6-A1KI	ABCA5	SNP	Missense_Mutation	17	67246096	G	A	35	84
BRCA	TCGA-B6-A1KI	ABHD1	SNP	Missense_Mutation	2	27351965	T	C	53	64
BRCA	TCGA-B6-A1KI	PIK3CA	SNP	Missense_Mutation	3	178936095	A	C	7	90
BRCA	TCGA-B6-A1KI	XXYLT1	SNP	Missense_Mutation	3	194877239	A	G	4	88
BRCA	TCGA-B6-A1KI	ADAMTS3	SNP	Silent	4	73161418	C	T	31	43
BRCA	TCGA-B6-A1KI	CLPTM1L	SNP	Silent	5	1334410	C	T	19	31
BRCA	TCGA-B6-A1KI	CATSPER3	SNP	Missense_Mutation	5	134347257	C	G	28	57
BRCA	TCGA-B6-A1KI	PCDHGA2	SNP	Silent	5	140720953	G	A	40	48
BRCA	TCGA-B6-A1KI	ESR1	DEL	In_Frame_Del	6	152382240	TATTAT	-	53	51
BRCA	TCGA-B6-A1KI	MAGI2	SNP	Missense_Mutation	7	77789414	G	A	39	97
BRCA	TCGA-B6-A1KI	KLF4	SNP	Missense_Mutation	9	110249348	T	G	64	78
BRCA	TCGA-B6-A1KI	CNTFR	INS	Frame_Shift_Ins	9	34552194	-	G	7	49
BRCA	TCGA-B6-A1KN	SASS6	SNP	Missense_Mutation	1	100573002	C	A	24	53
BRCA	TCGA-B6-A1KN	DENND2D	SNP	Missense_Mutation	1	111739850	G	A	43	94
BRCA	TCGA-B6-A1KN	SYT11	SNP	Silent	1	155851077	C	A	32	84
BRCA	TCGA-B6-A1KN	RIT1	SNP	Silent	1	155874570	A	T	14	46
BRCA	TCGA-B6-A1KN	SUCO	SNP	Nonsense_Mutation	1	172526472	C	T	25	81
BRCA	TCGA-B6-A1KN	HTR6	SNP	Silent	1	19992948	G	A	39	55
BRCA	TCGA-B6-A1KN	NUAK2	SNP	Missense_Mutation	1	205275345	C	A	17	62
BRCA	TCGA-B6-A1KN	BAI2	DEL	In_Frame_Del	1	32202284	AAG	-	1	89
BRCA	TCGA-B6-A1KN	CUBN	SNP	Silent	10	16916414	C	G	17	47
BRCA	TCGA-B6-A1KN	AMPD3	SNP	Missense_Mutation	11	10500146	C	T	22	51
BRCA	TCGA-B6-A1KN	GALNTL4	SNP	Silent	11	11394113	C	T	21	62
BRCA	TCGA-B6-A1KN	KDM2A	SNP	Missense_Mutation	11	66999078	G	A	41	80
BRCA	TCGA-B6-A1KN	C11orf24	SNP	Missense_Mutation	11	68030078	C	T	26	53
BRCA	TCGA-B6-A1KN	SCYL2	SNP	Missense_Mutation	12	100732846	A	T	16	54
BRCA	TCGA-B6-A1KN	TAS2R42	SNP	Missense_Mutation	12	11338943	G	T	34	43
BRCA	TCGA-B6-A1KN	BCAT1	SNP	Missense_Mutation	12	24989509	G	A	47	81
BRCA	TCGA-B6-A1KN	HSPH1	SNP	Missense_Mutation	13	31714438	C	A	29	99
BRCA	TCGA-B6-A1KN	TBC1D4	SNP	Missense_Mutation	13	75880582	T	G	62	55
BRCA	TCGA-B6-A1KN	UBAC2	SNP	Missense_Mutation	13	99890758	T	C	55	74
BRCA	TCGA-B6-A1KN	MKRN3	SNP	Missense_Mutation	15	23811029	G	A	40	49
BRCA	TCGA-B6-A1KN	AQP8	SNP	Missense_Mutation	16	25228619	G	T	48	83
BRCA	TCGA-B6-A1KN	PRSS53	SNP	Missense_Mutation	16	31097783	G	A	38	85
BRCA	TCGA-B6-A1KN	C17orf75	SNP	Missense_Mutation	17	30665245	G	A	33	98
BRCA	TCGA-B6-A1KN	KRTAP4-9	SNP	Missense_Mutation	17	39261786	G	A	46	66
BRCA	TCGA-B6-A1KN	TP53	SNP	Missense_Mutation	17	7577144	A	G	7	87
BRCA	TCGA-B6-A1KN	ZNF607	SNP	Silent	19	38189031	A	G	16	70
BRCA	TCGA-B6-A1KN	ZNF562	SNP	Missense_Mutation	19	9770066	T	C	64	48
BRCA	TCGA-B6-A1KN	OLFM2	SNP	Missense_Mutation	19	9967532	C	T	27	92
BRCA	TCGA-B6-A1KN	KIAA1715	SNP	Missense_Mutation	2	176812363	T	A	60	57
BRCA	TCGA-B6-A1KN	STAT4	DEL	Splice_site	2	191895699	GC	-	46	86
BRCA	TCGA-B6-A1KN	MTERFD2	SNP	Missense_Mutation	2	242038987	A	C	14	59
BRCA	TCGA-B6-A1KN	NOTO	SNP	Missense_Mutation	2	73438003	C	A	25	60
BRCA	TCGA-B6-A1KN	C2orf51	SNP	Silent	2	88826006	G	A	38	32
BRCA	TCGA-B6-A1KN	B3GALT5	SNP	Missense_Mutation	21	41032794	C	T	25	50
BRCA	TCGA-B6-A1KN	CSF2RB	SNP	Missense_Mutation	22	37326821	G	A	40	54
BRCA	TCGA-B6-A1KN	NOL12	SNP	Splice_site	22	38083918	G	A	41	83
BRCA	TCGA-B6-A1KN	MLC1	SNP	Splice_Site	22	50512644	C	T	19	90
BRCA	TCGA-B6-A1KN	BCORL1	SNP	Missense_Mutation	23	129155089	C	A	21	80
BRCA	TCGA-B6-A1KN	L1CAM	SNP	Missense_Mutation	23	153130895	G	A	47	52
BRCA	TCGA-B6-A1KN	PPEF1	SNP	Silent	23	18824526	G	A	45	57
BRCA	TCGA-B6-A1KN	SHROOM4	SNP	Missense_Mutation	23	50377358	C	T	30	74
BRCA	TCGA-B6-A1KN	ARHGEF9	SNP	Silent	23	62917053	G	A	48	57
BRCA	TCGA-B6-A1KN	ZBTB11	SNP	Missense_Mutation	3	101375072	G	C	33	54
BRCA	TCGA-B6-A1KN	BRPF1	SNP	Missense_Mutation	3	9783057	T	G	51	45
BRCA	TCGA-B6-A1KN	MMAA	SNP	Missense_Mutation	4	146576496	T	G	62	51
BRCA	TCGA-B6-A1KN	CYP4V2	SNP	Missense_Mutation	4	187130348	C	T	27	53
BRCA	TCGA-B6-A1KN	TBC1D1	SNP	Silent	4	38029467	T	C	50	50
BRCA	TCGA-B6-A1KN	ANKHD1	DEL	Frame_Shift_Del	5	139909280	TGGGTAACTCAGTGCT	-	55	86
BRCA	TCGA-B6-A1KN	TMCO6	SNP	Missense_Mutation	5	140022616	A	C	8	57
BRCA	TCGA-B6-A1KN	ZNF366	SNP	Missense_Mutation	5	71739680	G	T	33	88
BRCA	TCGA-B6-A1KN	NT5E	SNP	Missense_Mutation	6	86181085	G	T	33	59
BRCA	TCGA-B6-A1KN	MUC17	SNP	Missense_Mutation	7	100679631	G	A	36	43
BRCA	TCGA-B6-A1KN	PPP1R3A	SNP	Nonsense_Mutation	7	113558745	C	A	32	99
BRCA	TCGA-B6-A1KN	PRKDC	INS	Frame_Shift_Ins	8	48697854	-	T	48	74
BRCA	TCGA-B6-A1KN	VCPIP1	SNP	Missense_Mutation	8	67578547	T	G	50	94
BRCA	TCGA-BH-A0AU	FAM212B	SNP	Missense_Mutation	1	112270149	C	A	17	60
BRCA	TCGA-BH-A0AU	ARNT	SNP	Nonsense_Mutation	1	150807078	C	A	30	100
BRCA	TCGA-BH-A0AU	TMEM39B	SNP	Silent	1	32568070	C	T	30	37
BRCA	TCGA-BH-A0AU	ARCN1	SNP	Silent	11	118468587	A	G	3	55
BRCA	TCGA-BH-A0AU	NUMA1	SNP	Missense_Mutation	11	71724980	C	T	23	54
BRCA	TCGA-BH-A0AU	RFX4	SNP	Missense_Mutation	12	107141268	G	T	47	84
BRCA	TCGA-BH-A0AU	TIMELESS	SNP	Silent	12	56817648	G	A	34	50
BRCA	TCGA-BH-A0AU	PCDH9	DEL	Frame_Shift_Del	13	67802338	A	-	9	68
BRCA	TCGA-BH-A0AU	ZNF207	SNP	Nonsense_Mutation	17	30678929	C	T	25	99
BRCA	TCGA-BH-A0AU	ACE	SNP	Silent	17	61570872	C	T	29	70
BRCA	TCGA-BH-A0AU	ITGB4	SNP	Missense_Mutation	17	73745040	G	A	38	68
BRCA	TCGA-BH-A0AU	FASN	SNP	Missense_Mutation	17	80040450	C	T	31	97
BRCA	TCGA-BH-A0AU	CNN2	SNP	Missense_Mutation	19	1032430	C	G	29	56
BRCA	TCGA-BH-A0AU	CNTD2	SNP	Missense_Mutation	19	40729202	T	A	57	26
BRCA	TCGA-BH-A0AU	PTPRH	SNP	Silent	19	55707939	G	A	40	34
BRCA	TCGA-BH-A0AU	C19orf45	DEL	Frame_Shift_Del	19	7573145	ACAAT	-	6	45
BRCA	TCGA-BH-A0AU	NMS	SNP	Nonsense_Mutation	2	101097609	C	T	19	47
BRCA	TCGA-BH-A0AU	MAP2	SNP	Missense_Mutation	2	210557446	G	T	34	39
BRCA	TCGA-BH-A0AU	MICAL3	SNP	Missense_Mutation	22	18300541	G	A	42	83
BRCA	TCGA-BH-A0AU	FRMPD4	SNP	Missense_Mutation	23	12736089	A	T	2	51
BRCA	TCGA-BH-A0AU	IFT122	SNP	Silent	3	129207207	G	A	38	42
BRCA	TCGA-BH-A0AU	HDAC11	SNP	Missense_Mutation	3	13545616	G	T	34	70
BRCA	TCGA-BH-A0AU	GALNT7	INS	Frame_Shift_Ins	4	174219320	-	ATACCCC	61	70
BRCA	TCGA-BH-A0AU	CCNG2	SNP	Silent	4	78082828	C	G	29	55
BRCA	TCGA-BH-A0AU	PCDHA4	SNP	Silent	5	140188734	C	T	19	49
BRCA	TCGA-BH-A0AU	HLA-G	DEL	Frame_Shift_Del	6	29796435	C	-	18	51
BRCA	TCGA-BH-A0AU	TSC1	SNP	Missense_Mutation	9	135798857	A	T	11	87
BRCA	TCGA-BH-A0AV	POGZ	SNP	Missense_Mutation	1	151403234	G	C	45	82
BRCA	TCGA-BH-A0AV	EPHA2	SNP	Missense_Mutation	1	16475071	C	T	26	94
BRCA	TCGA-BH-A0AV	PPFIA4	SNP	Splice_site	1	203040821	C	T	25	98
BRCA	TCGA-BH-A0AV	ZNF670	SNP	Missense_Mutation	1	247201519	C	G	24	50
BRCA	TCGA-BH-A0AV	HIVEP3	SNP	Silent	1	41978910	G	C	43	77
BRCA	TCGA-BH-A0AV	LRRIQ3	SNP	Missense_Mutation	1	74507371	A	C	8	63
BRCA	TCGA-BH-A0AV	CDH23	SNP	Missense_Mutation	10	73553149	C	T	31	96
BRCA	TCGA-BH-A0AV	DNHD1	SNP	Silent	11	6592506	C	T	18	56
BRCA	TCGA-BH-A0AV	C12orf36	SNP	Missense_Mutation	12	13526168	T	G	52	39
BRCA	TCGA-BH-A0AV	SLCO1B3	SNP	Silent	12	21036408	A	G	7	46
BRCA	TCGA-BH-A0AV	PTPRR	SNP	Missense_Mutation	12	71054738	G	T	35	97
BRCA	TCGA-BH-A0AV	A2ML1	SNP	Silent	12	8998791	C	T	32	58
BRCA	TCGA-BH-A0AV	PZP	SNP	Silent	12	9312950	C	T	27	38
BRCA	TCGA-BH-A0AV	N4BP2L2	SNP	Missense_Mutation	13	33109915	G	A	48	87
BRCA	TCGA-BH-A0AV	ALG11	SNP	Missense_Mutation	13	52598472	C	G	29	71
BRCA	TCGA-BH-A0AV	NEK5	SNP	Missense_Mutation	13	52701581	C	A	18	80
BRCA	TCGA-BH-A0AV	MGA	SNP	Missense_Mutation	15	42058547	A	G	16	53
BRCA	TCGA-BH-A0AV	WDR76	SNP	Missense_Mutation	15	44134845	A	C	11	52
BRCA	TCGA-BH-A0AV	SPG11	SNP	Splice_Site	15	44905735	C	A	32	84
BRCA	TCGA-BH-A0AV	FAH	SNP	Silent	15	80454634	C	G	31	23
BRCA	TCGA-BH-A0AV	TRAF7	SNP	Missense_Mutation	16	2222552	C	A	26	73
BRCA	TCGA-BH-A0AV	ATXN2L	SNP	Silent	16	28845927	G	C	38	46
BRCA	TCGA-BH-A0AV	NLRC5	INS	Frame_Shift_Ins	16	57092939	-	TGTA	26	57
BRCA	TCGA-BH-A0AV	NLRC5	SNP	Missense_Mutation	16	57092943	C	G	30	57
BRCA	TCGA-BH-A0AV	CCDC103	SNP	Missense_Mutation	17	42978466	T	A	60	54
BRCA	TCGA-BH-A0AV	EPN3	INS	Frame_Shift_Ins	17	48619449	-	GC	46	69
BRCA	TCGA-BH-A0AV	TP53	SNP	Missense_Mutation	17	7577538	C	T	23	80
BRCA	TCGA-BH-A0AV	PCYT2	SNP	Missense_Mutation	17	79864664	G	C	33	62
BRCA	TCGA-BH-A0AV	ABCA7	SNP	Missense_Mutation	19	1063775	G	T	42	90
BRCA	TCGA-BH-A0AV	PNMAL1	SNP	Nonsense_Mutation	19	46973872	G	A	45	58
BRCA	TCGA-BH-A0AV	SIGLEC16	SNP	Silent	19	50474928	T	G	54	46
BRCA	TCGA-BH-A0AV	LRRC4B	SNP	Missense_Mutation	19	51021954	C	A	27	91
BRCA	TCGA-BH-A0AV	ZNF578	SNP	Missense_Mutation	19	53014843	A	C	4	48
BRCA	TCGA-BH-A0AV	DPRX	DEL	Frame_Shift_Del	19	54139920	C	-	20	49
BRCA	TCGA-BH-A0AV	DPRX	DEL	Frame_Shift_Del	19	54139922	CCACAACCGCCAATACCAGAGG	-	30	52
BRCA	TCGA-BH-A0AV	EPS8L1	SNP	Missense_Mutation	19	55594928	G	C	39	46
BRCA	TCGA-BH-A0AV	ZNF8	SNP	Missense_Mutation	19	58790466	G	A	35	55
BRCA	TCGA-BH-A0AV	ZEB2	SNP	Missense_Mutation	2	145157550	C	G	20	81
BRCA	TCGA-BH-A0AV	SCN3A	SNP	Silent	2	166020192	G	T	46	77
BRCA	TCGA-BH-A0AV	KLHL23	SNP	Missense_Mutation	2	170592167	C	G	31	86
BRCA	TCGA-BH-A0AV	MTA3	SNP	Missense_Mutation	2	42931438	G	A	33	100
BRCA	TCGA-BH-A0AV	COL20A1	SNP	Splice_Site	20	61942976	G	A	35	65
BRCA	TCGA-BH-A0AV	PRIC285	SNP	Silent	20	62197238	C	T	28	49
BRCA	TCGA-BH-A0AV	CHEK2	SNP	Missense_Mutation	22	29115457	A	C	12	57
BRCA	TCGA-BH-A0AV	DMC1	DEL	In_Frame_Del	22	38962600	GTTTGTTCGCTG	-	36	58
BRCA	TCGA-BH-A0AV	KLHL13	SNP	Missense_Mutation	23	117033310	G	C	35	97
BRCA	TCGA-BH-A0AV	CBLB	SNP	Silent	3	105421211	A	T	11	55
BRCA	TCGA-BH-A0AV	RHO	DEL	Frame_Shift_Del	3	129251508	ACCCACCAGGGCTCCA	-	6	70
BRCA	TCGA-BH-A0AV	MME	SNP	Silent	3	154889935	C	T	27	29
BRCA	TCGA-BH-A0AV	TMPPE	SNP	Silent	3	33135493	G	A	46	30
BRCA	TCGA-BH-A0AV	GNAI2	SNP	Silent	3	50273779	C	A	23	54
BRCA	TCGA-BH-A0AV	APBB2	SNP	Missense_Mutation	4	41015638	G	A	41	100
BRCA	TCGA-BH-A0AV	HSD17B4	SNP	Missense_Mutation	5	118862855	G	A	35	93
BRCA	TCGA-BH-A0AV	SEMA5A	SNP	Missense_Mutation	5	9202316	A	C	1	88
BRCA	TCGA-BH-A0AV	KIF25	SNP	Silent	6	168439275	C	G	32	40
BRCA	TCGA-BH-A0AV	SLC17A3	SNP	Missense_Mutation	6	25862627	T	C	51	66
BRCA	TCGA-BH-A0AV	DHX16	SNP	Silent	6	30623036	A	G	8	51
BRCA	TCGA-BH-A0AV	PTCRA	SNP	Missense_Mutation	6	42891993	C	T	22	46
BRCA	TCGA-BH-A0AV	CUL9	SNP	Missense_Mutation	6	43191035	C	T	30	85
BRCA	TCGA-BH-A0AV	TCTE1	SNP	Missense_Mutation	6	44253808	A	T	14	90
BRCA	TCGA-BH-A0AV	FHL5	SNP	Missense_Mutation	6	97051596	T	C	57	79
BRCA	TCGA-BH-A0AV	CADPS2	SNP	Missense_Mutation	7	122153323	G	A	40	72
BRCA	TCGA-BH-A0AV	TMEM106B	SNP	Missense_Mutation	7	12258129	G	C	33	96
BRCA	TCGA-BH-A0AV	INTS1	SNP	Silent	7	1525118	C	T	20	46
BRCA	TCGA-BH-A0AV	DNAH11	SNP	Missense_Mutation	7	21639693	C	G	21	58
BRCA	TCGA-BH-A0AV	LYNX1	SNP	Silent	8	143856615	G	A	41	33
BRCA	TCGA-BH-A0AV	PIWIL2	SNP	Missense_Mutation	8	22172647	G	A	41	70
BRCA	TCGA-BH-A0AV	DENND1A	SNP	Silent	9	126520095	T	A	55	53
BRCA	TCGA-BH-A0AV	APTX	SNP	Missense_Mutation	9	32987552	G	C	35	67
BRCA	TCGA-BH-A0AV	ARHGEF39	SNP	Silent	9	35664117	G	A	34	67
BRCA	TCGA-BH-A0AV	VPS13A	SNP	Missense_Mutation	9	79955388	G	C	45	73
BRCA	TCGA-BH-A0AV	FAM75C1	SNP	Missense_Mutation	9	90536977	G	T	42	55
BRCA	TCGA-BH-A0AW	TCHH	SNP	Missense_Mutation	1	152082392	T	C	54	49
BRCA	TCGA-BH-A0AW	S100A6	SNP	Missense_Mutation	1	153507273	C	T	30	62
BRCA	TCGA-BH-A0AW	RXFP4	SNP	Missense_Mutation	1	155912498	C	A	22	62
BRCA	TCGA-BH-A0AW	OR6K2	SNP	Missense_Mutation	1	158670357	A	G	2	63
BRCA	TCGA-BH-A0AW	IFI16	SNP	Silent	1	159021525	G	A	33	48
BRCA	TCGA-BH-A0AW	DDR2	SNP	Missense_Mutation	1	162724596	G	T	36	99
BRCA	TCGA-BH-A0AW	PAPPA2	SNP	Missense_Mutation	1	176811528	G	A	46	81
BRCA	TCGA-BH-A0AW	CEP350	SNP	Missense_Mutation	1	179989393	G	C	45	54
BRCA	TCGA-BH-A0AW	CACNA1E	SNP	Missense_Mutation	1	181726188	G	T	48	100
BRCA	TCGA-BH-A0AW	NFASC	SNP	Silent	1	204951129	C	T	31	48
BRCA	TCGA-BH-A0AW	C1orf65	SNP	Missense_Mutation	1	223568234	G	A	37	70
BRCA	TCGA-BH-A0AW	EXO1	SNP	Missense_Mutation	1	242016718	G	A	41	97
BRCA	TCGA-BH-A0AW	OR14C36	SNP	Silent	1	248512448	C	T	32	59
BRCA	TCGA-BH-A0AW	TMEM50A	SNP	Missense_Mutation	1	25667009	C	T	29	74
BRCA	TCGA-BH-A0AW	CCDC28B	SNP	Missense_Mutation	1	32669526	G	T	39	75
BRCA	TCGA-BH-A0AW	ERMAP	SNP	Missense_Mutation	1	43296636	A	G	13	55
BRCA	TCGA-BH-A0AW	CPT2	SNP	Missense_Mutation	1	53676541	C	T	30	79
BRCA	TCGA-BH-A0AW	CELF2	SNP	Missense_Mutation	10	11299809	T	C	54	92
BRCA	TCGA-BH-A0AW	EIF3A	SNP	Missense_Mutation	10	120797885	G	A	45	68
BRCA	TCGA-BH-A0AW	FANK1	SNP	Missense_Mutation	10	127697019	G	C	33	73
BRCA	TCGA-BH-A0AW	DIP2C	SNP	Missense_Mutation	10	412267	G	A	38	100
BRCA	TCGA-BH-A0AW	ERCC6	SNP	Missense_Mutation	10	50667204	G	A	45	56
BRCA	TCGA-BH-A0AW	C10orf12	SNP	Missense_Mutation	10	98743922	G	C	45	67
BRCA	TCGA-BH-A0AW	UBTD1	SNP	Silent	10	99330208	C	T	30	60
BRCA	TCGA-BH-A0AW	SBF2	SNP	Missense_Mutation	11	10024173	G	A	33	79
BRCA	TCGA-BH-A0AW	LAYN	SNP	Silent	11	111414805	G	C	45	54
BRCA	TCGA-BH-A0AW	NCAM1	SNP	Silent	11	113140962	C	A	29	58
BRCA	TCGA-BH-A0AW	PHLDB1	SNP	Silent	11	118520793	G	A	45	57
BRCA	TCGA-BH-A0AW	PRDM10	SNP	Missense_Mutation	11	129827741	G	A	43	83
BRCA	TCGA-BH-A0AW	SLC17A6	SNP	Missense_Mutation	11	22397543	C	T	26	100
BRCA	TCGA-BH-A0AW	CARS	SNP	Splice_site	11	3023773	C	T	32	80
BRCA	TCGA-BH-A0AW	QSER1	SNP	Missense_Mutation	11	32976846	C	A	28	94
BRCA	TCGA-BH-A0AW	TRIM21	SNP	Missense_Mutation	11	4411449	C	T	23	57
BRCA	TCGA-BH-A0AW	OR5M3	SNP	Missense_Mutation	11	56237193	G	C	41	70
BRCA	TCGA-BH-A0AW	OR10V1	SNP	Silent	11	59480614	G	A	42	51
BRCA	TCGA-BH-A0AW	KRTAP5-10	SNP	Missense_Mutation	11	71276947	G	A	44	82
BRCA	TCGA-BH-A0AW	UHRF1BP1L	SNP	Missense_Mutation	12	100452800	G	A	45	80
BRCA	TCGA-BH-A0AW	CCDC53	SNP	Splice_Site	12	102437882	C	A	18	77
BRCA	TCGA-BH-A0AW	KLRC3	SNP	Missense_Mutation	12	10570980	G	C	33	54
BRCA	TCGA-BH-A0AW	CIT	SNP	Silent	12	120295450	G	A	37	59
BRCA	TCGA-BH-A0AW	GOLGA3	SNP	Missense_Mutation	12	133367817	C	A	20	83
BRCA	TCGA-BH-A0AW	MPHOSPH8	SNP	Missense_Mutation	13	20233249	C	A	25	57
BRCA	TCGA-BH-A0AW	PROSER1	SNP	Missense_Mutation	13	39587225	G	T	43	55
BRCA	TCGA-BH-A0AW	LRCH1	SNP	Missense_Mutation	13	47262104	G	A	40	56
BRCA	TCGA-BH-A0AW	RCBTB1	SNP	Missense_Mutation	13	50141327	G	A	45	100
BRCA	TCGA-BH-A0AW	TRIM13	DEL	Frame_Shift_Del	13	50587274	TT	-	52	81
BRCA	TCGA-BH-A0AW	ABCC4	SNP	Missense_Mutation	13	95715010	G	T	48	100
BRCA	TCGA-BH-A0AW	TEP1	SNP	Nonsense_Mutation	14	20845520	G	A	45	57
BRCA	TCGA-BH-A0AW	CAPN3	SNP	Splice_Site	15	42646653	T	A	57	47
BRCA	TCGA-BH-A0AW	DENND4A	SNP	Silent	15	65962134	C	T	30	55
BRCA	TCGA-BH-A0AW	ATF7IP2	SNP	Silent	16	10524750	C	T	32	47
BRCA	TCGA-BH-A0AW	PDP2	SNP	Missense_Mutation	16	66919143	G	A	39	100
BRCA	TCGA-BH-A0AW	PMFBP1	SNP	Silent	16	72164214	C	G	29	54
BRCA	TCGA-BH-A0AW	DNAH9	SNP	Missense_Mutation	17	11672535	G	A	47	100
BRCA	TCGA-BH-A0AW	SMYD4	SNP	Silent	17	1703215	C	T	31	50
BRCA	TCGA-BH-A0AW	RAB11FIP4	SNP	Nonsense_Mutation	17	29858682	C	T	25	98
BRCA	TCGA-BH-A0AW	LPO	SNP	Nonsense_Mutation	17	56329630	A	T	5	46
BRCA	TCGA-BH-A0AW	USP32	SNP	Missense_Mutation	17	58292120	G	A	39	100
BRCA	TCGA-BH-A0AW	TP53	SNP	Missense_Mutation	17	7577129	A	G	1	73
BRCA	TCGA-BH-A0AW	AZI1	SNP	Splice_site	17	79168770	C	G	32	55
BRCA	TCGA-BH-A0AW	RNF138	SNP	Missense_Mutation	18	29691779	G	A	40	86
BRCA	TCGA-BH-A0AW	TPGS2	SNP	Silent	18	34380248	G	C	45	99
BRCA	TCGA-BH-A0AW	ZNF236	SNP	Silent	18	74625817	C	T	24	55
BRCA	TCGA-BH-A0AW	RALBP1	SNP	Silent	18	9533749	C	T	27	41
BRCA	TCGA-BH-A0AW	SWSAP1	SNP	Missense_Mutation	19	11486225	C	T	28	78
BRCA	TCGA-BH-A0AW	ZNF440	SNP	Missense_Mutation	19	11943231	C	G	25	83
BRCA	TCGA-BH-A0AW	PRKACA	SNP	Silent	19	14213652	G	A	37	50
BRCA	TCGA-BH-A0AW	ZNF253	SNP	Silent	19	20002371	C	T	25	59
BRCA	TCGA-BH-A0AW	ZNF429	SNP	Missense_Mutation	19	21719844	G	A	34	45
BRCA	TCGA-BH-A0AW	CYP2S1	SNP	Missense_Mutation	19	41703830	G	A	33	42
BRCA	TCGA-BH-A0AW	PLEKHA4	SNP	Silent	19	49364911	G	A	37	49
BRCA	TCGA-BH-A0AW	MYH14	SNP	Silent	19	50753840	G	A	40	52
BRCA	TCGA-BH-A0AW	ETFB	SNP	Missense_Mutation	19	51848506	C	T	29	74
BRCA	TCGA-BH-A0AW	ZNF578	SNP	Missense_Mutation	19	53014007	C	A	21	47
BRCA	TCGA-BH-A0AW	ZNF776	SNP	Missense_Mutation	19	58265573	C	T	29	51
BRCA	TCGA-BH-A0AW	MUC16	SNP	Missense_Mutation	19	9067623	G	A	37	60
BRCA	TCGA-BH-A0AW	ZNF562	SNP	Missense_Mutation	19	9764242	G	C	45	82
BRCA	TCGA-BH-A0AW	RGPD4	SNP	Silent	2	108487659	C	T	20	55
BRCA	TCGA-BH-A0AW	TTN	SNP	Silent	2	179612700	C	T	21	48
BRCA	TCGA-BH-A0AW	COL5A2	SNP	Missense_Mutation	2	189950468	C	T	29	89
BRCA	TCGA-BH-A0AW	ANKAR	SNP	Nonsense_Mutation	2	190569785	C	G	29	88
BRCA	TCGA-BH-A0AW	CTLA4	SNP	Missense_Mutation	2	204737449	C	G	32	81
BRCA	TCGA-BH-A0AW	APOB	DEL	Frame_Shift_Del	2	21232581	TTATC	-	64	59
BRCA	TCGA-BH-A0AW	SH3BP4	SNP	Silent	2	235951351	G	A	37	41
BRCA	TCGA-BH-A0AW	ITSN2	DEL	Frame_Shift_Del	2	24469072	T	-	54	93
BRCA	TCGA-BH-A0AW	DNAJC27	SNP	Nonsense_Mutation	2	25180735	C	A	32	97
BRCA	TCGA-BH-A0AW	CGREF1	SNP	Silent	2	27324340	G	A	39	37
BRCA	TCGA-BH-A0AW	ASAP2	SNP	Silent	2	9531255	C	T	26	86
BRCA	TCGA-BH-A0AW	CSE1L	DEL	In_Frame_Del	20	47691354	GAG	-	45	98
BRCA	TCGA-BH-A0AW	SPATA2	SNP	Missense_Mutation	20	48523073	C	G	32	84
BRCA	TCGA-BH-A0AW	ADRM1	SNP	Missense_Mutation	20	60878683	A	G	2	52
BRCA	TCGA-BH-A0AW	LAMA5	SNP	Missense_Mutation	20	60900388	C	T	23	49
BRCA	TCGA-BH-A0AW	PLCB1	SNP	Splice_Site	20	8769095	G	C	34	97
BRCA	TCGA-BH-A0AW	APP	SNP	Missense_Mutation	21	27354686	C	G	29	97
BRCA	TCGA-BH-A0AW	TIAM1	SNP	Nonsense_Mutation	21	32492859	G	A	45	62
BRCA	TCGA-BH-A0AW	SCAF4	SNP	Silent	21	33073365	T	C	60	46
BRCA	TCGA-BH-A0AW	DSCAM	SNP	Silent	21	41710062	G	C	33	54
BRCA	TCGA-BH-A0AW	CECR5	SNP	Silent	22	17619469	G	A	39	36
BRCA	TCGA-BH-A0AW	PRAME	SNP	Nonsense_Mutation	22	22892667	G	C	45	56
BRCA	TCGA-BH-A0AW	GTPBP1	SNP	Nonstop_Mutation	22	39111931	G	C	45	57
BRCA	TCGA-BH-A0AW	SERPINA7	SNP	Nonsense_Mutation	23	105278294	G	A	45	50
BRCA	TCGA-BH-A0AW	STAG2	SNP	Missense_Mutation	23	123224532	C	T	26	79
BRCA	TCGA-BH-A0AW	BCORL1	SNP	Missense_Mutation	23	129147805	C	T	30	61
BRCA	TCGA-BH-A0AW	PASD1	SNP	Silent	23	150780207	T	A	54	52
BRCA	TCGA-BH-A0AW	RAI2	SNP	Missense_Mutation	23	17818739	T	G	64	55
BRCA	TCGA-BH-A0AW	MAP7D2	SNP	Silent	23	20030640	C	T	29	59
BRCA	TCGA-BH-A0AW	PHF8	SNP	Silent	23	54069105	G	A	45	73
BRCA	TCGA-BH-A0AW	ZCCHC13	SNP	Silent	23	73524431	G	A	33	57
BRCA	TCGA-BH-A0AW	SLC12A8	SNP	Silent	3	124826851	C	T	29	73
BRCA	TCGA-BH-A0AW	TMCC1	SNP	Missense_Mutation	3	129389511	G	C	36	83
BRCA	TCGA-BH-A0AW	HPS3	SNP	Missense_Mutation	3	148871407	G	C	33	94
BRCA	TCGA-BH-A0AW	B3GALNT1	SNP	Missense_Mutation	3	160804170	C	G	30	60
BRCA	TCGA-BH-A0AW	WDR49	DEL	Frame_Shift_Del	3	167277905	G	-	35	56
BRCA	TCGA-BH-A0AW	LRRIQ4	SNP	Missense_Mutation	3	169539922	G	C	33	53
BRCA	TCGA-BH-A0AW	ECT2	SNP	Missense_Mutation	3	172534566	G	A	33	64
BRCA	TCGA-BH-A0AW	GOLGA4	SNP	Missense_Mutation	3	37357021	G	A	45	85
BRCA	TCGA-BH-A0AW	COL7A1	SNP	Missense_Mutation	3	48612531	C	T	30	79
BRCA	TCGA-BH-A0AW	GBE1	SNP	Missense_Mutation	3	81584455	C	T	29	83
BRCA	TCGA-BH-A0AW	DCBLD2	SNP	Silent	3	98518306	G	A	40	22
BRCA	TCGA-BH-A0AW	MTTP	SNP	Silent	4	100521863	C	G	21	48
BRCA	TCGA-BH-A0AW	ZNF827	SNP	Missense_Mutation	4	146807106	C	T	30	86
BRCA	TCGA-BH-A0AW	ZNF718	SNP	Missense_Mutation	4	155296	A	T	3	52
BRCA	TCGA-BH-A0AW	PAM	SNP	Missense_Mutation	5	102237088	G	C	37	66
BRCA	TCGA-BH-A0AW	CCT5	SNP	Missense_Mutation	5	10261724	C	T	17	99
BRCA	TCGA-BH-A0AW	HSD17B4	SNP	Missense_Mutation	5	118835111	C	G	30	92
BRCA	TCGA-BH-A0AW	PHF15	SNP	Missense_Mutation	5	133901983	G	A	42	62
BRCA	TCGA-BH-A0AW	NDUFA2	SNP	Missense_Mutation	5	140025248	G	C	40	56
BRCA	TCGA-BH-A0AW	PCDHGA9	SNP	Silent	5	140783647	C	T	23	22
BRCA	TCGA-BH-A0AW	TRIO	SNP	Silent	5	14399176	G	A	48	54
BRCA	TCGA-BH-A0AW	COL23A1	SNP	Missense_Mutation	5	177695751	G	A	41	75
BRCA	TCGA-BH-A0AW	IL7R	SNP	Missense_Mutation	5	35867545	A	C	1	44
BRCA	TCGA-BH-A0AW	TRIP13	SNP	Missense_Mutation	5	914588	C	G	29	65
BRCA	TCGA-BH-A0AW	MAK	SNP	Missense_Mutation	6	10802211	G	C	33	88
BRCA	TCGA-BH-A0AW	HIVEP1	SNP	Missense_Mutation	6	12121958	G	A	38	100
BRCA	TCGA-BH-A0AW	UTRN	SNP	Missense_Mutation	6	145075868	G	A	45	93
BRCA	TCGA-BH-A0AW	SYNE1	SNP	Missense_Mutation	6	152655294	T	A	64	63
BRCA	TCGA-BH-A0AW	OR12D3	SNP	Missense_Mutation	6	29342398	G	C	35	49
BRCA	TCGA-BH-A0AW	TRIM10	SNP	Missense_Mutation	6	30124770	G	A	37	68
BRCA	TCGA-BH-A0AW	SRPK1	SNP	Missense_Mutation	6	35838268	C	G	29	62
BRCA	TCGA-BH-A0AW	COL12A1	SNP	Silent	6	75833788	T	C	55	47
BRCA	TCGA-BH-A0AW	COL12A1	SNP	Silent	6	75893166	G	A	45	51
BRCA	TCGA-BH-A0AW	C7orf58	SNP	Missense_Mutation	7	120876775	G	C	44	71
BRCA	TCGA-BH-A0AW	TNPO3	SNP	Missense_Mutation	7	128658066	G	A	45	84
BRCA	TCGA-BH-A0AW	CPA1	SNP	Missense_Mutation	7	130023271	G	A	37	96
BRCA	TCGA-BH-A0AW	TRPV6	SNP	Silent	7	142573242	G	C	33	49
BRCA	TCGA-BH-A0AW	CARD11	SNP	Silent	7	2979469	G	T	37	83
BRCA	TCGA-BH-A0AW	PKD1L1	SNP	Missense_Mutation	7	47897385	G	A	39	53
BRCA	TCGA-BH-A0AW	SBDS	DEL	In_Frame_Del	7	66453378	CTT	-	24	78
BRCA	TCGA-BH-A0AW	ABCB4	SNP	Missense_Mutation	7	87051523	C	T	29	61
BRCA	TCGA-BH-A0AW	TG	SNP	Missense_Mutation	8	133899016	C	G	20	74
BRCA	TCGA-BH-A0AW	KCNK9	DEL	Frame_Shift_Del	8	140631236	CTCGCCCAGGCTCTGGAACA	-	28	71
BRCA	TCGA-BH-A0AW	EBF2	SNP	Missense_Mutation	8	25715895	A	C	3	70
BRCA	TCGA-BH-A0AW	TEX15	SNP	Silent	8	30700081	G	A	34	54
BRCA	TCGA-BH-A0AW	HGSNAT	SNP	Missense_Mutation	8	43047544	G	A	37	52
BRCA	TCGA-BH-A0AW	DEFA4	SNP	Missense_Mutation	8	6793615	C	T	31	40
BRCA	TCGA-BH-A0AW	ZFHX4	DEL	Frame_Shift_Del	8	77764171	AAAA	-	13	89
BRCA	TCGA-BH-A0AW	PAG1	SNP	Missense_Mutation	8	81897162	A	G	14	56
BRCA	TCGA-BH-A0AW	DECR1	SNP	Splice_site	8	91029554	G	C	39	86
BRCA	TCGA-BH-A0AW	PDP1	SNP	Nonsense_Mutation	8	94934414	C	T	31	82
BRCA	TCGA-BH-A0AW	CPQ	SNP	Missense_Mutation	8	97797310	G	C	33	96
BRCA	TCGA-BH-A0AW	STX17	SNP	Silent	9	102713416	G	A	33	55
BRCA	TCGA-BH-A0AW	STXBP1	SNP	Missense_Mutation	9	130423461	G	A	46	97
BRCA	TCGA-BH-A0AW	ZNF658	SNP	Missense_Mutation	9	40774338	T	A	59	50
BRCA	TCGA-BH-A0AW	DOCK8	SNP	Missense_Mutation	9	434905	C	G	27	99
BRCA	TCGA-BH-A0AW	JAK2	SNP	Missense_Mutation	9	5029900	G	T	33	88
BRCA	TCGA-BH-A0AW	ZNF510	SNP	Silent	9	99521783	C	T	32	53
BRCA	TCGA-BH-A0AY	PDE4DIP	SNP	Silent	1	144904729	C	T	29	63
BRCA	TCGA-BH-A0AY	ZNF687	DEL	Frame_Shift_Del	1	151261880	AC	-	10	89
BRCA	TCGA-BH-A0AY	POGK	SNP	Silent	1	166819226	G	A	45	49
BRCA	TCGA-BH-A0AY	HMCN1	SNP	Missense_Mutation	1	185833711	A	C	14	78
BRCA	TCGA-BH-A0AY	TRIM67	SNP	Silent	1	231344841	C	T	19	49
BRCA	TCGA-BH-A0AY	TRIM67	SNP	Missense_Mutation	1	231351163	C	T	27	61
BRCA	TCGA-BH-A0AY	RPS6KA1	SNP	Missense_Mutation	1	26885381	G	A	37	86
BRCA	TCGA-BH-A0AY	WLS	SNP	Missense_Mutation	1	68624838	G	C	40	61
BRCA	TCGA-BH-A0AY	DHTKD1	SNP	Missense_Mutation	10	12129635	G	A	48	64
BRCA	TCGA-BH-A0AY	MYO3A	SNP	Silent	10	26457784	C	T	27	49
BRCA	TCGA-BH-A0AY	PPP3CB	SNP	Missense_Mutation	10	75204476	T	A	50	64
BRCA	TCGA-BH-A0AY	BSX	SNP	Nonsense_Mutation	11	122850010	G	A	40	59
BRCA	TCGA-BH-A0AY	RNF34	SNP	Missense_Mutation	12	121858126	G	A	38	46
BRCA	TCGA-BH-A0AY	MLXIP	SNP	Missense_Mutation	12	122614165	A	G	7	73
BRCA	TCGA-BH-A0AY	TMEM132B	SNP	Silent	12	126004087	G	T	37	14
BRCA	TCGA-BH-A0AY	PIWIL1	SNP	Nonsense_Mutation	12	130833872	C	T	31	70
BRCA	TCGA-BH-A0AY	PROSER1	SNP	Missense_Mutation	13	39587641	C	A	19	53
BRCA	TCGA-BH-A0AY	MEIS2	SNP	Missense_Mutation	15	37184562	G	A	43	80
BRCA	TCGA-BH-A0AY	VPS18	SNP	Missense_Mutation	15	41192326	G	A	40	55
BRCA	TCGA-BH-A0AY	CAPN3	SNP	Silent	15	42652165	C	T	31	33
BRCA	TCGA-BH-A0AY	IQCH	SNP	Missense_Mutation	15	67652219	G	A	35	38
BRCA	TCGA-BH-A0AY	GDPGP1	SNP	Missense_Mutation	15	90784778	C	T	31	96
BRCA	TCGA-BH-A0AY	IFT140	DEL	Frame_Shift_Del	16	1616239	TG	-	55	25
BRCA	TCGA-BH-A0AY	EEF2K	SNP	Nonsense_Mutation	16	22291592	G	T	45	98
BRCA	TCGA-BH-A0AY	CPAMD8	SNP	Missense_Mutation	19	17014520	T	C	58	85
BRCA	TCGA-BH-A0AY	GPR32	SNP	Silent	19	51273962	G	T	48	52
BRCA	TCGA-BH-A0AY	ANKRD57	SNP	Silent	2	110373509	C	T	31	68
BRCA	TCGA-BH-A0AY	ANKRD57	SNP	Missense_Mutation	2	110373516	A	G	6	75
BRCA	TCGA-BH-A0AY	SPP2	SNP	Missense_Mutation	2	234959496	G	T	45	55
BRCA	TCGA-BH-A0AY	DPYSL5	SNP	Silent	2	27167565	G	A	43	64
BRCA	TCGA-BH-A0AY	C2orf71	SNP	Silent	2	29293783	C	T	17	47
BRCA	TCGA-BH-A0AY	EDA2R	SNP	Silent	23	65819449	C	T	21	55
BRCA	TCGA-BH-A0AY	OGT	SNP	Missense_Mutation	23	70767782	C	T	19	97
BRCA	TCGA-BH-A0AY	DIAPH2	SNP	Missense_Mutation	23	95993637	T	G	56	87
BRCA	TCGA-BH-A0AY	POLQ	SNP	Missense_Mutation	3	121207015	G	A	35	50
BRCA	TCGA-BH-A0AY	ABHD6	SNP	Missense_Mutation	3	58253048	G	C	35	62
BRCA	TCGA-BH-A0AY	PCDHA8	SNP	Missense_Mutation	5	140222893	G	A	42	67
BRCA	TCGA-BH-A0AY	GRIA1	SNP	Missense_Mutation	5	153149914	G	A	44	98
BRCA	TCGA-BH-A0AY	PDZD2	SNP	Missense_Mutation	5	32088295	C	T	31	62
BRCA	TCGA-BH-A0AY	IPCEF1	SNP	Missense_Mutation	6	154481152	C	G	29	58
BRCA	TCGA-BH-A0AY	TRIM24	SNP	Missense_Mutation	7	138189074	C	G	25	69
BRCA	TCGA-BH-A0AY	PURB	SNP	Missense_Mutation	7	44924384	C	A	28	56
BRCA	TCGA-BH-A0AY	BAZ1B	SNP	Missense_Mutation	7	72925144	A	T	4	88
BRCA	TCGA-BH-A0AY	FGL2	SNP	Missense_Mutation	7	76825930	C	T	19	99
BRCA	TCGA-BH-A0AY	WDYHV1	SNP	Splice_site	8	124448694	A	T	12	84
BRCA	TCGA-BH-A0AY	PTPRD	DNP	Missense_Mutation	9	8341726	TC	GG	54	60
BRCA	TCGA-BH-A0AZ	PDE4DIP	SNP	Missense_Mutation	1	144882723	T	G	55	64
BRCA	TCGA-BH-A0AZ	IGSF8	SNP	Missense_Mutation	1	160064882	A	C	16	42
BRCA	TCGA-BH-A0AZ	RXRG	SNP	Silent	1	165398094	T	G	59	46
BRCA	TCGA-BH-A0AZ	EDEM3	SNP	Splice_site	1	184681731	T	G	52	80
BRCA	TCGA-BH-A0AZ	KIF17	SNP	Missense_Mutation	1	21009211	C	T	19	81
BRCA	TCGA-BH-A0AZ	RAB3GAP2	SNP	Missense_Mutation	1	220355687	A	C	1	92
BRCA	TCGA-BH-A0AZ	PTPRU	SNP	Nonsense_Mutation	1	29652166	C	A	29	56
BRCA	TCGA-BH-A0AZ	CYP4X1	SNP	Silent	1	47505115	C	A	30	70
BRCA	TCGA-BH-A0AZ	RPAP2	SNP	Silent	1	92789908	C	T	21	51
BRCA	TCGA-BH-A0AZ	CUBN	DEL	Frame_Shift_Del	10	16893319	ACAG	-	14	53
BRCA	TCGA-BH-A0AZ	GATA3	INS	Frame_Shift_Ins	10	8115982	-	T	44	100
BRCA	TCGA-BH-A0AZ	OR8H2	SNP	Missense_Mutation	11	55872586	A	G	11	49
BRCA	TCGA-BH-A0AZ	CIT	SNP	Missense_Mutation	12	120151420	G	T	40	80
BRCA	TCGA-BH-A0AZ	MLXIP	SNP	Missense_Mutation	12	122617979	C	G	29	67
BRCA	TCGA-BH-A0AZ	DDX11	SNP	Missense_Mutation	12	31256888	G	A	33	47
BRCA	TCGA-BH-A0AZ	LRIG3	SNP	Missense_Mutation	12	59283825	G	C	33	51
BRCA	TCGA-BH-A0AZ	TEX26	SNP	Missense_Mutation	13	31543174	T	C	62	58
BRCA	TCGA-BH-A0AZ	CHD8	SNP	Missense_Mutation	14	21862192	G	T	43	98
BRCA	TCGA-BH-A0AZ	LRRC16B	SNP	Missense_Mutation	14	24538364	G	A	39	75
BRCA	TCGA-BH-A0AZ	HERC1	SNP	Missense_Mutation	15	64017562	T	A	62	92
BRCA	TCGA-BH-A0AZ	ULK2	SNP	Silent	17	19700727	G	A	45	64
BRCA	TCGA-BH-A0AZ	KRTAP9-7	SNP	Missense_Mutation	17	39432019	G	A	48	51
BRCA	TCGA-BH-A0AZ	KPNB1	SNP	Splice_site	17	45754386	G	C	44	99
BRCA	TCGA-BH-A0AZ	CACNA1G	SNP	Silent	17	48668853	C	A	26	57
BRCA	TCGA-BH-A0AZ	CLEC10A	SNP	Missense_Mutation	17	6978532	C	A	28	35
BRCA	TCGA-BH-A0AZ	MAN2B1	SNP	Splice_site	19	12768878	G	C	45	57
BRCA	TCGA-BH-A0AZ	MAN2B1	SNP	Missense_Mutation	19	12769137	G	C	33	67
BRCA	TCGA-BH-A0AZ	MAN2B1	SNP	Silent	19	12769247	G	A	45	66
BRCA	TCGA-BH-A0AZ	PGLS	SNP	Splice_site	19	17627089	G	A	35	59
BRCA	TCGA-BH-A0AZ	ZNF526	SNP	Missense_Mutation	19	42728940	G	A	46	53
BRCA	TCGA-BH-A0AZ	ERF	SNP	Silent	19	42753286	G	A	45	58
BRCA	TCGA-BH-A0AZ	BCAT2	SNP	Silent	19	49310293	C	G	17	53
BRCA	TCGA-BH-A0AZ	MUC16	SNP	Missense_Mutation	19	9091544	A	G	11	45
BRCA	TCGA-BH-A0AZ	RIF1	SNP	Missense_Mutation	2	152299782	G	A	34	78
BRCA	TCGA-BH-A0AZ	DCAF17	SNP	Missense_Mutation	2	172336674	A	C	3	90
BRCA	TCGA-BH-A0AZ	PRDM15	DEL	Frame_Shift_Del	21	43291676	C	-	30	46
BRCA	TCGA-BH-A0AZ	TEX33	DEL	Splice_Site	22	37387521	C	-	18	76
BRCA	TCGA-BH-A0AZ	ARFGAP3	SNP	Splice_Site	22	43227644	T	G	55	74
BRCA	TCGA-BH-A0AZ	ODZ1	SNP	Missense_Mutation	23	123630873	C	T	30	99
BRCA	TCGA-BH-A0AZ	LAS1L	SNP	Missense_Mutation	23	64734716	T	A	60	46
BRCA	TCGA-BH-A0AZ	NR2C2	SNP	Silent	3	15065706	G	A	39	40
BRCA	TCGA-BH-A0AZ	DLG1	SNP	Missense_Mutation	3	196857476	C	A	29	96
BRCA	TCGA-BH-A0AZ	BBS7	SNP	Missense_Mutation	4	122776652	C	A	30	74
BRCA	TCGA-BH-A0AZ	MMAA	SNP	Missense_Mutation	4	146560633	G	T	41	86
BRCA	TCGA-BH-A0AZ	SEC31A	SNP	Missense_Mutation	4	83795849	G	A	46	99
BRCA	TCGA-BH-A0AZ	NIPAL4	SNP	Missense_Mutation	5	156899862	C	A	22	75
BRCA	TCGA-BH-A0AZ	PLK2	DEL	Frame_Shift_Del	5	57751437	GTACCCAAAGCCATAT	-	44	60
BRCA	TCGA-BH-A0AZ	ERBB2IP	SNP	Missense_Mutation	5	65372231	G	A	45	94
BRCA	TCGA-BH-A0AZ	KIAA1919	SNP	Missense_Mutation	6	111587599	T	G	63	52
BRCA	TCGA-BH-A0AZ	SASH1	SNP	Silent	6	148867225	C	T	31	42
BRCA	TCGA-BH-A0AZ	JARID2	SNP	Missense_Mutation	6	15374373	C	T	29	95
BRCA	TCGA-BH-A0AZ	IGF2R	SNP	Silent	6	160500677	A	G	11	34
BRCA	TCGA-BH-A0AZ	TRIM38	SNP	Missense_Mutation	6	25973465	G	T	48	61
BRCA	TCGA-BH-A0AZ	MCM4	SNP	Missense_Mutation	8	48878885	A	T	11	90
BRCA	TCGA-BH-A0AZ	SLCO5A1	SNP	Missense_Mutation	8	70585135	T	C	54	59
BRCA	TCGA-BH-A0AZ	OR13C8	SNP	Missense_Mutation	9	107331596	A	G	8	48
BRCA	TCGA-BH-A0B0	SFT2D2	SNP	Silent	1	168204351	C	T	29	59
BRCA	TCGA-BH-A0B0	HSD11B1	SNP	Missense_Mutation	1	209880330	C	G	32	57
BRCA	TCGA-BH-A0B0	GPATCH2	SNP	Missense_Mutation	1	217688186	A	T	9	62
BRCA	TCGA-BH-A0B0	OR2L5	SNP	Silent	1	248185879	C	T	29	51
BRCA	TCGA-BH-A0B0	FOXD3	SNP	Missense_Mutation	1	63788817	G	A	37	76
BRCA	TCGA-BH-A0B0	CYP2C9	SNP	Missense_Mutation	10	96740960	G	A	45	69
BRCA	TCGA-BH-A0B0	AASDHPPT	SNP	Missense_Mutation	11	105962115	C	G	32	52
BRCA	TCGA-BH-A0B0	GCN1L1	SNP	Silent	12	120567110	G	C	45	55
BRCA	TCGA-BH-A0B0	DNAJC14	SNP	Missense_Mutation	12	56221997	G	A	33	77
BRCA	TCGA-BH-A0B0	VWF	SNP	Silent	12	6125319	G	T	45	49
BRCA	TCGA-BH-A0B0	LRRIQ1	SNP	Missense_Mutation	12	85449856	G	A	45	51
BRCA	TCGA-BH-A0B0	TOX4	SNP	Missense_Mutation	14	21955713	A	T	12	68
BRCA	TCGA-BH-A0B0	ADAMTS7	SNP	Silent	15	79090438	G	A	33	48
BRCA	TCGA-BH-A0B0	RASGRF1	SNP	Nonsense_Mutation	15	79317805	G	A	45	92
BRCA	TCGA-BH-A0B0	C16orf59	SNP	Silent	16	2510938	G	A	45	74
BRCA	TCGA-BH-A0B0	STAT3	SNP	Missense_Mutation	17	40481441	C	T	31	100
BRCA	TCGA-BH-A0B0	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-BH-A0B0	MYH10	SNP	Missense_Mutation	17	8397132	C	A	32	77
BRCA	TCGA-BH-A0B0	CALR3	SNP	Missense_Mutation	19	16601357	C	T	31	74
BRCA	TCGA-BH-A0B0	MUC16	SNP	Missense_Mutation	19	9091474	G	C	33	56
BRCA	TCGA-BH-A0B0	TTLL4	SNP	Missense_Mutation	2	219619083	A	T	7	54
BRCA	TCGA-BH-A0B0	CHMP3	SNP	Missense_Mutation	2	86769398	C	T	32	77
BRCA	TCGA-BH-A0B0	NOP56	SNP	Missense_Mutation	20	2636074	G	A	45	97
BRCA	TCGA-BH-A0B0	EBF4	SNP	Missense_Mutation	20	2736401	G	A	38	92
BRCA	TCGA-BH-A0B0	FITM2	SNP	Silent	20	42935837	G	A	33	68
BRCA	TCGA-BH-A0B0	RPS10L	SNP	Missense_Mutation	20	820161	C	A	21	77
BRCA	TCGA-BH-A0B0	LARGE	SNP	Missense_Mutation	22	33670562	G	A	45	100
BRCA	TCGA-BH-A0B0	NXF5	SNP	Missense_Mutation	23	101097746	C	G	32	50
BRCA	TCGA-BH-A0B0	RAB33A	SNP	Missense_Mutation	23	129318409	G	A	47	72
BRCA	TCGA-BH-A0B0	RAB39B	SNP	Missense_Mutation	23	154490356	C	T	17	93
BRCA	TCGA-BH-A0B0	HUWE1	SNP	Missense_Mutation	23	53589797	C	T	31	98
BRCA	TCGA-BH-A0B0	ATRX	SNP	Missense_Mutation	23	76813032	G	A	38	79
BRCA	TCGA-BH-A0B0	COPG1	SNP	Missense_Mutation	3	128976344	G	A	40	96
BRCA	TCGA-BH-A0B0	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-BH-A0B0	EIF2B5	SNP	Silent	3	183856022	C	T	32	86
BRCA	TCGA-BH-A0B0	ZNF589	SNP	Silent	3	48309446	C	T	32	51
BRCA	TCGA-BH-A0B0	TGFBI	SNP	Silent	5	135389690	C	T	29	52
BRCA	TCGA-BH-A0B0	KIAA0141	SNP	Silent	5	141309823	C	T	31	49
BRCA	TCGA-BH-A0B0	IL17B	SNP	Silent	5	148754037	C	T	24	65
BRCA	TCGA-BH-A0B0	BRIX1	SNP	Silent	5	34915891	G	A	37	49
BRCA	TCGA-BH-A0B0	ADAMTS16	SNP	Silent	5	5262783	G	A	45	16
BRCA	TCGA-BH-A0B0	IGF2R	SNP	Missense_Mutation	6	160494353	C	T	30	79
BRCA	TCGA-BH-A0B0	HIST1H2AG	SNP	Missense_Mutation	6	27100867	A	G	3	85
BRCA	TCGA-BH-A0B0	MMS22L	SNP	Missense_Mutation	6	97627350	T	C	52	80
BRCA	TCGA-BH-A0B0	FBXL13	SNP	Splice_site	7	102453790	C	G	29	49
BRCA	TCGA-BH-A0B0	RADIL	INS	In_Frame_Ins	7	4843213	-	CTGCCAGGG	26	39
BRCA	TCGA-BH-A0B0	AUTS2	SNP	Silent	7	70254986	C	T	23	53
BRCA	TCGA-BH-A0B0	CLIP2	SNP	Silent	7	73790402	G	A	33	63
BRCA	TCGA-BH-A0B0	KIF13B	SNP	Missense_Mutation	8	28999688	C	T	29	83
BRCA	TCGA-BH-A0B0	XKR4	SNP	Missense_Mutation	8	56436760	C	T	27	63
BRCA	TCGA-BH-A0B0	ENSG00000188856	SNP	Silent	8	81471356	G	A	33	70
BRCA	TCGA-BH-A0B0	TMEM38B	SNP	Missense_Mutation	9	108483865	C	T	29	60
BRCA	TCGA-BH-A0B0	SVEP1	SNP	Missense_Mutation	9	113166798	C	G	32	76
BRCA	TCGA-BH-A0B0	NTMT1	SNP	Silent	9	132397668	C	T	29	54
BRCA	TCGA-BH-A0B0	IL33	SNP	Missense_Mutation	9	6252967	G	A	33	64
BRCA	TCGA-BH-A0B1	KIAA0907	SNP	Silent	1	155886454	C	T	28	60
BRCA	TCGA-BH-A0B1	RAB25	SNP	Missense_Mutation	1	156038083	G	A	42	97
BRCA	TCGA-BH-A0B1	OR2T4	SNP	Missense_Mutation	1	248525348	G	A	40	50
BRCA	TCGA-BH-A0B1	TMEM48	SNP	Missense_Mutation	1	54293701	A	C	9	45
BRCA	TCGA-BH-A0B1	ITGB1	SNP	Missense_Mutation	10	33217124	T	G	49	94
BRCA	TCGA-BH-A0B1	C10orf107	SNP	Missense_Mutation	10	63519916	A	C	6	50
BRCA	TCGA-BH-A0B1	TRAF6	SNP	Missense_Mutation	11	36518753	T	C	64	76
BRCA	TCGA-BH-A0B1	OR4C12	SNP	Missense_Mutation	11	50003457	C	T	18	73
BRCA	TCGA-BH-A0B1	ATG16L2	SNP	Missense_Mutation	11	72537859	C	T	23	62
BRCA	TCGA-BH-A0B1	ARHGEF17	SNP	Nonsense_Mutation	11	73064010	C	T	25	71
BRCA	TCGA-BH-A0B1	RPH3A	SNP	Missense_Mutation	12	113314581	G	T	46	74
BRCA	TCGA-BH-A0B1	GRIN2B	SNP	Missense_Mutation	12	13722814	G	A	33	100
BRCA	TCGA-BH-A0B1	PLCZ1	SNP	Silent	12	18876408	C	T	27	49
BRCA	TCGA-BH-A0B1	DDX12	SNP	Silent	12	9584962	C	T	24	82
BRCA	TCGA-BH-A0B1	RASGRP1	SNP	Silent	15	38805032	C	T	27	55
BRCA	TCGA-BH-A0B1	MAP1A	SNP	Missense_Mutation	15	43818899	G	A	39	57
BRCA	TCGA-BH-A0B1	TPM1	DEL	Frame_Shift_Del	15	63336291	C	-	20	71
BRCA	TCGA-BH-A0B1	SYT17	DEL	In_Frame_Del	16	19195122	ACCGTGCGCGTG	-	6	59
BRCA	TCGA-BH-A0B1	ACSM5	SNP	Missense_Mutation	16	20442596	G	A	40	49
BRCA	TCGA-BH-A0B1	B4GALNT2	SNP	Silent	17	47236488	C	A	29	56
BRCA	TCGA-BH-A0B1	MAPK4	SNP	Missense_Mutation	18	48190626	G	A	40	58
BRCA	TCGA-BH-A0B1	SERPINB7	SNP	Silent	18	61463607	T	C	51	50
BRCA	TCGA-BH-A0B1	WDR62	SNP	Missense_Mutation	19	36584983	G	A	41	75
BRCA	TCGA-BH-A0B1	ZNF227	SNP	Silent	19	44738970	G	A	44	48
BRCA	TCGA-BH-A0B1	HSPD1	SNP	Missense_Mutation	2	198352668	T	G	49	45
BRCA	TCGA-BH-A0B1	PIKFYVE	SNP	Silent	2	209190253	C	T	19	50
BRCA	TCGA-BH-A0B1	ABCA12	SNP	Missense_Mutation	2	215813332	C	G	24	46
BRCA	TCGA-BH-A0B1	TTC15	SNP	Silent	2	3428379	T	C	63	47
BRCA	TCGA-BH-A0B1	POLR1A	SNP	Missense_Mutation	2	86258493	T	C	50	69
BRCA	TCGA-BH-A0B1	PCNT	SNP	Missense_Mutation	21	47754627	G	A	40	44
BRCA	TCGA-BH-A0B1	FAM47A	SNP	Missense_Mutation	23	34148841	A	G	11	40
BRCA	TCGA-BH-A0B1	TATDN2	SNP	Silent	3	10301826	T	C	52	71
BRCA	TCGA-BH-A0B1	RUVBL1	SNP	Missense_Mutation	3	127784062	A	C	10	46
BRCA	TCGA-BH-A0B1	OR5K2	SNP	Missense_Mutation	3	98216663	G	A	42	41
BRCA	TCGA-BH-A0B1	CLNK	SNP	Missense_Mutation	4	10527514	G	T	45	60
BRCA	TCGA-BH-A0B1	SEC24B	SNP	Missense_Mutation	4	110442693	C	G	23	87
BRCA	TCGA-BH-A0B1	KIAA1109	SNP	Missense_Mutation	4	123193467	C	T	23	87
BRCA	TCGA-BH-A0B1	GUCY1A3	SNP	Missense_Mutation	4	156618138	G	T	46	54
BRCA	TCGA-BH-A0B1	GPR125	SNP	Missense_Mutation	4	22390729	C	A	20	85
BRCA	TCGA-BH-A0B1	FIP1L1	SNP	Silent	4	54319224	C	A	31	75
BRCA	TCGA-BH-A0B1	TIGD2	SNP	Missense_Mutation	4	90035623	C	A	32	56
BRCA	TCGA-BH-A0B1	NREP	SNP	Missense_Mutation	5	111066712	C	T	27	87
BRCA	TCGA-BH-A0B1	PCDHA5	SNP	Missense_Mutation	5	140202966	G	A	38	95
BRCA	TCGA-BH-A0B1	GABRB2	SNP	Missense_Mutation	5	160753407	G	A	40	60
BRCA	TCGA-BH-A0B1	GABRA1	SNP	Missense_Mutation	5	161281210	G	A	48	75
BRCA	TCGA-BH-A0B1	ITGA2	SNP	Missense_Mutation	5	52382807	C	T	19	55
BRCA	TCGA-BH-A0B1	MAP7	DEL	Frame_Shift_Del	6	136686953	A	-	15	51
BRCA	TCGA-BH-A0B1	C6orf10	SNP	Missense_Mutation	6	32298378	G	T	41	52
BRCA	TCGA-BH-A0B1	DNAH8	SNP	Missense_Mutation	6	38897434	A	C	6	55
BRCA	TCGA-BH-A0B1	RBM33	SNP	Missense_Mutation	7	155493674	C	G	32	43
BRCA	TCGA-BH-A0B1	HEATR2	SNP	Silent	7	810169	C	T	24	39
BRCA	TCGA-BH-A0B1	TFPI2	DEL	Frame_Shift_Del	7	93518420	C	-	18	21
BRCA	TCGA-BH-A0B1	DENND3	SNP	Missense_Mutation	8	142161880	G	A	42	98
BRCA	TCGA-BH-A0B1	STRBP	SNP	Silent	9	125923337	C	T	31	60
BRCA	TCGA-BH-A0B1	SARDH	SNP	Silent	9	136594964	G	T	39	48
BRCA	TCGA-BH-A0B1	IFNA7	SNP	Nonsense_Mutation	9	21201826	G	T	44	48
BRCA	TCGA-BH-A0B1	TRPM6	SNP	Silent	9	77423061	G	T	35	33
BRCA	TCGA-BH-A0B3	CSMD2	SNP	Missense_Mutation	1	34042946	C	T	23	69
BRCA	TCGA-BH-A0B3	RLF	SNP	Silent	1	40654738	A	G	4	51
BRCA	TCGA-BH-A0B3	SEPHS1	SNP	Missense_Mutation	10	13386865	G	A	48	81
BRCA	TCGA-BH-A0B3	MMP27	SNP	Missense_Mutation	11	102575447	C	G	32	55
BRCA	TCGA-BH-A0B3	DTX4	SNP	Nonsense_Mutation	11	58967208	C	T	19	53
BRCA	TCGA-BH-A0B3	FAT3	SNP	Silent	11	92531859	C	T	32	72
BRCA	TCGA-BH-A0B3	NOS1	SNP	Missense_Mutation	12	117723956	G	A	38	51
BRCA	TCGA-BH-A0B3	VWF	SNP	Silent	12	6134806	C	A	31	45
BRCA	TCGA-BH-A0B3	MKRN3	SNP	Missense_Mutation	15	23811294	C	T	32	53
BRCA	TCGA-BH-A0B3	UNC13C	SNP	Missense_Mutation	15	54306670	A	G	2	52
BRCA	TCGA-BH-A0B3	ADAMTS18	DEL	Frame_Shift_Del	16	77389899	GGTCA	-	39	14
BRCA	TCGA-BH-A0B3	FLJ40504	SNP	Missense_Mutation	17	26603953	C	A	32	62
BRCA	TCGA-BH-A0B3	TP53	SNP	Missense_Mutation	17	7578203	C	T	17	96
BRCA	TCGA-BH-A0B3	LPIN2	DEL	Frame_Shift_Del	18	2939590	TGGGG	-	55	67
BRCA	TCGA-BH-A0B3	GPI	SNP	Missense_Mutation	19	34870465	A	G	6	85
BRCA	TCGA-BH-A0B3	NLRP7	SNP	Missense_Mutation	19	55450913	G	A	38	51
BRCA	TCGA-BH-A0B3	ZEB2	SNP	Missense_Mutation	2	145147116	C	T	32	88
BRCA	TCGA-BH-A0B3	SCN2A	SNP	Missense_Mutation	2	166246050	A	T	16	93
BRCA	TCGA-BH-A0B3	SCN7A	SNP	Missense_Mutation	2	167298131	G	T	37	49
BRCA	TCGA-BH-A0B3	PRKRA	SNP	Missense_Mutation	2	179300974	A	T	3	53
BRCA	TCGA-BH-A0B3	SLC1A4	SNP	Silent	2	65245352	G	A	38	50
BRCA	TCGA-BH-A0B3	TFAP2C	SNP	Missense_Mutation	20	55208476	G	A	45	51
BRCA	TCGA-BH-A0B3	AFF2	SNP	Nonsense_Mutation	23	147743942	G	T	33	74
BRCA	TCGA-BH-A0B3	DMD	SNP	Missense_Mutation	23	32662397	G	A	39	61
BRCA	TCGA-BH-A0B3	KIF4A	SNP	Missense_Mutation	23	69623828	A	T	12	68
BRCA	TCGA-BH-A0B3	EIF4G1	SNP	Missense_Mutation	3	184042726	C	T	27	100
BRCA	TCGA-BH-A0B3	RPL29	INS	In_Frame_Ins	3	52027853	-	CCTTGG	50	53
BRCA	TCGA-BH-A0B3	SNCAIP	SNP	Silent	5	121786792	C	A	21	53
BRCA	TCGA-BH-A0B3	PCDHGB3	SNP	Missense_Mutation	5	140750987	C	A	17	55
BRCA	TCGA-BH-A0B3	PCDHGB3	SNP	Silent	5	140751317	C	T	30	64
BRCA	TCGA-BH-A0B3	OR2V2	SNP	Missense_Mutation	5	180582416	G	C	45	57
BRCA	TCGA-BH-A0B3	ATXN1	SNP	Missense_Mutation	6	16328222	G	A	42	96
BRCA	TCGA-BH-A0B3	HIST1H2AD	SNP	Silent	6	26199318	G	A	33	83
BRCA	TCGA-BH-A0B3	TMEM106B	SNP	Splice_Site	7	12258148	G	A	40	96
BRCA	TCGA-BH-A0B3	GIMAP8	SNP	Missense_Mutation	7	150164402	A	G	2	54
BRCA	TCGA-BH-A0B3	ABL1	SNP	Missense_Mutation	9	133755477	C	A	18	53
BRCA	TCGA-BH-A0B3	KCNT1	DEL	Frame_Shift_Del	9	138683996	AC	-	10	89
BRCA	TCGA-BH-A0B4	PTPN22	SNP	Missense_Mutation	1	114372309	C	G	32	50
BRCA	TCGA-BH-A0B4	TCHHL1	SNP	Missense_Mutation	1	152058657	C	A	32	66
BRCA	TCGA-BH-A0B4	PEAR1	SNP	Missense_Mutation	1	156874586	C	G	28	51
BRCA	TCGA-BH-A0B4	SPOCD1	SNP	Missense_Mutation	1	32279706	G	A	45	54
BRCA	TCGA-BH-A0B4	ZNF25	SNP	Missense_Mutation	10	38241444	C	G	28	71
BRCA	TCGA-BH-A0B4	SORBS1	SNP	Missense_Mutation	10	97141537	C	T	32	99
BRCA	TCGA-BH-A0B4	OR8H2	SNP	Missense_Mutation	11	55873365	C	T	30	70
BRCA	TCGA-BH-A0B4	TRAFD1	SNP	Missense_Mutation	12	112580087	A	T	7	51
BRCA	TCGA-BH-A0B4	DENND5B	SNP	Missense_Mutation	12	31542280	T	A	50	61
BRCA	TCGA-BH-A0B4	ADAMTS20	SNP	Missense_Mutation	12	43837653	G	A	46	96
BRCA	TCGA-BH-A0B4	ASB8	SNP	Missense_Mutation	12	48543359	T	G	52	64
BRCA	TCGA-BH-A0B4	SP7	SNP	Missense_Mutation	12	53722555	A	G	5	87
BRCA	TCGA-BH-A0B4	SLC39A5	SNP	Missense_Mutation	12	56625119	T	C	55	53
BRCA	TCGA-BH-A0B4	USP5	SNP	Missense_Mutation	12	6971685	G	T	36	56
BRCA	TCGA-BH-A0B4	LRRC23	SNP	Nonsense_Mutation	12	7019120	C	T	31	63
BRCA	TCGA-BH-A0B4	C12orf57	DEL	Frame_Shift_Del	12	7053758	GCCA	-	42	92
BRCA	TCGA-BH-A0B4	C12orf57	INS	Frame_Shift_Ins	12	7053762	-	T	19	92
BRCA	TCGA-BH-A0B4	ELF1	SNP	Missense_Mutation	13	41533074	G	C	33	54
BRCA	TCGA-BH-A0B4	SLITRK6	DNP	Missense_Mutation	13	86370546	GA	AG	33	72
BRCA	TCGA-BH-A0B4	DOCK9	SNP	Missense_Mutation	13	99457383	C	A	25	53
BRCA	TCGA-BH-A0B4	MRPL52	SNP	Missense_Mutation	14	23299300	G	A	43	78
BRCA	TCGA-BH-A0B4	BAZ1A	SNP	Missense_Mutation	14	35231037	G	A	33	56
BRCA	TCGA-BH-A0B4	UACA	SNP	Missense_Mutation	15	70971994	C	A	32	81
BRCA	TCGA-BH-A0B4	CD19	SNP	Missense_Mutation	16	28944363	C	T	23	35
BRCA	TCGA-BH-A0B4	OVCA2	SNP	Missense_Mutation	17	1946346	C	G	28	71
BRCA	TCGA-BH-A0B4	CCT6B	SNP	Missense_Mutation	17	33266704	C	G	19	52
BRCA	TCGA-BH-A0B4	AOC2	SNP	Missense_Mutation	17	41002222	G	T	41	99
BRCA	TCGA-BH-A0B4	SP6	SNP	Silent	17	45925220	C	T	21	56
BRCA	TCGA-BH-A0B4	GP1BA	SNP	Silent	17	4837210	A	G	7	48
BRCA	TCGA-BH-A0B4	RNF43	SNP	Missense_Mutation	17	56434847	C	A	18	63
BRCA	TCGA-BH-A0B4	RPS6KB1	SNP	Missense_Mutation	17	58009050	C	G	24	76
BRCA	TCGA-BH-A0B4	AFG3L2	SNP	Missense_Mutation	18	12337422	T	C	50	90
BRCA	TCGA-BH-A0B4	CTAGE1	DEL	Frame_Shift_Del	18	19996918	AGTTTCTTCAA	-	7	56
BRCA	TCGA-BH-A0B4	COL5A3	SNP	Missense_Mutation	19	10097002	C	G	28	57
BRCA	TCGA-BH-A0B4	ZNF554	SNP	Missense_Mutation	19	2834359	G	A	47	86
BRCA	TCGA-BH-A0B4	CYP2S1	SNP	Splice_Site	19	41709354	G	C	33	86
BRCA	TCGA-BH-A0B4	CCDC155	SNP	Missense_Mutation	19	49898468	G	T	43	62
BRCA	TCGA-BH-A0B4	MUC16	SNP	Missense_Mutation	19	9008211	C	T	26	53
BRCA	TCGA-BH-A0B4	ARHGEF4	SNP	Missense_Mutation	2	131688585	G	T	42	53
BRCA	TCGA-BH-A0B4	ICA1L	SNP	Missense_Mutation	2	203653586	C	G	29	74
BRCA	TCGA-BH-A0B4	FIGLA	SNP	Missense_Mutation	2	71012686	G	T	44	50
BRCA	TCGA-BH-A0B4	TRABD2A	SNP	Missense_Mutation	2	85051165	C	T	31	54
BRCA	TCGA-BH-A0B4	ANKRD36C	SNP	Missense_Mutation	2	96521508	G	A	45	51
BRCA	TCGA-BH-A0B4	VWA3B	SNP	Silent	2	98928512	G	T	43	52
BRCA	TCGA-BH-A0B4	SLC12A5	SNP	Missense_Mutation	20	44665392	G	A	42	96
BRCA	TCGA-BH-A0B4	DCAF12L1	SNP	Silent	23	125685704	G	T	47	55
BRCA	TCGA-BH-A0B4	PRPS2	SNP	Missense_Mutation	23	12837706	G	A	39	94
BRCA	TCGA-BH-A0B4	TXLNG	SNP	Silent	23	16859739	C	T	24	43
BRCA	TCGA-BH-A0B4	PLCH1	SNP	Missense_Mutation	3	155199904	C	T	19	33
BRCA	TCGA-BH-A0B4	SI	SNP	Missense_Mutation	3	164764723	G	A	34	74
BRCA	TCGA-BH-A0B4	LRRIQ4	SNP	Silent	3	169540420	G	A	39	17
BRCA	TCGA-BH-A0B4	TNIK	SNP	Silent	3	170875423	C	T	27	22
BRCA	TCGA-BH-A0B4	SCN5A	SNP	Missense_Mutation	3	38655318	T	C	60	88
BRCA	TCGA-BH-A0B4	CX3CR1	SNP	Missense_Mutation	3	39323136	C	A	32	62
BRCA	TCGA-BH-A0B4	KLHL18	SNP	Missense_Mutation	3	47382093	A	T	12	88
BRCA	TCGA-BH-A0B4	KIAA1109	SNP	Nonsense_Mutation	4	123159399	C	T	17	82
BRCA	TCGA-BH-A0B4	SEC31A	SNP	Missense_Mutation	4	83793139	C	A	31	100
BRCA	TCGA-BH-A0B4	GEMIN5	SNP	Missense_Mutation	5	154284974	T	C	51	49
BRCA	TCGA-BH-A0B4	RNF145	SNP	Missense_Mutation	5	158585971	C	G	17	84
BRCA	TCGA-BH-A0B4	C5orf42	SNP	Missense_Mutation	5	37157925	G	C	33	61
BRCA	TCGA-BH-A0B4	GPR98	SNP	Missense_Mutation	5	90059182	G	T	48	54
BRCA	TCGA-BH-A0B4	SYNE1	SNP	Silent	6	152763222	T	C	60	46
BRCA	TCGA-BH-A0B4	HIST1H2BJ	SNP	Silent	6	27100194	C	A	17	71
BRCA	TCGA-BH-A0B4	TAS2R60	SNP	Silent	7	143141397	G	A	45	59
BRCA	TCGA-BH-A0B4	NFE2L3	DEL	Frame_Shift_Del	7	26224166	GA	-	41	51
BRCA	TCGA-BH-A0B4	ADAMDEC1	SNP	Missense_Mutation	8	24259508	T	A	55	75
BRCA	TCGA-BH-A0B4	SLC20A2	SNP	Silent	8	42294512	G	A	40	37
BRCA	TCGA-BH-A0B4	COL15A1	SNP	Missense_Mutation	9	101765816	G	T	39	48
BRCA	TCGA-BH-A0B4	AKNA	SNP	Missense_Mutation	9	117120245	G	A	35	60
BRCA	TCGA-BH-A0B4	UNC13B	SNP	Missense_Mutation	9	35403592	C	T	21	87
BRCA	TCGA-BH-A0B4	VPS13A	SNP	Missense_Mutation	9	79955428	G	A	33	82
BRCA	TCGA-BH-A0B4	C9orf3	SNP	Missense_Mutation	9	97522520	C	T	32	66
BRCA	TCGA-BH-A0B5	LAMTOR2	SNP	Missense_Mutation	1	156024726	A	G	6	73
BRCA	TCGA-BH-A0B5	PLD5	SNP	Missense_Mutation	1	242277235	C	T	27	73
BRCA	TCGA-BH-A0B5	DNAJC9	SNP	Missense_Mutation	10	75003169	C	G	32	90
BRCA	TCGA-BH-A0B5	SPATA19	SNP	Silent	11	133712412	G	A	45	46
BRCA	TCGA-BH-A0B5	OR8J3	SNP	Missense_Mutation	11	55904866	G	A	37	54
BRCA	TCGA-BH-A0B5	TRIM5	SNP	Missense_Mutation	11	5686469	G	C	33	41
BRCA	TCGA-BH-A0B5	MUS81	SNP	Silent	11	65629461	C	T	21	75
BRCA	TCGA-BH-A0B5	CHPT1	SNP	Nonsense_Mutation	12	102117533	C	T	29	85
BRCA	TCGA-BH-A0B5	C12orf42	SNP	Missense_Mutation	12	103695971	G	A	45	51
BRCA	TCGA-BH-A0B5	CDKN1B	SNP	Nonsense_Mutation	12	12870853	C	A	31	92
BRCA	TCGA-BH-A0B5	ZNF268	SNP	Silent	12	133779637	C	T	29	46
BRCA	TCGA-BH-A0B5	ANO2	SNP	Missense_Mutation	12	5936967	C	T	27	76
BRCA	TCGA-BH-A0B5	BBS10	SNP	Missense_Mutation	12	76740150	G	A	44	51
BRCA	TCGA-BH-A0B5	GRK1	DEL	Frame_Shift_Del	13	114324090	TCTG	-	54	85
BRCA	TCGA-BH-A0B5	PPP2R5E	SNP	Missense_Mutation	14	63842801	C	T	29	100
BRCA	TCGA-BH-A0B5	C14orf102	SNP	Missense_Mutation	14	90756755	A	T	9	61
BRCA	TCGA-BH-A0B5	PKD1	SNP	Missense_Mutation	16	2142083	C	G	23	40
BRCA	TCGA-BH-A0B5	CEMP1	SNP	Missense_Mutation	16	2580833	C	G	27	46
BRCA	TCGA-BH-A0B5	NPIPL2	SNP	Missense_Mutation	16	74411912	G	A	41	51
BRCA	TCGA-BH-A0B5	LYZL6	SNP	Missense_Mutation	17	34264771	C	G	32	57
BRCA	TCGA-BH-A0B5	MRPL45	SNP	Silent	17	36478038	G	A	44	53
BRCA	TCGA-BH-A0B5	WSCD1	SNP	Missense_Mutation	17	6021367	G	A	37	92
BRCA	TCGA-BH-A0B5	ALOXE3	SNP	Splice_Site	17	8000125	C	G	32	89
BRCA	TCGA-BH-A0B5	ZNF521	SNP	Silent	18	22806691	C	T	31	28
BRCA	TCGA-BH-A0B5	CYP4F11	SNP	Missense_Mutation	19	16034795	G	C	33	63
BRCA	TCGA-BH-A0B5	RIF1	SNP	Missense_Mutation	2	152320040	G	A	33	69
BRCA	TCGA-BH-A0B5	XIRP2	SNP	Missense_Mutation	2	167760302	C	T	31	58
BRCA	TCGA-BH-A0B5	PSMD1	SNP	Missense_Mutation	2	232035376	G	A	41	100
BRCA	TCGA-BH-A0B5	LCA5L	SNP	Missense_Mutation	21	40783710	C	G	29	60
BRCA	TCGA-BH-A0B5	MAPK1	SNP	Missense_Mutation	22	22162014	C	T	29	98
BRCA	TCGA-BH-A0B5	BTK	SNP	Missense_Mutation	23	100614283	C	T	32	99
BRCA	TCGA-BH-A0B5	VSIG1	SNP	Missense_Mutation	23	107315933	G	A	40	48
BRCA	TCGA-BH-A0B5	RBMXL3	SNP	Silent	23	114424076	C	A	29	45
BRCA	TCGA-BH-A0B5	KIAA1210	SNP	Missense_Mutation	23	118223589	C	G	32	48
BRCA	TCGA-BH-A0B5	FRMPD4	SNP	Silent	23	12734858	C	T	31	49
BRCA	TCGA-BH-A0B5	MAGEB2	SNP	Missense_Mutation	23	30237091	G	A	40	45
BRCA	TCGA-BH-A0B5	APEX2	SNP	Missense_Mutation	23	55033173	G	A	33	68
BRCA	TCGA-BH-A0B5	ATRX	SNP	Missense_Mutation	23	76890106	C	T	21	96
BRCA	TCGA-BH-A0B5	ATRX	SNP	Silent	23	76940061	C	T	29	65
BRCA	TCGA-BH-A0B5	CBLB	SNP	Missense_Mutation	3	105439088	C	T	30	100
BRCA	TCGA-BH-A0B5	CNTN6	SNP	Nonsense_Mutation	3	1424982	C	T	29	83
BRCA	TCGA-BH-A0B5	PIK3CA	DEL	In_Frame_Del	3	178916944	AAG	-	1	89
BRCA	TCGA-BH-A0B5	RARB	SNP	Silent	3	25622090	C	T	29	86
BRCA	TCGA-BH-A0B5	TGFBR2	SNP	Missense_Mutation	3	30691805	G	A	45	73
BRCA	TCGA-BH-A0B5	CWH43	SNP	Missense_Mutation	4	49030718	C	G	32	60
BRCA	TCGA-BH-A0B5	PF4	SNP	Splice_site	4	74847580	C	T	23	63
BRCA	TCGA-BH-A0B5	SLC12A2	SNP	Missense_Mutation	5	127474341	C	G	32	55
BRCA	TCGA-BH-A0B5	PCDHB1	SNP	Missense_Mutation	5	140431164	G	C	33	100
BRCA	TCGA-BH-A0B5	ZNF131	SNP	Missense_Mutation	5	43175143	G	C	33	55
BRCA	TCGA-BH-A0B5	ZSCAN12	SNP	Silent	6	28358960	C	T	32	50
BRCA	TCGA-BH-A0B5	GPR110	SNP	Missense_Mutation	6	46977528	C	A	26	86
BRCA	TCGA-BH-A0B5	RELN	SNP	Missense_Mutation	7	103301856	C	T	23	71
BRCA	TCGA-BH-A0B5	IQUB	SNP	Missense_Mutation	7	123152129	G	A	45	48
BRCA	TCGA-BH-A0B5	EGFR	SNP	Silent	7	55223635	C	A	25	50
BRCA	TCGA-BH-A0B5	NRBP2	SNP	Nonsense_Mutation	8	144918179	C	A	30	94
BRCA	TCGA-BH-A0B5	SNTG1	SNP	Missense_Mutation	8	51363125	C	T	29	80
BRCA	TCGA-BH-A0B5	KCNB2	SNP	Missense_Mutation	8	73849283	G	A	45	83
BRCA	TCGA-BH-A0B5	TGFBR1	SNP	Missense_Mutation	9	101908824	C	G	29	70
BRCA	TCGA-BH-A0B5	C9orf43	SNP	Missense_Mutation	9	116175869	G	C	33	50
BRCA	TCGA-BH-A0B5	KIF12	SNP	Missense_Mutation	9	116854879	C	T	23	54
BRCA	TCGA-BH-A0B5	PAPPA	SNP	Missense_Mutation	9	119097272	C	T	26	83
BRCA	TCGA-BH-A0B5	C5	SNP	Splice_site	9	123722615	G	A	34	77
BRCA	TCGA-BH-A0B5	ZNF484	SNP	Missense_Mutation	9	95608938	G	C	45	56
BRCA	TCGA-BH-A0B5	ZNF484	SNP	Silent	9	95609116	G	C	33	48
BRCA	TCGA-BH-A0B5	ZNF484	SNP	Missense_Mutation	9	95610467	G	C	33	56
BRCA	TCGA-BH-A0B7	HRNR	SNP	Missense_Mutation	1	152191571	C	G	30	53
BRCA	TCGA-BH-A0B7	ROR1	SNP	Missense_Mutation	1	64624790	C	T	29	100
BRCA	TCGA-BH-A0B7	SACS	SNP	Missense_Mutation	13	23910597	C	G	21	98
BRCA	TCGA-BH-A0B7	VPS53	SNP	Silent	17	505056	C	T	23	42
BRCA	TCGA-BH-A0B7	TP53	SNP	Splice_Site	17	7578290	C	T	24	77
BRCA	TCGA-BH-A0B7	TCF4	SNP	Silent	18	52928746	G	A	46	97
BRCA	TCGA-BH-A0B7	TIAM1	SNP	Silent	21	32617864	G	A	44	84
BRCA	TCGA-BH-A0B7	NKAP	SNP	Silent	23	119077341	C	T	27	36
BRCA	TCGA-BH-A0B7	IGSF10	SNP	Missense_Mutation	3	151161292	G	A	39	61
BRCA	TCGA-BH-A0B7	MUC4	SNP	Missense_Mutation	3	195506172	G	C	40	57
BRCA	TCGA-BH-A0B7	PCDHGA12	SNP	Missense_Mutation	5	140810665	A	C	3	52
BRCA	TCGA-BH-A0B7	TPST1	SNP	Nonsense_Mutation	7	65705728	C	T	23	83
BRCA	TCGA-BH-A0B7	CALN1	SNP	Missense_Mutation	7	71743768	G	A	39	45
BRCA	TCGA-BH-A0B7	GSN	SNP	Missense_Mutation	9	124062270	T	G	59	37
BRCA	TCGA-BH-A0B8	RSC1A1	SNP	Silent	1	15987818	C	T	20	50
BRCA	TCGA-BH-A0B8	SPEN	DEL	Frame_Shift_Del	1	16265833	GA	-	45	85
BRCA	TCGA-BH-A0B8	USH2A	SNP	Missense_Mutation	1	215955505	C	A	30	95
BRCA	TCGA-BH-A0B8	MTR	SNP	Silent	1	237058726	G	A	47	59
BRCA	TCGA-BH-A0B8	OR2G6	SNP	Missense_Mutation	1	248685620	G	T	48	52
BRCA	TCGA-BH-A0B8	ZNF672	SNP	Missense_Mutation	1	249141669	G	A	47	65
BRCA	TCGA-BH-A0B8	PIK3CD	SNP	Missense_Mutation	1	9770533	G	A	46	93
BRCA	TCGA-BH-A0B8	DHX32	SNP	Missense_Mutation	10	127530357	A	T	4	85
BRCA	TCGA-BH-A0B8	HHEX	SNP	Silent	10	94452135	A	C	14	57
BRCA	TCGA-BH-A0B8	TECTA	SNP	Silent	11	121000883	C	T	19	29
BRCA	TCGA-BH-A0B8	ST14	SNP	Missense_Mutation	11	130078396	C	T	27	76
BRCA	TCGA-BH-A0B8	DTX4	SNP	Silent	11	58962833	C	T	23	37
BRCA	TCGA-BH-A0B8	POP5	SNP	Nonsense_Mutation	12	121018957	C	A	23	92
BRCA	TCGA-BH-A0B8	STAT2	SNP	Splice_site	12	56750353	C	T	21	90
BRCA	TCGA-BH-A0B8	STAT6	SNP	Missense_Mutation	12	57499326	C	T	18	60
BRCA	TCGA-BH-A0B8	SRGAP1	SNP	Missense_Mutation	12	64474111	C	A	29	95
BRCA	TCGA-BH-A0B8	HERC2	SNP	Missense_Mutation	15	28459404	G	A	38	57
BRCA	TCGA-BH-A0B8	CBLN1	INS	Frame_Shift_Ins	16	49315311	-	A	32	80
BRCA	TCGA-BH-A0B8	STAT5B	SNP	Missense_Mutation	17	40371806	G	A	40	98
BRCA	TCGA-BH-A0B8	ITGB3	SNP	Missense_Mutation	17	45360858	G	A	33	67
BRCA	TCGA-BH-A0B8	SMARCA4	DEL	Frame_Shift_Del	19	11144187	GG	-	35	66
BRCA	TCGA-BH-A0B8	ZNF527	SNP	Missense_Mutation	19	37879753	C	T	29	76
BRCA	TCGA-BH-A0B8	ZFP112	SNP	Silent	19	44834085	C	T	30	54
BRCA	TCGA-BH-A0B8	KLK9	SNP	Nonsense_Mutation	19	51512532	C	T	21	66
BRCA	TCGA-BH-A0B8	SDPR	SNP	Silent	2	192700907	C	T	19	43
BRCA	TCGA-BH-A0B8	C20orf177	SNP	Missense_Mutation	20	58520079	C	T	29	55
BRCA	TCGA-BH-A0B8	RHOXF2B	SNP	Silent	23	119293081	C	T	27	27
BRCA	TCGA-BH-A0B8	PDIA5	SNP	Silent	3	122873870	C	T	24	58
BRCA	TCGA-BH-A0B8	SDHAP2	SNP	Missense_Mutation	3	195400843	G	A	33	67
BRCA	TCGA-BH-A0B8	MUC4	SNP	Missense_Mutation	3	195486094	C	T	29	33
BRCA	TCGA-BH-A0B8	TNK2	SNP	Silent	3	195606001	G	A	38	43
BRCA	TCGA-BH-A0B8	MAGI1	SNP	Missense_Mutation	3	65365083	C	T	23	99
BRCA	TCGA-BH-A0B8	HNRNPD	SNP	Missense_Mutation	4	83277695	T	C	49	91
BRCA	TCGA-BH-A0B8	ADAMTS19	SNP	Nonsense_Mutation	5	129040077	G	A	47	87
BRCA	TCGA-BH-A0B8	PHF15	SNP	Missense_Mutation	5	133896481	A	G	11	79
BRCA	TCGA-BH-A0B8	PCDHA1	SNP	Missense_Mutation	5	140167742	C	T	23	53
BRCA	TCGA-BH-A0B8	MYO10	SNP	Missense_Mutation	5	16675085	G	C	44	100
BRCA	TCGA-BH-A0B8	BTNL3	SNP	Missense_Mutation	5	180420116	C	A	30	50
BRCA	TCGA-BH-A0B8	SYNE1	SNP	Silent	6	152652194	G	A	33	57
BRCA	TCGA-BH-A0B8	FNDC1	SNP	Silent	6	159670105	C	A	21	54
BRCA	TCGA-BH-A0B8	SMO	SNP	Missense_Mutation	7	128852230	C	T	26	78
BRCA	TCGA-BH-A0B8	SFRP4	SNP	Silent	7	37955825	G	A	38	56
BRCA	TCGA-BH-A0B8	CDK14	SNP	Silent	7	90233551	C	T	21	67
BRCA	TCGA-BH-A0B8	ANXA13	SNP	Nonsense_Mutation	8	124693590	G	A	45	81
BRCA	TCGA-BH-A0B9	ECM1	SNP	Missense_Mutation	1	150485271	T	C	55	70
BRCA	TCGA-BH-A0B9	CC2D1B	SNP	Missense_Mutation	1	52824769	C	T	27	53
BRCA	TCGA-BH-A0B9	KANK4	SNP	Silent	1	62740107	C	T	30	45
BRCA	TCGA-BH-A0B9	REXO2	SNP	Missense_Mutation	11	114320615	G	A	37	78
BRCA	TCGA-BH-A0B9	SIPA1	DEL	In_Frame_Del	11	65413699	GGA	-	39	91
BRCA	TCGA-BH-A0B9	TAS2R43	SNP	Missense_Mutation	12	11244488	G	C	41	62
BRCA	TCGA-BH-A0B9	MLL2	SNP	Missense_Mutation	12	49436351	C	G	30	89
BRCA	TCGA-BH-A0B9	SHMT2	SNP	Missense_Mutation	12	57626583	G	A	41	97
BRCA	TCGA-BH-A0B9	USP12	SNP	Missense_Mutation	13	27679970	G	T	33	79
BRCA	TCGA-BH-A0B9	SCAMP2	SNP	Missense_Mutation	15	75146427	G	A	36	53
BRCA	TCGA-BH-A0B9	IQGAP1	SNP	Missense_Mutation	15	91019954	G	T	45	100
BRCA	TCGA-BH-A0B9	TP53	SNP	Missense_Mutation	17	7577106	G	T	41	95
BRCA	TCGA-BH-A0B9	RNF213	SNP	Missense_Mutation	17	78321232	G	C	33	44
BRCA	TCGA-BH-A0B9	MYO5B	SNP	Silent	18	47463624	A	G	5	54
BRCA	TCGA-BH-A0B9	NEDD4L	SNP	Missense_Mutation	18	56010162	C	G	31	71
BRCA	TCGA-BH-A0B9	RYR1	SNP	Missense_Mutation	19	39018962	A	G	3	68
BRCA	TCGA-BH-A0B9	GYS1	SNP	Missense_Mutation	19	49489210	C	T	19	75
BRCA	TCGA-BH-A0B9	MYH14	SNP	Silent	19	50750310	C	T	22	67
BRCA	TCGA-BH-A0B9	CYP26B1	SNP	Nonsense_Mutation	2	72371201	C	A	31	71
BRCA	TCGA-BH-A0B9	KANSL3	SNP	Missense_Mutation	2	97278595	C	T	27	81
BRCA	TCGA-BH-A0B9	ASXL1	SNP	Missense_Mutation	20	31022583	G	C	33	75
BRCA	TCGA-BH-A0B9	ASXL1	SNP	Missense_Mutation	20	31023102	G	C	45	54
BRCA	TCGA-BH-A0B9	ASXL1	SNP	Missense_Mutation	20	31023531	G	A	45	92
BRCA	TCGA-BH-A0B9	ASXL1	SNP	Missense_Mutation	20	31023897	G	T	45	51
BRCA	TCGA-BH-A0B9	ASXL1	SNP	Missense_Mutation	20	31024108	G	T	41	57
BRCA	TCGA-BH-A0B9	PSMA7	SNP	Silent	20	60714888	C	T	24	64
BRCA	TCGA-BH-A0B9	TMPRSS15	SNP	Silent	21	19666646	G	C	33	48
BRCA	TCGA-BH-A0B9	WWC3	DEL	Frame_Shift_Del	23	10102551	C	-	26	56
BRCA	TCGA-BH-A0B9	SLC22A14	DEL	Frame_Shift_Del	3	38348770	CG	-	19	38
BRCA	TCGA-BH-A0B9	SLC22A14	DEL	Frame_Shift_Del	3	38348773	AGAAG	-	3	51
BRCA	TCGA-BH-A0B9	CLNK	SNP	Missense_Mutation	4	10522444	G	A	40	52
BRCA	TCGA-BH-A0B9	SGCD	SNP	Missense_Mutation	5	156074477	C	T	27	83
BRCA	TCGA-BH-A0B9	LPA	SNP	Missense_Mutation	6	161022000	C	G	19	43
BRCA	TCGA-BH-A0B9	NOTCH4	SNP	Missense_Mutation	6	32180644	G	A	43	56
BRCA	TCGA-BH-A0B9	KIAA0895	SNP	Missense_Mutation	7	36366445	C	T	26	49
BRCA	TCGA-BH-A0B9	ZNF655	SNP	Silent	7	99158245	G	A	33	51
BRCA	TCGA-BH-A0B9	ZFPM2	SNP	Missense_Mutation	8	106814408	G	A	37	100
BRCA	TCGA-BH-A0B9	XKR4	SNP	Missense_Mutation	8	56435863	G	A	40	86
BRCA	TCGA-BH-A0B9	RABGAP1	SNP	Silent	9	125863868	G	A	44	60
BRCA	TCGA-BH-A0BA	POGZ	SNP	Missense_Mutation	1	151377585	A	G	15	87
BRCA	TCGA-BH-A0BA	LCE2B	SNP	Missense_Mutation	1	152659368	C	A	30	64
BRCA	TCGA-BH-A0BA	KIF21B	SNP	Missense_Mutation	1	200969636	C	T	27	51
BRCA	TCGA-BH-A0BA	AVPR1B	SNP	Missense_Mutation	1	206224520	T	A	55	59
BRCA	TCGA-BH-A0BA	RGS7	SNP	Missense_Mutation	1	240975222	A	C	1	71
BRCA	TCGA-BH-A0BA	SAAL1	DEL	Frame_Shift_Del	11	18105265	TAGAGGAAGATCTACTG	-	61	51
BRCA	TCGA-BH-A0BA	KIAA0430	SNP	Silent	16	15692757	T	C	52	50
BRCA	TCGA-BH-A0BA	HS3ST4	SNP	Silent	16	26147359	T	C	52	53
BRCA	TCGA-BH-A0BA	CDH1	SNP	Missense_Mutation	16	68844191	C	A	22	81
BRCA	TCGA-BH-A0BA	PHF12	SNP	Nonsense_Mutation	17	27238154	G	A	37	63
BRCA	TCGA-BH-A0BA	ZNF841	SNP	Missense_Mutation	19	52570087	A	C	8	79
BRCA	TCGA-BH-A0BA	POTEF	SNP	Missense_Mutation	2	130831831	G	A	39	76
BRCA	TCGA-BH-A0BA	GPR39	SNP	Silent	2	133175212	C	T	19	49
BRCA	TCGA-BH-A0BA	SESTD1	SNP	Missense_Mutation	2	180047811	G	A	41	96
BRCA	TCGA-BH-A0BA	DYRK1A	SNP	Silent	21	38884543	A	G	8	76
BRCA	TCGA-BH-A0BA	KRTAP10-5	SNP	Missense_Mutation	21	46000198	C	G	24	41
BRCA	TCGA-BH-A0BA	GYG2	SNP	Missense_Mutation	23	2772184	G	T	46	88
BRCA	TCGA-BH-A0BA	FOXP3	SNP	Missense_Mutation	23	49107842	G	A	40	54
BRCA	TCGA-BH-A0BA	FAM123B	SNP	Missense_Mutation	23	63412049	G	A	42	92
BRCA	TCGA-BH-A0BA	ACAD9	SNP	Missense_Mutation	3	128631355	C	G	30	65
BRCA	TCGA-BH-A0BA	EPHB1	SNP	Missense_Mutation	3	134920392	C	A	28	100
BRCA	TCGA-BH-A0BA	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0BA	DGKG	SNP	Splice_site	3	185986591	G	A	40	98
BRCA	TCGA-BH-A0BA	WDFY3	SNP	Missense_Mutation	4	85708711	T	G	57	50
BRCA	TCGA-BH-A0BA	MMRN1	SNP	Missense_Mutation	4	90816310	C	T	27	75
BRCA	TCGA-BH-A0BA	PCDHB6	DEL	Frame_Shift_Del	5	140530408	C	-	30	53
BRCA	TCGA-BH-A0BA	NT5DC1	SNP	Missense_Mutation	6	116544201	G	A	45	72
BRCA	TCGA-BH-A0BA	ABCA13	SNP	Missense_Mutation	7	48352730	G	A	38	54
BRCA	TCGA-BH-A0BA	GSDMC	SNP	Silent	8	130777949	G	A	45	56
BRCA	TCGA-BH-A0BA	RXRA	SNP	Silent	9	137328394	C	A	29	55
BRCA	TCGA-BH-A0BC	CEPT1	SNP	Missense_Mutation	1	111724830	A	T	4	58
BRCA	TCGA-BH-A0BC	COPA	SNP	Silent	1	160283863	A	C	3	52
BRCA	TCGA-BH-A0BC	FCGR2A	SNP	Silent	1	161475284	G	A	33	51
BRCA	TCGA-BH-A0BC	UBR4	SNP	Missense_Mutation	1	19464532	C	G	32	96
BRCA	TCGA-BH-A0BC	AHCTF1	SNP	Nonsense_Mutation	1	247079596	C	A	29	76
BRCA	TCGA-BH-A0BC	SFPQ	SNP	Missense_Mutation	1	35656463	T	C	52	93
BRCA	TCGA-BH-A0BC	BCAR3	SNP	Silent	1	94048293	C	T	19	32
BRCA	TCGA-BH-A0BC	AMOTL1	SNP	Silent	11	94532836	G	A	38	51
BRCA	TCGA-BH-A0BC	SRRM4	SNP	Silent	12	119583290	C	T	24	55
BRCA	TCGA-BH-A0BC	PMEL	SNP	Silent	12	56349111	G	A	37	54
BRCA	TCGA-BH-A0BC	ACSS3	SNP	Missense_Mutation	12	81545639	C	T	20	99
BRCA	TCGA-BH-A0BC	MYO5A	SNP	Silent	15	52620094	C	T	18	59
BRCA	TCGA-BH-A0BC	UNC13C	SNP	Silent	15	54556502	T	A	64	63
BRCA	TCGA-BH-A0BC	ANPEP	SNP	Missense_Mutation	15	90349393	C	T	18	60
BRCA	TCGA-BH-A0BC	LYZL6	SNP	Silent	17	34264775	G	A	40	34
BRCA	TCGA-BH-A0BC	TP53	SNP	Missense_Mutation	17	7577539	G	A	39	60
BRCA	TCGA-BH-A0BC	UPF1	SNP	Missense_Mutation	19	18974986	G	T	38	94
BRCA	TCGA-BH-A0BC	ZNF415	SNP	Nonsense_Mutation	19	53612661	C	A	30	61
BRCA	TCGA-BH-A0BC	DPP10	SNP	Missense_Mutation	2	116572515	A	T	8	87
BRCA	TCGA-BH-A0BC	SMYD1	SNP	Silent	2	88390554	C	T	29	74
BRCA	TCGA-BH-A0BC	GAB4	SNP	Missense_Mutation	22	17450868	C	G	32	54
BRCA	TCGA-BH-A0BC	GTSE1	SNP	Missense_Mutation	22	46712235	A	T	12	52
BRCA	TCGA-BH-A0BC	TRAT1	SNP	Nonsense_Mutation	3	108549621	C	T	19	51
BRCA	TCGA-BH-A0BC	STAG1	SNP	Splice_site	3	136136813	C	G	25	98
BRCA	TCGA-BH-A0BC	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-BH-A0BC	WDR48	SNP	Missense_Mutation	3	39136217	C	T	23	86
BRCA	TCGA-BH-A0BC	PCDH7	SNP	Missense_Mutation	4	30725361	G	A	45	68
BRCA	TCGA-BH-A0BC	PCDHGB1	SNP	Silent	5	140731309	G	A	38	25
BRCA	TCGA-BH-A0BC	MEF2C	SNP	Nonsense_Mutation	5	88018447	G	A	38	97
BRCA	TCGA-BH-A0BC	TDRD6	SNP	Missense_Mutation	6	46657115	A	G	8	68
BRCA	TCGA-BH-A0BC	ZFPM2	SNP	Missense_Mutation	8	106431410	T	A	51	69
BRCA	TCGA-BH-A0BC	DPYSL2	SNP	Missense_Mutation	8	26484190	G	A	46	79
BRCA	TCGA-BH-A0BC	FAM22G	SNP	Missense_Mutation	9	99701178	A	C	7	47
BRCA	TCGA-BH-A0BD	KCNT2	SNP	Missense_Mutation	1	196300389	T	C	49	58
BRCA	TCGA-BH-A0BD	RYR2	SNP	Missense_Mutation	1	237955580	C	T	19	100
BRCA	TCGA-BH-A0BD	GNL2	SNP	Missense_Mutation	1	38034775	G	C	36	43
BRCA	TCGA-BH-A0BD	SORCS1	SNP	Missense_Mutation	10	108337210	G	A	38	62
BRCA	TCGA-BH-A0BD	SHANK2	SNP	Missense_Mutation	11	70332515	T	C	63	59
BRCA	TCGA-BH-A0BD	TRIM64B	SNP	Missense_Mutation	11	89609144	A	C	1	46
BRCA	TCGA-BH-A0BD	UBC	DEL	Frame_Shift_Del	12	125397989	TCCTTGTCCTGGA	-	62	86
BRCA	TCGA-BH-A0BD	AAAS	SNP	Silent	12	53714438	G	A	43	46
BRCA	TCGA-BH-A0BD	KIAA1704	SNP	Missense_Mutation	13	45580344	A	G	11	81
BRCA	TCGA-BH-A0BD	ENSG00000188403	SNP	Missense_Mutation	15	20170042	G	A	48	55
BRCA	TCGA-BH-A0BD	LCTL	SNP	Missense_Mutation	15	66853388	G	C	34	75
BRCA	TCGA-BH-A0BD	RTN4	SNP	Missense_Mutation	2	55252287	G	T	41	82
BRCA	TCGA-BH-A0BD	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0BD	MAN2B2	SNP	Silent	4	6610855	C	T	27	52
BRCA	TCGA-BH-A0BD	HCN1	SNP	Missense_Mutation	5	45396610	C	T	23	100
BRCA	TCGA-BH-A0BD	CFB	SNP	Missense_Mutation	6	31914024	T	A	54	75
BRCA	TCGA-BH-A0BD	MRPL2	SNP	Missense_Mutation	6	43022206	C	A	28	98
BRCA	TCGA-BH-A0BD	UBR5	SNP	Silent	8	103298799	C	A	31	49
BRCA	TCGA-BH-A0BD	REXO1L1	SNP	Missense_Mutation	8	86573790	C	T	25	53
BRCA	TCGA-BH-A0BD	C9orf43	SNP	Missense_Mutation	9	116186580	A	G	6	59
BRCA	TCGA-BH-A0BF	PINK1	SNP	Missense_Mutation	1	20964471	T	C	51	61
BRCA	TCGA-BH-A0BF	CAMK1G	SNP	Silent	1	209781258	C	T	31	46
BRCA	TCGA-BH-A0BF	L1TD1	SNP	Silent	1	62673212	C	T	26	55
BRCA	TCGA-BH-A0BF	PHLDB1	SNP	Missense_Mutation	11	118486917	C	A	28	96
BRCA	TCGA-BH-A0BF	TRPM5	SNP	Missense_Mutation	11	2434145	C	T	19	72
BRCA	TCGA-BH-A0BF	HSP90AA1	DEL	In_Frame_Del	14	102551267	TTC	-	64	37
BRCA	TCGA-BH-A0BF	CHRNA3	SNP	Missense_Mutation	15	78894311	C	T	31	100
BRCA	TCGA-BH-A0BF	KRT27	SNP	Silent	17	38935976	G	A	40	41
BRCA	TCGA-BH-A0BF	DLX4	SNP	Missense_Mutation	17	48050503	T	C	54	61
BRCA	TCGA-BH-A0BF	TP53	SNP	Missense_Mutation	17	7577548	C	T	23	94
BRCA	TCGA-BH-A0BF	PTGER1	DEL	Frame_Shift_Del	19	14583537	AGGGTCCAGG	-	3	52
BRCA	TCGA-BH-A0BF	ZNF208	SNP	Missense_Mutation	19	22170078	G	C	33	52
BRCA	TCGA-BH-A0BF	RTN2	SNP	Silent	19	45997923	C	T	29	50
BRCA	TCGA-BH-A0BF	ARHGAP15	SNP	Silent	2	144525681	C	T	18	67
BRCA	TCGA-BH-A0BF	TTN	SNP	Missense_Mutation	2	179647587	T	C	55	94
BRCA	TCGA-BH-A0BF	KLHL30	SNP	Missense_Mutation	2	239057685	G	T	36	73
BRCA	TCGA-BH-A0BF	MAT2A	SNP	Silent	2	85769732	T	C	51	47
BRCA	TCGA-BH-A0BF	MYH7B	SNP	Silent	20	33581196	C	T	21	51
BRCA	TCGA-BH-A0BF	MYBL2	SNP	Missense_Mutation	20	42311462	G	A	35	98
BRCA	TCGA-BH-A0BF	FUNDC1	DEL	In_Frame_Del	23	44386496	TTG	-	52	80
BRCA	TCGA-BH-A0BF	PHKA1	SNP	Missense_Mutation	23	71813106	T	A	58	46
BRCA	TCGA-BH-A0BF	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-BH-A0BF	ERCC8	SNP	Missense_Mutation	5	60199504	T	C	56	75
BRCA	TCGA-BH-A0BF	NUP153	SNP	Missense_Mutation	6	17669532	G	C	33	50
BRCA	TCGA-BH-A0BF	SRF	SNP	Missense_Mutation	6	43141698	G	C	33	58
BRCA	TCGA-BH-A0BF	FSCN1	SNP	Silent	7	5644991	C	T	27	53
BRCA	TCGA-BH-A0BF	HGF	SNP	Missense_Mutation	7	81392029	G	C	36	86
BRCA	TCGA-BH-A0BF	MTERF	SNP	Missense_Mutation	7	91503433	C	G	21	51
BRCA	TCGA-BH-A0BG	PLEKHM2	SNP	Missense_Mutation	1	16043237	T	C	59	93
BRCA	TCGA-BH-A0BG	CENPF	SNP	Silent	1	214794222	T	C	53	47
BRCA	TCGA-BH-A0BG	HSPG2	SNP	Missense_Mutation	1	22176924	A	C	6	75
BRCA	TCGA-BH-A0BG	PCNXL2	SNP	Missense_Mutation	1	233397811	G	A	45	81
BRCA	TCGA-BH-A0BG	ACTN2	SNP	Missense_Mutation	1	236918367	A	C	12	75
BRCA	TCGA-BH-A0BG	ZNF644	SNP	Missense_Mutation	1	91406655	C	T	27	84
BRCA	TCGA-BH-A0BG	LOC100289151	SNP	Missense_Mutation	10	15058964	C	T	25	84
BRCA	TCGA-BH-A0BG	FAM171A1	SNP	Silent	10	15256057	T	C	62	48
BRCA	TCGA-BH-A0BG	SEPT7L	SNP	Missense_Mutation	10	38680963	G	T	42	81
BRCA	TCGA-BH-A0BG	FAM22D	SNP	Missense_Mutation	10	89124862	G	A	37	48
BRCA	TCGA-BH-A0BG	SLC37A2	SNP	Missense_Mutation	11	124947362	G	C	35	69
BRCA	TCGA-BH-A0BG	OR4P4	SNP	Missense_Mutation	11	55406228	T	A	52	55
BRCA	TCGA-BH-A0BG	CHRM1	SNP	Missense_Mutation	11	62677587	G	C	39	67
BRCA	TCGA-BH-A0BG	C11orf16	SNP	Missense_Mutation	11	8950998	C	A	25	56
BRCA	TCGA-BH-A0BG	OTOGL	SNP	Missense_Mutation	12	80658942	G	A	39	51
BRCA	TCGA-BH-A0BG	XPO4	SNP	Silent	13	21382693	G	C	41	53
BRCA	TCGA-BH-A0BG	DIAPH3	SNP	Missense_Mutation	13	60240935	T	C	52	46
BRCA	TCGA-BH-A0BG	LOC100130814	DEL	Frame_Shift_Del	14	101540817	C	-	18	32
BRCA	TCGA-BH-A0BG	GOLGA8E	SNP	Silent	15	23441090	G	A	40	22
BRCA	TCGA-BH-A0BG	ZNF469	SNP	Missense_Mutation	16	88501728	G	C	37	52
BRCA	TCGA-BH-A0BG	PMP22	SNP	Missense_Mutation	17	15134333	C	T	23	38
BRCA	TCGA-BH-A0BG	MED24	SNP	Silent	17	38187823	G	A	43	26
BRCA	TCGA-BH-A0BG	FBXO39	SNP	Missense_Mutation	17	6684022	C	A	25	59
BRCA	TCGA-BH-A0BG	TP53	INS	Frame_Shift_Ins	17	7578246	-	A	25	40
BRCA	TCGA-BH-A0BG	ZNF254	SNP	Missense_Mutation	19	24310770	C	G	32	51
BRCA	TCGA-BH-A0BG	SAPS1	SNP	Missense_Mutation	19	55742202	G	C	43	45
BRCA	TCGA-BH-A0BG	TTN	SNP	Missense_Mutation	2	179443676	C	T	25	74
BRCA	TCGA-BH-A0BG	STAT1	INS	In_Frame_Ins	2	191874683	-	CCAGGC	54	89
BRCA	TCGA-BH-A0BG	LOC100287723	SNP	Missense_Mutation	2	90458676	G	A	34	75
BRCA	TCGA-BH-A0BG	GPAT2	SNP	Missense_Mutation	2	96688802	C	G	18	49
BRCA	TCGA-BH-A0BG	TRAPPC10	SNP	Nonsense_Mutation	21	45479068	C	T	29	100
BRCA	TCGA-BH-A0BG	FAM120C	SNP	Missense_Mutation	23	54099576	C	G	32	80
BRCA	TCGA-BH-A0BG	MYRIP	SNP	Splice_site	3	40291713	A	G	12	73
BRCA	TCGA-BH-A0BG	KLHDC8B	SNP	Missense_Mutation	3	49211701	G	A	43	100
BRCA	TCGA-BH-A0BG	CDKN2AIP	SNP	Missense_Mutation	4	184367676	C	T	29	53
BRCA	TCGA-BH-A0BG	ENSG00000151539	SNP	Missense_Mutation	4	3949637	G	A	39	51
BRCA	TCGA-BH-A0BG	UGT2B28	SNP	Missense_Mutation	4	70288700	G	A	38	70
BRCA	TCGA-BH-A0BG	CHSY3	SNP	Missense_Mutation	5	129520027	A	T	3	63
BRCA	TCGA-BH-A0BG	RPS14	SNP	Missense_Mutation	5	149826455	G	C	34	95
BRCA	TCGA-BH-A0BG	ZDHHC11B	SNP	Silent	5	766939	G	A	40	46
BRCA	TCGA-BH-A0BG	HGC6.3	SNP	Silent	6	168377012	G	T	43	67
BRCA	TCGA-BH-A0BG	OR2J3	SNP	Silent	6	29079925	C	G	29	13
BRCA	TCGA-BH-A0BG	TMEM151B	SNP	Missense_Mutation	6	44274746	G	A	38	82
BRCA	TCGA-BH-A0BG	SAP25	SNP	Silent	7	100170027	G	C	35	46
BRCA	TCGA-BH-A0BG	LAMB4	SNP	Missense_Mutation	7	107732103	C	T	30	62
BRCA	TCGA-BH-A0BG	FAM3C	SNP	Splice_site	7	121018965	A	C	5	79
BRCA	TCGA-BH-A0BG	SEPT13	SNP	Missense_Mutation	7	45776474	C	T	17	83
BRCA	TCGA-BH-A0BG	SLC25A40	SNP	Missense_Mutation	7	87466068	T	G	52	51
BRCA	TCGA-BH-A0BG	KHDRBS3	SNP	Missense_Mutation	8	136619254	T	A	49	54
BRCA	TCGA-BH-A0BG	XKR4	SNP	Silent	8	56435907	G	A	43	56
BRCA	TCGA-BH-A0BG	KDM4C	SNP	Missense_Mutation	9	7011799	G	T	34	98
BRCA	TCGA-BH-A0BJ	CD101	SNP	Silent	1	117576573	C	T	32	45
BRCA	TCGA-BH-A0BJ	CLCA2	SNP	Silent	1	86904570	C	A	30	50
BRCA	TCGA-BH-A0BJ	CREM	SNP	Missense_Mutation	10	35500300	G	T	33	87
BRCA	TCGA-BH-A0BJ		SNP	Missense_Mutation	10	81270316	C	T	26	46
BRCA	TCGA-BH-A0BJ	APOA5	INS	In_Frame_Ins	11	116660880	-	AGG	9	52
BRCA	TCGA-BH-A0BJ	OR10G9	SNP	Missense_Mutation	11	123894588	G	A	33	75
BRCA	TCGA-BH-A0BJ	SLC5A12	SNP	Splice_site	11	26720081	C	T	25	85
BRCA	TCGA-BH-A0BJ	SYVN1	SNP	Missense_Mutation	11	64897307	G	A	38	78
BRCA	TCGA-BH-A0BJ	FREM2	SNP	Missense_Mutation	13	39266380	T	A	49	50
BRCA	TCGA-BH-A0BJ	PLEKHG4	SNP	Missense_Mutation	16	67315673	C	T	27	58
BRCA	TCGA-BH-A0BJ	CBX1	SNP	Missense_Mutation	17	46152423	C	T	30	100
BRCA	TCGA-BH-A0BJ	SLC35B1	SNP	Missense_Mutation	17	47780313	T	C	60	90
BRCA	TCGA-BH-A0BJ	HPS4	SNP	Missense_Mutation	22	26860722	C	A	25	52
BRCA	TCGA-BH-A0BJ	OPN1LW	SNP	Missense_Mutation	23	153421964	G	A	46	64
BRCA	TCGA-BH-A0BJ	PTCHD1	SNP	Nonsense_Mutation	23	23398006	C	A	29	72
BRCA	TCGA-BH-A0BJ	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-BH-A0BJ	CNTN4	SNP	Silent	3	3084016	T	C	57	48
BRCA	TCGA-BH-A0BJ	STARD4	SNP	Missense_Mutation	5	110835685	T	C	49	71
BRCA	TCGA-BH-A0BJ	LPCAT1	SNP	Silent	5	1474147	A	G	14	43
BRCA	TCGA-BH-A0BJ	ACTR3B	SNP	Missense_Mutation	7	152550654	G	A	42	94
BRCA	TCGA-BH-A0BJ	ZNF716	SNP	Nonsense_Mutation	7	57528551	C	A	28	64
BRCA	TCGA-BH-A0BJ	DAB2IP	SNP	Missense_Mutation	9	124522209	G	A	37	97
BRCA	TCGA-BH-A0BL	FBXO44	SNP	Nonsense_Mutation	1	11718332	G	T	37	54
BRCA	TCGA-BH-A0BL	PRPF3	SNP	Missense_Mutation	1	150325444	T	A	58	58
BRCA	TCGA-BH-A0BL	PLA2G2E	SNP	Missense_Mutation	1	20250034	G	T	34	51
BRCA	TCGA-BH-A0BL	RYR2	SNP	Missense_Mutation	1	237889592	G	A	39	71
BRCA	TCGA-BH-A0BL	TCTEX1D1	SNP	Silent	1	67242936	T	G	61	48
BRCA	TCGA-BH-A0BL	USP54	SNP	Missense_Mutation	10	75264684	A	G	13	61
BRCA	TCGA-BH-A0BL	ZNF215	SNP	Missense_Mutation	11	6977547	A	T	3	54
BRCA	TCGA-BH-A0BL	SUOX	SNP	Missense_Mutation	12	56397550	T	G	51	86
BRCA	TCGA-BH-A0BL	RIMKLB	SNP	Missense_Mutation	12	8904625	C	T	19	91
BRCA	TCGA-BH-A0BL	NARG2	SNP	Silent	15	60741135	A	G	3	43
BRCA	TCGA-BH-A0BL	SSTR5	SNP	Missense_Mutation	16	1129206	G	A	38	83
BRCA	TCGA-BH-A0BL	PDILT	SNP	Missense_Mutation	16	20396021	G	T	43	76
BRCA	TCGA-BH-A0BL	C16orf80	SNP	Missense_Mutation	16	58149339	C	T	19	98
BRCA	TCGA-BH-A0BL	VAC14	SNP	Missense_Mutation	16	70818087	T	G	54	54
BRCA	TCGA-BH-A0BL	HYDIN	SNP	Missense_Mutation	16	70900083	G	T	43	49
BRCA	TCGA-BH-A0BL	HYDIN	SNP	Missense_Mutation	16	70954676	G	C	38	83
BRCA	TCGA-BH-A0BL	WDR81	SNP	Missense_Mutation	17	1630714	G	A	40	62
BRCA	TCGA-BH-A0BL	HLF	SNP	Missense_Mutation	17	53398125	C	T	31	67
BRCA	TCGA-BH-A0BL	TP53	SNP	Missense_Mutation	17	7578478	G	T	43	76
BRCA	TCGA-BH-A0BL	ENDOV	SNP	Missense_Mutation	17	78403668	C	G	22	54
BRCA	TCGA-BH-A0BL	VPS4B	SNP	Missense_Mutation	18	61064481	T	G	54	94
BRCA	TCGA-BH-A0BL	FBL	SNP	Missense_Mutation	19	40331123	G	C	37	67
BRCA	TCGA-BH-A0BL	FCAR	SNP	Silent	19	55399555	T	C	58	38
BRCA	TCGA-BH-A0BL	RGPD4	SNP	Nonsense_Mutation	2	108479240	C	T	27	58
BRCA	TCGA-BH-A0BL	MYO1B	SNP	Missense_Mutation	2	192225417	T	G	62	87
BRCA	TCGA-BH-A0BL	ACSL3	SNP	Missense_Mutation	2	223806218	G	A	36	70
BRCA	TCGA-BH-A0BL	SEMA4F	SNP	Missense_Mutation	2	74884993	A	G	4	72
BRCA	TCGA-BH-A0BL	RPS6KA3	SNP	Missense_Mutation	23	20185730	C	T	19	86
BRCA	TCGA-BH-A0BL	PDK3	SNP	Silent	23	24552117	G	T	38	42
BRCA	TCGA-BH-A0BL	GOLGB1	SNP	Nonsense_Mutation	3	121409630	G	A	37	56
BRCA	TCGA-BH-A0BL	TOPBP1	SNP	Missense_Mutation	3	133379890	C	T	31	80
BRCA	TCGA-BH-A0BL	ALS2CL	SNP	Missense_Mutation	3	46717150	C	A	27	51
BRCA	TCGA-BH-A0BL	ZNF330	SNP	Missense_Mutation	4	142154959	A	G	12	71
BRCA	TCGA-BH-A0BL	MMAA	SNP	Missense_Mutation	4	146560483	A	C	4	52
BRCA	TCGA-BH-A0BL	CNGA1	SNP	Missense_Mutation	4	47939288	G	T	46	77
BRCA	TCGA-BH-A0BL	OR2V1	SNP	Missense_Mutation	5	180551841	A	T	16	66
BRCA	TCGA-BH-A0BL	FYB	SNP	Missense_Mutation	5	39202164	T	C	52	43
BRCA	TCGA-BH-A0BL	ENPP3	SNP	Silent	6	132041440	T	C	62	52
BRCA	TCGA-BH-A0BL	KCNQ5	SNP	Missense_Mutation	6	73904812	A	G	10	76
BRCA	TCGA-BH-A0BL	DLX5	SNP	Nonsense_Mutation	7	96653899	G	A	39	65
BRCA	TCGA-BH-A0BL	CSMD3	SNP	Missense_Mutation	8	113504808	C	A	21	99
BRCA	TCGA-BH-A0BL	SLC25A25	SNP	Nonsense_Mutation	9	130863453	G	T	45	98
BRCA	TCGA-BH-A0BM	HRNR	SNP	Missense_Mutation	1	152188277	G	T	33	51
BRCA	TCGA-BH-A0BM	DSCAML1	SNP	Missense_Mutation	11	117651408	G	A	38	85
BRCA	TCGA-BH-A0BM	OSBPL8	SNP	Missense_Mutation	12	76793679	C	T	17	100
BRCA	TCGA-BH-A0BM	CSPG4	SNP	Silent	15	75983021	G	A	33	50
BRCA	TCGA-BH-A0BM	KRT36	SNP	Nonsense_Mutation	17	39645738	C	A	30	64
BRCA	TCGA-BH-A0BM	DDX5	DEL	Frame_Shift_Del	17	62496266	G	-	48	56
BRCA	TCGA-BH-A0BM	TANC1	SNP	Silent	2	160031601	A	G	2	53
BRCA	TCGA-BH-A0BM	ETAA1	SNP	Silent	2	67631500	T	C	61	50
BRCA	TCGA-BH-A0BM	RUNX1	INS	Frame_Shift_Ins	21	36171704	-	TA	44	83
BRCA	TCGA-BH-A0BM	KDM5C	SNP	Silent	23	53247017	A	C	1	63
BRCA	TCGA-BH-A0BM	PCDH11X	SNP	Missense_Mutation	23	91873568	C	G	32	50
BRCA	TCGA-BH-A0BM	RPN1	SNP	Missense_Mutation	3	128356884	C	T	17	61
BRCA	TCGA-BH-A0BM	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-BH-A0BM	ADAMTS9	SNP	Missense_Mutation	3	64554073	G	A	43	87
BRCA	TCGA-BH-A0BM	RGL2	SNP	Missense_Mutation	6	33260312	G	C	47	61
BRCA	TCGA-BH-A0BM	CSMD1	SNP	Missense_Mutation	8	2830770	C	T	23	86
BRCA	TCGA-BH-A0BM	RAD54B	SNP	Nonsense_Mutation	8	95384609	G	T	37	77
BRCA	TCGA-BH-A0BM	TSC1	SNP	Silent	9	135797350	C	T	23	47
BRCA	TCGA-BH-A0BO	USH2A	SNP	Missense_Mutation	1	215847544	C	T	19	71
BRCA	TCGA-BH-A0BO	FAM171A1	SNP	Missense_Mutation	10	15290661	G	A	38	77
BRCA	TCGA-BH-A0BO	TTC17	SNP	Missense_Mutation	11	43428954	G	A	34	97
BRCA	TCGA-BH-A0BO	HCFC2	SNP	Missense_Mutation	12	104461732	G	A	40	100
BRCA	TCGA-BH-A0BO	LRRIQ1	SNP	Missense_Mutation	12	85460647	A	C	9	80
BRCA	TCGA-BH-A0BO	ADAMTSL5	SNP	Silent	19	1507614	G	A	43	52
BRCA	TCGA-BH-A0BO	PRMT1	SNP	Silent	19	50189355	G	A	47	67
BRCA	TCGA-BH-A0BO	RFX2	SNP	Missense_Mutation	19	6001886	G	T	42	61
BRCA	TCGA-BH-A0BO	LTBP1	SNP	Missense_Mutation	2	33540311	C	G	32	53
BRCA	TCGA-BH-A0BO	FAM182A	SNP	Missense_Mutation	20	26063548	G	A	41	54
BRCA	TCGA-BH-A0BO	CD86	SNP	Silent	3	121825056	C	G	29	60
BRCA	TCGA-BH-A0BO	TMCC1	SNP	Missense_Mutation	3	129370451	A	C	10	71
BRCA	TCGA-BH-A0BO	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0BO	ZNF619	SNP	Missense_Mutation	3	40529529	T	C	55	42
BRCA	TCGA-BH-A0BO	PPP3CA	SNP	Missense_Mutation	4	101950343	T	C	54	75
BRCA	TCGA-BH-A0BO	HTT	SNP	Nonsense_Mutation	4	3148607	C	G	29	98
BRCA	TCGA-BH-A0BO	SPINK5	SNP	Missense_Mutation	5	147484520	A	T	5	57
BRCA	TCGA-BH-A0BO	LIFR	DEL	Splice_Site	5	38506735	C	-	32	82
BRCA	TCGA-BH-A0BO	MAP3K1	INS	Frame_Shift_Ins	5	56183240	-	T	20	71
BRCA	TCGA-BH-A0BO	MAP3K1	INS	Frame_Shift_Ins	5	56183296	-	G	7	46
BRCA	TCGA-BH-A0BO	ADAMTS6	SNP	Missense_Mutation	5	64747324	C	T	31	100
BRCA	TCGA-BH-A0BO	CPNE5	SNP	Silent	6	36713227	G	A	42	61
BRCA	TCGA-BH-A0BO	EFHA2	SNP	Silent	8	16944529	A	G	1	57
BRCA	TCGA-BH-A0BO	FBXO25	SNP	Missense_Mutation	8	401409	A	G	16	56
BRCA	TCGA-BH-A0BO	CIZ1	INS	In_Frame_Ins	9	130953101	-	AAC	60	51
BRCA	TCGA-BH-A0BP	SPTA1	SNP	Silent	1	158648298	A	T	9	47
BRCA	TCGA-BH-A0BP	RASAL2	SNP	Missense_Mutation	1	178435229	G	T	33	100
BRCA	TCGA-BH-A0BP	OBSCN	SNP	Silent	1	228432172	C	T	25	47
BRCA	TCGA-BH-A0BP	ACTN2	SNP	Splice_Site	1	236914954	T	A	59	89
BRCA	TCGA-BH-A0BP	TRIM58	SNP	Missense_Mutation	1	248039226	C	T	19	92
BRCA	TCGA-BH-A0BP	FAM167B	SNP	Missense_Mutation	1	32713189	G	A	38	40
BRCA	TCGA-BH-A0BP	OR4F5	SNP	Missense_Mutation	1	69523	G	T	47	72
BRCA	TCGA-BH-A0BP	OBFC1	SNP	Missense_Mutation	10	105658674	G	T	35	78
BRCA	TCGA-BH-A0BP	CAMK1D	SNP	Silent	10	12595305	G	A	38	50
BRCA	TCGA-BH-A0BP	NEBL	SNP	Splice_site	10	21157693	G	T	46	75
BRCA	TCGA-BH-A0BP	SVIL	SNP	Missense_Mutation	10	29839670	G	A	37	60
BRCA	TCGA-BH-A0BP	RTKN2	SNP	Missense_Mutation	10	64000922	C	G	29	87
BRCA	TCGA-BH-A0BP	ASCC1	SNP	Silent	10	73912678	C	T	26	65
BRCA	TCGA-BH-A0BP	SEC24C	SNP	Silent	10	75520490	G	C	43	51
BRCA	TCGA-BH-A0BP	PLAU	SNP	Silent	10	75675049	G	A	45	56
BRCA	TCGA-BH-A0BP	GRID1	SNP	Missense_Mutation	10	87362343	C	A	22	69
BRCA	TCGA-BH-A0BP	MUC6	SNP	Missense_Mutation	11	1016361	G	T	41	59
BRCA	TCGA-BH-A0BP	NUP160	SNP	Missense_Mutation	11	47833723	C	T	28	61
BRCA	TCGA-BH-A0BP	OR51V1	SNP	Missense_Mutation	11	5221089	G	A	42	54
BRCA	TCGA-BH-A0BP	OR8H2	SNP	Missense_Mutation	11	55872841	G	T	44	49
BRCA	TCGA-BH-A0BP	TRIM6	SNP	Missense_Mutation	11	5632304	G	A	41	89
BRCA	TCGA-BH-A0BP	CCND1	SNP	Missense_Mutation	11	69465940	C	T	27	68
BRCA	TCGA-BH-A0BP	XRRA1	SNP	Missense_Mutation	11	74632307	G	A	48	75
BRCA	TCGA-BH-A0BP	VSIG10	SNP	Nonsense_Mutation	12	118511558	G	A	39	59
BRCA	TCGA-BH-A0BP	TCTN2	SNP	Missense_Mutation	12	124191321	C	G	17	37
BRCA	TCGA-BH-A0BP	DNAH10	SNP	Missense_Mutation	12	124417966	G	A	39	99
BRCA	TCGA-BH-A0BP	IAPP	SNP	Missense_Mutation	12	21526336	G	T	45	39
BRCA	TCGA-BH-A0BP	NELL2	SNP	Missense_Mutation	12	44926499	C	T	29	98
BRCA	TCGA-BH-A0BP	ITGA7	SNP	Missense_Mutation	12	56086681	T	G	55	71
BRCA	TCGA-BH-A0BP	LOC643677	SNP	Nonsense_Mutation	13	103390877	G	C	45	55
BRCA	TCGA-BH-A0BP	GAS6	SNP	Silent	13	114530000	C	T	30	48
BRCA	TCGA-BH-A0BP	SLC15A1	SNP	Missense_Mutation	13	99364112	T	A	55	90
BRCA	TCGA-BH-A0BP	OR6S1	SNP	Missense_Mutation	14	21109676	T	A	58	59
BRCA	TCGA-BH-A0BP	STRN3	SNP	Silent	14	31381308	T	C	51	57
BRCA	TCGA-BH-A0BP	SYNE3	SNP	Silent	14	95921720	G	T	34	51
BRCA	TCGA-BH-A0BP	MYO5C	SNP	Missense_Mutation	15	52497096	C	T	30	98
BRCA	TCGA-BH-A0BP	UBAP1L	SNP	Missense_Mutation	15	65386863	C	G	30	71
BRCA	TCGA-BH-A0BP	CLPX	SNP	Missense_Mutation	15	65456441	C	G	32	100
BRCA	TCGA-BH-A0BP	MYO9A	SNP	Silent	15	72144513	G	C	45	60
BRCA	TCGA-BH-A0BP	HCN4	SNP	Silent	15	73635795	C	T	31	53
BRCA	TCGA-BH-A0BP	EFTUD1	SNP	Missense_Mutation	15	82533624	C	T	30	94
BRCA	TCGA-BH-A0BP	SH2B1	SNP	Missense_Mutation	16	28883552	G	A	41	76
BRCA	TCGA-BH-A0BP	PRRT2	SNP	Missense_Mutation	16	29824982	C	T	18	53
BRCA	TCGA-BH-A0BP	MEFV	SNP	Silent	16	3293384	C	T	19	17
BRCA	TCGA-BH-A0BP	CCDC113	SNP	Nonsense_Mutation	16	58287992	G	T	33	70
BRCA	TCGA-BH-A0BP	CTCF	SNP	Silent	16	67644837	A	G	3	53
BRCA	TCGA-BH-A0BP	COG4	SNP	Splice_site	16	70542309	C	T	24	97
BRCA	TCGA-BH-A0BP	CBFA2T3	SNP	Missense_Mutation	16	88952427	C	T	31	95
BRCA	TCGA-BH-A0BP	MYH1	SNP	Missense_Mutation	17	10408797	C	T	29	100
BRCA	TCGA-BH-A0BP	RAD51D	SNP	Missense_Mutation	17	33430502	G	A	41	82
BRCA	TCGA-BH-A0BP	MRC2	DEL	Frame_Shift_Del	17	60758213	C	-	18	50
BRCA	TCGA-BH-A0BP	ABCA8	SNP	Missense_Mutation	17	66925207	T	G	51	56
BRCA	TCGA-BH-A0BP	CD300LF	SNP	Splice_Site	17	72699172	A	T	14	70
BRCA	TCGA-BH-A0BP	TP53	SNP	Missense_Mutation	17	7578534	C	G	32	75
BRCA	TCGA-BH-A0BP	CHD3	SNP	Nonsense_Mutation	17	7798780	C	T	29	64
BRCA	TCGA-BH-A0BP	LMAN1	SNP	Missense_Mutation	18	57016441	C	T	32	68
BRCA	TCGA-BH-A0BP	WDR83OS	SNP	Missense_Mutation	19	12779204	T	G	55	86
BRCA	TCGA-BH-A0BP	CACNA1A	SNP	Missense_Mutation	19	13335577	G	A	38	94
BRCA	TCGA-BH-A0BP	ATP8B3	SNP	Missense_Mutation	19	1783122	G	C	33	58
BRCA	TCGA-BH-A0BP	LOC100287226	SNP	Missense_Mutation	19	22499779	C	T	22	50
BRCA	TCGA-BH-A0BP	SCN1B	SNP	Silent	19	35530584	G	A	39	45
BRCA	TCGA-BH-A0BP	HKR1	SNP	Splice_Site	19	37853010	G	A	33	65
BRCA	TCGA-BH-A0BP	SHD	SNP	Missense_Mutation	19	4290544	G	A	40	66
BRCA	TCGA-BH-A0BP	SHC2	SNP	Missense_Mutation	19	438818	G	T	38	61
BRCA	TCGA-BH-A0BP	KDM4B	SNP	Missense_Mutation	19	5131979	C	A	22	94
BRCA	TCGA-BH-A0BP	CEACAM18	SNP	Missense_Mutation	19	51986358	A	G	11	41
BRCA	TCGA-BH-A0BP	ZNF614	SNP	Missense_Mutation	19	52521663	G	A	39	49
BRCA	TCGA-BH-A0BP	ZNF841	SNP	Missense_Mutation	19	52569672	T	C	52	48
BRCA	TCGA-BH-A0BP	CCDC106	SNP	Missense_Mutation	19	56164049	G	C	33	61
BRCA	TCGA-BH-A0BP	ZNF835	SNP	Missense_Mutation	19	57175732	G	C	39	38
BRCA	TCGA-BH-A0BP	ZNF418	SNP	Missense_Mutation	19	58439287	C	G	21	53
BRCA	TCGA-BH-A0BP	MUC16	SNP	Missense_Mutation	19	9085910	G	T	43	53
BRCA	TCGA-BH-A0BP	MUC16	SNP	Missense_Mutation	19	9090329	T	A	55	50
BRCA	TCGA-BH-A0BP	LRP1B	SNP	Missense_Mutation	2	141253162	A	T	16	56
BRCA	TCGA-BH-A0BP	KCNH7	SNP	Missense_Mutation	2	163302698	A	T	2	93
BRCA	TCGA-BH-A0BP	FIGN	SNP	Missense_Mutation	2	164467143	G	A	44	72
BRCA	TCGA-BH-A0BP	CHN1	SNP	Silent	2	175673727	G	A	45	83
BRCA	TCGA-BH-A0BP	TTN	SNP	Missense_Mutation	2	179479066	C	A	30	100
BRCA	TCGA-BH-A0BP	NEUROD1	SNP	Missense_Mutation	2	182542944	G	A	35	75
BRCA	TCGA-BH-A0BP	PPM1G	SNP	Silent	2	27606873	G	A	40	27
BRCA	TCGA-BH-A0BP	NLRC4	SNP	Missense_Mutation	2	32476391	C	T	31	51
BRCA	TCGA-BH-A0BP	STRN	SNP	Missense_Mutation	2	37111155	G	A	45	80
BRCA	TCGA-BH-A0BP	MTIF2	SNP	Missense_Mutation	2	55463924	C	T	29	98
BRCA	TCGA-BH-A0BP	CTNNA2	SNP	Missense_Mutation	2	80620360	C	T	30	90
BRCA	TCGA-BH-A0BP	CD93	SNP	Missense_Mutation	20	23065739	C	A	26	82
BRCA	TCGA-BH-A0BP	TGM6	SNP	Missense_Mutation	20	2380303	A	T	8	74
BRCA	TCGA-BH-A0BP	DBNDD2	INS	Splice_Site	20	44037247	-	T	40	76
BRCA	TCGA-BH-A0BP	SFI1	SNP	Silent	22	32009792	C	T	32	42
BRCA	TCGA-BH-A0BP	APOBEC3B	SNP	Missense_Mutation	22	39382037	G	A	37	42
BRCA	TCGA-BH-A0BP	ATP11C	SNP	Missense_Mutation	23	138886719	G	A	41	94
BRCA	TCGA-BH-A0BP	SLITRK4	SNP	Missense_Mutation	23	142718314	C	A	19	97
BRCA	TCGA-BH-A0BP	ZFX	SNP	Silent	23	24228434	G	A	33	69
BRCA	TCGA-BH-A0BP	ZNF182	SNP	Silent	23	47836619	G	A	35	38
BRCA	TCGA-BH-A0BP	WAS	SNP	Silent	23	48546700	C	T	31	41
BRCA	TCGA-BH-A0BP	EFCAB12	SNP	Missense_Mutation	3	129120504	G	T	42	81
BRCA	TCGA-BH-A0BP	COL6A5	SNP	Silent	3	130119918	T	C	50	48
BRCA	TCGA-BH-A0BP	GYG1	SNP	Missense_Mutation	3	148744285	G	C	33	76
BRCA	TCGA-BH-A0BP	KNG1	SNP	Missense_Mutation	3	186459855	C	T	17	50
BRCA	TCGA-BH-A0BP	C3orf35	SNP	Missense_Mutation	3	37476359	G	A	35	48
BRCA	TCGA-BH-A0BP	CCDC13	SNP	Missense_Mutation	3	42754772	C	G	32	53
BRCA	TCGA-BH-A0BP	ZNF717	DEL	Frame_Shift_Del	3	75788181	TGAG	-	55	48
BRCA	TCGA-BH-A0BP	EPHA3	SNP	Splice_site	3	89176423	G	T	43	85
BRCA	TCGA-BH-A0BP	MGARP	SNP	Missense_Mutation	4	140196454	C	T	21	79
BRCA	TCGA-BH-A0BP	DCHS2	SNP	Missense_Mutation	4	155410719	C	A	18	51
BRCA	TCGA-BH-A0BP	EPHA5	SNP	Missense_Mutation	4	66467434	C	T	31	100
BRCA	TCGA-BH-A0BP	BMP3	SNP	Missense_Mutation	4	81967606	G	A	39	68
BRCA	TCGA-BH-A0BP	HPSE	DEL	Frame_Shift_Del	4	84216541	TA	-	53	64
BRCA	TCGA-BH-A0BP	SLC6A18	SNP	Silent	5	1232966	G	T	46	47
BRCA	TCGA-BH-A0BP	PCDHGA3	SNP	Missense_Mutation	5	140725012	T	A	50	91
BRCA	TCGA-BH-A0BP	LPCAT1	SNP	Missense_Mutation	5	1463771	C	G	30	50
BRCA	TCGA-BH-A0BP	EGFLAM	SNP	Silent	5	38407076	C	A	21	74
BRCA	TCGA-BH-A0BP	PDE4D	SNP	Missense_Mutation	5	58334711	G	T	41	99
BRCA	TCGA-BH-A0BP	PLG	SNP	Missense_Mutation	6	161137755	C	A	18	48
BRCA	TCGA-BH-A0BP	MAP3K4	DEL	Frame_Shift_Del	6	161470713	G	-	35	58
BRCA	TCGA-BH-A0BP	HIST1H1E	SNP	Missense_Mutation	6	26156800	C	T	28	98
BRCA	TCGA-BH-A0BP	TULP1	SNP	Missense_Mutation	6	35477415	C	A	32	61
BRCA	TCGA-BH-A0BP	BRPF3	SNP	Missense_Mutation	6	36177594	G	C	41	71
BRCA	TCGA-BH-A0BP	ENPP4	SNP	Missense_Mutation	6	46108029	G	T	45	99
BRCA	TCGA-BH-A0BP	DOPEY1	SNP	Silent	6	83847715	C	T	29	50
BRCA	TCGA-BH-A0BP	CADPS2	SNP	Missense_Mutation	7	122114548	C	G	21	100
BRCA	TCGA-BH-A0BP	ZNF467	SNP	Missense_Mutation	7	149463318	C	G	30	64
BRCA	TCGA-BH-A0BP	GIMAP1	SNP	Silent	7	150417441	C	T	24	66
BRCA	TCGA-BH-A0BP	HOXA3	SNP	Missense_Mutation	7	27148069	C	T	27	87
BRCA	TCGA-BH-A0BP	TAX1BP1	SNP	Missense_Mutation	7	27856569	C	G	32	58
BRCA	TCGA-BH-A0BP	GCK	SNP	Missense_Mutation	7	44189394	T	A	57	94
BRCA	TCGA-BH-A0BP	ENSG00000146677	SNP	Missense_Mutation	7	44507638	G	C	33	89
BRCA	TCGA-BH-A0BP	PCLO	SNP	Silent	7	82764214	G	A	39	39
BRCA	TCGA-BH-A0BP	PEX1	SNP	Missense_Mutation	7	92143236	C	T	19	65
BRCA	TCGA-BH-A0BP	ATAD2	SNP	Missense_Mutation	8	124359355	C	T	32	60
BRCA	TCGA-BH-A0BP	PARP10	SNP	Missense_Mutation	8	145057946	C	G	26	55
BRCA	TCGA-BH-A0BP	CSMD1	SNP	Missense_Mutation	8	3216706	C	T	19	100
BRCA	TCGA-BH-A0BP	UNC5D	SNP	Silent	8	35583857	G	A	33	46
BRCA	TCGA-BH-A0BP	FOCAD	SNP	Missense_Mutation	9	20862673	C	G	32	67
BRCA	TCGA-BH-A0BP	PTPLAD2	SNP	Missense_Mutation	9	21011668	A	G	16	68
BRCA	TCGA-BH-A0BP	IFNA4	SNP	Missense_Mutation	9	21187338	C	T	30	49
BRCA	TCGA-BH-A0BP	UNC13B	SNP	Silent	9	35399191	G	A	39	37
BRCA	TCGA-BH-A0BP	MSMP	SNP	Silent	9	35754070	C	A	30	49
BRCA	TCGA-BH-A0BP	C9orf41	SNP	Nonsense_Mutation	9	77613613	G	A	37	60
BRCA	TCGA-BH-A0BQ	NTNG1	SNP	Missense_Mutation	1	107691296	G	T	43	93
BRCA	TCGA-BH-A0BQ	CR2	SNP	Missense_Mutation	1	207644142	G	C	38	49
BRCA	TCGA-BH-A0BQ	SUSD4	SNP	Missense_Mutation	1	223400952	C	T	26	61
BRCA	TCGA-BH-A0BQ	SLC45A1	SNP	Silent	1	8390663	G	A	39	48
BRCA	TCGA-BH-A0BQ	DSCAML1	SNP	Silent	11	117351189	C	T	23	43
BRCA	TCGA-BH-A0BQ	PKNOX2	SNP	Nonsense_Mutation	11	125237868	C	T	27	58
BRCA	TCGA-BH-A0BQ	ST5	SNP	Missense_Mutation	11	8728753	C	T	27	85
BRCA	TCGA-BH-A0BQ	TCTN1	SNP	Missense_Mutation	12	111064227	C	A	18	52
BRCA	TCGA-BH-A0BQ	GRIN2B	SNP	Silent	12	13716941	G	A	39	22
BRCA	TCGA-BH-A0BQ	ZFHX3	SNP	Missense_Mutation	16	72923665	A	T	12	89
BRCA	TCGA-BH-A0BQ	DSG3	SNP	Nonsense_Mutation	18	29041208	G	T	33	72
BRCA	TCGA-BH-A0BQ	VPS4B	SNP	Missense_Mutation	18	61067316	C	T	19	100
BRCA	TCGA-BH-A0BQ	SLC27A5	SNP	Missense_Mutation	19	59010502	C	T	19	91
BRCA	TCGA-BH-A0BQ	FBN3	SNP	Missense_Mutation	19	8201277	C	T	25	96
BRCA	TCGA-BH-A0BQ	IFT172	SNP	Missense_Mutation	2	27667302	C	A	20	59
BRCA	TCGA-BH-A0BQ	WDPCP	SNP	Nonsense_Mutation	2	63714608	G	A	47	75
BRCA	TCGA-BH-A0BQ	DNAH1	SNP	Missense_Mutation	3	52402833	G	A	37	99
BRCA	TCGA-BH-A0BQ	BMPER	SNP	Silent	7	34125684	G	A	47	52
BRCA	TCGA-BH-A0BR	KPRP	SNP	Missense_Mutation	1	152733184	G	A	40	44
BRCA	TCGA-BH-A0BR	LAMTOR2	INS	Frame_Shift_Ins	1	156025183	-	G	3	60
BRCA	TCGA-BH-A0BR	SERPINC1	SNP	Missense_Mutation	1	173883952	C	T	29	76
BRCA	TCGA-BH-A0BR	SLC35F3	SNP	Missense_Mutation	1	234454539	G	T	34	100
BRCA	TCGA-BH-A0BR	TBCE	SNP	Missense_Mutation	1	235597591	G	A	37	63
BRCA	TCGA-BH-A0BR	ZNF238	SNP	Silent	1	244218261	G	A	33	62
BRCA	TCGA-BH-A0BR	LIN28A	SNP	Missense_Mutation	1	26737895	C	A	25	66
BRCA	TCGA-BH-A0BR	KIAA1522	SNP	Missense_Mutation	1	33236015	C	G	30	64
BRCA	TCGA-BH-A0BR	C10orf32	SNP	Missense_Mutation	10	104614108	C	T	19	80
BRCA	TCGA-BH-A0BR	SORCS3	SNP	Missense_Mutation	10	107007042	G	C	45	98
BRCA	TCGA-BH-A0BR	TDRD1	SNP	Missense_Mutation	10	115981122	C	G	32	67
BRCA	TCGA-BH-A0BR	GATA3	DEL	Splice_Site	10	8115697	TTTAGA	-	60	60
BRCA	TCGA-BH-A0BR	TRIM49C	SNP	Missense_Mutation	11	89774444	G	A	39	54
BRCA	TCGA-BH-A0BR	SART3	SNP	Missense_Mutation	12	108954695	G	A	41	68
BRCA	TCGA-BH-A0BR	LOC100287971	SNP	Silent	12	11035390	C	T	32	42
BRCA	TCGA-BH-A0BR	TMEM132D	SNP	Missense_Mutation	12	129566471	C	T	29	84
BRCA	TCGA-BH-A0BR	LOC100289071	SNP	Missense_Mutation	12	49524952	C	T	31	45
BRCA	TCGA-BH-A0BR	DUSP6	SNP	Missense_Mutation	12	89745744	C	T	31	87
BRCA	TCGA-BH-A0BR	EEA1	SNP	Missense_Mutation	12	93205078	C	T	31	97
BRCA	TCGA-BH-A0BR	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-BH-A0BR	CTAGE5	SNP	Missense_Mutation	14	39777695	C	T	29	86
BRCA	TCGA-BH-A0BR	LTBP2	SNP	Missense_Mutation	14	75017969	C	T	23	70
BRCA	TCGA-BH-A0BR	TSHR	SNP	Silent	14	81610007	C	T	29	51
BRCA	TCGA-BH-A0BR	FAM174B	SNP	Missense_Mutation	15	93198621	G	A	44	63
BRCA	TCGA-BH-A0BR	GRB7	SNP	Missense_Mutation	17	37898827	G	A	37	61
BRCA	TCGA-BH-A0BR	WIPI1	SNP	Missense_Mutation	17	66430737	C	T	29	97
BRCA	TCGA-BH-A0BR	TP53	SNP	Missense_Mutation	17	7577118	C	A	17	50
BRCA	TCGA-BH-A0BR	EEF2	SNP	Missense_Mutation	19	3982347	C	T	31	87
BRCA	TCGA-BH-A0BR	XIRP2	SNP	Missense_Mutation	2	168099578	C	T	29	89
BRCA	TCGA-BH-A0BR	SPHKAP	SNP	Silent	2	228884721	T	C	55	50
BRCA	TCGA-BH-A0BR	RASGRP3	SNP	Silent	2	33749576	C	G	29	58
BRCA	TCGA-BH-A0BR	PUS10	SNP	Missense_Mutation	2	61172191	C	G	21	62
BRCA	TCGA-BH-A0BR	JAG1	SNP	Silent	20	10627609	G	A	45	89
BRCA	TCGA-BH-A0BR	CHD6	SNP	Missense_Mutation	20	40179966	T	G	64	72
BRCA	TCGA-BH-A0BR	RBPJL	SNP	Missense_Mutation	20	43942234	C	T	19	71
BRCA	TCGA-BH-A0BR	MCCC1	SNP	Missense_Mutation	3	182788790	G	A	39	85
BRCA	TCGA-BH-A0BR	HRG	SNP	Missense_Mutation	3	186395388	G	A	39	63
BRCA	TCGA-BH-A0BR	SGOL1	SNP	Missense_Mutation	3	20216373	G	A	46	53
BRCA	TCGA-BH-A0BR	UCP1	SNP	Silent	4	141484632	C	T	31	47
BRCA	TCGA-BH-A0BR	C4orf40	SNP	Nonsense_Mutation	4	71024261	C	T	29	46
BRCA	TCGA-BH-A0BR	RNF14	DEL	Frame_Shift_Del	5	141362978	A	-	5	64
BRCA	TCGA-BH-A0BR	FAM114A2	SNP	Missense_Mutation	5	153372571	C	T	29	68
BRCA	TCGA-BH-A0BR	ANKRD55	SNP	Missense_Mutation	5	55407411	G	A	37	52
BRCA	TCGA-BH-A0BR	HDAC2	SNP	Missense_Mutation	6	114274557	C	T	29	100
BRCA	TCGA-BH-A0BR	TRDN	SNP	Missense_Mutation	6	123869608	T	C	57	58
BRCA	TCGA-BH-A0BR	ENPP1	SNP	Missense_Mutation	6	132207790	C	T	26	71
BRCA	TCGA-BH-A0BR	TMEM151B	SNP	Missense_Mutation	6	44243324	C	T	27	99
BRCA	TCGA-BH-A0BR	CTTNBP2	SNP	Missense_Mutation	7	117420559	T	C	52	66
BRCA	TCGA-BH-A0BR	POLD2	SNP	Missense_Mutation	7	44161448	C	A	26	95
BRCA	TCGA-BH-A0BR	SAMD9	SNP	Missense_Mutation	7	92734890	C	T	19	60
BRCA	TCGA-BH-A0BR	RNF20	SNP	Silent	9	104302598	A	C	10	49
BRCA	TCGA-BH-A0BR	FSD1L	SNP	Missense_Mutation	9	108226577	A	T	16	56
BRCA	TCGA-BH-A0BR	GNE	SNP	Missense_Mutation	9	36217505	T	C	49	56
BRCA	TCGA-BH-A0BR	PTPRD	SNP	Missense_Mutation	9	8518366	G	A	40	99
BRCA	TCGA-BH-A0BR	SPTLC1	SNP	Missense_Mutation	9	94817703	C	A	17	96
BRCA	TCGA-BH-A0BS	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-BH-A0BS	PPP1CC	SNP	Silent	12	111160057	A	G	8	56
BRCA	TCGA-BH-A0BS	RNF6	SNP	Missense_Mutation	13	26793710	T	C	54	73
BRCA	TCGA-BH-A0BS	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-BH-A0BS	SERPINA5	SNP	Missense_Mutation	14	95058404	A	T	1	57
BRCA	TCGA-BH-A0BS	PAK6	SNP	Silent	15	40557142	C	T	23	29
BRCA	TCGA-BH-A0BS	RAB5C	SNP	Silent	17	40280336	G	A	45	55
BRCA	TCGA-BH-A0BS	FBXW9	SNP	Missense_Mutation	19	12802058	C	T	19	71
BRCA	TCGA-BH-A0BS	CKAP2L	SNP	Missense_Mutation	2	113509932	T	G	62	76
BRCA	TCGA-BH-A0BS	RBMXL3	SNP	Missense_Mutation	23	114426765	C	T	26	53
BRCA	TCGA-BH-A0BS	CD40LG	SNP	Missense_Mutation	23	135732438	G	A	35	51
BRCA	TCGA-BH-A0BS	TMEM27	SNP	Missense_Mutation	23	15682471	C	T	22	81
BRCA	TCGA-BH-A0BS	PDCD6IP	DEL	Frame_Shift_Del	3	33896710	AT	-	12	92
BRCA	TCGA-BH-A0BS	SCAP	SNP	Missense_Mutation	3	47455768	G	A	35	85
BRCA	TCGA-BH-A0BS	ENSG00000213701	SNP	Missense_Mutation	5	96392364	C	T	28	66
BRCA	TCGA-BH-A0BS	TFAP2A	SNP	Missense_Mutation	6	10398931	A	G	8	93
BRCA	TCGA-BH-A0BS	RTN4IP1	SNP	Silent	6	107070840	A	G	2	44
BRCA	TCGA-BH-A0BS	LFNG	SNP	Silent	7	2566514	C	T	30	53
BRCA	TCGA-BH-A0BT	PPP1R12B	SNP	Silent	1	202318211	C	T	32	78
BRCA	TCGA-BH-A0BT	SLC30A10	SNP	Missense_Mutation	1	220089131	G	A	38	57
BRCA	TCGA-BH-A0BT	RYR2	SNP	Missense_Mutation	1	237656376	C	A	18	63
BRCA	TCGA-BH-A0BT	CYP17A1	SNP	Missense_Mutation	10	104590523	G	T	33	64
BRCA	TCGA-BH-A0BT	SH3PXD2A	SNP	Missense_Mutation	10	105362895	T	C	51	50
BRCA	TCGA-BH-A0BT	FGFR2	SNP	Silent	10	123239386	G	A	46	58
BRCA	TCGA-BH-A0BT	FAM175B	SNP	Nonsense_Mutation	10	126523295	C	T	29	94
BRCA	TCGA-BH-A0BT	FAM21C	SNP	Silent	10	46282632	T	C	59	52
BRCA	TCGA-BH-A0BT	SLC17A6	SNP	Missense_Mutation	11	22360147	C	T	29	96
BRCA	TCGA-BH-A0BT	ATHL1	SNP	Missense_Mutation	11	289924	T	A	62	58
BRCA	TCGA-BH-A0BT	PLCB3	SNP	Missense_Mutation	11	64022269	G	A	39	68
BRCA	TCGA-BH-A0BT	ANKRD13D	SNP	Silent	11	67057824	C	T	23	0
BRCA	TCGA-BH-A0BT	TMEM80	SNP	Splice_site	11	700143	T	C	54	59
BRCA	TCGA-BH-A0BT	NAV3	SNP	Missense_Mutation	12	78388624	T	C	52	90
BRCA	TCGA-BH-A0BT	SYT16	SNP	Missense_Mutation	14	62547865	G	A	38	100
BRCA	TCGA-BH-A0BT	SNX1	SNP	Missense_Mutation	15	64428587	G	A	37	79
BRCA	TCGA-BH-A0BT	C15orf39	SNP	Missense_Mutation	15	75501096	C	T	27	76
BRCA	TCGA-BH-A0BT	ABHD2	SNP	Missense_Mutation	15	89698616	T	A	50	93
BRCA	TCGA-BH-A0BT	GPR142	SNP	Missense_Mutation	17	72368642	A	G	12	60
BRCA	TCGA-BH-A0BT	TP53	SNP	Missense_Mutation	17	7578458	G	C	39	63
BRCA	TCGA-BH-A0BT	SOCS6	SNP	Missense_Mutation	18	67992682	C	T	27	48
BRCA	TCGA-BH-A0BT	C19orf38	SNP	Silent	19	10973880	C	G	23	39
BRCA	TCGA-BH-A0BT	NDUFS7	DEL	Frame_Shift_Del	19	1387829	C	-	30	45
BRCA	TCGA-BH-A0BT	CCDC164	SNP	Silent	2	26671656	C	T	30	28
BRCA	TCGA-BH-A0BT	SEMA4F	SNP	Missense_Mutation	2	74907173	C	T	22	64
BRCA	TCGA-BH-A0BT	NOX1	SNP	Missense_Mutation	23	100103700	A	C	6	69
BRCA	TCGA-BH-A0BT	PPEF1	SNP	Missense_Mutation	23	18824537	C	T	32	94
BRCA	TCGA-BH-A0BT	SHROOM4	SNP	Missense_Mutation	23	50350796	G	A	37	58
BRCA	TCGA-BH-A0BT	POPDC2	SNP	Silent	3	119378920	C	T	25	76
BRCA	TCGA-BH-A0BT	PIK3CA	SNP	Missense_Mutation	3	178922328	C	G	22	80
BRCA	TCGA-BH-A0BT	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0BT	MANF	SNP	Missense_Mutation	3	51423726	T	C	49	61
BRCA	TCGA-BH-A0BT	WHSC1	SNP	Missense_Mutation	4	1980493	G	A	39	99
BRCA	TCGA-BH-A0BT	PCDHB5	SNP	Silent	5	140515898	C	T	19	46
BRCA	TCGA-BH-A0BT	FAT2	SNP	Missense_Mutation	5	150948446	G	A	38	50
BRCA	TCGA-BH-A0BT	NEDD9	SNP	Missense_Mutation	6	11193886	C	T	31	80
BRCA	TCGA-BH-A0BT	PLXNA4	SNP	Missense_Mutation	7	131870086	G	A	38	67
BRCA	TCGA-BH-A0BV	INTS7	SNP	Missense_Mutation	1	212148582	C	T	30	89
BRCA	TCGA-BH-A0BV	THEMIS2	SNP	Missense_Mutation	1	28211957	A	T	12	52
BRCA	TCGA-BH-A0BV	SH2D4B	SNP	Missense_Mutation	10	82369254	C	T	24	84
BRCA	TCGA-BH-A0BV	PSMD13	SNP	Silent	11	244466	G	A	33	52
BRCA	TCGA-BH-A0BV	FOLH1	SNP	Silent	11	49175784	T	C	51	51
BRCA	TCGA-BH-A0BV	PPHLN1	SNP	Missense_Mutation	12	42835228	A	C	4	78
BRCA	TCGA-BH-A0BV	UBL3	SNP	Missense_Mutation	13	30351391	G	A	38	81
BRCA	TCGA-BH-A0BV	OR4M1	SNP	Silent	14	20248544	G	A	43	54
BRCA	TCGA-BH-A0BV	CALM1	SNP	Silent	14	90870228	C	T	23	36
BRCA	TCGA-BH-A0BV	COX10	INS	Frame_Shift_Ins	17	14110164	-	T	36	67
BRCA	TCGA-BH-A0BV	EFCAB13	SNP	Splice_site	17	45405748	A	T	7	67
BRCA	TCGA-BH-A0BV	NLRP1	SNP	Missense_Mutation	17	5462379	G	A	44	78
BRCA	TCGA-BH-A0BV	CD300A	SNP	Missense_Mutation	17	72469816	T	C	52	51
BRCA	TCGA-BH-A0BV	GSK3A	SNP	Missense_Mutation	19	42738787	G	A	41	82
BRCA	TCGA-BH-A0BV	ABCB11	SNP	Nonsense_Mutation	2	169869945	G	A	47	62
BRCA	TCGA-BH-A0BV	HEPH	SNP	Missense_Mutation	23	65418840	G	A	45	53
BRCA	TCGA-BH-A0BV	SEC13	SNP	Missense_Mutation	3	10354287	C	T	31	93
BRCA	TCGA-BH-A0BV	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-BH-A0BV	NKIRAS1	SNP	Missense_Mutation	3	23934723	C	G	30	98
BRCA	TCGA-BH-A0BV	SNX25	SNP	Missense_Mutation	4	186188284	G	A	45	95
BRCA	TCGA-BH-A0BV	ARL10	SNP	Silent	5	175798850	G	A	34	32
BRCA	TCGA-BH-A0BV	HIST1H2BC	SNP	Missense_Mutation	6	26123793	C	T	30	100
BRCA	TCGA-BH-A0BV	ADCYAP1R1	SNP	Silent	7	31104525	C	T	28	54
BRCA	TCGA-BH-A0BV	RP1L1	SNP	Missense_Mutation	8	10465798	C	A	18	43
BRCA	TCGA-BH-A0BV	CSMD1	SNP	Missense_Mutation	8	2975975	T	C	59	90
BRCA	TCGA-BH-A0BV	ZFHX4	SNP	Missense_Mutation	8	77766283	G	A	38	40
BRCA	TCGA-BH-A0BW	PPM1J	SNP	Silent	1	113253093	A	G	8	56
BRCA	TCGA-BH-A0BW	BCL9	DEL	Frame_Shift_Del	1	147092549	TG	-	55	92
BRCA	TCGA-BH-A0BW	CRTC2	SNP	Silent	1	153923850	C	T	25	71
BRCA	TCGA-BH-A0BW	GORAB	SNP	Silent	1	170521402	A	T	7	52
BRCA	TCGA-BH-A0BW	PPFIA4	SNP	Missense_Mutation	1	203030799	G	T	47	100
BRCA	TCGA-BH-A0BW	FAM177B	SNP	Missense_Mutation	1	222920385	G	A	37	62
BRCA	TCGA-BH-A0BW	OR2L13	SNP	Silent	1	248263169	T	C	49	45
BRCA	TCGA-BH-A0BW	CSMD2	SNP	Silent	1	34276437	G	T	42	49
BRCA	TCGA-BH-A0BW	EIF2C3	DEL	Frame_Shift_Del	1	36432633	GAAGT	-	33	63
BRCA	TCGA-BH-A0BW	TRPC6	SNP	Silent	11	101374902	C	T	19	51
BRCA	TCGA-BH-A0BW	LGALS12	SNP	Missense_Mutation	11	63276064	G	A	46	56
BRCA	TCGA-BH-A0BW	DDX55	SNP	Missense_Mutation	12	124103295	G	C	33	100
BRCA	TCGA-BH-A0BW	ACRBP	SNP	Nonsense_Mutation	12	6753326	G	T	36	70
BRCA	TCGA-BH-A0BW	ZNF384	SNP	Silent	12	6788134	C	T	19	47
BRCA	TCGA-BH-A0BW	WNK1	SNP	Missense_Mutation	12	862832	C	G	30	63
BRCA	TCGA-BH-A0BW	ATP11A	SNP	Missense_Mutation	13	113512489	C	A	26	98
BRCA	TCGA-BH-A0BW	RB1	INS	Frame_Shift_Ins	13	48881488	-	AG	29	74
BRCA	TCGA-BH-A0BW	BAZ1A	SNP	Nonsense_Mutation	14	35245193	A	T	5	88
BRCA	TCGA-BH-A0BW	DUOX1	SNP	Missense_Mutation	15	45428084	C	G	22	92
BRCA	TCGA-BH-A0BW	HSP90AB4P	SNP	Missense_Mutation	15	58983416	A	T	5	62
BRCA	TCGA-BH-A0BW	BAIAP3	SNP	Missense_Mutation	16	1394620	C	T	26	49
BRCA	TCGA-BH-A0BW	DNASE1L2	SNP	Splice_Site	16	2287303	G	A	44	61
BRCA	TCGA-BH-A0BW	DNAH9	SNP	Missense_Mutation	17	11701070	G	C	36	70
BRCA	TCGA-BH-A0BW	SARM1	DEL	Splice_site	17	26723044	A	-	5	89
BRCA	TCGA-BH-A0BW	ARHGAP23	SNP	Missense_Mutation	17	36623524	G	T	42	59
BRCA	TCGA-BH-A0BW	BTBD17	SNP	Silent	17	72357932	A	C	7	45
BRCA	TCGA-BH-A0BW	LOC100287042	DEL	In_Frame_Del	17	73268740	GGA	-	43	55
BRCA	TCGA-BH-A0BW	QRICH2	SNP	Missense_Mutation	17	74289101	A	C	4	52
BRCA	TCGA-BH-A0BW	TP53	SNP	Splice_site	17	7579312	C	G	23	57
BRCA	TCGA-BH-A0BW	SIRT7	SNP	Missense_Mutation	17	79872286	C	A	30	97
BRCA	TCGA-BH-A0BW	ENSG00000173213	DEL	Frame_Shift_Del	18	48227	TG	-	51	52
BRCA	TCGA-BH-A0BW	LAMA1	SNP	Missense_Mutation	18	7049147	G	A	40	100
BRCA	TCGA-BH-A0BW	ABCA7	SNP	Splice_site	19	1041509	G	A	44	41
BRCA	TCGA-BH-A0BW	DPY19L3	SNP	Missense_Mutation	19	32928151	G	A	42	71
BRCA	TCGA-BH-A0BW	GPR42	SNP	Missense_Mutation	19	35862464	T	C	55	84
BRCA	TCGA-BH-A0BW	LGALS4	SNP	Missense_Mutation	19	39299504	C	A	24	64
BRCA	TCGA-BH-A0BW	ZNF780B	SNP	Missense_Mutation	19	40541342	C	T	17	79
BRCA	TCGA-BH-A0BW	PEG3	SNP	Missense_Mutation	19	57335971	G	T	47	57
BRCA	TCGA-BH-A0BW	TPO	SNP	Missense_Mutation	2	1426879	G	A	38	59
BRCA	TCGA-BH-A0BW	PXDN	SNP	Missense_Mutation	2	1667407	C	A	18	62
BRCA	TCGA-BH-A0BW	TTN	SNP	Missense_Mutation	2	179498292	T	A	50	94
BRCA	TCGA-BH-A0BW	NT5C1B-RDH14	SNP	Missense_Mutation	2	18765450	T	A	64	58
BRCA	TCGA-BH-A0BW	PMS1	SNP	Missense_Mutation	2	190718672	G	A	37	76
BRCA	TCGA-BH-A0BW	ASPRV1	DEL	In_Frame_Del	2	70188292	CCCCAGGGA	-	26	51
BRCA	TCGA-BH-A0BW	SEC23B	SNP	Missense_Mutation	20	18507096	G	C	41	98
BRCA	TCGA-BH-A0BW	MICAL3	SNP	Silent	22	18354628	C	T	23	34
BRCA	TCGA-BH-A0BW	CACNA1I	SNP	Missense_Mutation	22	40066845	C	G	17	51
BRCA	TCGA-BH-A0BW	PNPLA3	DEL	Frame_Shift_Del	22	44340631	ACAGG	-	6	49
BRCA	TCGA-BH-A0BW	PNPLA3	DEL	Frame_Shift_Del	22	44340638	TT	-	60	49
BRCA	TCGA-BH-A0BW	PNPLA3	INS	Frame_Shift_Ins	22	44340640	-	A	29	38
BRCA	TCGA-BH-A0BW	TSC22D3	SNP	Missense_Mutation	23	107018552	C	G	28	58
BRCA	TCGA-BH-A0BW	CAPN6	SNP	Missense_Mutation	23	110496378	G	A	45	87
BRCA	TCGA-BH-A0BW	DOCK11	SNP	Missense_Mutation	23	117782984	C	T	31	96
BRCA	TCGA-BH-A0BW	NHS	SNP	Missense_Mutation	23	17750565	C	T	30	97
BRCA	TCGA-BH-A0BW	RPS6KA3	SNP	Missense_Mutation	23	20195139	G	C	45	86
BRCA	TCGA-BH-A0BW	MED12	DEL	Frame_Shift_Del	23	70356831	AGGCA	-	7	52
BRCA	TCGA-BH-A0BW	NLGN3	SNP	Silent	23	70386913	T	G	55	50
BRCA	TCGA-BH-A0BW	POLQ	SNP	Silent	3	121207554	A	G	16	34
BRCA	TCGA-BH-A0BW	DNAH12	SNP	Missense_Mutation	3	57401248	A	G	14	92
BRCA	TCGA-BH-A0BW	TBCK	SNP	Missense_Mutation	4	107230071	G	A	42	100
BRCA	TCGA-BH-A0BW	TTC29	SNP	Missense_Mutation	4	147741361	T	A	52	52
BRCA	TCGA-BH-A0BW	ODZ3	SNP	Missense_Mutation	4	183696086	G	A	34	69
BRCA	TCGA-BH-A0BW	SLC34A2	DEL	In_Frame_Del	4	25678170	GTGCTGCCGCGC	-	48	49
BRCA	TCGA-BH-A0BW	SLC34A2	SNP	Missense_Mutation	4	25678181	C	T	27	50
BRCA	TCGA-BH-A0BW	ERVMER34-1	SNP	Nonsense_Mutation	4	53610742	G	A	38	47
BRCA	TCGA-BH-A0BW	FRAS1	SNP	Nonsense_Mutation	4	79236807	G	T	45	58
BRCA	TCGA-BH-A0BW	WDFY3	SNP	Silent	4	85748077	C	G	29	68
BRCA	TCGA-BH-A0BW	MCC	DEL	In_Frame_Del	5	112824043	GCC	-	46	56
BRCA	TCGA-BH-A0BW	GRPEL2	SNP	Missense_Mutation	5	148730786	G	A	47	88
BRCA	TCGA-BH-A0BW	MSH3	SNP	Missense_Mutation	5	80064756	T	A	52	62
BRCA	TCGA-BH-A0BW	ALDH8A1	DEL	Frame_Shift_Del	6	135263624	AGGCTGGAGGAAGCGA	-	7	70
BRCA	TCGA-BH-A0BW	JARID2	SNP	Missense_Mutation	6	15496730	G	A	39	69
BRCA	TCGA-BH-A0BW	APOBEC2	SNP	Silent	6	41029073	G	T	42	53
BRCA	TCGA-BH-A0BW	CUL7	SNP	Missense_Mutation	6	43016268	T	A	55	47
BRCA	TCGA-BH-A0BW	POLR1C	SNP	Nonsense_Mutation	6	43487161	C	T	19	53
BRCA	TCGA-BH-A0BW	PKHD1	SNP	Missense_Mutation	6	51484286	T	A	62	56
BRCA	TCGA-BH-A0BW	MUC12	SNP	Silent	7	100634705	T	A	56	50
BRCA	TCGA-BH-A0BW	CLDN15	SNP	Missense_Mutation	7	100876136	C	G	31	52
BRCA	TCGA-BH-A0BW	AGBL3	SNP	Missense_Mutation	7	134800290	A	G	15	61
BRCA	TCGA-BH-A0BW	MLL3	SNP	Missense_Mutation	7	151871273	C	T	18	100
BRCA	TCGA-BH-A0BW	AMPH	SNP	Missense_Mutation	7	38424430	G	A	40	80
BRCA	TCGA-BH-A0BW	TRPS1	SNP	Missense_Mutation	8	116430602	C	G	23	100
BRCA	TCGA-BH-A0BW	ENPP2	SNP	Missense_Mutation	8	120569768	T	C	54	93
BRCA	TCGA-BH-A0BW	AGPAT5	DEL	Frame_Shift_Del	8	6590094	TATG	-	53	87
BRCA	TCGA-BH-A0BW	OR1J1	SNP	Missense_Mutation	9	125239431	A	G	15	62
BRCA	TCGA-BH-A0BW	SPTAN1	SNP	Missense_Mutation	9	131378115	A	G	12	91
BRCA	TCGA-BH-A0BW	CACNA1B	SNP	Missense_Mutation	9	141012420	A	G	5	76
BRCA	TCGA-BH-A0BW	FAM75D1	SNP	Missense_Mutation	9	84608347	C	T	22	55
BRCA	TCGA-BH-A0BZ	PALMD	SNP	Missense_Mutation	1	100154988	A	T	10	68
BRCA	TCGA-BH-A0BZ	MAN1A2	SNP	Nonsense_Mutation	1	118003225	C	G	20	73
BRCA	TCGA-BH-A0BZ	SPAG17	SNP	Missense_Mutation	1	118550690	C	A	25	71
BRCA	TCGA-BH-A0BZ	FCGR1A	SNP	Missense_Mutation	1	149755809	C	G	17	51
BRCA	TCGA-BH-A0BZ	FLG2	SNP	Missense_Mutation	1	152328814	C	A	22	65
BRCA	TCGA-BH-A0BZ	CDK11B	SNP	Splice_Site	1	1573246	C	A	32	93
BRCA	TCGA-BH-A0BZ	UCK2	SNP	Silent	1	165865490	C	T	32	82
BRCA	TCGA-BH-A0BZ	BLZF1	SNP	Missense_Mutation	1	169351347	C	G	20	84
BRCA	TCGA-BH-A0BZ	SELP	SNP	Missense_Mutation	1	169581541	C	T	17	72
BRCA	TCGA-BH-A0BZ	SELL	SNP	Missense_Mutation	1	169672428	C	G	30	86
BRCA	TCGA-BH-A0BZ	TNR	SNP	Silent	1	175331827	G	A	38	51
BRCA	TCGA-BH-A0BZ	CEP350	SNP	Missense_Mutation	1	180000592	G	C	33	87
BRCA	TCGA-BH-A0BZ	KIAA1614	SNP	Missense_Mutation	1	180885366	C	G	17	76
BRCA	TCGA-BH-A0BZ	HMCN1	SNP	Missense_Mutation	1	186014823	C	T	23	83
BRCA	TCGA-BH-A0BZ	ZC3H11A	SNP	Missense_Mutation	1	203821334	C	T	29	83
BRCA	TCGA-BH-A0BZ	RAB3GAP2	SNP	Splice_site	1	220345979	C	T	24	93
BRCA	TCGA-BH-A0BZ	WNT3A	SNP	Silent	1	228246812	C	T	19	69
BRCA	TCGA-BH-A0BZ	TRIM67	SNP	Splice_site	1	231334915	G	A	35	100
BRCA	TCGA-BH-A0BZ	RYR2	SNP	Missense_Mutation	1	237693803	C	A	18	78
BRCA	TCGA-BH-A0BZ	OR2L2	SNP	Missense_Mutation	1	248201729	C	A	32	86
BRCA	TCGA-BH-A0BZ	CSMD2	SNP	Missense_Mutation	1	33990553	C	T	26	68
BRCA	TCGA-BH-A0BZ	ZMYM6	SNP	Missense_Mutation	1	35453751	G	C	33	53
BRCA	TCGA-BH-A0BZ	GNL2	SNP	Missense_Mutation	1	38040001	C	A	22	58
BRCA	TCGA-BH-A0BZ	BRDT	SNP	Missense_Mutation	1	92446610	C	G	24	100
BRCA	TCGA-BH-A0BZ	TMEM201	SNP	Nonsense_Mutation	1	9656053	C	G	17	73
BRCA	TCGA-BH-A0BZ	XPNPEP1	SNP	Missense_Mutation	10	111646073	C	T	32	73
BRCA	TCGA-BH-A0BZ	ST8SIA6	DEL	Frame_Shift_Del	10	17432557	ATGCCAT	-	4	59
BRCA	TCGA-BH-A0BZ	YME1L1	SNP	Missense_Mutation	10	27434428	T	G	64	58
BRCA	TCGA-BH-A0BZ	ZNF438	SNP	Missense_Mutation	10	31137957	C	A	32	31
BRCA	TCGA-BH-A0BZ	CREM	SNP	Missense_Mutation	10	35500663	C	G	21	88
BRCA	TCGA-BH-A0BZ	ERCC6	SNP	Missense_Mutation	10	50681546	G	A	42	100
BRCA	TCGA-BH-A0BZ	MBL2	SNP	Missense_Mutation	10	54528028	T	G	59	42
BRCA	TCGA-BH-A0BZ	ECD	SNP	Missense_Mutation	10	74923668	T	G	50	50
BRCA	TCGA-BH-A0BZ	KIAA0913	SNP	Silent	10	75561184	G	A	36	89
BRCA	TCGA-BH-A0BZ	LRIT2	SNP	Missense_Mutation	10	85982013	G	T	35	60
BRCA	TCGA-BH-A0BZ	LIPA	SNP	Missense_Mutation	10	90986702	G	A	36	92
BRCA	TCGA-BH-A0BZ	KIF20B	INS	Frame_Shift_Ins	10	91498778	-	A	41	65
BRCA	TCGA-BH-A0BZ	CYP2C9	SNP	Missense_Mutation	10	96748684	C	G	24	48
BRCA	TCGA-BH-A0BZ	ZC3H12C	SNP	Missense_Mutation	11	110034079	A	C	2	51
BRCA	TCGA-BH-A0BZ	SIDT2	SNP	Silent	11	117054809	G	C	42	55
BRCA	TCGA-BH-A0BZ	GRAMD1B	SNP	Splice_Site	11	123476187	G	A	44	90
BRCA	TCGA-BH-A0BZ	BDNF	SNP	Missense_Mutation	11	27695705	C	G	17	54
BRCA	TCGA-BH-A0BZ	OR5L1	SNP	Missense_Mutation	11	55579684	A	T	16	52
BRCA	TCGA-BH-A0BZ	OR5AS1	SNP	Missense_Mutation	11	55798071	G	C	48	99
BRCA	TCGA-BH-A0BZ	OR9G4	SNP	Missense_Mutation	11	56510423	C	G	28	57
BRCA	TCGA-BH-A0BZ	CD5	DEL	Frame_Shift_Del	11	60890420	GCAA	-	42	49
BRCA	TCGA-BH-A0BZ	STIP1	SNP	Missense_Mutation	11	63960739	C	G	24	44
BRCA	TCGA-BH-A0BZ	TPP1	SNP	Missense_Mutation	11	6638925	C	A	21	54
BRCA	TCGA-BH-A0BZ	PITPNM1	SNP	Silent	11	67270037	C	T	25	58
BRCA	TCGA-BH-A0BZ	ARRB1	SNP	Missense_Mutation	11	74995294	G	A	33	67
BRCA	TCGA-BH-A0BZ	MYO7A	SNP	Missense_Mutation	11	76918405	G	C	36	73
BRCA	TCGA-BH-A0BZ	KCTD21	SNP	Nonsense_Mutation	11	77885303	C	A	30	81
BRCA	TCGA-BH-A0BZ	UTP20	SNP	Silent	12	101699822	C	T	17	52
BRCA	TCGA-BH-A0BZ	PAH	SNP	Missense_Mutation	12	103234267	G	T	43	95
BRCA	TCGA-BH-A0BZ	ALDH1L2	SNP	Missense_Mutation	12	105456710	C	A	19	64
BRCA	TCGA-BH-A0BZ	PRDM4	SNP	Missense_Mutation	12	108133303	C	G	17	60
BRCA	TCGA-BH-A0BZ	TCHP	SNP	Missense_Mutation	12	110352416	A	C	7	51
BRCA	TCGA-BH-A0BZ	MLL2	SNP	Silent	12	49424516	G	T	45	75
BRCA	TCGA-BH-A0BZ	KRT82	DEL	Frame_Shift_Del	12	52800015	CT	-	20	66
BRCA	TCGA-BH-A0BZ	ZC3H10	SNP	Missense_Mutation	12	56515095	G	T	39	95
BRCA	TCGA-BH-A0BZ	ATP5B	SNP	Missense_Mutation	12	57036286	C	G	30	100
BRCA	TCGA-BH-A0BZ	SRGAP1	SNP	Missense_Mutation	12	64456793	G	T	33	100
BRCA	TCGA-BH-A0BZ	LPAR5	SNP	Silent	12	6730247	C	T	21	50
BRCA	TCGA-BH-A0BZ	SGCG	SNP	Missense_Mutation	13	23808841	A	C	6	52
BRCA	TCGA-BH-A0BZ	CPB2	SNP	Missense_Mutation	13	46627925	G	C	41	96
BRCA	TCGA-BH-A0BZ	PCDH17	SNP	Missense_Mutation	13	58240645	A	C	7	90
BRCA	TCGA-BH-A0BZ	PCDH17	SNP	Missense_Mutation	13	58298937	A	C	10	91
BRCA	TCGA-BH-A0BZ	TEP1	SNP	Missense_Mutation	14	20837883	T	A	54	72
BRCA	TCGA-BH-A0BZ	OR6S1	SNP	Missense_Mutation	14	21109448	G	T	43	55
BRCA	TCGA-BH-A0BZ	TM9SF1	SNP	Missense_Mutation	14	24658635	G	C	35	79
BRCA	TCGA-BH-A0BZ	NYNRIN	SNP	Missense_Mutation	14	24886547	G	C	43	78
BRCA	TCGA-BH-A0BZ	SAMD4A	SNP	Missense_Mutation	14	55231251	T	C	52	66
BRCA	TCGA-BH-A0BZ	PRKCH	SNP	Missense_Mutation	14	62014470	A	G	5	80
BRCA	TCGA-BH-A0BZ	NRXN3	SNP	Missense_Mutation	14	79175993	G	T	33	100
BRCA	TCGA-BH-A0BZ	EML5	SNP	Missense_Mutation	14	89091378	G	A	42	96
BRCA	TCGA-BH-A0BZ	APBA2	SNP	Missense_Mutation	15	29397678	A	G	9	74
BRCA	TCGA-BH-A0BZ	PPIP5K1	SNP	Missense_Mutation	15	43873233	A	T	8	91
BRCA	TCGA-BH-A0BZ	SQRDL	SNP	Missense_Mutation	15	45951281	G	A	47	95
BRCA	TCGA-BH-A0BZ	MYO5C	SNP	Silent	15	52517715	G	A	37	46
BRCA	TCGA-BH-A0BZ	TLE3	SNP	Missense_Mutation	15	70346800	G	C	44	76
BRCA	TCGA-BH-A0BZ	BLM	DEL	In_Frame_Del	15	91293258	GAAAGT	-	41	60
BRCA	TCGA-BH-A0BZ	EEF2K	SNP	Missense_Mutation	16	22260122	A	C	5	89
BRCA	TCGA-BH-A0BZ	SRRM2	SNP	Missense_Mutation	16	2815562	C	G	22	69
BRCA	TCGA-BH-A0BZ	ALDOA	SNP	Missense_Mutation	16	30079970	G	C	33	97
BRCA	TCGA-BH-A0BZ	ZNF423	SNP	Silent	16	49669760	G	A	40	36
BRCA	TCGA-BH-A0BZ	CPNE2	SNP	Missense_Mutation	16	57153125	G	C	33	100
BRCA	TCGA-BH-A0BZ	CDH8	SNP	Missense_Mutation	16	61854993	T	G	62	91
BRCA	TCGA-BH-A0BZ	ZDHHC1	SNP	Missense_Mutation	16	67428930	C	G	19	49
BRCA	TCGA-BH-A0BZ	MYH1	SNP	Missense_Mutation	17	10405125	T	A	50	93
BRCA	TCGA-BH-A0BZ	COX10	SNP	Missense_Mutation	17	13980191	G	A	34	50
BRCA	TCGA-BH-A0BZ	TOM1L2	SNP	Silent	17	17786172	G	A	41	62
BRCA	TCGA-BH-A0BZ	ANKRD13B	SNP	Missense_Mutation	17	27934851	C	T	27	63
BRCA	TCGA-BH-A0BZ	GPR179	SNP	Missense_Mutation	17	36487341	A	T	7	90
BRCA	TCGA-BH-A0BZ	ZZEF1	DEL	Frame_Shift_Del	17	3920660	ACTACCTTCTCCC	-	2	40
BRCA	TCGA-BH-A0BZ	KRTAP17-1	SNP	Missense_Mutation	17	39471833	A	G	7	68
BRCA	TCGA-BH-A0BZ	ZZEF1	SNP	Splice_Site	17	3980054	C	G	24	97
BRCA	TCGA-BH-A0BZ	HAP1	SNP	Silent	17	39889034	T	C	57	64
BRCA	TCGA-BH-A0BZ	COASY	SNP	Missense_Mutation	17	40715169	G	C	34	54
BRCA	TCGA-BH-A0BZ	ABCC3	SNP	Missense_Mutation	17	48746861	G	T	44	67
BRCA	TCGA-BH-A0BZ	BZRAP1	SNP	Missense_Mutation	17	56389025	C	G	29	58
BRCA	TCGA-BH-A0BZ	CLTC	SNP	Missense_Mutation	17	57738819	C	A	30	100
BRCA	TCGA-BH-A0BZ	C17orf80	SNP	Missense_Mutation	17	71232219	A	G	14	49
BRCA	TCGA-BH-A0BZ	ST6GALNAC1	SNP	Silent	17	74639652	G	C	41	55
BRCA	TCGA-BH-A0BZ	SAT2	SNP	Missense_Mutation	17	7530899	T	A	54	70
BRCA	TCGA-BH-A0BZ	ALYREF	INS	In_Frame_Ins	17	79847099	-	CAT	42	82
BRCA	TCGA-BH-A0BZ	CEP192	SNP	Missense_Mutation	18	13087076	T	C	50	57
BRCA	TCGA-BH-A0BZ	HRH4	SNP	Missense_Mutation	18	22056805	T	C	52	88
BRCA	TCGA-BH-A0BZ	PTPRM	SNP	Splice_Site	18	8076452	G	T	36	79
BRCA	TCGA-BH-A0BZ	GIPC1	SNP	Missense_Mutation	19	14589304	C	T	18	89
BRCA	TCGA-BH-A0BZ	NWD1	SNP	Splice_site	19	16874756	G	C	43	79
BRCA	TCGA-BH-A0BZ	ATP8B3	SNP	Silent	19	1799950	G	T	33	55
BRCA	TCGA-BH-A0BZ	PDE4C	SNP	Silent	19	18322000	C	T	27	19
BRCA	TCGA-BH-A0BZ	ZNF676	SNP	Silent	19	22362986	G	T	46	47
BRCA	TCGA-BH-A0BZ	LGALS13	SNP	Missense_Mutation	19	40095264	C	G	32	56
BRCA	TCGA-BH-A0BZ	CYP2A7	SNP	Missense_Mutation	19	41383175	T	C	56	55
BRCA	TCGA-BH-A0BZ	SYMPK	SNP	Nonsense_Mutation	19	46341763	C	A	29	94
BRCA	TCGA-BH-A0BZ	FUT2	SNP	Silent	19	49206873	G	A	42	56
BRCA	TCGA-BH-A0BZ	SIGLEC10	SNP	Missense_Mutation	19	51920020	G	T	45	53
BRCA	TCGA-BH-A0BZ	ZSCAN5B	SNP	Silent	19	56704353	T	G	59	41
BRCA	TCGA-BH-A0BZ	ZNF419	SNP	Silent	19	58005131	T	C	51	46
BRCA	TCGA-BH-A0BZ	ZNF552	SNP	Nonsense_Mutation	19	58319602	T	A	54	76
BRCA	TCGA-BH-A0BZ	ZNF552	INS	Frame_Shift_Ins	19	58319607	-	GA	51	75
BRCA	TCGA-BH-A0BZ	ZNF587	SNP	Missense_Mutation	19	58352673	G	A	43	49
BRCA	TCGA-BH-A0BZ	ZNF837	SNP	Silent	19	58879905	G	A	43	54
BRCA	TCGA-BH-A0BZ	LPIN1	SNP	Missense_Mutation	2	11911547	C	T	28	63
BRCA	TCGA-BH-A0BZ	GALNT3	SNP	Missense_Mutation	2	166611534	G	A	48	69
BRCA	TCGA-BH-A0BZ	FASTKD1	SNP	Missense_Mutation	2	170394566	C	G	32	52
BRCA	TCGA-BH-A0BZ	TTN	SNP	Missense_Mutation	2	179645892	T	C	52	93
BRCA	TCGA-BH-A0BZ	COQ10B	SNP	Missense_Mutation	2	198334804	C	G	20	100
BRCA	TCGA-BH-A0BZ	APOB	SNP	Missense_Mutation	2	21230517	C	T	25	58
BRCA	TCGA-BH-A0BZ	APOB	SNP	Missense_Mutation	2	21239435	C	G	29	68
BRCA	TCGA-BH-A0BZ	SP100	SNP	Missense_Mutation	2	231331031	G	A	33	52
BRCA	TCGA-BH-A0BZ	ANKMY1	SNP	Nonsense_Mutation	2	241463462	C	A	29	72
BRCA	TCGA-BH-A0BZ	GPR113	SNP	Missense_Mutation	2	26534831	T	C	58	78
BRCA	TCGA-BH-A0BZ	KCNK3	SNP	Missense_Mutation	2	26950777	G	A	38	81
BRCA	TCGA-BH-A0BZ	CCDC121	DEL	Frame_Shift_Del	2	27851347	G	-	35	58
BRCA	TCGA-BH-A0BZ	BRE	SNP	Nonsense_Mutation	2	28521317	C	G	17	72
BRCA	TCGA-BH-A0BZ	EHD3	DEL	Frame_Shift_Del	2	31484518	GCCGGATCGA	-	42	60
BRCA	TCGA-BH-A0BZ	PRKD3	SNP	Silent	2	37501724	A	G	5	50
BRCA	TCGA-BH-A0BZ	PLEKHH2	SNP	Missense_Mutation	2	43937232	A	T	1	56
BRCA	TCGA-BH-A0BZ	PREPL	SNP	Silent	2	44559718	T	A	63	53
BRCA	TCGA-BH-A0BZ	MSH2	SNP	Missense_Mutation	2	47657032	G	A	43	65
BRCA	TCGA-BH-A0BZ	C2orf73	SNP	Missense_Mutation	2	54562103	C	A	25	52
BRCA	TCGA-BH-A0BZ	MPHOSPH10	SNP	Missense_Mutation	2	71360505	A	C	3	49
BRCA	TCGA-BH-A0BZ	TMEM131	SNP	Nonsense_Mutation	2	98409038	C	A	29	76
BRCA	TCGA-BH-A0BZ	CNGA3	SNP	Missense_Mutation	2	98994171	G	C	33	54
BRCA	TCGA-BH-A0BZ	SDCBP2	SNP	Missense_Mutation	20	1300251	G	C	42	52
BRCA	TCGA-BH-A0BZ	SLC4A11	SNP	Missense_Mutation	20	3208935	G	A	43	100
BRCA	TCGA-BH-A0BZ	RALY	SNP	Missense_Mutation	20	32663708	C	A	26	77
BRCA	TCGA-BH-A0BZ	NCOA6	SNP	Missense_Mutation	20	33369936	A	C	1	69
BRCA	TCGA-BH-A0BZ	NFS1	SNP	Missense_Mutation	20	34278343	C	A	29	67
BRCA	TCGA-BH-A0BZ	C20orf152	SNP	Nonsense_Mutation	20	34618474	T	G	50	52
BRCA	TCGA-BH-A0BZ	PLTP	SNP	Splice_site	20	44527701	C	T	30	86
BRCA	TCGA-BH-A0BZ	KCNQ2	SNP	Missense_Mutation	20	62070997	G	T	38	72
BRCA	TCGA-BH-A0BZ	APP	DEL	Splice_Site	21	27347382	C	-	18	93
BRCA	TCGA-BH-A0BZ	KRTAP10-4	SNP	Missense_Mutation	21	45993856	C	T	22	52
BRCA	TCGA-BH-A0BZ	EMID1	SNP	Missense_Mutation	22	29611547	G	T	44	81
BRCA	TCGA-BH-A0BZ	MBTPS2	SNP	Missense_Mutation	23	21886678	G	C	43	88
BRCA	TCGA-BH-A0BZ	DMD	SNP	Missense_Mutation	23	32503137	C	A	30	67
BRCA	TCGA-BH-A0BZ	HDAC6	SNP	Missense_Mutation	23	48661392	G	A	43	74
BRCA	TCGA-BH-A0BZ	HUWE1	SNP	Missense_Mutation	23	53617397	A	T	16	55
BRCA	TCGA-BH-A0BZ	NLGN3	SNP	Missense_Mutation	23	70384048	G	C	33	63
BRCA	TCGA-BH-A0BZ	ITM2A	SNP	Nonsense_Mutation	23	78616643	C	T	30	52
BRCA	TCGA-BH-A0BZ	HEG1	SNP	Nonsense_Mutation	3	124731512	G	A	45	59
BRCA	TCGA-BH-A0BZ	PIK3R4	SNP	Missense_Mutation	3	130463374	C	G	32	100
BRCA	TCGA-BH-A0BZ	CDV3	SNP	Nonsense_Mutation	3	133306840	C	T	21	96
BRCA	TCGA-BH-A0BZ	LEKR1	SNP	Missense_Mutation	3	156547155	G	C	33	74
BRCA	TCGA-BH-A0BZ	IL1RAP	SNP	Missense_Mutation	3	190366442	G	A	39	89
BRCA	TCGA-BH-A0BZ	ITGA9	SNP	Missense_Mutation	3	37778446	G	A	36	50
BRCA	TCGA-BH-A0BZ	ZNF445	SNP	Missense_Mutation	3	44488954	G	A	44	51
BRCA	TCGA-BH-A0BZ	FYCO1	SNP	Missense_Mutation	3	46008278	C	G	30	74
BRCA	TCGA-BH-A0BZ	LAMB2	SNP	Splice_Site	3	49166019	C	T	24	90
BRCA	TCGA-BH-A0BZ	CACNA2D2	SNP	Missense_Mutation	3	50412233	A	C	6	84
BRCA	TCGA-BH-A0BZ	ANXA5	SNP	Silent	4	122590856	G	C	43	57
BRCA	TCGA-BH-A0BZ	LSM6	SNP	Silent	4	147104112	G	A	34	63
BRCA	TCGA-BH-A0BZ	CPEB2	SNP	Silent	4	15054069	C	G	28	56
BRCA	TCGA-BH-A0BZ	TRIM2	SNP	Missense_Mutation	4	154243810	G	T	41	100
BRCA	TCGA-BH-A0BZ	WDFY3	SNP	Missense_Mutation	4	85672736	G	A	34	98
BRCA	TCGA-BH-A0BZ	SLC12A7	SNP	Silent	5	1073784	G	A	44	53
BRCA	TCGA-BH-A0BZ	KIF3A	SNP	Missense_Mutation	5	132038596	C	A	32	52
BRCA	TCGA-BH-A0BZ	FSTL4	SNP	Silent	5	132535018	C	T	17	55
BRCA	TCGA-BH-A0BZ	TGFBI	SNP	Missense_Mutation	5	135388753	C	G	30	56
BRCA	TCGA-BH-A0BZ	PCDHB3	SNP	Silent	5	140480788	T	C	57	27
BRCA	TCGA-BH-A0BZ	PCDHGB6	SNP	Missense_Mutation	5	140789181	T	G	52	91
BRCA	TCGA-BH-A0BZ	PCDHGC4	INS	In_Frame_Ins	5	140867095	-	ATG	29	74
BRCA	TCGA-BH-A0BZ	SLIT3	SNP	Missense_Mutation	5	168199824	C	T	27	100
BRCA	TCGA-BH-A0BZ	HRH2	SNP	Missense_Mutation	5	175110861	G	A	38	98
BRCA	TCGA-BH-A0BZ	DMGDH	SNP	Missense_Mutation	5	78338282	C	A	20	76
BRCA	TCGA-BH-A0BZ	SYNE1	DEL	Frame_Shift_Del	6	152651269	AAGCCAAGGGGTCAAGGTGTGGGGC	-	13	61
BRCA	TCGA-BH-A0BZ	MRPL18	SNP	Missense_Mutation	6	160212096	A	T	16	44
BRCA	TCGA-BH-A0BZ	HIST1H2BC	SNP	Missense_Mutation	6	26123825	A	G	3	91
BRCA	TCGA-BH-A0BZ	WDR46	SNP	Missense_Mutation	6	33248475	C	G	22	96
BRCA	TCGA-BH-A0BZ	KIFC1	SNP	Missense_Mutation	6	33371093	C	G	29	75
BRCA	TCGA-BH-A0BZ	UBR2	SNP	Silent	6	42652568	A	G	7	42
BRCA	TCGA-BH-A0BZ	RPS17P5	SNP	Missense_Mutation	6	50825005	A	G	2	65
BRCA	TCGA-BH-A0BZ	GSTA2	SNP	Missense_Mutation	6	52616434	G	A	36	53
BRCA	TCGA-BH-A0BZ	HCRTR2	SNP	Missense_Mutation	6	55120040	G	A	40	82
BRCA	TCGA-BH-A0BZ	PDIA4	SNP	Missense_Mutation	7	148718210	C	T	30	86
BRCA	TCGA-BH-A0BZ	SLC4A2	SNP	Missense_Mutation	7	150769218	G	C	44	47
BRCA	TCGA-BH-A0BZ	INTS1	SNP	Silent	7	1527563	C	T	23	63
BRCA	TCGA-BH-A0BZ	LSM5	SNP	Missense_Mutation	7	32528913	C	T	29	87
BRCA	TCGA-BH-A0BZ	OGDH	SNP	Missense_Mutation	7	44737330	G	T	43	100
BRCA	TCGA-BH-A0BZ	CACNA2D1	SNP	Missense_Mutation	7	81598259	A	G	4	83
BRCA	TCGA-BH-A0BZ	COL1A2	SNP	Missense_Mutation	7	94043009	C	T	21	100
BRCA	TCGA-BH-A0BZ	TG	SNP	Splice_site	8	134034236	G	A	42	66
BRCA	TCGA-BH-A0BZ	MYOM2	SNP	Missense_Mutation	8	2026951	C	G	23	49
BRCA	TCGA-BH-A0BZ	NKX3-1	SNP	Missense_Mutation	8	23538848	C	G	25	63
BRCA	TCGA-BH-A0BZ	TEX15	SNP	Missense_Mutation	8	30705392	G	T	34	44
BRCA	TCGA-BH-A0BZ	PPAPDC1B	DEL	Splice_Site	8	38123635	CCATAGCCTGAGTACTTTGCTTA	-	30	51
BRCA	TCGA-BH-A0BZ	IKBKB	SNP	Missense_Mutation	8	42171889	G	T	33	85
BRCA	TCGA-BH-A0BZ	MTFR1	SNP	Missense_Mutation	8	66619371	G	C	33	58
BRCA	TCGA-BH-A0BZ	MYBL1	SNP	Missense_Mutation	8	67484779	G	C	41	94
BRCA	TCGA-BH-A0BZ	GABBR2	SNP	Silent	9	101470750	G	A	40	53
BRCA	TCGA-BH-A0BZ	TMEM246	SNP	Missense_Mutation	9	104238305	T	C	59	56
BRCA	TCGA-BH-A0BZ	TLR4	SNP	Nonsense_Mutation	9	120475509	C	A	29	32
BRCA	TCGA-BH-A0BZ	TLR4	SNP	Missense_Mutation	9	120476776	C	A	25	57
BRCA	TCGA-BH-A0BZ	DBC1	SNP	Missense_Mutation	9	122000956	G	A	40	87
BRCA	TCGA-BH-A0BZ	SKA2L	SNP	Missense_Mutation	9	125524220	G	C	35	57
BRCA	TCGA-BH-A0BZ	IFNB1	SNP	Silent	9	21077514	G	A	33	61
BRCA	TCGA-BH-A0BZ	SIT1	SNP	Missense_Mutation	9	35650368	T	A	51	55
BRCA	TCGA-BH-A0BZ	OR13J1	SNP	Silent	9	35869718	C	T	22	58
BRCA	TCGA-BH-A0C0	LOC100289369	SNP	Missense_Mutation	1	154918042	G	A	46	52
BRCA	TCGA-BH-A0C0	UBQLN4	SNP	Missense_Mutation	1	156011319	A	G	8	86
BRCA	TCGA-BH-A0C0	RGS4	SNP	Nonsense_Mutation	1	163044344	T	A	59	51
BRCA	TCGA-BH-A0C0	POU2F1	SNP	Silent	1	167382293	C	A	22	50
BRCA	TCGA-BH-A0C0	LAMC2	SNP	Missense_Mutation	1	183177174	C	T	23	57
BRCA	TCGA-BH-A0C0	HHAT	SNP	Missense_Mutation	1	210573999	A	C	9	74
BRCA	TCGA-BH-A0C0	NSL1	SNP	Missense_Mutation	1	212911865	G	C	48	63
BRCA	TCGA-BH-A0C0	CCDC27	SNP	Missense_Mutation	1	3672038	G	A	37	41
BRCA	TCGA-BH-A0C0	GRIK3	SNP	Missense_Mutation	1	37307422	T	A	54	90
BRCA	TCGA-BH-A0C0	USP1	SNP	Missense_Mutation	1	62916175	G	T	45	64
BRCA	TCGA-BH-A0C0	GPAM	SNP	Missense_Mutation	10	113915699	G	T	35	93
BRCA	TCGA-BH-A0C0	FRMD4A	SNP	Missense_Mutation	10	13804668	C	A	19	76
BRCA	TCGA-BH-A0C0	RET	SNP	Missense_Mutation	10	43597801	C	A	30	64
BRCA	TCGA-BH-A0C0	CYP2C8	DEL	In_Frame_Del	10	96797047	TCCTGCACAAATTCGTTT	-	54	50
BRCA	TCGA-BH-A0C0	MMP8	SNP	Missense_Mutation	11	102589268	G	T	47	100
BRCA	TCGA-BH-A0C0	BCL9L	SNP	Missense_Mutation	11	118770742	G	C	43	83
BRCA	TCGA-BH-A0C0	OR8U1	SNP	Missense_Mutation	11	56143625	C	A	21	64
BRCA	TCGA-BH-A0C0	ODZ4	SNP	Missense_Mutation	11	78423693	G	T	48	86
BRCA	TCGA-BH-A0C0	NUAK1	SNP	Missense_Mutation	12	106461617	A	T	7	93
BRCA	TCGA-BH-A0C0	RASAL1	SNP	Missense_Mutation	12	113552621	C	G	30	76
BRCA	TCGA-BH-A0C0	AKAP3	SNP	Splice_Site	12	4747364	T	G	55	75
BRCA	TCGA-BH-A0C0	KCNA1	SNP	Missense_Mutation	12	5021590	C	T	27	98
BRCA	TCGA-BH-A0C0	COL4A1	SNP	Splice_Site	13	110847369	C	A	18	85
BRCA	TCGA-BH-A0C0	ALG5	SNP	Missense_Mutation	13	37569662	G	T	33	53
BRCA	TCGA-BH-A0C0	OR4N2	SNP	Missense_Mutation	14	20296167	T	A	55	73
BRCA	TCGA-BH-A0C0	ERO1L	SNP	Missense_Mutation	14	53119001	T	C	62	90
BRCA	TCGA-BH-A0C0	ITGA11	SNP	Missense_Mutation	15	68643690	A	G	4	90
BRCA	TCGA-BH-A0C0	ACSM3	SNP	Missense_Mutation	16	20788842	C	T	30	54
BRCA	TCGA-BH-A0C0	MBTPS1	SNP	Missense_Mutation	16	84088111	C	A	22	51
BRCA	TCGA-BH-A0C0	SMYD4	SNP	Missense_Mutation	17	1703856	G	C	46	58
BRCA	TCGA-BH-A0C0	MAPT	SNP	Missense_Mutation	17	44073950	G	A	40	98
BRCA	TCGA-BH-A0C0	TTLL6	SNP	Missense_Mutation	17	46862448	G	T	42	48
BRCA	TCGA-BH-A0C0	AMZ2	SNP	Missense_Mutation	17	66246405	A	G	16	77
BRCA	TCGA-BH-A0C0	ABCA9	SNP	Missense_Mutation	17	66982401	T	C	52	74
BRCA	TCGA-BH-A0C0	TP53	DEL	Frame_Shift_Del	17	7579359	G	-	39	49
BRCA	TCGA-BH-A0C0	ZNF397	SNP	Silent	18	32822449	T	A	55	52
BRCA	TCGA-BH-A0C0	GP6	SNP	Silent	19	55539160	T	A	57	19
BRCA	TCGA-BH-A0C0	C19orf21	SNP	Silent	19	757540	G	A	34	54
BRCA	TCGA-BH-A0C0	MUC16	SNP	Silent	19	9019327	G	C	47	51
BRCA	TCGA-BH-A0C0	VIT	SNP	Silent	2	36994370	T	C	55	46
BRCA	TCGA-BH-A0C0	DEFB119	SNP	Missense_Mutation	20	29976953	G	A	40	59
BRCA	TCGA-BH-A0C0	TRPC4AP	SNP	Missense_Mutation	20	33600860	A	T	3	60
BRCA	TCGA-BH-A0C0	TRAPPC10	SNP	Missense_Mutation	21	45499985	C	T	26	97
BRCA	TCGA-BH-A0C0	THOC5	SNP	Missense_Mutation	22	29945112	G	C	40	66
BRCA	TCGA-BH-A0C0	GLUD2	SNP	Missense_Mutation	23	120182736	A	G	12	73
BRCA	TCGA-BH-A0C0	PTCHD1	SNP	Missense_Mutation	23	23411647	T	A	56	87
BRCA	TCGA-BH-A0C0	FBXO40	SNP	Missense_Mutation	3	121340395	T	G	55	54
BRCA	TCGA-BH-A0C0	EFHB	SNP	Missense_Mutation	3	19959819	C	T	31	49
BRCA	TCGA-BH-A0C0	CAMK2D	SNP	Nonsense_Mutation	4	114438800	A	T	16	50
BRCA	TCGA-BH-A0C0	CCDC110	SNP	Missense_Mutation	4	186379415	C	T	29	65
BRCA	TCGA-BH-A0C0	ATOH1	SNP	Missense_Mutation	4	94750648	A	C	5	74
BRCA	TCGA-BH-A0C0	C5orf54	SNP	Missense_Mutation	5	159822112	C	T	30	58
BRCA	TCGA-BH-A0C0	RANBP17	SNP	Missense_Mutation	5	170380678	G	A	45	79
BRCA	TCGA-BH-A0C0	SEMA5A	SNP	Missense_Mutation	5	9197331	T	A	64	62
BRCA	TCGA-BH-A0C0	C6orf170	SNP	Missense_Mutation	6	121481215	G	A	45	84
BRCA	TCGA-BH-A0C0	EYA4	SNP	Missense_Mutation	6	133777745	C	T	26	73
BRCA	TCGA-BH-A0C0	STX11	SNP	Missense_Mutation	6	144507849	C	A	26	49
BRCA	TCGA-BH-A0C0	FBXO5	SNP	Missense_Mutation	6	153293436	T	G	57	45
BRCA	TCGA-BH-A0C0	OR10C1	SNP	Missense_Mutation	6	29407949	G	A	46	53
BRCA	TCGA-BH-A0C0	PTCHD4	SNP	Missense_Mutation	6	47976671	T	C	61	65
BRCA	TCGA-BH-A0C0	CREB3L2	SNP	Missense_Mutation	7	137600703	G	C	45	65
BRCA	TCGA-BH-A0C0	FERD3L	SNP	Missense_Mutation	7	19184943	C	G	30	70
BRCA	TCGA-BH-A0C0	SORBS3	SNP	Missense_Mutation	8	22419432	C	A	17	49
BRCA	TCGA-BH-A0C0	TACC1	SNP	Silent	8	38677317	C	A	21	55
BRCA	TCGA-BH-A0C0	OR1L8	SNP	Missense_Mutation	9	125329851	C	A	30	57
BRCA	TCGA-BH-A0C0	TAF1L	SNP	Missense_Mutation	9	32633233	A	T	7	71
BRCA	TCGA-BH-A0C0	ANKRD20A4	SNP	Missense_Mutation	9	69385951	G	A	41	74
BRCA	TCGA-BH-A0C1	CASZ1	SNP	Missense_Mutation	1	10714168	T	C	57	91
BRCA	TCGA-BH-A0C1	HIST2H2BE	SNP	Missense_Mutation	1	149858180	G	A	39	78
BRCA	TCGA-BH-A0C1	PODN	SNP	Silent	1	53537273	C	T	24	78
BRCA	TCGA-BH-A0C1	CACHD1	SNP	Splice_site	1	65120486	G	A	47	100
BRCA	TCGA-BH-A0C1	COL17A1	SNP	Nonsense_Mutation	10	105801282	G	A	48	74
BRCA	TCGA-BH-A0C1	YME1L1	SNP	Missense_Mutation	10	27436575	G	A	40	62
BRCA	TCGA-BH-A0C1	FBXO18	SNP	Silent	10	5945053	G	A	45	63
BRCA	TCGA-BH-A0C1	YAP1	SNP	Missense_Mutation	11	102100570	C	T	26	100
BRCA	TCGA-BH-A0C1	OR4S2	SNP	Missense_Mutation	11	55418854	G	A	42	49
BRCA	TCGA-BH-A0C1	RIC3	SNP	Silent	11	8161556	G	A	40	56
BRCA	TCGA-BH-A0C1	TMEM132C	SNP	Missense_Mutation	12	128899678	G	A	38	51
BRCA	TCGA-BH-A0C1	BAZ2A	DEL	Frame_Shift_Del	12	56994194	GATATCCTCCTGGGAGTCGGAGA	-	45	64
BRCA	TCGA-BH-A0C1	KIAA1199	SNP	Silent	15	81171141	C	T	31	44
BRCA	TCGA-BH-A0C1	VPS35	SNP	Missense_Mutation	16	46695632	C	T	25	100
BRCA	TCGA-BH-A0C1	TRADD	SNP	Missense_Mutation	16	67190466	G	A	38	52
BRCA	TCGA-BH-A0C1	CDH1	DEL	Frame_Shift_Del	16	68842414	C	-	30	99
BRCA	TCGA-BH-A0C1	ERBB2	SNP	Missense_Mutation	17	37881000	G	C	48	85
BRCA	TCGA-BH-A0C1	FSD1	SNP	Silent	19	4311945	G	A	46	53
BRCA	TCGA-BH-A0C1	HIF3A	SNP	Missense_Mutation	19	46842838	G	A	43	53
BRCA	TCGA-BH-A0C1	LINC00085	INS	Silent	19	52197329	-	AG	31	44
BRCA	TCGA-BH-A0C1	ZNF841	SNP	Missense_Mutation	19	52569331	A	C	6	60
BRCA	TCGA-BH-A0C1	ATG16L1	SNP	Missense_Mutation	2	234201936	G	A	45	96
BRCA	TCGA-BH-A0C1	RUNX1	SNP	Missense_Mutation	21	36252958	C	T	26	100
BRCA	TCGA-BH-A0C1	PCNT	SNP	Missense_Mutation	21	47836277	G	A	38	48
BRCA	TCGA-BH-A0C1	MID1	SNP	Missense_Mutation	23	10534972	C	T	31	96
BRCA	TCGA-BH-A0C1	MAGEA12	SNP	Silent	23	151899975	T	G	56	55
BRCA	TCGA-BH-A0C1	STARD8	SNP	Silent	23	67940160	C	T	19	47
BRCA	TCGA-BH-A0C1	CBLB	SNP	Missense_Mutation	3	105397361	G	A	46	87
BRCA	TCGA-BH-A0C1	SCAP	SNP	Missense_Mutation	3	47467065	G	A	42	100
BRCA	TCGA-BH-A0C1	PRMT10	SNP	Silent	4	148575485	T	C	52	47
BRCA	TCGA-BH-A0C1	ODZ3	SNP	Missense_Mutation	4	183721107	G	A	38	73
BRCA	TCGA-BH-A0C1	MAN2A1	SNP	Silent	5	109183450	C	T	32	55
BRCA	TCGA-BH-A0C1	VWA7	SNP	Missense_Mutation	6	31741200	C	T	23	94
BRCA	TCGA-BH-A0C1	HECW1	SNP	Missense_Mutation	7	43484146	G	T	42	74
BRCA	TCGA-BH-A0C1	GRID2IP	SNP	Silent	7	6541690	C	T	27	44
BRCA	TCGA-BH-A0C1	EEF1D	SNP	Missense_Mutation	8	144662795	C	T	29	88
BRCA	TCGA-BH-A0C1	IARS	SNP	Silent	9	95027830	T	A	49	43
BRCA	TCGA-BH-A0C3	KIRREL	SNP	Silent	1	158059318	G	T	46	52
BRCA	TCGA-BH-A0C3	UCK2	SNP	Silent	1	165872480	G	C	40	12
BRCA	TCGA-BH-A0C3	HNRNPR	SNP	Missense_Mutation	1	23650213	T	G	63	89
BRCA	TCGA-BH-A0C3	IGF1R	SNP	Splice_site	15	99456511	G	A	35	73
BRCA	TCGA-BH-A0C3	PKD1	SNP	Missense_Mutation	16	2161666	G	A	43	54
BRCA	TCGA-BH-A0C3	TP53	SNP	Splice_site	17	7578371	C	T	21	72
BRCA	TCGA-BH-A0C3	EPG5	SNP	Missense_Mutation	18	43534880	G	A	36	48
BRCA	TCGA-BH-A0C3	RUNX1	SNP	Missense_Mutation	21	36231791	T	C	50	87
BRCA	TCGA-BH-A0C3	AMELX	SNP	Nonsense_Mutation	23	11316986	C	T	17	70
BRCA	TCGA-BH-A0C3	NHS	DEL	Frame_Shift_Del	23	17745442	TA	-	53	53
BRCA	TCGA-BH-A0C3	ITPR1	SNP	Silent	3	4856841	T	C	55	30
BRCA	TCGA-BH-A0C3	HAVCR1	SNP	Silent	5	156482387	G	A	40	16
BRCA	TCGA-BH-A0C3	RPS6KA2	SNP	Missense_Mutation	6	166912078	G	A	40	97
BRCA	TCGA-BH-A0C3	LFNG	SNP	Splice_site	7	2564376	G	A	39	51
BRCA	TCGA-BH-A0C3	TNFRSF10C	SNP	Silent	8	22973124	T	C	57	49
BRCA	TCGA-BH-A0C3	ZNF462	SNP	Missense_Mutation	9	109771874	G	A	40	90
BRCA	TCGA-BH-A0C7	SPEN	SNP	Silent	1	16261573	G	A	34	61
BRCA	TCGA-BH-A0C7	C1orf112	SNP	Missense_Mutation	1	169770035	A	T	4	50
BRCA	TCGA-BH-A0C7	BSND	SNP	Missense_Mutation	1	55474123	C	T	26	52
BRCA	TCGA-BH-A0C7	GATA3	SNP	Missense_Mutation	10	8111503	G	A	35	100
BRCA	TCGA-BH-A0C7	GATA3	DEL	Frame_Shift_Del	10	8111506	AT	-	4	91
BRCA	TCGA-BH-A0C7	SETD8	SNP	Missense_Mutation	12	123892232	C	A	18	65
BRCA	TCGA-BH-A0C7	RB1	DEL	Frame_Shift_Del	13	48936989	C	-	18	62
BRCA	TCGA-BH-A0C7	ABCC4	SNP	Missense_Mutation	13	95696580	G	T	46	98
BRCA	TCGA-BH-A0C7	DCAF11	SNP	Missense_Mutation	14	24586235	G	T	41	76
BRCA	TCGA-BH-A0C7	ZNF423	SNP	Missense_Mutation	16	49671762	G	A	38	58
BRCA	TCGA-BH-A0C7	CCDC135	SNP	Missense_Mutation	16	57760088	C	T	23	61
BRCA	TCGA-BH-A0C7	CNGB1	SNP	Missense_Mutation	16	57994814	C	T	22	60
BRCA	TCGA-BH-A0C7	ADAMTS18	SNP	Silent	16	77353947	G	A	37	46
BRCA	TCGA-BH-A0C7	DPEP1	SNP	Missense_Mutation	16	89696849	G	T	48	50
BRCA	TCGA-BH-A0C7	ERN1	SNP	Missense_Mutation	17	62130285	C	T	26	100
BRCA	TCGA-BH-A0C7	ARRDC2	SNP	Silent	19	18119536	G	A	37	37
BRCA	TCGA-BH-A0C7	C19orf77	SNP	Missense_Mutation	19	3478909	T	A	56	62
BRCA	TCGA-BH-A0C7	ZNF414	SNP	Silent	19	8577297	C	A	25	66
BRCA	TCGA-BH-A0C7	SCN1A	SNP	Missense_Mutation	2	166900252	G	T	35	68
BRCA	TCGA-BH-A0C7	COL4A3	SNP	Missense_Mutation	2	228137792	C	T	19	67
BRCA	TCGA-BH-A0C7	DGKD	SNP	Silent	2	234343513	G	T	48	53
BRCA	TCGA-BH-A0C7	SSTR4	SNP	Silent	20	23016498	C	T	19	51
BRCA	TCGA-BH-A0C7	MRAP	SNP	Missense_Mutation	21	33686921	C	G	30	47
BRCA	TCGA-BH-A0C7	NF2	SNP	Missense_Mutation	22	30054223	G	C	33	54
BRCA	TCGA-BH-A0C7	RBMXL3	SNP	Missense_Mutation	23	114424941	G	A	38	51
BRCA	TCGA-BH-A0C7	SLC9A6	SNP	Silent	23	135112303	T	C	52	55
BRCA	TCGA-BH-A0C7	L1CAM	SNP	Missense_Mutation	23	153134145	G	A	40	60
BRCA	TCGA-BH-A0C7	ZNF41	SNP	Missense_Mutation	23	47307013	T	C	49	61
BRCA	TCGA-BH-A0C7	COL6A5	SNP	Missense_Mutation	3	130095337	C	A	25	52
BRCA	TCGA-BH-A0C7	IFT80	SNP	Missense_Mutation	3	160000320	G	A	33	98
BRCA	TCGA-BH-A0C7	KCNMB2	SNP	Nonsense_Mutation	3	178560678	C	T	17	98
BRCA	TCGA-BH-A0C7	SULT1E1	SNP	Silent	4	70707775	T	C	52	53
BRCA	TCGA-BH-A0C7	RANBP17	SNP	Missense_Mutation	5	170336737	G	A	40	60
BRCA	TCGA-BH-A0C7	IYD	SNP	Missense_Mutation	6	150710610	C	T	19	69
BRCA	TCGA-BH-A0C7	CDC5L	SNP	Missense_Mutation	6	44413549	G	A	38	67
BRCA	TCGA-BH-A0C7	GPR116	SNP	Missense_Mutation	6	46826804	T	C	53	48
BRCA	TCGA-BH-A0C7	EFHC1	SNP	Missense_Mutation	6	52285258	T	G	64	58
BRCA	TCGA-BH-A0C7	DDX43	DEL	Frame_Shift_Del	6	74123768	A	-	11	43
BRCA	TCGA-BH-A0C7	ANKRD6	SNP	Missense_Mutation	6	90276715	T	C	58	70
BRCA	TCGA-BH-A0C7	TRRAP	SNP	Missense_Mutation	7	98529083	G	A	39	98
BRCA	TCGA-BH-A0C7	KCNB2	SNP	Nonsense_Mutation	8	73480344	C	A	20	55
BRCA	TCGA-BH-A0DD	PRPF38B	SNP	Missense_Mutation	1	109238699	C	G	17	100
BRCA	TCGA-BH-A0DD	PTGS2	SNP	Missense_Mutation	1	186646005	C	T	19	67
BRCA	TCGA-BH-A0DD	SDCCAG8	SNP	Missense_Mutation	1	243434319	A	G	3	58
BRCA	TCGA-BH-A0DD	DNAH10	SNP	Silent	12	124323215	C	T	27	59
BRCA	TCGA-BH-A0DD	CACNA1C	SNP	Missense_Mutation	12	2602428	C	T	19	99
BRCA	TCGA-BH-A0DD	CHD4	SNP	Missense_Mutation	12	6710887	C	T	32	100
BRCA	TCGA-BH-A0DD	PTPRR	SNP	Missense_Mutation	12	71286478	G	A	46	55
BRCA	TCGA-BH-A0DD	NUMB	SNP	Silent	14	73753912	G	T	47	72
BRCA	TCGA-BH-A0DD	DISP2	SNP	Silent	15	40660863	C	T	27	47
BRCA	TCGA-BH-A0DD	RAB11FIP3	SNP	Missense_Mutation	16	476430	C	G	26	40
BRCA	TCGA-BH-A0DD	ABCA9	SNP	Silent	17	67004302	A	G	8	49
BRCA	TCGA-BH-A0DD	BTBD17	SNP	Missense_Mutation	17	72352897	C	A	31	99
BRCA	TCGA-BH-A0DD	BTBD17	SNP	Silent	17	72353000	C	T	32	98
BRCA	TCGA-BH-A0DD	PKN1	SNP	Missense_Mutation	19	14581448	G	A	38	87
BRCA	TCGA-BH-A0DD	SIN3B	SNP	Missense_Mutation	19	16965008	G	A	38	97
BRCA	TCGA-BH-A0DD	CEACAM6	SNP	Missense_Mutation	19	42270133	C	T	19	51
BRCA	TCGA-BH-A0DD	MARK4	SNP	Missense_Mutation	19	45766396	C	T	18	79
BRCA	TCGA-BH-A0DD	FCGRT	SNP	Missense_Mutation	19	50017150	T	A	54	52
BRCA	TCGA-BH-A0DD	GZMM	SNP	Nonsense_Mutation	19	549171	C	T	21	52
BRCA	TCGA-BH-A0DD	NOSTRIN	DEL	Frame_Shift_Del	2	169711935	AG	-	7	78
BRCA	TCGA-BH-A0DD	FASTKD1	SNP	Missense_Mutation	2	170403132	C	T	31	92
BRCA	TCGA-BH-A0DD	IDH1	SNP	Missense_Mutation	2	209106864	T	C	57	94
BRCA	TCGA-BH-A0DD	EPB41L1	SNP	Missense_Mutation	20	34761811	G	A	39	61
BRCA	TCGA-BH-A0DD	MYL9	SNP	Silent	20	35177631	C	T	27	42
BRCA	TCGA-BH-A0DD	STAG1	SNP	Splice_Site	3	136076560	A	G	14	89
BRCA	TCGA-BH-A0DD	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0DD	BSN	SNP	Missense_Mutation	3	49689964	C	T	31	99
BRCA	TCGA-BH-A0DD	FREM3	SNP	Nonsense_Mutation	4	144545442	C	T	30	51
BRCA	TCGA-BH-A0DD	POLR2B	SNP	Splice_Site	4	57896566	G	T	44	91
BRCA	TCGA-BH-A0DD	C5orf65	SNP	Missense_Mutation	5	138729303	C	T	18	55
BRCA	TCGA-BH-A0DD	EBF1	SNP	Silent	5	158523388	G	A	40	50
BRCA	TCGA-BH-A0DD	CD180	SNP	Missense_Mutation	5	66479382	G	A	44	67
BRCA	TCGA-BH-A0DD	ZNF366	SNP	Missense_Mutation	5	71739899	T	A	55	54
BRCA	TCGA-BH-A0DD	E2F3	DEL	Frame_Shift_Del	6	20488429	AAAC	-	1	88
BRCA	TCGA-BH-A0DD	FAM185A	SNP	Silent	7	102390050	G	T	48	69
BRCA	TCGA-BH-A0DD	RAB2A	DEL	Frame_Shift_Del	8	61531179	A	-	5	88
BRCA	TCGA-BH-A0DD	LHX6	SNP	Silent	9	124989262	C	T	24	52
BRCA	TCGA-BH-A0DD	LAMC3	SNP	Silent	9	133945108	C	T	19	75
BRCA	TCGA-BH-A0DD	RPS6	SNP	Missense_Mutation	9	19380191	C	T	29	87
BRCA	TCGA-BH-A0DE	DENND4B	SNP	Silent	1	153916788	G	A	40	55
BRCA	TCGA-BH-A0DE	OR10J5	SNP	Missense_Mutation	1	159505444	C	T	21	91
BRCA	TCGA-BH-A0DE	RPL5	DEL	Frame_Shift_Del	1	93299205	TATCATT	-	49	52
BRCA	TCGA-BH-A0DE	NFKB2	SNP	Missense_Mutation	10	104158032	C	T	32	96
BRCA	TCGA-BH-A0DE	MLL	SNP	Splice_Site	11	118371701	G	A	35	100
BRCA	TCGA-BH-A0DE	BCL9L	SNP	Missense_Mutation	11	118778200	G	T	42	77
BRCA	TCGA-BH-A0DE	GLIPR1	SNP	Missense_Mutation	12	75875683	C	T	19	51
BRCA	TCGA-BH-A0DE	TSC22D1	SNP	Missense_Mutation	13	45148301	G	T	33	77
BRCA	TCGA-BH-A0DE	LINGO1	SNP	Missense_Mutation	15	77907723	C	T	31	100
BRCA	TCGA-BH-A0DE	ZCCHC14	SNP	Silent	16	87446722	G	A	47	50
BRCA	TCGA-BH-A0DE	GRIN2A	SNP	Nonsense_Mutation	16	9923469	C	T	26	98
BRCA	TCGA-BH-A0DE	TUBD1	SNP	Missense_Mutation	17	57958454	G	A	43	97
BRCA	TCGA-BH-A0DE	H3F3B	SNP	Missense_Mutation	17	73774845	A	C	11	48
BRCA	TCGA-BH-A0DE	WIZ	SNP	Missense_Mutation	19	15559037	C	T	30	58
BRCA	TCGA-BH-A0DE	ARHGAP35	SNP	Silent	19	47492898	G	A	40	2
BRCA	TCGA-BH-A0DE	ZNF812	SNP	Missense_Mutation	19	9801784	A	G	4	28
BRCA	TCGA-BH-A0DE	THSD7B	SNP	Missense_Mutation	2	138425422	A	G	14	65
BRCA	TCGA-BH-A0DE	PLCB4	SNP	Missense_Mutation	20	9417740	G	T	34	97
BRCA	TCGA-BH-A0DE	GPR50	SNP	Missense_Mutation	23	150349052	C	T	23	56
BRCA	TCGA-BH-A0DE	PLXNB3	SNP	Missense_Mutation	23	153041490	C	T	19	94
BRCA	TCGA-BH-A0DE	RBM10	SNP	Silent	23	47028870	C	T	19	48
BRCA	TCGA-BH-A0DE	EIF2A	SNP	Missense_Mutation	3	150301029	G	A	47	88
BRCA	TCGA-BH-A0DE	PIK3CA	SNP	Missense_Mutation	3	178936092	A	C	11	90
BRCA	TCGA-BH-A0DE	CSRNP1	SNP	Missense_Mutation	3	39184985	T	C	49	52
BRCA	TCGA-BH-A0DE	PXK	SNP	Missense_Mutation	3	58398643	G	A	34	91
BRCA	TCGA-BH-A0DE	AFF1	SNP	Silent	4	87968539	C	T	24	40
BRCA	TCGA-BH-A0DE	PCDHGC3	SNP	Missense_Mutation	5	140856115	T	G	61	56
BRCA	TCGA-BH-A0DE	MLL3	INS	Frame_Shift_Ins	7	151878893	-	A	45	100
BRCA	TCGA-BH-A0DE	MAGI2	SNP	Missense_Mutation	7	78636505	C	T	32	98
BRCA	TCGA-BH-A0DG	CRNN	SNP	Missense_Mutation	1	152382164	G	T	41	61
BRCA	TCGA-BH-A0DG	SLC39A1	SNP	Missense_Mutation	1	153935082	A	G	7	63
BRCA	TCGA-BH-A0DG	CASQ1	SNP	Missense_Mutation	1	160160636	T	C	57	75
BRCA	TCGA-BH-A0DG	DNM3	SNP	Missense_Mutation	1	172277938	G	A	42	70
BRCA	TCGA-BH-A0DG	AIDA	SNP	Missense_Mutation	1	222843570	G	C	45	73
BRCA	TCGA-BH-A0DG	KDM4A	SNP	Missense_Mutation	1	44126037	A	G	4	77
BRCA	TCGA-BH-A0DG	RNF207	SNP	Silent	1	6272428	C	T	31	45
BRCA	TCGA-BH-A0DG	SCD	SNP	Splice_site	10	102108102	G	C	43	68
BRCA	TCGA-BH-A0DG	GATA3	INS	Frame_Shift_Ins	10	8115874	-	G	31	85
BRCA	TCGA-BH-A0DG	TNNT3	SNP	Missense_Mutation	11	1954967	G	A	40	94
BRCA	TCGA-BH-A0DG	ME3	SNP	Missense_Mutation	11	86382866	C	T	26	49
BRCA	TCGA-BH-A0DG	KIAA1033	SNP	Missense_Mutation	12	105521054	C	G	29	97
BRCA	TCGA-BH-A0DG	POLE	SNP	Missense_Mutation	12	133249314	C	A	30	72
BRCA	TCGA-BH-A0DG	PLBD1	SNP	Missense_Mutation	12	14689538	C	T	32	51
BRCA	TCGA-BH-A0DG	ATP2A3	SNP	Missense_Mutation	17	3831310	G	A	37	50
BRCA	TCGA-BH-A0DG	YES1	SNP	Missense_Mutation	18	743380	C	G	17	100
BRCA	TCGA-BH-A0DG	SHANK1	SNP	Missense_Mutation	19	51207386	G	T	48	55
BRCA	TCGA-BH-A0DG	C3	SNP	Missense_Mutation	19	6697369	A	C	10	51
BRCA	TCGA-BH-A0DG	STXBP2	SNP	Splice_site	19	7704692	A	C	3	84
BRCA	TCGA-BH-A0DG	ZDBF2	SNP	Missense_Mutation	2	207175935	C	T	31	53
BRCA	TCGA-BH-A0DG	FAM217B	SNP	Missense_Mutation	20	58519516	G	A	37	49
BRCA	TCGA-BH-A0DG	KRTAP24-1	SNP	Missense_Mutation	21	31655201	G	A	44	54
BRCA	TCGA-BH-A0DG	MAGEH1	SNP	Missense_Mutation	23	55478908	C	A	24	51
BRCA	TCGA-BH-A0DG	GPR143	SNP	Missense_Mutation	23	9707633	C	T	29	68
BRCA	TCGA-BH-A0DG	CYFIP2	SNP	Missense_Mutation	5	156760407	G	T	41	100
BRCA	TCGA-BH-A0DG	SRD5A1	SNP	Missense_Mutation	5	6663054	T	C	50	21
BRCA	TCGA-BH-A0DG	PKHD1	SNP	Splice_Site	6	51512917	C	G	32	82
BRCA	TCGA-BH-A0DG	WDR86	SNP	Missense_Mutation	7	151093118	G	A	38	27
BRCA	TCGA-BH-A0DG	SOX7	SNP	Silent	8	10583590	G	A	39	47
BRCA	TCGA-BH-A0DG	GOLGA2	SNP	Missense_Mutation	9	131038206	G	A	44	54
BRCA	TCGA-BH-A0DH	MPC2	SNP	Missense_Mutation	1	167889845	C	T	29	94
BRCA	TCGA-BH-A0DH	HMCN1	SNP	Missense_Mutation	1	186072719	G	A	45	76
BRCA	TCGA-BH-A0DH	C1orf222	SNP	Missense_Mutation	1	1888168	G	A	40	65
BRCA	TCGA-BH-A0DH	OBSCN	SNP	Missense_Mutation	1	228412196	G	A	38	37
BRCA	TCGA-BH-A0DH	GUCA2B	SNP	Silent	1	42621219	C	T	19	6
BRCA	TCGA-BH-A0DH	RAD54L	SNP	Missense_Mutation	1	46738424	T	C	51	77
BRCA	TCGA-BH-A0DH	SEC24C	SNP	Missense_Mutation	10	75527697	G	A	41	100
BRCA	TCGA-BH-A0DH	RASGRP2	SNP	Missense_Mutation	11	64497587	C	T	19	68
BRCA	TCGA-BH-A0DH	LEPREL2	SNP	Missense_Mutation	12	6939134	C	T	31	62
BRCA	TCGA-BH-A0DH	IGDCC3	SNP	Missense_Mutation	15	65621396	C	T	30	53
BRCA	TCGA-BH-A0DH	SCNN1B	SNP	Splice_site	16	23366809	C	T	23	63
BRCA	TCGA-BH-A0DH	SH2B1	SNP	Missense_Mutation	16	28878286	C	T	31	78
BRCA	TCGA-BH-A0DH	CCDC102A	SNP	Missense_Mutation	16	57552033	C	T	27	76
BRCA	TCGA-BH-A0DH	CTCF	SNP	Missense_Mutation	16	67645922	C	A	29	99
BRCA	TCGA-BH-A0DH	DNAH9	SNP	Missense_Mutation	17	11597194	A	G	3	69
BRCA	TCGA-BH-A0DH	LASP1	SNP	Missense_Mutation	17	37074895	A	C	10	89
BRCA	TCGA-BH-A0DH	ALOX12	SNP	Missense_Mutation	17	6900318	G	C	35	42
BRCA	TCGA-BH-A0DH	CBX2	SNP	Silent	17	77758181	C	T	27	61
BRCA	TCGA-BH-A0DH	CBX8	SNP	Missense_Mutation	17	77768660	C	T	28	63
BRCA	TCGA-BH-A0DH	TBCD	SNP	Missense_Mutation	17	80878479	G	A	35	68
BRCA	TCGA-BH-A0DH	TWSG1	SNP	Missense_Mutation	18	9396368	G	A	39	97
BRCA	TCGA-BH-A0DH	MLL4	SNP	Silent	19	36220104	C	T	19	38
BRCA	TCGA-BH-A0DH	STXBP2	SNP	Silent	19	7707366	C	T	19	47
BRCA	TCGA-BH-A0DH	PTPN4	DNP	Missense_Mutation	2	120702704	AA	CC	1	82
BRCA	TCGA-BH-A0DH	UBR3	SNP	Missense_Mutation	2	170897490	G	A	38	48
BRCA	TCGA-BH-A0DH	CERKL	SNP	Missense_Mutation	2	182438569	G	T	43	91
BRCA	TCGA-BH-A0DH	PLCG1	SNP	Splice_Site	20	39796490	A	G	7	89
BRCA	TCGA-BH-A0DH	STAU1	SNP	Missense_Mutation	20	47736592	T	G	60	79
BRCA	TCGA-BH-A0DH	SLC25A18	SNP	Silent	22	18065387	C	T	19	50
BRCA	TCGA-BH-A0DH	PLXNB2	SNP	Silent	22	50720382	G	A	45	49
BRCA	TCGA-BH-A0DH	MAGEC1	SNP	Missense_Mutation	23	140995480	C	G	29	45
BRCA	TCGA-BH-A0DH	GPR50	SNP	Silent	23	150349192	C	T	23	45
BRCA	TCGA-BH-A0DH	LOC347376	SNP	Missense_Mutation	23	50648708	G	T	39	54
BRCA	TCGA-BH-A0DH	MUC4	SNP	Silent	3	195513168	A	T	9	54
BRCA	TCGA-BH-A0DH	FAT4	SNP	Missense_Mutation	4	126239428	C	T	30	68
BRCA	TCGA-BH-A0DH	LETM1	SNP	Missense_Mutation	4	1838164	A	T	10	88
BRCA	TCGA-BH-A0DH	TMCO6	SNP	Silent	5	140023514	G	A	46	52
BRCA	TCGA-BH-A0DH	REV3L	SNP	Missense_Mutation	6	111697571	C	T	29	64
BRCA	TCGA-BH-A0DH	LPA	SNP	Nonsense_Mutation	6	161015051	G	A	45	64
BRCA	TCGA-BH-A0DH	MUC12	SNP	Splice_site	7	100661916	G	A	45	53
BRCA	TCGA-BH-A0DH	AUTS2	SNP	Missense_Mutation	7	70252221	G	T	41	96
BRCA	TCGA-BH-A0DH	ODF2	SNP	Silent	9	131256860	G	A	37	40
BRCA	TCGA-BH-A0DH	MELK	SNP	Missense_Mutation	9	36651752	G	A	45	77
BRCA	TCGA-BH-A0DI	GPSM2	SNP	Splice_site	1	109440722	G	T	45	100
BRCA	TCGA-BH-A0DI	HMCN1	SNP	Missense_Mutation	1	186024579	G	C	37	60
BRCA	TCGA-BH-A0DI	INPP5B	SNP	Silent	1	38354001	T	C	51	44
BRCA	TCGA-BH-A0DI	PDCD11	SNP	Missense_Mutation	10	105181309	C	G	24	64
BRCA	TCGA-BH-A0DI	CCDC147	SNP	Silent	10	106166473	G	T	45	74
BRCA	TCGA-BH-A0DI	OR8K1	SNP	Missense_Mutation	11	56114328	C	T	29	54
BRCA	TCGA-BH-A0DI	FGF3	SNP	Missense_Mutation	11	69625120	C	T	19	48
BRCA	TCGA-BH-A0DI	FGD4	SNP	Silent	12	32791747	G	A	48	39
BRCA	TCGA-BH-A0DI	PRMT8	SNP	Missense_Mutation	12	3702343	C	T	27	82
BRCA	TCGA-BH-A0DI	CNTN1	SNP	Missense_Mutation	12	41337803	C	T	19	95
BRCA	TCGA-BH-A0DI	GALNTL1	SNP	Missense_Mutation	14	69813893	G	A	38	49
BRCA	TCGA-BH-A0DI	CDH8	SNP	Missense_Mutation	16	61687928	C	T	32	100
BRCA	TCGA-BH-A0DI	MYO19	SNP	Silent	17	34863744	T	C	50	39
BRCA	TCGA-BH-A0DI	TP53	SNP	Missense_Mutation	17	7577517	A	T	12	86
BRCA	TCGA-BH-A0DI	LDLR	SNP	Silent	19	11221353	C	T	19	37
BRCA	TCGA-BH-A0DI	ZNF93	SNP	Nonsense_Mutation	19	20045077	C	G	29	53
BRCA	TCGA-BH-A0DI	HNRNPUL1	SNP	Missense_Mutation	19	41811663	C	A	24	65
BRCA	TCGA-BH-A0DI	TTN	SNP	Missense_Mutation	2	179410619	C	T	20	87
BRCA	TCGA-BH-A0DI	SLC2A10	SNP	Missense_Mutation	20	45354472	G	T	41	58
BRCA	TCGA-BH-A0DI	PIK3IP1	SNP	Missense_Mutation	22	31685334	C	T	30	95
BRCA	TCGA-BH-A0DI	TRO	SNP	Splice_Site	23	54950989	G	T	44	57
BRCA	TCGA-BH-A0DI	P2RY13	SNP	Missense_Mutation	3	151047297	C	G	32	56
BRCA	TCGA-BH-A0DI	EGF	SNP	Silent	4	110882135	A	G	2	59
BRCA	TCGA-BH-A0DI	PDCL2	SNP	Missense_Mutation	4	56428697	C	T	19	79
BRCA	TCGA-BH-A0DI	SLC6A3	SNP	Missense_Mutation	5	1414821	C	A	30	65
BRCA	TCGA-BH-A0DI	ANXA6	SNP	Missense_Mutation	5	150483207	C	T	27	92
BRCA	TCGA-BH-A0DI	HMMR	SNP	Silent	5	162910044	G	A	33	63
BRCA	TCGA-BH-A0DI	PIK3R1	DEL	In_Frame_Del	5	67591095	TGAACAGCATTAAACCAGACCTTATCCAGC	-	51	90
BRCA	TCGA-BH-A0DI	CDK7	SNP	Missense_Mutation	5	68565064	G	C	45	96
BRCA	TCGA-BH-A0DI	RPS17P5	SNP	Missense_Mutation	6	50825307	G	C	44	41
BRCA	TCGA-BH-A0DI	MRPL32	SNP	Missense_Mutation	7	42972017	C	T	31	55
BRCA	TCGA-BH-A0DI	PHTF2	SNP	Missense_Mutation	7	77569914	C	T	29	100
BRCA	TCGA-BH-A0DI	ANKS6	SNP	Missense_Mutation	9	101546367	G	A	38	91
BRCA	TCGA-BH-A0DI	ZNF483	SNP	Missense_Mutation	9	114305275	G	C	41	77
BRCA	TCGA-BH-A0DK	TMEM167B	SNP	Missense_Mutation	1	109637064	T	G	51	61
BRCA	TCGA-BH-A0DK	LRIF1	DEL	In_Frame_Del	1	111494337	GGAGTATCA	-	47	73
BRCA	TCGA-BH-A0DK	OLFML3	SNP	Missense_Mutation	1	114523891	C	G	28	56
BRCA	TCGA-BH-A0DK	ILF2	SNP	Nonsense_Mutation	1	153635021	C	A	29	90
BRCA	TCGA-BH-A0DK	DCST1	SNP	Missense_Mutation	1	155014231	G	T	45	56
BRCA	TCGA-BH-A0DK	SPATA21	SNP	Silent	1	16735620	T	C	56	43
BRCA	TCGA-BH-A0DK	TNR	SNP	Missense_Mutation	1	175334374	A	G	11	76
BRCA	TCGA-BH-A0DK	SLC26A9	SNP	Missense_Mutation	1	205897041	C	G	30	93
BRCA	TCGA-BH-A0DK	NSL1	SNP	Missense_Mutation	1	212911824	T	C	56	64
BRCA	TCGA-BH-A0DK	HLX	SNP	Missense_Mutation	1	221055680	C	T	19	100
BRCA	TCGA-BH-A0DK	PSEN2	SNP	Missense_Mutation	1	227076718	C	T	27	85
BRCA	TCGA-BH-A0DK	C1orf57	SNP	Silent	1	233091325	C	T	30	65
BRCA	TCGA-BH-A0DK	HNRNPU	SNP	Silent	1	245020096	G	T	43	51
BRCA	TCGA-BH-A0DK	HNRNPU	SNP	Missense_Mutation	1	245020102	C	G	32	71
BRCA	TCGA-BH-A0DK	KIAA1522	SNP	Missense_Mutation	1	33237128	C	T	30	63
BRCA	TCGA-BH-A0DK	DOCK7	SNP	Nonsense_Mutation	1	63005436	G	T	45	86
BRCA	TCGA-BH-A0DK	PKN2	SNP	Missense_Mutation	1	89298781	C	T	19	63
BRCA	TCGA-BH-A0DK	CALHM2	SNP	Missense_Mutation	10	105209118	G	A	41	53
BRCA	TCGA-BH-A0DK	SLK	SNP	Missense_Mutation	10	105762296	A	T	13	50
BRCA	TCGA-BH-A0DK	SLC25A16	SNP	Nonsense_Mutation	10	70243321	A	C	8	55
BRCA	TCGA-BH-A0DK	GATA3	INS	Frame_Shift_Ins	10	8115941	-	T	24	54
BRCA	TCGA-BH-A0DK	GRID1	SNP	Missense_Mutation	10	87898775	C	T	19	98
BRCA	TCGA-BH-A0DK	RNF214	SNP	Missense_Mutation	11	117152922	C	A	21	71
BRCA	TCGA-BH-A0DK	UBE4A	SNP	Missense_Mutation	11	118267106	T	A	50	92
BRCA	TCGA-BH-A0DK	OR5B2	SNP	Missense_Mutation	11	58190572	T	G	59	55
BRCA	TCGA-BH-A0DK	BSCL2	SNP	Missense_Mutation	11	62458135	C	T	32	74
BRCA	TCGA-BH-A0DK	BSCL2	SNP	Missense_Mutation	11	62458334	C	T	29	53
BRCA	TCGA-BH-A0DK	MEN1	SNP	Missense_Mutation	11	64575553	G	A	41	90
BRCA	TCGA-BH-A0DK	MPHOSPH9	SNP	Missense_Mutation	12	123687511	C	G	32	75
BRCA	TCGA-BH-A0DK	ITGB7	SNP	Silent	12	53587622	G	T	39	59
BRCA	TCGA-BH-A0DK	CAND1	SNP	Missense_Mutation	12	67699121	C	T	31	77
BRCA	TCGA-BH-A0DK	SCFD1	SNP	Missense_Mutation	14	31119774	C	A	20	66
BRCA	TCGA-BH-A0DK	STRN3	SNP	Silent	14	31381224	A	C	9	73
BRCA	TCGA-BH-A0DK	TRPM7	SNP	Missense_Mutation	15	50884259	T	C	57	67
BRCA	TCGA-BH-A0DK	CYP11A1	SNP	Missense_Mutation	15	74631030	C	A	31	81
BRCA	TCGA-BH-A0DK	SRRM2	SNP	Silent	16	2817327	G	A	39	53
BRCA	TCGA-BH-A0DK	DOC2A	SNP	Missense_Mutation	16	30017763	T	C	49	70
BRCA	TCGA-BH-A0DK	PRSS53	DEL	Frame_Shift_Del	16	31098970	CT	-	20	50
BRCA	TCGA-BH-A0DK	AARS	SNP	Missense_Mutation	16	70299461	C	T	32	83
BRCA	TCGA-BH-A0DK	ANKRD11	INS	Frame_Shift_Ins	16	89351746	-	T	28	74
BRCA	TCGA-BH-A0DK	NGFR	SNP	Nonsense_Mutation	17	47589366	C	T	21	80
BRCA	TCGA-BH-A0DK	KIF1C	SNP	Missense_Mutation	17	4906970	G	A	43	98
BRCA	TCGA-BH-A0DK	DSC2	SNP	Missense_Mutation	18	28659860	G	A	44	49
BRCA	TCGA-BH-A0DK	ANKRD12	DEL	Frame_Shift_Del	18	9255963	AG	-	7	65
BRCA	TCGA-BH-A0DK	ABCA7	SNP	Missense_Mutation	19	1043431	T	A	56	81
BRCA	TCGA-BH-A0DK	SPRED3	SNP	Missense_Mutation	19	38882594	G	T	47	75
BRCA	TCGA-BH-A0DK	ATP1A3	SNP	Missense_Mutation	19	42482107	C	T	19	79
BRCA	TCGA-BH-A0DK	PRKD2	SNP	Missense_Mutation	19	47181714	G	C	44	66
BRCA	TCGA-BH-A0DK	MUC16	SNP	Silent	19	9091401	T	C	62	50
BRCA	TCGA-BH-A0DK	LONRF2	SNP	Missense_Mutation	2	100903408	C	A	21	99
BRCA	TCGA-BH-A0DK	EPB41L5	SNP	Missense_Mutation	2	120918514	G	T	46	41
BRCA	TCGA-BH-A0DK	COBLL1	SNP	Missense_Mutation	2	165550903	C	A	20	62
BRCA	TCGA-BH-A0DK	LRP2	SNP	Missense_Mutation	2	170022539	G	T	44	50
BRCA	TCGA-BH-A0DK	CYP20A1	SNP	Silent	2	204154590	T	C	62	54
BRCA	TCGA-BH-A0DK	NRP2	SNP	Missense_Mutation	2	206617652	G	A	39	50
BRCA	TCGA-BH-A0DK	SPHKAP	SNP	Missense_Mutation	2	228881884	C	T	31	94
BRCA	TCGA-BH-A0DK	ATAD2B	SNP	Silent	2	24011446	T	C	62	56
BRCA	TCGA-BH-A0DK	CTNNA2	SNP	Silent	2	80540719	A	G	15	50
BRCA	TCGA-BH-A0DK	CPXM1	SNP	Silent	20	2774881	C	T	23	35
BRCA	TCGA-BH-A0DK	RPRD1B	SNP	Silent	20	36676792	G	A	45	69
BRCA	TCGA-BH-A0DK	CDH4	SNP	Silent	20	60348142	C	T	19	51
BRCA	TCGA-BH-A0DK	PWP2	SNP	Missense_Mutation	21	45540528	A	T	6	85
BRCA	TCGA-BH-A0DK	PES1	SNP	Missense_Mutation	22	30975882	C	T	27	98
BRCA	TCGA-BH-A0DK	ADSL	SNP	Missense_Mutation	22	40760339	G	C	47	95
BRCA	TCGA-BH-A0DK	COL4A5	SNP	Missense_Mutation	23	107924151	G	T	42	92
BRCA	TCGA-BH-A0DK	DOCK11	SNP	Missense_Mutation	23	117749569	G	C	42	60
BRCA	TCGA-BH-A0DK	CBLB	SNP	Splice_site	3	105452983	T	C	62	89
BRCA	TCGA-BH-A0DK	KIAA1524	SNP	Nonsense_Mutation	3	108287044	T	A	64	84
BRCA	TCGA-BH-A0DK	P2RY1	SNP	Missense_Mutation	3	152554217	A	T	8	54
BRCA	TCGA-BH-A0DK	PIK3CA	SNP	Missense_Mutation	3	178927980	T	C	55	89
BRCA	TCGA-BH-A0DK	FHDC1	DEL	Frame_Shift_Del	4	153893569	AA	-	5	49
BRCA	TCGA-BH-A0DK	PI4K2B	SNP	Missense_Mutation	4	25258269	G	C	36	57
BRCA	TCGA-BH-A0DK	ODAM	SNP	Missense_Mutation	4	71062264	A	G	9	61
BRCA	TCGA-BH-A0DK	ANKHD1	SNP	Missense_Mutation	5	139889608	G	T	34	87
BRCA	TCGA-BH-A0DK	HEATR7B2	SNP	Silent	5	41058279	C	T	26	52
BRCA	TCGA-BH-A0DK	CEP72	SNP	Missense_Mutation	5	620293	A	G	10	82
BRCA	TCGA-BH-A0DK	AP3B1	SNP	Missense_Mutation	5	77423976	G	A	45	88
BRCA	TCGA-BH-A0DK	ZFYVE16	SNP	Missense_Mutation	5	79734566	A	C	6	57
BRCA	TCGA-BH-A0DK	LIX1	SNP	Silent	5	96430596	G	T	47	65
BRCA	TCGA-BH-A0DK	ZBTB24	SNP	Missense_Mutation	6	109787472	G	T	33	72
BRCA	TCGA-BH-A0DK	HBS1L	SNP	Missense_Mutation	6	135287593	C	G	32	87
BRCA	TCGA-BH-A0DK	GINM1	SNP	Missense_Mutation	6	149893676	G	A	44	58
BRCA	TCGA-BH-A0DK	C6orf136	SNP	Nonsense_Mutation	6	30617375	G	A	47	58
BRCA	TCGA-BH-A0DK	METTL2B	SNP	Missense_Mutation	7	128119302	C	G	18	73
BRCA	TCGA-BH-A0DK	PKD1L1	SNP	Missense_Mutation	7	47847972	C	T	30	66
BRCA	TCGA-BH-A0DK	DDC	SNP	Silent	7	50611610	G	A	40	39
BRCA	TCGA-BH-A0DK	PTPN12	SNP	Missense_Mutation	7	77256423	C	G	32	51
BRCA	TCGA-BH-A0DK	PHTF2	INS	Splice_Site	7	77469618	-	T	44	81
BRCA	TCGA-BH-A0DK	TATDN1	SNP	Silent	8	125528004	G	T	47	50
BRCA	TCGA-BH-A0DK	ARFGEF1	SNP	Silent	8	68204307	G	A	33	62
BRCA	TCGA-BH-A0DK	ARFGEF1	SNP	Missense_Mutation	8	68204310	G	A	45	61
BRCA	TCGA-BH-A0DK	POP1	SNP	Missense_Mutation	8	99135672	G	C	36	50
BRCA	TCGA-BH-A0DK	CNTRL	SNP	Missense_Mutation	9	123888093	C	A	26	76
BRCA	TCGA-BH-A0DK	GPR107	SNP	Missense_Mutation	9	132863474	A	T	3	91
BRCA	TCGA-BH-A0DK	ADAMTS13	SNP	Missense_Mutation	9	136323154	A	G	8	62
BRCA	TCGA-BH-A0DK	SEC16A	SNP	Missense_Mutation	9	139357554	G	T	33	49
BRCA	TCGA-BH-A0DK	CA9	SNP	Missense_Mutation	9	35676160	C	T	23	61
BRCA	TCGA-BH-A0DL	HRNR	SNP	Missense_Mutation	1	152185679	C	A	22	43
BRCA	TCGA-BH-A0DL	SEC16B	SNP	Missense_Mutation	1	177911130	C	T	19	51
BRCA	TCGA-BH-A0DL	VWA5B1	SNP	Missense_Mutation	1	20656786	C	G	18	65
BRCA	TCGA-BH-A0DL	GHITM	SNP	Missense_Mutation	10	85902493	T	C	51	57
BRCA	TCGA-BH-A0DL	MUC5B	SNP	Silent	11	1155537	G	A	38	34
BRCA	TCGA-BH-A0DL	OR4C15	SNP	Silent	11	55322145	C	T	30	45
BRCA	TCGA-BH-A0DL	ANAPC5	SNP	Missense_Mutation	12	121775176	T	A	50	90
BRCA	TCGA-BH-A0DL	POLE	SNP	Missense_Mutation	12	133253205	G	T	44	100
BRCA	TCGA-BH-A0DL	PCDH17	SNP	Silent	13	58208939	T	A	59	53
BRCA	TCGA-BH-A0DL	SLITRK6	SNP	Missense_Mutation	13	86369908	C	A	17	78
BRCA	TCGA-BH-A0DL	SPTLC2	SNP	Missense_Mutation	14	78043232	A	C	2	92
BRCA	TCGA-BH-A0DL	PDXDC1	SNP	Missense_Mutation	16	15100357	T	C	56	87
BRCA	TCGA-BH-A0DL	NUDT7	SNP	Missense_Mutation	16	77759477	A	G	11	73
BRCA	TCGA-BH-A0DL	TP53	SNP	Missense_Mutation	17	7577081	T	G	62	75
BRCA	TCGA-BH-A0DL	MYL12A	SNP	Missense_Mutation	18	3253901	G	A	45	100
BRCA	TCGA-BH-A0DL	MYL12A	SNP	Missense_Mutation	18	3254033	G	C	45	100
BRCA	TCGA-BH-A0DL	CD97	SNP	Missense_Mutation	19	14517708	G	A	40	69
BRCA	TCGA-BH-A0DL	ZNF320	SNP	Silent	19	53384563	A	G	3	40
BRCA	TCGA-BH-A0DL	TTN	SNP	Missense_Mutation	2	179463325	G	T	33	51
BRCA	TCGA-BH-A0DL	LOC100131482	SNP	Silent	2	180679175	A	T	14	54
BRCA	TCGA-BH-A0DL	LTBP1	SNP	Missense_Mutation	2	33500981	C	G	23	54
BRCA	TCGA-BH-A0DL	ZNFX1	SNP	Missense_Mutation	20	47855789	G	A	39	53
BRCA	TCGA-BH-A0DL	LAMA5	SNP	Missense_Mutation	20	60912928	C	T	27	51
BRCA	TCGA-BH-A0DL	CLDN5	SNP	Missense_Mutation	22	19511619	A	G	6	75
BRCA	TCGA-BH-A0DL	L3MBTL2	SNP	Missense_Mutation	22	41605850	C	T	31	58
BRCA	TCGA-BH-A0DL	SLC25A53	SNP	Missense_Mutation	23	103349780	C	T	23	85
BRCA	TCGA-BH-A0DL	ARHGAP6	SNP	Silent	23	11162155	G	A	42	53
BRCA	TCGA-BH-A0DL	NDUFA1	SNP	Silent	23	119005892	C	T	30	42
BRCA	TCGA-BH-A0DL	PTCHD1	SNP	Missense_Mutation	23	23353126	G	A	38	94
BRCA	TCGA-BH-A0DL	KDM6A	DEL	Splice_site	23	44894229	AAGT	-	1	69
BRCA	TCGA-BH-A0DL	ARHGEF9	SNP	Missense_Mutation	23	62917109	C	T	29	93
BRCA	TCGA-BH-A0DL	ABCB7	SNP	Missense_Mutation	23	74296386	G	A	46	71
BRCA	TCGA-BH-A0DL	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0DL	CCR1	SNP	Missense_Mutation	3	46244889	C	T	29	72
BRCA	TCGA-BH-A0DL	GNAI2	SNP	Missense_Mutation	3	50273876	C	A	28	82
BRCA	TCGA-BH-A0DL	ANKRD50	SNP	Missense_Mutation	4	125593120	T	C	49	89
BRCA	TCGA-BH-A0DL	CHD1	SNP	Missense_Mutation	5	98235337	T	C	64	70
BRCA	TCGA-BH-A0DL	KCNQ5	SNP	Missense_Mutation	6	73787062	G	A	38	100
BRCA	TCGA-BH-A0DL	COL12A1	SNP	Missense_Mutation	6	75834939	A	C	3	56
BRCA	TCGA-BH-A0DL	LAMB4	SNP	Missense_Mutation	7	107688451	C	T	23	69
BRCA	TCGA-BH-A0DL	SNTB1	SNP	Missense_Mutation	8	121823729	C	G	30	94
BRCA	TCGA-BH-A0DL	ADCY8	SNP	Missense_Mutation	8	131826458	G	A	39	61
BRCA	TCGA-BH-A0DL	CARD9	SNP	Missense_Mutation	9	139266463	G	A	37	60
BRCA	TCGA-BH-A0DL	CDC37L1	SNP	Missense_Mutation	9	4697194	C	T	29	82
BRCA	TCGA-BH-A0DO	TCHH	SNP	Silent	1	152079924	G	A	41	48
BRCA	TCGA-BH-A0DO	OR6A2	SNP	Missense_Mutation	11	6816047	C	T	27	57
BRCA	TCGA-BH-A0DO	SLITRK1	SNP	Missense_Mutation	13	84454919	C	T	31	82
BRCA	TCGA-BH-A0DO	MAPK8IP3	SNP	Missense_Mutation	16	1793389	G	C	40	98
BRCA	TCGA-BH-A0DO	ZNF568	SNP	Missense_Mutation	19	37441513	G	A	48	54
BRCA	TCGA-BH-A0DO	WDR87	SNP	Silent	19	38380122	G	A	34	51
BRCA	TCGA-BH-A0DO	SFRS16	SNP	Missense_Mutation	19	45567648	C	G	30	66
BRCA	TCGA-BH-A0DO	SIGLEC6	SNP	Silent	19	52033695	G	A	38	47
BRCA	TCGA-BH-A0DO	STAM2	SNP	Missense_Mutation	2	152988657	C	T	29	60
BRCA	TCGA-BH-A0DO	PASK	SNP	Missense_Mutation	2	242051776	C	T	31	68
BRCA	TCGA-BH-A0DO	MX1	SNP	Missense_Mutation	21	42823096	A	G	16	51
BRCA	TCGA-BH-A0DO	PTCHD1	SNP	Silent	23	23411483	C	T	24	67
BRCA	TCGA-BH-A0DO	PIK3CA	SNP	Missense_Mutation	3	178952074	G	A	45	100
BRCA	TCGA-BH-A0DO	CACNA1D	SNP	Silent	3	53779689	C	T	31	48
BRCA	TCGA-BH-A0DO	HIVEP2	DEL	Frame_Shift_Del	6	143074830	G	-	48	63
BRCA	TCGA-BH-A0DO	EGR3	DEL	Frame_Shift_Del	8	22548686	GAGTAGAG	-	45	70
BRCA	TCGA-BH-A0DO	CSMD1	SNP	Missense_Mutation	8	4494943	G	A	47	64
BRCA	TCGA-BH-A0DO	SETX	SNP	Missense_Mutation	9	135153491	T	G	61	61
BRCA	TCGA-BH-A0DP	FLG	SNP	Missense_Mutation	1	152282524	G	A	37	54
BRCA	TCGA-BH-A0DP	NUP160	SNP	Missense_Mutation	11	47814420	T	C	60	68
BRCA	TCGA-BH-A0DP	SLCO1B7	SNP	Missense_Mutation	12	21168658	G	A	35	85
BRCA	TCGA-BH-A0DP	GPR182	SNP	Silent	12	57389644	G	A	39	48
BRCA	TCGA-BH-A0DP	DCLK1	SNP	Silent	13	36700119	G	A	39	44
BRCA	TCGA-BH-A0DP	FAN1	DEL	Frame_Shift_Del	15	31197787	TG	-	55	52
BRCA	TCGA-BH-A0DP	NOB1	DEL	Frame_Shift_Del	16	69776213	TTTGCCTGCGGGAACTCGCTCTTCACCT	-	52	39
BRCA	TCGA-BH-A0DP	MAP2K4	SNP	Missense_Mutation	17	12011144	C	T	31	98
BRCA	TCGA-BH-A0DP	GRN	SNP	Missense_Mutation	17	42427851	T	G	59	40
BRCA	TCGA-BH-A0DP	CCDC11	SNP	Missense_Mutation	18	47777321	T	C	51	52
BRCA	TCGA-BH-A0DP	NINL	SNP	Missense_Mutation	20	25459629	G	C	35	49
BRCA	TCGA-BH-A0DP	SGSM1	SNP	Missense_Mutation	22	25308612	G	T	42	99
BRCA	TCGA-BH-A0DP	ITGB5	SNP	Missense_Mutation	3	124540269	T	C	50	79
BRCA	TCGA-BH-A0DP	PIK3R4	SNP	Missense_Mutation	3	130452677	G	C	35	86
BRCA	TCGA-BH-A0DP	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-BH-A0DP	RPSA	SNP	Missense_Mutation	3	39452384	A	C	6	84
BRCA	TCGA-BH-A0DP	PCDHB12	SNP	Silent	5	140590267	G	A	39	47
BRCA	TCGA-BH-A0DP	EXOC3	SNP	Missense_Mutation	5	453697	A	G	12	62
BRCA	TCGA-BH-A0DP	RNGTT	SNP	Missense_Mutation	6	89600290	C	T	17	84
BRCA	TCGA-BH-A0DP	EBF2	SNP	Missense_Mutation	8	25897605	C	T	31	97
BRCA	TCGA-BH-A0DQ	SMYD2	SNP	Silent	1	214504346	C	T	21	53
BRCA	TCGA-BH-A0DQ	COL16A1	SNP	Silent	1	32127285	G	A	42	46
BRCA	TCGA-BH-A0DQ	ACSL5	SNP	Splice_Site	10	114168281	T	C	57	91
BRCA	TCGA-BH-A0DQ	KIAA0913	DEL	Frame_Shift_Del	10	75560085	A	-	7	50
BRCA	TCGA-BH-A0DQ	TECTA	INS	Frame_Shift_Ins	11	121030932	-	C	34	79
BRCA	TCGA-BH-A0DQ	SBF2	SNP	Silent	11	9853808	G	A	37	46
BRCA	TCGA-BH-A0DQ	SLC24A6	SNP	Missense_Mutation	12	113737727	C	T	28	75
BRCA	TCGA-BH-A0DQ	GTF2H3	SNP	Splice_site	12	124144342	T	A	59	89
BRCA	TCGA-BH-A0DQ	MIS18BP1	SNP	Missense_Mutation	14	45687625	C	A	18	80
BRCA	TCGA-BH-A0DQ	GDPGP1	SNP	Missense_Mutation	15	90784678	C	T	27	55
BRCA	TCGA-BH-A0DQ	WWP2	SNP	Missense_Mutation	16	69965057	C	T	19	56
BRCA	TCGA-BH-A0DQ	C1QL1	SNP	Silent	17	43045000	G	A	43	48
BRCA	TCGA-BH-A0DQ	MINK1	SNP	Missense_Mutation	17	4796018	G	A	39	60
BRCA	TCGA-BH-A0DQ	LAMA1	SNP	Missense_Mutation	18	7040119	C	T	22	100
BRCA	TCGA-BH-A0DQ	KCNC3	SNP	Nonsense_Mutation	19	50831788	G	T	34	64
BRCA	TCGA-BH-A0DQ	ZNF460	SNP	Missense_Mutation	19	57802202	G	A	43	47
BRCA	TCGA-BH-A0DQ	MAP2K7	INS	Frame_Shift_Ins	19	7974955	-	TT	12	84
BRCA	TCGA-BH-A0DQ	PGAP1	SNP	Splice_site	2	197709249	A	G	6	56
BRCA	TCGA-BH-A0DQ	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	TCGA-BH-A0DQ	NRP2	SNP	Missense_Mutation	2	206610543	G	A	39	100
BRCA	TCGA-BH-A0DQ	COLEC11	SNP	Missense_Mutation	2	3691410	G	A	38	84
BRCA	TCGA-BH-A0DQ	TSGA10	SNP	Nonsense_Mutation	2	99634761	A	T	12	54
BRCA	TCGA-BH-A0DQ	ACTRT1	SNP	Missense_Mutation	23	127186074	C	T	19	59
BRCA	TCGA-BH-A0DQ	FAM127C	SNP	Silent	23	134156265	G	A	39	29
BRCA	TCGA-BH-A0DQ	WNK3	SNP	Missense_Mutation	23	54335680	C	T	22	95
BRCA	TCGA-BH-A0DQ	VSIG4	SNP	Silent	23	65244946	G	A	45	49
BRCA	TCGA-BH-A0DQ	MFI2	SNP	Missense_Mutation	3	196751207	G	A	39	65
BRCA	TCGA-BH-A0DQ	INPP4B	SNP	Missense_Mutation	4	143067052	C	T	26	67
BRCA	TCGA-BH-A0DQ	RNF44	SNP	Missense_Mutation	5	175957174	T	G	59	61
BRCA	TCGA-BH-A0DQ	AP3B1	SNP	Missense_Mutation	5	77385315	C	A	20	59
BRCA	TCGA-BH-A0DQ	PERP	SNP	Missense_Mutation	6	138413301	C	T	23	96
BRCA	TCGA-BH-A0DQ	CDYL	SNP	Missense_Mutation	6	4892446	A	G	10	91
BRCA	TCGA-BH-A0DQ	NOD1	SNP	Missense_Mutation	7	30491714	C	T	28	73
BRCA	TCGA-BH-A0DQ	CSMD3	SNP	Missense_Mutation	8	113564901	G	C	33	99
BRCA	TCGA-BH-A0DS	IER5	SNP	Silent	1	181058081	C	T	32	69
BRCA	TCGA-BH-A0DS	PIK3C2B	SNP	Silent	1	204394861	G	A	41	52
BRCA	TCGA-BH-A0DS	MIA3	SNP	Silent	1	222803199	C	T	18	49
BRCA	TCGA-BH-A0DS	GGPS1	SNP	Silent	1	235505826	A	G	8	49
BRCA	TCGA-BH-A0DS	HPDL	SNP	Silent	1	45792976	G	C	39	7
BRCA	TCGA-BH-A0DS	ZNF644	SNP	Nonsense_Mutation	1	91405737	C	A	29	90
BRCA	TCGA-BH-A0DS	DCLRE1C	SNP	Missense_Mutation	10	14961809	A	G	9	61
BRCA	TCGA-BH-A0DS	PITRM1	SNP	Silent	10	3208485	C	T	19	9
BRCA	TCGA-BH-A0DS	GATA3	INS	Frame_Shift_Ins	10	8115733	-	CATCCAGACC	42	100
BRCA	TCGA-BH-A0DS	LRIT1	SNP	Silent	10	85991725	A	G	5	52
BRCA	TCGA-BH-A0DS	SH2B3	SNP	Missense_Mutation	12	111885304	C	T	27	58
BRCA	TCGA-BH-A0DS	NCKAP1L	SNP	Missense_Mutation	12	54925050	G	A	39	69
BRCA	TCGA-BH-A0DS	TTLL5	SNP	Missense_Mutation	14	76232419	G	A	34	65
BRCA	TCGA-BH-A0DS	UNC79	SNP	Silent	14	94088208	C	T	19	41
BRCA	TCGA-BH-A0DS	BRCA1	SNP	Missense_Mutation	17	41199695	T	A	55	71
BRCA	TCGA-BH-A0DS	LUC7L3	SNP	Missense_Mutation	17	48822101	G	A	39	100
BRCA	TCGA-BH-A0DS	SMCHD1	SNP	Missense_Mutation	18	2722567	G	T	48	76
BRCA	TCGA-BH-A0DS	ZNF44	SNP	Splice_site	19	12385848	C	G	30	58
BRCA	TCGA-BH-A0DS	MYH14	SNP	Missense_Mutation	19	50753926	T	C	60	84
BRCA	TCGA-BH-A0DS	IL36RN	SNP	Missense_Mutation	2	113819727	C	T	31	64
BRCA	TCGA-BH-A0DS	TRPM8	SNP	Nonsense_Mutation	2	234878392	G	A	41	87
BRCA	TCGA-BH-A0DS	RPL23AP32	SNP	Missense_Mutation	2	54756755	A	C	3	59
BRCA	TCGA-BH-A0DS	SIRPA	SNP	Missense_Mutation	20	1902268	G	A	40	63
BRCA	TCGA-BH-A0DS	XKR7	SNP	Missense_Mutation	20	30584668	G	A	38	84
BRCA	TCGA-BH-A0DS	HNF4A	SNP	Silent	20	43031282	G	A	41	52
BRCA	TCGA-BH-A0DS	AKAP14	SNP	Silent	23	119037537	C	T	19	27
BRCA	TCGA-BH-A0DS	FAM123B	SNP	Missense_Mutation	23	63411758	C	T	18	79
BRCA	TCGA-BH-A0DS	IQCF1	SNP	Missense_Mutation	3	51929268	G	A	37	53
BRCA	TCGA-BH-A0DS	DNAH1	SNP	Missense_Mutation	3	52417430	T	A	50	89
BRCA	TCGA-BH-A0DS	CORIN	SNP	Missense_Mutation	4	47839941	G	A	39	49
BRCA	TCGA-BH-A0DS	PCDHB11	SNP	Missense_Mutation	5	140581301	C	T	27	67
BRCA	TCGA-BH-A0DS	GRK6	SNP	Silent	5	176859087	C	T	27	61
BRCA	TCGA-BH-A0DS	RAB3C	SNP	Silent	5	58120940	C	T	19	45
BRCA	TCGA-BH-A0DS	ESR1	SNP	Missense_Mutation	6	152201810	C	T	30	100
BRCA	TCGA-BH-A0DS	HIST1H2BB	SNP	Missense_Mutation	6	26043672	C	T	31	98
BRCA	TCGA-BH-A0DS	VWA7	SNP	Silent	6	31734300	C	T	23	48
BRCA	TCGA-BH-A0DS	CREB5	SNP	Silent	7	28848830	G	A	34	80
BRCA	TCGA-BH-A0DS	RIMS2	SNP	Missense_Mutation	8	104933950	A	G	14	93
BRCA	TCGA-BH-A0DS	PPP2CB	SNP	Missense_Mutation	8	30651456	G	A	37	74
BRCA	TCGA-BH-A0DS	STAU2	DEL	Frame_Shift_Del	8	74585370	A	-	13	91
BRCA	TCGA-BH-A0DS	KIF27	SNP	Missense_Mutation	9	86465140	G	A	40	69
BRCA	TCGA-BH-A0DS	PTCH1	SNP	Missense_Mutation	9	98218641	C	T	23	96
BRCA	TCGA-BH-A0DT	LOC100287102	INS	Frame_Shift_Ins	1	13417	-	GAGA	23	57
BRCA	TCGA-BH-A0DT	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-BH-A0DT	CACNA1C	SNP	Silent	12	2800326	G	A	35	63
BRCA	TCGA-BH-A0DT	RPAP3	SNP	Missense_Mutation	12	48091472	C	A	31	62
BRCA	TCGA-BH-A0DT	CBFB	SNP	Missense_Mutation	16	67063313	G	A	46	81
BRCA	TCGA-BH-A0DT	NOL10	SNP	Missense_Mutation	2	10729809	A	T	8	50
BRCA	TCGA-BH-A0DT	MTA3	SNP	Missense_Mutation	2	42909567	A	C	10	48
BRCA	TCGA-BH-A0DT	DNAH6	SNP	Missense_Mutation	2	84784910	C	T	30	57
BRCA	TCGA-BH-A0DT	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-BH-A0DT	BMPR1B	DEL	Frame_Shift_Del	4	96045009	CTGT	-	20	75
BRCA	TCGA-BH-A0DT	NUP155	SNP	Missense_Mutation	5	37314414	T	G	64	57
BRCA	TCGA-BH-A0DT	MAP3K1	DEL	Frame_Shift_Del	5	56160697	CTAA	-	24	90
BRCA	TCGA-BH-A0DT	MAP3K1	INS	Frame_Shift_Ins	5	56161690	-	T	40	94
BRCA	TCGA-BH-A0DT	RNF180	SNP	Missense_Mutation	5	63510190	C	T	29	54
BRCA	TCGA-BH-A0DT	EGFR	SNP	Silent	7	55266456	C	T	19	36
BRCA	TCGA-BH-A0DV	NUAK2	SNP	Missense_Mutation	1	205274440	C	A	18	88
BRCA	TCGA-BH-A0DV	RSAD1	SNP	Silent	17	48557115	G	A	43	54
BRCA	TCGA-BH-A0DV	SHANK1	SNP	Missense_Mutation	19	51165616	C	A	26	68
BRCA	TCGA-BH-A0DV	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-BH-A0DV	MLL3	DEL	Splice_Site	7	151859200	A	-	14	83
BRCA	TCGA-BH-A0DX	SCAMP3	SNP	Missense_Mutation	1	155228722	G	C	33	61
BRCA	TCGA-BH-A0DX	KIRREL	SNP	Missense_Mutation	1	158058164	G	A	47	82
BRCA	TCGA-BH-A0DX	CROCC	SNP	Missense_Mutation	1	17273343	G	C	33	74
BRCA	TCGA-BH-A0DX	NUCKS1	SNP	Missense_Mutation	1	205689755	G	A	45	78
BRCA	TCGA-BH-A0DX	CSF3R	SNP	Missense_Mutation	1	36933504	G	C	33	43
BRCA	TCGA-BH-A0DX	WDR63	SNP	Missense_Mutation	1	85560164	C	A	29	55
BRCA	TCGA-BH-A0DX	GUCY1A2	SNP	Missense_Mutation	11	106680934	G	A	33	99
BRCA	TCGA-BH-A0DX	BCL9L	SNP	Silent	11	118772067	C	T	29	61
BRCA	TCGA-BH-A0DX	CCDC15	SNP	Missense_Mutation	11	124856675	C	T	29	52
BRCA	TCGA-BH-A0DX	ANO5	SNP	Missense_Mutation	11	22272388	C	T	29	97
BRCA	TCGA-BH-A0DX	EXT2	SNP	Missense_Mutation	11	44228348	C	T	32	71
BRCA	TCGA-BH-A0DX	OR5M1	SNP	Silent	11	56380151	G	T	33	47
BRCA	TCGA-BH-A0DX	CCDC87	DEL	In_Frame_Del	11	66358631	TCT	-	54	71
BRCA	TCGA-BH-A0DX	MTUS2	SNP	Silent	13	29933532	C	T	27	52
BRCA	TCGA-BH-A0DX	NEK5	SNP	Missense_Mutation	13	52667302	C	A	29	64
BRCA	TCGA-BH-A0DX	DIS3	SNP	Missense_Mutation	13	73348184	A	G	14	63
BRCA	TCGA-BH-A0DX	PACS2	SNP	Missense_Mutation	14	105843115	C	T	31	73
BRCA	TCGA-BH-A0DX	TTC5	SNP	Missense_Mutation	14	20757805	G	A	37	72
BRCA	TCGA-BH-A0DX	ACIN1	SNP	Silent	14	23559213	C	T	21	61
BRCA	TCGA-BH-A0DX	MYH6	SNP	Missense_Mutation	14	23858207	G	A	38	56
BRCA	TCGA-BH-A0DX	MBIP	SNP	Silent	14	36781172	G	A	40	51
BRCA	TCGA-BH-A0DX	LRR1	SNP	Nonsense_Mutation	14	50065856	C	T	29	54
BRCA	TCGA-BH-A0DX	LOC100133063	SNP	Missense_Mutation	15	21286656	C	T	30	62
BRCA	TCGA-BH-A0DX	RYR3	SNP	Missense_Mutation	15	34032055	G	C	37	72
BRCA	TCGA-BH-A0DX	UBN1	SNP	Silent	16	4923065	C	T	29	60
BRCA	TCGA-BH-A0DX	ADCY7	SNP	Missense_Mutation	16	50345963	G	A	38	98
BRCA	TCGA-BH-A0DX	NLRC5	SNP	Missense_Mutation	16	57060870	G	A	48	90
BRCA	TCGA-BH-A0DX	ENSG00000154898	SNP	Nonsense_Mutation	17	20242871	C	T	25	43
BRCA	TCGA-BH-A0DX	MED24	DEL	Splice_Site	17	38179081	TAGTGCGCAGGAA	-	53	77
BRCA	TCGA-BH-A0DX	TRAPPC8	SNP	Nonsense_Mutation	18	29470718	G	A	37	78
BRCA	TCGA-BH-A0DX	IL28B	SNP	Missense_Mutation	19	39734315	G	A	40	41
BRCA	TCGA-BH-A0DX	CLASRP	SNP	Missense_Mutation	19	45574072	C	T	30	63
BRCA	TCGA-BH-A0DX	NLRP2	SNP	Missense_Mutation	19	55505775	G	C	45	55
BRCA	TCGA-BH-A0DX	PPP6R1	SNP	Silent	19	55743172	G	A	45	60
BRCA	TCGA-BH-A0DX	DUS3L	SNP	Missense_Mutation	19	5787632	C	A	19	70
BRCA	TCGA-BH-A0DX	IL18R1	SNP	Missense_Mutation	2	102988423	C	G	29	43
BRCA	TCGA-BH-A0DX	DPP4	SNP	Missense_Mutation	2	162890159	C	G	30	90
BRCA	TCGA-BH-A0DX	TTN	SNP	Missense_Mutation	2	179471955	C	T	21	100
BRCA	TCGA-BH-A0DX	TTN	SNP	Missense_Mutation	2	179615735	C	G	29	61
BRCA	TCGA-BH-A0DX	CYP20A1	SNP	Missense_Mutation	2	204116801	C	T	32	69
BRCA	TCGA-BH-A0DX	EPAS1	SNP	Missense_Mutation	2	46574149	C	T	30	85
BRCA	TCGA-BH-A0DX	NRXN1	SNP	Missense_Mutation	2	51254720	C	T	30	100
BRCA	TCGA-BH-A0DX	PDYN	SNP	Missense_Mutation	20	1961312	G	T	46	45
BRCA	TCGA-BH-A0DX	ITGB2	SNP	Nonsense_Mutation	21	46319038	C	A	29	95
BRCA	TCGA-BH-A0DX	AFF2	SNP	Missense_Mutation	23	148037760	C	A	25	92
BRCA	TCGA-BH-A0DX	SPIN2B	SNP	Missense_Mutation	23	57146372	G	C	47	81
BRCA	TCGA-BH-A0DX	RUVBL1	SNP	Missense_Mutation	3	127816231	C	T	29	100
BRCA	TCGA-BH-A0DX	TOPBP1	SNP	Missense_Mutation	3	133335748	G	A	45	53
BRCA	TCGA-BH-A0DX	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-BH-A0DX	MAP3K13	SNP	Missense_Mutation	3	185198193	C	T	19	85
BRCA	TCGA-BH-A0DX	SCN11A	SNP	Missense_Mutation	3	38962717	G	A	40	93
BRCA	TCGA-BH-A0DX	ZNF621	SNP	Missense_Mutation	3	40573701	G	A	41	89
BRCA	TCGA-BH-A0DX	ZNF445	SNP	Missense_Mutation	3	44489889	G	A	45	67
BRCA	TCGA-BH-A0DX	KIF15	SNP	Missense_Mutation	3	44893829	G	A	45	74
BRCA	TCGA-BH-A0DX	DNAH1	SNP	Silent	3	52396484	C	T	19	42
BRCA	TCGA-BH-A0DX	TBC1D9	SNP	Nonsense_Mutation	4	141598222	G	T	44	72
BRCA	TCGA-BH-A0DX	FAT1	SNP	Missense_Mutation	4	187519128	C	G	32	56
BRCA	TCGA-BH-A0DX	PCDHA10	SNP	Missense_Mutation	5	140236913	G	A	39	51
BRCA	TCGA-BH-A0DX	PARK2	SNP	Missense_Mutation	6	161969999	C	A	17	76
BRCA	TCGA-BH-A0DX	THBS2	SNP	Missense_Mutation	6	169626349	C	T	29	98
BRCA	TCGA-BH-A0DX	ADRA1A	SNP	Missense_Mutation	8	26623598	C	A	25	51
BRCA	TCGA-BH-A0DX	GRIN3A	SNP	Missense_Mutation	9	104499768	G	A	43	93
BRCA	TCGA-BH-A0DX	PRRC2B	SNP	Missense_Mutation	9	134351790	G	A	33	97
BRCA	TCGA-BH-A0DX	DDX31	SNP	Missense_Mutation	9	135537878	T	G	51	29
BRCA	TCGA-BH-A0DX	NXNL2	SNP	Silent	9	91159324	C	G	21	56
BRCA	TCGA-BH-A0DZ	MTOR	SNP	Missense_Mutation	1	11317097	G	C	33	96
BRCA	TCGA-BH-A0DZ	FAM46C	SNP	Silent	1	118166486	C	T	29	85
BRCA	TCGA-BH-A0DZ	NOTCH2	SNP	Silent	1	120484367	C	T	32	61
BRCA	TCGA-BH-A0DZ	FLG	SNP	Missense_Mutation	1	152279083	C	G	32	44
BRCA	TCGA-BH-A0DZ	MEX3A	SNP	Missense_Mutation	1	156046487	G	A	35	70
BRCA	TCGA-BH-A0DZ	FCRL3	SNP	Missense_Mutation	1	157659599	C	T	31	49
BRCA	TCGA-BH-A0DZ	ATP1A4	SNP	Missense_Mutation	1	160136489	G	C	45	61
BRCA	TCGA-BH-A0DZ	ARHGAP30	SNP	Silent	1	161026205	G	C	45	73
BRCA	TCGA-BH-A0DZ	OLFML2B	SNP	Silent	1	161970068	G	A	33	64
BRCA	TCGA-BH-A0DZ	SPEN	SNP	Silent	1	16260889	G	A	45	63
BRCA	TCGA-BH-A0DZ	GORAB	SNP	Silent	1	170501403	G	C	45	63
BRCA	TCGA-BH-A0DZ	FMO2	SNP	Missense_Mutation	1	171154948	G	C	33	57
BRCA	TCGA-BH-A0DZ	SUCO	SNP	Missense_Mutation	1	172558405	G	C	45	82
BRCA	TCGA-BH-A0DZ	CROCC	SNP	Missense_Mutation	1	17292567	C	A	18	43
BRCA	TCGA-BH-A0DZ	CEP350	SNP	Missense_Mutation	1	180034352	G	A	45	97
BRCA	TCGA-BH-A0DZ	DENND1B	SNP	Missense_Mutation	1	197479960	G	C	33	71
BRCA	TCGA-BH-A0DZ	KIF14	SNP	Missense_Mutation	1	200586951	G	C	41	33
BRCA	TCGA-BH-A0DZ	PKP1	SNP	Missense_Mutation	1	201292174	G	C	33	95
BRCA	TCGA-BH-A0DZ	NAV1	SNP	Missense_Mutation	1	201751591	G	A	48	100
BRCA	TCGA-BH-A0DZ	USH2A	SNP	Missense_Mutation	1	216373262	G	A	45	61
BRCA	TCGA-BH-A0DZ	CAPN2	SNP	Silent	1	223940585	G	A	33	61
BRCA	TCGA-BH-A0DZ	COX20	SNP	Missense_Mutation	1	245006446	G	C	45	57
BRCA	TCGA-BH-A0DZ	OR14I1	SNP	Silent	1	248845114	C	T	28	51
BRCA	TCGA-BH-A0DZ	CEP85	SNP	Missense_Mutation	1	26603638	G	C	33	71
BRCA	TCGA-BH-A0DZ	LCK	SNP	Missense_Mutation	1	32740653	G	C	45	64
BRCA	TCGA-BH-A0DZ	INPP5B	SNP	Missense_Mutation	1	38345821	C	G	32	100
BRCA	TCGA-BH-A0DZ	NFYC	SNP	Missense_Mutation	1	41213269	G	A	33	95
BRCA	TCGA-BH-A0DZ	LRRC41	SNP	Missense_Mutation	1	46763977	C	T	29	82
BRCA	TCGA-BH-A0DZ	CYP4X1	SNP	Missense_Mutation	1	47501739	T	G	64	47
BRCA	TCGA-BH-A0DZ	HOOK1	SNP	Missense_Mutation	1	60336717	G	A	45	77
BRCA	TCGA-BH-A0DZ	SFXN2	SNP	Silent	10	104486423	C	T	31	50
BRCA	TCGA-BH-A0DZ	FAM160B1	SNP	Missense_Mutation	10	116593004	C	T	21	100
BRCA	TCGA-BH-A0DZ	CCDC172	SNP	Missense_Mutation	10	118138002	G	A	33	80
BRCA	TCGA-BH-A0DZ	ZNF248	SNP	Missense_Mutation	10	38121754	C	G	29	54
BRCA	TCGA-BH-A0DZ	ZNF248	SNP	Missense_Mutation	10	38121798	C	T	32	66
BRCA	TCGA-BH-A0DZ	ASAH2	SNP	Silent	10	52003088	C	T	32	82
BRCA	TCGA-BH-A0DZ	NUDT13	SNP	Missense_Mutation	10	74874153	G	C	41	52
BRCA	TCGA-BH-A0DZ	FUT11	SNP	Silent	10	75532727	C	G	32	51
BRCA	TCGA-BH-A0DZ	IFIT2	SNP	Missense_Mutation	10	91066299	G	A	45	50
BRCA	TCGA-BH-A0DZ	KIF11	SNP	Missense_Mutation	10	94366119	G	A	45	100
BRCA	TCGA-BH-A0DZ	AVPI1	SNP	Missense_Mutation	10	99439583	G	A	37	66
BRCA	TCGA-BH-A0DZ	CNTN5	SNP	Missense_Mutation	11	100064234	G	C	33	89
BRCA	TCGA-BH-A0DZ	ARHGAP20	SNP	Missense_Mutation	11	110450435	C	T	21	51
BRCA	TCGA-BH-A0DZ	OR8D1	SNP	Silent	11	124180243	G	C	33	46
BRCA	TCGA-BH-A0DZ	SRPR	SNP	Nonsense_Mutation	11	126136689	G	A	45	75
BRCA	TCGA-BH-A0DZ	SRPR	SNP	Missense_Mutation	11	126137590	G	C	41	57
BRCA	TCGA-BH-A0DZ	SRPR	SNP	Missense_Mutation	11	126137924	C	T	30	96
BRCA	TCGA-BH-A0DZ	AGBL2	SNP	Missense_Mutation	11	47731963	C	G	29	53
BRCA	TCGA-BH-A0DZ	OR56A1	SNP	Missense_Mutation	11	6048366	G	C	33	58
BRCA	TCGA-BH-A0DZ	FADS2	SNP	Missense_Mutation	11	61583860	C	T	29	55
BRCA	TCGA-BH-A0DZ	CABP2	SNP	Silent	11	67287358	G	A	45	71
BRCA	TCGA-BH-A0DZ	ALDH3B2	SNP	Missense_Mutation	11	67431978	G	C	33	72
BRCA	TCGA-BH-A0DZ	IL18BP	SNP	Splice_site	11	71712941	G	T	45	55
BRCA	TCGA-BH-A0DZ	NR1H4	SNP	Silent	12	100928777	G	C	45	68
BRCA	TCGA-BH-A0DZ	NFYB	SNP	Silent	12	104517031	C	A	29	59
BRCA	TCGA-BH-A0DZ	C12orf51	SNP	Missense_Mutation	12	112669495	C	T	32	99
BRCA	TCGA-BH-A0DZ	DTX1	SNP	Silent	12	113515419	C	T	29	67
BRCA	TCGA-BH-A0DZ	HPD	SNP	Silent	12	122294305	G	A	38	25
BRCA	TCGA-BH-A0DZ	HCAR1	SNP	Silent	12	123214247	G	T	37	61
BRCA	TCGA-BH-A0DZ	C12orf36	SNP	Missense_Mutation	12	13529169	C	G	32	52
BRCA	TCGA-BH-A0DZ	ADIPOR2	SNP	Translation_Start_Site	12	1863507	C	G	30	76
BRCA	TCGA-BH-A0DZ	PFKM	SNP	Nonsense_Mutation	12	48539433	C	A	29	99
BRCA	TCGA-BH-A0DZ	C12orf66	SNP	Silent	12	64609478	G	A	45	59
BRCA	TCGA-BH-A0DZ	CLSTN3	SNP	Missense_Mutation	12	7294698	G	C	33	61
BRCA	TCGA-BH-A0DZ	NAV3	SNP	Nonsense_Mutation	12	78598796	C	T	29	70
BRCA	TCGA-BH-A0DZ	NALCN	SNP	Missense_Mutation	13	101910796	C	T	30	97
BRCA	TCGA-BH-A0DZ	PDS5B	SNP	Missense_Mutation	13	33252979	G	A	45	100
BRCA	TCGA-BH-A0DZ	ELF1	SNP	Missense_Mutation	13	41515065	C	G	32	54
BRCA	TCGA-BH-A0DZ	ELF1	SNP	Nonsense_Mutation	13	41515219	G	C	45	86
BRCA	TCGA-BH-A0DZ	UGGT2	SNP	Missense_Mutation	13	96589256	C	T	29	54
BRCA	TCGA-BH-A0DZ	OXGR1	SNP	Nonsense_Mutation	13	97639086	G	A	45	71
BRCA	TCGA-BH-A0DZ	TPPP2	SNP	Silent	14	21499252	G	A	33	55
BRCA	TCGA-BH-A0DZ	PSMB11	SNP	Silent	14	23512055	C	T	27	36
BRCA	TCGA-BH-A0DZ	RNF31	SNP	Silent	14	24617199	C	T	29	64
BRCA	TCGA-BH-A0DZ	RNF31	SNP	Silent	14	24617253	C	T	29	49
BRCA	TCGA-BH-A0DZ	RNF31	SNP	Nonsense_Mutation	14	24617260	C	T	29	66
BRCA	TCGA-BH-A0DZ	RABGGTA	SNP	Silent	14	24740088	C	T	32	58
BRCA	TCGA-BH-A0DZ	SOS2	SNP	Missense_Mutation	14	50623790	C	G	32	78
BRCA	TCGA-BH-A0DZ	ZFYVE26	SNP	Missense_Mutation	14	68229412	C	T	31	100
BRCA	TCGA-BH-A0DZ	SIPA1L1	SNP	Missense_Mutation	14	72176230	G	C	33	87
BRCA	TCGA-BH-A0DZ	MLH3	SNP	Missense_Mutation	14	75515335	C	T	30	88
BRCA	TCGA-BH-A0DZ	SPTLC2	SNP	Missense_Mutation	14	77987865	C	G	32	71
BRCA	TCGA-BH-A0DZ	SNW1	SNP	Missense_Mutation	14	78198836	C	A	29	89
BRCA	TCGA-BH-A0DZ	TRIP11	SNP	Missense_Mutation	14	92471025	C	T	32	99
BRCA	TCGA-BH-A0DZ	ATP10A	SNP	Silent	15	25928589	G	A	33	69
BRCA	TCGA-BH-A0DZ	MYEF2	SNP	Missense_Mutation	15	48443305	G	C	33	69
BRCA	TCGA-BH-A0DZ	BBS4	SNP	Silent	15	73024024	C	T	29	87
BRCA	TCGA-BH-A0DZ	ZNF592	SNP	Nonsense_Mutation	15	85326354	G	T	45	95
BRCA	TCGA-BH-A0DZ	NTRK3	SNP	Missense_Mutation	15	88472506	C	G	30	61
BRCA	TCGA-BH-A0DZ	GSPT1	SNP	Missense_Mutation	16	11971338	C	G	32	93
BRCA	TCGA-BH-A0DZ	CACNA1H	SNP	Silent	16	1270974	G	A	47	44
BRCA	TCGA-BH-A0DZ	NDE1	SNP	Missense_Mutation	16	15785109	C	T	30	93
BRCA	TCGA-BH-A0DZ	ARHGAP17	SNP	Missense_Mutation	16	24965944	C	T	30	84
BRCA	TCGA-BH-A0DZ	SRRM2	SNP	Missense_Mutation	16	2815760	G	A	37	80
BRCA	TCGA-BH-A0DZ	MAZ	SNP	Missense_Mutation	16	29819563	C	G	29	59
BRCA	TCGA-BH-A0DZ	PRR14	SNP	Missense_Mutation	16	30667567	G	C	41	55
BRCA	TCGA-BH-A0DZ	RPGRIP1L	SNP	Missense_Mutation	16	53639477	C	G	30	87
BRCA	TCGA-BH-A0DZ	THAP11	SNP	Missense_Mutation	16	67876858	C	T	29	77
BRCA	TCGA-BH-A0DZ	DPEP3	SNP	Silent	16	68014005	G	A	37	30
BRCA	TCGA-BH-A0DZ	NFATC3	SNP	Missense_Mutation	16	68224697	G	C	33	97
BRCA	TCGA-BH-A0DZ	NFATC3	SNP	Missense_Mutation	16	68224886	G	A	45	60
BRCA	TCGA-BH-A0DZ	FTSJD1	SNP	Missense_Mutation	16	71319082	C	G	32	98
BRCA	TCGA-BH-A0DZ	DNAH9	SNP	Missense_Mutation	17	11806120	G	A	37	94
BRCA	TCGA-BH-A0DZ	ZNF286B	SNP	Missense_Mutation	17	18566541	C	T	32	75
BRCA	TCGA-BH-A0DZ	KRT9	SNP	Missense_Mutation	17	39723875	C	T	21	66
BRCA	TCGA-BH-A0DZ	KRT9	SNP	Silent	17	39724461	C	T	24	51
BRCA	TCGA-BH-A0DZ	KRT9	SNP	Silent	17	39724521	C	T	32	49
BRCA	TCGA-BH-A0DZ	KRT9	SNP	Silent	17	39724602	C	T	32	67
BRCA	TCGA-BH-A0DZ	KRT9	SNP	Silent	17	39724823	C	T	24	55
BRCA	TCGA-BH-A0DZ	JUP	SNP	Silent	17	39919553	C	T	29	68
BRCA	TCGA-BH-A0DZ	EFTUD2	SNP	Silent	17	42929858	G	A	37	47
BRCA	TCGA-BH-A0DZ	TRIM37	SNP	Missense_Mutation	17	57139966	G	C	45	99
BRCA	TCGA-BH-A0DZ	RNFT1	SNP	Missense_Mutation	17	58031484	C	G	32	58
BRCA	TCGA-BH-A0DZ	MED13	SNP	Missense_Mutation	17	60023893	G	A	45	95
BRCA	TCGA-BH-A0DZ	MARCH10	SNP	Missense_Mutation	17	60802440	C	T	30	99
BRCA	TCGA-BH-A0DZ	MARCH10	SNP	Silent	17	60821843	C	G	29	58
BRCA	TCGA-BH-A0DZ	TEX2	SNP	Missense_Mutation	17	62272330	C	G	30	54
BRCA	TCGA-BH-A0DZ	KIAA0753	SNP	Missense_Mutation	17	6515265	C	G	32	63
BRCA	TCGA-BH-A0DZ	BPTF	SNP	Missense_Mutation	17	65916216	C	G	29	61
BRCA	TCGA-BH-A0DZ	ABCA8	SNP	Missense_Mutation	17	66881408	C	T	29	47
BRCA	TCGA-BH-A0DZ	FBXO39	SNP	Missense_Mutation	17	6690652	G	A	45	76
BRCA	TCGA-BH-A0DZ	ABCA5	SNP	Missense_Mutation	17	67260917	G	A	45	75
BRCA	TCGA-BH-A0DZ	ABCA5	SNP	Missense_Mutation	17	67260950	G	C	33	81
BRCA	TCGA-BH-A0DZ	KCNJ2	SNP	Missense_Mutation	17	68171693	C	G	31	38
BRCA	TCGA-BH-A0DZ	TP53	SNP	Missense_Mutation	17	7577509	C	G	30	80
BRCA	TCGA-BH-A0DZ	PER1	SNP	Silent	17	8051337	G	A	45	50
BRCA	TCGA-BH-A0DZ	CCDC42	SNP	Missense_Mutation	17	8647906	C	G	32	66
BRCA	TCGA-BH-A0DZ	ANKRD30B	SNP	Missense_Mutation	18	14752623	G	C	33	72
BRCA	TCGA-BH-A0DZ	C18orf25	DEL	In_Frame_Del	18	43795948	TGTAGAACTGGAATCTCAAGTTCAGAA	-	55	68
BRCA	TCGA-BH-A0DZ	DCC	SNP	Missense_Mutation	18	50929215	G	A	40	73
BRCA	TCGA-BH-A0DZ	ZNF439	SNP	Missense_Mutation	19	11978285	C	T	32	72
BRCA	TCGA-BH-A0DZ	C19orf53	SNP	Silent	19	13888907	G	A	47	51
BRCA	TCGA-BH-A0DZ	CC2D1A	SNP	Missense_Mutation	19	14029787	G	C	44	55
BRCA	TCGA-BH-A0DZ	ATP8B3	SNP	Missense_Mutation	19	1783049	G	A	37	38
BRCA	TCGA-BH-A0DZ	TMEM59L	SNP	Missense_Mutation	19	18731260	G	A	37	60
BRCA	TCGA-BH-A0DZ	ZNF492	SNP	Nonsense_Mutation	19	22847268	C	G	29	52
BRCA	TCGA-BH-A0DZ	ZNF554	SNP	Missense_Mutation	19	2832427	C	A	30	50
BRCA	TCGA-BH-A0DZ	SCGB2B2	SNP	Silent	19	35085143	G	A	45	51
BRCA	TCGA-BH-A0DZ	TIMM50	SNP	Missense_Mutation	19	39971368	G	C	37	48
BRCA	TCGA-BH-A0DZ	ZNF780A	SNP	Missense_Mutation	19	40581547	G	C	45	46
BRCA	TCGA-BH-A0DZ	PSG9	SNP	Missense_Mutation	19	43763165	G	C	45	49
BRCA	TCGA-BH-A0DZ	ZNF180	SNP	Silent	19	45001414	G	A	45	57
BRCA	TCGA-BH-A0DZ	LRG1	SNP	Missense_Mutation	19	4538658	C	T	23	40
BRCA	TCGA-BH-A0DZ	IRF2BP1	SNP	Missense_Mutation	19	46388255	C	T	31	92
BRCA	TCGA-BH-A0DZ	TRIM28	SNP	Silent	19	59059687	C	G	29	52
BRCA	TCGA-BH-A0DZ	TRIM28	SNP	Missense_Mutation	19	59059946	C	G	32	76
BRCA	TCGA-BH-A0DZ	REV1	SNP	Silent	2	100065947	C	T	29	59
BRCA	TCGA-BH-A0DZ	GPR17	SNP	Silent	2	128409206	C	T	31	43
BRCA	TCGA-BH-A0DZ	KIF5C	SNP	Silent	2	149806935	C	T	29	88
BRCA	TCGA-BH-A0DZ	PKP4	SNP	Missense_Mutation	2	159488403	G	A	41	64
BRCA	TCGA-BH-A0DZ	ITGB6	SNP	Missense_Mutation	2	160994606	C	G	32	62
BRCA	TCGA-BH-A0DZ	IFIH1	SNP	Silent	2	163139083	G	A	36	76
BRCA	TCGA-BH-A0DZ	COL3A1	SNP	Silent	2	189875538	G	C	45	57
BRCA	TCGA-BH-A0DZ	SPHKAP	SNP	Missense_Mutation	2	228884261	C	G	32	62
BRCA	TCGA-BH-A0DZ	ASXL2	SNP	Missense_Mutation	2	25972681	C	G	30	69
BRCA	TCGA-BH-A0DZ	C2orf16	SNP	Missense_Mutation	2	27801094	C	T	29	53
BRCA	TCGA-BH-A0DZ	EFEMP1	SNP	Splice_Site	2	56144798	A	T	14	84
BRCA	TCGA-BH-A0DZ	SMYD5	SNP	Missense_Mutation	2	73447268	G	C	33	96
BRCA	TCGA-BH-A0DZ	SNRNP200	SNP	Silent	2	96944592	G	A	33	75
BRCA	TCGA-BH-A0DZ	ANKRD36	SNP	Silent	2	97783882	C	T	32	51
BRCA	TCGA-BH-A0DZ	DZANK1	SNP	Missense_Mutation	20	18429657	C	T	29	56
BRCA	TCGA-BH-A0DZ	NINL	SNP	Missense_Mutation	20	25443055	C	A	32	52
BRCA	TCGA-BH-A0DZ	ZNF337	SNP	Missense_Mutation	20	25656844	C	A	20	42
BRCA	TCGA-BH-A0DZ	PDRG1	SNP	Silent	20	30534327	C	A	29	66
BRCA	TCGA-BH-A0DZ	TTI1	SNP	Silent	20	36641850	C	T	29	57
BRCA	TCGA-BH-A0DZ	LPIN3	SNP	Missense_Mutation	20	39985752	C	T	23	84
BRCA	TCGA-BH-A0DZ	TNNC2	SNP	Missense_Mutation	20	44452972	C	G	32	81
BRCA	TCGA-BH-A0DZ	ARFGEF2	SNP	Missense_Mutation	20	47601269	C	G	29	65
BRCA	TCGA-BH-A0DZ	BRWD1	SNP	Missense_Mutation	21	40571393	G	C	33	63
BRCA	TCGA-BH-A0DZ	PDE9A	SNP	Splice_Site	21	44153465	G	A	33	82
BRCA	TCGA-BH-A0DZ	ARVCF	SNP	Splice_Site	22	19959495	C	G	32	88
BRCA	TCGA-BH-A0DZ	CABIN1	SNP	Missense_Mutation	22	24481034	C	G	29	97
BRCA	TCGA-BH-A0DZ	HPS4	SNP	Missense_Mutation	22	26868878	C	G	29	64
BRCA	TCGA-BH-A0DZ	DUSP18	SNP	Silent	22	31059955	G	A	41	60
BRCA	TCGA-BH-A0DZ	EP300	SNP	Missense_Mutation	22	41573738	C	T	32	58
BRCA	TCGA-BH-A0DZ	RANGAP1	SNP	Missense_Mutation	22	41677000	G	C	45	60
BRCA	TCGA-BH-A0DZ	ATXN10	SNP	Missense_Mutation	22	46136266	C	T	29	89
BRCA	TCGA-BH-A0DZ	LUZP4	SNP	Missense_Mutation	23	114524374	C	T	29	45
BRCA	TCGA-BH-A0DZ	MSL3	SNP	Silent	23	11779010	C	G	32	50
BRCA	TCGA-BH-A0DZ	IL13RA1	SNP	Missense_Mutation	23	117895249	C	G	32	49
BRCA	TCGA-BH-A0DZ	RNF113A	SNP	Missense_Mutation	23	119005192	C	T	31	94
BRCA	TCGA-BH-A0DZ	GRIA3	SNP	Silent	23	122528932	G	A	45	64
BRCA	TCGA-BH-A0DZ	MAP7D3	SNP	Missense_Mutation	23	135310810	C	T	32	55
BRCA	TCGA-BH-A0DZ	CSF2RA	SNP	Silent	23	1407734	G	A	37	39
BRCA	TCGA-BH-A0DZ	MAGEC1	SNP	Missense_Mutation	23	140995393	G	A	41	57
BRCA	TCGA-BH-A0DZ	PCYT1B	SNP	Missense_Mutation	23	24580566	C	G	32	60
BRCA	TCGA-BH-A0DZ	FAM47B	SNP	Silent	23	34961041	G	A	37	47
BRCA	TCGA-BH-A0DZ	MED14	SNP	Silent	23	40569291	C	T	32	58
BRCA	TCGA-BH-A0DZ	USP51	SNP	Silent	23	55514740	C	G	29	54
BRCA	TCGA-BH-A0DZ	MTMR8	SNP	Silent	23	63548723	G	A	45	58
BRCA	TCGA-BH-A0DZ	PJA1	SNP	Missense_Mutation	23	68382802	C	T	29	66
BRCA	TCGA-BH-A0DZ	TAF1	SNP	Missense_Mutation	23	70683834	G	A	37	71
BRCA	TCGA-BH-A0DZ	ERCC6L	SNP	Missense_Mutation	23	71426743	C	G	32	62
BRCA	TCGA-BH-A0DZ	KIAA2022	SNP	Missense_Mutation	23	73960911	C	T	29	66
BRCA	TCGA-BH-A0DZ	MAGEE2	SNP	Missense_Mutation	23	75004401	G	C	41	47
BRCA	TCGA-BH-A0DZ	KLHL4	SNP	Missense_Mutation	23	86869457	C	A	32	94
BRCA	TCGA-BH-A0DZ	MYH15	SNP	Missense_Mutation	3	108107918	G	A	37	50
BRCA	TCGA-BH-A0DZ	ARHGAP31	SNP	Missense_Mutation	3	119134755	G	C	33	83
BRCA	TCGA-BH-A0DZ	POLQ	SNP	Missense_Mutation	3	121238843	G	T	33	97
BRCA	TCGA-BH-A0DZ	ILDR1	SNP	Silent	3	121720279	G	A	45	61
BRCA	TCGA-BH-A0DZ	SEMA5B	SNP	Silent	3	122662297	G	T	45	57
BRCA	TCGA-BH-A0DZ	ZXDC	SNP	Silent	3	126185056	G	C	33	60
BRCA	TCGA-BH-A0DZ	VPS8	SNP	Missense_Mutation	3	184543993	C	G	30	95
BRCA	TCGA-BH-A0DZ	MAP3K13	SNP	Silent	3	185165697	G	C	45	54
BRCA	TCGA-BH-A0DZ	GOLGA4	SNP	Nonsense_Mutation	3	37367848	C	T	25	61
BRCA	TCGA-BH-A0DZ	GOLGA4	SNP	Nonsense_Mutation	3	37368485	C	G	29	66
BRCA	TCGA-BH-A0DZ	SCN5A	SNP	Silent	3	38655497	C	T	29	72
BRCA	TCGA-BH-A0DZ	CDCP1	SNP	Silent	3	45134773	G	A	45	55
BRCA	TCGA-BH-A0DZ	FOXP1	SNP	Silent	3	71247211	G	C	45	41
BRCA	TCGA-BH-A0DZ	KIAA1109	SNP	Missense_Mutation	4	123239318	G	C	45	96
BRCA	TCGA-BH-A0DZ	TTC29	SNP	Silent	4	147724765	G	A	33	57
BRCA	TCGA-BH-A0DZ	FGA	SNP	Missense_Mutation	4	155507703	C	A	30	76
BRCA	TCGA-BH-A0DZ	CLRN2	SNP	Silent	4	17528651	G	A	33	71
BRCA	TCGA-BH-A0DZ	SORBS2	SNP	Missense_Mutation	4	186510869	C	T	29	100
BRCA	TCGA-BH-A0DZ	PTTG2	SNP	Missense_Mutation	4	37962331	G	C	33	54
BRCA	TCGA-BH-A0DZ	FAM114A1	SNP	Missense_Mutation	4	38879718	G	A	45	63
BRCA	TCGA-BH-A0DZ	RFC1	SNP	Silent	4	39310356	G	C	45	59
BRCA	TCGA-BH-A0DZ	ZNF721	SNP	Missense_Mutation	4	437193	G	C	45	79
BRCA	TCGA-BH-A0DZ	TXK	SNP	Silent	4	48081956	C	T	32	64
BRCA	TCGA-BH-A0DZ	PAICS	SNP	Missense_Mutation	4	57314891	G	C	45	63
BRCA	TCGA-BH-A0DZ	TBC1D14	SNP	Silent	4	7026815	C	T	30	47
BRCA	TCGA-BH-A0DZ	UGT2B4	SNP	Missense_Mutation	4	70346610	C	G	29	64
BRCA	TCGA-BH-A0DZ	SHROOM3	SNP	Missense_Mutation	4	77357221	G	A	45	82
BRCA	TCGA-BH-A0DZ	FRAS1	SNP	Missense_Mutation	4	79188530	G	A	45	52
BRCA	TCGA-BH-A0DZ	WDFY3	SNP	Splice_Site	4	85762417	C	A	32	100
BRCA	TCGA-BH-A0DZ	HERC5	SNP	Nonsense_Mutation	4	89388332	C	A	29	69
BRCA	TCGA-BH-A0DZ	TRPC7	SNP	Missense_Mutation	5	135549141	G	T	48	57
BRCA	TCGA-BH-A0DZ	CD14	SNP	Splice_Site	5	140012778	C	T	32	53
BRCA	TCGA-BH-A0DZ	CAMK2A	SNP	Missense_Mutation	5	149636190	G	C	41	63
BRCA	TCGA-BH-A0DZ	SLC38A9	SNP	Silent	5	54923793	C	G	29	53
BRCA	TCGA-BH-A0DZ	MAP3K1	SNP	Missense_Mutation	5	56171088	T	C	55	87
BRCA	TCGA-BH-A0DZ	DEPDC1B	SNP	Missense_Mutation	5	59941334	G	A	33	94
BRCA	TCGA-BH-A0DZ	ARSB	SNP	Missense_Mutation	5	78181569	C	T	31	99
BRCA	TCGA-BH-A0DZ	HS3ST5	SNP	Silent	6	114379009	G	A	45	56
BRCA	TCGA-BH-A0DZ	ECHDC1	SNP	Missense_Mutation	6	127648195	G	C	33	52
BRCA	TCGA-BH-A0DZ	KIAA0408	SNP	Missense_Mutation	6	127771455	C	T	29	64
BRCA	TCGA-BH-A0DZ	MAP3K5	SNP	Missense_Mutation	6	136990511	C	T	29	98
BRCA	TCGA-BH-A0DZ	CCDC90A	SNP	Missense_Mutation	6	13801528	C	G	32	72
BRCA	TCGA-BH-A0DZ	UTRN	SNP	Nonsense_Mutation	6	145103087	G	T	45	73
BRCA	TCGA-BH-A0DZ	RMND1	SNP	Missense_Mutation	6	151766844	C	T	30	57
BRCA	TCGA-BH-A0DZ	SYNE1	SNP	Missense_Mutation	6	152642474	C	G	32	97
BRCA	TCGA-BH-A0DZ	FNDC1	SNP	Silent	6	159650875	C	G	29	82
BRCA	TCGA-BH-A0DZ	MLLT4	SNP	Missense_Mutation	6	168352759	G	C	33	70
BRCA	TCGA-BH-A0DZ	NUP153	SNP	Missense_Mutation	6	17637546	C	G	29	62
BRCA	TCGA-BH-A0DZ	KIF13A	SNP	Silent	6	17797021	G	A	33	57
BRCA	TCGA-BH-A0DZ	KIAA0319	SNP	Missense_Mutation	6	24596268	C	G	30	55
BRCA	TCGA-BH-A0DZ	C6orf62	SNP	Splice_site	6	24706365	C	G	32	60
BRCA	TCGA-BH-A0DZ	HIST1H1C	SNP	Missense_Mutation	6	26056039	C	A	32	70
BRCA	TCGA-BH-A0DZ	MAS1L	SNP	Silent	6	29455047	G	A	41	50
BRCA	TCGA-BH-A0DZ	MAS1L	SNP	Missense_Mutation	6	29455193	G	A	33	50
BRCA	TCGA-BH-A0DZ	PRRT1	SNP	Silent	6	32117479	C	T	23	41
BRCA	TCGA-BH-A0DZ	C6orf10	SNP	Silent	6	32261367	C	T	29	50
BRCA	TCGA-BH-A0DZ	DNAH8	SNP	Missense_Mutation	6	38891783	C	G	32	58
BRCA	TCGA-BH-A0DZ	CUL7	SNP	Splice_Site	6	43010724	T	G	55	90
BRCA	TCGA-BH-A0DZ	MEP1A	SNP	Missense_Mutation	6	46806828	G	C	45	52
BRCA	TCGA-BH-A0DZ	PKHD1	SNP	Missense_Mutation	6	51503731	C	G	32	55
BRCA	TCGA-BH-A0DZ	PKHD1	SNP	Missense_Mutation	6	51890550	G	C	41	57
BRCA	TCGA-BH-A0DZ	MLIP	SNP	Silent	6	54066989	C	T	29	54
BRCA	TCGA-BH-A0DZ	FAM83B	SNP	Missense_Mutation	6	54806423	C	T	32	77
BRCA	TCGA-BH-A0DZ	MTO1	SNP	Nonsense_Mutation	6	74192270	G	T	45	58
BRCA	TCGA-BH-A0DZ	MAP3K7	SNP	Missense_Mutation	6	91260217	C	T	29	77
BRCA	TCGA-BH-A0DZ	COQ3	SNP	Missense_Mutation	6	99817588	G	A	41	74
BRCA	TCGA-BH-A0DZ	RELN	SNP	Missense_Mutation	7	103322585	C	T	32	91
BRCA	TCGA-BH-A0DZ	DOCK4	SNP	Silent	7	111575671	C	T	32	70
BRCA	TCGA-BH-A0DZ	CHPF2	SNP	Silent	7	150932659	C	T	29	54
BRCA	TCGA-BH-A0DZ	FERD3L	SNP	Silent	7	19184707	C	T	32	63
BRCA	TCGA-BH-A0DZ	DNAH11	SNP	Missense_Mutation	7	21813441	G	C	45	66
BRCA	TCGA-BH-A0DZ	TAX1BP1	SNP	Silent	7	27839637	G	A	45	73
BRCA	TCGA-BH-A0DZ	BBS9	SNP	Silent	7	33545131	C	T	29	52
BRCA	TCGA-BH-A0DZ	C7orf10	SNP	Splice_Site	7	40220545	G	C	33	84
BRCA	TCGA-BH-A0DZ	POM121	SNP	Missense_Mutation	7	72397433	G	C	33	65
BRCA	TCGA-BH-A0DZ	ACN9	SNP	Missense_Mutation	7	96747105	C	T	26	93
BRCA	TCGA-BH-A0DZ	VPS13B	SNP	Missense_Mutation	8	100866400	G	A	45	97
BRCA	TCGA-BH-A0DZ	ABRA	SNP	Silent	8	107781891	C	T	29	65
BRCA	TCGA-BH-A0DZ	ADCY8	SNP	Missense_Mutation	8	131826325	C	T	31	84
BRCA	TCGA-BH-A0DZ	COL22A1	SNP	Missense_Mutation	8	139606409	G	A	39	97
BRCA	TCGA-BH-A0DZ	PHYHIP	SNP	Missense_Mutation	8	22084524	C	A	28	56
BRCA	TCGA-BH-A0DZ	WRN	SNP	Silent	8	30982427	C	T	29	72
BRCA	TCGA-BH-A0DZ	UNC5D	SNP	Silent	8	35542203	C	G	29	64
BRCA	TCGA-BH-A0DZ	CHD7	SNP	Missense_Mutation	8	61654206	A	G	16	68
BRCA	TCGA-BH-A0DZ	RNF20	SNP	Missense_Mutation	9	104313984	C	T	29	99
BRCA	TCGA-BH-A0DZ	ST6GALNAC6	SNP	Silent	9	130653020	G	A	41	99
BRCA	TCGA-BH-A0DZ	CERCAM	SNP	Silent	9	131196437	G	A	33	61
BRCA	TCGA-BH-A0DZ	PTGDS	SNP	Missense_Mutation	9	139873688	G	A	45	64
BRCA	TCGA-BH-A0DZ	IFNA1	SNP	Missense_Mutation	9	21441024	G	A	33	55
BRCA	TCGA-BH-A0DZ	CCL21	SNP	Missense_Mutation	9	34709557	C	T	24	48
BRCA	TCGA-BH-A0DZ	RANBP6	SNP	Missense_Mutation	9	6015088	C	G	32	61
BRCA	TCGA-BH-A0DZ	TMEM252	SNP	Silent	9	71155566	C	T	29	64
BRCA	TCGA-BH-A0DZ	PCSK5	SNP	Missense_Mutation	9	78804645	G	C	41	95
BRCA	TCGA-BH-A0E0	RPTN	SNP	Missense_Mutation	1	152128599	C	A	24	51
BRCA	TCGA-BH-A0E0	APCS	SNP	Missense_Mutation	1	159558311	A	G	3	52
BRCA	TCGA-BH-A0E0	EPRS	INS	In_Frame_Ins	1	220162120	-	ATC	45	75
BRCA	TCGA-BH-A0E0	COL8A2	SNP	Missense_Mutation	1	36563540	A	G	11	90
BRCA	TCGA-BH-A0E0	ZC3H12A	SNP	Missense_Mutation	1	37949096	G	A	47	77
BRCA	TCGA-BH-A0E0	C1orf122	SNP	Missense_Mutation	1	38274781	C	A	30	63
BRCA	TCGA-BH-A0E0	TUBGCP2	SNP	Silent	10	135106688	C	T	23	34
BRCA	TCGA-BH-A0E0	SKIDA1	SNP	Missense_Mutation	10	21805245	C	G	23	58
BRCA	TCGA-BH-A0E0	WAC	SNP	Missense_Mutation	10	28905131	A	G	4	80
BRCA	TCGA-BH-A0E0		SNP	Missense_Mutation	10	30998304	G	A	40	50
BRCA	TCGA-BH-A0E0	VSTM4	SNP	Missense_Mutation	10	50285301	G	C	37	54
BRCA	TCGA-BH-A0E0	DPAGT1	SNP	Missense_Mutation	11	118967995	G	A	35	72
BRCA	TCGA-BH-A0E0	ODZ4	SNP	Silent	11	78437179	C	A	19	49
BRCA	TCGA-BH-A0E0	FAM186A	SNP	Missense_Mutation	12	50747920	T	C	64	49
BRCA	TCGA-BH-A0E0	WNK1	SNP	Missense_Mutation	12	977147	C	G	23	98
BRCA	TCGA-BH-A0E0	FAM63B	SNP	Missense_Mutation	15	59063938	C	T	26	75
BRCA	TCGA-BH-A0E0	TUFM	SNP	Missense_Mutation	16	28855746	C	T	19	57
BRCA	TCGA-BH-A0E0	HYDIN	SNP	Missense_Mutation	16	70916787	C	T	31	71
BRCA	TCGA-BH-A0E0	ACE	DEL	Frame_Shift_Del	17	61557164	C	-	19	45
BRCA	TCGA-BH-A0E0	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-BH-A0E0	LAMA1	SNP	Nonsense_Mutation	18	7050726	A	C	4	52
BRCA	TCGA-BH-A0E0	ZNF516	SNP	Missense_Mutation	18	74091656	C	A	28	50
BRCA	TCGA-BH-A0E0	ZNF808	SNP	Missense_Mutation	19	53056786	A	G	4	69
BRCA	TCGA-BH-A0E0	ZNF470	SNP	Silent	19	57089741	T	C	56	50
BRCA	TCGA-BH-A0E0	ZNF548	SNP	Missense_Mutation	19	57910907	G	C	33	74
BRCA	TCGA-BH-A0E0	SNTG2	SNP	Silent	2	1204905	G	A	39	47
BRCA	TCGA-BH-A0E0	NEB	SNP	Missense_Mutation	2	152501038	G	A	41	66
BRCA	TCGA-BH-A0E0	ALK	SNP	Nonsense_Mutation	2	29432665	G	A	39	74
BRCA	TCGA-BH-A0E0	MXRA5	SNP	Missense_Mutation	23	3238686	T	G	60	40
BRCA	TCGA-BH-A0E0	MXRA5	SNP	Missense_Mutation	23	3239606	A	T	3	49
BRCA	TCGA-BH-A0E0	SLC16A2	SNP	Missense_Mutation	23	73744298	G	A	38	96
BRCA	TCGA-BH-A0E0	SCN11A	SNP	Missense_Mutation	3	38941399	G	A	38	63
BRCA	TCGA-BH-A0E0	RHOA	SNP	Missense_Mutation	3	49413010	G	A	39	52
BRCA	TCGA-BH-A0E0	ARSB	SNP	Missense_Mutation	5	78181573	C	T	19	46
BRCA	TCGA-BH-A0E0	SYNE1	SNP	Missense_Mutation	6	152472809	C	T	19	100
BRCA	TCGA-BH-A0E0	FGD2	SNP	Missense_Mutation	6	36976680	G	A	37	41
BRCA	TCGA-BH-A0E0	TNFRSF21	SNP	Silent	6	47221133	G	A	40	43
BRCA	TCGA-BH-A0E0	MUC17	SNP	Missense_Mutation	7	100683830	A	T	3	56
BRCA	TCGA-BH-A0E0	SDK1	SNP	Silent	7	4285428	A	C	7	15
BRCA	TCGA-BH-A0E0	RABGAP1	SNP	Nonsense_Mutation	9	125746848	G	T	41	68
BRCA	TCGA-BH-A0E0	NELF	SNP	Silent	9	140344399	A	T	9	46
BRCA	TCGA-BH-A0E0	DAPK1	SNP	Missense_Mutation	9	90321914	C	T	31	71
BRCA	TCGA-BH-A0E1	UFC1	SNP	Missense_Mutation	1	161127913	G	C	44	94
BRCA	TCGA-BH-A0E1	DDR2	SNP	Missense_Mutation	1	162731228	G	C	33	63
BRCA	TCGA-BH-A0E1	SERPINC1	SNP	Missense_Mutation	1	173886366	G	A	33	57
BRCA	TCGA-BH-A0E1	UBR4	SNP	Missense_Mutation	1	19468234	C	G	32	60
BRCA	TCGA-BH-A0E1	PCNXL2	SNP	Missense_Mutation	1	233344363	C	G	29	84
BRCA	TCGA-BH-A0E1	OSCP1	SNP	Missense_Mutation	1	36915874	C	G	32	92
BRCA	TCGA-BH-A0E1	OR8H2	SNP	Silent	11	55872938	C	T	32	49
BRCA	TCGA-BH-A0E1	TAS2R10	SNP	Nonsense_Mutation	12	10978407	A	C	16	42
BRCA	TCGA-BH-A0E1	PRPF40B	DEL	Frame_Shift_Del	12	50025689	CGGTGCCTGTC	-	27	61
BRCA	TCGA-BH-A0E1	KRT71	SNP	Missense_Mutation	12	52940265	G	A	34	67
BRCA	TCGA-BH-A0E1	NCAPD2	SNP	Silent	12	6630248	C	G	32	52
BRCA	TCGA-BH-A0E1	CHD4	SNP	Missense_Mutation	12	6702280	G	A	37	54
BRCA	TCGA-BH-A0E1	ISM2	SNP	Missense_Mutation	14	77948868	T	C	62	65
BRCA	TCGA-BH-A0E1	ITGA11	SNP	Silent	15	68631959	G	T	37	22
BRCA	TCGA-BH-A0E1	MAPK3	SNP	Missense_Mutation	16	30129759	G	A	38	84
BRCA	TCGA-BH-A0E1	TMEM106A	SNP	Silent	17	41368593	T	C	56	55
BRCA	TCGA-BH-A0E1	VAMP2	SNP	Silent	17	8064834	G	A	45	52
BRCA	TCGA-BH-A0E1	DDX49	SNP	Missense_Mutation	19	19031392	G	A	37	74
BRCA	TCGA-BH-A0E1	APOB	SNP	Missense_Mutation	2	21236250	C	T	31	44
BRCA	TCGA-BH-A0E1	ALK	SNP	Silent	2	29917810	C	T	32	61
BRCA	TCGA-BH-A0E1	TLR7	SNP	Missense_Mutation	23	12903835	C	T	24	83
BRCA	TCGA-BH-A0E1	DCAF8L2	SNP	Silent	23	27765579	C	T	31	48
BRCA	TCGA-BH-A0E1	DGKG	SNP	Silent	3	185985540	C	T	19	43
BRCA	TCGA-BH-A0E1	PPARGC1A	SNP	Missense_Mutation	4	23814725	C	T	28	67
BRCA	TCGA-BH-A0E1	TMEM167A	SNP	Missense_Mutation	5	82352947	C	T	20	61
BRCA	TCGA-BH-A0E1	SIM1	SNP	Silent	6	100897266	G	A	40	46
BRCA	TCGA-BH-A0E1	MTHFD1L	SNP	Splice_site	6	151247259	G	A	45	99
BRCA	TCGA-BH-A0E1	ZBTB22	SNP	Missense_Mutation	6	33284027	C	T	32	72
BRCA	TCGA-BH-A0E1	ESYT2	SNP	Silent	7	158552764	C	T	19	15
BRCA	TCGA-BH-A0E1	VPS13B	SNP	Missense_Mutation	8	100520093	T	C	50	77
BRCA	TCGA-BH-A0E1	TLR4	SNP	Missense_Mutation	9	120476816	C	T	27	46
BRCA	TCGA-BH-A0E2	CASZ1	SNP	Missense_Mutation	1	10711031	T	C	58	73
BRCA	TCGA-BH-A0E2	C1orf144	SNP	Missense_Mutation	1	16721598	G	A	44	97
BRCA	TCGA-BH-A0E2	SELP	SNP	Missense_Mutation	1	169588391	G	A	35	51
BRCA	TCGA-BH-A0E2	MLLT10	SNP	Nonsense_Mutation	10	21884363	T	A	49	49
BRCA	TCGA-BH-A0E2	TET1	SNP	Silent	10	70406122	A	G	1	64
BRCA	TCGA-BH-A0E2	C10orf27	SNP	Missense_Mutation	10	72539416	C	T	21	51
BRCA	TCGA-BH-A0E2	MMP8	SNP	Silent	11	102586044	G	A	35	50
BRCA	TCGA-BH-A0E2	POLE	SNP	Missense_Mutation	12	133248878	G	A	38	67
BRCA	TCGA-BH-A0E2	SCN8A	SNP	Missense_Mutation	12	52145348	T	G	52	90
BRCA	TCGA-BH-A0E2	ATN1	SNP	Silent	12	7047646	G	A	36	56
BRCA	TCGA-BH-A0E2	TPH2	SNP	Missense_Mutation	12	72388322	G	A	45	100
BRCA	TCGA-BH-A0E2	KCNC2	SNP	Silent	12	75444552	G	A	40	51
BRCA	TCGA-BH-A0E2	PCK2	SNP	Splice_site	14	24568928	A	C	3	44
BRCA	TCGA-BH-A0E2	FANCM	INS	Frame_Shift_Ins	14	45644374	-	T	36	46
BRCA	TCGA-BH-A0E2	CGRRF1	SNP	Missense_Mutation	14	54996904	G	T	33	66
BRCA	TCGA-BH-A0E2	MED24	SNP	Missense_Mutation	17	38182541	A	T	6	90
BRCA	TCGA-BH-A0E2	EMILIN2	SNP	Missense_Mutation	18	2909695	C	T	23	50
BRCA	TCGA-BH-A0E2	MYOM1	SNP	Silent	18	3090726	C	T	24	57
BRCA	TCGA-BH-A0E2	LONP1	SNP	Splice_Site	19	5708352	C	T	18	77
BRCA	TCGA-BH-A0E2	DCAF17	SNP	Missense_Mutation	2	172291597	G	A	36	73
BRCA	TCGA-BH-A0E2	SP140	SNP	Missense_Mutation	2	231176276	G	A	38	57
BRCA	TCGA-BH-A0E2	BPI	SNP	Splice_site	20	36962894	C	T	19	37
BRCA	TCGA-BH-A0E2	PPP1R3D	SNP	Missense_Mutation	20	58514508	G	C	39	56
BRCA	TCGA-BH-A0E2	GDI1	SNP	Missense_Mutation	23	153668416	C	T	23	66
BRCA	TCGA-BH-A0E2	GLT8D1	SNP	Missense_Mutation	3	52728920	C	A	32	100
BRCA	TCGA-BH-A0E2	MAML3	SNP	Missense_Mutation	4	140811265	G	A	39	74
BRCA	TCGA-BH-A0E2	LETM1	SNP	Missense_Mutation	4	1836578	G	T	41	53
BRCA	TCGA-BH-A0E2	OTP	SNP	Missense_Mutation	5	76932789	G	T	48	98
BRCA	TCGA-BH-A0E2	REV3L	SNP	Missense_Mutation	6	111695272	A	G	4	55
BRCA	TCGA-BH-A0E2	KPNA5	SNP	Missense_Mutation	6	117050794	T	C	58	93
BRCA	TCGA-BH-A0E2	PEX6	SNP	Silent	6	42942732	G	A	34	60
BRCA	TCGA-BH-A0E2	ABCF2	SNP	Silent	7	150919671	G	A	35	69
BRCA	TCGA-BH-A0E2	FAM188B	SNP	Silent	7	30818062	A	C	8	44
BRCA	TCGA-BH-A0E2	TSNARE1	SNP	Missense_Mutation	8	143425597	G	A	37	52
BRCA	TCGA-BH-A0E2	RB1CC1	SNP	Missense_Mutation	8	53558327	C	T	32	65
BRCA	TCGA-BH-A0E2	APTX	SNP	Missense_Mutation	9	32987555	G	C	46	49
BRCA	TCGA-BH-A0E6	MTOR	SNP	Missense_Mutation	1	11313969	T	C	52	88
BRCA	TCGA-BH-A0E6	NOTCH2	DEL	Frame_Shift_Del	1	120484229	G	-	40	46
BRCA	TCGA-BH-A0E6	RIIAD1	SNP	Missense_Mutation	1	151687003	G	T	44	59
BRCA	TCGA-BH-A0E6	UBR4	SNP	Missense_Mutation	1	19404496	C	G	19	94
BRCA	TCGA-BH-A0E6	OR2T12	SNP	Missense_Mutation	1	248458340	C	T	19	49
BRCA	TCGA-BH-A0E6	EIF2C1	SNP	Missense_Mutation	1	36372581	G	A	46	100
BRCA	TCGA-BH-A0E6	POLL	SNP	Missense_Mutation	10	103339232	T	C	62	74
BRCA	TCGA-BH-A0E6	SVIL	SNP	Missense_Mutation	10	29756715	G	A	42	100
BRCA	TCGA-BH-A0E6	LRIT2	SNP	Missense_Mutation	10	85984158	A	T	3	48
BRCA	TCGA-BH-A0E6	SORBS1	SNP	Missense_Mutation	10	97158839	G	A	38	53
BRCA	TCGA-BH-A0E6	KIAA1377	SNP	Missense_Mutation	11	101833078	G	A	33	55
BRCA	TCGA-BH-A0E6	DRD2	SNP	Silent	11	113286299	G	A	37	48
BRCA	TCGA-BH-A0E6	API5	SNP	Missense_Mutation	11	43364082	G	A	34	52
BRCA	TCGA-BH-A0E6	RELA	SNP	Splice_Site	11	65427261	T	C	53	49
BRCA	TCGA-BH-A0E6	NOX4	SNP	Missense_Mutation	11	89166019	C	T	21	77
BRCA	TCGA-BH-A0E6	P2RX7	SNP	Silent	12	121615126	C	T	31	59
BRCA	TCGA-BH-A0E6	SLC6A12	SNP	Missense_Mutation	12	306621	C	A	26	82
BRCA	TCGA-BH-A0E6	ADCY6	SNP	Missense_Mutation	12	49176644	C	G	19	52
BRCA	TCGA-BH-A0E6	LRIG3	SNP	Missense_Mutation	12	59271347	C	T	31	88
BRCA	TCGA-BH-A0E6	RASA3	SNP	Splice_site	13	114806570	C	G	22	92
BRCA	TCGA-BH-A0E6	NHLRC3	SNP	Missense_Mutation	13	39612843	C	G	27	63
BRCA	TCGA-BH-A0E6	AHNAK2	SNP	Silent	14	105409182	C	T	23	25
BRCA	TCGA-BH-A0E6	NEK9	SNP	Nonsense_Mutation	14	75580953	G	A	47	68
BRCA	TCGA-BH-A0E6	WDR76	SNP	Missense_Mutation	15	44149283	C	A	18	54
BRCA	TCGA-BH-A0E6	TMEM101	SNP	Missense_Mutation	17	42092199	C	T	24	95
BRCA	TCGA-BH-A0E6	ABCA9	SNP	Silent	17	66981200	C	T	28	59
BRCA	TCGA-BH-A0E6	TP53	INS	Frame_Shift_Ins	17	7577566	-	A	61	85
BRCA	TCGA-BH-A0E6	VAPA	SNP	Missense_Mutation	18	9931897	G	C	38	100
BRCA	TCGA-BH-A0E6	RPS5	SNP	Missense_Mutation	19	58904744	G	C	44	91
BRCA	TCGA-BH-A0E6	TIMM44	SNP	Silent	19	8006002	G	A	38	40
BRCA	TCGA-BH-A0E6	MYO1F	SNP	Silent	19	8592341	C	T	27	41
BRCA	TCGA-BH-A0E6	MYL1	SNP	Missense_Mutation	2	211159027	G	C	48	80
BRCA	TCGA-BH-A0E6	ASXL2	SNP	Nonsense_Mutation	2	25973203	G	A	48	76
BRCA	TCGA-BH-A0E6	TMCC1	SNP	Missense_Mutation	3	129546708	C	G	28	74
BRCA	TCGA-BH-A0E6	GBE1	SNP	Missense_Mutation	3	81695559	A	C	3	89
BRCA	TCGA-BH-A0E6	GALNT7	SNP	Nonsense_Mutation	4	174216642	C	T	19	58
BRCA	TCGA-BH-A0E6	LNX1	SNP	Silent	4	54364837	G	T	39	62
BRCA	TCGA-BH-A0E6	PRDM8	SNP	Missense_Mutation	4	81124519	C	T	23	72
BRCA	TCGA-BH-A0E6	ZFR	SNP	Missense_Mutation	5	32397416	C	T	23	88
BRCA	TCGA-BH-A0E6	TNPO1	SNP	Missense_Mutation	5	72187661	C	T	30	96
BRCA	TCGA-BH-A0E6	OPRM1	SNP	Missense_Mutation	6	154414532	G	A	40	46
BRCA	TCGA-BH-A0E6	TIAM2	SNP	Missense_Mutation	6	155450938	C	T	23	92
BRCA	TCGA-BH-A0E6	INTS1	SNP	Missense_Mutation	7	1527532	G	A	39	66
BRCA	TCGA-BH-A0E6	TSPAN13	SNP	Silent	7	16816717	C	T	27	56
BRCA	TCGA-BH-A0E6	LANCL2	SNP	Splice_site	7	55492947	G	T	44	54
BRCA	TCGA-BH-A0E6	FAM220A	SNP	Missense_Mutation	7	6370439	C	T	23	44
BRCA	TCGA-BH-A0E6	LRP12	DEL	Frame_Shift_Del	8	105503549	GTGA	-	48	77
BRCA	TCGA-BH-A0E6	SLCO5A1	SNP	Missense_Mutation	8	70585447	C	T	19	100
BRCA	TCGA-BH-A0E6	PRPF4	SNP	Silent	9	116038854	C	T	20	55
BRCA	TCGA-BH-A0E7	KIRREL	SNP	Missense_Mutation	1	158061187	C	A	24	63
BRCA	TCGA-BH-A0E7	MST1P9	SNP	Missense_Mutation	1	17084538	G	C	41	54
BRCA	TCGA-BH-A0E7	ARID1A	SNP	Splice_site	1	27099478	G	A	35	97
BRCA	TCGA-BH-A0E7	MTF1	SNP	Splice_site	1	38289483	G	A	44	61
BRCA	TCGA-BH-A0E7	ADAM12	SNP	Missense_Mutation	10	127708377	G	T	44	50
BRCA	TCGA-BH-A0E7	PALD1	SNP	Missense_Mutation	10	72298084	C	T	22	68
BRCA	TCGA-BH-A0E7	PRF1	SNP	Missense_Mutation	10	72358324	G	A	38	50
BRCA	TCGA-BH-A0E7	MYOZ1	SNP	Splice_Site	10	75394240	G	A	46	54
BRCA	TCGA-BH-A0E7	SLC22A11	SNP	Silent	11	64323714	G	T	42	51
BRCA	TCGA-BH-A0E7	DPF2	SNP	Silent	11	65116380	G	A	40	42
BRCA	TCGA-BH-A0E7	SCYL1	SNP	Nonsense_Mutation	11	65305349	C	T	29	52
BRCA	TCGA-BH-A0E7	PDE2A	SNP	Splice_site	11	72300219	G	A	39	48
BRCA	TCGA-BH-A0E7	TBX3	DEL	Frame_Shift_Del	12	115109800	T	-	60	65
BRCA	TCGA-BH-A0E7	XPOT	SNP	Missense_Mutation	12	64818467	T	C	55	91
BRCA	TCGA-BH-A0E7	TRPC4	SNP	Missense_Mutation	13	38237581	A	T	8	94
BRCA	TCGA-BH-A0E7	C14orf39	SNP	Nonsense_Mutation	14	60938273	G	A	37	49
BRCA	TCGA-BH-A0E7	LYSMD4	SNP	Missense_Mutation	15	100271565	T	C	49	54
BRCA	TCGA-BH-A0E7	CDC27	SNP	Missense_Mutation	17	45219239	C	T	29	98
BRCA	TCGA-BH-A0E7	ZNF98	SNP	Missense_Mutation	19	22586248	C	T	27	49
BRCA	TCGA-BH-A0E7	UQCRFS1	SNP	Silent	19	29698494	C	T	19	27
BRCA	TCGA-BH-A0E7	UXS1	SNP	Missense_Mutation	2	106761718	C	T	19	99
BRCA	TCGA-BH-A0E7	CYP20A1	SNP	Missense_Mutation	2	204137424	A	G	12	83
BRCA	TCGA-BH-A0E7	C2orf16	SNP	Silent	2	27804476	C	T	27	52
BRCA	TCGA-BH-A0E7	DYSF	SNP	Missense_Mutation	2	71744138	T	C	54	69
BRCA	TCGA-BH-A0E7	C2orf90	SNP	Silent	2	905334	A	G	1	51
BRCA	TCGA-BH-A0E7	HIRA	SNP	Nonsense_Mutation	22	19349345	G	A	38	60
BRCA	TCGA-BH-A0E7	RGL4	SNP	Missense_Mutation	22	24040406	G	A	37	52
BRCA	TCGA-BH-A0E7	ARHGEF6	SNP	Silent	23	135772826	T	C	51	47
BRCA	TCGA-BH-A0E7	F8	SNP	Silent	23	154194350	T	A	50	47
BRCA	TCGA-BH-A0E7	PHEX	SNP	Missense_Mutation	23	22245690	T	A	52	64
BRCA	TCGA-BH-A0E7	ZMYM3	DEL	Frame_Shift_Del	23	70467688	AGTA	-	7	85
BRCA	TCGA-BH-A0E7	EPHB1	SNP	Missense_Mutation	3	134880927	G	A	39	79
BRCA	TCGA-BH-A0E7	CISH	SNP	Silent	3	50645371	T	C	59	35
BRCA	TCGA-BH-A0E7	TLR2	SNP	Nonsense_Mutation	4	154624747	C	T	27	53
BRCA	TCGA-BH-A0E7	ZNF131	SNP	Silent	5	43174806	A	G	14	47
BRCA	TCGA-BH-A0E7	MAP3K1	DEL	Frame_Shift_Del	5	56155572	G	-	47	78
BRCA	TCGA-BH-A0E7	SLC35B2	SNP	Missense_Mutation	6	44223035	T	G	62	92
BRCA	TCGA-BH-A0E7	CD36	SNP	Splice_site	7	80285857	A	T	5	71
BRCA	TCGA-BH-A0E7	MTMR9	INS	Frame_Shift_Ins	8	11180161	-	TT	32	95
BRCA	TCGA-BH-A0E7	COL22A1	SNP	Missense_Mutation	8	139890151	C	T	27	54
BRCA	TCGA-BH-A0E7	TMOD1	SNP	Missense_Mutation	9	100308545	C	A	28	97
BRCA	TCGA-BH-A0E9	LMO4	SNP	Missense_Mutation	1	87805767	C	T	23	100
BRCA	TCGA-BH-A0E9	PTEN	DEL	Splice_Site	10	89685316	T	-	57	89
BRCA	TCGA-BH-A0E9	INTS4	INS	Frame_Shift_Ins	11	77702264	-	T	28	97
BRCA	TCGA-BH-A0E9	ACACB	SNP	Missense_Mutation	12	109617027	G	T	34	77
BRCA	TCGA-BH-A0E9	ESPL1	SNP	Silent	12	53663662	C	A	21	52
BRCA	TCGA-BH-A0E9	CDH1	INS	Frame_Shift_Ins	16	68862178	-	AT	45	98
BRCA	TCGA-BH-A0E9	CAMTA2	SNP	Missense_Mutation	17	4883016	G	C	44	53
BRCA	TCGA-BH-A0E9	SLC25A53	SNP	Missense_Mutation	23	103349492	C	T	27	64
BRCA	TCGA-BH-A0E9	KLHL6	SNP	Silent	3	183209733	G	A	39	20
BRCA	TCGA-BH-A0E9	RBM5	DEL	Frame_Shift_Del	3	50151449	T	-	56	78
BRCA	TCGA-BH-A0E9	PCDHB3	SNP	Silent	5	140482342	T	C	64	34
BRCA	TCGA-BH-A0E9	CNBD1	SNP	Silent	8	88365988	C	T	25	57
BRCA	TCGA-BH-A0EA	PTPRU	SNP	Missense_Mutation	1	29630376	G	A	38	55
BRCA	TCGA-BH-A0EA	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-BH-A0EA	GPR162	SNP	Missense_Mutation	12	6936041	G	A	38	59
BRCA	TCGA-BH-A0EA	CLEC4C	SNP	Missense_Mutation	12	7890152	G	T	44	43
BRCA	TCGA-BH-A0EA	CLEC4A	SNP	Missense_Mutation	12	8290866	A	T	12	49
BRCA	TCGA-BH-A0EA	TC2N	SNP	Missense_Mutation	14	92278710	A	G	12	61
BRCA	TCGA-BH-A0EA	RABEP2	SNP	Silent	16	28935782	C	T	21	63
BRCA	TCGA-BH-A0EA	CBFB	SNP	Missense_Mutation	16	67100613	A	G	4	89
BRCA	TCGA-BH-A0EA	SDK2	SNP	Missense_Mutation	17	71394498	G	A	41	94
BRCA	TCGA-BH-A0EA	RTTN	SNP	Nonsense_Mutation	18	67727270	C	A	30	80
BRCA	TCGA-BH-A0EA	TSHZ3	SNP	Missense_Mutation	19	31767562	C	T	25	100
BRCA	TCGA-BH-A0EA	PTPN4	SNP	Missense_Mutation	2	120725478	A	G	4	63
BRCA	TCGA-BH-A0EA	CD93	SNP	Silent	20	23066476	G	A	38	42
BRCA	TCGA-BH-A0EA	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0EA	TXNDC15	SNP	Nonsense_Mutation	5	134210139	C	T	19	59
BRCA	TCGA-BH-A0EA	PKD2L2	SNP	Missense_Mutation	5	137244512	G	A	40	100
BRCA	TCGA-BH-A0EA	PDZD2	SNP	Missense_Mutation	5	31799548	G	A	37	93
BRCA	TCGA-BH-A0EA	XPO5	SNP	Missense_Mutation	6	43538686	G	C	33	53
BRCA	TCGA-BH-A0EA	ZNF425	SNP	Missense_Mutation	7	148801590	C	T	27	42
BRCA	TCGA-BH-A0EA	EIF2AK1	SNP	Silent	7	6085747	T	A	61	51
BRCA	TCGA-BH-A0EA	COL14A1	SNP	Missense_Mutation	8	121238949	G	A	45	84
BRCA	TCGA-BH-A0EA	PRKDC	SNP	Missense_Mutation	8	48839867	C	T	26	74
BRCA	TCGA-BH-A0EB	CHRNB2	INS	Frame_Shift_Ins	1	154544053	-	CCATC	34	73
BRCA	TCGA-BH-A0EB	NTRK1	SNP	Missense_Mutation	1	156843599	G	A	39	61
BRCA	TCGA-BH-A0EB	SPEN	SNP	Silent	1	16254679	G	A	43	49
BRCA	TCGA-BH-A0EB	GCLM	SNP	Missense_Mutation	1	94354623	A	C	14	92
BRCA	TCGA-BH-A0EB	WDR96	SNP	Missense_Mutation	10	105922136	G	A	39	65
BRCA	TCGA-BH-A0EB	SORCS1	SNP	Missense_Mutation	10	108412155	C	G	21	66
BRCA	TCGA-BH-A0EB	DNAH10	SNP	Silent	12	124387592	C	T	29	60
BRCA	TCGA-BH-A0EB	SENP1	DEL	Frame_Shift_Del	12	48440181	AT	-	8	54
BRCA	TCGA-BH-A0EB	SRGAP1	SNP	Missense_Mutation	12	64472709	C	T	19	98
BRCA	TCGA-BH-A0EB	ABCC6	SNP	Missense_Mutation	16	16315544	C	A	22	56
BRCA	TCGA-BH-A0EB	ATP2A1	SNP	Silent	16	28909329	C	A	26	58
BRCA	TCGA-BH-A0EB	RAVER1	SNP	Missense_Mutation	19	10434107	C	T	27	89
BRCA	TCGA-BH-A0EB	DOCK6	SNP	Missense_Mutation	19	11311605	C	T	17	94
BRCA	TCGA-BH-A0EB	MYO9B	SNP	Splice_site	19	17313112	G	T	35	85
BRCA	TCGA-BH-A0EB	MEGF8	SNP	Missense_Mutation	19	42840407	C	T	19	53
BRCA	TCGA-BH-A0EB	ZNF765	SNP	Missense_Mutation	19	53911368	A	G	8	53
BRCA	TCGA-BH-A0EB	IL1RL2	SNP	Missense_Mutation	2	102804317	C	G	22	62
BRCA	TCGA-BH-A0EB	PDE11A	SNP	Missense_Mutation	2	178565928	G	A	42	98
BRCA	TCGA-BH-A0EB	USP39	SNP	Silent	2	85857864	T	G	54	61
BRCA	TCGA-BH-A0EB	PRND	SNP	Missense_Mutation	20	4705538	C	T	27	51
BRCA	TCGA-BH-A0EB	UPF3B	SNP	Missense_Mutation	23	118968924	C	T	29	81
BRCA	TCGA-BH-A0EB	MOSPD2	SNP	Silent	23	14910870	T	A	59	61
BRCA	TCGA-BH-A0EB	PHKA2	SNP	Silent	23	18943843	G	T	41	47
BRCA	TCGA-BH-A0EB	XK	SNP	Missense_Mutation	23	37553705	C	T	23	56
BRCA	TCGA-BH-A0EB	FAM123B	SNP	Missense_Mutation	23	63412178	T	G	58	84
BRCA	TCGA-BH-A0EB	GHRL	SNP	Missense_Mutation	3	10331484	C	T	24	46
BRCA	TCGA-BH-A0EB	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0EB	CNTN4	SNP	Splice_site	3	3085276	C	T	25	100
BRCA	TCGA-BH-A0EB	PRDM8	SNP	Missense_Mutation	4	81124648	C	G	27	66
BRCA	TCGA-BH-A0EB	FSTL4	SNP	Missense_Mutation	5	132535364	T	G	59	73
BRCA	TCGA-BH-A0EB	MLLT4	SNP	Nonsense_Mutation	6	168312082	C	G	17	69
BRCA	TCGA-BH-A0EB	C6orf141	SNP	Missense_Mutation	6	49519103	G	C	33	60
BRCA	TCGA-BH-A0EB	IMPG1	SNP	Missense_Mutation	6	76751758	C	T	17	50
BRCA	TCGA-BH-A0EB	ZSCAN21	SNP	Missense_Mutation	7	99654841	G	A	48	79
BRCA	TCGA-BH-A0EB	C8orf4	SNP	Silent	8	40011156	C	T	23	12
BRCA	TCGA-BH-A0EB	ANK1	SNP	Missense_Mutation	8	41591581	A	T	2	49
BRCA	TCGA-BH-A0EB	ZFHX4	SNP	Missense_Mutation	8	77768353	C	T	31	100
BRCA	TCGA-BH-A0EB	PAPPA	SNP	Missense_Mutation	9	118950059	C	T	23	100
BRCA	TCGA-BH-A0EB	NUP214	SNP	Missense_Mutation	9	134003062	A	G	4	74
BRCA	TCGA-BH-A0EB	TOPORS	SNP	Silent	9	32541997	G	T	35	58
BRCA	TCGA-BH-A0EE	RBM15	SNP	Missense_Mutation	1	110884723	A	G	7	91
BRCA	TCGA-BH-A0EE	MTOR	SNP	Missense_Mutation	1	11204742	C	G	31	98
BRCA	TCGA-BH-A0EE	PTGFRN	SNP	Missense_Mutation	1	117527304	G	C	45	58
BRCA	TCGA-BH-A0EE	GPA33	SNP	Silent	1	167024317	G	A	37	43
BRCA	TCGA-BH-A0EE	ARID1A	SNP	Missense_Mutation	1	27089586	C	T	22	83
BRCA	TCGA-BH-A0EE	NPHP4	SNP	Missense_Mutation	1	5969237	G	A	39	48
BRCA	TCGA-BH-A0EE	SNX7	SNP	Missense_Mutation	1	99164273	G	A	45	97
BRCA	TCGA-BH-A0EE	SMC3	SNP	Missense_Mutation	10	112340713	G	A	33	98
BRCA	TCGA-BH-A0EE	KIF5B	SNP	Missense_Mutation	10	32326302	C	T	29	100
BRCA	TCGA-BH-A0EE	PARG	SNP	Silent	10	51087829	C	T	27	47
BRCA	TCGA-BH-A0EE	GLUD1	SNP	Silent	10	88820732	A	G	7	52
BRCA	TCGA-BH-A0EE	TLL2	SNP	Missense_Mutation	10	98165021	C	T	23	98
BRCA	TCGA-BH-A0EE	ARCN1	DEL	Frame_Shift_Del	11	118471344	C	-	18	99
BRCA	TCGA-BH-A0EE	ARHGEF12	SNP	Silent	11	120347958	A	T	8	39
BRCA	TCGA-BH-A0EE	FOXRED1	SNP	Silent	11	126147521	G	T	45	59
BRCA	TCGA-BH-A0EE	KLC2	SNP	Splice_Site	11	66032708	T	G	59	86
BRCA	TCGA-BH-A0EE	LRTOMT	SNP	Missense_Mutation	11	71804648	T	A	50	51
BRCA	TCGA-BH-A0EE	LOC341378	SNP	Missense_Mutation	12	106565213	G	C	45	66
BRCA	TCGA-BH-A0EE	SBNO1	SNP	Silent	12	123789180	C	A	30	62
BRCA	TCGA-BH-A0EE	GRIN2B	SNP	Missense_Mutation	12	13722841	C	A	26	100
BRCA	TCGA-BH-A0EE	IPO8	SNP	Missense_Mutation	12	30814170	C	G	29	83
BRCA	TCGA-BH-A0EE	IPO8	SNP	Missense_Mutation	12	30815380	C	T	30	97
BRCA	TCGA-BH-A0EE	IPO8	SNP	Missense_Mutation	12	30819121	C	G	32	57
BRCA	TCGA-BH-A0EE	SLC38A4	SNP	Silent	12	47173627	G	T	46	55
BRCA	TCGA-BH-A0EE	CCT2	SNP	Missense_Mutation	12	69981336	G	C	45	97
BRCA	TCGA-BH-A0EE	GALNT4	DEL	Frame_Shift_Del	12	89917958	CTCATACATTCTTTTATCCTCTATGTGT	-	20	71
BRCA	TCGA-BH-A0EE	MARK3	SNP	Missense_Mutation	14	103969315	T	G	50	32
BRCA	TCGA-BH-A0EE	IRF9	SNP	Missense_Mutation	14	24631474	C	A	30	96
BRCA	TCGA-BH-A0EE	EML5	SNP	Missense_Mutation	14	89178714	C	T	31	95
BRCA	TCGA-BH-A0EE	CATSPERB	SNP	Missense_Mutation	14	92105498	C	T	27	46
BRCA	TCGA-BH-A0EE	GRAMD2	SNP	Missense_Mutation	15	72455727	G	A	39	63
BRCA	TCGA-BH-A0EE	CNOT1	SNP	Missense_Mutation	16	58577381	A	C	10	42
BRCA	TCGA-BH-A0EE	GAS8	SNP	Missense_Mutation	16	90097863	G	A	41	100
BRCA	TCGA-BH-A0EE	COX10	SNP	Splice_site	17	14110529	G	T	45	57
BRCA	TCGA-BH-A0EE	RGS9	SNP	Missense_Mutation	17	63221447	G	A	42	69
BRCA	TCGA-BH-A0EE	FN3KRP	SNP	Missense_Mutation	17	80676816	T	C	61	92
BRCA	TCGA-BH-A0EE	NOL4	SNP	Missense_Mutation	18	31599298	C	G	32	74
BRCA	TCGA-BH-A0EE	PHLPP1	SNP	Missense_Mutation	18	60642691	G	A	45	100
BRCA	TCGA-BH-A0EE	RASAL3	SNP	Missense_Mutation	19	15565183	C	T	29	77
BRCA	TCGA-BH-A0EE	DOT1L	SNP	Missense_Mutation	19	2202727	G	A	47	91
BRCA	TCGA-BH-A0EE	MAP3K10	SNP	Missense_Mutation	19	40711051	G	A	39	60
BRCA	TCGA-BH-A0EE	NLRP2	SNP	Splice_Site	19	55501561	G	A	40	64
BRCA	TCGA-BH-A0EE	TTC21B	SNP	Missense_Mutation	2	166771856	G	T	33	72
BRCA	TCGA-BH-A0EE	ERBB4	SNP	Missense_Mutation	2	212652791	G	C	35	81
BRCA	TCGA-BH-A0EE	CUL3	SNP	Missense_Mutation	2	225368461	C	T	29	100
BRCA	TCGA-BH-A0EE	LHCGR	SNP	Missense_Mutation	2	48982717	C	T	29	71
BRCA	TCGA-BH-A0EE	CDC25B	SNP	Missense_Mutation	20	3782704	G	A	39	52
BRCA	TCGA-BH-A0EE	DSCR6	SNP	Missense_Mutation	21	38390475	T	G	54	47
BRCA	TCGA-BH-A0EE	UPB1	SNP	Missense_Mutation	22	24898389	G	A	40	44
BRCA	TCGA-BH-A0EE	ZCCHC12	SNP	Missense_Mutation	23	117959442	G	A	45	65
BRCA	TCGA-BH-A0EE	CUL4B	SNP	Nonsense_Mutation	23	119679331	G	T	40	46
BRCA	TCGA-BH-A0EE	CNKSR2	SNP	Nonsense_Mutation	23	21458841	C	G	29	92
BRCA	TCGA-BH-A0EE	PCYT1B	SNP	Missense_Mutation	23	24580504	G	A	45	71
BRCA	TCGA-BH-A0EE	HEPH	SNP	Missense_Mutation	23	65408292	G	T	42	93
BRCA	TCGA-BH-A0EE	EDA	SNP	Missense_Mutation	23	68836169	T	G	59	49
BRCA	TCGA-BH-A0EE	CXorf26	SNP	Missense_Mutation	23	75397565	G	A	41	44
BRCA	TCGA-BH-A0EE	RPS6KA6	SNP	Missense_Mutation	23	83361977	T	C	49	48
BRCA	TCGA-BH-A0EE	ATG7	SNP	Missense_Mutation	3	11596291	G	A	41	93
BRCA	TCGA-BH-A0EE	ADCY5	SNP	Missense_Mutation	3	123166519	C	T	27	60
BRCA	TCGA-BH-A0EE	ASTE1	SNP	Missense_Mutation	3	130743358	G	T	45	65
BRCA	TCGA-BH-A0EE	HPS3	SNP	Missense_Mutation	3	148871407	G	A	33	94
BRCA	TCGA-BH-A0EE	PIK3CA	SNP	Splice_site	3	178942489	C	T	28	84
BRCA	TCGA-BH-A0EE	TWF2	SNP	Missense_Mutation	3	52265976	G	A	37	100
BRCA	TCGA-BH-A0EE	CACNA2D3	SNP	Missense_Mutation	3	54603876	G	A	37	100
BRCA	TCGA-BH-A0EE	ELF2	SNP	Missense_Mutation	4	139980483	G	C	36	76
BRCA	TCGA-BH-A0EE	MRFAP1	SNP	Missense_Mutation	4	6642662	G	A	37	51
BRCA	TCGA-BH-A0EE	KIAA0232	SNP	Missense_Mutation	4	6865866	C	G	30	69
BRCA	TCGA-BH-A0EE	SEMA6A	SNP	Silent	5	115782654	A	G	16	56
BRCA	TCGA-BH-A0EE	PPP2R2B	SNP	Silent	5	145969747	G	A	37	50
BRCA	TCGA-BH-A0EE	ERGIC1	INS	Frame_Shift_Ins	5	172359501	-	CT	5	68
BRCA	TCGA-BH-A0EE	ERGIC1	SNP	Missense_Mutation	5	172359502	A	T	3	73
BRCA	TCGA-BH-A0EE	PIK3R1	DEL	In_Frame_Del	5	67591104	TTAAACCAGACC	-	52	90
BRCA	TCGA-BH-A0EE	VCAN	SNP	Missense_Mutation	5	82837218	T	C	51	52
BRCA	TCGA-BH-A0EE	EPHA7	SNP	Missense_Mutation	6	93969111	C	G	32	100
BRCA	TCGA-BH-A0EE	DOCK4	SNP	Missense_Mutation	7	111387340	C	T	19	76
BRCA	TCGA-BH-A0EE	KCND2	SNP	Silent	7	119915571	C	T	30	65
BRCA	TCGA-BH-A0EE	GRID2IP	SNP	Silent	7	6541514	C	T	29	56
BRCA	TCGA-BH-A0EE	SEMA3C	SNP	Missense_Mutation	7	80434993	G	A	38	99
BRCA	TCGA-BH-A0EE	ZNF3	SNP	Missense_Mutation	7	99662422	C	T	29	50
BRCA	TCGA-BH-A0EE	WDR67	SNP	Missense_Mutation	8	124141389	G	A	40	64
BRCA	TCGA-BH-A0EE	OR13F1	SNP	Missense_Mutation	9	107267045	C	T	32	51
BRCA	TCGA-BH-A0EI	ZNF496	SNP	Missense_Mutation	1	247473058	G	A	40	55
BRCA	TCGA-BH-A0EI	SF3B2	SNP	Silent	11	65819873	C	T	23	34
BRCA	TCGA-BH-A0EI	ZNF143	SNP	Silent	11	9494303	A	G	2	45
BRCA	TCGA-BH-A0EI	SCFD1	SNP	Missense_Mutation	14	31118737	C	T	28	95
BRCA	TCGA-BH-A0EI	SNAPC1	SNP	Missense_Mutation	14	62229257	G	A	37	98
BRCA	TCGA-BH-A0EI	SERPINA9	SNP	Silent	14	94933670	T	A	51	41
BRCA	TCGA-BH-A0EI	SLC9A3R2	SNP	Missense_Mutation	16	2086421	C	T	23	78
BRCA	TCGA-BH-A0EI	MAP2K4	SNP	Missense_Mutation	17	12011150	A	G	12	90
BRCA	TCGA-BH-A0EI	FLII	SNP	Missense_Mutation	17	18157896	G	A	39	87
BRCA	TCGA-BH-A0EI	SIGLEC15	SNP	Missense_Mutation	18	43422104	G	T	45	57
BRCA	TCGA-BH-A0EI	ATRN	SNP	Missense_Mutation	20	3559378	G	C	48	100
BRCA	TCGA-BH-A0EI	PLCG1	SNP	Missense_Mutation	20	39802876	G	A	38	83
BRCA	TCGA-BH-A0EI	MAGEE2	SNP	Missense_Mutation	23	75004148	G	A	35	55
BRCA	TCGA-BH-A0EI	KLHL4	SNP	Missense_Mutation	23	86887332	G	A	35	96
BRCA	TCGA-BH-A0EI	GPR149	SNP	Missense_Mutation	3	154055726	C	T	19	100
BRCA	TCGA-BH-A0EI	DSPP	INS	Frame_Shift_Ins	4	88533705	-	GGAAAGAA	47	70
BRCA	TCGA-BH-A0EI	LINGO2	SNP	Missense_Mutation	9	27950338	C	T	27	89
BRCA	TCGA-BH-A0GY	AGL	DEL	Frame_Shift_Del	1	100376361	A	-	9	92
BRCA	TCGA-BH-A0GY	AGMAT	SNP	Missense_Mutation	1	15905362	G	A	39	48
BRCA	TCGA-BH-A0GY	EIF2C1	SNP	Silent	1	36358236	G	A	33	88
BRCA	TCGA-BH-A0GY	IL23R	SNP	Missense_Mutation	1	67648572	A	C	5	50
BRCA	TCGA-BH-A0GY	LRRC8D	SNP	Missense_Mutation	1	90400639	G	A	38	89
BRCA	TCGA-BH-A0GY	HPS6	SNP	Missense_Mutation	10	103826282	G	T	33	73
BRCA	TCGA-BH-A0GY	KCNA1	SNP	Missense_Mutation	12	5021358	G	A	37	98
BRCA	TCGA-BH-A0GY	ALG11	SNP	Silent	13	52586563	C	T	23	39
BRCA	TCGA-BH-A0GY	ZNF646	SNP	Missense_Mutation	16	31090899	C	T	30	61
BRCA	TCGA-BH-A0GY	GPT2	SNP	Missense_Mutation	16	46960909	G	A	39	99
BRCA	TCGA-BH-A0GY	ABAT	SNP	Missense_Mutation	16	8829606	A	G	8	49
BRCA	TCGA-BH-A0GY	MAP2K4	SNP	Missense_Mutation	17	12028665	G	T	48	98
BRCA	TCGA-BH-A0GY	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-BH-A0GY	DNMT1	SNP	Missense_Mutation	19	10249146	C	G	30	99
BRCA	TCGA-BH-A0GY	CARM1	DEL	Frame_Shift_Del	19	11024609	G	-	47	61
BRCA	TCGA-BH-A0GY	LPHN1	DEL	Frame_Shift_Del	19	14262349	A	-	5	82
BRCA	TCGA-BH-A0GY	DPY19L3	SNP	Missense_Mutation	19	32949349	A	G	16	85
BRCA	TCGA-BH-A0GY	ARHGAP35	SNP	Nonsense_Mutation	19	47424158	C	G	19	47
BRCA	TCGA-BH-A0GY	SLC27A5	INS	Frame_Shift_Ins	19	59022779	-	C	9	50
BRCA	TCGA-BH-A0GY	NEB	DEL	Frame_Shift_Del	2	152362016	CT	-	24	65
BRCA	TCGA-BH-A0GY	TTN	SNP	Missense_Mutation	2	179639817	C	G	18	100
BRCA	TCGA-BH-A0GY	FBXO41	DEL	Frame_Shift_Del	2	73491166	C	-	26	76
BRCA	TCGA-BH-A0GY	TRPC4AP	DEL	In_Frame_Del	20	33598008	GCT	-	34	98
BRCA	TCGA-BH-A0GY	MAGEC2	SNP	Missense_Mutation	23	141291740	C	T	19	35
BRCA	TCGA-BH-A0GY	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0GY	MAML3	SNP	Missense_Mutation	4	140811230	G	A	42	70
BRCA	TCGA-BH-A0GY	USP38	SNP	Missense_Mutation	4	144116875	T	G	63	92
BRCA	TCGA-BH-A0GY	RELL1	SNP	Silent	4	37640083	C	A	17	53
BRCA	TCGA-BH-A0GY	PCDHGA2	SNP	Silent	5	140720425	G	A	38	48
BRCA	TCGA-BH-A0GY	SLC1A3	SNP	Missense_Mutation	5	36679791	G	T	44	72
BRCA	TCGA-BH-A0GY	VWA7	SNP	Missense_Mutation	6	31740805	C	T	27	59
BRCA	TCGA-BH-A0GY	ARMC12	SNP	Silent	6	35716413	C	T	19	34
BRCA	TCGA-BH-A0GY	POU3F2	SNP	Missense_Mutation	6	99284014	C	G	26	80
BRCA	TCGA-BH-A0GY	ABCA13	SNP	Missense_Mutation	7	48284232	T	C	55	55
BRCA	TCGA-BH-A0GZ	NPR1	SNP	Missense_Mutation	1	153662393	C	T	27	61
BRCA	TCGA-BH-A0GZ	USF1	SNP	Missense_Mutation	1	161011928	G	C	35	91
BRCA	TCGA-BH-A0GZ	GORAB	SNP	Missense_Mutation	1	170508668	C	A	30	66
BRCA	TCGA-BH-A0GZ	CACNA1S	SNP	Missense_Mutation	1	201030559	C	T	19	49
BRCA	TCGA-BH-A0GZ	DNMBP	SNP	Missense_Mutation	10	101728874	C	T	31	99
BRCA	TCGA-BH-A0GZ	PTEN	DEL	Frame_Shift_Del	10	89692748	TGAGGTTATCTTTTTACCACAGTTGCACAATATCCTTT	-	55	64
BRCA	TCGA-BH-A0GZ	NADSYN1	SNP	Missense_Mutation	11	71164404	G	A	42	90
BRCA	TCGA-BH-A0GZ	C3AR1	SNP	Missense_Mutation	12	8212541	G	A	45	60
BRCA	TCGA-BH-A0GZ	COL4A1	SNP	Silent	13	110845223	G	A	40	51
BRCA	TCGA-BH-A0GZ	ZFYVE26	SNP	Splice_Site	14	68241732	C	G	18	85
BRCA	TCGA-BH-A0GZ	GALNTL1	SNP	Missense_Mutation	14	69791471	A	G	4	91
BRCA	TCGA-BH-A0GZ	YLPM1	SNP	Nonsense_Mutation	14	75247171	C	T	25	79
BRCA	TCGA-BH-A0GZ	CYFIP1	SNP	Missense_Mutation	15	22990097	G	T	39	85
BRCA	TCGA-BH-A0GZ	FBN1	SNP	Missense_Mutation	15	48757774	C	T	20	71
BRCA	TCGA-BH-A0GZ	PDE8A	SNP	Missense_Mutation	15	85659299	A	T	11	60
BRCA	TCGA-BH-A0GZ	ZNF688	SNP	Missense_Mutation	16	30581301	C	G	31	60
BRCA	TCGA-BH-A0GZ	ZNF276	SNP	Silent	16	89789201	G	A	43	49
BRCA	TCGA-BH-A0GZ	PRPF8	SNP	Missense_Mutation	17	1564332	G	A	48	100
BRCA	TCGA-BH-A0GZ	TADA2A	SNP	Silent	17	35837018	G	A	33	80
BRCA	TCGA-BH-A0GZ	KRTAP1-1	SNP	Missense_Mutation	17	39197306	C	A	19	73
BRCA	TCGA-BH-A0GZ	GPR42	SNP	Silent	19	35862846	C	A	30	46
BRCA	TCGA-BH-A0GZ	SBSN	SNP	Silent	19	36017756	C	T	23	48
BRCA	TCGA-BH-A0GZ	TMEM87B	SNP	Missense_Mutation	2	112854701	T	A	61	47
BRCA	TCGA-BH-A0GZ	NEB	SNP	Missense_Mutation	2	152432783	G	T	42	100
BRCA	TCGA-BH-A0GZ	PPIG	SNP	Silent	2	170493412	A	G	4	55
BRCA	TCGA-BH-A0GZ	SLC40A1	SNP	Silent	2	190430090	A	G	4	63
BRCA	TCGA-BH-A0GZ	SP100	SNP	Missense_Mutation	2	231307660	C	T	19	36
BRCA	TCGA-BH-A0GZ	TRMT61B	DEL	Frame_Shift_Del	2	29092602	T	-	52	57
BRCA	TCGA-BH-A0GZ	FOXN2	SNP	Missense_Mutation	2	48600495	A	C	15	54
BRCA	TCGA-BH-A0GZ	CEP68	SNP	Missense_Mutation	2	65299971	G	T	39	52
BRCA	TCGA-BH-A0GZ	CPXM1	SNP	Missense_Mutation	20	2776476	G	A	35	61
BRCA	TCGA-BH-A0GZ	ARMCX2	SNP	Missense_Mutation	23	100912411	G	C	34	64
BRCA	TCGA-BH-A0GZ	SELT	SNP	Missense_Mutation	3	150340928	G	T	34	82
BRCA	TCGA-BH-A0GZ	SETD2	SNP	Missense_Mutation	3	47142959	G	C	41	52
BRCA	TCGA-BH-A0GZ	FAM193A	SNP	Missense_Mutation	4	2695544	C	T	24	67
BRCA	TCGA-BH-A0GZ	TAS2R16	SNP	Missense_Mutation	7	122634847	G	A	35	62
BRCA	TCGA-BH-A0GZ	RB1CC1	SNP	Missense_Mutation	8	53543057	C	T	24	83
BRCA	TCGA-BH-A0H0	FAM131C	SNP	Missense_Mutation	1	16386385	G	A	38	66
BRCA	TCGA-BH-A0H0	MST1P9	SNP	Silent	1	17083778	C	T	27	54
BRCA	TCGA-BH-A0H0	CALML6	SNP	Silent	1	1848228	A	G	13	50
BRCA	TCGA-BH-A0H0	OR6C1	SNP	Silent	12	55714623	G	A	47	57
BRCA	TCGA-BH-A0H0	RNASE3	SNP	Silent	14	21359857	A	G	2	44
BRCA	TCGA-BH-A0H0	C16orf45	SNP	Missense_Mutation	16	15609228	C	A	25	61
BRCA	TCGA-BH-A0H0	PCMTD2	SNP	Missense_Mutation	20	62896720	G	A	45	86
BRCA	TCGA-BH-A0H0	NIPSNAP1	SNP	Nonsense_Mutation	22	29956799	G	T	44	77
BRCA	TCGA-BH-A0H0	XPNPEP2	SNP	Missense_Mutation	23	128887190	A	G	2	64
BRCA	TCGA-BH-A0H0	DCAF8L2	SNP	Missense_Mutation	23	27765025	G	A	33	54
BRCA	TCGA-BH-A0H0	PPM1L	SNP	Missense_Mutation	3	160783305	A	C	12	87
BRCA	TCGA-BH-A0H0	CADPS	SNP	Silent	3	62423869	C	G	21	53
BRCA	TCGA-BH-A0H0	PROK2	SNP	Splice_Site	3	71821981	T	C	53	85
BRCA	TCGA-BH-A0H0	ARPC4-TTLL3	SNP	Missense_Mutation	3	9859333	G	T	44	93
BRCA	TCGA-BH-A0H0	TMEM155	SNP	Missense_Mutation	4	122681612	C	T	27	40
BRCA	TCGA-BH-A0H0	SORCS2	SNP	Silent	4	7714487	C	T	23	28
BRCA	TCGA-BH-A0H0	PCDHA13	SNP	Silent	5	140263650	C	T	23	44
BRCA	TCGA-BH-A0H0	ZNF354B	SNP	Missense_Mutation	5	178310408	A	C	4	69
BRCA	TCGA-BH-A0H0	RICTOR	SNP	Silent	5	38958580	G	A	43	45
BRCA	TCGA-BH-A0H0	AHRR	SNP	Missense_Mutation	5	434581	C	G	26	57
BRCA	TCGA-BH-A0H0	EZR	DEL	Frame_Shift_Del	6	159192434	A	-	5	48
BRCA	TCGA-BH-A0H0	OR6V1	SNP	Missense_Mutation	7	142749782	C	A	17	54
BRCA	TCGA-BH-A0H0	BMPER	SNP	Missense_Mutation	7	34192803	G	T	46	99
BRCA	TCGA-BH-A0H0	AOAH	SNP	Silent	7	36552857	C	T	28	55
BRCA	TCGA-BH-A0H0	TMEM71	SNP	Missense_Mutation	8	133764098	C	T	31	69
BRCA	TCGA-BH-A0H0	OR1N1	SNP	Silent	9	125289198	G	A	42	52
BRCA	TCGA-BH-A0H0	S1PR3	SNP	Missense_Mutation	9	91617190	G	C	34	58
BRCA	TCGA-BH-A0H3	ATP1B1	INS	Splice_site	1	169094123	-	T	12	54
BRCA	TCGA-BH-A0H3	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-BH-A0H3	MUC6	DEL	Frame_Shift_Del	11	1015877	AGGG	-	7	25
BRCA	TCGA-BH-A0H3	NUP160	SNP	Missense_Mutation	11	47804690	C	T	17	97
BRCA	TCGA-BH-A0H3	PPP1R13B	SNP	Missense_Mutation	14	104206651	G	A	38	100
BRCA	TCGA-BH-A0H3	DNAAF1	SNP	Silent	16	84203706	G	A	40	50
BRCA	TCGA-BH-A0H3	NCOR1	SNP	Nonsense_Mutation	17	16012217	T	A	64	69
BRCA	TCGA-BH-A0H3	PDE11A	SNP	Missense_Mutation	2	178936669	G	A	43	93
BRCA	TCGA-BH-A0H3	NGEF	SNP	Missense_Mutation	2	233759485	C	T	19	86
BRCA	TCGA-BH-A0H3	DDX17	SNP	Missense_Mutation	22	38890089	G	T	48	98
BRCA	TCGA-BH-A0H3	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-BH-A0H3	PABPC4L	SNP	Silent	4	135121899	C	T	29	43
BRCA	TCGA-BH-A0H3	BRPF3	SNP	Missense_Mutation	6	36181879	A	G	4	53
BRCA	TCGA-BH-A0H3	FZD3	SNP	Missense_Mutation	8	28385071	A	G	4	90
BRCA	TCGA-BH-A0H3	TEX15	SNP	Silent	8	30705430	C	T	30	59
BRCA	TCGA-BH-A0H5	CEP104	SNP	Silent	1	3732014	C	T	31	44
BRCA	TCGA-BH-A0H5	PTEN	SNP	Missense_Mutation	10	89692905	G	C	37	96
BRCA	TCGA-BH-A0H5	STARD9	SNP	Missense_Mutation	15	42984625	G	A	45	63
BRCA	TCGA-BH-A0H5	TBX4	SNP	Missense_Mutation	17	59557513	C	T	29	84
BRCA	TCGA-BH-A0H5	PITPNC1	SNP	Missense_Mutation	17	65665709	C	T	30	100
BRCA	TCGA-BH-A0H5	SHARPIN	SNP	Silent	8	145154289	G	A	45	54
BRCA	TCGA-BH-A0H6	FAM212B	SNP	Silent	1	112270004	G	A	40	53
BRCA	TCGA-BH-A0H6	GBP6	SNP	Missense_Mutation	1	89843685	G	T	41	72
BRCA	TCGA-BH-A0H6	LMBR1L	SNP	Splice_site	12	49496159	T	A	50	60
BRCA	TCGA-BH-A0H6	SACS	SNP	Splice_Site	13	23930148	T	G	55	93
BRCA	TCGA-BH-A0H6	NAA60	SNP	Missense_Mutation	16	3534810	G	A	39	35
BRCA	TCGA-BH-A0H6	SEZ6	SNP	Missense_Mutation	17	27308950	C	T	19	48
BRCA	TCGA-BH-A0H6	SMCHD1	SNP	Missense_Mutation	18	2700752	C	T	30	95
BRCA	TCGA-BH-A0H6	ZNF45	SNP	Silent	19	44419341	G	A	33	59
BRCA	TCGA-BH-A0H6	CNTNAP5	SNP	Silent	2	125504906	C	T	19	37
BRCA	TCGA-BH-A0H6	GULP1	SNP	Missense_Mutation	2	189405977	T	C	52	78
BRCA	TCGA-BH-A0H6	INO80B	SNP	Silent	2	74684835	G	C	38	37
BRCA	TCGA-BH-A0H6	C20orf132	SNP	Missense_Mutation	20	35772133	A	G	9	56
BRCA	TCGA-BH-A0H6	CHGB	SNP	Nonsense_Mutation	20	5903619	C	T	19	63
BRCA	TCGA-BH-A0H6	ABCG1	SNP	Splice_site	21	43693544	T	A	51	87
BRCA	TCGA-BH-A0H6	EWSR1	DEL	Frame_Shift_Del	22	29668221	C	-	26	69
BRCA	TCGA-BH-A0H6	SCUBE1	SNP	Missense_Mutation	22	43603586	C	T	27	93
BRCA	TCGA-BH-A0H6	ATXN10	SNP	Silent	22	46088888	G	A	37	23
BRCA	TCGA-BH-A0H6	DCAF8L2	SNP	Silent	23	27765399	A	G	3	53
BRCA	TCGA-BH-A0H6	TSPYL2	SNP	Missense_Mutation	23	53112279	T	G	59	50
BRCA	TCGA-BH-A0H6	GAP43	SNP	Missense_Mutation	3	115395170	G	T	43	51
BRCA	TCGA-BH-A0H6	CACNA1D	SNP	Missense_Mutation	3	53844194	C	T	23	76
BRCA	TCGA-BH-A0H6	UGT2A1	SNP	Missense_Mutation	4	70504971	T	A	52	50
BRCA	TCGA-BH-A0H6	COMMD10	SNP	Missense_Mutation	5	115428339	C	T	32	72
BRCA	TCGA-BH-A0H6	MAP3K1	DEL	Frame_Shift_Del	5	56184070	GTATGGAAGGAGCTGTGAT	-	36	66
BRCA	TCGA-BH-A0H6	DNAH8	SNP	Silent	6	38851106	G	A	46	63
BRCA	TCGA-BH-A0H6	RUNX1T1	SNP	Silent	8	92972572	C	T	27	46
BRCA	TCGA-BH-A0H7	DYRK3	SNP	Missense_Mutation	1	206820860	G	T	36	42
BRCA	TCGA-BH-A0H7	HOOK1	SNP	Missense_Mutation	1	60328544	G	A	37	96
BRCA	TCGA-BH-A0H7	FRMPD2	SNP	Missense_Mutation	10	49381051	G	A	40	43
BRCA	TCGA-BH-A0H7	ANK3	SNP	Silent	10	61842433	T	C	63	40
BRCA	TCGA-BH-A0H7	MUC5B	SNP	Missense_Mutation	11	1268585	C	T	30	49
BRCA	TCGA-BH-A0H7	KCNA4	SNP	Missense_Mutation	11	30033717	C	T	27	83
BRCA	TCGA-BH-A0H7	OR4A15	SNP	Missense_Mutation	11	55135676	C	A	28	56
BRCA	TCGA-BH-A0H7	FAM160A2	SNP	Missense_Mutation	11	6239359	T	C	58	88
BRCA	TCGA-BH-A0H7	MRPS31	SNP	Missense_Mutation	13	41333178	C	G	29	64
BRCA	TCGA-BH-A0H7	LOC220429	SNP	Missense_Mutation	13	50467044	G	C	38	25
BRCA	TCGA-BH-A0H7	METTL9	SNP	Missense_Mutation	16	21636383	G	C	33	68
BRCA	TCGA-BH-A0H7	CCL4L2	SNP	Nonsense_Mutation	17	34641454	C	T	21	56
BRCA	TCGA-BH-A0H7	ZNF536	SNP	Silent	19	31038893	G	A	38	53
BRCA	TCGA-BH-A0H7	CD22	SNP	Splice_Site	19	35827245	G	A	40	72
BRCA	TCGA-BH-A0H7	PXDN	SNP	Missense_Mutation	2	1652010	G	A	38	100
BRCA	TCGA-BH-A0H7	SPAG16	SNP	Silent	2	214215282	G	A	37	53
BRCA	TCGA-BH-A0H7	ZNF513	SNP	Missense_Mutation	2	27600657	G	A	40	73
BRCA	TCGA-BH-A0H7	THUMPD2	SNP	Missense_Mutation	2	39983082	C	T	32	78
BRCA	TCGA-BH-A0H7	USP34	SNP	Missense_Mutation	2	61417673	T	C	51	64
BRCA	TCGA-BH-A0H7	SPR	SNP	Silent	2	73118645	C	T	19	53
BRCA	TCGA-BH-A0H7	ASXL1	SNP	Missense_Mutation	20	31021655	A	G	4	75
BRCA	TCGA-BH-A0H7	CHD6	SNP	Nonsense_Mutation	20	40126068	G	A	38	87
BRCA	TCGA-BH-A0H7	PI3	SNP	Missense_Mutation	20	43804672	G	A	38	52
BRCA	TCGA-BH-A0H7	CDH26	SNP	Missense_Mutation	20	58571003	C	G	32	47
BRCA	TCGA-BH-A0H7	ANGPT4	SNP	Silent	20	865878	C	T	27	51
BRCA	TCGA-BH-A0H7	CDC45	SNP	Missense_Mutation	22	19504407	G	A	45	95
BRCA	TCGA-BH-A0H7	XPNPEP3	SNP	Nonsense_Mutation	22	41265020	C	T	17	69
BRCA	TCGA-BH-A0H7	HS6ST2	SNP	Missense_Mutation	23	131762517	G	A	40	65
BRCA	TCGA-BH-A0H7	GLRA2	SNP	Missense_Mutation	23	14627177	G	C	33	99
BRCA	TCGA-BH-A0H7	FAM47B	SNP	Missense_Mutation	23	34962578	G	A	47	54
BRCA	TCGA-BH-A0H7	IQSEC2	SNP	Missense_Mutation	23	53283878	G	A	37	95
BRCA	TCGA-BH-A0H7	SKIL	SNP	Missense_Mutation	3	170078760	A	G	4	68
BRCA	TCGA-BH-A0H7	TRAIP	SNP	Silent	3	49878478	C	A	30	57
BRCA	TCGA-BH-A0H7	SEC24B	SNP	Missense_Mutation	4	110394171	T	G	64	51
BRCA	TCGA-BH-A0H7	CHSY3	SNP	Missense_Mutation	5	129520729	G	A	45	84
BRCA	TCGA-BH-A0H7	GRXCR2	SNP	Missense_Mutation	5	145239466	G	A	41	56
BRCA	TCGA-BH-A0H7	EMB	SNP	Missense_Mutation	5	49707043	T	C	49	52
BRCA	TCGA-BH-A0H7	HOMER1	SNP	Missense_Mutation	5	78742884	G	C	44	87
BRCA	TCGA-BH-A0H7	GPR116	SNP	Silent	6	46830787	C	T	23	45
BRCA	TCGA-BH-A0H7	MOGAT3	SNP	Missense_Mutation	7	100839208	C	T	27	47
BRCA	TCGA-BH-A0H7	DGKB	SNP	Splice_Site	7	14216525	C	T	24	97
BRCA	TCGA-BH-A0H7	GIMAP6	SNP	Missense_Mutation	7	150324841	G	A	42	46
BRCA	TCGA-BH-A0H7	MIOS	SNP	Silent	7	7636043	A	T	12	57
BRCA	TCGA-BH-A0H7	FGL2	SNP	Missense_Mutation	7	76826243	C	G	29	83
BRCA	TCGA-BH-A0H7	CCDC146	SNP	Missense_Mutation	7	76871096	G	C	45	85
BRCA	TCGA-BH-A0H7	C8orf34	SNP	Missense_Mutation	8	69434116	C	T	22	91
BRCA	TCGA-BH-A0H7	PLEKHF2	SNP	Silent	8	96166776	T	C	55	51
BRCA	TCGA-BH-A0H7	LHX6	SNP	Silent	9	124971974	C	T	25	71
BRCA	TCGA-BH-A0H7	PRRC2B	SNP	Silent	9	134312031	G	A	38	96
BRCA	TCGA-BH-A0H7	CA9	SNP	Missense_Mutation	9	35676375	G	T	38	62
BRCA	TCGA-BH-A0H7	FAM75A3	SNP	Missense_Mutation	9	40705542	C	T	27	42
BRCA	TCGA-BH-A0H9	ZNF124	SNP	Silent	1	247320267	A	G	4	62
BRCA	TCGA-BH-A0H9	CLCA2	SNP	Silent	1	86919248	T	G	56	48
BRCA	TCGA-BH-A0H9	OBFC1	SNP	Missense_Mutation	10	105664860	T	C	54	56
BRCA	TCGA-BH-A0H9	ABI1	SNP	Missense_Mutation	10	27040638	G	A	43	99
BRCA	TCGA-BH-A0H9	USP54	SNP	Silent	10	75277121	A	C	11	54
BRCA	TCGA-BH-A0H9	NOC3L	SNP	Missense_Mutation	10	96121599	G	A	37	72
BRCA	TCGA-BH-A0H9	DGKA	SNP	Missense_Mutation	12	56347471	C	G	29	60
BRCA	TCGA-BH-A0H9	KL	SNP	Missense_Mutation	13	33634928	A	G	14	79
BRCA	TCGA-BH-A0H9	SERPINA9	SNP	Missense_Mutation	14	94933642	G	C	46	51
BRCA	TCGA-BH-A0H9	CTRL	SNP	Splice_site	16	67964902	C	T	30	52
BRCA	TCGA-BH-A0H9	NF1	SNP	Missense_Mutation	17	29685563	A	G	4	88
BRCA	TCGA-BH-A0H9	CA11	DEL	Frame_Shift_Del	19	49147687	CTCTC	-	32	57
BRCA	TCGA-BH-A0H9	IL18RAP	SNP	Missense_Mutation	2	103039784	G	A	37	49
BRCA	TCGA-BH-A0H9	COBLL1	SNP	Missense_Mutation	2	165551456	C	T	29	51
BRCA	TCGA-BH-A0H9	TTN	SNP	Missense_Mutation	2	179604078	A	G	12	60
BRCA	TCGA-BH-A0H9	BMPR2	SNP	Silent	2	203417447	G	A	44	51
BRCA	TCGA-BH-A0H9	TOX2	SNP	Silent	20	42680113	G	A	38	50
BRCA	TCGA-BH-A0H9	ARFGEF2	SNP	Missense_Mutation	20	47601333	G	A	45	87
BRCA	TCGA-BH-A0H9	TCFL5	SNP	Silent	20	61488983	C	T	27	62
BRCA	TCGA-BH-A0H9	NKAIN4	SNP	Missense_Mutation	20	61881347	G	C	45	51
BRCA	TCGA-BH-A0H9	MAGEB4	SNP	Missense_Mutation	23	30260727	G	A	41	56
BRCA	TCGA-BH-A0H9	DMD	SNP	Missense_Mutation	23	31950337	C	G	32	85
BRCA	TCGA-BH-A0H9	MAOA	INS	Frame_Shift_Ins	23	43603045	-	T	12	58
BRCA	TCGA-BH-A0H9	ELK1	SNP	Missense_Mutation	23	47500696	G	A	40	78
BRCA	TCGA-BH-A0H9	PQBP1	SNP	Missense_Mutation	23	48758524	C	T	26	66
BRCA	TCGA-BH-A0H9	KIAA2022	SNP	Missense_Mutation	23	73961666	G	A	42	67
BRCA	TCGA-BH-A0H9	ATP7A	SNP	Missense_Mutation	23	77244986	T	C	50	90
BRCA	TCGA-BH-A0H9	PLCL2	SNP	Nonsense_Mutation	3	17052713	C	A	25	47
BRCA	TCGA-BH-A0H9	PIK3CA	SNP	Missense_Mutation	3	178951964	G	C	47	98
BRCA	TCGA-BH-A0H9	LMOD3	SNP	Nonsense_Mutation	3	69168311	G	A	46	100
BRCA	TCGA-BH-A0H9	ACSL1	SNP	Silent	4	185678828	C	T	29	69
BRCA	TCGA-BH-A0H9	HNRPDL	SNP	Silent	4	83348622	C	T	17	48
BRCA	TCGA-BH-A0H9	PCDHGA3	SNP	Silent	5	140724038	G	A	39	42
BRCA	TCGA-BH-A0H9	ODZ2	SNP	Missense_Mutation	5	167671462	G	A	37	98
BRCA	TCGA-BH-A0H9	HIVEP2	SNP	Missense_Mutation	6	143093972	C	A	22	59
BRCA	TCGA-BH-A0H9	BTN3A1	SNP	Missense_Mutation	6	26406257	G	C	36	60
BRCA	TCGA-BH-A0H9	COL11A2	DEL	Frame_Shift_Del	6	33135615	C	-	27	49
BRCA	TCGA-BH-A0H9	PPP1R9A	DEL	Frame_Shift_Del	7	94540216	GAGGTGTT	-	37	44
BRCA	TCGA-BH-A0H9	RIMS2	SNP	Missense_Mutation	8	104709351	G	A	44	87
BRCA	TCGA-BH-A0H9	MCM4	SNP	Missense_Mutation	8	48887308	G	A	45	98
BRCA	TCGA-BH-A0H9	FABP9	SNP	Missense_Mutation	8	82371416	T	C	58	76
BRCA	TCGA-BH-A0H9	MELK	SNP	Silent	9	36643017	C	T	27	51
BRCA	TCGA-BH-A0H9	ALDH1A1	SNP	Missense_Mutation	9	75533714	C	A	25	87
BRCA	TCGA-BH-A0H9	PRUNE2	SNP	Missense_Mutation	9	79259823	G	T	41	51
BRCA	TCGA-BH-A0HA	DDX20	SNP	Missense_Mutation	1	112305336	T	C	60	89
BRCA	TCGA-BH-A0HA	KRTCAP2	SNP	Silent	1	155145235	A	G	10	55
BRCA	TCGA-BH-A0HA	SLC25A44	SNP	Missense_Mutation	1	156180034	G	A	45	93
BRCA	TCGA-BH-A0HA	KCNJ10	SNP	Missense_Mutation	1	160012073	C	T	19	64
BRCA	TCGA-BH-A0HA	CFH	SNP	Silent	1	196695952	C	T	22	49
BRCA	TCGA-BH-A0HA	DENND1B	SNP	Missense_Mutation	1	197480015	C	T	31	90
BRCA	TCGA-BH-A0HA	PKP1	DNP	Missense_Mutation	1	201282534	CG	TA	23	68
BRCA	TCGA-BH-A0HA	PRELP	SNP	Silent	1	203452615	G	A	38	34
BRCA	TCGA-BH-A0HA	BROX	SNP	Silent	1	222897497	A	G	2	58
BRCA	TCGA-BH-A0HA	MORN1	SNP	Missense_Mutation	1	2319730	C	T	19	38
BRCA	TCGA-BH-A0HA	NID1	SNP	Missense_Mutation	1	236212189	G	A	38	69
BRCA	TCGA-BH-A0HA	OR2W3	SNP	Silent	1	248058990	G	A	40	41
BRCA	TCGA-BH-A0HA	ADC	SNP	Missense_Mutation	1	33562360	G	A	42	78
BRCA	TCGA-BH-A0HA	ZNF362	SNP	Missense_Mutation	1	33745989	C	T	23	98
BRCA	TCGA-BH-A0HA	BMP8B	SNP	Missense_Mutation	1	40228838	A	G	13	84
BRCA	TCGA-BH-A0HA	PTPRF	SNP	Missense_Mutation	1	44069494	C	T	23	59
BRCA	TCGA-BH-A0HA	CHD5	SNP	Splice_site	1	6181297	C	T	26	59
BRCA	TCGA-BH-A0HA	L1TD1	SNP	Missense_Mutation	1	62672476	T	A	51	61
BRCA	TCGA-BH-A0HA	NOL9	SNP	Silent	1	6610529	G	A	36	49
BRCA	TCGA-BH-A0HA	FAM73A	SNP	Missense_Mutation	1	78272735	A	T	16	43
BRCA	TCGA-BH-A0HA	ARHGAP29	DEL	Frame_Shift_Del	1	94668215	TT	-	56	71
BRCA	TCGA-BH-A0HA	GBF1	SNP	Missense_Mutation	10	104122393	A	G	15	47
BRCA	TCGA-BH-A0HA	CCDC147	SNP	Missense_Mutation	10	106118199	A	G	9	79
BRCA	TCGA-BH-A0HA	ATRNL1	SNP	Missense_Mutation	10	117221463	T	C	52	88
BRCA	TCGA-BH-A0HA	TACC2	SNP	Missense_Mutation	10	123844494	G	C	45	49
BRCA	TCGA-BH-A0HA	CPXM2	SNP	Silent	10	125521407	G	T	35	51
BRCA	TCGA-BH-A0HA	MAP3K8	SNP	Missense_Mutation	10	30747044	G	T	35	96
BRCA	TCGA-BH-A0HA	ARHGAP22	SNP	Silent	10	49659122	C	T	23	32
BRCA	TCGA-BH-A0HA	SLC18A3	SNP	Missense_Mutation	10	50819070	C	T	26	50
BRCA	TCGA-BH-A0HA	ENSG00000214982	DEL	Frame_Shift_Del	10	51631508	T	-	58	51
BRCA	TCGA-BH-A0HA	MCU	SNP	Missense_Mutation	10	74618991	C	T	23	87
BRCA	TCGA-BH-A0HA	KAT6B	SNP	Silent	10	76789124	G	A	34	50
BRCA	TCGA-BH-A0HA	HECTD2	SNP	Missense_Mutation	10	93247499	G	C	33	44
BRCA	TCGA-BH-A0HA	SORBS1	SNP	Silent	10	97170460	G	A	46	73
BRCA	TCGA-BH-A0HA	MUC2	SNP	Silent	11	1101943	T	C	55	49
BRCA	TCGA-BH-A0HA	TIRAP	SNP	Silent	11	126162826	C	T	25	62
BRCA	TCGA-BH-A0HA	PIK3C2A	DEL	In_Frame_Del	11	17122898	AAC	-	1	92
BRCA	TCGA-BH-A0HA	MRGPRX1	SNP	Nonsense_Mutation	11	18955816	C	T	18	55
BRCA	TCGA-BH-A0HA	KIAA1549L	SNP	Missense_Mutation	11	33640180	G	A	39	75
BRCA	TCGA-BH-A0HA	NAT10	SNP	Missense_Mutation	11	34164994	A	G	14	89
BRCA	TCGA-BH-A0HA	LRP4	SNP	Missense_Mutation	11	46898298	T	C	59	90
BRCA	TCGA-BH-A0HA	OR5T2	SNP	Silent	11	55999765	C	T	29	46
BRCA	TCGA-BH-A0HA	C11orf84	SNP	Missense_Mutation	11	63585474	C	T	25	64
BRCA	TCGA-BH-A0HA	SPDYC	SNP	Missense_Mutation	11	64938932	G	A	38	42
BRCA	TCGA-BH-A0HA	RAD9A	DEL	In_Frame_Del	11	67163284	GAG	-	37	82
BRCA	TCGA-BH-A0HA	TBC1D10C	SNP	Silent	11	67171808	C	T	25	56
BRCA	TCGA-BH-A0HA	INTS4	SNP	Silent	11	77618841	A	G	5	60
BRCA	TCGA-BH-A0HA	CLEC2A	SNP	Splice_site	12	10078860	T	C	53	59
BRCA	TCGA-BH-A0HA	PIWIL1	SNP	Missense_Mutation	12	130833950	A	G	5	92
BRCA	TCGA-BH-A0HA	POLE	SNP	Silent	12	133220438	G	A	38	41
BRCA	TCGA-BH-A0HA	SLCO1B1	SNP	Missense_Mutation	12	21377736	C	T	19	54
BRCA	TCGA-BH-A0HA	FOXM1	SNP	Missense_Mutation	12	2968543	C	A	20	58
BRCA	TCGA-BH-A0HA	KCNH3	SNP	Missense_Mutation	12	49934840	G	A	40	63
BRCA	TCGA-BH-A0HA	PCBP2	SNP	Missense_Mutation	12	53848642	A	G	16	89
BRCA	TCGA-BH-A0HA	LGR5	SNP	Splice_Site	12	71974205	T	C	57	77
BRCA	TCGA-BH-A0HA	NALCN	SNP	Missense_Mutation	13	101714459	T	C	57	90
BRCA	TCGA-BH-A0HA	ATP12A	SNP	Silent	13	25272825	C	T	19	37
BRCA	TCGA-BH-A0HA	EDNRB	SNP	Missense_Mutation	13	78477305	T	C	58	68
BRCA	TCGA-BH-A0HA	RNF113B	SNP	Missense_Mutation	13	98828674	G	A	46	78
BRCA	TCGA-BH-A0HA	LOC100288131	SNP	Missense_Mutation	14	101194837	G	A	38	61
BRCA	TCGA-BH-A0HA	AHNAK2	SNP	Silent	14	105418263	C	T	19	50
BRCA	TCGA-BH-A0HA	RAB2B	DEL	In_Frame_Del	14	21944734	AGG	-	7	77
BRCA	TCGA-BH-A0HA	IL25	SNP	Missense_Mutation	14	23844943	T	C	54	69
BRCA	TCGA-BH-A0HA	MTHFD1	SNP	Missense_Mutation	14	64891576	C	T	26	100
BRCA	TCGA-BH-A0HA	SLC39A9	SNP	Missense_Mutation	14	69908917	G	A	40	98
BRCA	TCGA-BH-A0HA	NEK9	SNP	Silent	14	75577041	T	C	59	52
BRCA	TCGA-BH-A0HA	SAMD15	SNP	Missense_Mutation	14	77845125	T	A	64	47
BRCA	TCGA-BH-A0HA	TDP1	SNP	Silent	14	90429977	A	G	11	50
BRCA	TCGA-BH-A0HA	TM2D3	SNP	Missense_Mutation	15	102182699	C	A	21	96
BRCA	TCGA-BH-A0HA	THBS1	SNP	Silent	15	39885373	C	T	26	49
BRCA	TCGA-BH-A0HA	MAPKBP1	SNP	Silent	15	42110267	C	T	19	52
BRCA	TCGA-BH-A0HA	PPIP5K1	SNP	Silent	15	43831723	A	G	14	52
BRCA	TCGA-BH-A0HA	SLC27A2	SNP	Missense_Mutation	15	50526110	A	G	2	54
BRCA	TCGA-BH-A0HA	WDR72	SNP	Splice_site	15	54025194	C	T	24	65
BRCA	TCGA-BH-A0HA	SLC24A1	INS	In_Frame_Ins	15	65918176	-	CTG	26	78
BRCA	TCGA-BH-A0HA	RAB11A	SNP	Nonsense_Mutation	15	66180167	C	T	29	100
BRCA	TCGA-BH-A0HA	TBC1D21	SNP	Missense_Mutation	15	74177124	C	T	19	62
BRCA	TCGA-BH-A0HA	MAN2A2	SNP	Silent	15	91453858	C	A	29	100
BRCA	TCGA-BH-A0HA	ABCC1	SNP	Missense_Mutation	16	16218677	A	G	5	77
BRCA	TCGA-BH-A0HA	TRAF7	SNP	Splice_site	16	2220730	C	T	23	59
BRCA	TCGA-BH-A0HA	SH2B1	SNP	Silent	16	28884850	G	A	40	64
BRCA	TCGA-BH-A0HA	KIF22	SNP	Missense_Mutation	16	29809769	A	G	6	87
BRCA	TCGA-BH-A0HA	ZNF785	SNP	Silent	16	30594700	C	T	27	40
BRCA	TCGA-BH-A0HA	PRSS8	SNP	Missense_Mutation	16	31143790	A	C	6	74
BRCA	TCGA-BH-A0HA	VPS4A	DEL	Frame_Shift_Del	16	69358203	AG	-	3	56
BRCA	TCGA-BH-A0HA	STUB1	DEL	In_Frame_Del	16	731505	GAA	-	37	55
BRCA	TCGA-BH-A0HA	GRIN2A	SNP	Missense_Mutation	16	9858202	G	A	37	62
BRCA	TCGA-BH-A0HA	MAP2K4	SNP	Splice_Site	17	12028690	T	C	57	90
BRCA	TCGA-BH-A0HA	FLII	SNP	Missense_Mutation	17	18149770	G	A	40	74
BRCA	TCGA-BH-A0HA	SUPT6H	INS	In_Frame_Ins	17	27027201	-	AGC	53	61
BRCA	TCGA-BH-A0HA	RHOT1	SNP	Missense_Mutation	17	30521111	A	G	9	93
BRCA	TCGA-BH-A0HA	PIGW	SNP	Missense_Mutation	17	34893944	C	G	17	58
BRCA	TCGA-BH-A0HA	NR1D1	SNP	Missense_Mutation	17	38252334	C	T	19	83
BRCA	TCGA-BH-A0HA	KRTAP4-2	SNP	Missense_Mutation	17	39334274	G	A	39	68
BRCA	TCGA-BH-A0HA	QRICH2	SNP	Missense_Mutation	17	74278024	C	T	23	52
BRCA	TCGA-BH-A0HA	GPS1	SNP	Splice_Site	17	80010320	T	C	57	50
BRCA	TCGA-BH-A0HA	PER1	SNP	Silent	17	8048217	G	A	40	50
BRCA	TCGA-BH-A0HA	TBCD	SNP	Missense_Mutation	17	80895232	G	A	38	50
BRCA	TCGA-BH-A0HA	LAMA3	SNP	Splice_Site	18	21419894	G	T	44	81
BRCA	TCGA-BH-A0HA	OSBPL1A	SNP	Splice_site	18	21759703	G	A	38	65
BRCA	TCGA-BH-A0HA	GALNT1	SNP	Silent	18	33234665	C	T	24	74
BRCA	TCGA-BH-A0HA	MBD1	SNP	Missense_Mutation	18	47803052	G	A	40	77
BRCA	TCGA-BH-A0HA	CDH20	SNP	Missense_Mutation	18	59157855	G	T	43	57
BRCA	TCGA-BH-A0HA	RTTN	SNP	Missense_Mutation	18	67698148	C	A	26	82
BRCA	TCGA-BH-A0HA	FBXO15	SNP	Missense_Mutation	18	71807443	A	G	7	71
BRCA	TCGA-BH-A0HA	ADNP2	SNP	Silent	18	77895840	C	T	20	59
BRCA	TCGA-BH-A0HA	CDKN2D	SNP	Silent	19	10677827	G	A	40	48
BRCA	TCGA-BH-A0HA	GTPBP3	SNP	Missense_Mutation	19	17450401	C	T	23	66
BRCA	TCGA-BH-A0HA	PPAP2C	SNP	Missense_Mutation	19	287568	C	T	19	73
BRCA	TCGA-BH-A0HA	SHD	SNP	Missense_Mutation	19	4280122	C	A	22	89
BRCA	TCGA-BH-A0HA	MEGF8	DEL	In_Frame_Del	19	42841287	TCT	-	50	83
BRCA	TCGA-BH-A0HA	HDGFRP2	INS	In_Frame_Ins	19	4493798	-	TCC	56	41
BRCA	TCGA-BH-A0HA	GRWD1	SNP	Silent	19	48953639	C	T	28	79
BRCA	TCGA-BH-A0HA	GYS1	SNP	Missense_Mutation	19	49490492	C	T	27	74
BRCA	TCGA-BH-A0HA	RPS5	SNP	Missense_Mutation	19	58904783	A	G	6	84
BRCA	TCGA-BH-A0HA	TUBB4A	SNP	Silent	19	6495769	G	A	40	54
BRCA	TCGA-BH-A0HA	ENSG00000186629	SNP	Missense_Mutation	19	6986335	C	A	24	46
BRCA	TCGA-BH-A0HA	CAMSAP3	SNP	Missense_Mutation	19	7676815	C	T	26	90
BRCA	TCGA-BH-A0HA	R3HDM4	SNP	Silent	19	900926	G	T	39	32
BRCA	TCGA-BH-A0HA	ANAPC1	SNP	Missense_Mutation	2	112560009	A	G	3	73
BRCA	TCGA-BH-A0HA	FOXD4L1	SNP	Missense_Mutation	2	114257228	G	A	42	66
BRCA	TCGA-BH-A0HA	LCT	SNP	Missense_Mutation	2	136558374	A	T	11	72
BRCA	TCGA-BH-A0HA	TPO	SNP	Splice_Site	2	1440158	T	C	57	73
BRCA	TCGA-BH-A0HA	SCN3A	SNP	Missense_Mutation	2	165996102	G	A	40	87
BRCA	TCGA-BH-A0HA	TTN	SNP	Missense_Mutation	2	179430671	A	G	14	93
BRCA	TCGA-BH-A0HA	MYT1L	INS	In_Frame_Ins	2	1946770	-	TCC	56	50
BRCA	TCGA-BH-A0HA	DYTN	SNP	Missense_Mutation	2	207527867	C	T	26	50
BRCA	TCGA-BH-A0HA	PRKD3	SNP	Splice_site	2	37507071	T	C	60	50
BRCA	TCGA-BH-A0HA	EPAS1	SNP	Nonsense_Mutation	2	46607728	G	A	42	96
BRCA	TCGA-BH-A0HA	NRXN1	SNP	Silent	2	50758375	C	T	23	63
BRCA	TCGA-BH-A0HA	LOXL3	SNP	Missense_Mutation	2	74761116	A	T	10	87
BRCA	TCGA-BH-A0HA	CPSF3	DEL	In_Frame_Del	2	9570133	CTC	-	32	72
BRCA	TCGA-BH-A0HA	ANKRD36	SNP	Silent	2	97868069	C	T	19	38
BRCA	TCGA-BH-A0HA	LYG2	SNP	Missense_Mutation	2	99858889	C	T	32	68
BRCA	TCGA-BH-A0HA	FLRT3	SNP	Missense_Mutation	20	14307596	C	T	27	100
BRCA	TCGA-BH-A0HA	RIN2	SNP	Silent	20	19915793	G	A	46	57
BRCA	TCGA-BH-A0HA	NAA20	SNP	Splice_site	20	20003100	T	C	57	60
BRCA	TCGA-BH-A0HA	ADNP	SNP	Silent	20	49508350	G	A	40	47
BRCA	TCGA-BH-A0HA	BIRC7	SNP	Missense_Mutation	20	61869314	G	A	39	76
BRCA	TCGA-BH-A0HA	ITGB2	SNP	Missense_Mutation	21	46310051	T	C	58	75
BRCA	TCGA-BH-A0HA	MCM3AP	SNP	Missense_Mutation	21	47663439	C	T	27	57
BRCA	TCGA-BH-A0HA	POTEH	SNP	Silent	22	16287406	G	A	40	40
BRCA	TCGA-BH-A0HA	TXNRD2	SNP	Silent	22	19903309	G	A	38	32
BRCA	TCGA-BH-A0HA	TOP3B	SNP	Missense_Mutation	22	22326278	C	T	31	87
BRCA	TCGA-BH-A0HA	LIMK2	SNP	Missense_Mutation	22	31658675	C	T	26	78
BRCA	TCGA-BH-A0HA	C1QTNF6	SNP	Missense_Mutation	22	37578518	A	G	2	91
BRCA	TCGA-BH-A0HA	CACNA1I	SNP	Splice_site	22	40043828	T	C	51	55
BRCA	TCGA-BH-A0HA	PLXNB2	SNP	Silent	22	50727190	G	A	40	52
BRCA	TCGA-BH-A0HA	SBF1	SNP	Missense_Mutation	22	50906253	C	T	27	74
BRCA	TCGA-BH-A0HA	LUZP4	SNP	Missense_Mutation	23	114536623	A	G	2	41
BRCA	TCGA-BH-A0HA	ODZ1	SNP	Silent	23	123657271	C	T	27	48
BRCA	TCGA-BH-A0HA	GPR101	SNP	Missense_Mutation	23	136113257	T	C	59	57
BRCA	TCGA-BH-A0HA	FMR1	SNP	Missense_Mutation	23	147026442	G	A	37	95
BRCA	TCGA-BH-A0HA	IDS	SNP	Missense_Mutation	23	148579795	C	T	25	93
BRCA	TCGA-BH-A0HA	GDI1	SNP	Splice_site	23	153667353	G	A	42	47
BRCA	TCGA-BH-A0HA	CNKSR2	INS	In_Frame_Ins	23	21627677	-	GAG	3	55
BRCA	TCGA-BH-A0HA	ZNF645	SNP	Nonsense_Mutation	23	22292144	C	T	29	59
BRCA	TCGA-BH-A0HA	POLA1	SNP	Silent	23	24830822	T	C	63	49
BRCA	TCGA-BH-A0HA	MAGEB4	SNP	Silent	23	30260720	G	A	34	47
BRCA	TCGA-BH-A0HA	FAM47A	SNP	Missense_Mutation	23	34148695	A	T	12	42
BRCA	TCGA-BH-A0HA	FAM47A	SNP	Missense_Mutation	23	34150200	C	T	31	57
BRCA	TCGA-BH-A0HA	KDM6A	SNP	Missense_Mutation	23	44945128	A	G	2	87
BRCA	TCGA-BH-A0HA	TRO	SNP	Missense_Mutation	23	54956207	T	C	58	41
BRCA	TCGA-BH-A0HA	FAM123B	SNP	Missense_Mutation	23	63411278	G	A	42	56
BRCA	TCGA-BH-A0HA	ZC4H2	SNP	Missense_Mutation	23	64137672	C	T	24	41
BRCA	TCGA-BH-A0HA	PJA1	SNP	Missense_Mutation	23	68382828	G	A	37	66
BRCA	TCGA-BH-A0HA	NLGN3	SNP	Missense_Mutation	23	70389300	C	A	24	97
BRCA	TCGA-BH-A0HA	ABCB7	SNP	Missense_Mutation	23	74296459	T	C	61	85
BRCA	TCGA-BH-A0HA	SH3BGRL	SNP	Missense_Mutation	23	80457737	C	T	32	73
BRCA	TCGA-BH-A0HA	IMPG2	DEL	In_Frame_Del	3	100992437	TTC	-	52	45
BRCA	TCGA-BH-A0HA	MYH15	SNP	Missense_Mutation	3	108129537	T	C	55	57
BRCA	TCGA-BH-A0HA	MYH15	SNP	Missense_Mutation	3	108189615	G	A	42	58
BRCA	TCGA-BH-A0HA	ADCY5	SNP	Missense_Mutation	3	123010174	C	T	23	97
BRCA	TCGA-BH-A0HA	SMC4	SNP	Silent	3	160131390	A	G	3	57
BRCA	TCGA-BH-A0HA	PLD1	SNP	Silent	3	171431831	A	G	2	55
BRCA	TCGA-BH-A0HA	PIK3CA	DEL	In_Frame_Del	3	178916938	GAA	-	45	97
BRCA	TCGA-BH-A0HA	VWA5B2	SNP	Silent	3	183954187	C	T	22	48
BRCA	TCGA-BH-A0HA	ATP13A4	SNP	Splice_Site	3	193183869	A	G	14	75
BRCA	TCGA-BH-A0HA	MLH1	SNP	Nonsense_Mutation	3	37042542	G	T	45	96
BRCA	TCGA-BH-A0HA	WDR6	SNP	Missense_Mutation	3	49049490	A	G	8	48
BRCA	TCGA-BH-A0HA	DALRD3	DEL	Frame_Shift_Del	3	49053683	GT	-	36	93
BRCA	TCGA-BH-A0HA	BAP1	SNP	Missense_Mutation	3	52440905	T	C	54	93
BRCA	TCGA-BH-A0HA	LRTM1	SNP	Missense_Mutation	3	54952776	C	T	25	56
BRCA	TCGA-BH-A0HA	FAM208A	SNP	Missense_Mutation	3	56667416	C	T	29	78
BRCA	TCGA-BH-A0HA	CENPE	SNP	Missense_Mutation	4	104096015	T	C	61	55
BRCA	TCGA-BH-A0HA	SEC24B	SNP	Missense_Mutation	4	110442315	A	G	16	79
BRCA	TCGA-BH-A0HA	SEC24D	SNP	Missense_Mutation	4	119745855	C	T	17	53
BRCA	TCGA-BH-A0HA	CRIPAK	SNP	Silent	4	1389289	C	T	23	51
BRCA	TCGA-BH-A0HA	MAML3	SNP	Silent	4	140640648	T	C	56	46
BRCA	TCGA-BH-A0HA	ADAM29	SNP	Missense_Mutation	4	175897313	C	T	31	59
BRCA	TCGA-BH-A0HA	ODZ3	SNP	Nonsense_Mutation	4	183714372	C	T	31	83
BRCA	TCGA-BH-A0HA	SLC34A2	SNP	Missense_Mutation	4	25675985	C	A	29	60
BRCA	TCGA-BH-A0HA	HGFAC	SNP	Missense_Mutation	4	3451048	C	T	27	49
BRCA	TCGA-BH-A0HA	SLC30A9	SNP	Missense_Mutation	4	42065022	C	T	27	100
BRCA	TCGA-BH-A0HA	POLR2B	DEL	Frame_Shift_Del	4	57896449	TTGT	-	52	50
BRCA	TCGA-BH-A0HA	PDE6B	SNP	Missense_Mutation	4	660344	G	A	42	79
BRCA	TCGA-BH-A0HA	TMPRSS11F	SNP	Missense_Mutation	4	68925078	G	A	34	79
BRCA	TCGA-BH-A0HA	UGT2B4	SNP	Silent	4	70350946	C	T	32	44
BRCA	TCGA-BH-A0HA	SLC2A9	SNP	Missense_Mutation	4	9828107	C	T	26	58
BRCA	TCGA-BH-A0HA	NKD2	SNP	Splice_Site	5	1033615	G	A	40	66
BRCA	TCGA-BH-A0HA	APC	SNP	Missense_Mutation	5	112175041	A	C	3	62
BRCA	TCGA-BH-A0HA	DNAH5	SNP	Silent	5	13871098	G	A	37	46
BRCA	TCGA-BH-A0HA	PCDHGA3	SNP	Missense_Mutation	5	140724340	A	G	14	92
BRCA	TCGA-BH-A0HA	PCDHGB7	SNP	Missense_Mutation	5	140799608	G	C	45	60
BRCA	TCGA-BH-A0HA	SQSTM1	SNP	Missense_Mutation	5	179260660	C	T	23	94
BRCA	TCGA-BH-A0HA	UGT3A1	SNP	Missense_Mutation	5	35955790	C	T	31	59
BRCA	TCGA-BH-A0HA	ADAMTS16	SNP	Silent	5	5242243	T	A	55	22
BRCA	TCGA-BH-A0HA	FAM151B	SNP	Silent	5	79797660	T	C	61	53
BRCA	TCGA-BH-A0HA	LOC100131573	DEL	In_Frame_Del	5	93928714	AGA	-	7	67
BRCA	TCGA-BH-A0HA	CAST	SNP	Silent	5	96101008	A	G	2	49
BRCA	TCGA-BH-A0HA	RFX6	SNP	Missense_Mutation	6	117248313	C	A	21	64
BRCA	TCGA-BH-A0HA	MED23	DEL	Frame_Shift_Del	6	131923494	TA	-	61	51
BRCA	TCGA-BH-A0HA	HIVEP2	SNP	Missense_Mutation	6	143095539	T	C	59	56
BRCA	TCGA-BH-A0HA	LTV1	SNP	Missense_Mutation	6	144179065	G	A	38	98
BRCA	TCGA-BH-A0HA	ALDH5A1	SNP	Missense_Mutation	6	24502792	A	G	14	43
BRCA	TCGA-BH-A0HA	BTN2A1	SNP	Missense_Mutation	6	26468547	G	A	40	51
BRCA	TCGA-BH-A0HA	VPS52	SNP	Missense_Mutation	6	33235071	C	T	28	93
BRCA	TCGA-BH-A0HA	ARMC12	SNP	Missense_Mutation	6	35715084	C	T	19	57
BRCA	TCGA-BH-A0HA	FGD2	SNP	Missense_Mutation	6	36978804	C	T	27	65
BRCA	TCGA-BH-A0HA	KIAA0240	SNP	Missense_Mutation	6	42797791	C	T	26	67
BRCA	TCGA-BH-A0HA	CUL7	SNP	Missense_Mutation	6	43005511	A	G	11	55
BRCA	TCGA-BH-A0HA	DST	DEL	In_Frame_Del	6	56495093	CTT	-	28	67
BRCA	TCGA-BH-A0HA	RWDD2A	SNP	Missense_Mutation	6	83904358	T	C	52	83
BRCA	TCGA-BH-A0HA	FLNC	SNP	Missense_Mutation	7	128488091	G	A	40	100
BRCA	TCGA-BH-A0HA	ZNF786	SNP	Missense_Mutation	7	148769157	A	G	14	50
BRCA	TCGA-BH-A0HA	ZNF282	SNP	Missense_Mutation	7	148921569	A	G	9	52
BRCA	TCGA-BH-A0HA	GALNTL5	SNP	Splice_Site	7	151699798	G	A	35	96
BRCA	TCGA-BH-A0HA	GALNT11	SNP	Missense_Mutation	7	151805352	G	T	35	41
BRCA	TCGA-BH-A0HA	KLHL7	DEL	In_Frame_Del	7	23145676	AAG	-	5	81
BRCA	TCGA-BH-A0HA	FKBP9	SNP	Silent	7	33044891	G	A	41	50
BRCA	TCGA-BH-A0HA	TRIM50	INS	Frame_Shift_Ins	7	72730631	-	T	28	61
BRCA	TCGA-BH-A0HA	FZD9	SNP	Missense_Mutation	7	72849076	G	A	38	69
BRCA	TCGA-BH-A0HA	DTX2	SNP	Missense_Mutation	7	76126704	C	T	23	63
BRCA	TCGA-BH-A0HA	GRM3	SNP	Nonsense_Mutation	7	86468223	C	T	27	60
BRCA	TCGA-BH-A0HA	CROT	SNP	Missense_Mutation	7	86998781	A	G	6	88
BRCA	TCGA-BH-A0HA	ARPC1B	SNP	Silent	7	98991736	T	C	51	44
BRCA	TCGA-BH-A0HA	AP4M1	SNP	Nonsense_Mutation	7	99704464	C	T	27	57
BRCA	TCGA-BH-A0HA	TMEM74	SNP	Missense_Mutation	8	109796495	A	G	9	93
BRCA	TCGA-BH-A0HA	WISP1	SNP	Missense_Mutation	8	134237699	G	A	46	100
BRCA	TCGA-BH-A0HA	XPO7	SNP	Missense_Mutation	8	21844747	G	A	40	100
BRCA	TCGA-BH-A0HA	CSMD1	SNP	Missense_Mutation	8	2815319	G	A	40	53
BRCA	TCGA-BH-A0HA	MBOAT4	SNP	Silent	8	29990074	T	C	58	40
BRCA	TCGA-BH-A0HA	FUT10	SNP	Splice_Site	8	33318928	A	G	6	63
BRCA	TCGA-BH-A0HA	GINS4	SNP	Silent	8	41397268	G	A	38	45
BRCA	TCGA-BH-A0HA	PEX2	SNP	Silent	8	77896091	A	G	1	53
BRCA	TCGA-BH-A0HA	DCAF4L2	SNP	Missense_Mutation	8	88885440	G	A	38	60
BRCA	TCGA-BH-A0HA	INTS8	SNP	Nonsense_Mutation	8	95869179	C	T	19	82
BRCA	TCGA-BH-A0HA	FKBP15	SNP	Missense_Mutation	9	115936859	A	G	11	81
BRCA	TCGA-BH-A0HA	TRIM32	SNP	Nonsense_Mutation	9	119460577	C	T	21	97
BRCA	TCGA-BH-A0HA	SLC27A4	SNP	Splice_Site	9	131115028	T	C	59	86
BRCA	TCGA-BH-A0HA	CRAT	SNP	Missense_Mutation	9	131864323	T	C	50	75
BRCA	TCGA-BH-A0HA	DPP7	SNP	Missense_Mutation	9	140006430	A	G	2	71
BRCA	TCGA-BH-A0HA	ADAMTSL1	SNP	Silent	9	18775842	G	A	38	17
BRCA	TCGA-BH-A0HA	IFNA16	SNP	Missense_Mutation	9	21216922	C	T	22	52
BRCA	TCGA-BH-A0HA	NPR2	SNP	Missense_Mutation	9	35792578	G	A	39	61
BRCA	TCGA-BH-A0HA	PRUNE2	SNP	Missense_Mutation	9	79319782	G	A	42	51
BRCA	TCGA-BH-A0HA	ZCCHC6	SNP	Missense_Mutation	9	88938113	T	C	58	68
BRCA	TCGA-BH-A0HB	PDE4DIP	SNP	Missense_Mutation	1	144879284	G	A	37	92
BRCA	TCGA-BH-A0HB	CLCNKB	SNP	Missense_Mutation	1	16376146	G	A	39	49
BRCA	TCGA-BH-A0HB	MYCL1	SNP	Missense_Mutation	1	40363231	G	A	38	87
BRCA	TCGA-BH-A0HB	LEPR	DEL	Frame_Shift_Del	1	66083718	C	-	18	66
BRCA	TCGA-BH-A0HB	FBXO18	SNP	Splice_Site	10	5963220	G	T	33	96
BRCA	TCGA-BH-A0HB	MMP13	SNP	Missense_Mutation	11	102826428	G	T	41	50
BRCA	TCGA-BH-A0HB	APOA4	SNP	Silent	11	116692402	G	A	37	50
BRCA	TCGA-BH-A0HB	LRIG3	SNP	Missense_Mutation	12	59271349	C	T	25	100
BRCA	TCGA-BH-A0HB	FAM90A1	SNP	Silent	12	8374829	C	T	23	39
BRCA	TCGA-BH-A0HB	NUPL1	SNP	Silent	13	25905699	C	T	32	99
BRCA	TCGA-BH-A0HB	FEM1B	SNP	Missense_Mutation	15	68582349	A	T	8	91
BRCA	TCGA-BH-A0HB	PRKCB	SNP	Missense_Mutation	16	24192242	C	T	26	100
BRCA	TCGA-BH-A0HB	EFCAB5	SNP	Missense_Mutation	17	28381157	C	T	29	48
BRCA	TCGA-BH-A0HB	VEZF1	SNP	Missense_Mutation	17	56060288	C	G	20	83
BRCA	TCGA-BH-A0HB	METRNL	SNP	Missense_Mutation	17	81052054	G	A	34	57
BRCA	TCGA-BH-A0HB	LRRC30	SNP	Missense_Mutation	18	7231362	C	G	20	100
BRCA	TCGA-BH-A0HB	RPSAP58	SNP	Nonsense_Mutation	19	24010490	G	A	47	82
BRCA	TCGA-BH-A0HB	PRKCG	SNP	Missense_Mutation	19	54395012	G	A	39	62
BRCA	TCGA-BH-A0HB	ST6GAL2	SNP	Silent	2	107459975	G	A	39	45
BRCA	TCGA-BH-A0HB	ACVR2A	SNP	Missense_Mutation	2	148657378	C	G	20	70
BRCA	TCGA-BH-A0HB	SPHKAP	SNP	Missense_Mutation	2	228996728	C	T	23	48
BRCA	TCGA-BH-A0HB	L3MBTL1	SNP	Missense_Mutation	20	42169439	G	A	38	61
BRCA	TCGA-BH-A0HB	CHEK2	SNP	Missense_Mutation	22	29092948	G	A	39	62
BRCA	TCGA-BH-A0HB	NR3C2	SNP	Missense_Mutation	4	149357669	G	A	34	98
BRCA	TCGA-BH-A0HB	LRBA	SNP	Nonsense_Mutation	4	151412073	T	A	55	78
BRCA	TCGA-BH-A0HB	LDB2	SNP	Silent	4	16504398	C	T	23	55
BRCA	TCGA-BH-A0HB	CDS1	SNP	Silent	4	85540676	C	T	32	54
BRCA	TCGA-BH-A0HB	ARHGAP24	SNP	Missense_Mutation	4	86898785	C	T	19	100
BRCA	TCGA-BH-A0HB	CCNJL	SNP	Silent	5	159686723	C	T	31	48
BRCA	TCGA-BH-A0HB	DOCK2	SNP	Silent	5	169477280	C	T	27	39
BRCA	TCGA-BH-A0HB	IFNA14	SNP	Missense_Mutation	9	21239924	G	A	43	45
BRCA	TCGA-BH-A0HB	TAF1L	SNP	Missense_Mutation	9	32634836	C	T	31	63
BRCA	TCGA-BH-A0HI	SEMA6C	SNP	Missense_Mutation	1	151111915	G	A	40	62
BRCA	TCGA-BH-A0HI	RYR2	SNP	Silent	1	237954734	T	C	52	68
BRCA	TCGA-BH-A0HI	MYPN	SNP	Missense_Mutation	10	69934047	C	T	18	63
BRCA	TCGA-BH-A0HI	HSPA8	DEL	In_Frame_Del	11	122930294	AGG	-	7	90
BRCA	TCGA-BH-A0HI	NRXN2	SNP	Missense_Mutation	11	64421180	C	T	23	76
BRCA	TCGA-BH-A0HI	VEZT	SNP	Missense_Mutation	12	95645809	G	A	33	70
BRCA	TCGA-BH-A0HI	TRIP11	SNP	Splice_Site	14	92460257	C	T	32	87
BRCA	TCGA-BH-A0HI	GINS2	DEL	Frame_Shift_Del	16	85711840	CTCT	-	20	58
BRCA	TCGA-BH-A0HI	MTMR4	SNP	Missense_Mutation	17	56581178	C	G	21	63
BRCA	TCGA-BH-A0HI	LOXHD1	SNP	Missense_Mutation	18	44122702	G	A	47	96
BRCA	TCGA-BH-A0HI	MAST1	SNP	Missense_Mutation	19	12969490	G	A	44	93
BRCA	TCGA-BH-A0HI	ZEB2	SNP	Missense_Mutation	2	145158777	C	T	31	100
BRCA	TCGA-BH-A0HI	TTN	SNP	Missense_Mutation	2	179427389	T	C	57	56
BRCA	TCGA-BH-A0HI	SULF2	SNP	Missense_Mutation	20	46307432	C	T	23	71
BRCA	TCGA-BH-A0HI	PLXNB3	SNP	Silent	23	153033170	G	A	39	30
BRCA	TCGA-BH-A0HI	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-BH-A0HI	OR5H1	SNP	Silent	3	97851563	T	C	52	46
BRCA	TCGA-BH-A0HI	PDE6B	SNP	Missense_Mutation	4	658672	C	T	26	88
BRCA	TCGA-BH-A0HI	RGMB	SNP	Silent	5	98115336	C	T	31	47
BRCA	TCGA-BH-A0HI	ZNF184	SNP	Missense_Mutation	6	27419341	C	T	22	72
BRCA	TCGA-BH-A0HI	TRBC1	SNP	Missense_Mutation	7	142428804	G	T	37	73
BRCA	TCGA-BH-A0HI	SLC26A7	SNP	Missense_Mutation	8	92406479	C	A	32	43
BRCA	TCGA-BH-A0HI	TLR4	SNP	Missense_Mutation	9	120474783	C	T	29	54
BRCA	TCGA-BH-A0HI	FAM129B	SNP	Missense_Mutation	9	130289586	G	A	38	69
BRCA	TCGA-BH-A0HK	MAN1A2	SNP	Silent	1	117944862	G	A	47	50
BRCA	TCGA-BH-A0HK	GJA8	SNP	Silent	1	147381246	G	A	39	32
BRCA	TCGA-BH-A0HK	TUFT1	SNP	Silent	1	151536442	G	A	33	59
BRCA	TCGA-BH-A0HK	LCE2D	SNP	Missense_Mutation	1	152636817	G	A	40	44
BRCA	TCGA-BH-A0HK	KIF21B	SNP	Missense_Mutation	1	200973964	G	A	45	100
BRCA	TCGA-BH-A0HK	RASSF5	DEL	Frame_Shift_Del	1	206730957	A	-	9	81
BRCA	TCGA-BH-A0HK	PROX1	SNP	Missense_Mutation	1	214171121	G	A	40	100
BRCA	TCGA-BH-A0HK	WNT3A	SNP	Missense_Mutation	1	228210498	G	A	37	96
BRCA	TCGA-BH-A0HK	CCSAP	SNP	Missense_Mutation	1	229462694	C	G	29	55
BRCA	TCGA-BH-A0HK	FMN2	SNP	Missense_Mutation	1	240255687	C	T	30	96
BRCA	TCGA-BH-A0HK	AHDC1	SNP	Silent	1	27878126	G	A	33	63
BRCA	TCGA-BH-A0HK	SSBP3	SNP	Missense_Mutation	1	54704821	G	T	35	71
BRCA	TCGA-BH-A0HK	KANK4	SNP	Missense_Mutation	1	62738879	C	T	20	46
BRCA	TCGA-BH-A0HK	CAMTA1	SNP	Missense_Mutation	1	7723467	C	G	31	98
BRCA	TCGA-BH-A0HK	COL17A1	SNP	Missense_Mutation	10	105836073	C	T	27	73
BRCA	TCGA-BH-A0HK	C10orf120	SNP	Silent	10	124457606	G	A	43	21
BRCA	TCGA-BH-A0HK	MGMT	SNP	Missense_Mutation	10	131557478	G	A	33	62
BRCA	TCGA-BH-A0HK	CSTF2T	SNP	Missense_Mutation	10	53457893	C	T	21	53
BRCA	TCGA-BH-A0HK	RNLS	SNP	Silent	10	90341439	G	A	38	42
BRCA	TCGA-BH-A0HK	PI4K2A	SNP	Silent	10	99410715	C	T	29	77
BRCA	TCGA-BH-A0HK	AMBRA1	SNP	Silent	11	46567261	C	T	23	59
BRCA	TCGA-BH-A0HK	MTA2	SNP	Missense_Mutation	11	62363528	C	T	29	68
BRCA	TCGA-BH-A0HK	SLCO2B1	SNP	Silent	11	74880255	G	T	46	50
BRCA	TCGA-BH-A0HK	CCDC63	SNP	Missense_Mutation	12	111319049	G	A	40	40
BRCA	TCGA-BH-A0HK	CCDC62	SNP	Missense_Mutation	12	123285673	G	C	33	59
BRCA	TCGA-BH-A0HK	CCDC62	SNP	Missense_Mutation	12	123285827	G	C	33	53
BRCA	TCGA-BH-A0HK	MLL2	SNP	Silent	12	49428419	G	A	33	55
BRCA	TCGA-BH-A0HK	AHNAK2	SNP	Missense_Mutation	14	105420827	G	A	38	50
BRCA	TCGA-BH-A0HK	TOX4	SNP	Missense_Mutation	14	21964747	G	A	36	78
BRCA	TCGA-BH-A0HK	SYNE2	SNP	Silent	14	64457239	C	T	29	53
BRCA	TCGA-BH-A0HK	NRXN3	SNP	Silent	14	79111725	C	T	19	67
BRCA	TCGA-BH-A0HK	LOC653061	SNP	Missense_Mutation	15	23605389	G	A	38	40
BRCA	TCGA-BH-A0HK	CASC4	SNP	Missense_Mutation	15	44581304	T	C	58	60
BRCA	TCGA-BH-A0HK	HSP90AB4P	SNP	Missense_Mutation	15	58983795	G	T	33	65
BRCA	TCGA-BH-A0HK	RHCG	SNP	Missense_Mutation	15	90020416	A	T	9	52
BRCA	TCGA-BH-A0HK	RNPS1	SNP	Silent	16	2313111	C	T	26	59
BRCA	TCGA-BH-A0HK	ITGAX	SNP	Missense_Mutation	16	31371302	G	A	38	44
BRCA	TCGA-BH-A0HK	TFAP4	SNP	Missense_Mutation	16	4310234	G	A	41	94
BRCA	TCGA-BH-A0HK	TEKT3	SNP	Silent	17	15234729	G	A	37	27
BRCA	TCGA-BH-A0HK	C17orf53	SNP	Splice_Site	17	42230004	G	C	33	72
BRCA	TCGA-BH-A0HK	PELP1	SNP	Silent	17	4594696	T	A	59	46
BRCA	TCGA-BH-A0HK	PDK2	SNP	Missense_Mutation	17	48174889	G	A	37	74
BRCA	TCGA-BH-A0HK	MC4R	SNP	Silent	18	58039364	C	T	32	84
BRCA	TCGA-BH-A0HK	OCEL1	SNP	Silent	19	17339695	C	T	31	41
BRCA	TCGA-BH-A0HK	RHPN2	SNP	Silent	19	33470935	G	A	45	66
BRCA	TCGA-BH-A0HK	EIF3K	SNP	Missense_Mutation	19	39110987	G	C	45	93
BRCA	TCGA-BH-A0HK	STAM2	SNP	Silent	2	152982824	C	T	29	69
BRCA	TCGA-BH-A0HK	FSIP2	SNP	Missense_Mutation	2	186671695	G	A	33	53
BRCA	TCGA-BH-A0HK	COL3A1	SNP	Nonsense_Mutation	2	189872623	C	T	29	85
BRCA	TCGA-BH-A0HK	ECEL1	SNP	Missense_Mutation	2	233347143	T	A	58	88
BRCA	TCGA-BH-A0HK	PPP1R21	SNP	Silent	2	48722823	C	T	32	46
BRCA	TCGA-BH-A0HK	TRABD2A	SNP	Missense_Mutation	2	85051114	G	A	39	50
BRCA	TCGA-BH-A0HK	SNX5	SNP	Splice_Site	20	17934762	C	A	32	100
BRCA	TCGA-BH-A0HK	DZANK1	SNP	Missense_Mutation	20	18374937	C	T	31	65
BRCA	TCGA-BH-A0HK	ZNFX1	SNP	Silent	20	47864113	C	T	29	52
BRCA	TCGA-BH-A0HK	EWSR1	SNP	Missense_Mutation	22	29693913	G	A	33	91
BRCA	TCGA-BH-A0HK	MYH9	DEL	In_Frame_Del	22	36689510	CTC	-	32	75
BRCA	TCGA-BH-A0HK	ATG4A	SNP	Missense_Mutation	23	107381041	G	A	48	69
BRCA	TCGA-BH-A0HK	IRS4	SNP	Missense_Mutation	23	107976114	C	G	30	71
BRCA	TCGA-BH-A0HK	KIAA1210	SNP	Missense_Mutation	23	118284464	G	A	45	53
BRCA	TCGA-BH-A0HK	GRPR	SNP	Missense_Mutation	23	16142101	C	G	32	50
BRCA	TCGA-BH-A0HK	BRWD3	SNP	Missense_Mutation	23	79980464	G	A	39	64
BRCA	TCGA-BH-A0HK	IQCB1	SNP	Missense_Mutation	3	121527844	C	G	32	65
BRCA	TCGA-BH-A0HK	ATP2C1	SNP	Silent	3	130714935	C	T	31	57
BRCA	TCGA-BH-A0HK	LOC256374	SNP	Missense_Mutation	3	138363214	C	T	30	56
BRCA	TCGA-BH-A0HK	HTR3E	SNP	Missense_Mutation	3	183823927	G	A	38	54
BRCA	TCGA-BH-A0HK	UBP1	SNP	Missense_Mutation	3	33434910	G	A	45	72
BRCA	TCGA-BH-A0HK	GNL3	SNP	Silent	3	52724624	G	A	33	53
BRCA	TCGA-BH-A0HK	FAT4	SNP	Nonsense_Mutation	4	126337775	C	G	29	65
BRCA	TCGA-BH-A0HK	LAP3	SNP	Silent	4	17585131	G	A	47	75
BRCA	TCGA-BH-A0HK	POLN	SNP	Missense_Mutation	4	2172878	G	A	45	77
BRCA	TCGA-BH-A0HK	ABLIM2	SNP	Silent	4	8098975	G	A	37	53
BRCA	TCGA-BH-A0HK	MYO10	SNP	Silent	5	16761623	C	T	32	63
BRCA	TCGA-BH-A0HK	SLIT3	SNP	Silent	5	168310287	G	A	45	54
BRCA	TCGA-BH-A0HK	ITGA1	SNP	Missense_Mutation	5	52216230	G	C	33	75
BRCA	TCGA-BH-A0HK	ANKRD32	SNP	Missense_Mutation	5	94030568	G	A	43	86
BRCA	TCGA-BH-A0HK	UTRN	SNP	Missense_Mutation	6	144784000	G	A	45	65
BRCA	TCGA-BH-A0HK	HIST1H3B	DEL	Frame_Shift_Del	6	26031883	CT	-	28	98
BRCA	TCGA-BH-A0HK	ZSCAN16	SNP	Missense_Mutation	6	28093465	G	A	33	78
BRCA	TCGA-BH-A0HK	GSTA1	SNP	Missense_Mutation	6	52661025	G	A	42	85
BRCA	TCGA-BH-A0HK	TINAG	SNP	Nonsense_Mutation	6	54173424	C	T	29	57
BRCA	TCGA-BH-A0HK	ORC3	SNP	Missense_Mutation	6	88313147	G	A	45	73
BRCA	TCGA-BH-A0HK	PRSS58	SNP	Missense_Mutation	7	141952311	C	T	30	73
BRCA	TCGA-BH-A0HK	VPS13B	SNP	Silent	8	100205158	C	G	29	52
BRCA	TCGA-BH-A0HK	UBR5	SNP	Missense_Mutation	8	103274157	C	T	32	100
BRCA	TCGA-BH-A0HK	HEATR7A	SNP	Missense_Mutation	8	145246717	G	A	38	50
BRCA	TCGA-BH-A0HK	ZBTB10	SNP	Missense_Mutation	8	81399907	C	T	30	62
BRCA	TCGA-BH-A0HK	ZFAND1	SNP	Missense_Mutation	8	82629498	G	A	45	96
BRCA	TCGA-BH-A0HK	TXN	SNP	Missense_Mutation	9	113006463	C	T	29	77
BRCA	TCGA-BH-A0HK	AQP7	SNP	Missense_Mutation	9	33386975	C	T	27	51
BRCA	TCGA-BH-A0HK	MAMDC2	SNP	Silent	9	72723278	G	A	45	54
BRCA	TCGA-BH-A0HL	VANGL1	SNP	Missense_Mutation	1	116226619	G	A	39	66
BRCA	TCGA-BH-A0HL	ABL2	SNP	Missense_Mutation	1	179078567	C	T	32	81
BRCA	TCGA-BH-A0HL	RAB3GAP2	SNP	Silent	1	220325077	G	C	41	48
BRCA	TCGA-BH-A0HL	GATA3	DEL	Frame_Shift_Del	10	8115948	CCACACCACCCCT	-	18	82
BRCA	TCGA-BH-A0HL	MLL	DEL	Frame_Shift_Del	11	118363887	AGCCTTTAGATCTAGAAGGAGTCAAG	-	7	61
BRCA	TCGA-BH-A0HL	MUC5B	DEL	Frame_Shift_Del	11	1269750	C	-	26	43
BRCA	TCGA-BH-A0HL	MTUS2	SNP	Missense_Mutation	13	29600570	C	T	19	51
BRCA	TCGA-BH-A0HL	IGHV3-30	SNP	Missense_Mutation	14	106791268	C	T	19	47
BRCA	TCGA-BH-A0HL	PELI2	SNP	Silent	14	56757012	C	T	23	43
BRCA	TCGA-BH-A0HL	CIRH1A	SNP	Missense_Mutation	16	69184739	C	T	31	80
BRCA	TCGA-BH-A0HL	RAI1	SNP	Nonsense_Mutation	17	17697697	C	T	21	71
BRCA	TCGA-BH-A0HL	IFI35	SNP	Splice_Site	17	41164295	G	A	44	75
BRCA	TCGA-BH-A0HL	AFG3L2	SNP	Missense_Mutation	18	12329635	C	T	24	98
BRCA	TCGA-BH-A0HL	NEDD4L	SNP	Silent	18	55990551	G	A	33	53
BRCA	TCGA-BH-A0HL	TMIGD2	DEL	Frame_Shift_Del	19	4292606	C	-	30	46
BRCA	TCGA-BH-A0HL	GYS1	SNP	Missense_Mutation	19	49472669	G	A	38	70
BRCA	TCGA-BH-A0HL	TTN	SNP	Missense_Mutation	2	179499272	C	T	31	85
BRCA	TCGA-BH-A0HL	IQCA1	SNP	Missense_Mutation	2	237308121	T	G	62	73
BRCA	TCGA-BH-A0HL	ITSN2	SNP	Missense_Mutation	2	24531572	G	A	45	65
BRCA	TCGA-BH-A0HL	SAMD10	SNP	Missense_Mutation	20	62607179	G	A	46	95
BRCA	TCGA-BH-A0HL	FAM47C	SNP	Missense_Mutation	23	37027222	C	T	23	45
BRCA	TCGA-BH-A0HL	PIM2	SNP	Missense_Mutation	23	48772372	G	A	40	53
BRCA	TCGA-BH-A0HL	ZCCHC5	SNP	Missense_Mutation	23	77913883	A	C	7	57
BRCA	TCGA-BH-A0HL	DNASE1L3	SNP	Missense_Mutation	3	58190568	C	T	29	79
BRCA	TCGA-BH-A0HL	CABS1	SNP	Silent	4	71200897	C	T	19	48
BRCA	TCGA-BH-A0HL	RICTOR	SNP	Silent	5	38952359	T	C	61	34
BRCA	TCGA-BH-A0HL	SOBP	SNP	Missense_Mutation	6	107955025	C	T	23	76
BRCA	TCGA-BH-A0HL	SPACA1	SNP	Missense_Mutation	6	88769255	G	T	41	81
BRCA	TCGA-BH-A0HL	WBSCR22	SNP	Missense_Mutation	7	73107983	C	T	31	65
BRCA	TCGA-BH-A0HL	GALNT12	SNP	Silent	9	101589095	C	T	27	35
BRCA	TCGA-BH-A0HL	COL5A1	SNP	Silent	9	137591855	G	A	34	70
BRCA	TCGA-BH-A0HN	GNB1	SNP	Missense_Mutation	1	1720602	A	G	12	90
BRCA	TCGA-BH-A0HN	COL16A1	SNP	Missense_Mutation	1	32124115	C	T	23	90
BRCA	TCGA-BH-A0HN	OPTN	SNP	Missense_Mutation	10	13166055	G	A	33	73
BRCA	TCGA-BH-A0HN	GRID1	SNP	Missense_Mutation	10	87362239	G	A	39	66
BRCA	TCGA-BH-A0HN	GLB1L3	SNP	Missense_Mutation	11	134147635	G	A	37	68
BRCA	TCGA-BH-A0HN	SLC39A13	SNP	Silent	11	47436878	C	T	31	47
BRCA	TCGA-BH-A0HN	CARNS1	DEL	In_Frame_Del	11	67187071	GGA	-	47	56
BRCA	TCGA-BH-A0HN	AMOTL1	SNP	Missense_Mutation	11	94554978	G	T	34	65
BRCA	TCGA-BH-A0HN	MRPL45	DEL	In_Frame_Del	17	36476574	GTTCAA	-	48	78
BRCA	TCGA-BH-A0HN	C17orf53	SNP	Silent	17	42225492	C	T	21	44
BRCA	TCGA-BH-A0HN	TIMM22	SNP	Missense_Mutation	17	900500	C	T	23	59
BRCA	TCGA-BH-A0HN	GIPC3	SNP	Nonsense_Mutation	19	3586586	C	T	27	60
BRCA	TCGA-BH-A0HN	TSKS	SNP	Missense_Mutation	19	50251415	G	A	33	66
BRCA	TCGA-BH-A0HN	ATP7A	SNP	Missense_Mutation	23	77268400	A	G	8	69
BRCA	TCGA-BH-A0HN	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-BH-A0HN	ANK2	SNP	Silent	4	114158316	C	T	19	50
BRCA	TCGA-BH-A0HN	SGCB	SNP	Missense_Mutation	4	52899712	C	A	30	98
BRCA	TCGA-BH-A0HN	BMP2K	SNP	Missense_Mutation	4	79780777	T	C	49	89
BRCA	TCGA-BH-A0HN	C4orf36	SNP	Missense_Mutation	4	87809322	G	C	34	63
BRCA	TCGA-BH-A0HN	LAMA2	DEL	Frame_Shift_Del	6	129813116	GTTAAAAAGCTTTT	-	36	73
BRCA	TCGA-BH-A0HN	MDN1	DEL	Frame_Shift_Del	6	90402199	T	-	58	64
BRCA	TCGA-BH-A0HN	NUP205	SNP	Missense_Mutation	7	135311088	G	A	38	80
BRCA	TCGA-BH-A0HN	OR6B1	DEL	Frame_Shift_Del	7	143701973	TCAAGGAAGC	-	58	85
BRCA	TCGA-BH-A0HN	MLL3	SNP	Missense_Mutation	7	151962208	G	A	45	98
BRCA	TCGA-BH-A0HN	C7orf57	SNP	Missense_Mutation	7	48086112	C	G	29	81
BRCA	TCGA-BH-A0HN	PXDNL	SNP	Silent	8	52361599	G	A	40	36
BRCA	TCGA-BH-A0HN	ABCA1	SNP	Missense_Mutation	9	107568529	G	A	35	100
BRCA	TCGA-BH-A0HN	SVEP1	SNP	Missense_Mutation	9	113169227	C	T	31	46
BRCA	TCGA-BH-A0HN	LPAR1	SNP	Silent	9	113637890	G	A	45	88
BRCA	TCGA-BH-A0HO	KPRP	SNP	Missense_Mutation	1	152732639	G	A	42	44
BRCA	TCGA-BH-A0HO	FOXD3	SNP	Silent	1	63789206	G	A	33	92
BRCA	TCGA-BH-A0HO	CHST11	SNP	Silent	12	105150939	C	T	23	38
BRCA	TCGA-BH-A0HO	NDN	SNP	Missense_Mutation	15	23931940	C	T	27	61
BRCA	TCGA-BH-A0HO	LINGO1	SNP	Missense_Mutation	15	77907821	C	T	28	86
BRCA	TCGA-BH-A0HO	SMCHD1	SNP	Missense_Mutation	18	2747542	G	T	33	56
BRCA	TCGA-BH-A0HO	FCGBP	SNP	Silent	19	40408747	C	T	25	58
BRCA	TCGA-BH-A0HO	TMC4	SNP	Missense_Mutation	19	54676772	G	A	41	57
BRCA	TCGA-BH-A0HO	BACH1	SNP	Nonsense_Mutation	21	30699316	C	T	27	65
BRCA	TCGA-BH-A0HO	ENTHD1	SNP	Nonsense_Mutation	22	40161426	C	A	30	66
BRCA	TCGA-BH-A0HO	FNDC3B	SNP	Missense_Mutation	3	171851264	A	G	16	83
BRCA	TCGA-BH-A0HO	DOCK2	SNP	Missense_Mutation	5	169127104	G	A	44	80
BRCA	TCGA-BH-A0HO	RAI14	SNP	Missense_Mutation	5	34812309	A	C	3	75
BRCA	TCGA-BH-A0HO	ITGA2	SNP	Missense_Mutation	5	52356790	C	T	31	64
BRCA	TCGA-BH-A0HO	POLD2	SNP	Silent	7	44156512	G	A	40	41
BRCA	TCGA-BH-A0HO	PLEC	SNP	Silent	8	145001190	G	A	47	55
BRCA	TCGA-BH-A0HO	ZBTB43	SNP	Silent	9	129595094	T	C	60	66
BRCA	TCGA-BH-A0HP	FRRS1	SNP	Missense_Mutation	1	100174482	G	A	45	46
BRCA	TCGA-BH-A0HP	VAV3	SNP	Missense_Mutation	1	108303488	C	G	32	98
BRCA	TCGA-BH-A0HP	PROK1	SNP	Silent	1	110998922	C	T	30	51
BRCA	TCGA-BH-A0HP	MTOR	SNP	Missense_Mutation	1	11174872	C	G	30	95
BRCA	TCGA-BH-A0HP	ADORA3	SNP	Silent	1	112043016	G	A	45	49
BRCA	TCGA-BH-A0HP	PRAMEF4	SNP	Silent	1	12939611	C	T	21	48
BRCA	TCGA-BH-A0HP	PRAMEF4	SNP	Missense_Mutation	1	12943161	G	T	35	60
BRCA	TCGA-BH-A0HP	PEX11B	SNP	Silent	1	145522859	C	T	31	28
BRCA	TCGA-BH-A0HP	CHD1L	SNP	Nonsense_Mutation	1	146759364	C	T	27	65
BRCA	TCGA-BH-A0HP	PSMB4	SNP	Missense_Mutation	1	151372187	C	G	30	64
BRCA	TCGA-BH-A0HP	RPTN	SNP	Missense_Mutation	1	152129019	C	G	29	62
BRCA	TCGA-BH-A0HP	ARHGAP30	SNP	Silent	1	161018228	G	A	33	53
BRCA	TCGA-BH-A0HP	SPEN	SNP	Nonsense_Mutation	1	16257914	C	T	21	68
BRCA	TCGA-BH-A0HP	RGS4	SNP	Missense_Mutation	1	163043290	G	A	45	94
BRCA	TCGA-BH-A0HP	NUF2	SNP	Missense_Mutation	1	163318851	G	A	35	57
BRCA	TCGA-BH-A0HP	HSPB7	SNP	Splice_site	1	16342076	C	T	29	71
BRCA	TCGA-BH-A0HP	FMO1	SNP	Silent	1	171251126	G	A	45	46
BRCA	TCGA-BH-A0HP	CACNA1E	SNP	Splice_site	1	181767970	G	A	33	67
BRCA	TCGA-BH-A0HP	HMCN1	SNP	Missense_Mutation	1	186014856	C	T	32	97
BRCA	TCGA-BH-A0HP	CFH	SNP	Missense_Mutation	1	196695948	C	T	32	78
BRCA	TCGA-BH-A0HP	CACNA1S	SNP	Silent	1	201030419	C	T	32	60
BRCA	TCGA-BH-A0HP	DSTYK	SNP	Missense_Mutation	1	205130512	C	T	30	100
BRCA	TCGA-BH-A0HP	SLC45A3	SNP	Missense_Mutation	1	205628672	C	T	20	56
BRCA	TCGA-BH-A0HP	EIF2D	SNP	Silent	1	206776375	G	C	33	34
BRCA	TCGA-BH-A0HP	SLC30A1	SNP	Missense_Mutation	1	211751624	G	T	46	71
BRCA	TCGA-BH-A0HP	USH2A	SNP	Missense_Mutation	1	216061968	G	C	33	60
BRCA	TCGA-BH-A0HP	SUSD4	SNP	Missense_Mutation	1	223402560	G	C	45	94
BRCA	TCGA-BH-A0HP	ENAH	SNP	Silent	1	225742783	G	A	37	48
BRCA	TCGA-BH-A0HP	OR2T27	SNP	Missense_Mutation	1	248813498	C	T	31	48
BRCA	TCGA-BH-A0HP	POU3F1	SNP	Missense_Mutation	1	38511359	C	A	27	91
BRCA	TCGA-BH-A0HP	KIAA0754	SNP	Missense_Mutation	1	39877483	G	C	33	81
BRCA	TCGA-BH-A0HP	KIAA0754	SNP	Missense_Mutation	1	39877816	G	C	33	59
BRCA	TCGA-BH-A0HP	RLF	SNP	Missense_Mutation	1	40705986	G	A	48	98
BRCA	TCGA-BH-A0HP	NFYC	SNP	Silent	1	41228646	G	A	33	63
BRCA	TCGA-BH-A0HP	PTPRF	SNP	Missense_Mutation	1	44079330	G	A	41	100
BRCA	TCGA-BH-A0HP	PTPRF	SNP	Missense_Mutation	1	44087660	C	A	21	100
BRCA	TCGA-BH-A0HP	PTCH2	SNP	Missense_Mutation	1	45295617	C	T	30	96
BRCA	TCGA-BH-A0HP	CYP4B1	SNP	Missense_Mutation	1	47283813	C	T	32	83
BRCA	TCGA-BH-A0HP	CHD5	SNP	Silent	1	6215763	C	T	23	41
BRCA	TCGA-BH-A0HP	ESPN	SNP	Missense_Mutation	1	6504709	C	A	21	87
BRCA	TCGA-BH-A0HP	AK4	SNP	Silent	1	65656505	C	T	30	29
BRCA	TCGA-BH-A0HP	DNAJC6	SNP	Splice_site	1	65878608	C	G	28	99
BRCA	TCGA-BH-A0HP	DNAJC11	SNP	Missense_Mutation	1	6727831	C	G	30	83
BRCA	TCGA-BH-A0HP	ZNHIT6	SNP	Missense_Mutation	1	86144457	C	A	32	84
BRCA	TCGA-BH-A0HP	CLSTN1	SNP	Missense_Mutation	1	9794165	C	T	31	73
BRCA	TCGA-BH-A0HP	LZIC	SNP	Missense_Mutation	1	9995660	C	T	29	100
BRCA	TCGA-BH-A0HP	CNNM2	SNP	Silent	10	104836880	G	A	33	74
BRCA	TCGA-BH-A0HP	TTC40	SNP	Missense_Mutation	10	134751139	C	T	30	68
BRCA	TCGA-BH-A0HP	FRMD4A	SNP	Missense_Mutation	10	13838563	C	A	32	88
BRCA	TCGA-BH-A0HP	KIF5B	SNP	Missense_Mutation	10	32344886	C	T	31	99
BRCA	TCGA-BH-A0HP	AKR1C1	SNP	Missense_Mutation	10	5014915	G	A	45	53
BRCA	TCGA-BH-A0HP	A1CF	SNP	Missense_Mutation	10	52595854	G	A	38	75
BRCA	TCGA-BH-A0HP	ZWINT	SNP	Missense_Mutation	10	58120134	C	T	29	46
BRCA	TCGA-BH-A0HP	ANK3	SNP	Missense_Mutation	10	61815778	C	G	32	95
BRCA	TCGA-BH-A0HP	ANK3	SNP	Missense_Mutation	10	61832745	C	G	29	89
BRCA	TCGA-BH-A0HP	DDX21	SNP	Silent	10	70719576	G	A	33	56
BRCA	TCGA-BH-A0HP	GATA3	SNP	Missense_Mutation	10	8106058	T	A	51	92
BRCA	TCGA-BH-A0HP	PTEN	SNP	Splice_Site	10	89712018	T	C	57	90
BRCA	TCGA-BH-A0HP	IDE	SNP	Missense_Mutation	10	94230067	G	C	45	98
BRCA	TCGA-BH-A0HP	CYP2C18	SNP	Nonsense_Mutation	10	96447986	C	T	29	53
BRCA	TCGA-BH-A0HP	TCTN3	SNP	Silent	10	97424016	C	T	29	67
BRCA	TCGA-BH-A0HP	OPALIN	SNP	Missense_Mutation	10	98108092	C	T	32	51
BRCA	TCGA-BH-A0HP	TLL2	SNP	Missense_Mutation	10	98205902	C	G	29	75
BRCA	TCGA-BH-A0HP	USP28	SNP	Nonsense_Mutation	11	113723334	G	A	45	78
BRCA	TCGA-BH-A0HP	SIK3	SNP	Splice_Site	11	116798097	C	A	32	97
BRCA	TCGA-BH-A0HP	CDON	SNP	Missense_Mutation	11	125871671	C	G	32	87
BRCA	TCGA-BH-A0HP	ARHGAP32	SNP	Missense_Mutation	11	128844843	G	C	33	84
BRCA	TCGA-BH-A0HP	CSTF3	SNP	Missense_Mutation	11	33107491	G	A	41	95
BRCA	TCGA-BH-A0HP	CREB3L1	SNP	Missense_Mutation	11	46334219	G	C	33	57
BRCA	TCGA-BH-A0HP	OR51D1	SNP	Silent	11	4661785	C	T	32	51
BRCA	TCGA-BH-A0HP	PACSIN3	DNP	Missense_Mutation	11	47201107	CT	TG	32	100
BRCA	TCGA-BH-A0HP	TRIM51	SNP	Nonsense_Mutation	11	55653691	G	A	41	51
BRCA	TCGA-BH-A0HP	OR52N4	SNP	Missense_Mutation	11	5776902	C	T	29	50
BRCA	TCGA-BH-A0HP	PLAC1L	SNP	Silent	11	59810970	G	A	45	67
BRCA	TCGA-BH-A0HP	PCNXL3	SNP	Nonsense_Mutation	11	65403698	C	G	29	80
BRCA	TCGA-BH-A0HP	UTP20	SNP	Missense_Mutation	12	101776918	G	A	33	60
BRCA	TCGA-BH-A0HP	FBXO21	SNP	Missense_Mutation	12	117583909	C	T	32	69
BRCA	TCGA-BH-A0HP	HCAR1	SNP	Silent	12	123214164	G	A	33	45
BRCA	TCGA-BH-A0HP	SCARB1	SNP	Nonsense_Mutation	12	125292447	G	T	45	61
BRCA	TCGA-BH-A0HP	TMEM132D	SNP	Silent	12	129558669	G	A	45	51
BRCA	TCGA-BH-A0HP	TMEM132D	SNP	Silent	12	130015639	G	A	37	49
BRCA	TCGA-BH-A0HP	ANKLE2	SNP	Missense_Mutation	12	133306539	C	G	29	66
BRCA	TCGA-BH-A0HP	C12orf32	SNP	Silent	12	2997577	C	T	29	55
BRCA	TCGA-BH-A0HP	DDX11	SNP	Missense_Mutation	12	31249282	G	A	37	57
BRCA	TCGA-BH-A0HP	LIMA1	SNP	Missense_Mutation	12	50616256	G	C	33	62
BRCA	TCGA-BH-A0HP	MON2	SNP	Missense_Mutation	12	62954645	G	C	45	100
BRCA	TCGA-BH-A0HP	XPOT	SNP	Missense_Mutation	12	64814203	G	C	45	100
BRCA	TCGA-BH-A0HP	LAG3	SNP	Missense_Mutation	12	6886451	C	T	29	45
BRCA	TCGA-BH-A0HP	MGAT4C	SNP	Missense_Mutation	12	86383282	C	G	29	83
BRCA	TCGA-BH-A0HP	ATP2B1	SNP	Silent	12	90005123	C	T	32	100
BRCA	TCGA-BH-A0HP	A2ML1	SNP	Missense_Mutation	12	9001389	C	G	32	56
BRCA	TCGA-BH-A0HP	APAF1	SNP	Missense_Mutation	12	99042512	C	T	32	65
BRCA	TCGA-BH-A0HP	NEK5	SNP	Nonsense_Mutation	13	52663415	G	A	45	80
BRCA	TCGA-BH-A0HP	SLAIN1	SNP	Missense_Mutation	13	78327410	C	T	32	95
BRCA	TCGA-BH-A0HP	AHNAK2	SNP	Silent	14	105409680	G	A	41	38
BRCA	TCGA-BH-A0HP	AHNAK2	SNP	Silent	14	105414690	G	T	45	45
BRCA	TCGA-BH-A0HP	CDCA4	SNP	Missense_Mutation	14	105478091	G	A	45	73
BRCA	TCGA-BH-A0HP	BTBD6	SNP	Silent	14	105716550	C	T	31	33
BRCA	TCGA-BH-A0HP	EDDM3A	SNP	Missense_Mutation	14	21216085	G	A	33	55
BRCA	TCGA-BH-A0HP	PSMC6	SNP	Silent	14	53177881	C	T	29	52
BRCA	TCGA-BH-A0HP	EXOC5	SNP	Silent	14	57696455	A	G	16	65
BRCA	TCGA-BH-A0HP	STON2	SNP	Missense_Mutation	14	81737194	G	T	33	70
BRCA	TCGA-BH-A0HP	C14orf142	SNP	Silent	14	93673338	C	T	32	68
BRCA	TCGA-BH-A0HP	MGA	SNP	Missense_Mutation	15	42052536	C	G	32	43
BRCA	TCGA-BH-A0HP	MAP1A	SNP	Missense_Mutation	15	43820850	G	T	42	78
BRCA	TCGA-BH-A0HP	CATSPER2	SNP	Silent	15	43940233	C	T	32	47
BRCA	TCGA-BH-A0HP	ITGA11	SNP	Silent	15	68600011	G	A	33	47
BRCA	TCGA-BH-A0HP	SHISA9	SNP	Missense_Mutation	16	13010601	G	A	33	81
BRCA	TCGA-BH-A0HP	FOPNL	SNP	Missense_Mutation	16	15973705	G	C	45	57
BRCA	TCGA-BH-A0HP	DNAH3	SNP	Missense_Mutation	16	20975814	C	G	30	100
BRCA	TCGA-BH-A0HP	ERN2	SNP	Silent	16	23702689	C	T	30	94
BRCA	TCGA-BH-A0HP	HS3ST4	SNP	Silent	16	26147248	C	T	22	47
BRCA	TCGA-BH-A0HP	KIF22	SNP	Missense_Mutation	16	29814143	G	A	34	50
BRCA	TCGA-BH-A0HP	SRL	SNP	Missense_Mutation	16	4247856	G	T	33	100
BRCA	TCGA-BH-A0HP	PPL	SNP	Silent	16	4935302	G	C	45	51
BRCA	TCGA-BH-A0HP	CDH1	SNP	Splice_Site	16	68844099	G	A	34	94
BRCA	TCGA-BH-A0HP	WWP2	SNP	Silent	16	69973789	G	C	45	57
BRCA	TCGA-BH-A0HP	ZFHX3	SNP	Silent	16	72830257	C	T	32	57
BRCA	TCGA-BH-A0HP	CENPN	SNP	Missense_Mutation	16	81062223	G	C	33	55
BRCA	TCGA-BH-A0HP	FAM38A	SNP	Missense_Mutation	16	88783032	C	G	32	62
BRCA	TCGA-BH-A0HP	FANCA	SNP	Missense_Mutation	16	89831324	C	G	32	64
BRCA	TCGA-BH-A0HP	FANCA	SNP	Silent	16	89831364	C	T	32	52
BRCA	TCGA-BH-A0HP	NCOR1	SNP	Missense_Mutation	17	16068438	G	A	33	95
BRCA	TCGA-BH-A0HP	MMP28	SNP	Missense_Mutation	17	34105959	C	G	32	68
BRCA	TCGA-BH-A0HP	ARHGAP23	SNP	Silent	17	36623403	G	A	33	69
BRCA	TCGA-BH-A0HP	TUBD1	SNP	Missense_Mutation	17	57968254	C	G	32	51
BRCA	TCGA-BH-A0HP	SCN4A	SNP	Missense_Mutation	17	62041972	G	C	33	67
BRCA	TCGA-BH-A0HP	ARMC7	SNP	Missense_Mutation	17	73106677	G	A	45	100
BRCA	TCGA-BH-A0HP	CABYR	SNP	Splice_Site	18	21741479	G	C	33	76
BRCA	TCGA-BH-A0HP	NEDD4L	SNP	Missense_Mutation	18	55916155	G	C	33	92
BRCA	TCGA-BH-A0HP	OR7A17	SNP	Silent	19	14992033	G	A	45	58
BRCA	TCGA-BH-A0HP	RASAL3	SNP	Missense_Mutation	19	15575074	C	A	32	53
BRCA	TCGA-BH-A0HP	GLT25D1	SNP	Missense_Mutation	19	17690311	G	C	33	63
BRCA	TCGA-BH-A0HP	TSHZ3	SNP	Silent	19	31768347	G	C	45	53
BRCA	TCGA-BH-A0HP	LTBP4	SNP	Missense_Mutation	19	41114263	C	G	31	48
BRCA	TCGA-BH-A0HP	ZNF283	SNP	Nonsense_Mutation	19	44351927	C	T	31	49
BRCA	TCGA-BH-A0HP	EML2	SNP	Missense_Mutation	19	46116900	C	G	29	75
BRCA	TCGA-BH-A0HP	ZNF83	SNP	Missense_Mutation	19	53116808	C	T	32	52
BRCA	TCGA-BH-A0HP	ZNF28	SNP	Missense_Mutation	19	53303801	G	A	45	72
BRCA	TCGA-BH-A0HP	LILRB5	SNP	Silent	19	54756786	G	T	41	47
BRCA	TCGA-BH-A0HP	PTPRH	SNP	Nonsense_Mutation	19	55715306	G	A	45	51
BRCA	TCGA-BH-A0HP	EVI5L	SNP	Silent	19	7918195	G	A	33	51
BRCA	TCGA-BH-A0HP	MED16	SNP	Missense_Mutation	19	880067	G	C	41	78
BRCA	TCGA-BH-A0HP	AFF3	SNP	Missense_Mutation	2	100625289	G	T	45	67
BRCA	TCGA-BH-A0HP	BUB1	SNP	Missense_Mutation	2	111398712	C	G	32	99
BRCA	TCGA-BH-A0HP	NEB	SNP	Missense_Mutation	2	152404198	C	T	31	88
BRCA	TCGA-BH-A0HP	UPP2	SNP	Silent	2	158991285	C	G	31	36
BRCA	TCGA-BH-A0HP	METTL8	SNP	Missense_Mutation	2	172196014	G	C	45	98
BRCA	TCGA-BH-A0HP	TTN	SNP	Missense_Mutation	2	179497091	C	G	32	52
BRCA	TCGA-BH-A0HP	ZNF385B	SNP	Nonsense_Mutation	2	180634302	G	A	40	63
BRCA	TCGA-BH-A0HP	MFSD6	SNP	Silent	2	191301691	C	T	29	36
BRCA	TCGA-BH-A0HP	SF3B1	SNP	Missense_Mutation	2	198267361	T	C	61	92
BRCA	TCGA-BH-A0HP	FAM126B	SNP	Silent	2	201887608	C	G	30	58
BRCA	TCGA-BH-A0HP	NOP58	SNP	Missense_Mutation	2	203139857	C	G	29	95
BRCA	TCGA-BH-A0HP	MAP2	SNP	Missense_Mutation	2	210557864	C	G	32	63
BRCA	TCGA-BH-A0HP	ERBB4	SNP	Silent	2	212285277	C	T	21	61
BRCA	TCGA-BH-A0HP	DNPEP	SNP	Missense_Mutation	2	220251466	G	T	34	98
BRCA	TCGA-BH-A0HP	SPEG	SNP	Missense_Mutation	2	220338317	C	G	29	56
BRCA	TCGA-BH-A0HP	TRIP12	DEL	Splice_Site	2	230678948	C	-	18	100
BRCA	TCGA-BH-A0HP	TRPM8	SNP	Missense_Mutation	2	234878931	C	T	30	80
BRCA	TCGA-BH-A0HP	ATAD2B	SNP	Missense_Mutation	2	24011418	G	C	45	81
BRCA	TCGA-BH-A0HP	PRR21	SNP	Missense_Mutation	2	240982327	G	C	45	57
BRCA	TCGA-BH-A0HP	KIF3C	SNP	Silent	2	26203692	G	T	45	53
BRCA	TCGA-BH-A0HP	HAAO	SNP	Silent	2	42997320	G	A	45	64
BRCA	TCGA-BH-A0HP	SPTBN1	SNP	Missense_Mutation	2	54891600	C	T	19	59
BRCA	TCGA-BH-A0HP	XPO1	SNP	Missense_Mutation	2	61708356	G	C	45	72
BRCA	TCGA-BH-A0HP	ZNF638	SNP	Missense_Mutation	2	71576606	G	C	45	54
BRCA	TCGA-BH-A0HP	C2orf89	SNP	Missense_Mutation	2	85051283	G	C	33	70
BRCA	TCGA-BH-A0HP	INPP4A	SNP	Missense_Mutation	2	99203969	G	C	33	85
BRCA	TCGA-BH-A0HP	TTLL9	SNP	Splice_Site	20	30486275	G	A	33	77
BRCA	TCGA-BH-A0HP	EIF2S2	SNP	Missense_Mutation	20	32685285	G	C	33	56
BRCA	TCGA-BH-A0HP	C20orf111	SNP	Missense_Mutation	20	42835595	C	G	29	94
BRCA	TCGA-BH-A0HP	SLC13A3	SNP	Missense_Mutation	20	45188729	C	T	29	44
BRCA	TCGA-BH-A0HP	PREX1	DEL	Frame_Shift_Del	20	47267491	G	-	39	65
BRCA	TCGA-BH-A0HP	ADNP	SNP	Missense_Mutation	20	49508007	C	T	29	83
BRCA	TCGA-BH-A0HP	ADNP	SNP	Missense_Mutation	20	49508164	C	G	32	76
BRCA	TCGA-BH-A0HP	ADNP	SNP	Missense_Mutation	20	49508270	C	G	30	66
BRCA	TCGA-BH-A0HP	ADNP	SNP	Missense_Mutation	20	49508298	C	G	29	88
BRCA	TCGA-BH-A0HP	ADNP	SNP	Missense_Mutation	20	49508391	C	G	29	96
BRCA	TCGA-BH-A0HP	ADNP	SNP	Missense_Mutation	20	49508687	C	G	32	77
BRCA	TCGA-BH-A0HP	TSHZ2	SNP	Missense_Mutation	20	51872856	G	A	45	84
BRCA	TCGA-BH-A0HP	TRMT6	SNP	Silent	20	5921753	C	T	32	54
BRCA	TCGA-BH-A0HP	RUNX1	INS	Frame_Shift_Ins	21	36252856	-	T	32	100
BRCA	TCGA-BH-A0HP	DYRK1A	SNP	Missense_Mutation	21	38845021	C	T	31	100
BRCA	TCGA-BH-A0HP	DYRK1A	SNP	Missense_Mutation	21	38853104	G	C	45	50
BRCA	TCGA-BH-A0HP	C22orf28	SNP	Missense_Mutation	22	32788229	C	G	32	100
BRCA	TCGA-BH-A0HP	LARGE	SNP	Missense_Mutation	22	33960864	C	G	32	100
BRCA	TCGA-BH-A0HP	CSF2RB	SNP	Missense_Mutation	22	37334464	C	A	29	74
BRCA	TCGA-BH-A0HP	SREBF2	SNP	Missense_Mutation	22	42293122	G	A	45	61
BRCA	TCGA-BH-A0HP	RRP7A	SNP	Missense_Mutation	22	42912034	G	A	45	49
BRCA	TCGA-BH-A0HP	ACR	SNP	Missense_Mutation	22	51183213	C	G	32	57
BRCA	TCGA-BH-A0HP	ARMCX2	SNP	Missense_Mutation	23	100910882	C	G	32	69
BRCA	TCGA-BH-A0HP	ARMCX2	SNP	Missense_Mutation	23	100910946	C	A	32	52
BRCA	TCGA-BH-A0HP	ARMCX2	SNP	Missense_Mutation	23	100910996	C	T	29	69
BRCA	TCGA-BH-A0HP	ARMCX2	SNP	Silent	23	100911132	C	T	29	54
BRCA	TCGA-BH-A0HP	ARMCX2	SNP	Missense_Mutation	23	100911530	C	G	32	72
BRCA	TCGA-BH-A0HP	LONRF3	SNP	Missense_Mutation	23	118108919	C	T	32	58
BRCA	TCGA-BH-A0HP	RENBP	DEL	Frame_Shift_Del	23	153206997	G	-	39	38
BRCA	TCGA-BH-A0HP	BRCC3	SNP	Silent	23	154327650	G	A	33	57
BRCA	TCGA-BH-A0HP	PHKA2	SNP	Silent	23	18936866	G	A	45	68
BRCA	TCGA-BH-A0HP	PQBP1	SNP	Missense_Mutation	23	48759632	G	A	45	83
BRCA	TCGA-BH-A0HP	CCNB3	SNP	Missense_Mutation	23	50052923	C	T	31	58
BRCA	TCGA-BH-A0HP	WNK3	SNP	Missense_Mutation	23	54319370	G	A	45	57
BRCA	TCGA-BH-A0HP	GDPD2	SNP	Nonsense_Mutation	23	69652507	C	T	21	65
BRCA	TCGA-BH-A0HP	TAF1	SNP	Missense_Mutation	23	70607298	G	A	37	93
BRCA	TCGA-BH-A0HP	PCDH19	SNP	Missense_Mutation	23	99662072	G	C	45	63
BRCA	TCGA-BH-A0HP	C3orf36	SNP	Missense_Mutation	3	133647431	C	T	29	54
BRCA	TCGA-BH-A0HP	TFDP2	SNP	Splice_Site	3	141671859	C	G	32	72
BRCA	TCGA-BH-A0HP	C3orf33	SNP	Missense_Mutation	3	155493550	C	G	29	71
BRCA	TCGA-BH-A0HP	KPNA4	SNP	Missense_Mutation	3	160225904	C	G	32	96
BRCA	TCGA-BH-A0HP	YEATS2	SNP	Missense_Mutation	3	183432996	G	A	37	92
BRCA	TCGA-BH-A0HP	RTP4	SNP	Silent	3	187088789	G	A	45	54
BRCA	TCGA-BH-A0HP	KAT2B	SNP	Silent	3	20161094	C	A	29	76
BRCA	TCGA-BH-A0HP	GLB1	SNP	Missense_Mutation	3	33059951	C	G	25	48
BRCA	TCGA-BH-A0HP	GOLGA4	SNP	Missense_Mutation	3	37369998	G	A	33	96
BRCA	TCGA-BH-A0HP	CTDSPL	SNP	Missense_Mutation	3	38006086	G	A	33	98
BRCA	TCGA-BH-A0HP	SCN11A	SNP	Missense_Mutation	3	38968358	G	C	33	55
BRCA	TCGA-BH-A0HP	SMARCC1	SNP	Missense_Mutation	3	47680259	C	G	32	69
BRCA	TCGA-BH-A0HP	STAB1	SNP	Silent	3	52547786	C	T	19	41
BRCA	TCGA-BH-A0HP	TMEM155	SNP	Silent	4	122682808	G	A	33	65
BRCA	TCGA-BH-A0HP	PROM1	SNP	Missense_Mutation	4	16010727	G	C	45	56
BRCA	TCGA-BH-A0HP	STOX2	SNP	Silent	4	184932148	G	C	37	3
BRCA	TCGA-BH-A0HP	KIAA1239	SNP	Missense_Mutation	4	37445636	G	A	41	99
BRCA	TCGA-BH-A0HP	CHRNA9	SNP	Silent	4	40351124	C	T	29	65
BRCA	TCGA-BH-A0HP	BMP2K	SNP	Missense_Mutation	4	79831828	C	G	29	49
BRCA	TCGA-BH-A0HP	WDFY3	SNP	Missense_Mutation	4	85638146	C	G	32	75
BRCA	TCGA-BH-A0HP	AFF1	SNP	Missense_Mutation	4	87968288	C	T	30	54
BRCA	TCGA-BH-A0HP	DSPP	SNP	Missense_Mutation	4	88537602	C	T	32	61
BRCA	TCGA-BH-A0HP	HERC5	SNP	Missense_Mutation	4	89388340	G	A	45	78
BRCA	TCGA-BH-A0HP	DMXL1	SNP	Missense_Mutation	5	118468832	G	A	45	92
BRCA	TCGA-BH-A0HP	KDM3B	SNP	Missense_Mutation	5	137721882	G	A	45	94
BRCA	TCGA-BH-A0HP	PCDHA5	SNP	Silent	5	140202458	G	A	39	21
BRCA	TCGA-BH-A0HP	TNIP1	SNP	Missense_Mutation	5	150439923	C	T	29	79
BRCA	TCGA-BH-A0HP	ITK	SNP	Missense_Mutation	5	156672782	C	T	32	100
BRCA	TCGA-BH-A0HP	C1QTNF2	SNP	Missense_Mutation	5	159776212	A	T	15	90
BRCA	TCGA-BH-A0HP	SH3PXD2B	SNP	Silent	5	171777551	C	T	32	60
BRCA	TCGA-BH-A0HP	SNCB	SNP	Missense_Mutation	5	176048277	C	T	29	91
BRCA	TCGA-BH-A0HP	DROSHA	SNP	Missense_Mutation	5	31401613	C	G	32	99
BRCA	TCGA-BH-A0HP	LIFR	SNP	Missense_Mutation	5	38493737	G	A	45	73
BRCA	TCGA-BH-A0HP	OXCT1	SNP	Missense_Mutation	5	41731843	C	G	32	58
BRCA	TCGA-BH-A0HP	SREK1	SNP	Silent	5	65474672	C	T	32	50
BRCA	TCGA-BH-A0HP	SLC30A5	SNP	Silent	5	68419174	G	A	45	56
BRCA	TCGA-BH-A0HP	GRIK2	SNP	Missense_Mutation	6	102124653	G	A	45	87
BRCA	TCGA-BH-A0HP	SLC22A16	SNP	Missense_Mutation	6	110763662	G	A	45	58
BRCA	TCGA-BH-A0HP	TAAR9	SNP	Nonsense_Mutation	6	132859522	C	T	31	67
BRCA	TCGA-BH-A0HP	MDC1	SNP	Nonsense_Mutation	6	30671702	G	C	45	49
BRCA	TCGA-BH-A0HP	RIPK1	SNP	Missense_Mutation	6	3085612	G	T	34	53
BRCA	TCGA-BH-A0HP	TAP1	SNP	Missense_Mutation	6	32816574	G	T	41	77
BRCA	TCGA-BH-A0HP	POLH	SNP	Missense_Mutation	6	43550143	G	C	45	63
BRCA	TCGA-BH-A0HP	PHIP	SNP	Missense_Mutation	6	79672892	C	T	29	83
BRCA	TCGA-BH-A0HP	MUC12	SNP	Missense_Mutation	7	100635483	C	A	29	47
BRCA	TCGA-BH-A0HP	CDHR3	SNP	Silent	7	105662855	C	T	29	55
BRCA	TCGA-BH-A0HP	THSD7A	SNP	Missense_Mutation	7	11676040	C	T	31	73
BRCA	TCGA-BH-A0HP	TTC26	SNP	Missense_Mutation	7	138865859	G	C	33	66
BRCA	TCGA-BH-A0HP	CNPY1	SNP	Missense_Mutation	7	155301698	G	A	40	73
BRCA	TCGA-BH-A0HP	HNRNPA2B1	SNP	Missense_Mutation	7	26237271	C	G	31	80
BRCA	TCGA-BH-A0HP	ABCA13	SNP	Missense_Mutation	7	48427518	C	T	32	84
BRCA	TCGA-BH-A0HP	ZNF736	SNP	Missense_Mutation	7	63797334	G	A	33	45
BRCA	TCGA-BH-A0HP	MAGI2	SNP	Silent	7	77789382	G	A	45	73
BRCA	TCGA-BH-A0HP	KRIT1	SNP	Silent	7	91842614	G	A	45	68
BRCA	TCGA-BH-A0HP	AP4M1	SNP	Silent	7	99701112	C	T	29	75
BRCA	TCGA-BH-A0HP	LRP12	SNP	Silent	8	105503585	C	T	32	63
BRCA	TCGA-BH-A0HP	ENPP2	SNP	Silent	8	120598503	G	C	47	61
BRCA	TCGA-BH-A0HP	ZHX1	SNP	Nonsense_Mutation	8	124266322	G	C	45	84
BRCA	TCGA-BH-A0HP	LRRC6	SNP	Missense_Mutation	8	133637540	G	C	40	54
BRCA	TCGA-BH-A0HP	FAM160B2	SNP	Splice_site	8	21957402	G	A	45	97
BRCA	TCGA-BH-A0HP	RGS20	SNP	Silent	8	54852243	C	T	19	38
BRCA	TCGA-BH-A0HP	TCEA1	SNP	Missense_Mutation	8	54897032	C	G	32	100
BRCA	TCGA-BH-A0HP	ZBTB10	SNP	Missense_Mutation	8	81412521	C	G	30	95
BRCA	TCGA-BH-A0HP	ORM2	SNP	Missense_Mutation	9	117092822	G	C	33	50
BRCA	TCGA-BH-A0HP	OR1L4	SNP	Silent	9	125487177	G	A	33	51
BRCA	TCGA-BH-A0HP	ADAMTS13	SNP	Silent	9	136289592	C	G	29	58
BRCA	TCGA-BH-A0HP	FAM166A	DEL	Frame_Shift_Del	9	140140154	G	-	47	47
BRCA	TCGA-BH-A0HP	KIAA1432	SNP	Silent	9	5762597	G	A	33	68
BRCA	TCGA-BH-A0HP	SMC5	SNP	Silent	9	72913049	G	C	45	57
BRCA	TCGA-BH-A0HQ	ENSG00000234905	SNP	Missense_Mutation	1	149286469	C	G	22	53
BRCA	TCGA-BH-A0HQ	KIF21B	SNP	Missense_Mutation	1	200958025	C	T	23	84
BRCA	TCGA-BH-A0HQ	SNRNP40	SNP	Silent	1	31769548	G	A	45	51
BRCA	TCGA-BH-A0HQ	VCL	SNP	Missense_Mutation	10	75843202	G	T	38	97
BRCA	TCGA-BH-A0HQ	TBX3	SNP	Missense_Mutation	12	115118782	G	A	45	100
BRCA	TCGA-BH-A0HQ	NYNRIN	SNP	Silent	14	24884006	C	T	19	9
BRCA	TCGA-BH-A0HQ	SFTA3	SNP	Silent	14	36946266	G	A	37	51
BRCA	TCGA-BH-A0HQ	RDH11	SNP	Missense_Mutation	14	68157923	C	T	20	89
BRCA	TCGA-BH-A0HQ	ADPGK	SNP	Missense_Mutation	15	73048722	T	C	60	92
BRCA	TCGA-BH-A0HQ	SHCBP1	SNP	Missense_Mutation	16	46617506	T	G	61	81
BRCA	TCGA-BH-A0HQ	CDH3	SNP	Silent	16	68714903	C	T	21	42
BRCA	TCGA-BH-A0HQ	ZFHX3	SNP	Nonsense_Mutation	16	72830109	G	A	39	61
BRCA	TCGA-BH-A0HQ	HECW2	SNP	Missense_Mutation	2	197081794	T	C	52	91
BRCA	TCGA-BH-A0HQ	TMEM150A	SNP	Missense_Mutation	2	85826426	C	T	17	49
BRCA	TCGA-BH-A0HQ	FER1L5	SNP	Missense_Mutation	2	97312826	G	A	38	43
BRCA	TCGA-BH-A0HQ	SYNDIG1	SNP	Missense_Mutation	20	24524055	G	A	38	41
BRCA	TCGA-BH-A0HQ	RUNX1	INS	Splice_Site	21	36259138	-	C	14	75
BRCA	TCGA-BH-A0HQ	PIWIL3	SNP	Missense_Mutation	22	25158460	C	T	21	64
BRCA	TCGA-BH-A0HQ	UPF3B	SNP	Missense_Mutation	23	118971905	G	A	38	64
BRCA	TCGA-BH-A0HQ	MXRA5	SNP	Missense_Mutation	23	3238811	G	A	44	51
BRCA	TCGA-BH-A0HQ	IQCG	SNP	Silent	3	197670853	G	A	38	26
BRCA	TCGA-BH-A0HQ	KIAA0922	SNP	Missense_Mutation	4	154556719	C	T	32	60
BRCA	TCGA-BH-A0HQ	MYB	INS	Frame_Shift_Ins	6	135511376	-	CA	30	100
BRCA	TCGA-BH-A0HQ	HIST1H3G	SNP	Silent	6	26271388	G	A	37	82
BRCA	TCGA-BH-A0HQ	COL11A2	SNP	Silent	6	33147259	C	T	27	19
BRCA	TCGA-BH-A0HQ	MLL3	DEL	Frame_Shift_Del	7	151859396	C	-	28	59
BRCA	TCGA-BH-A0HQ	CTSB	SNP	Missense_Mutation	8	11703257	C	T	25	99
BRCA	TCGA-BH-A0HQ	TRIM14	SNP	Nonsense_Mutation	9	100862246	G	A	45	47
BRCA	TCGA-BH-A0HQ	AQP7	DEL	Frame_Shift_Del	9	33387044	T	-	49	48
BRCA	TCGA-BH-A0HU	OR6P1	SNP	Silent	1	158532693	G	C	42	48
BRCA	TCGA-BH-A0HU	FMN2	SNP	Missense_Mutation	1	240371704	C	A	30	80
BRCA	TCGA-BH-A0HU	INSL5	SNP	Missense_Mutation	1	67266829	C	A	17	49
BRCA	TCGA-BH-A0HU	MUC2	SNP	Missense_Mutation	11	1090919	A	C	6	51
BRCA	TCGA-BH-A0HU	PIWIL1	SNP	Missense_Mutation	12	130827144	G	A	43	91
BRCA	TCGA-BH-A0HU	TMEM30B	DEL	Frame_Shift_Del	14	61746982	GCGCGCA	-	38	64
BRCA	TCGA-BH-A0HU	TMEM30B	DEL	Frame_Shift_Del	14	61746991	GGGTAGTTGTA	-	39	93
BRCA	TCGA-BH-A0HU	SERPINA1	SNP	Splice_Site	14	94845800	C	T	18	87
BRCA	TCGA-BH-A0HU	GOLGA6L1	SNP	Missense_Mutation	15	22742829	T	G	49	51
BRCA	TCGA-BH-A0HU	AKAP13	SNP	Silent	15	86123003	G	A	39	0
BRCA	TCGA-BH-A0HU	MYH8	SNP	Missense_Mutation	17	10303934	G	A	38	61
BRCA	TCGA-BH-A0HU	SPATA22	SNP	Missense_Mutation	17	3346557	C	A	29	71
BRCA	TCGA-BH-A0HU	CAMTA2	SNP	Silent	17	4876086	T	G	59	50
BRCA	TCGA-BH-A0HU	ZNF443	SNP	Missense_Mutation	19	12541421	T	C	51	78
BRCA	TCGA-BH-A0HU	ZNF420	SNP	Missense_Mutation	19	37619086	A	G	3	73
BRCA	TCGA-BH-A0HU	ZNF606	SNP	Missense_Mutation	19	58489891	C	G	32	53
BRCA	TCGA-BH-A0HU	ZNF324	SNP	Silent	19	58983206	C	T	27	25
BRCA	TCGA-BH-A0HU	RIF1	SNP	Missense_Mutation	2	152320145	A	T	13	59
BRCA	TCGA-BH-A0HU	ABCB11	SNP	Missense_Mutation	2	169842673	C	T	23	88
BRCA	TCGA-BH-A0HU	CHRNA1	SNP	Missense_Mutation	2	175624061	G	T	48	100
BRCA	TCGA-BH-A0HU	ASIC4	SNP	Silent	2	220402756	T	C	52	70
BRCA	TCGA-BH-A0HU	EIF5B	SNP	Missense_Mutation	2	99993052	C	T	31	65
BRCA	TCGA-BH-A0HU	CXorf40A	SNP	Missense_Mutation	23	148627391	T	G	54	66
BRCA	TCGA-BH-A0HU	GPKOW	SNP	Missense_Mutation	23	48972279	T	C	60	60
BRCA	TCGA-BH-A0HU	PIK3CA	DEL	In_Frame_Del	3	178916929	GGCAACCGT	-	35	97
BRCA	TCGA-BH-A0HU	DCHS2	SNP	Missense_Mutation	4	155180776	T	A	50	84
BRCA	TCGA-BH-A0HU	CYP4V2	DEL	Frame_Shift_Del	4	187113181	GGACG	-	39	38
BRCA	TCGA-BH-A0HU	TADA2B	DEL	In_Frame_Del	4	7056249	TGAAGCGCAAGA	-	55	50
BRCA	TCGA-BH-A0HU	ZNF608	SNP	Silent	5	123982737	G	A	34	58
BRCA	TCGA-BH-A0HU	POC5	SNP	Missense_Mutation	5	74998503	C	A	28	49
BRCA	TCGA-BH-A0HU	COL19A1	SNP	Missense_Mutation	6	70639432	G	A	40	97
BRCA	TCGA-BH-A0HU	MDN1	SNP	Missense_Mutation	6	90402292	C	G	26	46
BRCA	TCGA-BH-A0HU	TRBV5-6	SNP	Silent	7	142131461	G	A	40	50
BRCA	TCGA-BH-A0HU	RP1L1	SNP	Silent	8	10466220	G	T	46	48
BRCA	TCGA-BH-A0HU	TSTA3	SNP	Missense_Mutation	8	144696871	C	T	27	43
BRCA	TCGA-BH-A0HU	NR4A3	SNP	Missense_Mutation	9	102626006	G	A	37	69
BRCA	TCGA-BH-A0HU	HSPA5	SNP	Silent	9	128001807	G	A	43	47
BRCA	TCGA-BH-A0HW	FAM63A	SNP	Missense_Mutation	1	150973769	T	A	56	62
BRCA	TCGA-BH-A0HW	CRTC2	SNP	Missense_Mutation	1	153925831	G	C	33	76
BRCA	TCGA-BH-A0HW	OR10K2	SNP	Silent	1	158390579	C	T	25	52
BRCA	TCGA-BH-A0HW	ARID1A	SNP	Nonsense_Mutation	1	27087880	C	T	21	97
BRCA	TCGA-BH-A0HW	NODAL	DEL	Frame_Shift_Del	10	72195490	A	-	5	63
BRCA	TCGA-BH-A0HW	CEP55	INS	Frame_Shift_Ins	10	95287850	-	C	14	31
BRCA	TCGA-BH-A0HW	CAPRIN1	SNP	Missense_Mutation	11	34093289	A	G	14	90
BRCA	TCGA-BH-A0HW	FOLH1	SNP	Missense_Mutation	11	49192781	T	A	62	78
BRCA	TCGA-BH-A0HW	TTC9C	SNP	Missense_Mutation	11	62505789	A	T	10	74
BRCA	TCGA-BH-A0HW	DNAJC22	SNP	Missense_Mutation	12	49742746	G	A	38	93
BRCA	TCGA-BH-A0HW	KRT81	SNP	Nonsense_Mutation	12	52681780	C	T	18	82
BRCA	TCGA-BH-A0HW	LOC400352	DEL	Frame_Shift_Del	15	32792075	G	-	48	48
BRCA	TCGA-BH-A0HW	RAD51	SNP	Missense_Mutation	15	41021711	T	G	55	93
BRCA	TCGA-BH-A0HW	SLC16A13	SNP	Missense_Mutation	17	6940081	C	T	26	57
BRCA	TCGA-BH-A0HW	LRP3	SNP	Missense_Mutation	19	33693784	C	T	19	68
BRCA	TCGA-BH-A0HW	LRP3	DEL	Frame_Shift_Del	19	33695733	G	-	35	80
BRCA	TCGA-BH-A0HW	CATSPERG	SNP	Missense_Mutation	19	38861256	C	T	23	58
BRCA	TCGA-BH-A0HW	ZSCAN5B	SNP	Missense_Mutation	19	56703268	C	T	27	56
BRCA	TCGA-BH-A0HW	ZNF135	INS	Frame_Shift_Ins	19	58578672	-	A	29	50
BRCA	TCGA-BH-A0HW	ELAVL1	SNP	Missense_Mutation	19	8056669	C	T	31	75
BRCA	TCGA-BH-A0HW	WNT6	SNP	Missense_Mutation	2	219735910	G	A	38	97
BRCA	TCGA-BH-A0HW	PID1	SNP	Missense_Mutation	2	229890461	C	T	27	74
BRCA	TCGA-BH-A0HW	KHK	DEL	Frame_Shift_Del	2	27320451	C	-	30	85
BRCA	TCGA-BH-A0HW	PORCN	SNP	Missense_Mutation	23	48378800	A	T	11	73
BRCA	TCGA-BH-A0HW	RPS4X	SNP	Missense_Mutation	23	71493102	T	G	63	83
BRCA	TCGA-BH-A0HW	MECOM	SNP	Silent	3	168813030	G	A	46	82
BRCA	TCGA-BH-A0HW	MUC4	SNP	Missense_Mutation	3	195512080	C	T	22	53
BRCA	TCGA-BH-A0HW	LOC100128827	DEL	Frame_Shift_Del	3	197837548	G	-	35	51
BRCA	TCGA-BH-A0HW	EOMES	SNP	Missense_Mutation	3	27761733	G	A	38	84
BRCA	TCGA-BH-A0HW	WHSC2	DEL	Frame_Shift_Del	4	1987550	C	-	18	63
BRCA	TCGA-BH-A0HW	PCDHA6	SNP	Silent	5	140209681	C	T	28	60
BRCA	TCGA-BH-A0HW	CNOT8	SNP	Missense_Mutation	5	154254920	C	T	26	66
BRCA	TCGA-BH-A0HW	SLC9A3	DEL	Frame_Shift_Del	5	475689	G	-	39	34
BRCA	TCGA-BH-A0HW	WBSCR28	SNP	Silent	7	73279580	C	T	26	52
BRCA	TCGA-BH-A0HW	TACC1	SNP	Missense_Mutation	8	38696043	G	A	39	68
BRCA	TCGA-BH-A0HW	GDF6	SNP	Missense_Mutation	8	97172770	T	A	50	58
BRCA	TCGA-BH-A0HW	GABBR2	SNP	Silent	9	101052989	G	A	40	55
BRCA	TCGA-BH-A0HW	IFNB1	SNP	Missense_Mutation	9	21077643	C	T	27	47
BRCA	TCGA-BH-A0HW	PTPRD	SNP	Missense_Mutation	9	8486284	G	T	43	99
BRCA	TCGA-BH-A0HX	NUP210L	SNP	Missense_Mutation	1	153991518	G	C	42	79
BRCA	TCGA-BH-A0HX	FMO3	SNP	Splice_Site	1	171086238	A	T	7	91
BRCA	TCGA-BH-A0HX	HMCN1	SNP	Missense_Mutation	1	185964013	C	T	21	69
BRCA	TCGA-BH-A0HX	HMCN1	SNP	Missense_Mutation	1	185985185	C	A	22	99
BRCA	TCGA-BH-A0HX	USH2A	SNP	Missense_Mutation	1	216390881	C	G	17	91
BRCA	TCGA-BH-A0HX	ESRRG	SNP	Silent	1	216737742	C	T	25	69
BRCA	TCGA-BH-A0HX	MACF1	SNP	Missense_Mutation	1	39888058	G	C	33	100
BRCA	TCGA-BH-A0HX	ASB17	SNP	Silent	1	76387978	C	T	32	75
BRCA	TCGA-BH-A0HX	IDI1	SNP	Missense_Mutation	10	1087317	G	T	43	100
BRCA	TCGA-BH-A0HX	FAM171A1	INS	Frame_Shift_Ins	10	15256542	-	TG	30	82
BRCA	TCGA-BH-A0HX	PRKCQ	SNP	Missense_Mutation	10	6472861	C	T	22	97
BRCA	TCGA-BH-A0HX	SSRP1	SNP	Silent	11	57102000	G	A	42	50
BRCA	TCGA-BH-A0HX	SHANK2	SNP	Missense_Mutation	11	70331861	C	T	19	100
BRCA	TCGA-BH-A0HX	LOC341378	SNP	Missense_Mutation	12	106565245	C	T	27	58
BRCA	TCGA-BH-A0HX	EP400	SNP	Silent	12	132529374	C	T	19	51
BRCA	TCGA-BH-A0HX	MCRS1	SNP	Missense_Mutation	12	49956786	G	C	48	71
BRCA	TCGA-BH-A0HX	LOC100288809	SNP	Missense_Mutation	12	53201094	G	A	42	51
BRCA	TCGA-BH-A0HX	AAAS	SNP	Missense_Mutation	12	53702291	C	T	30	81
BRCA	TCGA-BH-A0HX	PTPN6	SNP	Silent	12	7069339	G	A	36	85
BRCA	TCGA-BH-A0HX	ERCC5	SNP	Missense_Mutation	13	103504559	T	G	50	59
BRCA	TCGA-BH-A0HX	TTC5	SNP	Missense_Mutation	14	20764583	G	C	33	79
BRCA	TCGA-BH-A0HX	PRMT5	SNP	Missense_Mutation	14	23391766	G	A	41	74
BRCA	TCGA-BH-A0HX	MYH7	SNP	Missense_Mutation	14	23886884	G	A	42	99
BRCA	TCGA-BH-A0HX	LRRC16B	SNP	Silent	14	24525586	C	T	18	65
BRCA	TCGA-BH-A0HX	UACA	SNP	Splice_site	15	70949465	C	A	18	98
BRCA	TCGA-BH-A0HX	SPSB3	SNP	Missense_Mutation	16	1827142	G	C	37	61
BRCA	TCGA-BH-A0HX	ATXN2L	SNP	Missense_Mutation	16	28842013	G	A	42	74
BRCA	TCGA-BH-A0HX	HAS3	SNP	Missense_Mutation	16	69143684	A	G	10	79
BRCA	TCGA-BH-A0HX	CACNA1G	SNP	Missense_Mutation	17	48694930	G	A	37	99
BRCA	TCGA-BH-A0HX	HELZ	SNP	Silent	17	65074482	C	T	28	81
BRCA	TCGA-BH-A0HX	TP53	SNP	Missense_Mutation	17	7578525	G	C	42	63
BRCA	TCGA-BH-A0HX	ASXL3	SNP	Silent	18	31325065	G	C	38	45
BRCA	TCGA-BH-A0HX	CNDP1	SNP	Missense_Mutation	18	72244205	C	G	32	54
BRCA	TCGA-BH-A0HX	ZNF540	SNP	Missense_Mutation	19	38103478	C	A	29	74
BRCA	TCGA-BH-A0HX	AP2A1	SNP	Nonsense_Mutation	19	50295238	C	T	31	72
BRCA	TCGA-BH-A0HX	ZNF320	SNP	Missense_Mutation	19	53384808	A	G	8	78
BRCA	TCGA-BH-A0HX	PLA2R1	SNP	Missense_Mutation	2	160885378	T	C	49	63
BRCA	TCGA-BH-A0HX	MYT1L	SNP	Silent	2	1812867	G	A	45	56
BRCA	TCGA-BH-A0HX	TLR7	SNP	Missense_Mutation	23	12905642	G	A	44	76
BRCA	TCGA-BH-A0HX	PPEF1	SNP	Missense_Mutation	23	18822016	G	C	45	66
BRCA	TCGA-BH-A0HX	RPGR	SNP	Splice_Site	23	38160625	C	A	32	95
BRCA	TCGA-BH-A0HX	TNIK	SNP	Silent	3	170819279	G	T	43	47
BRCA	TCGA-BH-A0HX	GADL1	SNP	Missense_Mutation	3	30769808	T	A	50	68
BRCA	TCGA-BH-A0HX	ALPK1	SNP	Missense_Mutation	4	113333139	C	T	22	93
BRCA	TCGA-BH-A0HX	FBXO8	SNP	Silent	4	175184103	G	T	41	61
BRCA	TCGA-BH-A0HX	LOC644578	SNP	Missense_Mutation	4	64216347	G	A	40	51
BRCA	TCGA-BH-A0HX	PCDHB6	SNP	Missense_Mutation	5	140530844	C	G	24	43
BRCA	TCGA-BH-A0HX	PCDHGB4	SNP	Silent	5	140769020	G	T	46	64
BRCA	TCGA-BH-A0HX	FAT2	SNP	Silent	5	150947878	C	T	21	54
BRCA	TCGA-BH-A0HX	EGFLAM	SNP	Missense_Mutation	5	38407032	C	G	22	52
BRCA	TCGA-BH-A0HX	SEMA5A	SNP	Missense_Mutation	5	9154711	T	A	54	85
BRCA	TCGA-BH-A0HX	UNC5D	SNP	Splice_Site	8	35563480	G	T	36	86
BRCA	TCGA-BH-A0HY	RBM8A	SNP	Missense_Mutation	1	145507682	G	A	33	94
BRCA	TCGA-BH-A0HY	CGN	SNP	Nonsense_Mutation	1	151509266	C	T	27	70
BRCA	TCGA-BH-A0HY	PKLR	SNP	Missense_Mutation	1	155265012	C	T	27	65
BRCA	TCGA-BH-A0HY	GORAB	SNP	Missense_Mutation	1	170521254	C	T	19	96
BRCA	TCGA-BH-A0HY	LBR	SNP	Missense_Mutation	1	225609886	G	A	43	83
BRCA	TCGA-BH-A0HY	OR2L1P	SNP	Missense_Mutation	1	248154135	C	T	19	53
BRCA	TCGA-BH-A0HY	OR2L5	SNP	Silent	1	248185375	A	G	16	24
BRCA	TCGA-BH-A0HY	NUP160	SNP	Missense_Mutation	11	47861966	C	A	18	46
BRCA	TCGA-BH-A0HY	OR4C16	SNP	Missense_Mutation	11	55340113	T	A	51	63
BRCA	TCGA-BH-A0HY	PKP2	SNP	Missense_Mutation	12	32955486	G	A	39	82
BRCA	TCGA-BH-A0HY	SMUG1	SNP	Splice_site	12	54577726	T	C	51	52
BRCA	TCGA-BH-A0HY	CHD4	SNP	Silent	12	6697539	G	A	42	67
BRCA	TCGA-BH-A0HY	TSPAN8	SNP	Silent	12	71519153	C	T	17	51
BRCA	TCGA-BH-A0HY	HTR2A	SNP	Missense_Mutation	13	47466593	T	C	59	93
BRCA	TCGA-BH-A0HY	DCAF11	SNP	Missense_Mutation	14	24586486	C	T	22	96
BRCA	TCGA-BH-A0HY	AKAP6	SNP	Missense_Mutation	14	33004940	C	A	32	71
BRCA	TCGA-BH-A0HY	MYH11	SNP	Missense_Mutation	16	15853452	G	T	34	100
BRCA	TCGA-BH-A0HY	OSBPL7	SNP	Missense_Mutation	17	45895952	C	T	18	80
BRCA	TCGA-BH-A0HY	ALPK2	SNP	Missense_Mutation	18	56203182	C	G	32	64
BRCA	TCGA-BH-A0HY	CD226	SNP	Missense_Mutation	18	67562982	C	T	27	50
BRCA	TCGA-BH-A0HY	QPCTL	SNP	Silent	19	46206220	G	A	39	28
BRCA	TCGA-BH-A0HY	LILRA2	SNP	Missense_Mutation	19	55086420	C	T	31	50
BRCA	TCGA-BH-A0HY	SAFB2	SNP	Missense_Mutation	19	5587936	C	T	27	48
BRCA	TCGA-BH-A0HY	HCN2	DEL	In_Frame_Del	19	615906	TGG	-	51	85
BRCA	TCGA-BH-A0HY	HECW2	SNP	Missense_Mutation	2	197080599	C	A	25	72
BRCA	TCGA-BH-A0HY	SF3B1	SNP	Missense_Mutation	2	198266542	T	C	49	93
BRCA	TCGA-BH-A0HY	C2orf47	SNP	Missense_Mutation	2	200820884	G	T	43	99
BRCA	TCGA-BH-A0HY	EIF2B4	SNP	Silent	2	27591877	G	A	35	49
BRCA	TCGA-BH-A0HY	SLC4A1AP	SNP	Nonsense_Mutation	2	27910885	C	A	29	76
BRCA	TCGA-BH-A0HY	REG1A	SNP	Splice_site	2	79349250	A	C	3	56
BRCA	TCGA-BH-A0HY	FAM217B	SNP	Silent	20	58519658	C	T	26	57
BRCA	TCGA-BH-A0HY	RRP1	SNP	Missense_Mutation	21	45213278	T	G	62	57
BRCA	TCGA-BH-A0HY	TRAPPC10	SNP	Missense_Mutation	21	45513998	G	A	33	76
BRCA	TCGA-BH-A0HY	TSSK2	SNP	Missense_Mutation	22	19119862	C	A	26	67
BRCA	TCGA-BH-A0HY	ODZ1	SNP	Silent	23	123615597	G	A	36	67
BRCA	TCGA-BH-A0HY	ZNF280C	SNP	Missense_Mutation	23	129349834	T	C	64	57
BRCA	TCGA-BH-A0HY	SAGE1	SNP	Missense_Mutation	23	134990730	T	G	61	49
BRCA	TCGA-BH-A0HY	CXorf66	SNP	Silent	23	139038667	T	C	51	50
BRCA	TCGA-BH-A0HY	SLC9A7	SNP	Missense_Mutation	23	46491044	C	T	31	76
BRCA	TCGA-BH-A0HY	SSX1	DNP	Missense_Mutation	23	48117208	TC	AT	54	59
BRCA	TCGA-BH-A0HY	ACPP	SNP	Missense_Mutation	3	132047117	C	T	31	71
BRCA	TCGA-BH-A0HY	SERPINI1	SNP	Missense_Mutation	3	167510446	G	T	48	53
BRCA	TCGA-BH-A0HY	TBC1D5	SNP	Nonsense_Mutation	3	17415993	C	T	18	98
BRCA	TCGA-BH-A0HY	FILIP1L	SNP	Missense_Mutation	3	99567698	G	A	40	89
BRCA	TCGA-BH-A0HY	PPIP5K2	SNP	Silent	5	102502945	G	A	33	59
BRCA	TCGA-BH-A0HY	PCDHA4	SNP	Silent	5	140187582	C	T	19	49
BRCA	TCGA-BH-A0HY	GEMIN5	SNP	Splice_Site	5	154282237	C	A	24	97
BRCA	TCGA-BH-A0HY	NSD1	SNP	Silent	5	176721812	G	A	33	51
BRCA	TCGA-BH-A0HY	CDH18	SNP	Missense_Mutation	5	19483502	A	C	6	74
BRCA	TCGA-BH-A0HY	RICTOR	SNP	Missense_Mutation	5	39002728	C	T	28	98
BRCA	TCGA-BH-A0HY	SLC38A9	SNP	Silent	5	54931405	A	G	3	46
BRCA	TCGA-BH-A0HY	TPPP	SNP	Splice_site	5	677867	G	C	45	73
BRCA	TCGA-BH-A0HY	UBD	SNP	Silent	6	29523762	A	G	5	51
BRCA	TCGA-BH-A0HY	BACH2	SNP	Missense_Mutation	6	90660896	T	G	58	67
BRCA	TCGA-BH-A0HY	ABCA13	SNP	Silent	7	48284230	A	T	6	45
BRCA	TCGA-BH-A0HY	STYXL1	SNP	Missense_Mutation	7	75630222	C	T	31	47
BRCA	TCGA-BH-A0HY	ZFHX4	SNP	Missense_Mutation	8	77767190	C	T	23	99
BRCA	TCGA-BH-A0HY	MMP16	SNP	Missense_Mutation	8	89086840	G	T	33	67
BRCA	TCGA-BH-A0HY	MAMDC2	SNP	Splice_Site	9	72723399	G	T	44	97
BRCA	TCGA-BH-A0RX	KIAA1324	SNP	Missense_Mutation	1	109727733	C	T	19	97
BRCA	TCGA-BH-A0RX	POLR3C	SNP	Missense_Mutation	1	145608467	C	T	23	94
BRCA	TCGA-BH-A0RX	VANGL2	SNP	Missense_Mutation	1	160389104	C	T	23	93
BRCA	TCGA-BH-A0RX	TUBGCP2	SNP	Missense_Mutation	10	135099043	G	T	44	51
BRCA	TCGA-BH-A0RX	TACR2	SNP	Missense_Mutation	10	71175895	C	T	23	47
BRCA	TCGA-BH-A0RX	MUC6	DEL	Frame_Shift_Del	11	1019367	GC	-	42	55
BRCA	TCGA-BH-A0RX	CHRM4	SNP	Silent	11	46406905	C	T	31	59
BRCA	TCGA-BH-A0RX	HELB	SNP	Missense_Mutation	12	66717817	G	T	41	57
BRCA	TCGA-BH-A0RX	TFDP1	SNP	Missense_Mutation	13	114292199	G	T	35	69
BRCA	TCGA-BH-A0RX	PCNX	SNP	Missense_Mutation	14	71543011	G	A	48	81
BRCA	TCGA-BH-A0RX	ERCC4	SNP	Missense_Mutation	16	14029554	C	T	31	95
BRCA	TCGA-BH-A0RX	SHISA6	SNP	Silent	17	11461156	C	A	30	64
BRCA	TCGA-BH-A0RX	C17orf102	DNP	Missense_Mutation	17	32906191	CT	TA	32	54
BRCA	TCGA-BH-A0RX	ARHGAP27	SNP	Missense_Mutation	17	43473379	A	G	11	58
BRCA	TCGA-BH-A0RX	CYGB	SNP	Silent	17	74527737	G	A	45	71
BRCA	TCGA-BH-A0RX	TP53	SNP	Nonsense_Mutation	17	7574003	G	A	39	57
BRCA	TCGA-BH-A0RX	FAM117B	DEL	Frame_Shift_Del	2	203591033	AAAG	-	13	86
BRCA	TCGA-BH-A0RX	NCAM2	SNP	Missense_Mutation	21	22696711	G	A	34	73
BRCA	TCGA-BH-A0RX	DZIP1L	SNP	Missense_Mutation	3	137813715	G	A	38	58
BRCA	TCGA-BH-A0RX	ZIC4	SNP	Silent	3	147108957	C	T	27	54
BRCA	TCGA-BH-A0RX	FAM53C	DEL	Frame_Shift_Del	5	137681156	GGCGACC	-	47	71
BRCA	TCGA-BH-A0RX	ITPR3	SNP	Silent	6	33655053	G	A	39	23
BRCA	TCGA-BH-A0RX	CARD11	SNP	Missense_Mutation	7	2987388	G	A	40	67
BRCA	TCGA-BH-A0RX	SEMA3E	SNP	Missense_Mutation	7	82997122	G	A	37	76
BRCA	TCGA-BH-A0RX	GRM3	SNP	Silent	7	86469059	C	T	19	43
BRCA	TCGA-BH-A0RX	ST18	SNP	Missense_Mutation	8	53038615	C	T	21	79
BRCA	TCGA-BH-A0RX	C9orf144B	SNP	Missense_Mutation	9	34725432	C	T	27	59
BRCA	TCGA-BH-A0RX	C9orf144B	SNP	Missense_Mutation	9	34725438	A	G	5	59
BRCA	TCGA-BH-A0W3	MMRN2	SNP	Silent	10	88703812	G	A	47	59
BRCA	TCGA-BH-A0W3	KCNK4	SNP	Missense_Mutation	11	64064601	T	A	51	58
BRCA	TCGA-BH-A0W3	PDE2A	SNP	Splice_Site	11	72290428	C	G	24	82
BRCA	TCGA-BH-A0W3	PDE2A	SNP	Silent	11	72290581	C	T	30	61
BRCA	TCGA-BH-A0W3	PDE2A	SNP	Missense_Mutation	11	72290595	C	T	29	93
BRCA	TCGA-BH-A0W3	TMEM120B	SNP	Missense_Mutation	12	122212588	G	A	39	99
BRCA	TCGA-BH-A0W3	AICDA	SNP	Missense_Mutation	12	8759472	G	T	33	94
BRCA	TCGA-BH-A0W3	ELK3	SNP	Missense_Mutation	12	96653588	C	A	23	98
BRCA	TCGA-BH-A0W3	MYO16	SNP	Missense_Mutation	13	109617223	G	T	46	58
BRCA	TCGA-BH-A0W3	LRCH1	SNP	Missense_Mutation	13	47279264	G	A	34	57
BRCA	TCGA-BH-A0W3	LMO7	SNP	Silent	13	76370783	A	G	8	41
BRCA	TCGA-BH-A0W3	GOLGA8F	SNP	Missense_Mutation	15	28630358	A	C	11	55
BRCA	TCGA-BH-A0W3	CATSPER2	SNP	Missense_Mutation	15	43939311	G	C	33	45
BRCA	TCGA-BH-A0W3	COQ9	DEL	Frame_Shift_Del	16	57493549	T	-	54	57
BRCA	TCGA-BH-A0W3	ELAC2	SNP	Silent	17	12901771	G	A	39	91
BRCA	TCGA-BH-A0W3	SCN2A	SNP	Silent	2	166245338	C	T	19	49
BRCA	TCGA-BH-A0W3	MYH7B	SNP	Silent	20	33568852	C	T	21	51
BRCA	TCGA-BH-A0W3	CP	SNP	Silent	3	148930395	G	A	35	56
BRCA	TCGA-BH-A0W3	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-BH-A0W3	SPATA5	SNP	Silent	4	123850227	T	C	55	54
BRCA	TCGA-BH-A0W3	FSTL4	SNP	Missense_Mutation	5	132585181	A	T	10	88
BRCA	TCGA-BH-A0W3	WEE2	SNP	Silent	7	141427142	A	T	7	48
BRCA	TCGA-BH-A0W3	ZKSCAN1	SNP	Missense_Mutation	7	99631717	C	G	30	60
BRCA	TCGA-BH-A0W4	VCAM1	SNP	Splice_Site	1	101196752	A	G	7	76
BRCA	TCGA-BH-A0W4	CDK11A	SNP	Missense_Mutation	1	1653040	T	A	56	52
BRCA	TCGA-BH-A0W4	TCEB3	SNP	Missense_Mutation	1	24077576	A	G	4	51
BRCA	TCGA-BH-A0W4	ZRANB1	SNP	Missense_Mutation	10	126655277	A	T	12	93
BRCA	TCGA-BH-A0W4	PPYR1	SNP	Missense_Mutation	10	47087301	C	G	22	95
BRCA	TCGA-BH-A0W4	PCDH15	SNP	Nonsense_Mutation	10	55626527	C	A	30	100
BRCA	TCGA-BH-A0W4	C11orf40	SNP	Missense_Mutation	11	4594539	A	G	14	58
BRCA	TCGA-BH-A0W4	C11orf84	SNP	Missense_Mutation	11	63585750	G	A	37	77
BRCA	TCGA-BH-A0W4	EED	SNP	Missense_Mutation	11	85977150	T	C	49	90
BRCA	TCGA-BH-A0W4	KIAA1033	SNP	Nonsense_Mutation	12	105543489	C	T	31	68
BRCA	TCGA-BH-A0W4	CDKN1B	DEL	Frame_Shift_Del	12	12870900	CG	-	23	64
BRCA	TCGA-BH-A0W4	POLE	SNP	Missense_Mutation	12	133250202	C	T	32	100
BRCA	TCGA-BH-A0W4	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-BH-A0W4	GOLGA6L2	SNP	Missense_Mutation	15	23685275	C	T	17	50
BRCA	TCGA-BH-A0W4	CORO2B	SNP	Missense_Mutation	15	69003905	G	T	43	100
BRCA	TCGA-BH-A0W4	ZNF592	DEL	Frame_Shift_Del	15	85325994	A	-	8	74
BRCA	TCGA-BH-A0W4	CTCF	SNP	Missense_Mutation	16	67645919	C	T	31	100
BRCA	TCGA-BH-A0W4	EFTUD2	SNP	Missense_Mutation	17	42964087	C	A	30	75
BRCA	TCGA-BH-A0W4	GNA15	SNP	Silent	19	3151786	C	G	21	61
BRCA	TCGA-BH-A0W4	OR7D2	SNP	Silent	19	9296535	C	T	29	47
BRCA	TCGA-BH-A0W4	ANO7	SNP	Silent	2	242155637	C	T	19	40
BRCA	TCGA-BH-A0W4	HLCS	SNP	Missense_Mutation	21	38308910	C	T	31	53
BRCA	TCGA-BH-A0W4	TAF1	SNP	Missense_Mutation	23	70598836	C	T	30	97
BRCA	TCGA-BH-A0W4	CHCHD6	SNP	Missense_Mutation	3	126445927	G	A	45	72
BRCA	TCGA-BH-A0W4	LEPREL1	SNP	Missense_Mutation	3	189692391	C	T	19	83
BRCA	TCGA-BH-A0W4	ITPR1	SNP	Missense_Mutation	3	4726865	A	G	11	91
BRCA	TCGA-BH-A0W4	NPY1R	SNP	Missense_Mutation	4	164247028	T	G	49	79
BRCA	TCGA-BH-A0W4	APBB3	SNP	Missense_Mutation	5	139939900	T	C	49	91
BRCA	TCGA-BH-A0W4	DAB2	SNP	Missense_Mutation	5	39394418	G	A	33	91
BRCA	TCGA-BH-A0W4	MET	SNP	Missense_Mutation	7	116371755	C	G	27	65
BRCA	TCGA-BH-A0W4	PRKAG2	SNP	Missense_Mutation	7	151573642	C	T	23	55
BRCA	TCGA-BH-A0W5	ZP4	SNP	Missense_Mutation	1	238053448	C	A	32	58
BRCA	TCGA-BH-A0W5	MMACHC	SNP	Missense_Mutation	1	45966053	T	C	51	55
BRCA	TCGA-BH-A0W5	PTPN5	SNP	Missense_Mutation	11	18764029	G	A	44	53
BRCA	TCGA-BH-A0W5	APLNR	SNP	Missense_Mutation	11	57003835	G	A	44	55
BRCA	TCGA-BH-A0W5	RTN4RL2	SNP	Missense_Mutation	11	57235426	A	C	6	77
BRCA	TCGA-BH-A0W5	ANO4	SNP	Missense_Mutation	12	101505394	G	A	46	100
BRCA	TCGA-BH-A0W5	HNF1A	SNP	Missense_Mutation	12	121431482	G	A	37	95
BRCA	TCGA-BH-A0W5	TRIP11	SNP	Missense_Mutation	14	92505990	G	C	47	100
BRCA	TCGA-BH-A0W5	LARP6	SNP	Silent	15	71125333	G	A	40	39
BRCA	TCGA-BH-A0W5	KIFC3	DEL	In_Frame_Del	16	57794309	TTC	-	60	86
BRCA	TCGA-BH-A0W5	CTCF	SNP	Missense_Mutation	16	67645923	A	C	6	91
BRCA	TCGA-BH-A0W5	SLC35G3	SNP	Missense_Mutation	17	33520540	C	T	27	53
BRCA	TCGA-BH-A0W5	CHAF1A	SNP	Missense_Mutation	19	4429539	A	G	14	90
BRCA	TCGA-BH-A0W5	SCN9A	SNP	Missense_Mutation	2	167159635	A	G	16	62
BRCA	TCGA-BH-A0W5	ELF4	SNP	Silent	23	129206310	G	A	39	37
BRCA	TCGA-BH-A0W5	MAGEB4	SNP	Missense_Mutation	23	30261121	C	A	26	51
BRCA	TCGA-BH-A0W5	SLITRK3	SNP	Missense_Mutation	3	164908518	A	G	16	91
BRCA	TCGA-BH-A0W5	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0W5	PPARGC1B	SNP	Missense_Mutation	5	149216402	G	A	34	75
BRCA	TCGA-BH-A0W5	MAP3K1	SNP	Nonsense_Mutation	5	56177500	A	T	3	58
BRCA	TCGA-BH-A0W5	MAP3K1	DEL	Frame_Shift_Del	5	56178253	C	-	30	56
BRCA	TCGA-BH-A0W5	NKAPL	SNP	Missense_Mutation	6	28227597	G	A	37	83
BRCA	TCGA-BH-A0W5	STK19	SNP	Missense_Mutation	6	31939963	C	G	27	54
BRCA	TCGA-BH-A0W5	RPL10A	SNP	Silent	6	35436736	G	A	39	48
BRCA	TCGA-BH-A0W5	MUC17	SNP	Missense_Mutation	7	100677967	C	G	25	67
BRCA	TCGA-BH-A0W5	SSNA1	SNP	Missense_Mutation	9	140083619	G	A	33	91
BRCA	TCGA-BH-A0W7	SASS6	SNP	Missense_Mutation	1	100598368	C	G	29	77
BRCA	TCGA-BH-A0W7	VPS13D	SNP	Missense_Mutation	1	12374365	C	G	29	96
BRCA	TCGA-BH-A0W7	LOC440563	SNP	Missense_Mutation	1	13183034	C	A	30	52
BRCA	TCGA-BH-A0W7	HIST2H2AC	SNP	Silent	1	149858776	C	G	30	60
BRCA	TCGA-BH-A0W7	RPTN	SNP	Silent	1	152130351	C	G	29	54
BRCA	TCGA-BH-A0W7	GATAD2B	SNP	Missense_Mutation	1	153785831	C	G	32	62
BRCA	TCGA-BH-A0W7	KIFAP3	SNP	Splice_Site	1	170008430	C	G	32	75
BRCA	TCGA-BH-A0W7	OR2L8	SNP	Missense_Mutation	1	248112192	C	A	29	54
BRCA	TCGA-BH-A0W7	LRRC41	SNP	Silent	1	46763262	C	G	29	63
BRCA	TCGA-BH-A0W7	SPATA6	SNP	Missense_Mutation	1	48865165	G	A	45	87
BRCA	TCGA-BH-A0W7	ICMT	SNP	Missense_Mutation	1	6292039	G	C	33	66
BRCA	TCGA-BH-A0W7	ALG6	SNP	Missense_Mutation	1	63862213	T	G	61	89
BRCA	TCGA-BH-A0W7	ABCC2	SNP	Missense_Mutation	10	101567200	G	C	33	53
BRCA	TCGA-BH-A0W7	FAM208B	SNP	Nonsense_Mutation	10	5798685	C	G	29	63
BRCA	TCGA-BH-A0W7	SFMBT2	SNP	Missense_Mutation	10	7217979	A	G	7	90
BRCA	TCGA-BH-A0W7	NUDT13	SNP	Silent	10	74890577	C	T	32	58
BRCA	TCGA-BH-A0W7	PDE6C	SNP	Missense_Mutation	10	95380536	G	A	45	86
BRCA	TCGA-BH-A0W7	TM9SF3	SNP	Silent	10	98303890	G	A	45	84
BRCA	TCGA-BH-A0W7	TRPC6	SNP	Missense_Mutation	11	101324393	C	T	29	100
BRCA	TCGA-BH-A0W7	NXPE1	SNP	Missense_Mutation	11	114401498	C	G	32	53
BRCA	TCGA-BH-A0W7	BTBD10	SNP	Missense_Mutation	11	13443293	C	T	31	98
BRCA	TCGA-BH-A0W7	OR52K1	SNP	Missense_Mutation	11	4510827	C	G	29	51
BRCA	TCGA-BH-A0W7	OR5D14	SNP	Missense_Mutation	11	55563592	C	G	32	45
BRCA	TCGA-BH-A0W7	AHNAK	SNP	Missense_Mutation	11	62287266	C	T	29	77
BRCA	TCGA-BH-A0W7	KIAA1731	SNP	Missense_Mutation	11	93431181	G	C	45	63
BRCA	TCGA-BH-A0W7	AMOTL1	SNP	Silent	11	94501722	G	A	45	57
BRCA	TCGA-BH-A0W7	AP2A2	SNP	Missense_Mutation	11	986843	G	A	37	93
BRCA	TCGA-BH-A0W7	KIAA1033	SNP	Missense_Mutation	12	105557985	G	A	33	76
BRCA	TCGA-BH-A0W7	HNF1A	SNP	Missense_Mutation	12	121426669	G	T	36	54
BRCA	TCGA-BH-A0W7	GPR133	SNP	Silent	12	131476808	C	T	29	54
BRCA	TCGA-BH-A0W7	SLCO1B3	SNP	Missense_Mutation	12	21054322	G	C	45	86
BRCA	TCGA-BH-A0W7	BICD1	SNP	Silent	12	32491861	C	T	29	83
BRCA	TCGA-BH-A0W7	ALG10B	SNP	Missense_Mutation	12	38712174	A	C	12	69
BRCA	TCGA-BH-A0W7	KCNA5	SNP	Silent	12	5155077	C	T	29	55
BRCA	TCGA-BH-A0W7	KRT72	SNP	Missense_Mutation	12	52992731	C	T	30	79
BRCA	TCGA-BH-A0W7	ESPL1	SNP	Missense_Mutation	12	53662952	G	C	41	65
BRCA	TCGA-BH-A0W7	ERBB3	SNP	Missense_Mutation	12	56490901	C	G	32	68
BRCA	TCGA-BH-A0W7	ESYT1	SNP	Missense_Mutation	12	56531365	C	T	29	81
BRCA	TCGA-BH-A0W7	HMGA2	SNP	Missense_Mutation	12	66308905	C	T	29	58
BRCA	TCGA-BH-A0W7	TMBIM4	SNP	Missense_Mutation	12	66563728	C	G	26	77
BRCA	TCGA-BH-A0W7	LGR5	SNP	Missense_Mutation	12	71976250	G	C	45	96
BRCA	TCGA-BH-A0W7	TRHDE	SNP	Missense_Mutation	12	73012710	C	G	29	63
BRCA	TCGA-BH-A0W7	OTOGL	SNP	Nonsense_Mutation	12	80650138	C	T	29	80
BRCA	TCGA-BH-A0W7	OTOGL	SNP	Missense_Mutation	12	80650216	C	A	30	65
BRCA	TCGA-BH-A0W7	HSPH1	SNP	Missense_Mutation	13	31719870	C	G	32	66
BRCA	TCGA-BH-A0W7	OR4K15	SNP	Missense_Mutation	14	20443846	C	A	20	50
BRCA	TCGA-BH-A0W7	CHD8	SNP	Silent	14	21863271	C	A	29	57
BRCA	TCGA-BH-A0W7	PCNX	SNP	Missense_Mutation	14	71492886	G	C	46	100
BRCA	TCGA-BH-A0W7	SERPINA12	SNP	Silent	14	94964318	G	A	45	50
BRCA	TCGA-BH-A0W7	GABRA5	SNP	Silent	15	27188366	C	T	29	48
BRCA	TCGA-BH-A0W7	RYR3	SNP	Silent	15	33952547	G	A	45	63
BRCA	TCGA-BH-A0W7	MAPKBP1	SNP	Missense_Mutation	15	42104774	G	A	45	78
BRCA	TCGA-BH-A0W7	ACSBG1	SNP	Silent	15	78475050	G	A	48	55
BRCA	TCGA-BH-A0W7	ADAMTSL3	SNP	Missense_Mutation	15	84651757	C	T	26	63
BRCA	TCGA-BH-A0W7	PDXDC1	SNP	Silent	16	15127253	G	A	37	47
BRCA	TCGA-BH-A0W7	GPR139	SNP	Missense_Mutation	16	20043114	G	C	45	63
BRCA	TCGA-BH-A0W7	NSMCE1	SNP	Silent	16	27238139	G	A	35	54
BRCA	TCGA-BH-A0W7	XPO6	SNP	Silent	16	28109862	G	C	33	57
BRCA	TCGA-BH-A0W7	ZNF174	SNP	Silent	16	3452196	C	T	32	49
BRCA	TCGA-BH-A0W7	CREBBP	SNP	Missense_Mutation	16	3778745	G	C	45	50
BRCA	TCGA-BH-A0W7	COG8	SNP	Silent	16	69370510	G	A	45	46
BRCA	TCGA-BH-A0W7	HYDIN	SNP	Silent	16	70852401	G	A	45	62
BRCA	TCGA-BH-A0W7	MAP2K4	SNP	Nonsense_Mutation	17	12032510	C	T	29	98
BRCA	TCGA-BH-A0W7	NLK	SNP	Silent	17	26495572	G	A	45	67
BRCA	TCGA-BH-A0W7	TEFM	SNP	Silent	17	29226322	G	A	33	66
BRCA	TCGA-BH-A0W7	OR1A2	SNP	Missense_Mutation	17	3101617	G	C	33	67
BRCA	TCGA-BH-A0W7	KRTAP1-5	SNP	Missense_Mutation	17	39183074	C	T	17	37
BRCA	TCGA-BH-A0W7	JUP	SNP	Silent	17	39919445	C	G	29	68
BRCA	TCGA-BH-A0W7	NBR1	SNP	Missense_Mutation	17	41341611	G	A	33	94
BRCA	TCGA-BH-A0W7	HDAC5	SNP	Missense_Mutation	17	42164964	C	T	30	61
BRCA	TCGA-BH-A0W7	HSF5	SNP	Nonsense_Mutation	17	56540556	G	A	45	79
BRCA	TCGA-BH-A0W7	BCAS3	SNP	Missense_Mutation	17	59118217	G	A	33	97
BRCA	TCGA-BH-A0W7	UBE2O	SNP	Silent	17	74392693	C	T	29	54
BRCA	TCGA-BH-A0W7	TMC6	SNP	Silent	17	76116778	G	A	37	56
BRCA	TCGA-BH-A0W7	DNAH17	SNP	Missense_Mutation	17	76455115	C	T	32	85
BRCA	TCGA-BH-A0W7	DNAH2	SNP	Splice_Site	17	7671380	G	T	44	75
BRCA	TCGA-BH-A0W7	TCF4	SNP	Missense_Mutation	18	52896088	C	G	28	77
BRCA	TCGA-BH-A0W7	PPP4R1	SNP	Missense_Mutation	18	9588772	T	C	51	53
BRCA	TCGA-BH-A0W7	BEST2	SNP	Missense_Mutation	19	12864087	G	A	37	71
BRCA	TCGA-BH-A0W7	CD97	SNP	Missense_Mutation	19	14513553	C	T	32	75
BRCA	TCGA-BH-A0W7	OR7A17	SNP	Missense_Mutation	19	14991294	G	C	33	68
BRCA	TCGA-BH-A0W7	ZNF570	SNP	Missense_Mutation	19	37975503	G	A	33	80
BRCA	TCGA-BH-A0W7	PSG6	SNP	Silent	19	43420539	G	C	41	52
BRCA	TCGA-BH-A0W7	LMTK3	SNP	Silent	19	49001389	C	G	29	54
BRCA	TCGA-BH-A0W7	TFPT	SNP	Missense_Mutation	19	54610364	G	C	33	57
BRCA	TCGA-BH-A0W7	SHISA7	SNP	Silent	19	55949000	C	T	29	58
BRCA	TCGA-BH-A0W7	PTBP1	SNP	Missense_Mutation	19	810756	T	G	52	78
BRCA	TCGA-BH-A0W7	RFX8	SNP	Splice_site	2	102083311	G	C	45	57
BRCA	TCGA-BH-A0W7	TTN	SNP	Silent	2	179569097	C	G	29	58
BRCA	TCGA-BH-A0W7	ITGAV	SNP	Missense_Mutation	2	187487072	G	C	33	83
BRCA	TCGA-BH-A0W7	ANKAR	SNP	Missense_Mutation	2	190611197	C	G	29	75
BRCA	TCGA-BH-A0W7	RFTN2	SNP	Missense_Mutation	2	198495903	C	G	29	82
BRCA	TCGA-BH-A0W7	C2orf47	SNP	Missense_Mutation	2	200824060	G	C	33	97
BRCA	TCGA-BH-A0W7	ZFP36L2	SNP	Missense_Mutation	2	43452567	C	G	31	82
BRCA	TCGA-BH-A0W7	DYSF	SNP	Silent	2	71913616	C	T	29	60
BRCA	TCGA-BH-A0W7	LRRTM1	SNP	Silent	2	80530006	C	G	30	52
BRCA	TCGA-BH-A0W7	PCSK2	SNP	Missense_Mutation	20	17389950	C	T	30	95
BRCA	TCGA-BH-A0W7	RALGAPA2	SNP	Missense_Mutation	20	20484088	C	G	32	53
BRCA	TCGA-BH-A0W7	NFS1	SNP	Silent	20	34262522	G	A	33	53
BRCA	TCGA-BH-A0W7	DSN1	SNP	Silent	20	35395197	G	A	45	73
BRCA	TCGA-BH-A0W7	TRIB3	SNP	Missense_Mutation	20	368750	G	C	33	55
BRCA	TCGA-BH-A0W7	CSNK2A1	SNP	Missense_Mutation	20	480564	C	A	32	84
BRCA	TCGA-BH-A0W7	SPO11	SNP	Missense_Mutation	20	55909851	G	A	37	99
BRCA	TCGA-BH-A0W7	GRIK1	SNP	Nonsense_Mutation	21	30909633	G	C	45	83
BRCA	TCGA-BH-A0W7	IL10RB	SNP	Missense_Mutation	21	34668591	G	C	45	55
BRCA	TCGA-BH-A0W7	SON	SNP	Missense_Mutation	21	34932323	C	G	29	77
BRCA	TCGA-BH-A0W7	PISD	SNP	Silent	22	32019790	C	T	29	58
BRCA	TCGA-BH-A0W7	GPRASP1	SNP	Silent	23	101912816	C	T	32	35
BRCA	TCGA-BH-A0W7	NRK	SNP	Nonsense_Mutation	23	105156652	G	T	45	67
BRCA	TCGA-BH-A0W7	ATG4A	SNP	Missense_Mutation	23	107381127	C	G	32	59
BRCA	TCGA-BH-A0W7	TMEM27	SNP	Missense_Mutation	23	15646168	C	T	29	76
BRCA	TCGA-BH-A0W7	PDHA1	SNP	Missense_Mutation	23	19373844	G	A	35	47
BRCA	TCGA-BH-A0W7	UBA1	SNP	Missense_Mutation	23	47058918	G	A	37	81
BRCA	TCGA-BH-A0W7	WAS	SNP	Missense_Mutation	23	48547760	G	C	33	79
BRCA	TCGA-BH-A0W7	CACNA1F	SNP	Missense_Mutation	23	49075818	C	T	27	94
BRCA	TCGA-BH-A0W7	SSX8	SNP	Missense_Mutation	23	52657313	T	C	51	39
BRCA	TCGA-BH-A0W7	NHSL2	SNP	Missense_Mutation	23	71360031	C	T	26	76
BRCA	TCGA-BH-A0W7	MORC1	SNP	Missense_Mutation	3	108818304	C	G	29	90
BRCA	TCGA-BH-A0W7	C3orf52	SNP	Missense_Mutation	3	111805372	G	A	37	54
BRCA	TCGA-BH-A0W7	SIDT1	SNP	Silent	3	113325917	C	T	32	79
BRCA	TCGA-BH-A0W7	A4GNT	SNP	Silent	3	137843658	G	A	45	64
BRCA	TCGA-BH-A0W7	HPS3	SNP	Missense_Mutation	3	148858903	C	G	32	67
BRCA	TCGA-BH-A0W7	MED12L	SNP	Missense_Mutation	3	151107914	C	T	32	63
BRCA	TCGA-BH-A0W7	PIK3CA	SNP	Missense_Mutation	3	178938934	G	A	45	98
BRCA	TCGA-BH-A0W7	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A0W7	USP13	SNP	Splice_Site	3	179474867	G	T	40	80
BRCA	TCGA-BH-A0W7	TRANK1	SNP	Missense_Mutation	3	36873648	G	C	33	56
BRCA	TCGA-BH-A0W7	LARS2	SNP	Nonsense_Mutation	3	45561759	C	T	29	79
BRCA	TCGA-BH-A0W7	NBEAL2	SNP	Missense_Mutation	3	47047285	C	A	22	96
BRCA	TCGA-BH-A0W7	RBM6	SNP	Missense_Mutation	3	50091809	C	G	32	54
BRCA	TCGA-BH-A0W7	VPRBP	SNP	Nonsense_Mutation	3	51456160	G	C	45	100
BRCA	TCGA-BH-A0W7	DNAH1	SNP	Silent	3	52400784	G	A	45	60
BRCA	TCGA-BH-A0W7	PDE12	SNP	Silent	3	57543084	G	A	47	63
BRCA	TCGA-BH-A0W7	C3orf14	SNP	Missense_Mutation	3	62307654	G	A	45	53
BRCA	TCGA-BH-A0W7	SETD5	SNP	Missense_Mutation	3	9517426	C	G	32	62
BRCA	TCGA-BH-A0W7	FAM160A1	SNP	Missense_Mutation	4	152583754	G	A	45	59
BRCA	TCGA-BH-A0W7	TLR2	SNP	Silent	4	154626261	C	T	29	44
BRCA	TCGA-BH-A0W7	ADAM29	SNP	Nonsense_Mutation	4	175898316	C	G	29	50
BRCA	TCGA-BH-A0W7	ATP10D	SNP	Missense_Mutation	4	47559850	G	T	37	66
BRCA	TCGA-BH-A0W7	DMXL1	SNP	Missense_Mutation	5	118454657	G	C	33	56
BRCA	TCGA-BH-A0W7	MEGF10	SNP	Silent	5	126755761	C	T	29	71
BRCA	TCGA-BH-A0W7	SLC27A6	SNP	Silent	5	128326091	G	A	33	50
BRCA	TCGA-BH-A0W7	LOC100288105	DEL	Frame_Shift_Del	5	140242452	C	-	26	66
BRCA	TCGA-BH-A0W7	PCDHA12	SNP	Missense_Mutation	5	140256808	C	T	31	66
BRCA	TCGA-BH-A0W7	PCDHAC2	SNP	Silent	5	140347416	C	T	31	46
BRCA	TCGA-BH-A0W7	PCDHGB2	SNP	Nonsense_Mutation	5	140739809	C	G	29	100
BRCA	TCGA-BH-A0W7	NDST1	SNP	Silent	5	149921221	G	A	33	59
BRCA	TCGA-BH-A0W7	CYFIP2	SNP	Missense_Mutation	5	156746911	C	T	19	59
BRCA	TCGA-BH-A0W7	SH3PXD2B	SNP	Silent	5	171766111	G	A	45	54
BRCA	TCGA-BH-A0W7	TRIM41	SNP	Missense_Mutation	5	180651352	A	G	10	67
BRCA	TCGA-BH-A0W7	GOLPH3	SNP	Missense_Mutation	5	32126446	G	C	33	56
BRCA	TCGA-BH-A0W7	SLC30A5	SNP	Missense_Mutation	5	68414426	C	T	30	100
BRCA	TCGA-BH-A0W7	XRCC4	SNP	Missense_Mutation	5	82500653	G	C	45	51
BRCA	TCGA-BH-A0W7	QRSL1	SNP	Missense_Mutation	6	107096913	G	C	33	98
BRCA	TCGA-BH-A0W7	ARHGAP18	SNP	Silent	6	129939947	G	A	37	29
BRCA	TCGA-BH-A0W7	ARID1B	SNP	Missense_Mutation	6	157511206	G	C	33	99
BRCA	TCGA-BH-A0W7	TNFRSF21	SNP	Silent	6	47254254	G	A	44	70
BRCA	TCGA-BH-A0W7	MUC17	SNP	Missense_Mutation	7	100675920	C	G	32	64
BRCA	TCGA-BH-A0W7	TRPV6	SNP	Missense_Mutation	7	142571218	C	T	29	99
BRCA	TCGA-BH-A0W7	PAXIP1	SNP	Missense_Mutation	7	154754071	G	A	47	95
BRCA	TCGA-BH-A0W7	HECW1	SNP	Missense_Mutation	7	43532742	G	A	33	100
BRCA	TCGA-BH-A0W7	FIGNL1	SNP	Missense_Mutation	7	50513589	G	T	33	87
BRCA	TCGA-BH-A0W7	KRIT1	SNP	Splice_site	7	91855841	C	G	32	100
BRCA	TCGA-BH-A0W7	COL1A2	SNP	Missense_Mutation	7	94041910	C	G	31	40
BRCA	TCGA-BH-A0W7	TRRAP	SNP	Splice_site	7	98602971	G	A	35	98
BRCA	TCGA-BH-A0W7	PILRA	SNP	Silent	7	99987590	C	G	29	50
BRCA	TCGA-BH-A0W7	VPS13B	SNP	Silent	8	100732756	C	T	32	62
BRCA	TCGA-BH-A0W7	LONRF1	SNP	Missense_Mutation	8	12586696	C	T	29	97
BRCA	TCGA-BH-A0W7	CHRNB3	SNP	Missense_Mutation	8	42587035	C	G	32	54
BRCA	TCGA-BH-A0W7	RP1	SNP	Missense_Mutation	8	55538461	G	T	33	58
BRCA	TCGA-BH-A0W7	ALG2	SNP	Missense_Mutation	9	101980615	C	A	29	64
BRCA	TCGA-BH-A0W7	SVEP1	SNP	Missense_Mutation	9	113141752	C	G	31	100
BRCA	TCGA-BH-A0W7	SVEP1	SNP	Missense_Mutation	9	113169407	C	G	29	75
BRCA	TCGA-BH-A0W7	RC3H2	SNP	Silent	9	125642124	C	T	21	50
BRCA	TCGA-BH-A0W7	PNPLA7	SNP	Silent	9	140437118	C	A	26	53
BRCA	TCGA-BH-A0W7	RLN2	SNP	Missense_Mutation	9	5300346	C	T	29	52
BRCA	TCGA-BH-A0W7	PCSK5	SNP	Missense_Mutation	9	78638713	G	C	33	72
BRCA	TCGA-BH-A0W7	FAM75D1	SNP	Missense_Mutation	9	84609355	C	G	29	43
BRCA	TCGA-BH-A0WA	PRUNE	DEL	Splice_Site	1	151006280	A	-	15	79
BRCA	TCGA-BH-A0WA	SYT11	SNP	Missense_Mutation	1	155850298	T	A	50	67
BRCA	TCGA-BH-A0WA	RCOR3	SNP	Missense_Mutation	1	211486914	A	T	7	70
BRCA	TCGA-BH-A0WA	USH2A	SNP	Missense_Mutation	1	215847863	A	T	7	89
BRCA	TCGA-BH-A0WA	SZT2	DEL	Frame_Shift_Del	1	43902942	GATCC	-	45	58
BRCA	TCGA-BH-A0WA	FBXW4	DEL	Frame_Shift_Del	10	103432723	CA	-	21	69
BRCA	TCGA-BH-A0WA	ELOVL3	SNP	Missense_Mutation	10	103988761	G	C	42	98
BRCA	TCGA-BH-A0WA	WDR37	SNP	Silent	10	1123883	C	T	32	58
BRCA	TCGA-BH-A0WA	HSPA12A	SNP	Missense_Mutation	10	118439170	G	A	46	99
BRCA	TCGA-BH-A0WA	NET1	SNP	Missense_Mutation	10	5493833	C	T	19	83
BRCA	TCGA-BH-A0WA	DDX50	SNP	Missense_Mutation	10	70706250	C	T	29	66
BRCA	TCGA-BH-A0WA	MMRN2	DEL	In_Frame_Del	10	88702441	CTCCCGCGCCAGCCCGGC	-	28	56
BRCA	TCGA-BH-A0WA	SAAL1	SNP	Splice_Site	11	18124894	C	T	32	81
BRCA	TCGA-BH-A0WA	TNNT3	SNP	Splice_Site	11	1950349	G	A	33	54
BRCA	TCGA-BH-A0WA	AMBRA1	SNP	Missense_Mutation	11	46563919	T	G	59	58
BRCA	TCGA-BH-A0WA	NDUFV1	SNP	Missense_Mutation	11	67377047	G	A	38	93
BRCA	TCGA-BH-A0WA	FAT3	SNP	Missense_Mutation	11	92532859	C	G	24	80
BRCA	TCGA-BH-A0WA	PWP1	SNP	Silent	12	108086667	G	A	45	50
BRCA	TCGA-BH-A0WA	MSI1	SNP	Missense_Mutation	12	120791150	T	G	55	74
BRCA	TCGA-BH-A0WA	ETNK1	SNP	Missense_Mutation	12	22797179	A	G	14	31
BRCA	TCGA-BH-A0WA	NAV3	SNP	Missense_Mutation	12	78513062	T	A	53	81
BRCA	TCGA-BH-A0WA	WDHD1	SNP	Missense_Mutation	14	55408276	T	G	61	69
BRCA	TCGA-BH-A0WA	GSTZ1	SNP	Missense_Mutation	14	77793827	T	A	56	75
BRCA	TCGA-BH-A0WA	UBR7	SNP	Silent	14	93686633	T	C	51	52
BRCA	TCGA-BH-A0WA	C15orf55	SNP	Silent	15	34647278	G	A	33	54
BRCA	TCGA-BH-A0WA	SPG11	SNP	Missense_Mutation	15	44944117	G	A	45	53
BRCA	TCGA-BH-A0WA	EDC3	SNP	Missense_Mutation	15	74948230	T	C	50	88
BRCA	TCGA-BH-A0WA	GSPT1	SNP	Silent	16	12009404	C	T	22	44
BRCA	TCGA-BH-A0WA	AXIN1	SNP	Missense_Mutation	16	396580	A	G	4	92
BRCA	TCGA-BH-A0WA	BRCA1	SNP	Splice_Site	17	41223256	C	T	32	74
BRCA	TCGA-BH-A0WA	ADAM11	SNP	Missense_Mutation	17	42856604	G	A	41	90
BRCA	TCGA-BH-A0WA	TP53	SNP	Missense_Mutation	17	7577559	G	C	41	58
BRCA	TCGA-BH-A0WA	ESCO1	SNP	Missense_Mutation	18	19153877	T	C	52	66
BRCA	TCGA-BH-A0WA	ASXL3	SNP	Missense_Mutation	18	31319718	G	T	33	66
BRCA	TCGA-BH-A0WA	EPG5	SNP	Missense_Mutation	18	43534805	G	A	33	58
BRCA	TCGA-BH-A0WA	ARHGEF1	SNP	Missense_Mutation	19	42396123	G	T	43	50
BRCA	TCGA-BH-A0WA	LYPD5	SNP	Missense_Mutation	19	44303921	T	G	51	48
BRCA	TCGA-BH-A0WA	TRPM4	SNP	Silent	19	49692303	C	A	21	55
BRCA	TCGA-BH-A0WA	GCC2	DEL	Frame_Shift_Del	2	109098250	AATT	-	5	68
BRCA	TCGA-BH-A0WA	PCDP1	SNP	Silent	2	120362809	C	G	32	48
BRCA	TCGA-BH-A0WA	LCT	SNP	Missense_Mutation	2	136558268	C	A	26	100
BRCA	TCGA-BH-A0WA	ZNF804A	SNP	Silent	2	185803357	C	T	25	66
BRCA	TCGA-BH-A0WA	CCDC150	SNP	Splice_site	2	197565833	C	G	28	45
BRCA	TCGA-BH-A0WA	ALPP	SNP	Missense_Mutation	2	233244985	G	C	42	50
BRCA	TCGA-BH-A0WA	ALPPL2	SNP	Missense_Mutation	2	233273066	G	C	42	52
BRCA	TCGA-BH-A0WA	LGALSL	SNP	Silent	2	64683524	T	A	56	50
BRCA	TCGA-BH-A0WA	WISP2	SNP	Missense_Mutation	20	43348649	C	T	19	64
BRCA	TCGA-BH-A0WA	NCOA3	SNP	Missense_Mutation	20	46264187	C	G	26	79
BRCA	TCGA-BH-A0WA	DIDO1	SNP	Silent	20	61512736	T	G	59	49
BRCA	TCGA-BH-A0WA	MX2	SNP	Missense_Mutation	21	42749839	G	A	39	93
BRCA	TCGA-BH-A0WA	TRPM2	SNP	Missense_Mutation	21	45795833	G	A	44	80
BRCA	TCGA-BH-A0WA	TCF20	SNP	Missense_Mutation	22	42609210	G	A	33	87
BRCA	TCGA-BH-A0WA	ARMCX5	SNP	Missense_Mutation	23	101857506	C	G	20	45
BRCA	TCGA-BH-A0WA	GPRASP1	SNP	Missense_Mutation	23	101912281	G	A	48	63
BRCA	TCGA-BH-A0WA	FAM122B	SNP	Missense_Mutation	23	133906273	A	T	12	84
BRCA	TCGA-BH-A0WA	FHL1	SNP	Splice_Site	23	135288565	G	A	35	100
BRCA	TCGA-BH-A0WA	FMR1NB	SNP	Missense_Mutation	23	147088318	C	T	29	51
BRCA	TCGA-BH-A0WA	MAGEA12	SNP	Missense_Mutation	23	151900151	G	T	35	48
BRCA	TCGA-BH-A0WA	CXorf59	SNP	Missense_Mutation	23	36117974	A	G	12	74
BRCA	TCGA-BH-A0WA	SLC9A7	SNP	Missense_Mutation	23	46539151	G	A	42	98
BRCA	TCGA-BH-A0WA	GPR156	SNP	Missense_Mutation	3	119886036	C	G	17	93
BRCA	TCGA-BH-A0WA	ALDH1L1	SNP	Silent	3	125828902	G	A	39	53
BRCA	TCGA-BH-A0WA	STAG1	SNP	Silent	3	136096565	C	T	29	54
BRCA	TCGA-BH-A0WA	LXN	SNP	Missense_Mutation	3	158387342	C	T	25	84
BRCA	TCGA-BH-A0WA	ZNF619	SNP	Nonsense_Mutation	3	40528623	G	T	45	59
BRCA	TCGA-BH-A0WA	C3orf77	SNP	Missense_Mutation	3	44285812	G	A	43	59
BRCA	TCGA-BH-A0WA	LMOD3	SNP	Silent	3	69167916	C	G	21	56
BRCA	TCGA-BH-A0WA	CRELD1	SNP	Missense_Mutation	3	9976594	A	C	5	74
BRCA	TCGA-BH-A0WA	LPHN3	SNP	Missense_Mutation	4	62778445	A	T	1	67
BRCA	TCGA-BH-A0WA	TADA2B	SNP	Silent	4	7055893	C	T	23	37
BRCA	TCGA-BH-A0WA	FAM71B	SNP	Missense_Mutation	5	156590215	T	C	62	40
BRCA	TCGA-BH-A0WA	IL6ST	SNP	Missense_Mutation	5	55256367	G	C	41	72
BRCA	TCGA-BH-A0WA	TAS2R1	SNP	Missense_Mutation	5	9629727	T	G	50	36
BRCA	TCGA-BH-A0WA	GCM2	SNP	Missense_Mutation	6	10874470	G	C	41	60
BRCA	TCGA-BH-A0WA	ZNF318	SNP	Missense_Mutation	6	43316157	T	A	56	57
BRCA	TCGA-BH-A0WA	CYP2W1	SNP	Missense_Mutation	7	1024915	C	G	32	68
BRCA	TCGA-BH-A0WA	ABCB5	SNP	Missense_Mutation	7	20691242	C	G	24	96
BRCA	TCGA-BH-A0WA	LIMK1	SNP	Splice_site	7	73530288	G	A	39	92
BRCA	TCGA-BH-A0WA	NXPH1	SNP	Silent	7	8791150	C	T	21	69
BRCA	TCGA-BH-A0WA	LYNX1	SNP	Silent	8	143856611	G	A	35	74
BRCA	TCGA-BH-A0WA	PXDNL	SNP	Missense_Mutation	8	52339306	A	T	1	68
BRCA	TCGA-BH-A0WA	CHD7	SNP	Silent	8	61765545	G	C	46	68
BRCA	TCGA-BH-A0WA	RAD23B	SNP	Missense_Mutation	9	110086219	G	A	33	98
BRCA	TCGA-BH-A0WA	KIAA2026	SNP	Missense_Mutation	9	5920327	A	T	4	89
BRCA	TCGA-BH-A18F	EXOSC10	SNP	Silent	1	11147520	G	A	44	71
BRCA	TCGA-BH-A18F	MTMR11	SNP	Missense_Mutation	1	149901660	G	C	33	75
BRCA	TCGA-BH-A18F	RORC	SNP	Missense_Mutation	1	151787136	C	T	30	82
BRCA	TCGA-BH-A18F	PRRX1	SNP	Missense_Mutation	1	170688909	G	A	37	94
BRCA	TCGA-BH-A18F	ERO1LB	SNP	Missense_Mutation	1	236385305	T	A	52	55
BRCA	TCGA-BH-A18F	OR2G3	SNP	Missense_Mutation	1	247769804	C	T	31	50
BRCA	TCGA-BH-A18F	ATPAF1	SNP	Missense_Mutation	1	47130954	C	T	29	81
BRCA	TCGA-BH-A18F	TCERG1L	SNP	Silent	10	133106511	C	T	27	44
BRCA	TCGA-BH-A18F	PPP3CB	SNP	Missense_Mutation	10	75231327	C	T	28	100
BRCA	TCGA-BH-A18F	ANXA11	SNP	Missense_Mutation	10	81923292	G	C	45	93
BRCA	TCGA-BH-A18F	LRIT2	SNP	Silent	10	85984684	C	A	21	63
BRCA	TCGA-BH-A18F	APOA1	SNP	Silent	11	116706641	C	T	32	58
BRCA	TCGA-BH-A18F	USP47	SNP	Missense_Mutation	11	11977640	G	A	40	83
BRCA	TCGA-BH-A18F	POLR2G	SNP	Silent	11	62533187	G	A	33	65
BRCA	TCGA-BH-A18F	TSPAN11	SNP	Missense_Mutation	12	31136068	G	A	39	87
BRCA	TCGA-BH-A18F	COL2A1	SNP	Missense_Mutation	12	48381467	C	T	19	95
BRCA	TCGA-BH-A18F	KRT72	SNP	Missense_Mutation	12	52981502	C	T	19	77
BRCA	TCGA-BH-A18F	KIF5A	SNP	Missense_Mutation	12	57944160	G	A	35	72
BRCA	TCGA-BH-A18F	GDF3	SNP	Silent	12	7843251	C	T	32	50
BRCA	TCGA-BH-A18F	GPR97	SNP	Silent	16	57713121	C	T	27	34
BRCA	TCGA-BH-A18F	CES3	SNP	Silent	16	67006796	C	T	29	50
BRCA	TCGA-BH-A18F	CDH1	INS	Frame_Shift_Ins	16	68855935	-	CTGC	62	49
BRCA	TCGA-BH-A18F	NF1	DEL	Frame_Shift_Del	17	29562657	TGTT	-	55	89
BRCA	TCGA-BH-A18F	SOCS6	SNP	Missense_Mutation	18	67992128	G	T	44	100
BRCA	TCGA-BH-A18F	ZNF257	SNP	Missense_Mutation	19	22271888	C	A	24	56
BRCA	TCGA-BH-A18F	CEACAM3	SNP	Missense_Mutation	19	42301853	G	A	33	25
BRCA	TCGA-BH-A18F	POLR1B	SNP	Missense_Mutation	2	113308539	G	A	37	63
BRCA	TCGA-BH-A18F	CNTNAP5	SNP	Missense_Mutation	2	125281897	G	A	47	95
BRCA	TCGA-BH-A18F	NEB	SNP	Missense_Mutation	2	152384078	C	T	31	86
BRCA	TCGA-BH-A18F	INPP5D	SNP	Missense_Mutation	2	234094557	G	A	45	81
BRCA	TCGA-BH-A18F	NLRC4	SNP	Missense_Mutation	2	32476071	G	A	40	49
BRCA	TCGA-BH-A18F	XPO1	SNP	Missense_Mutation	2	61719472	C	T	31	100
BRCA	TCGA-BH-A18F	ZFP64	SNP	Silent	20	50701381	C	T	32	50
BRCA	TCGA-BH-A18F	TRPM2	SNP	Missense_Mutation	21	45826592	G	C	43	95
BRCA	TCGA-BH-A18F	H2BFM	SNP	Missense_Mutation	23	103268309	C	T	27	45
BRCA	TCGA-BH-A18F	ZCCHC16	SNP	Silent	23	111698859	G	A	39	52
BRCA	TCGA-BH-A18F	CUL4B	SNP	Missense_Mutation	23	119691821	C	A	32	69
BRCA	TCGA-BH-A18F	BEND2	SNP	Silent	23	18195777	G	A	33	61
BRCA	TCGA-BH-A18F	ARSE	SNP	Silent	23	2856150	C	T	24	46
BRCA	TCGA-BH-A18F	PAGE1	SNP	Missense_Mutation	23	49459371	C	G	21	48
BRCA	TCGA-BH-A18F	P2RY10	SNP	Missense_Mutation	23	78216027	C	T	24	56
BRCA	TCGA-BH-A18F	PIK3CA	SNP	Missense_Mutation	3	178936094	C	A	25	98
BRCA	TCGA-BH-A18F	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A18F	SCN5A	SNP	Silent	3	38593036	C	T	23	32
BRCA	TCGA-BH-A18F	GRK4	SNP	Silent	4	3040213	C	T	28	62
BRCA	TCGA-BH-A18F	SEC31A	INS	Frame_Shift_Ins	4	83763540	-	T	44	74
BRCA	TCGA-BH-A18F	C4A	SNP	Missense_Mutation	6	31962113	G	C	34	57
BRCA	TCGA-BH-A18F	KIFC1	SNP	Missense_Mutation	6	33371820	G	C	41	61
BRCA	TCGA-BH-A18F	HMGCLL1	SNP	Silent	6	55360322	T	C	64	42
BRCA	TCGA-BH-A18F	FLNC	SNP	Missense_Mutation	7	128490064	C	A	32	59
BRCA	TCGA-BH-A18F	FAM131B	SNP	Missense_Mutation	7	143057212	C	T	26	79
BRCA	TCGA-BH-A18F	CLIP2	SNP	Missense_Mutation	7	73790952	G	C	41	96
BRCA	TCGA-BH-A18F	GTF2IRD2	SNP	Nonsense_Mutation	7	74212296	G	A	47	49
BRCA	TCGA-BH-A18F	AP4M1	DEL	Frame_Shift_Del	7	99702544	CTTC	-	28	53
BRCA	TCGA-BH-A18F	VPS13B	SNP	Silent	8	100479736	T	C	60	55
BRCA	TCGA-BH-A18F	C8orf73	SNP	Missense_Mutation	8	144652216	C	T	31	79
BRCA	TCGA-BH-A18F	CNTLN	SNP	Missense_Mutation	9	17466866	G	C	33	73
BRCA	TCGA-BH-A18H	FCRL3	SNP	Silent	1	157650538	C	T	31	49
BRCA	TCGA-BH-A18H	SPEN	SNP	Nonsense_Mutation	1	16262615	C	T	25	81
BRCA	TCGA-BH-A18H	EMC1	SNP	Missense_Mutation	1	19559537	C	T	25	94
BRCA	TCGA-BH-A18H	SLC26A9	SNP	Missense_Mutation	1	205899028	T	C	51	60
BRCA	TCGA-BH-A18H	PRMT3	SNP	Missense_Mutation	11	20486016	G	A	46	93
BRCA	TCGA-BH-A18H	C11orf40	SNP	Missense_Mutation	11	4593466	G	C	33	55
BRCA	TCGA-BH-A18H	CCDC88B	SNP	Missense_Mutation	11	64111763	G	A	41	69
BRCA	TCGA-BH-A18H	RCE1	SNP	Silent	11	66613002	T	G	59	51
BRCA	TCGA-BH-A18H	KLHL35	SNP	Missense_Mutation	11	75133746	C	T	32	97
BRCA	TCGA-BH-A18H	PRCP	SNP	Missense_Mutation	11	82536048	G	A	42	64
BRCA	TCGA-BH-A18H	OR6C65	SNP	Silent	12	55794894	G	A	34	49
BRCA	TCGA-BH-A18H	A2M	SNP	Missense_Mutation	12	9230409	T	C	57	53
BRCA	TCGA-BH-A18H	SPRED1	SNP	Missense_Mutation	15	38614571	G	A	45	100
BRCA	TCGA-BH-A18H	NDUFAF1	DEL	Frame_Shift_Del	15	41687218	AA	-	13	71
BRCA	TCGA-BH-A18H	SECISBP2L	SNP	Silent	15	49309150	G	A	35	48
BRCA	TCGA-BH-A18H	ITGAX	SNP	Missense_Mutation	16	31393187	G	A	33	54
BRCA	TCGA-BH-A18H	TP53	SNP	Nonsense_Mutation	17	7576855	G	A	45	57
BRCA	TCGA-BH-A18H	LOC441806	SNP	Nonsense_Mutation	18	856809	G	T	45	74
BRCA	TCGA-BH-A18H	BIRC8	SNP	Missense_Mutation	19	53793366	C	G	29	55
BRCA	TCGA-BH-A18H	COL6A3	SNP	Silent	2	238303252	C	T	23	53
BRCA	TCGA-BH-A18H	LOC728470	SNP	Missense_Mutation	23	134326855	T	A	52	13
BRCA	TCGA-BH-A18H	SLC9A6	SNP	Silent	23	135126700	T	A	55	31
BRCA	TCGA-BH-A18H	DMD	SNP	Missense_Mutation	23	32717338	T	C	63	86
BRCA	TCGA-BH-A18H	PIK3CA	SNP	Missense_Mutation	3	178952054	G	A	41	100
BRCA	TCGA-BH-A18H	MAPKAPK3	SNP	Missense_Mutation	3	50679183	C	A	18	66
BRCA	TCGA-BH-A18H	CAMK1	SNP	Missense_Mutation	3	9803438	C	T	32	98
BRCA	TCGA-BH-A18H	FRAS1	SNP	Missense_Mutation	4	79396611	G	A	42	99
BRCA	TCGA-BH-A18H	ENOPH1	SNP	Missense_Mutation	4	83375938	C	G	32	57
BRCA	TCGA-BH-A18H	SHPRH	SNP	Missense_Mutation	6	146276233	C	G	20	41
BRCA	TCGA-BH-A18H	C9orf114	SNP	Missense_Mutation	9	131587316	C	T	29	94
BRCA	TCGA-BH-A18H	WNK2	SNP	Missense_Mutation	9	96051418	A	C	11	60
BRCA	TCGA-BH-A18I	IQGAP3	SNP	Silent	1	156499903	C	T	21	70
BRCA	TCGA-BH-A18I	GPN2	SNP	Missense_Mutation	1	27210723	A	T	9	91
BRCA	TCGA-BH-A18I	MRPL23	SNP	Missense_Mutation	11	1977619	G	A	39	69
BRCA	TCGA-BH-A18I	CAMKK2	SNP	Missense_Mutation	12	121712041	G	A	37	65
BRCA	TCGA-BH-A18I	UGGT2	SNP	Missense_Mutation	13	96529583	C	G	30	95
BRCA	TCGA-BH-A18I	ATP10A	SNP	Missense_Mutation	15	25947227	G	A	39	85
BRCA	TCGA-BH-A18I	MAP1A	SNP	Missense_Mutation	15	43814174	G	A	38	72
BRCA	TCGA-BH-A18I	MYO9A	SNP	Missense_Mutation	15	72192139	A	G	4	53
BRCA	TCGA-BH-A18I	NLRC3	SNP	Silent	16	3611738	C	T	25	53
BRCA	TCGA-BH-A18I	CEP192	SNP	Missense_Mutation	18	13059100	G	A	40	64
BRCA	TCGA-BH-A18I	POU2F2	SNP	Silent	19	42599576	G	A	39	35
BRCA	TCGA-BH-A18I	CNTNAP5	SNP	Missense_Mutation	2	125547610	A	T	7	63
BRCA	TCGA-BH-A18I	ARHGEF4	SNP	Missense_Mutation	2	131796570	G	A	37	89
BRCA	TCGA-BH-A18I	LCT	DEL	Frame_Shift_Del	2	136570313	A	-	15	92
BRCA	TCGA-BH-A18I	BCHE	SNP	Nonsense_Mutation	3	165504044	C	A	29	73
BRCA	TCGA-BH-A18I	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-BH-A18I	GAB1	SNP	Missense_Mutation	4	144360988	G	A	37	95
BRCA	TCGA-BH-A18I	PCDHGA1	SNP	Missense_Mutation	5	140710391	A	G	2	69
BRCA	TCGA-BH-A18I	PCDHGB6	SNP	Missense_Mutation	5	140788500	G	A	33	78
BRCA	TCGA-BH-A18I	GRK6	SNP	Missense_Mutation	5	176860631	C	T	27	100
BRCA	TCGA-BH-A18I	HACE1	SNP	Silent	6	105198288	G	A	45	58
BRCA	TCGA-BH-A18I	GLCCI1	SNP	Missense_Mutation	7	8099816	A	G	4	73
BRCA	TCGA-BH-A18I	HMBOX1	DEL	Frame_Shift_Del	8	28827654	A	-	13	76
BRCA	TCGA-BH-A18I	UBAP1	SNP	Silent	9	34241932	G	A	34	65
BRCA	TCGA-BH-A18J	C1orf31	SNP	Missense_Mutation	1	234519488	G	A	33	86
BRCA	TCGA-BH-A18J	RLF	SNP	Missense_Mutation	1	40703390	G	A	45	63
BRCA	TCGA-BH-A18J	NEXN	SNP	Missense_Mutation	1	78381798	G	A	45	82
BRCA	TCGA-BH-A18J	ATRNL1	SNP	Missense_Mutation	10	117075136	C	T	32	100
BRCA	TCGA-BH-A18J	SLC37A2	SNP	Missense_Mutation	11	124954753	G	C	41	54
BRCA	TCGA-BH-A18J	ANO5	SNP	Missense_Mutation	11	22271833	A	T	14	88
BRCA	TCGA-BH-A18J	NUP98	SNP	Silent	11	3707308	G	A	45	67
BRCA	TCGA-BH-A18J	DTX4	SNP	Silent	11	58949648	G	A	45	21
BRCA	TCGA-BH-A18J	SSH3	SNP	Missense_Mutation	11	67077640	G	C	45	61
BRCA	TCGA-BH-A18J	TRIM53	SNP	Missense_Mutation	11	89726904	G	A	37	48
BRCA	TCGA-BH-A18J	ABCD2	SNP	Nonsense_Mutation	12	39947821	G	A	45	100
BRCA	TCGA-BH-A18J	NELL2	SNP	Missense_Mutation	12	44914000	C	G	29	99
BRCA	TCGA-BH-A18J	MLL2	SNP	Missense_Mutation	12	49431434	C	G	32	56
BRCA	TCGA-BH-A18J	PAN2	SNP	Nonsense_Mutation	12	56718085	C	A	21	80
BRCA	TCGA-BH-A18J	COG3	SNP	Missense_Mutation	13	46050340	C	T	21	96
BRCA	TCGA-BH-A18J	MIA2	SNP	Missense_Mutation	14	39717240	C	G	29	46
BRCA	TCGA-BH-A18J	AGBL1	SNP	Silent	15	87531306	C	T	32	44
BRCA	TCGA-BH-A18J	NOXO1	SNP	Silent	16	2029831	C	T	23	37
BRCA	TCGA-BH-A18J	TBC1D24	SNP	Nonsense_Mutation	16	2548280	C	A	31	99
BRCA	TCGA-BH-A18J	RBFOX1	SNP	Missense_Mutation	16	7568188	C	A	29	94
BRCA	TCGA-BH-A18J	LOC645139	SNP	Missense_Mutation	17	18554458	G	T	33	76
BRCA	TCGA-BH-A18J	HLF	SNP	Silent	17	53342935	G	A	45	67
BRCA	TCGA-BH-A18J	BPTF	SNP	Silent	17	65909295	C	A	29	79
BRCA	TCGA-BH-A18J	ZNF750	SNP	Silent	17	80788525	C	T	29	73
BRCA	TCGA-BH-A18J	ASXL3	SNP	Missense_Mutation	18	31320321	G	A	45	81
BRCA	TCGA-BH-A18J	POLI	SNP	Missense_Mutation	18	51795967	C	G	19	51
BRCA	TCGA-BH-A18J	TCF4	SNP	Silent	18	52899811	C	T	31	46
BRCA	TCGA-BH-A18J	NPHS1	SNP	Missense_Mutation	19	36322218	G	A	38	53
BRCA	TCGA-BH-A18J	LIMS2	SNP	Missense_Mutation	2	128399741	C	A	24	60
BRCA	TCGA-BH-A18J	SCN1A	SNP	Missense_Mutation	2	166859083	C	T	29	69
BRCA	TCGA-BH-A18J	KBTBD10	SNP	Missense_Mutation	2	170366577	G	C	45	96
BRCA	TCGA-BH-A18J	MARS2	SNP	Silent	2	198570604	C	T	32	75
BRCA	TCGA-BH-A18J	EEF1B2	SNP	Missense_Mutation	2	207027604	C	G	32	65
BRCA	TCGA-BH-A18J	DNMT3A	SNP	Missense_Mutation	2	25471111	T	G	64	73
BRCA	TCGA-BH-A18J	PPP1R21	SNP	Nonsense_Mutation	2	48668100	C	A	31	75
BRCA	TCGA-BH-A18J	PLEK	SNP	Silent	2	68607462	G	C	41	44
BRCA	TCGA-BH-A18J	APLF	SNP	Missense_Mutation	2	68804999	G	A	45	83
BRCA	TCGA-BH-A18J	ODZ1	SNP	Missense_Mutation	23	123539084	C	G	32	96
BRCA	TCGA-BH-A18J	EIF1AX	SNP	Nonsense_Mutation	23	20148714	C	A	29	79
BRCA	TCGA-BH-A18J	C3orf30	SNP	Silent	3	118865111	C	T	26	43
BRCA	TCGA-BH-A18J	LRRIQ4	SNP	Missense_Mutation	3	169539890	G	A	45	69
BRCA	TCGA-BH-A18J	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-BH-A18J	IL17RC	SNP	Missense_Mutation	3	9959575	G	A	34	51
BRCA	TCGA-BH-A18J	ELMOD2	SNP	Missense_Mutation	4	141446688	G	A	45	71
BRCA	TCGA-BH-A18J	SLIT2	SNP	Silent	4	20541118	C	T	29	49
BRCA	TCGA-BH-A18J	BEND4	SNP	Missense_Mutation	4	42145827	C	G	32	64
BRCA	TCGA-BH-A18J	TSSK1B	SNP	Silent	5	112770420	C	T	31	41
BRCA	TCGA-BH-A18J	KCNN2	SNP	Missense_Mutation	5	113831863	C	T	29	96
BRCA	TCGA-BH-A18J	CDC25C	SNP	Silent	5	137621494	G	T	45	74
BRCA	TCGA-BH-A18J	MYO10	DEL	Frame_Shift_Del	5	16673826	TGCAGGAGCCGCCGCCA	-	63	77
BRCA	TCGA-BH-A18J	MAPK9	SNP	Silent	5	179676088	G	A	41	87
BRCA	TCGA-BH-A18J	NNT	SNP	Missense_Mutation	5	43644857	G	C	45	98
BRCA	TCGA-BH-A18J	RNF180	SNP	Missense_Mutation	5	63621163	C	A	32	72
BRCA	TCGA-BH-A18J	SEMA5A	SNP	Nonsense_Mutation	5	9154769	G	A	45	80
BRCA	TCGA-BH-A18J	RIOK2	SNP	Missense_Mutation	5	96503693	C	T	32	69
BRCA	TCGA-BH-A18J	BEND3	SNP	Missense_Mutation	6	107391941	C	A	19	46
BRCA	TCGA-BH-A18J	ROS1	SNP	Missense_Mutation	6	117622168	G	T	48	47
BRCA	TCGA-BH-A18J	NHLRC1	SNP	Missense_Mutation	6	18121699	A	G	7	88
BRCA	TCGA-BH-A18J	ZNF192	SNP	Missense_Mutation	6	28120897	A	T	7	69
BRCA	TCGA-BH-A18J	C6orf132	SNP	Missense_Mutation	6	42096493	G	A	37	68
BRCA	TCGA-BH-A18J	USP45	SNP	Missense_Mutation	6	99936655	C	T	29	80
BRCA	TCGA-BH-A18J	TNRC18	SNP	Missense_Mutation	7	5410036	C	G	30	93
BRCA	TCGA-BH-A18J	ZNF394	SNP	Missense_Mutation	7	99091324	C	T	27	53
BRCA	TCGA-BH-A18J	ENPP2	SNP	Missense_Mutation	8	120608116	G	A	45	84
BRCA	TCGA-BH-A18J	C9orf91	SNP	Missense_Mutation	9	117396146	G	C	33	66
BRCA	TCGA-BH-A18J	RANBP6	SNP	Missense_Mutation	9	6015273	C	G	28	75
BRCA	TCGA-BH-A18K	ITGA10	SNP	Silent	1	145539030	C	T	30	61
BRCA	TCGA-BH-A18K	SLC27A3	SNP	Silent	1	153747796	T	C	54	55
BRCA	TCGA-BH-A18K	SPTA1	SNP	Silent	1	158644209	G	A	36	53
BRCA	TCGA-BH-A18K	TIMM17A	SNP	Missense_Mutation	1	201924671	G	C	37	92
BRCA	TCGA-BH-A18K	HP1BP3	SNP	Splice_site	1	21097424	T	A	55	82
BRCA	TCGA-BH-A18K	RAP1GAP	SNP	Silent	1	21928254	G	A	38	51
BRCA	TCGA-BH-A18K	TTLL7	SNP	Missense_Mutation	1	84408343	C	T	21	80
BRCA	TCGA-BH-A18K	VPS26B	SNP	Silent	11	134114938	G	C	45	60
BRCA	TCGA-BH-A18K	LRP4	SNP	Missense_Mutation	11	46896381	T	C	49	93
BRCA	TCGA-BH-A18K	SLC22A25	SNP	Silent	11	62996780	G	A	35	56
BRCA	TCGA-BH-A18K	TYR	SNP	Missense_Mutation	11	88911241	C	G	27	8
BRCA	TCGA-BH-A18K	CPNE8	SNP	Missense_Mutation	12	39087515	G	C	33	64
BRCA	TCGA-BH-A18K	AKAP6	SNP	Missense_Mutation	14	33290671	G	C	41	97
BRCA	TCGA-BH-A18K	SETD1A	SNP	Silent	16	30977152	T	A	54	59
BRCA	TCGA-BH-A18K	MYO15A	SNP	Missense_Mutation	17	18065989	T	C	51	90
BRCA	TCGA-BH-A18K	GGNBP2	SNP	Silent	17	34937779	C	T	23	54
BRCA	TCGA-BH-A18K	ASB16	SNP	Silent	17	42255078	A	T	7	37
BRCA	TCGA-BH-A18K	SOX9	SNP	Nonsense_Mutation	17	70117908	C	T	21	81
BRCA	TCGA-BH-A18K	CYTH1	DEL	In_Frame_Del	17	76676295	CTT	-	24	72
BRCA	TCGA-BH-A18K	ZNF90	SNP	Missense_Mutation	19	20229605	A	G	14	25
BRCA	TCGA-BH-A18K	ZNF569	SNP	Missense_Mutation	19	37904255	C	G	32	55
BRCA	TCGA-BH-A18K	ZNF415	SNP	Silent	19	53611669	T	C	64	49
BRCA	TCGA-BH-A18K	NLRP2	SNP	Silent	19	55494011	C	T	23	36
BRCA	TCGA-BH-A18K	LOC646698	SNP	Missense_Mutation	19	56755692	T	A	50	52
BRCA	TCGA-BH-A18K	PLCD4	SNP	Silent	2	219492900	C	T	24	50
BRCA	TCGA-BH-A18K	LRRTM1	SNP	Silent	2	80530819	C	A	17	56
BRCA	TCGA-BH-A18K	PROM2	SNP	Silent	2	95944749	G	A	47	58
BRCA	TCGA-BH-A18K	SYS1	SNP	Missense_Mutation	20	43992225	G	T	33	93
BRCA	TCGA-BH-A18K	USP27X	SNP	Silent	23	49645295	C	T	28	84
BRCA	TCGA-BH-A18K	ATRX	SNP	Missense_Mutation	23	76940008	T	C	60	87
BRCA	TCGA-BH-A18K	CEP97	SNP	Missense_Mutation	3	101477254	G	A	45	94
BRCA	TCGA-BH-A18K	TOPBP1	SNP	Missense_Mutation	3	133337228	C	G	29	100
BRCA	TCGA-BH-A18K	CHRD	SNP	Missense_Mutation	3	184104637	G	A	37	85
BRCA	TCGA-BH-A18K	GOLGA4	SNP	Missense_Mutation	3	37356982	G	A	33	81
BRCA	TCGA-BH-A18K	FAM208A	SNP	Silent	3	56716828	G	A	45	67
BRCA	TCGA-BH-A18K	FLNB	SNP	Missense_Mutation	3	58134535	G	A	39	71
BRCA	TCGA-BH-A18K	CADPS	SNP	Missense_Mutation	3	62535703	A	C	7	90
BRCA	TCGA-BH-A18K	PPP4R2	SNP	Missense_Mutation	3	73096423	G	C	33	100
BRCA	TCGA-BH-A18K	LOC643446	SNP	Missense_Mutation	4	11374478	C	T	23	52
BRCA	TCGA-BH-A18K	ERVMER34-1	SNP	Missense_Mutation	4	53610409	C	G	30	50
BRCA	TCGA-BH-A18K	EPB41L4A	DEL	Frame_Shift_Del	5	111595650	T	-	53	50
BRCA	TCGA-BH-A18K	SEMA6A	DEL	In_Frame_Del	5	115823840	GAA	-	45	56
BRCA	TCGA-BH-A18K	PCDHA2	SNP	Missense_Mutation	5	140176351	C	T	29	66
BRCA	TCGA-BH-A18K	PIK3R1	INS	In_Frame_Ins	5	67591111	-	GAC	7	37
BRCA	TCGA-BH-A18K	ROS1	SNP	Missense_Mutation	6	117710620	G	A	41	58
BRCA	TCGA-BH-A18K	HFE	SNP	Missense_Mutation	6	26092916	C	T	24	55
BRCA	TCGA-BH-A18K	VWDE	SNP	Missense_Mutation	7	12401033	C	A	30	54
BRCA	TCGA-BH-A18K	FGFR1	SNP	Silent	8	38271457	G	A	37	33
BRCA	TCGA-BH-A18K	CPNE3	SNP	Missense_Mutation	8	87568396	A	G	16	80
BRCA	TCGA-BH-A18L	LOC100132108	SNP	Missense_Mutation	1	155815532	G	A	45	73
BRCA	TCGA-BH-A18L	CCDC19	SNP	Missense_Mutation	1	159846491	G	A	38	72
BRCA	TCGA-BH-A18L	C1orf222	SNP	Missense_Mutation	1	1902246	G	A	38	58
BRCA	TCGA-BH-A18L	AIDA	SNP	Nonsense_Mutation	1	222876531	G	A	47	86
BRCA	TCGA-BH-A18L	EIF3A	SNP	Missense_Mutation	10	120795555	C	T	19	100
BRCA	TCGA-BH-A18L	PLXDC2	SNP	Silent	10	20357104	G	T	45	58
BRCA	TCGA-BH-A18L	JMJD1C	SNP	Nonsense_Mutation	10	64974081	G	A	38	92
BRCA	TCGA-BH-A18L	RCOR2	SNP	Missense_Mutation	11	63683048	C	A	19	63
BRCA	TCGA-BH-A18L	MAML2	SNP	Missense_Mutation	11	96074719	G	A	38	52
BRCA	TCGA-BH-A18L	TMEM132D	SNP	Missense_Mutation	12	129559467	G	T	45	57
BRCA	TCGA-BH-A18L	OXGR1	SNP	Silent	13	97639726	G	A	38	30
BRCA	TCGA-BH-A18L	C14orf80	SNP	Missense_Mutation	14	105958575	C	G	23	50
BRCA	TCGA-BH-A18L	ACYP1	SNP	Missense_Mutation	14	75520314	G	A	39	59
BRCA	TCGA-BH-A18L	NEK9	SNP	Missense_Mutation	14	75551376	G	A	41	84
BRCA	TCGA-BH-A18L	ATG2B	SNP	Missense_Mutation	14	96792113	C	G	18	100
BRCA	TCGA-BH-A18L	PLIN1	SNP	Missense_Mutation	15	90212738	A	T	6	64
BRCA	TCGA-BH-A18L	FANCA	DEL	In_Frame_Del	16	89805935	GGA	-	39	51
BRCA	TCGA-BH-A18L	MYBBP1A	SNP	Missense_Mutation	17	4442756	C	T	20	51
BRCA	TCGA-BH-A18L	ALPK2	SNP	Silent	18	56203789	G	A	40	39
BRCA	TCGA-BH-A18L	CNOT3	SNP	Missense_Mutation	19	54647208	G	A	33	95
BRCA	TCGA-BH-A18L	MUC16	SNP	Silent	19	9062672	G	T	35	51
BRCA	TCGA-BH-A18L	FAM98A	SNP	Missense_Mutation	2	33809886	T	G	49	77
BRCA	TCGA-BH-A18L	ENSG00000181250	SNP	Silent	2	33952282	G	A	40	61
BRCA	TCGA-BH-A18L	CDH26	SNP	Missense_Mutation	20	58563973	G	C	33	35
BRCA	TCGA-BH-A18L	GRIK1	SNP	Missense_Mutation	21	30934056	C	T	27	99
BRCA	TCGA-BH-A18L	APOBEC3G	SNP	Missense_Mutation	22	39475005	G	A	40	47
BRCA	TCGA-BH-A18L	COL4A6	SNP	Silent	23	107412837	G	A	39	35
BRCA	TCGA-BH-A18L	ARHGAP36	SNP	Silent	23	130218365	A	G	4	37
BRCA	TCGA-BH-A18L	FAM127B	SNP	Silent	23	134185956	G	A	40	53
BRCA	TCGA-BH-A18L	KLHL4	SNP	Splice_Site	23	86872933	A	G	15	85
BRCA	TCGA-BH-A18L	MYRIP	SNP	Missense_Mutation	3	40192554	A	T	4	67
BRCA	TCGA-BH-A18L	DEFB131	SNP	Silent	4	9452156	T	C	51	58
BRCA	TCGA-BH-A18L	FER	SNP	Silent	5	108290582	T	C	64	54
BRCA	TCGA-BH-A18L	TRPC7	SNP	Silent	5	135587470	G	A	37	51
BRCA	TCGA-BH-A18L	ANKH	SNP	Missense_Mutation	5	14758638	G	A	40	99
BRCA	TCGA-BH-A18L	FAM169A	SNP	Nonsense_Mutation	5	74078857	C	A	32	70
BRCA	TCGA-BH-A18L	ZNF391	SNP	Missense_Mutation	6	27368399	C	G	22	48
BRCA	TCGA-BH-A18L	AKR1B1	SNP	Missense_Mutation	7	134135680	A	T	8	53
BRCA	TCGA-BH-A18L	MEOX2	SNP	Missense_Mutation	7	15652133	C	T	30	97
BRCA	TCGA-BH-A18L	PIWIL2	SNP	Missense_Mutation	8	22136963	G	A	48	52
BRCA	TCGA-BH-A18L	NEK6	SNP	Missense_Mutation	9	127089686	G	A	38	100
BRCA	TCGA-BH-A18L	ROR2	SNP	Missense_Mutation	9	94487328	C	T	23	64
BRCA	TCGA-BH-A18M	PGBD5	SNP	Silent	1	230492718	G	A	40	43
BRCA	TCGA-BH-A18M	KIF26B	SNP	Missense_Mutation	1	245849622	G	A	40	49
BRCA	TCGA-BH-A18M	ITGA8	SNP	Missense_Mutation	10	15634272	C	T	19	57
BRCA	TCGA-BH-A18M	GATA3	SNP	Missense_Mutation	10	8100382	A	T	3	70
BRCA	TCGA-BH-A18M	VWF	SNP	Splice_site	12	6091157	G	A	42	63
BRCA	TCGA-BH-A18M	SRGAP1	SNP	Missense_Mutation	12	64472859	G	A	33	85
BRCA	TCGA-BH-A18M	ENOX1	SNP	Missense_Mutation	13	43930084	T	C	62	89
BRCA	TCGA-BH-A18M	CEP152	SNP	Missense_Mutation	15	49060439	A	C	8	49
BRCA	TCGA-BH-A18M	LIG3	SNP	Missense_Mutation	17	33316500	C	G	32	69
BRCA	TCGA-BH-A18M	GLI2	SNP	Missense_Mutation	2	121747788	C	T	23	52
BRCA	TCGA-BH-A18M	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	TCGA-BH-A18M	CDH4	SNP	Silent	20	60498706	C	T	23	24
BRCA	TCGA-BH-A18M	TCEAL3	DEL	In_Frame_Del	23	102864406	GAT	-	33	69
BRCA	TCGA-BH-A18M	FAM123B	SNP	Missense_Mutation	23	63411027	G	C	45	64
BRCA	TCGA-BH-A18M	FBLN2	SNP	Missense_Mutation	3	13671349	C	T	23	99
BRCA	TCGA-BH-A18M	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A18M	CDCP1	DEL	Frame_Shift_Del	3	45127233	CT	-	20	58
BRCA	TCGA-BH-A18M	CDCP1	DEL	Frame_Shift_Del	3	45127239	GACTCAGG	-	33	86
BRCA	TCGA-BH-A18M	SLMAP	SNP	Silent	3	57843504	G	A	38	33
BRCA	TCGA-BH-A18M	ADH7	SNP	Missense_Mutation	4	100340221	G	A	41	61
BRCA	TCGA-BH-A18M	RAPGEF6	SNP	Missense_Mutation	5	130970657	C	T	31	75
BRCA	TCGA-BH-A18M	MAP3K1	SNP	Nonsense_Mutation	5	56178571	G	T	41	92
BRCA	TCGA-BH-A18M	MUC3A	SNP	Silent	7	100551180	C	T	23	52
BRCA	TCGA-BH-A18M	UNC5D	SNP	Missense_Mutation	8	35579891	C	A	29	73
BRCA	TCGA-BH-A18M	ST18	SNP	Silent	8	53050007	C	T	29	50
BRCA	TCGA-BH-A18N	PTCHD2	SNP	Missense_Mutation	1	11589972	G	A	40	48
BRCA	TCGA-BH-A18N	SLAMF7	SNP	Missense_Mutation	1	160720169	T	C	57	47
BRCA	TCGA-BH-A18N	C1orf86	SNP	Missense_Mutation	1	2125495	A	G	6	38
BRCA	TCGA-BH-A18N	PANK4	SNP	Missense_Mutation	1	2452259	T	C	55	66
BRCA	TCGA-BH-A18N	CUL5	SNP	Silent	11	107925435	A	G	8	53
BRCA	TCGA-BH-A18N	NAV2	SNP	Missense_Mutation	11	19955784	A	G	2	43
BRCA	TCGA-BH-A18N	CPT1A	SNP	Splice_site	11	68579905	G	A	38	61
BRCA	TCGA-BH-A18N	CLIP1	SNP	Missense_Mutation	12	122825568	A	G	8	80
BRCA	TCGA-BH-A18N	TESPA1	SNP	Missense_Mutation	12	55357565	G	A	38	80
BRCA	TCGA-BH-A18N	IFNG	SNP	Silent	12	68552013	A	G	16	50
BRCA	TCGA-BH-A18N	CLYBL	SNP	Missense_Mutation	13	100518497	C	G	25	96
BRCA	TCGA-BH-A18N	ZIC5	SNP	Silent	13	100617886	C	T	27	33
BRCA	TCGA-BH-A18N	MDGA2	SNP	Missense_Mutation	14	47389322	G	T	41	78
BRCA	TCGA-BH-A18N	CCP110	SNP	Missense_Mutation	16	19554266	C	A	31	86
BRCA	TCGA-BH-A18N	CDH8	SNP	Missense_Mutation	16	61689592	C	G	30	66
BRCA	TCGA-BH-A18N	PRKAR1A	SNP	Silent	17	66511561	C	T	23	54
BRCA	TCGA-BH-A18N	CD68	SNP	Missense_Mutation	17	7484092	C	G	21	49
BRCA	TCGA-BH-A18N	DCC	SNP	Silent	18	50432563	C	A	23	72
BRCA	TCGA-BH-A18N	ATP4A	SNP	Missense_Mutation	19	36051382	C	T	18	92
BRCA	TCGA-BH-A18N	SLC9A4	DEL	Frame_Shift_Del	2	103141501	T	-	49	54
BRCA	TCGA-BH-A18N	NT5C1B-RDH14	SNP	Missense_Mutation	2	18767558	A	T	12	58
BRCA	TCGA-BH-A18N	HECW2	SNP	Missense_Mutation	2	197171902	C	T	25	56
BRCA	TCGA-BH-A18N	ABCA12	SNP	Silent	2	215843723	G	A	39	34
BRCA	TCGA-BH-A18N	ZNF341	SNP	Missense_Mutation	20	32345105	C	T	19	54
BRCA	TCGA-BH-A18N	TMCO6	SNP	Missense_Mutation	5	140024286	T	G	60	55
BRCA	TCGA-BH-A18N	PCDHA1	SNP	Missense_Mutation	5	140167950	C	T	27	56
BRCA	TCGA-BH-A18N	PCDHGB6	SNP	Nonsense_Mutation	5	140789281	C	G	19	47
BRCA	TCGA-BH-A18N	MAP3K1	INS	Frame_Shift_Ins	5	56177058	-	GTCA	63	51
BRCA	TCGA-BH-A18N	MAP3K1	SNP	Nonsense_Mutation	5	56177978	C	G	29	86
BRCA	TCGA-BH-A18N	SYNE1	SNP	Missense_Mutation	6	152804248	G	A	40	60
BRCA	TCGA-BH-A18N	TULP4	SNP	Missense_Mutation	6	158922767	T	C	52	93
BRCA	TCGA-BH-A18N	GNMT	SNP	Silent	6	42931381	T	C	56	43
BRCA	TCGA-BH-A18N	MGAM	SNP	Missense_Mutation	7	141721528	A	G	4	52
BRCA	TCGA-BH-A18N	MLL3	DEL	Frame_Shift_Del	7	151845844	G	-	35	83
BRCA	TCGA-BH-A18N	NUP188	SNP	Silent	9	131757730	C	G	24	55
BRCA	TCGA-BH-A18N	IARS	SNP	Missense_Mutation	9	95013001	C	T	19	47
BRCA	TCGA-BH-A18P	FRRS1	SNP	Missense_Mutation	1	100185140	G	A	33	41
BRCA	TCGA-BH-A18P	LOC126987	SNP	Missense_Mutation	1	106623872	C	T	30	53
BRCA	TCGA-BH-A18P	GSTM3	SNP	Silent	1	110280959	C	T	32	64
BRCA	TCGA-BH-A18P	C1orf51	SNP	Missense_Mutation	1	150255964	G	C	33	58
BRCA	TCGA-BH-A18P	RUSC1	SNP	Silent	1	155294933	C	T	32	62
BRCA	TCGA-BH-A18P	NES	SNP	Silent	1	156640299	C	A	31	44
BRCA	TCGA-BH-A18P	RRNAD1	SNP	Splice_site	1	156699007	C	G	31	54
BRCA	TCGA-BH-A18P	CTRC	SNP	Missense_Mutation	1	15767045	G	C	45	53
BRCA	TCGA-BH-A18P	CD1D	SNP	Missense_Mutation	1	158152865	G	A	48	58
BRCA	TCGA-BH-A18P	CDK11A	SNP	Missense_Mutation	1	1647791	C	T	32	79
BRCA	TCGA-BH-A18P	NME7	SNP	Missense_Mutation	1	169102038	C	G	32	84
BRCA	TCGA-BH-A18P	ABL2	SNP	Silent	1	179095776	C	T	32	76
BRCA	TCGA-BH-A18P	TDRD5	SNP	Missense_Mutation	1	179632576	G	C	33	75
BRCA	TCGA-BH-A18P	ASPM	SNP	Missense_Mutation	1	197071299	G	A	41	67
BRCA	TCGA-BH-A18P	PTPRC	SNP	Missense_Mutation	1	198711494	G	A	33	100
BRCA	TCGA-BH-A18P	LRRN2	SNP	Missense_Mutation	1	204587427	C	T	23	45
BRCA	TCGA-BH-A18P	SLC41A1	SNP	Silent	1	205779276	G	A	37	50
BRCA	TCGA-BH-A18P	LAMB3	SNP	Missense_Mutation	1	209790817	C	T	32	63
BRCA	TCGA-BH-A18P	LUZP1	SNP	Missense_Mutation	1	23418627	C	T	32	55
BRCA	TCGA-BH-A18P	HCRTR1	SNP	Missense_Mutation	1	32090605	G	A	39	92
BRCA	TCGA-BH-A18P	PHC2	SNP	Missense_Mutation	1	33834190	C	G	17	70
BRCA	TCGA-BH-A18P	SZT2	SNP	Missense_Mutation	1	43892993	C	G	29	70
BRCA	TCGA-BH-A18P	GPR153	SNP	Silent	1	6313985	G	A	37	51
BRCA	TCGA-BH-A18P	CAMTA1	SNP	Silent	1	7309644	G	A	37	54
BRCA	TCGA-BH-A18P	AS3MT	SNP	Nonsense_Mutation	10	104638240	C	T	29	64
BRCA	TCGA-BH-A18P	NEBL	SNP	Missense_Mutation	10	21134276	C	G	29	86
BRCA	TCGA-BH-A18P	PDSS1	SNP	Missense_Mutation	10	26994296	G	C	45	66
BRCA	TCGA-BH-A18P	VSTM4	SNP	Silent	10	50227728	G	A	40	30
BRCA	TCGA-BH-A18P	FAM21A	SNP	Splice_site	10	51827768	G	A	47	67
BRCA	TCGA-BH-A18P	A1CF	SNP	Silent	10	52595937	G	A	37	44
BRCA	TCGA-BH-A18P	MRVI1	SNP	Missense_Mutation	11	10622555	G	C	33	69
BRCA	TCGA-BH-A18P	ACAT1	SNP	Missense_Mutation	11	108002665	C	T	29	66
BRCA	TCGA-BH-A18P	ZBTB44	SNP	Missense_Mutation	11	130131407	G	A	45	99
BRCA	TCGA-BH-A18P	C11orf58	SNP	Missense_Mutation	11	16776434	G	C	41	60
BRCA	TCGA-BH-A18P	WT1	SNP	Missense_Mutation	11	32414250	C	T	19	100
BRCA	TCGA-BH-A18P	PAMR1	SNP	Missense_Mutation	11	35515803	C	T	29	76
BRCA	TCGA-BH-A18P	ENSG00000181943	SNP	Missense_Mutation	11	55259086	G	A	48	43
BRCA	TCGA-BH-A18P	OR1S2	SNP	Missense_Mutation	11	57971065	G	C	33	53
BRCA	TCGA-BH-A18P	GLYATL1	SNP	Missense_Mutation	11	58714563	G	A	45	49
BRCA	TCGA-BH-A18P	ENSG00000180923	SNP	Missense_Mutation	11	6078656	G	C	45	59
BRCA	TCGA-BH-A18P	ENSG00000180923	SNP	Missense_Mutation	11	6078968	G	C	33	61
BRCA	TCGA-BH-A18P	ENSG00000180923	SNP	Silent	11	6079155	G	A	41	43
BRCA	TCGA-BH-A18P	VWCE	SNP	Missense_Mutation	11	61026446	G	C	33	74
BRCA	TCGA-BH-A18P	DNHD1	SNP	Silent	11	6541509	G	A	48	51
BRCA	TCGA-BH-A18P	ILK	SNP	Splice_Site	11	6631267	G	A	44	89
BRCA	TCGA-BH-A18P	ARAP1	SNP	Missense_Mutation	11	72409112	C	T	30	73
BRCA	TCGA-BH-A18P	PGM2L1	SNP	Silent	11	74062496	C	G	29	61
BRCA	TCGA-BH-A18P	SLC25A22	SNP	Missense_Mutation	11	792383	C	G	32	44
BRCA	TCGA-BH-A18P	CD151	SNP	Missense_Mutation	11	837971	C	A	29	75
BRCA	TCGA-BH-A18P	CCDC82	SNP	Missense_Mutation	11	96117522	T	A	61	44
BRCA	TCGA-BH-A18P	DEPDC4	SNP	Silent	12	100660753	C	G	29	52
BRCA	TCGA-BH-A18P	SLC17A8	SNP	Nonsense_Mutation	12	100813924	C	G	29	66
BRCA	TCGA-BH-A18P	GAS2L3	SNP	Silent	12	101018311	G	A	33	50
BRCA	TCGA-BH-A18P	TPCN1	SNP	Missense_Mutation	12	113704123	G	A	37	97
BRCA	TCGA-BH-A18P	CIT	SNP	Silent	12	120166328	G	A	45	65
BRCA	TCGA-BH-A18P	PUS1	SNP	Missense_Mutation	12	132426061	C	T	30	70
BRCA	TCGA-BH-A18P	HIST4H4	SNP	Silent	12	14923905	G	T	37	32
BRCA	TCGA-BH-A18P	DENND5B	SNP	Missense_Mutation	12	31545273	C	G	29	85
BRCA	TCGA-BH-A18P	C12orf40	SNP	Missense_Mutation	12	40041721	C	T	17	51
BRCA	TCGA-BH-A18P	SCAF11	SNP	Missense_Mutation	12	46321241	G	A	33	59
BRCA	TCGA-BH-A18P	RPAP3	SNP	Nonsense_Mutation	12	48062806	G	A	45	64
BRCA	TCGA-BH-A18P	DIP2B	SNP	Silent	12	51097988	G	T	47	61
BRCA	TCGA-BH-A18P	SCN8A	SNP	Missense_Mutation	12	52180367	G	A	45	100
BRCA	TCGA-BH-A18P	ERBB3	SNP	Missense_Mutation	12	56482607	C	T	18	85
BRCA	TCGA-BH-A18P	SLC39A5	SNP	Missense_Mutation	12	56626564	C	T	29	49
BRCA	TCGA-BH-A18P	LRP1	SNP	Missense_Mutation	12	57599437	C	T	19	61
BRCA	TCGA-BH-A18P	NOP2	SNP	Missense_Mutation	12	6677069	C	G	30	86
BRCA	TCGA-BH-A18P	NINJ2	SNP	Silent	12	675158	G	A	33	83
BRCA	TCGA-BH-A18P	FAM155A	SNP	Missense_Mutation	13	108518787	G	C	33	94
BRCA	TCGA-BH-A18P	TNFSF13B	SNP	Missense_Mutation	13	108922524	G	A	41	54
BRCA	TCGA-BH-A18P	ATP12A	SNP	Silent	13	25264553	C	T	29	60
BRCA	TCGA-BH-A18P	FLT1	SNP	Missense_Mutation	13	29005385	G	C	33	69
BRCA	TCGA-BH-A18P	SUGT1P3	SNP	Silent	13	41495642	G	A	33	54
BRCA	TCGA-BH-A18P	LRCH1	SNP	Missense_Mutation	13	47127578	C	T	31	55
BRCA	TCGA-BH-A18P	KPNA3	SNP	Missense_Mutation	13	50276031	C	T	29	100
BRCA	TCGA-BH-A18P	WDFY2	SNP	Silent	13	52325491	G	A	45	53
BRCA	TCGA-BH-A18P	TBC1D4	SNP	Missense_Mutation	13	75866384	C	T	29	97
BRCA	TCGA-BH-A18P	CDC42BPB	SNP	Missense_Mutation	14	103442325	C	T	29	78
BRCA	TCGA-BH-A18P	BRF1	SNP	Silent	14	105685609	C	T	31	37
BRCA	TCGA-BH-A18P	PARP2	SNP	Nonsense_Mutation	14	20824784	G	A	47	99
BRCA	TCGA-BH-A18P	RNASE11	SNP	Missense_Mutation	14	21052286	C	G	30	50
BRCA	TCGA-BH-A18P	METTL17	SNP	Missense_Mutation	14	21463019	G	A	45	67
BRCA	TCGA-BH-A18P	BCL2L2-PABPN1	SNP	Missense_Mutation	14	23791462	G	A	37	97
BRCA	TCGA-BH-A18P	FOXA1	SNP	Missense_Mutation	14	38061461	G	C	33	65
BRCA	TCGA-BH-A18P	KTN1	SNP	Missense_Mutation	14	56138368	G	C	33	97
BRCA	TCGA-BH-A18P	DHRS7	SNP	Silent	14	60616218	G	A	45	50
BRCA	TCGA-BH-A18P	HIF1A	SNP	Missense_Mutation	14	62207737	C	T	30	68
BRCA	TCGA-BH-A18P	PPP1R36	SNP	Missense_Mutation	14	65041213	G	A	45	63
BRCA	TCGA-BH-A18P	ADAM21	SNP	Missense_Mutation	14	70924304	C	G	29	48
BRCA	TCGA-BH-A18P	ADAM21	SNP	Silent	14	70924844	C	T	32	52
BRCA	TCGA-BH-A18P	MAP3K9	SNP	Missense_Mutation	14	71267708	C	T	30	61
BRCA	TCGA-BH-A18P	RBM25	SNP	Silent	14	73570127	A	G	11	59
BRCA	TCGA-BH-A18P	PSEN1	SNP	Missense_Mutation	14	73637628	G	A	45	100
BRCA	TCGA-BH-A18P	ACOT1	SNP	Missense_Mutation	14	74010102	G	A	45	55
BRCA	TCGA-BH-A18P	C14orf166B	SNP	Missense_Mutation	14	77304305	G	C	45	61
BRCA	TCGA-BH-A18P	INO80	DEL	Frame_Shift_Del	15	41384317	C	-	32	94
BRCA	TCGA-BH-A18P	RPAP1	SNP	Nonsense_Mutation	15	41821754	G	A	37	82
BRCA	TCGA-BH-A18P	LCMT2	SNP	Missense_Mutation	15	43621556	C	G	32	77
BRCA	TCGA-BH-A18P	LCMT2	SNP	Splice_Site	15	43621844	C	T	32	56
BRCA	TCGA-BH-A18P	LCMT2	SNP	Missense_Mutation	15	43622180	C	T	30	60
BRCA	TCGA-BH-A18P	DUOX1	SNP	Missense_Mutation	15	45440507	G	A	42	55
BRCA	TCGA-BH-A18P	UNC13C	SNP	Missense_Mutation	15	54307326	G	T	35	49
BRCA	TCGA-BH-A18P	GLCE	SNP	Missense_Mutation	15	69548380	C	G	29	94
BRCA	TCGA-BH-A18P	NEO1	SNP	Missense_Mutation	15	73428332	G	A	45	61
BRCA	TCGA-BH-A18P	NTAN1	SNP	Missense_Mutation	16	15135525	C	G	29	81
BRCA	TCGA-BH-A18P	KIAA0430	SNP	Silent	16	15728701	G	A	33	54
BRCA	TCGA-BH-A18P	CACNG3	SNP	Missense_Mutation	16	24372874	C	T	31	84
BRCA	TCGA-BH-A18P	CCDC101	SNP	Missense_Mutation	16	28602948	C	T	30	77
BRCA	TCGA-BH-A18P	SPN	SNP	Nonsense_Mutation	16	29675524	G	T	41	58
BRCA	TCGA-BH-A18P	DNAJA3	SNP	Nonsense_Mutation	16	4484516	C	T	29	82
BRCA	TCGA-BH-A18P	ADCY7	SNP	Missense_Mutation	16	50341017	C	G	32	47
BRCA	TCGA-BH-A18P	CHD9	SNP	Silent	16	53337714	G	A	41	49
BRCA	TCGA-BH-A18P	CCDC135	SNP	Silent	16	57760057	G	A	39	43
BRCA	TCGA-BH-A18P	CDH1	DEL	Frame_Shift_Del	16	68772257	A	-	11	60
BRCA	TCGA-BH-A18P	VAT1L	SNP	Silent	16	77859274	C	T	31	55
BRCA	TCGA-BH-A18P	FANCA	SNP	Silent	16	89809343	G	A	41	54
BRCA	TCGA-BH-A18P	ATAD5	SNP	Missense_Mutation	17	29221881	C	G	32	89
BRCA	TCGA-BH-A18P	RHOT1	SNP	Missense_Mutation	17	30500868	G	C	33	100
BRCA	TCGA-BH-A18P	RHOT1	SNP	Silent	17	30551656	C	G	29	83
BRCA	TCGA-BH-A18P	OR1A1	SNP	Silent	17	3119721	C	T	19	50
BRCA	TCGA-BH-A18P	LASP1	SNP	Missense_Mutation	17	37054741	G	A	33	82
BRCA	TCGA-BH-A18P	ERBB2	SNP	Missense_Mutation	17	37880220	T	C	63	90
BRCA	TCGA-BH-A18P	WIPF2	SNP	Missense_Mutation	17	38421179	C	A	30	97
BRCA	TCGA-BH-A18P	WIPF2	SNP	Missense_Mutation	17	38421273	C	G	32	97
BRCA	TCGA-BH-A18P	ZZEF1	SNP	Missense_Mutation	17	3981281	G	A	41	86
BRCA	TCGA-BH-A18P	LOC100131693	SNP	Missense_Mutation	17	47501653	G	C	36	65
BRCA	TCGA-BH-A18P	RNF43	SNP	Missense_Mutation	17	56435317	G	A	37	74
BRCA	TCGA-BH-A18P	RNF157	SNP	Missense_Mutation	17	74154505	G	A	33	76
BRCA	TCGA-BH-A18P	ST6GALNAC1	SNP	Missense_Mutation	17	74623561	C	G	32	61
BRCA	TCGA-BH-A18P	NARF	SNP	Missense_Mutation	17	80441612	G	A	41	81
BRCA	TCGA-BH-A18P	WDR45L	SNP	Nonsense_Mutation	17	80583301	G	A	45	94
BRCA	TCGA-BH-A18P	MPPE1	SNP	Silent	18	11886744	G	A	33	53
BRCA	TCGA-BH-A18P	ANKRD30B	SNP	Missense_Mutation	18	14850226	C	G	29	65
BRCA	TCGA-BH-A18P	ESCO1	SNP	Missense_Mutation	18	19146114	C	A	29	62
BRCA	TCGA-BH-A18P	FAM59A	SNP	Silent	18	29848311	C	T	32	68
BRCA	TCGA-BH-A18P	ME2	SNP	Missense_Mutation	18	48452266	G	C	33	63
BRCA	TCGA-BH-A18P	WDR7	SNP	Nonsense_Mutation	18	54606599	C	T	29	84
BRCA	TCGA-BH-A18P	ST8SIA3	SNP	Missense_Mutation	18	55020080	G	A	45	61
BRCA	TCGA-BH-A18P	DNM2	SNP	Silent	19	10870471	C	T	29	69
BRCA	TCGA-BH-A18P	FARSA	SNP	Missense_Mutation	19	13041152	C	G	30	75
BRCA	TCGA-BH-A18P	DNAJB1	SNP	Missense_Mutation	19	14629014	C	G	29	94
BRCA	TCGA-BH-A18P	RASAL3	SNP	Silent	19	15563564	G	T	37	49
BRCA	TCGA-BH-A18P	ATP8B3	SNP	Missense_Mutation	19	1783041	T	C	64	44
BRCA	TCGA-BH-A18P	ATP13A1	SNP	Missense_Mutation	19	19757018	C	T	31	52
BRCA	TCGA-BH-A18P	ZNF90	SNP	Missense_Mutation	19	20229984	G	C	33	65
BRCA	TCGA-BH-A18P	ZNF675	SNP	Missense_Mutation	19	23836556	C	G	32	79
BRCA	TCGA-BH-A18P	ZNF345	SNP	Missense_Mutation	19	37368413	G	C	33	63
BRCA	TCGA-BH-A18P	TJP3	SNP	Missense_Mutation	19	3750636	C	T	30	68
BRCA	TCGA-BH-A18P	ZNF585B	SNP	Missense_Mutation	19	37676695	C	G	29	64
BRCA	TCGA-BH-A18P	C19orf33	SNP	Missense_Mutation	19	38794918	G	A	41	47
BRCA	TCGA-BH-A18P	ANKRD24	SNP	Splice_Site	19	4186270	G	T	35	45
BRCA	TCGA-BH-A18P	TMIGD2	SNP	Silent	19	4292689	G	A	39	46
BRCA	TCGA-BH-A18P	STAP2	SNP	Silent	19	4325220	G	C	47	48
BRCA	TCGA-BH-A18P	ZNF230	SNP	Missense_Mutation	19	44512960	G	A	41	68
BRCA	TCGA-BH-A18P	PRKD2	SNP	Missense_Mutation	19	47201003	T	A	60	61
BRCA	TCGA-BH-A18P	LIG1	SNP	Silent	19	48643316	G	A	45	53
BRCA	TCGA-BH-A18P	ZNF613	SNP	Missense_Mutation	19	52448430	G	A	45	60
BRCA	TCGA-BH-A18P	ZNF415	SNP	Missense_Mutation	19	53612832	C	T	29	50
BRCA	TCGA-BH-A18P	PRKCG	SNP	Silent	19	54407909	C	T	19	49
BRCA	TCGA-BH-A18P	KIR2DL4	SNP	Missense_Mutation	19	55325488	G	C	45	55
BRCA	TCGA-BH-A18P	PEG3	SNP	Missense_Mutation	19	57325872	G	T	41	55
BRCA	TCGA-BH-A18P	PEG3	SNP	Silent	19	57327380	G	A	37	40
BRCA	TCGA-BH-A18P	ZNF135	SNP	Silent	19	58578710	C	T	30	58
BRCA	TCGA-BH-A18P	ZNF544	SNP	Silent	19	58773061	C	T	29	62
BRCA	TCGA-BH-A18P	MUC16	SNP	Missense_Mutation	19	9045834	C	T	32	70
BRCA	TCGA-BH-A18P	MUC16	SNP	Missense_Mutation	19	9075373	C	T	30	43
BRCA	TCGA-BH-A18P	MYO7B	SNP	Nonsense_Mutation	2	128389200	C	A	18	66
BRCA	TCGA-BH-A18P	LOC100288504	SNP	Silent	2	128410962	G	A	40	34
BRCA	TCGA-BH-A18P	GALNT5	SNP	Missense_Mutation	2	158142577	C	T	31	75
BRCA	TCGA-BH-A18P	PKP4	SNP	Silent	2	159537087	G	A	36	67
BRCA	TCGA-BH-A18P	MYCN	SNP	Splice_site	2	16082186	G	A	37	51
BRCA	TCGA-BH-A18P	FAP	SNP	Nonsense_Mutation	2	163044822	C	T	30	98
BRCA	TCGA-BH-A18P	XIRP2	SNP	Nonsense_Mutation	2	167760155	C	T	29	59
BRCA	TCGA-BH-A18P	TTN	SNP	Nonsense_Mutation	2	179483183	C	A	32	100
BRCA	TCGA-BH-A18P	TTN	SNP	Missense_Mutation	2	179483357	C	G	32	63
BRCA	TCGA-BH-A18P	TTN	SNP	Missense_Mutation	2	179613239	G	C	33	54
BRCA	TCGA-BH-A18P	TTN	SNP	Missense_Mutation	2	179640575	C	G	32	99
BRCA	TCGA-BH-A18P	GLS	SNP	Nonsense_Mutation	2	191760405	C	T	29	80
BRCA	TCGA-BH-A18P	NBEAL1	SNP	Missense_Mutation	2	203995183	G	C	33	69
BRCA	TCGA-BH-A18P	ZDBF2	SNP	Missense_Mutation	2	207170370	C	T	29	75
BRCA	TCGA-BH-A18P	APOB	SNP	Missense_Mutation	2	21242743	C	G	30	71
BRCA	TCGA-BH-A18P	ABCA12	SNP	Missense_Mutation	2	215815648	C	G	32	67
BRCA	TCGA-BH-A18P	SLC23A3	SNP	Missense_Mutation	2	220032957	G	A	45	60
BRCA	TCGA-BH-A18P	KCNJ13	SNP	Silent	2	233633333	G	C	33	53
BRCA	TCGA-BH-A18P	KLHL30	SNP	Splice_Site	2	239057647	G	A	33	81
BRCA	TCGA-BH-A18P	CAD	SNP	Nonsense_Mutation	2	27449092	C	T	29	71
BRCA	TCGA-BH-A18P	LRPPRC	SNP	Missense_Mutation	2	44202316	C	G	32	58
BRCA	TCGA-BH-A18P	FSHR	SNP	Missense_Mutation	2	49195939	T	C	60	60
BRCA	TCGA-BH-A18P	CCDC88A	SNP	Missense_Mutation	2	55591121	C	G	29	96
BRCA	TCGA-BH-A18P	VPS54	SNP	Missense_Mutation	2	64148438	C	G	32	96
BRCA	TCGA-BH-A18P	PROKR1	SNP	Silent	2	68873196	C	T	29	55
BRCA	TCGA-BH-A18P	ANXA4	SNP	Missense_Mutation	2	70033627	G	A	45	74
BRCA	TCGA-BH-A18P	POLR1A	SNP	Missense_Mutation	2	86258620	C	G	29	79
BRCA	TCGA-BH-A18P	MBOAT2	SNP	Missense_Mutation	2	9000774	G	C	33	84
BRCA	TCGA-BH-A18P	PYGB	SNP	Silent	20	25229006	C	T	31	70
BRCA	TCGA-BH-A18P	REM1	SNP	Missense_Mutation	20	30064441	G	A	45	50
BRCA	TCGA-BH-A18P	KIF3B	SNP	Silent	20	30898414	C	T	29	59
BRCA	TCGA-BH-A18P	RBM12	SNP	Missense_Mutation	20	34241075	G	A	41	70
BRCA	TCGA-BH-A18P	ATRN	SNP	Missense_Mutation	20	3541448	C	G	32	98
BRCA	TCGA-BH-A18P	RALGAPB	SNP	Missense_Mutation	20	37117154	G	A	33	85
BRCA	TCGA-BH-A18P	SGK2	SNP	Missense_Mutation	20	42195143	C	G	32	69
BRCA	TCGA-BH-A18P	WFDC11	SNP	Missense_Mutation	20	44279195	G	C	33	54
BRCA	TCGA-BH-A18P	CDH22	SNP	Missense_Mutation	20	44828148	G	T	38	59
BRCA	TCGA-BH-A18P	NTSR1	SNP	Silent	20	61340967	C	T	31	49
BRCA	TCGA-BH-A18P	URB1	SNP	Missense_Mutation	21	33732208	G	C	33	58
BRCA	TCGA-BH-A18P	DYRK1A	SNP	Missense_Mutation	21	38884772	G	C	45	99
BRCA	TCGA-BH-A18P	COL6A2	SNP	Silent	21	47549150	C	G	30	72
BRCA	TCGA-BH-A18P	TBC1D10A	SNP	Missense_Mutation	22	30722713	C	T	27	61
BRCA	TCGA-BH-A18P	CSF2RB	SNP	Nonsense_Mutation	22	37325762	C	T	23	67
BRCA	TCGA-BH-A18P	MLC1	SNP	Missense_Mutation	22	50512736	G	C	33	77
BRCA	TCGA-BH-A18P	NCAPH2	SNP	Missense_Mutation	22	50961305	G	A	38	71
BRCA	TCGA-BH-A18P	WWC3	SNP	Missense_Mutation	23	10102535	C	T	27	51
BRCA	TCGA-BH-A18P	GUCY2F	SNP	Silent	23	108638635	G	A	34	60
BRCA	TCGA-BH-A18P	NKAP	SNP	Nonsense_Mutation	23	119059227	G	A	37	59
BRCA	TCGA-BH-A18P	THOC2	SNP	Missense_Mutation	23	122771967	G	C	45	56
BRCA	TCGA-BH-A18P	ODZ1	SNP	Silent	23	123556288	C	T	31	45
BRCA	TCGA-BH-A18P	ODZ1	SNP	Missense_Mutation	23	123556368	G	A	40	77
BRCA	TCGA-BH-A18P	GPR112	SNP	Missense_Mutation	23	135427024	A	G	14	46
BRCA	TCGA-BH-A18P	FGF13	SNP	Missense_Mutation	23	137717749	G	A	45	85
BRCA	TCGA-BH-A18P	OFD1	SNP	Missense_Mutation	23	13778539	C	G	31	68
BRCA	TCGA-BH-A18P	SLC25A6	SNP	Silent	23	1508405	G	A	33	73
BRCA	TCGA-BH-A18P	ZFP92	SNP	Silent	23	152686582	C	T	31	53
BRCA	TCGA-BH-A18P	RPL10	SNP	Silent	23	153628919	G	C	45	77
BRCA	TCGA-BH-A18P	MBTPS2	SNP	Missense_Mutation	23	21900634	C	G	32	96
BRCA	TCGA-BH-A18P	CXorf22	SNP	Silent	23	35966471	C	G	29	48
BRCA	TCGA-BH-A18P	TSPAN7	SNP	Silent	23	38420832	G	A	45	70
BRCA	TCGA-BH-A18P	HUWE1	SNP	Missense_Mutation	23	53644041	C	A	31	93
BRCA	TCGA-BH-A18P	YIPF6	SNP	Missense_Mutation	23	67742612	C	G	29	91
BRCA	TCGA-BH-A18P	HDHD1	SNP	Silent	23	7023749	G	A	33	49
BRCA	TCGA-BH-A18P	BRWD3	SNP	Missense_Mutation	23	79978166	C	G	30	96
BRCA	TCGA-BH-A18P	POLQ	SNP	Nonsense_Mutation	3	121228970	G	A	45	53
BRCA	TCGA-BH-A18P	RBP1	SNP	Missense_Mutation	3	139244741	C	T	29	55
BRCA	TCGA-BH-A18P	RBP1	SNP	Missense_Mutation	3	139258551	G	A	41	70
BRCA	TCGA-BH-A18P	SLC25A36	SNP	Silent	3	140695209	C	T	32	76
BRCA	TCGA-BH-A18P	CPB1	SNP	Missense_Mutation	3	148559668	G	A	33	97
BRCA	TCGA-BH-A18P	TIPARP	SNP	Missense_Mutation	3	156422677	G	C	33	78
BRCA	TCGA-BH-A18P	SMC4	SNP	Missense_Mutation	3	160122246	G	A	37	100
BRCA	TCGA-BH-A18P	TBL1XR1	INS	Frame_Shift_Ins	3	176769295	-	TA	28	81
BRCA	TCGA-BH-A18P	PSMD2	SNP	Missense_Mutation	3	184019425	C	T	29	94
BRCA	TCGA-BH-A18P	FBXL2	SNP	Splice_Site	3	33420176	G	C	33	99
BRCA	TCGA-BH-A18P	SCN5A	SNP	Missense_Mutation	3	38627460	C	T	22	97
BRCA	TCGA-BH-A18P	FYCO1	SNP	Missense_Mutation	3	46007876	G	C	47	64
BRCA	TCGA-BH-A18P	CADPS	SNP	Missense_Mutation	3	62477092	C	G	32	100
BRCA	TCGA-BH-A18P	KIAA1109	SNP	Missense_Mutation	4	123201085	C	T	32	100
BRCA	TCGA-BH-A18P	PCDH18	SNP	Missense_Mutation	4	138451272	G	C	45	54
BRCA	TCGA-BH-A18P	SH3D19	SNP	Missense_Mutation	4	152056281	C	T	29	83
BRCA	TCGA-BH-A18P	KIAA0922	SNP	Missense_Mutation	4	154544085	G	C	41	86
BRCA	TCGA-BH-A18P	CTSO	SNP	Missense_Mutation	4	156849527	C	T	32	71
BRCA	TCGA-BH-A18P	ODZ3	SNP	Silent	4	183635307	G	A	48	45
BRCA	TCGA-BH-A18P	REST	SNP	Missense_Mutation	4	57796907	T	G	59	44
BRCA	TCGA-BH-A18P	EPHA5	SNP	Missense_Mutation	4	66231763	C	T	30	86
BRCA	TCGA-BH-A18P	UGT2B15	SNP	Missense_Mutation	4	69536210	G	T	35	62
BRCA	TCGA-BH-A18P	UGT2B11	SNP	Silent	4	70070294	G	A	41	49
BRCA	TCGA-BH-A18P	RCHY1	SNP	Missense_Mutation	4	76415808	G	C	45	77
BRCA	TCGA-BH-A18P	SDAD1	SNP	Missense_Mutation	4	76888470	G	C	33	62
BRCA	TCGA-BH-A18P	DMXL1	SNP	Silent	5	118464937	G	A	45	52
BRCA	TCGA-BH-A18P	DMXL1	SNP	Missense_Mutation	5	118582789	G	C	45	99
BRCA	TCGA-BH-A18P	DMXL1	SNP	Missense_Mutation	5	118582887	G	C	45	54
BRCA	TCGA-BH-A18P	ANKHD1	SNP	Missense_Mutation	5	139908070	C	G	32	81
BRCA	TCGA-BH-A18P	IK	SNP	Silent	5	140037204	G	T	45	58
BRCA	TCGA-BH-A18P	PCDHA9	SNP	Missense_Mutation	5	140229695	G	A	37	94
BRCA	TCGA-BH-A18P	SH3TC2	SNP	Nonsense_Mutation	5	148417943	G	A	45	70
BRCA	TCGA-BH-A18P	ATP10B	SNP	Silent	5	160059229	C	T	32	46
BRCA	TCGA-BH-A18P	MYO10	SNP	Silent	5	16670938	G	C	45	51
BRCA	TCGA-BH-A18P	RANBP17	SNP	Silent	5	170722917	G	A	45	56
BRCA	TCGA-BH-A18P	TSPAN17	SNP	Silent	5	176081937	C	G	29	67
BRCA	TCGA-BH-A18P	HNRNPH1	SNP	Silent	5	179044636	G	T	45	51
BRCA	TCGA-BH-A18P	ZFR	SNP	Silent	5	32364313	C	T	29	53
BRCA	TCGA-BH-A18P	CARD6	SNP	Nonsense_Mutation	5	40854270	C	T	29	63
BRCA	TCGA-BH-A18P	PLCXD3	SNP	Nonsense_Mutation	5	41382448	G	A	37	84
BRCA	TCGA-BH-A18P	MAP3K1	DEL	Frame_Shift_Del	5	56155605	C	-	30	74
BRCA	TCGA-BH-A18P	MAST4	SNP	Missense_Mutation	5	66084606	C	T	31	66
BRCA	TCGA-BH-A18P	PIK3R1	SNP	Missense_Mutation	5	67592087	G	A	45	100
BRCA	TCGA-BH-A18P	SLC30A5	SNP	Missense_Mutation	5	68410315	G	A	33	100
BRCA	TCGA-BH-A18P	REV3L	SNP	Missense_Mutation	6	111695851	C	G	18	54
BRCA	TCGA-BH-A18P	RSPH4A	SNP	Nonsense_Mutation	6	116938343	C	G	29	58
BRCA	TCGA-BH-A18P	DCBLD1	SNP	Missense_Mutation	6	117846569	C	T	32	52
BRCA	TCGA-BH-A18P	TAAR2	SNP	Missense_Mutation	6	132939037	C	G	32	77
BRCA	TCGA-BH-A18P	CD83	SNP	Silent	6	14131891	C	T	21	48
BRCA	TCGA-BH-A18P	STXBP5	SNP	Silent	6	147684754	G	C	40	27
BRCA	TCGA-BH-A18P	ULBP3	SNP	Missense_Mutation	6	150387087	C	G	32	20
BRCA	TCGA-BH-A18P	SYNE1	SNP	Silent	6	152650988	C	T	29	62
BRCA	TCGA-BH-A18P	FNDC1	SNP	Missense_Mutation	6	159653669	G	A	33	55
BRCA	TCGA-BH-A18P	MLLT4	SNP	Missense_Mutation	6	168307891	C	G	32	55
BRCA	TCGA-BH-A18P	KCTD20	SNP	Missense_Mutation	6	36447445	C	G	32	56
BRCA	TCGA-BH-A18P	FILIP1	SNP	Missense_Mutation	6	76024427	G	C	33	88
BRCA	TCGA-BH-A18P	MYO6	SNP	Missense_Mutation	6	76576321	G	C	42	100
BRCA	TCGA-BH-A18P	HTR1B	SNP	Silent	6	78172401	C	T	29	84
BRCA	TCGA-BH-A18P	MDN1	SNP	Missense_Mutation	6	90381945	C	T	29	95
BRCA	TCGA-BH-A18P	SLC26A5	SNP	Missense_Mutation	7	103020959	C	T	29	85
BRCA	TCGA-BH-A18P	NRCAM	SNP	Silent	7	107820851	C	T	32	39
BRCA	TCGA-BH-A18P	WASL	SNP	Splice_Site	7	123324635	C	G	32	96
BRCA	TCGA-BH-A18P	PLXNA4	SNP	Silent	7	132174147	G	A	45	71
BRCA	TCGA-BH-A18P	TRIM24	SNP	Silent	7	138210052	G	A	45	53
BRCA	TCGA-BH-A18P	HIPK2	SNP	Missense_Mutation	7	139288862	C	G	32	73
BRCA	TCGA-BH-A18P	MGAM	SNP	Silent	7	141705408	C	T	29	51
BRCA	TCGA-BH-A18P	MLL3	SNP	Missense_Mutation	7	151878971	C	G	32	100
BRCA	TCGA-BH-A18P	ESYT2	SNP	Missense_Mutation	7	158560422	G	C	33	60
BRCA	TCGA-BH-A18P	DNAH11	SNP	Missense_Mutation	7	21599382	G	C	33	50
BRCA	TCGA-BH-A18P	FKBP9	SNP	Silent	7	33035890	G	C	45	57
BRCA	TCGA-BH-A18P	UPP1	SNP	Missense_Mutation	7	48147085	C	G	25	64
BRCA	TCGA-BH-A18P	AUTS2	SNP	Silent	7	69064930	C	T	29	55
BRCA	TCGA-BH-A18P	AKAP9	SNP	Missense_Mutation	7	91709273	C	T	29	59
BRCA	TCGA-BH-A18P	CSMD3	SNP	Missense_Mutation	8	113364680	C	T	20	100
BRCA	TCGA-BH-A18P	ZNF623	SNP	Missense_Mutation	8	144732325	C	G	29	57
BRCA	TCGA-BH-A18P	ZNF623	SNP	Nonsense_Mutation	8	144732550	C	T	29	66
BRCA	TCGA-BH-A18P	HEATR7A	SNP	Silent	8	145246704	C	T	30	51
BRCA	TCGA-BH-A18P	ZNF34	SNP	Silent	8	145999827	C	T	29	64
BRCA	TCGA-BH-A18P	LOXL2	SNP	Silent	8	23177557	C	T	29	68
BRCA	TCGA-BH-A18P	KAT6A	SNP	Missense_Mutation	8	41798588	C	G	32	42
BRCA	TCGA-BH-A18P	NCOA2	SNP	Nonsense_Mutation	8	71069225	G	A	45	99
BRCA	TCGA-BH-A18P	ZNF704	SNP	Silent	8	81599539	G	A	39	51
BRCA	TCGA-BH-A18P	CPQ	SNP	Missense_Mutation	8	98041678	G	A	33	77
BRCA	TCGA-BH-A18P	ZNF618	SNP	Missense_Mutation	9	116811020	G	A	37	94
BRCA	TCGA-BH-A18P	TLR4	SNP	Nonsense_Mutation	9	120474783	C	G	29	54
BRCA	TCGA-BH-A18P	GOLGA2	SNP	Missense_Mutation	9	131023779	C	A	30	52
BRCA	TCGA-BH-A18P	ASB6	SNP	Missense_Mutation	9	132402823	C	T	29	81
BRCA	TCGA-BH-A18P	USP20	SNP	Silent	9	132637592	G	A	33	73
BRCA	TCGA-BH-A18P	KCNT1	SNP	Missense_Mutation	9	138678205	C	T	23	74
BRCA	TCGA-BH-A18P	C9orf131	SNP	Missense_Mutation	9	35043842	G	A	33	51
BRCA	TCGA-BH-A18P	FRMPD1	SNP	Silent	9	37692653	G	A	33	54
BRCA	TCGA-BH-A18P	ALDH1A1	SNP	Missense_Mutation	9	75516128	G	A	45	98
BRCA	TCGA-BH-A18Q	FLG	SNP	Silent	1	152283132	C	A	17	44
BRCA	TCGA-BH-A18Q	F5	SNP	Missense_Mutation	1	169511020	T	C	52	50
BRCA	TCGA-BH-A18Q	NCF2	SNP	Silent	1	183543637	C	G	31	59
BRCA	TCGA-BH-A18Q	HMCN1	SNP	Missense_Mutation	1	185815169	G	C	36	89
BRCA	TCGA-BH-A18Q	HMCN1	SNP	Missense_Mutation	1	186135346	G	T	46	100
BRCA	TCGA-BH-A18Q	LRRN2	SNP	Silent	1	204587204	G	C	41	60
BRCA	TCGA-BH-A18Q	MIA3	SNP	Missense_Mutation	1	222818914	G	C	45	94
BRCA	TCGA-BH-A18Q	ZBTB40	SNP	Nonsense_Mutation	1	22835081	C	G	29	72
BRCA	TCGA-BH-A18Q	OBSCN	SNP	Missense_Mutation	1	228559643	C	A	21	52
BRCA	TCGA-BH-A18Q	SLC18A2	SNP	Silent	10	119017348	G	A	34	66
BRCA	TCGA-BH-A18Q	MSS51	SNP	Missense_Mutation	10	75184874	G	A	48	92
BRCA	TCGA-BH-A18Q	DUPD1	SNP	Missense_Mutation	10	76797815	C	T	19	98
BRCA	TCGA-BH-A18Q	MARK2	SNP	Missense_Mutation	11	63665731	G	C	44	58
BRCA	TCGA-BH-A18Q	ALDH3B2	SNP	Missense_Mutation	11	67431876	G	T	48	59
BRCA	TCGA-BH-A18Q	ACER3	SNP	Missense_Mutation	11	76572075	G	T	41	76
BRCA	TCGA-BH-A18Q	ACACB	SNP	Missense_Mutation	12	109617839	C	A	17	98
BRCA	TCGA-BH-A18Q	SPPL3	SNP	Missense_Mutation	12	121248621	C	T	18	93
BRCA	TCGA-BH-A18Q	KCNH3	SNP	Silent	12	49951310	T	G	55	48
BRCA	TCGA-BH-A18Q	GPR84	SNP	Missense_Mutation	12	54756651	C	G	25	52
BRCA	TCGA-BH-A18Q	CD163	SNP	Missense_Mutation	12	7640285	G	C	42	57
BRCA	TCGA-BH-A18Q	LOC283398	SNP	Silent	12	94942076	C	T	22	59
BRCA	TCGA-BH-A18Q	UGGT2	SNP	Missense_Mutation	13	96536771	C	G	29	98
BRCA	TCGA-BH-A18Q	THBS1	SNP	Splice_site	15	39880727	T	A	58	93
BRCA	TCGA-BH-A18Q	EHD4	SNP	Silent	15	42192879	G	A	43	47
BRCA	TCGA-BH-A18Q	ABCC12	SNP	Silent	16	48173212	C	T	17	62
BRCA	TCGA-BH-A18Q	PMFBP1	SNP	Splice_site	16	72198814	G	A	38	42
BRCA	TCGA-BH-A18Q	ZNF778	SNP	Missense_Mutation	16	89293296	G	C	47	44
BRCA	TCGA-BH-A18Q	LOC100287244	DEL	Frame_Shift_Del	17	20908098	AGCCAATAGTGGAGCTGCG	-	7	46
BRCA	TCGA-BH-A18Q	LOC100287244	SNP	Silent	17	20908116	G	C	39	57
BRCA	TCGA-BH-A18Q	NFE2L1	SNP	Missense_Mutation	17	46136186	C	T	30	63
BRCA	TCGA-BH-A18Q	PHB	SNP	Missense_Mutation	17	47486378	C	G	24	51
BRCA	TCGA-BH-A18Q	AIPL1	SNP	Missense_Mutation	17	6337305	C	A	24	62
BRCA	TCGA-BH-A18Q	CASKIN2	SNP	Missense_Mutation	17	73502696	C	A	21	68
BRCA	TCGA-BH-A18Q	MGAT5B	DEL	Frame_Shift_Del	17	74900382	GTGGACGGCACCGA	-	44	89
BRCA	TCGA-BH-A18Q	TP53	INS	Frame_Shift_Ins	17	7579458	-	TGCA	44	47
BRCA	TCGA-BH-A18Q	DNAH17	SNP	Silent	17	76492022	G	A	45	55
BRCA	TCGA-BH-A18Q	SPIRE1	SNP	Missense_Mutation	18	12452354	T	C	49	77
BRCA	TCGA-BH-A18Q	SOCS6	SNP	Missense_Mutation	18	67992965	T	A	60	91
BRCA	TCGA-BH-A18Q	ATP9B	SNP	Missense_Mutation	18	77037109	G	C	33	97
BRCA	TCGA-BH-A18Q	EMR2	SNP	Missense_Mutation	19	14883280	C	G	20	44
BRCA	TCGA-BH-A18Q	SIN3B	DEL	Frame_Shift_Del	19	16982088	GGAGCCTGCT	-	39	85
BRCA	TCGA-BH-A18Q	SERTAD3	SNP	Missense_Mutation	19	40947491	G	A	42	73
BRCA	TCGA-BH-A18Q	ZFP28	SNP	Missense_Mutation	19	57066120	C	G	21	63
BRCA	TCGA-BH-A18Q	PEG3	SNP	Nonsense_Mutation	19	57286204	G	T	45	68
BRCA	TCGA-BH-A18Q	EDAR	SNP	Missense_Mutation	2	109513664	G	A	47	98
BRCA	TCGA-BH-A18Q	ACVR2A	SNP	Silent	2	148657335	T	G	53	51
BRCA	TCGA-BH-A18Q	DNAJC10	SNP	Missense_Mutation	2	183608386	C	T	23	95
BRCA	TCGA-BH-A18Q	INPP4A	SNP	Splice_Site	2	99189391	G	A	44	97
BRCA	TCGA-BH-A18Q	PAX1	SNP	Silent	20	21687302	C	A	27	40
BRCA	TCGA-BH-A18Q	CEP250	SNP	Silent	20	34054871	C	T	30	55
BRCA	TCGA-BH-A18Q	COL6A2	SNP	Missense_Mutation	21	47552440	G	A	37	96
BRCA	TCGA-BH-A18Q	CECR2	SNP	Missense_Mutation	22	18020472	C	A	18	67
BRCA	TCGA-BH-A18Q	PLXNB2	SNP	Silent	22	50717396	C	T	23	1
BRCA	TCGA-BH-A18Q	MCF2	SNP	Silent	23	138689912	C	T	32	54
BRCA	TCGA-BH-A18Q	FMR1	SNP	Missense_Mutation	23	147026507	C	T	19	49
BRCA	TCGA-BH-A18Q	ZBTB20	SNP	Missense_Mutation	3	114069805	T	G	56	88
BRCA	TCGA-BH-A18Q	SI	SNP	Missense_Mutation	3	164727132	C	G	32	59
BRCA	TCGA-BH-A18Q	CTNNB1	SNP	Silent	3	41266593	G	A	33	65
BRCA	TCGA-BH-A18Q	EPHA3	DEL	Frame_Shift_Del	3	89478293	TGGTTCCT	-	51	61
BRCA	TCGA-BH-A18Q	COL25A1	INS	Frame_Shift_Ins	4	109767306	-	T	41	84
BRCA	TCGA-BH-A18Q	LPHN3	SNP	Missense_Mutation	4	62936563	C	A	17	65
BRCA	TCGA-BH-A18Q	TADA2B	SNP	Missense_Mutation	4	7056404	C	G	27	82
BRCA	TCGA-BH-A18Q	SLCO6A1	SNP	Silent	5	101834402	C	T	18	43
BRCA	TCGA-BH-A18Q	LMNB1	SNP	Missense_Mutation	5	126146015	G	C	35	49
BRCA	TCGA-BH-A18Q	PCDHGA1	SNP	Silent	5	140712321	T	A	54	32
BRCA	TCGA-BH-A18Q	PPARGC1B	SNP	Missense_Mutation	5	149200117	A	C	2	49
BRCA	TCGA-BH-A18Q	HMGCS1	SNP	Silent	5	43298903	C	T	32	60
BRCA	TCGA-BH-A18Q	SLC38A9	SNP	Silent	5	54965418	T	C	51	53
BRCA	TCGA-BH-A18Q	MCHR2	SNP	Missense_Mutation	6	100368976	T	C	49	82
BRCA	TCGA-BH-A18Q	COL10A1	SNP	Missense_Mutation	6	116443059	G	A	43	69
BRCA	TCGA-BH-A18Q	DSE	SNP	Missense_Mutation	6	116720652	C	A	30	80
BRCA	TCGA-BH-A18Q	SAMD3	SNP	Nonsense_Mutation	6	130475973	A	C	12	54
BRCA	TCGA-BH-A18Q	AKAP12	SNP	Missense_Mutation	6	151674861	C	T	20	62
BRCA	TCGA-BH-A18Q	RGS17	SNP	Missense_Mutation	6	153332893	C	G	20	100
BRCA	TCGA-BH-A18Q	OPRM1	SNP	Missense_Mutation	6	154412258	A	G	9	94
BRCA	TCGA-BH-A18Q	TULP4	SNP	Splice_Site	6	158915879	G	T	44	100
BRCA	TCGA-BH-A18Q	KIF13A	SNP	Missense_Mutation	6	17856279	A	T	1	91
BRCA	TCGA-BH-A18Q	KIF13A	SNP	Missense_Mutation	6	17987307	A	G	9	48
BRCA	TCGA-BH-A18Q	BTN3A3	SNP	Missense_Mutation	6	26448491	G	C	34	53
BRCA	TCGA-BH-A18Q	C2	SNP	Splice_site	6	31895941	C	T	19	53
BRCA	TCGA-BH-A18Q	DAAM2	SNP	Missense_Mutation	6	39869637	C	A	24	53
BRCA	TCGA-BH-A18Q	F13A1	SNP	Missense_Mutation	6	6145994	G	T	43	69
BRCA	TCGA-BH-A18Q	MUC12	SNP	Missense_Mutation	7	100635586	A	T	6	47
BRCA	TCGA-BH-A18Q	AASS	DEL	Splice_Site	7	121721545	GTCACTCAC	-	36	62
BRCA	TCGA-BH-A18Q	UBE3C	SNP	Missense_Mutation	7	157016026	C	T	21	84
BRCA	TCGA-BH-A18Q	CBX3	SNP	Missense_Mutation	7	26248127	A	G	16	54
BRCA	TCGA-BH-A18Q	ASH2L	SNP	Missense_Mutation	8	37972459	C	A	22	99
BRCA	TCGA-BH-A18Q	ASPH	DEL	In_Frame_Del	8	62479849	CTC	-	32	75
BRCA	TCGA-BH-A18Q	RLN1	SNP	Missense_Mutation	9	5335559	T	C	49	37
BRCA	TCGA-BH-A18R	AMIGO1	SNP	Missense_Mutation	1	110050151	T	G	59	65
BRCA	TCGA-BH-A18R	POGK	SNP	Missense_Mutation	1	166819372	G	C	39	70
BRCA	TCGA-BH-A18R	CCDC18	DEL	Frame_Shift_Del	1	93701816	G	-	47	53
BRCA	TCGA-BH-A18R	DNAH10	SNP	Silent	12	124349244	C	A	30	49
BRCA	TCGA-BH-A18R	USPL1	SNP	Missense_Mutation	13	31205227	C	A	30	53
BRCA	TCGA-BH-A18R	FAM194B	SNP	Missense_Mutation	13	46124100	A	T	15	35
BRCA	TCGA-BH-A18R	RYR3	SNP	Silent	15	34113500	C	T	32	32
BRCA	TCGA-BH-A18R	LINC00273	SNP	Silent	16	33961669	G	T	39	52
BRCA	TCGA-BH-A18R	TOB1	SNP	Missense_Mutation	17	48941080	G	T	33	98
BRCA	TCGA-BH-A18R	ATCAY	SNP	Missense_Mutation	19	3909567	T	C	51	89
BRCA	TCGA-BH-A18R	PSG8	SNP	Missense_Mutation	19	43262178	C	G	29	60
BRCA	TCGA-BH-A18R	MUC16	SNP	Silent	19	9063011	C	T	25	48
BRCA	TCGA-BH-A18R	ACOXL	SNP	Missense_Mutation	2	111875316	T	A	64	58
BRCA	TCGA-BH-A18R	POLR1B	SNP	Silent	2	113317039	G	A	46	55
BRCA	TCGA-BH-A18R	BFSP1	SNP	Missense_Mutation	20	17474951	G	C	47	50
BRCA	TCGA-BH-A18R	TBL1XR1	INS	Frame_Shift_Ins	3	176769295	-	TA	28	81
BRCA	TCGA-BH-A18R	FAM107A	SNP	Missense_Mutation	3	58552971	C	G	28	62
BRCA	TCGA-BH-A18R	PITX2	SNP	Nonsense_Mutation	4	111539734	G	C	40	62
BRCA	TCGA-BH-A18R	SLC30A9	SNP	Missense_Mutation	4	42069113	C	G	31	100
BRCA	TCGA-BH-A18R	PCDHGB5	SNP	Missense_Mutation	5	140778016	G	A	42	56
BRCA	TCGA-BH-A18R	ADGB	SNP	Missense_Mutation	6	147123111	A	C	13	42
BRCA	TCGA-BH-A18R	AKAP12	SNP	Silent	6	151672994	G	A	35	60
BRCA	TCGA-BH-A18R	FLNC	SNP	Silent	7	128477752	C	T	19	45
BRCA	TCGA-BH-A18R	DGKI	SNP	Missense_Mutation	7	137374734	C	T	23	89
BRCA	TCGA-BH-A18R	ST6GALNAC4	SNP	Missense_Mutation	9	130670691	G	T	41	95
BRCA	TCGA-BH-A18R	ARHGEF39	SNP	Missense_Mutation	9	35664108	T	G	64	73
BRCA	TCGA-BH-A18R	RECK	SNP	Silent	9	36052308	T	C	51	51
BRCA	TCGA-BH-A18R	SPIN1	SNP	Missense_Mutation	9	91090014	G	C	35	98
BRCA	TCGA-BH-A18S	HCN3	SNP	Missense_Mutation	1	155252422	C	T	27	76
BRCA	TCGA-BH-A18S	ARHGEF2	SNP	Silent	1	155932874	C	T	21	46
BRCA	TCGA-BH-A18S	STK40	SNP	Missense_Mutation	1	36807418	C	T	31	80
BRCA	TCGA-BH-A18S	SLC35D1	SNP	Silent	1	67519643	C	A	31	56
BRCA	TCGA-BH-A18S	CCDC147	SNP	Silent	10	106153122	T	C	61	59
BRCA	TCGA-BH-A18S	TAOK3	SNP	Missense_Mutation	12	118619257	C	A	24	66
BRCA	TCGA-BH-A18S	ATF7IP	SNP	Missense_Mutation	12	14650900	G	A	47	88
BRCA	TCGA-BH-A18S	KRAS	DEL	In_Frame_Del	12	25362744	CTTTGT	-	20	83
BRCA	TCGA-BH-A18S	KCNH3	SNP	Missense_Mutation	12	49937716	G	A	40	97
BRCA	TCGA-BH-A18S	FBN1	SNP	Silent	15	48788403	C	A	29	57
BRCA	TCGA-BH-A18S	PLEKHG4	SNP	Missense_Mutation	16	67320712	C	T	27	62
BRCA	TCGA-BH-A18S	GIT1	SNP	Missense_Mutation	17	27909785	C	G	32	95
BRCA	TCGA-BH-A18S	CCDC57	SNP	Missense_Mutation	17	80159567	T	A	62	82
BRCA	TCGA-BH-A18S	MEX3C	SNP	Missense_Mutation	18	48703491	C	G	32	84
BRCA	TCGA-BH-A18S	ZNF407	SNP	Missense_Mutation	18	72346030	T	C	59	95
BRCA	TCGA-BH-A18S	ARRDC5	SNP	Silent	19	4891118	A	C	7	22
BRCA	TCGA-BH-A18S	C2orf65	SNP	Nonsense_Mutation	2	74803671	T	A	54	62
BRCA	TCGA-BH-A18S	RAF1	SNP	Missense_Mutation	3	12650791	T	C	50	61
BRCA	TCGA-BH-A18S	GABRG1	SNP	Missense_Mutation	4	46043235	G	T	41	96
BRCA	TCGA-BH-A18S	LAMA2	SNP	Missense_Mutation	6	129581882	C	T	28	87
BRCA	TCGA-BH-A18S	SYNE1	SNP	Missense_Mutation	6	152477160	G	A	46	100
BRCA	TCGA-BH-A18S	KIAA1586	SNP	Missense_Mutation	6	56918226	A	G	11	53
BRCA	TCGA-BH-A18S	MDN1	SNP	Silent	6	90410501	A	T	7	50
BRCA	TCGA-BH-A18S	BACH2	SNP	Missense_Mutation	6	90660902	T	G	54	88
BRCA	TCGA-BH-A18S	PTK2	SNP	Missense_Mutation	8	141900697	C	T	20	56
BRCA	TCGA-BH-A18S	LOC728683	SNP	Missense_Mutation	9	68372402	G	A	38	41
BRCA	TCGA-BH-A18T	DVL1	SNP	Missense_Mutation	1	1275510	G	A	39	79
BRCA	TCGA-BH-A18T	C1orf61	SNP	Splice_site	1	156384545	G	C	34	50
BRCA	TCGA-BH-A18T	MNDA	SNP	Silent	1	158813903	G	A	40	46
BRCA	TCGA-BH-A18T	HNRNPR	SNP	Silent	1	23637052	G	A	37	69
BRCA	TCGA-BH-A18T	ACTN2	SNP	Silent	1	236924431	C	G	23	44
BRCA	TCGA-BH-A18T	ACTN2	SNP	Missense_Mutation	1	236925789	G	A	39	100
BRCA	TCGA-BH-A18T	WDR65	SNP	Missense_Mutation	1	43675636	C	A	19	45
BRCA	TCGA-BH-A18T	AKR1CL1	SNP	Missense_Mutation	10	5227011	C	T	25	50
BRCA	TCGA-BH-A18T	PCDH15	SNP	Missense_Mutation	10	55582115	G	T	41	48
BRCA	TCGA-BH-A18T	ANK3	SNP	Missense_Mutation	10	61831032	C	A	18	97
BRCA	TCGA-BH-A18T	SIDT2	SNP	Missense_Mutation	11	117062673	C	A	27	40
BRCA	TCGA-BH-A18T	ROBO4	SNP	Missense_Mutation	11	124765517	C	A	30	72
BRCA	TCGA-BH-A18T	PDHX	SNP	Missense_Mutation	11	34981989	C	G	23	70
BRCA	TCGA-BH-A18T	OR5M11	SNP	Missense_Mutation	11	56310715	T	G	55	60
BRCA	TCGA-BH-A18T	FADS2	SNP	Missense_Mutation	11	61631214	C	G	29	80
BRCA	TCGA-BH-A18T	KSR2	SNP	Silent	12	117962668	G	A	47	50
BRCA	TCGA-BH-A18T	PIP4K2C	DEL	Frame_Shift_Del	12	57988969	C	-	30	49
BRCA	TCGA-BH-A18T	CD4	SNP	Missense_Mutation	12	6924071	C	G	28	32
BRCA	TCGA-BH-A18T	CD4	SNP	Silent	12	6925370	C	T	29	52
BRCA	TCGA-BH-A18T	CCT2	SNP	Missense_Mutation	12	69991764	G	C	45	80
BRCA	TCGA-BH-A18T	CAPS2	SNP	Missense_Mutation	12	75715242	C	T	25	44
BRCA	TCGA-BH-A18T	NUPL1	SNP	Missense_Mutation	13	25882072	G	A	41	84
BRCA	TCGA-BH-A18T	KATNAL1	SNP	Missense_Mutation	13	30854258	G	C	45	66
BRCA	TCGA-BH-A18T	FOXA1	SNP	Missense_Mutation	14	38061531	G	A	38	68
BRCA	TCGA-BH-A18T	MAGEL2	SNP	Silent	15	23890637	G	T	33	55
BRCA	TCGA-BH-A18T	LIPC	SNP	Missense_Mutation	15	58830595	G	C	33	48
BRCA	TCGA-BH-A18T	CSPG4	SNP	Missense_Mutation	15	75980944	A	G	9	90
BRCA	TCGA-BH-A18T	ADAMTSL3	SNP	Silent	15	84611369	G	T	42	24
BRCA	TCGA-BH-A18T	SSTR5	SNP	Silent	16	1129033	G	C	47	55
BRCA	TCGA-BH-A18T	UMOD	SNP	Missense_Mutation	16	20346808	G	C	34	54
BRCA	TCGA-BH-A18T	LYRM1	SNP	Silent	16	20931494	G	A	41	61
BRCA	TCGA-BH-A18T	CACNG3	SNP	Missense_Mutation	16	24372732	C	A	25	81
BRCA	TCGA-BH-A18T	OR3A2	SNP	Missense_Mutation	17	3181599	C	A	17	43
BRCA	TCGA-BH-A18T	STAT5B	SNP	Missense_Mutation	17	40364190	C	G	19	100
BRCA	TCGA-BH-A18T	ITGA3	SNP	Silent	17	48165666	G	A	40	42
BRCA	TCGA-BH-A18T	RPS6KB1	SNP	Silent	17	58011559	A	G	16	53
BRCA	TCGA-BH-A18T	TP53	SNP	Missense_Mutation	17	7579368	A	C	15	64
BRCA	TCGA-BH-A18T	COLEC12	SNP	Missense_Mutation	18	346546	G	A	40	85
BRCA	TCGA-BH-A18T	WDR7	SNP	Missense_Mutation	18	54362267	G	T	48	63
BRCA	TCGA-BH-A18T	ZCCHC2	SNP	Silent	18	60209735	A	T	14	55
BRCA	TCGA-BH-A18T	IL12RB1	SNP	Missense_Mutation	19	18173028	G	T	35	64
BRCA	TCGA-BH-A18T	LILRA1	SNP	Missense_Mutation	19	55107251	G	A	42	51
BRCA	TCGA-BH-A18T	TTN	SNP	Missense_Mutation	2	179416608	C	T	26	100
BRCA	TCGA-BH-A18T	APOB	SNP	Missense_Mutation	2	21229507	G	C	48	50
BRCA	TCGA-BH-A18T	SPTBN1	SNP	Missense_Mutation	2	54858364	G	C	35	59
BRCA	TCGA-BH-A18T	CCDC88A	SNP	Missense_Mutation	2	55561331	A	G	16	68
BRCA	TCGA-BH-A18T	CEP68	SNP	Silent	2	65298635	G	C	45	23
BRCA	TCGA-BH-A18T	RTKN	SNP	Missense_Mutation	2	74655820	G	C	39	71
BRCA	TCGA-BH-A18T	SNRNP200	SNP	Missense_Mutation	2	96943363	C	A	18	73
BRCA	TCGA-BH-A18T	MYH7B	SNP	Missense_Mutation	20	33586607	C	A	26	82
BRCA	TCGA-BH-A18T	SCAF4	SNP	Silent	21	33076192	A	G	5	57
BRCA	TCGA-BH-A18T	GPRASP2	SNP	Missense_Mutation	23	101972006	C	T	29	57
BRCA	TCGA-BH-A18T	KLHL13	SNP	Missense_Mutation	23	117033283	G	A	38	97
BRCA	TCGA-BH-A18T	ALAS2	SNP	Missense_Mutation	23	55052441	C	G	24	53
BRCA	TCGA-BH-A18T	DIRC2	SNP	Missense_Mutation	3	122545663	C	G	17	94
BRCA	TCGA-BH-A18T	RPN1	SNP	Missense_Mutation	3	128341012	C	G	31	97
BRCA	TCGA-BH-A18T	MECOM	SNP	Missense_Mutation	3	169099127	G	T	43	98
BRCA	TCGA-BH-A18T	CLASP2	SNP	Missense_Mutation	3	33580407	C	T	29	100
BRCA	TCGA-BH-A18T	STAB1	SNP	Silent	3	52548172	C	T	17	49
BRCA	TCGA-BH-A18T	CTNND2	SNP	Missense_Mutation	5	11022927	C	T	23	100
BRCA	TCGA-BH-A18T	PDE4D	SNP	Missense_Mutation	5	58273034	T	C	64	92
BRCA	TCGA-BH-A18T	NOX3	SNP	Silent	6	155750089	T	A	55	27
BRCA	TCGA-BH-A18T	KIF13A	SNP	Missense_Mutation	6	17799628	T	C	64	78
BRCA	TCGA-BH-A18T	ENPP4	SNP	Missense_Mutation	6	46111325	C	A	21	70
BRCA	TCGA-BH-A18T	LAMB1	SNP	Missense_Mutation	7	107580692	C	G	22	97
BRCA	TCGA-BH-A18T	ELMO1	SNP	Silent	7	36934509	G	A	41	55
BRCA	TCGA-BH-A18T	WBSCR27	SNP	Missense_Mutation	7	73249185	C	A	28	53
BRCA	TCGA-BH-A18T	PTPN12	SNP	Missense_Mutation	7	77200466	A	C	1	63
BRCA	TCGA-BH-A18T	NSMCE2	SNP	Missense_Mutation	8	126370005	G	C	33	82
BRCA	TCGA-BH-A18T	PRDM12	SNP	Missense_Mutation	9	133543691	G	C	35	54
BRCA	TCGA-BH-A18U	SHC1	SNP	Missense_Mutation	1	154938529	G	C	41	93
BRCA	TCGA-BH-A18U	TNN	SNP	Missense_Mutation	1	175096180	G	A	39	79
BRCA	TCGA-BH-A18U	FAM5B	SNP	Silent	1	177199234	C	T	29	57
BRCA	TCGA-BH-A18U	EPHB2	SNP	Silent	1	23111019	C	T	19	49
BRCA	TCGA-BH-A18U	RBM34	SNP	Nonsense_Mutation	1	235301419	G	A	46	56
BRCA	TCGA-BH-A18U	MKI67	SNP	Missense_Mutation	10	129913245	G	C	33	71
BRCA	TCGA-BH-A18U	SIRT1	SNP	Missense_Mutation	10	69672725	G	A	47	78
BRCA	TCGA-BH-A18U	KIF20B	SNP	Silent	10	91497970	G	A	45	48
BRCA	TCGA-BH-A18U	GRIA4	SNP	Missense_Mutation	11	105481745	G	C	33	66
BRCA	TCGA-BH-A18U	MLL	SNP	Silent	11	118375784	G	A	40	45
BRCA	TCGA-BH-A18U	GAL	SNP	Splice_Site	11	68458384	G	A	33	70
BRCA	TCGA-BH-A18U	MRE11A	SNP	Missense_Mutation	11	94192723	C	G	32	100
BRCA	TCGA-BH-A18U	ERP29	SNP	Missense_Mutation	12	112457615	G	A	44	86
BRCA	TCGA-BH-A18U	SRRM4	SNP	Silent	12	119419693	G	A	37	48
BRCA	TCGA-BH-A18U	DNAH10	SNP	Silent	12	124377793	G	A	38	38
BRCA	TCGA-BH-A18U	POLE	SNP	Silent	12	133220066	G	C	34	65
BRCA	TCGA-BH-A18U	GOLGA3	SNP	Nonsense_Mutation	12	133351861	C	A	30	86
BRCA	TCGA-BH-A18U	NR4A1	SNP	Silent	12	52448796	G	A	39	24
BRCA	TCGA-BH-A18U	VWF	SNP	Silent	12	6091108	C	T	27	12
BRCA	TCGA-BH-A18U	CAND1	SNP	Missense_Mutation	12	67686481	G	A	45	99
BRCA	TCGA-BH-A18U	ZFC3H1	SNP	Silent	12	72013172	A	G	9	55
BRCA	TCGA-BH-A18U	FAM155A	SNP	Missense_Mutation	13	107822931	G	C	34	80
BRCA	TCGA-BH-A18U	MCF2L	SNP	Splice_Site	13	113699676	G	T	36	72
BRCA	TCGA-BH-A18U	SACS	SNP	Silent	13	23905513	G	A	33	78
BRCA	TCGA-BH-A18U	MTUS2	SNP	Missense_Mutation	13	29600997	C	T	23	86
BRCA	TCGA-BH-A18U	KIAA0391	SNP	Missense_Mutation	14	35742701	G	A	45	100
BRCA	TCGA-BH-A18U	ATG2B	SNP	Silent	14	96809459	T	G	55	55
BRCA	TCGA-BH-A18U	FAM98B	SNP	Missense_Mutation	15	38757568	C	T	31	69
BRCA	TCGA-BH-A18U	CES5A	SNP	Silent	16	55907861	C	T	29	58
BRCA	TCGA-BH-A18U	FAM192A	SNP	Missense_Mutation	16	57188374	G	A	43	88
BRCA	TCGA-BH-A18U	TMCO7	DEL	Frame_Shift_Del	16	68943146	AG	-	7	56
BRCA	TCGA-BH-A18U	ZZEF1	SNP	Missense_Mutation	17	3961435	G	C	42	95
BRCA	TCGA-BH-A18U	ZFP3	SNP	Nonsense_Mutation	17	4996237	C	T	21	53
BRCA	TCGA-BH-A18U	MED13	SNP	Missense_Mutation	17	60040309	C	G	30	97
BRCA	TCGA-BH-A18U	TP53	DEL	Frame_Shift_Del	17	7577067	TGCGGAGATTCTCTTCCTC	-	63	86
BRCA	TCGA-BH-A18U	TP53	SNP	Missense_Mutation	17	7577082	C	T	30	80
BRCA	TCGA-BH-A18U	WDR7	SNP	Silent	18	54350050	C	T	28	64
BRCA	TCGA-BH-A18U	LGALS4	SNP	Silent	19	39292707	G	A	42	63
BRCA	TCGA-BH-A18U	CYP2S1	SNP	Missense_Mutation	19	41707218	C	T	19	88
BRCA	TCGA-BH-A18U	FCGRT	SNP	Silent	19	50017360	C	T	32	52
BRCA	TCGA-BH-A18U	TUBB4A	SNP	Silent	19	6495820	C	T	23	45
BRCA	TCGA-BH-A18U	C3	SNP	Silent	19	6718310	G	A	38	43
BRCA	TCGA-BH-A18U	KCNH7	SNP	Missense_Mutation	2	163291915	C	A	29	84
BRCA	TCGA-BH-A18U	KBTBD10	SNP	Missense_Mutation	2	170366479	C	G	32	96
BRCA	TCGA-BH-A18U	NRP2	SNP	Missense_Mutation	2	206608200	G	A	38	75
BRCA	TCGA-BH-A18U	NRBP1	SNP	Missense_Mutation	2	27663559	G	C	45	83
BRCA	TCGA-BH-A18U	C2orf71	SNP	Silent	2	29296696	T	C	52	45
BRCA	TCGA-BH-A18U	PLCG1	SNP	Missense_Mutation	20	39793935	G	T	45	50
BRCA	TCGA-BH-A18U	ZNF217	SNP	Missense_Mutation	20	52198134	G	A	33	80
BRCA	TCGA-BH-A18U	DNAJC5	SNP	Missense_Mutation	20	62560669	C	T	28	71
BRCA	TCGA-BH-A18U	LCA5L	SNP	Nonsense_Mutation	21	40795105	G	A	46	58
BRCA	TCGA-BH-A18U	PI4KA	SNP	Silent	22	21096566	G	A	35	65
BRCA	TCGA-BH-A18U	ASCC2	SNP	Silent	22	30197090	T	C	60	58
BRCA	TCGA-BH-A18U	EP300	SNP	Silent	22	41489026	G	A	47	90
BRCA	TCGA-BH-A18U	SREBF2	SNP	Missense_Mutation	22	42271676	C	G	32	87
BRCA	TCGA-BH-A18U	CERK	DEL	In_Frame_Del	22	47095261	TGA	-	63	67
BRCA	TCGA-BH-A18U	RGAG1	SNP	Missense_Mutation	23	109695584	T	C	51	48
BRCA	TCGA-BH-A18U	FLNA	SNP	Missense_Mutation	23	153580968	G	A	45	99
BRCA	TCGA-BH-A18U	CLCN5	SNP	Silent	23	49853534	C	G	24	52
BRCA	TCGA-BH-A18U	SPANXN5	SNP	Missense_Mutation	23	52825543	C	G	32	52
BRCA	TCGA-BH-A18U	TSPYL2	SNP	Missense_Mutation	23	53113974	T	C	51	69
BRCA	TCGA-BH-A18U	FOXO4	SNP	Missense_Mutation	23	70320750	G	A	37	76
BRCA	TCGA-BH-A18U	ATRX	SNP	Missense_Mutation	23	76938781	G	A	41	81
BRCA	TCGA-BH-A18U	PCDH11X	SNP	Silent	23	91134233	G	T	45	57
BRCA	TCGA-BH-A18U	GPR143	SNP	Missense_Mutation	23	9714090	T	A	58	48
BRCA	TCGA-BH-A18U	IRAK2	SNP	Missense_Mutation	3	10251290	G	A	34	50
BRCA	TCGA-BH-A18U	STAG1	SNP	Silent	3	136062775	T	C	59	47
BRCA	TCGA-BH-A18U	STAG1	SNP	Missense_Mutation	3	136076644	C	G	32	87
BRCA	TCGA-BH-A18U	EIF4G1	SNP	Missense_Mutation	3	184035137	C	T	23	80
BRCA	TCGA-BH-A18U	MON1A	SNP	Missense_Mutation	3	49947969	G	A	41	100
BRCA	TCGA-BH-A18U	LRTM1	SNP	Silent	3	54959016	G	A	35	67
BRCA	TCGA-BH-A18U	PAPSS1	SNP	Missense_Mutation	4	108578129	C	T	18	100
BRCA	TCGA-BH-A18U	NR3C2	SNP	Silent	4	149075853	G	A	39	44
BRCA	TCGA-BH-A18U	CCDC111	SNP	Missense_Mutation	4	185606574	G	C	45	73
BRCA	TCGA-BH-A18U	KDR	SNP	Silent	4	55973912	G	A	40	56
BRCA	TCGA-BH-A18U	SPARCL1	SNP	Missense_Mutation	4	88415533	A	G	1	54
BRCA	TCGA-BH-A18U	CTNNA1	SNP	Missense_Mutation	5	138260325	C	T	29	86
BRCA	TCGA-BH-A18U	PCDHB1	SNP	Silent	5	140433272	C	T	18	54
BRCA	TCGA-BH-A18U	PCDHB6	SNP	Missense_Mutation	5	140530673	G	A	38	49
BRCA	TCGA-BH-A18U	MYO10	SNP	Silent	5	16711286	C	T	29	57
BRCA	TCGA-BH-A18U	RAB3C	SNP	Missense_Mutation	5	58021869	C	A	26	100
BRCA	TCGA-BH-A18U	GJA10	SNP	Nonsense_Mutation	6	90604284	C	T	23	85
BRCA	TCGA-BH-A18U	CFTR	SNP	Missense_Mutation	7	117306992	G	T	37	98
BRCA	TCGA-BH-A18U	SMARCD3	SNP	Missense_Mutation	7	150937577	T	C	54	87
BRCA	TCGA-BH-A18U	WBSCR17	SNP	Nonsense_Mutation	7	70886058	G	A	47	95
BRCA	TCGA-BH-A18U	ZNF3	SNP	Missense_Mutation	7	99662436	C	T	20	65
BRCA	TCGA-BH-A18U	CYP7B1	DEL	Frame_Shift_Del	8	65509394	A	-	5	60
BRCA	TCGA-BH-A18U	DAB2IP	SNP	Missense_Mutation	9	124528856	G	A	39	96
BRCA	TCGA-BH-A18U	CBWD1	SNP	Missense_Mutation	9	156515	C	G	32	77
BRCA	TCGA-BH-A18U	BNC2	SNP	Missense_Mutation	9	16436220	C	T	29	100
BRCA	TCGA-BH-A18U	CEP78	SNP	Missense_Mutation	9	80880403	G	A	45	63
BRCA	TCGA-BH-A18U	DAPK1	SNP	Missense_Mutation	9	90322160	T	A	64	51
BRCA	TCGA-BH-A18V	ACAP3	SNP	Missense_Mutation	1	1229567	C	T	19	56
BRCA	TCGA-BH-A18V	FLG	SNP	Missense_Mutation	1	152279371	C	T	28	52
BRCA	TCGA-BH-A18V	UBE2Q1	SNP	Silent	1	154524921	G	A	37	33
BRCA	TCGA-BH-A18V	FCER1A	SNP	Missense_Mutation	1	159273955	A	T	14	51
BRCA	TCGA-BH-A18V	SLAMF6	SNP	Missense_Mutation	1	160461134	G	C	45	51
BRCA	TCGA-BH-A18V	GPA33	SNP	Silent	1	167038307	G	A	45	50
BRCA	TCGA-BH-A18V	TIPRL	SNP	Silent	1	168160639	A	G	1	66
BRCA	TCGA-BH-A18V	F5	SNP	Silent	1	169509636	A	G	7	46
BRCA	TCGA-BH-A18V	SCCPDH	SNP	Missense_Mutation	1	246890259	G	C	45	97
BRCA	TCGA-BH-A18V	COL16A1	SNP	Silent	1	32131199	G	T	34	50
BRCA	TCGA-BH-A18V	FNDC5	SNP	Silent	1	33333876	G	A	33	72
BRCA	TCGA-BH-A18V	CPT2	SNP	Missense_Mutation	1	53675880	G	C	45	53
BRCA	TCGA-BH-A18V	GPR153	SNP	Missense_Mutation	1	6311508	G	C	42	98
BRCA	TCGA-BH-A18V	CAMTA1	SNP	Missense_Mutation	1	7805917	C	G	19	41
BRCA	TCGA-BH-A18V	SSX2IP	SNP	Silent	1	85130215	G	A	45	48
BRCA	TCGA-BH-A18V	LZTS2	SNP	Missense_Mutation	10	102762473	G	A	41	93
BRCA	TCGA-BH-A18V	MCM10	SNP	Silent	10	13251286	T	A	53	52
BRCA	TCGA-BH-A18V	ANKRD30A	SNP	Missense_Mutation	10	37508523	A	G	4	45
BRCA	TCGA-BH-A18V	SGMS1	SNP	Silent	10	52103557	C	A	30	50
BRCA	TCGA-BH-A18V	ARID5B	DEL	Frame_Shift_Del	10	63661995	AAGA	-	5	59
BRCA	TCGA-BH-A18V	STAMBPL1	SNP	Missense_Mutation	10	90661472	C	A	29	70
BRCA	TCGA-BH-A18V	CYP2C8	SNP	Missense_Mutation	10	96829054	G	A	33	54
BRCA	TCGA-BH-A18V	R3HCC1L	SNP	Missense_Mutation	10	99994243	G	A	46	89
BRCA	TCGA-BH-A18V	FLI1	SNP	Missense_Mutation	11	128638063	G	A	41	76
BRCA	TCGA-BH-A18V	BARX2	SNP	Nonsense_Mutation	11	129306882	G	T	37	96
BRCA	TCGA-BH-A18V	KCNA4	SNP	Missense_Mutation	11	30034200	T	C	54	74
BRCA	TCGA-BH-A18V	MYBPC3	DEL	Frame_Shift_Del	11	47364566	GCCCACCTTTCACAAAGAGCTCCGTGCTACA	-	42	52
BRCA	TCGA-BH-A18V	TRIM49B	SNP	Silent	11	49059214	G	T	43	40
BRCA	TCGA-BH-A18V	OR56A4	DEL	Frame_Shift_Del	11	6023829	GATGGCA	-	41	78
BRCA	TCGA-BH-A18V	CARNS1	SNP	Missense_Mutation	11	67191270	G	T	44	81
BRCA	TCGA-BH-A18V	FAM86C1	SNP	Silent	11	71507236	C	T	26	50
BRCA	TCGA-BH-A18V	MYO7A	SNP	Missense_Mutation	11	76895641	G	C	33	63
BRCA	TCGA-BH-A18V	UTP20	SNP	Missense_Mutation	12	101757468	G	C	39	100
BRCA	TCGA-BH-A18V	CLEC9A	SNP	Splice_Site	12	10205227	A	T	3	57
BRCA	TCGA-BH-A18V	EP400NL	SNP	Missense_Mutation	12	132589226	G	A	43	74
BRCA	TCGA-BH-A18V	STRAP	SNP	Missense_Mutation	12	16055855	A	T	1	50
BRCA	TCGA-BH-A18V	PLEKHA5	SNP	Missense_Mutation	12	19500091	G	C	41	72
BRCA	TCGA-BH-A18V	PDE3A	SNP	Missense_Mutation	12	20799535	C	T	29	81
BRCA	TCGA-BH-A18V	RECQL	SNP	Missense_Mutation	12	21624426	G	A	41	81
BRCA	TCGA-BH-A18V	ETNK1	SNP	Silent	12	22796922	G	A	41	84
BRCA	TCGA-BH-A18V	CSRNP2	SNP	Missense_Mutation	12	51457830	G	C	47	82
BRCA	TCGA-BH-A18V	MYO1A	SNP	Missense_Mutation	12	57423998	G	C	47	57
BRCA	TCGA-BH-A18V	NALCN	SNP	Missense_Mutation	13	101748002	A	T	8	74
BRCA	TCGA-BH-A18V	MTUS2	SNP	Silent	13	29600959	C	G	32	56
BRCA	TCGA-BH-A18V	FRY	SNP	Missense_Mutation	13	32729667	G	C	45	100
BRCA	TCGA-BH-A18V	MAB21L1	SNP	Missense_Mutation	13	36049917	G	C	41	100
BRCA	TCGA-BH-A18V	MTRF1	SNP	Missense_Mutation	13	41834948	C	G	32	55
BRCA	TCGA-BH-A18V	HTR2A	SNP	Silent	13	47409443	G	A	45	70
BRCA	TCGA-BH-A18V	KLHL1	SNP	Missense_Mutation	13	70456605	C	T	32	73
BRCA	TCGA-BH-A18V	GPR180	SNP	Silent	13	95273462	C	T	25	51
BRCA	TCGA-BH-A18V	SLC15A1	SNP	Missense_Mutation	13	99376256	G	C	48	99
BRCA	TCGA-BH-A18V	NYNRIN	SNP	Silent	14	24880591	C	G	29	57
BRCA	TCGA-BH-A18V	MIS18BP1	SNP	Nonsense_Mutation	14	45716464	G	C	45	58
BRCA	TCGA-BH-A18V	PPP1R36	SNP	Missense_Mutation	14	65053580	G	C	33	79
BRCA	TCGA-BH-A18V	TSHR	SNP	Missense_Mutation	14	81606112	A	T	3	79
BRCA	TCGA-BH-A18V	STON2	SNP	Missense_Mutation	14	81862331	C	G	29	69
BRCA	TCGA-BH-A18V	CLMN	SNP	Nonsense_Mutation	14	95669354	G	A	45	48
BRCA	TCGA-BH-A18V	ARHGAP11A	SNP	Missense_Mutation	15	32929259	C	G	32	58
BRCA	TCGA-BH-A18V	LTK	SNP	Missense_Mutation	15	41800394	C	A	32	49
BRCA	TCGA-BH-A18V	FBN1	SNP	Missense_Mutation	15	48717990	G	T	45	83
BRCA	TCGA-BH-A18V	FGF7	SNP	Nonsense_Mutation	15	49716609	C	T	25	95
BRCA	TCGA-BH-A18V	TRIP4	SNP	Missense_Mutation	15	64687614	A	G	9	60
BRCA	TCGA-BH-A18V	NEO1	SNP	Missense_Mutation	15	73593721	C	T	23	73
BRCA	TCGA-BH-A18V	ARID3B	SNP	Missense_Mutation	15	74836815	G	A	45	89
BRCA	TCGA-BH-A18V	ZNF592	SNP	Silent	15	85327556	G	T	45	50
BRCA	TCGA-BH-A18V	ALPK3	SNP	Missense_Mutation	15	85405916	G	T	45	94
BRCA	TCGA-BH-A18V	MKL2	SNP	Missense_Mutation	16	14334339	C	G	29	63
BRCA	TCGA-BH-A18V	KIAA0430	SNP	Missense_Mutation	16	15702342	G	C	33	57
BRCA	TCGA-BH-A18V	IL21R	SNP	Missense_Mutation	16	27448978	G	C	41	62
BRCA	TCGA-BH-A18V	ATP2C2	SNP	Missense_Mutation	16	84473108	C	T	19	93
BRCA	TCGA-BH-A18V	COPS3	SNP	Missense_Mutation	17	17171253	G	T	48	99
BRCA	TCGA-BH-A18V	PHF12	SNP	Missense_Mutation	17	27240940	A	G	3	69
BRCA	TCGA-BH-A18V	GRB7	SNP	Missense_Mutation	17	37899236	T	A	55	88
BRCA	TCGA-BH-A18V	IFI35	SNP	Silent	17	41165360	C	G	24	49
BRCA	TCGA-BH-A18V	ZNF594	SNP	Missense_Mutation	17	5087301	C	G	30	45
BRCA	TCGA-BH-A18V	SCN4A	SNP	Silent	17	62026013	C	T	32	64
BRCA	TCGA-BH-A18V	ACOX1	SNP	Missense_Mutation	17	73949695	G	C	42	86
BRCA	TCGA-BH-A18V	TP53	SNP	Nonsense_Mutation	17	7579521	C	A	29	54
BRCA	TCGA-BH-A18V	APLP1	SNP	Missense_Mutation	19	36370329	G	C	41	91
BRCA	TCGA-BH-A18V	ACTN4	DEL	Frame_Shift_Del	19	39219701	C	-	30	79
BRCA	TCGA-BH-A18V	SAMD4B	SNP	Silent	19	39847654	C	T	24	74
BRCA	TCGA-BH-A18V	ARHGEF1	SNP	Missense_Mutation	19	42410647	G	T	33	81
BRCA	TCGA-BH-A18V	GIPR	SNP	Missense_Mutation	19	46178065	C	G	26	55
BRCA	TCGA-BH-A18V	HIF3A	SNP	Missense_Mutation	19	46828875	G	T	33	62
BRCA	TCGA-BH-A18V	SLC9A2	SNP	Silent	2	103274408	C	G	32	55
BRCA	TCGA-BH-A18V	TFCP2L1	SNP	Missense_Mutation	2	121981961	C	G	29	83
BRCA	TCGA-BH-A18V	CNTNAP5	SNP	Silent	2	125204421	G	A	34	57
BRCA	TCGA-BH-A18V	PLA2R1	SNP	Missense_Mutation	2	160840563	G	C	33	51
BRCA	TCGA-BH-A18V	XIRP2	SNP	Missense_Mutation	2	168100303	G	A	48	50
BRCA	TCGA-BH-A18V	LRP2	SNP	Missense_Mutation	2	170027091	A	G	7	93
BRCA	TCGA-BH-A18V	KBTBD10	SNP	Missense_Mutation	2	170366886	G	C	36	62
BRCA	TCGA-BH-A18V	METAP1D	SNP	Missense_Mutation	2	172944897	G	C	41	67
BRCA	TCGA-BH-A18V	DNAH7	SNP	Missense_Mutation	2	196740462	G	C	33	68
BRCA	TCGA-BH-A18V	MAP2	SNP	Silent	2	210574870	G	A	37	41
BRCA	TCGA-BH-A18V	APOB	SNP	Missense_Mutation	2	21233256	C	A	29	51
BRCA	TCGA-BH-A18V	ABCA12	SNP	Missense_Mutation	2	215815716	C	G	21	98
BRCA	TCGA-BH-A18V	HTR2B	SNP	Silent	2	231988413	G	C	35	51
BRCA	TCGA-BH-A18V	NEU4	SNP	Missense_Mutation	2	242755773	C	T	22	94
BRCA	TCGA-BH-A18V	EML6	SNP	Missense_Mutation	2	55093957	G	A	38	62
BRCA	TCGA-BH-A18V	C2orf81	SNP	Nonsense_Mutation	2	74643227	C	A	31	77
BRCA	TCGA-BH-A18V	SEL1L2	SNP	Missense_Mutation	20	13894543	G	T	34	79
BRCA	TCGA-BH-A18V	CST5	SNP	Silent	20	23858232	G	A	36	51
BRCA	TCGA-BH-A18V	NANP	SNP	Missense_Mutation	20	25597049	C	G	25	44
BRCA	TCGA-BH-A18V	CPXM1	SNP	Missense_Mutation	20	2776651	A	G	13	65
BRCA	TCGA-BH-A18V	ZNF840	SNP	Missense_Mutation	20	45092758	T	G	55	57
BRCA	TCGA-BH-A18V	SON	SNP	Missense_Mutation	21	34927217	T	C	50	80
BRCA	TCGA-BH-A18V	ZC3H7B	SNP	Missense_Mutation	22	41752377	G	C	47	100
BRCA	TCGA-BH-A18V	SCUBE1	SNP	Silent	22	43634854	C	T	32	61
BRCA	TCGA-BH-A18V	CT45A5	SNP	Silent	23	134947485	A	T	15	48
BRCA	TCGA-BH-A18V	FIGF	SNP	Missense_Mutation	23	15381257	G	C	36	69
BRCA	TCGA-BH-A18V	PHKA2	SNP	Splice_Site	23	18918818	C	G	32	79
BRCA	TCGA-BH-A18V	CDK16	SNP	Silent	23	47086816	G	T	45	94
BRCA	TCGA-BH-A18V	USP11	SNP	Missense_Mutation	23	47101698	C	T	21	93
BRCA	TCGA-BH-A18V	SSX4	SNP	Missense_Mutation	23	48244061	C	G	31	48
BRCA	TCGA-BH-A18V	SSX4B	SNP	Missense_Mutation	23	48270249	G	C	37	51
BRCA	TCGA-BH-A18V	CCNB3	SNP	Missense_Mutation	23	50053928	C	A	18	52
BRCA	TCGA-BH-A18V	ATP2B2	SNP	Missense_Mutation	3	10430045	C	T	25	100
BRCA	TCGA-BH-A18V	ALCAM	SNP	Missense_Mutation	3	105260577	G	C	34	55
BRCA	TCGA-BH-A18V	CBLB	SNP	Missense_Mutation	3	105397410	C	G	32	74
BRCA	TCGA-BH-A18V	UMPS	SNP	Missense_Mutation	3	124456915	G	C	33	81
BRCA	TCGA-BH-A18V	MUC13	SNP	Missense_Mutation	3	124632415	A	C	7	68
BRCA	TCGA-BH-A18V	DNAJC13	SNP	Silent	3	132247140	C	G	29	52
BRCA	TCGA-BH-A18V	MRPS22	SNP	Missense_Mutation	3	139074558	C	G	29	93
BRCA	TCGA-BH-A18V	TMEM183B	SNP	Missense_Mutation	3	149700668	G	C	41	82
BRCA	TCGA-BH-A18V	B3GALNT1	SNP	Silent	3	160804030	G	T	47	50
BRCA	TCGA-BH-A18V	LRRC31	SNP	Splice_site	3	169565908	C	A	22	60
BRCA	TCGA-BH-A18V	SEC62	SNP	Missense_Mutation	3	169684617	G	A	41	71
BRCA	TCGA-BH-A18V	GPR160	SNP	Silent	3	169802102	G	C	45	46
BRCA	TCGA-BH-A18V	ECE2	SNP	Missense_Mutation	3	184008058	G	T	33	93
BRCA	TCGA-BH-A18V	MB21D2	SNP	Missense_Mutation	3	192516720	G	C	45	99
BRCA	TCGA-BH-A18V	KIAA0226	SNP	Missense_Mutation	3	197402332	T	C	51	70
BRCA	TCGA-BH-A18V	GRM2	SNP	Missense_Mutation	3	51749276	C	G	22	100
BRCA	TCGA-BH-A18V	PARP3	SNP	Missense_Mutation	3	51978147	G	C	37	75
BRCA	TCGA-BH-A18V	PPP4R2	SNP	Missense_Mutation	3	73114577	C	G	22	64
BRCA	TCGA-BH-A18V	BANK1	SNP	Missense_Mutation	4	102946423	G	A	45	49
BRCA	TCGA-BH-A18V	DCHS2	SNP	Missense_Mutation	4	155156862	G	C	41	63
BRCA	TCGA-BH-A18V	FGA	SNP	Missense_Mutation	4	155510695	C	A	18	84
BRCA	TCGA-BH-A18V	NPY2R	SNP	Missense_Mutation	4	156135095	G	C	43	77
BRCA	TCGA-BH-A18V	UGT2B10	SNP	Missense_Mutation	4	69682121	T	A	51	48
BRCA	TCGA-BH-A18V	FRAS1	SNP	Silent	4	79188077	G	A	45	48
BRCA	TCGA-BH-A18V	UNC5C	SNP	Missense_Mutation	4	96222841	C	G	21	86
BRCA	TCGA-BH-A18V	ADAMTS19	SNP	Missense_Mutation	5	128797410	C	A	24	79
BRCA	TCGA-BH-A18V	STK10	SNP	Missense_Mutation	5	171533651	G	A	35	94
BRCA	TCGA-BH-A18V	NSD1	SNP	Silent	5	176721686	G	A	45	55
BRCA	TCGA-BH-A18V	CANX	SNP	Missense_Mutation	5	179134161	G	C	37	100
BRCA	TCGA-BH-A18V	CDH12	SNP	Splice_site	5	21975200	C	T	22	96
BRCA	TCGA-BH-A18V	PRKAA1	SNP	Missense_Mutation	5	40767578	T	G	63	77
BRCA	TCGA-BH-A18V	PARP8	SNP	Missense_Mutation	5	50128622	C	G	17	57
BRCA	TCGA-BH-A18V	CDC20B	SNP	Silent	5	54429340	G	C	45	50
BRCA	TCGA-BH-A18V	SKIV2L2	SNP	Missense_Mutation	5	54696232	T	C	63	88
BRCA	TCGA-BH-A18V	ADCY2	SNP	Silent	5	7820754	C	G	29	47
BRCA	TCGA-BH-A18V	MSH3	SNP	Silent	5	80071554	A	T	5	68
BRCA	TCGA-BH-A18V	BRD9	SNP	Silent	5	870670	G	A	48	36
BRCA	TCGA-BH-A18V	GRIK2	SNP	Missense_Mutation	6	102483412	C	G	32	100
BRCA	TCGA-BH-A18V	KIAA0408	DEL	Frame_Shift_Del	6	127775010	CATAATCTTC	-	25	95
BRCA	TCGA-BH-A18V	SYNJ2	SNP	Splice_Site	6	158484821	A	G	3	84
BRCA	TCGA-BH-A18V	HIST1H2BH	SNP	Silent	6	26251947	G	A	33	58
BRCA	TCGA-BH-A18V	HLA-E	DEL	In_Frame_Del	6	30459143	CCATGTGCA	-	26	60
BRCA	TCGA-BH-A18V	TNXB	SNP	Missense_Mutation	6	32023670	C	T	31	50
BRCA	TCGA-BH-A18V	GCLC	SNP	Missense_Mutation	6	53372344	C	G	21	100
BRCA	TCGA-BH-A18V	BMP5	SNP	Missense_Mutation	6	55739309	A	G	11	70
BRCA	TCGA-BH-A18V	GRM8	SNP	Nonsense_Mutation	7	126173298	C	T	21	99
BRCA	TCGA-BH-A18V	IMPDH1	SNP	Missense_Mutation	7	128038635	G	C	34	61
BRCA	TCGA-BH-A18V	STRA8	DEL	Frame_Shift_Del	7	134927510	GCATTGTCTCTGTCTATCCTCAGTGGCAG	-	34	62
BRCA	TCGA-BH-A18V	AEBP1	SNP	Silent	7	44153560	C	G	21	40
BRCA	TCGA-BH-A18V	PHTF2	DEL	In_Frame_Del	7	77558499	CAGAATCTGAAA	-	21	73
BRCA	TCGA-BH-A18V	AKAP9	SNP	Missense_Mutation	7	91718833	A	C	2	52
BRCA	TCGA-BH-A18V	DLX5	SNP	Missense_Mutation	7	96650328	T	G	64	91
BRCA	TCGA-BH-A18V	DLX5	SNP	Silent	7	96651583	A	G	4	66
BRCA	TCGA-BH-A18V	VPS13B	SNP	Missense_Mutation	8	100830977	C	G	32	88
BRCA	TCGA-BH-A18V	BLK	SNP	Silent	8	11400826	A	G	3	50
BRCA	TCGA-BH-A18V	NDUFB9	SNP	Missense_Mutation	8	125551447	G	T	41	36
BRCA	TCGA-BH-A18V	BAI1	SNP	Missense_Mutation	8	143618431	C	A	19	41
BRCA	TCGA-BH-A18V	STMN4	SNP	Nonsense_Mutation	8	27099197	G	A	45	54
BRCA	TCGA-BH-A18V	C8orf44	SNP	Missense_Mutation	8	67589946	G	A	45	49
BRCA	TCGA-BH-A18V	LPPR1	SNP	Missense_Mutation	9	104032342	A	C	2	70
BRCA	TCGA-BH-A18V	OR13C4	SNP	Missense_Mutation	9	107288610	A	T	16	83
BRCA	TCGA-BH-A18V	TMEM245	SNP	Missense_Mutation	9	111853251	C	G	32	75
BRCA	TCGA-BH-A18V	RGS3	SNP	Nonsense_Mutation	9	116241773	C	T	29	71
BRCA	TCGA-BH-A18V	RPL35	SNP	Missense_Mutation	9	127620332	C	G	28	78
BRCA	TCGA-BH-A18V	SURF6	SNP	Missense_Mutation	9	136200568	C	G	30	63
BRCA	TCGA-BH-A18V	WDR5	SNP	Splice_Site	9	137007069	A	T	3	84
BRCA	TCGA-BH-A18V	NOTCH1	SNP	Missense_Mutation	9	139390731	T	A	55	90
BRCA	TCGA-BH-A18V	ENTPD2	SNP	Missense_Mutation	9	139946068	G	C	47	58
BRCA	TCGA-BH-A18V	LINGO2	SNP	Missense_Mutation	9	27950483	C	G	30	100
BRCA	TCGA-BH-A18V	VPS13A	SNP	Missense_Mutation	9	79954717	G	C	47	68
BRCA	TCGA-BH-A18V	C9orf3	SNP	Missense_Mutation	9	97522822	G	A	45	52
BRCA	TCGA-BH-A1EN	CHIA	SNP	Missense_Mutation	1	111857167	G	A	34	51
BRCA	TCGA-BH-A1EN	MIA3	SNP	Splice_Site	1	222828136	G	C	36	92
BRCA	TCGA-BH-A1EN	ZP4	SNP	Missense_Mutation	1	238049097	G	C	44	59
BRCA	TCGA-BH-A1EN	ZNF669	SNP	Missense_Mutation	1	247265394	C	T	17	57
BRCA	TCGA-BH-A1EN	EXPH5	SNP	Missense_Mutation	11	108380596	T	C	49	61
BRCA	TCGA-BH-A1EN	OR4X1	SNP	Missense_Mutation	11	48286100	G	A	43	71
BRCA	TCGA-BH-A1EN	TRIM49B	SNP	Missense_Mutation	11	49059150	G	T	36	44
BRCA	TCGA-BH-A1EN	GRIN2B	SNP	Silent	12	13716419	C	G	17	56
BRCA	TCGA-BH-A1EN	KIF5A	SNP	Missense_Mutation	12	57966441	G	T	44	79
BRCA	TCGA-BH-A1EN	YEATS4	SNP	Missense_Mutation	12	69764730	A	C	15	51
BRCA	TCGA-BH-A1EN	MYO16	SNP	Missense_Mutation	13	109779790	C	T	19	58
BRCA	TCGA-BH-A1EN	TRMT5	SNP	Missense_Mutation	14	61446282	A	G	12	56
BRCA	TCGA-BH-A1EN	EML5	SNP	Missense_Mutation	14	89205341	C	T	29	96
BRCA	TCGA-BH-A1EN	MYO5A	SNP	Missense_Mutation	15	52667640	C	T	27	75
BRCA	TCGA-BH-A1EN	RORA	SNP	Missense_Mutation	15	60789700	T	G	54	94
BRCA	TCGA-BH-A1EN	SMG1	SNP	Missense_Mutation	16	18851175	C	A	20	98
BRCA	TCGA-BH-A1EN	CCDC79	SNP	Missense_Mutation	16	66819778	G	A	47	62
BRCA	TCGA-BH-A1EN	MYH8	SNP	Missense_Mutation	17	10312698	T	C	63	91
BRCA	TCGA-BH-A1EN	FAM57A	SNP	Missense_Mutation	17	644619	C	T	32	57
BRCA	TCGA-BH-A1EN	TYK2	SNP	Missense_Mutation	19	10468760	G	A	39	56
BRCA	TCGA-BH-A1EN	STK11	INS	Frame_Shift_Ins	19	1207090	-	A	61	85
BRCA	TCGA-BH-A1EN	SLC5A7	SNP	Missense_Mutation	2	108614411	T	A	58	91
BRCA	TCGA-BH-A1EN	MBD5	SNP	Silent	2	149227717	C	T	18	81
BRCA	TCGA-BH-A1EN	RAPH1	SNP	Missense_Mutation	2	204309665	G	A	39	100
BRCA	TCGA-BH-A1EN	NRXN1	SNP	Missense_Mutation	2	50464096	T	C	49	93
BRCA	TCGA-BH-A1EN	REG3G	SNP	Silent	2	79253873	G	T	41	40
BRCA	TCGA-BH-A1EN	CPSF3	SNP	Missense_Mutation	2	9597078	A	C	15	55
BRCA	TCGA-BH-A1EN	BTBD3	SNP	Silent	20	11904104	A	G	16	58
BRCA	TCGA-BH-A1EN	SEL1L2	SNP	Missense_Mutation	20	13894469	A	C	16	74
BRCA	TCGA-BH-A1EN	TSHZ2	SNP	Silent	20	51871632	C	T	19	55
BRCA	TCGA-BH-A1EN	TBX1	SNP	Missense_Mutation	22	19770438	C	A	28	49
BRCA	TCGA-BH-A1EN	TPST2	SNP	Silent	22	26936814	G	A	38	55
BRCA	TCGA-BH-A1EN	HAUS7	SNP	Silent	23	152728092	C	T	27	49
BRCA	TCGA-BH-A1EN	PLXNB3	SNP	Missense_Mutation	23	153032507	C	G	30	67
BRCA	TCGA-BH-A1EN	AVPR2	SNP	Missense_Mutation	23	153172076	G	A	37	62
BRCA	TCGA-BH-A1EN	MAP3K15	SNP	Missense_Mutation	23	19378922	G	A	38	63
BRCA	TCGA-BH-A1EN	PRDX4	SNP	Silent	23	23697375	A	G	16	35
BRCA	TCGA-BH-A1EN	SYTL4	SNP	Silent	23	99956630	C	T	22	52
BRCA	TCGA-BH-A1EN	SNRK	SNP	Missense_Mutation	3	43389849	G	C	46	52
BRCA	TCGA-BH-A1EN	FAM208A	SNP	Missense_Mutation	3	56667431	T	G	63	64
BRCA	TCGA-BH-A1EN	ABCE1	SNP	Missense_Mutation	4	146044454	C	G	18	100
BRCA	TCGA-BH-A1EN	CD38	SNP	Missense_Mutation	4	15842113	C	T	31	40
BRCA	TCGA-BH-A1EN	NOA1	SNP	Missense_Mutation	4	57842776	C	T	32	76
BRCA	TCGA-BH-A1EN	FBXL7	SNP	Missense_Mutation	5	15936967	C	T	27	100
BRCA	TCGA-BH-A1EN	PARP8	SNP	Missense_Mutation	5	50046013	G	C	33	82
BRCA	TCGA-BH-A1EN	RGMB	SNP	Silent	5	98129434	T	C	56	61
BRCA	TCGA-BH-A1EN	TNXB	SNP	Silent	6	32021331	C	T	21	48
BRCA	TCGA-BH-A1EN	WDR46	SNP	Missense_Mutation	6	33247311	A	G	6	73
BRCA	TCGA-BH-A1EN	MLL5	SNP	Missense_Mutation	7	104752417	C	T	29	60
BRCA	TCGA-BH-A1EN	FBXL18	SNP	Missense_Mutation	7	5541277	C	T	27	81
BRCA	TCGA-BH-A1EN	MATN2	SNP	Splice_site	8	98954005	C	T	27	49
BRCA	TCGA-BH-A1EN	ORM2	SNP	Silent	9	117092260	C	T	24	28
BRCA	TCGA-BH-A1EN	LINGO2	SNP	Missense_Mutation	9	27949804	T	G	62	81
BRCA	TCGA-BH-A1EO	CD1D	SNP	Nonsense_Mutation	1	158152850	C	T	23	63
BRCA	TCGA-BH-A1EO	AKT3	SNP	Nonsense_Mutation	1	243828162	G	A	40	71
BRCA	TCGA-BH-A1EO	ARID1A	SNP	Nonsense_Mutation	1	27057934	C	T	21	83
BRCA	TCGA-BH-A1EO	OR51Q1	SNP	Missense_Mutation	11	5443900	C	T	27	59
BRCA	TCGA-BH-A1EO	OR10Q1	SNP	Missense_Mutation	11	57995755	C	T	27	43
BRCA	TCGA-BH-A1EO	POLR3B	SNP	Missense_Mutation	12	106850925	G	A	40	100
BRCA	TCGA-BH-A1EO	NFE2	SNP	Missense_Mutation	12	54686775	G	A	38	56
BRCA	TCGA-BH-A1EO	NAV3	SNP	Missense_Mutation	12	78225321	C	G	21	93
BRCA	TCGA-BH-A1EO	ARHGEF7	SNP	Missense_Mutation	13	111927898	G	A	39	100
BRCA	TCGA-BH-A1EO	PNMA1	SNP	Missense_Mutation	14	74179741	C	T	23	72
BRCA	TCGA-BH-A1EO	DET1	SNP	Nonsense_Mutation	15	89074906	G	A	37	72
BRCA	TCGA-BH-A1EO	FANCA	SNP	Missense_Mutation	16	89818569	C	T	29	50
BRCA	TCGA-BH-A1EO	PLEKHM1	SNP	Missense_Mutation	17	43531287	G	A	35	54
BRCA	TCGA-BH-A1EO	CDH7	SNP	Missense_Mutation	18	63547856	G	A	37	94
BRCA	TCGA-BH-A1EO	TYK2	SNP	Missense_Mutation	19	10475348	C	T	31	70
BRCA	TCGA-BH-A1EO	AP2A1	SNP	Missense_Mutation	19	50302640	G	C	39	94
BRCA	TCGA-BH-A1EO	ZNF577	SNP	Splice_site	19	52381767	C	A	22	38
BRCA	TCGA-BH-A1EO	TTI1	SNP	Missense_Mutation	20	36641436	T	A	60	52
BRCA	TCGA-BH-A1EO	ZNF831	SNP	Nonsense_Mutation	20	57782030	C	T	27	65
BRCA	TCGA-BH-A1EO	ADAMTS5	SNP	Splice_Site	21	28306783	A	T	14	87
BRCA	TCGA-BH-A1EO	KRTAP10-9	SNP	Silent	21	46047184	C	T	27	46
BRCA	TCGA-BH-A1EO	DIP2A	SNP	Silent	21	47974150	G	A	45	70
BRCA	TCGA-BH-A1EO	TEX13A	SNP	Missense_Mutation	23	104464131	G	A	35	50
BRCA	TCGA-BH-A1EO	ODZ1	SNP	Silent	23	123554340	G	A	38	14
BRCA	TCGA-BH-A1EO	COL6A6	SNP	Missense_Mutation	3	130285633	C	T	19	49
BRCA	TCGA-BH-A1EO	ITPR1	SNP	Missense_Mutation	3	4854831	G	T	39	51
BRCA	TCGA-BH-A1EO	ASB5	DEL	Frame_Shift_Del	4	177138077	G	-	36	69
BRCA	TCGA-BH-A1EO	TRMT44	SNP	Nonsense_Mutation	4	8469962	C	T	19	59
BRCA	TCGA-BH-A1EO	SLC6A7	SNP	Missense_Mutation	5	149588999	G	A	41	68
BRCA	TCGA-BH-A1EO	TSPAN17	SNP	Splice_Site	5	176078754	G	A	35	94
BRCA	TCGA-BH-A1EO	RUFY1	INS	Frame_Shift_Ins	5	178994480	-	CGAG	26	54
BRCA	TCGA-BH-A1EO	UTP15	SNP	Missense_Mutation	5	72866470	G	A	40	80
BRCA	TCGA-BH-A1EO	FLNC	SNP	Missense_Mutation	7	128494721	G	T	48	98
BRCA	TCGA-BH-A1EO	CDK5	SNP	Splice_site	7	150752460	C	A	18	90
BRCA	TCGA-BH-A1EO	DMRTA1	SNP	Missense_Mutation	9	22451851	A	T	7	61
BRCA	TCGA-BH-A1ES	IGSF3	SNP	Nonsense_Mutation	1	117127361	G	T	42	69
BRCA	TCGA-BH-A1ES	PRAMEF7	SNP	Missense_Mutation	1	12980075	G	T	46	45
BRCA	TCGA-BH-A1ES	VDAC2	SNP	Missense_Mutation	10	76979101	T	A	54	77
BRCA	TCGA-BH-A1ES	RAB35	SNP	Silent	12	120536642	G	A	38	51
BRCA	TCGA-BH-A1ES	TM9SF2	SNP	Missense_Mutation	13	100190011	G	C	33	62
BRCA	TCGA-BH-A1ES	ZC3H13	SNP	Missense_Mutation	13	46616352	C	A	19	75
BRCA	TCGA-BH-A1ES	PLA2G4E	SNP	Missense_Mutation	15	42292345	G	T	41	75
BRCA	TCGA-BH-A1ES	IQCH	SNP	Missense_Mutation	15	67664804	C	T	31	39
BRCA	TCGA-BH-A1ES	C17orf49	SNP	Silent	17	6920583	G	A	45	65
BRCA	TCGA-BH-A1ES	MAST1	SNP	Nonsense_Mutation	19	12976829	C	T	31	52
BRCA	TCGA-BH-A1ES	TTN	SNP	Missense_Mutation	2	179419673	G	A	37	77
BRCA	TCGA-BH-A1ES	CRNKL1	SNP	Missense_Mutation	20	20023120	C	T	27	100
BRCA	TCGA-BH-A1ES	CDS1	SNP	Missense_Mutation	4	85530598	A	G	12	66
BRCA	TCGA-BH-A1ES	MLL3	SNP	Missense_Mutation	7	151859912	C	T	22	97
BRCA	TCGA-BH-A1ES	FDFT1	SNP	Missense_Mutation	8	11679310	G	A	37	97
BRCA	TCGA-BH-A1ES	GPR144	SNP	Missense_Mutation	9	127230042	G	T	48	74
BRCA	TCGA-BH-A1ES	MAPKAP1	SNP	Missense_Mutation	9	128347966	T	C	57	91
BRCA	TCGA-BH-A1ET	ITLN1	SNP	Missense_Mutation	1	160850420	C	T	31	58
BRCA	TCGA-BH-A1ET	ACTA1	SNP	Missense_Mutation	1	229567787	G	T	40	55
BRCA	TCGA-BH-A1ET	MTPAP	SNP	Nonsense_Mutation	10	30602780	G	A	39	55
BRCA	TCGA-BH-A1ET	ELMOD1	SNP	Missense_Mutation	11	107518302	G	C	43	96
BRCA	TCGA-BH-A1ET	KDM2A	SNP	Splice_Site	11	67010479	G	T	33	99
BRCA	TCGA-BH-A1ET	UCP3	SNP	Silent	11	73717218	C	T	23	24
BRCA	TCGA-BH-A1ET	HECTD4	SNP	Missense_Mutation	12	112687979	G	A	38	80
BRCA	TCGA-BH-A1ET	INHBE	SNP	Missense_Mutation	12	57849486	A	C	6	63
BRCA	TCGA-BH-A1ET	DUSP6	SNP	Silent	12	89744753	A	G	12	57
BRCA	TCGA-BH-A1ET	MYH2	SNP	Missense_Mutation	17	10436640	G	T	33	64
BRCA	TCGA-BH-A1ET	PIEZO2	SNP	Missense_Mutation	18	10855367	T	C	63	57
BRCA	TCGA-BH-A1ET	HIF3A	SNP	Silent	19	46815779	G	A	35	94
BRCA	TCGA-BH-A1ET	TTLL8	DEL	In_Frame_Del	22	50471725	GGAACCACT	-	35	93
BRCA	TCGA-BH-A1ET	SOX14	SNP	Missense_Mutation	3	137483952	G	A	42	98
BRCA	TCGA-BH-A1ET	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-BH-A1ET	LRIG1	SNP	Silent	3	66431242	C	T	21	53
BRCA	TCGA-BH-A1ET	FAM160A1	SNP	Missense_Mutation	4	152571037	A	C	1	53
BRCA	TCGA-BH-A1ET	PCDHB6	SNP	Missense_Mutation	5	140532071	C	A	21	60
BRCA	TCGA-BH-A1ET	NEDD9	SNP	Missense_Mutation	6	11191135	C	T	19	55
BRCA	TCGA-BH-A1ET	GPR63	SNP	Missense_Mutation	6	97247418	T	C	57	69
BRCA	TCGA-BH-A1ET	SDK1	SNP	Splice_Site	7	4308309	G	A	36	55
BRCA	TCGA-BH-A1ET	SLC35G5	SNP	Silent	8	11188822	G	A	38	51
BRCA	TCGA-BH-A1ET	FER1L6	SNP	Splice_Site	8	125047696	G	A	44	93
BRCA	TCGA-BH-A1ET	FER1L6	SNP	Silent	8	125076805	A	G	9	43
BRCA	TCGA-BH-A1ET	PRKDC	SNP	Missense_Mutation	8	48743255	C	T	19	56
BRCA	TCGA-BH-A1EU	FLG	SNP	Silent	1	152276139	C	T	24	51
BRCA	TCGA-BH-A1EU	GRIK4	SNP	Silent	11	120833362	C	T	21	100
BRCA	TCGA-BH-A1EU	TYR	SNP	Missense_Mutation	11	89018003	C	T	25	93
BRCA	TCGA-BH-A1EU	PABPC3	SNP	Missense_Mutation	13	25670833	G	A	38	66
BRCA	TCGA-BH-A1EU	DPEP1	SNP	Missense_Mutation	16	89696849	G	T	48	50
BRCA	TCGA-BH-A1EU	ZNF653	SNP	Silent	19	11598576	G	A	38	49
BRCA	TCGA-BH-A1EU	CAD	SNP	Missense_Mutation	2	27460602	C	A	26	78
BRCA	TCGA-BH-A1EU	PDE9A	SNP	Missense_Mutation	21	44182234	A	G	4	91
BRCA	TCGA-BH-A1EU	GAS2L1	SNP	Silent	22	29706530	T	C	63	49
BRCA	TCGA-BH-A1EU	KPNA4	SNP	Silent	3	160283041	T	C	60	56
BRCA	TCGA-BH-A1EU	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-BH-A1EU	CCR3	DEL	Frame_Shift_Del	3	46307328	C	-	28	62
BRCA	TCGA-BH-A1EU	TLR9	SNP	Missense_Mutation	3	52257592	C	T	19	51
BRCA	TCGA-BH-A1EU	FLNB	DEL	In_Frame_Del	3	58097580	GGC	-	35	58
BRCA	TCGA-BH-A1EU	PPP3CA	SNP	Missense_Mutation	4	102117231	A	G	6	91
BRCA	TCGA-BH-A1EU	KIAA1109	SNP	Missense_Mutation	4	123156157	G	A	33	84
BRCA	TCGA-BH-A1EU	MFSD8	SNP	Missense_Mutation	4	128854182	A	G	2	73
BRCA	TCGA-BH-A1EU	ENSG00000183199	INS	In_Frame_Ins	4	88813271	-	ATT	8	80
BRCA	TCGA-BH-A1EU	AGGF1	SNP	Missense_Mutation	5	76358903	T	G	51	58
BRCA	TCGA-BH-A1EU	AP4M1	SNP	Missense_Mutation	7	99700554	C	G	32	78
BRCA	TCGA-BH-A1EU	PNMA2	SNP	Missense_Mutation	8	26365461	G	A	40	62
BRCA	TCGA-BH-A1EU	ADHFE1	SNP	Missense_Mutation	8	67356944	C	T	19	78
BRCA	TCGA-BH-A1EU	MUSK	SNP	Missense_Mutation	9	113563026	G	A	40	99
BRCA	TCGA-BH-A1EV	KIF1B	SNP	Missense_Mutation	1	10421003	G	C	45	100
BRCA	TCGA-BH-A1EV	PGD	SNP	Missense_Mutation	1	10477061	C	T	31	71
BRCA	TCGA-BH-A1EV	SPTA1	SNP	Missense_Mutation	1	158648273	C	T	25	45
BRCA	TCGA-BH-A1EV	SYT14	SNP	Missense_Mutation	1	210334230	C	G	32	100
BRCA	TCGA-BH-A1EV	C1orf65	SNP	Missense_Mutation	1	223567997	A	C	7	49
BRCA	TCGA-BH-A1EV	ZNF695	SNP	Missense_Mutation	1	247150728	C	G	32	44
BRCA	TCGA-BH-A1EV	PTPRF	SNP	Missense_Mutation	1	44035447	C	T	29	99
BRCA	TCGA-BH-A1EV	LRRIQ3	SNP	Missense_Mutation	1	74492640	A	G	16	47
BRCA	TCGA-BH-A1EV	C10orf2	SNP	Missense_Mutation	10	102749027	C	T	31	66
BRCA	TCGA-BH-A1EV	TACC2	SNP	Missense_Mutation	10	123842793	A	G	6	41
BRCA	TCGA-BH-A1EV	OLAH	SNP	Missense_Mutation	10	15107599	G	A	38	32
BRCA	TCGA-BH-A1EV	ANK3	SNP	Missense_Mutation	10	61829925	C	G	32	87
BRCA	TCGA-BH-A1EV	GRID1	SNP	Missense_Mutation	10	88123815	C	G	18	74
BRCA	TCGA-BH-A1EV	CUL5	SNP	Missense_Mutation	11	107975024	G	C	45	79
BRCA	TCGA-BH-A1EV	MUC2	SNP	Missense_Mutation	11	1093600	G	A	39	61
BRCA	TCGA-BH-A1EV	SRPR	SNP	Missense_Mutation	11	126136424	T	C	57	42
BRCA	TCGA-BH-A1EV	SLC39A13	SNP	Missense_Mutation	11	47436635	C	G	22	100
BRCA	TCGA-BH-A1EV	SHANK2	SNP	Missense_Mutation	11	70331543	G	T	43	72
BRCA	TCGA-BH-A1EV	FAT3	SNP	Missense_Mutation	11	92533525	G	C	41	100
BRCA	TCGA-BH-A1EV	MAML2	SNP	Missense_Mutation	11	96074861	C	T	32	89
BRCA	TCGA-BH-A1EV	ARGLU1	SNP	Silent	13	107220001	C	T	29	60
BRCA	TCGA-BH-A1EV	PACS2	SNP	Missense_Mutation	14	105834442	C	A	32	58
BRCA	TCGA-BH-A1EV	AKAP6	SNP	Missense_Mutation	14	33015522	G	A	45	85
BRCA	TCGA-BH-A1EV	UNC79	SNP	Silent	14	93943917	G	A	37	49
BRCA	TCGA-BH-A1EV	IGDCC4	SNP	Silent	15	65694819	G	A	37	62
BRCA	TCGA-BH-A1EV	CSPG4	SNP	Silent	15	75968731	C	T	29	54
BRCA	TCGA-BH-A1EV	BNC1	SNP	Missense_Mutation	15	83932427	C	T	31	68
BRCA	TCGA-BH-A1EV	AGBL1	SNP	Missense_Mutation	15	86806012	G	A	45	66
BRCA	TCGA-BH-A1EV	C15orf32	SNP	Missense_Mutation	15	93016207	A	G	16	53
BRCA	TCGA-BH-A1EV	SFRS2	SNP	Missense_Mutation	17	74732502	G	C	41	84
BRCA	TCGA-BH-A1EV	TP53	SNP	Missense_Mutation	17	7578204	A	C	6	48
BRCA	TCGA-BH-A1EV	PIGN	SNP	Silent	18	59828374	C	A	19	48
BRCA	TCGA-BH-A1EV	PTPRM	SNP	Silent	18	8296428	G	A	33	72
BRCA	TCGA-BH-A1EV	CYP2A13	SNP	Missense_Mutation	19	41601717	C	G	32	57
BRCA	TCGA-BH-A1EV	CXCL17	SNP	Missense_Mutation	19	42946982	C	T	29	58
BRCA	TCGA-BH-A1EV	PSG1	SNP	Missense_Mutation	19	43382380	C	G	29	60
BRCA	TCGA-BH-A1EV	FAM83E	SNP	Missense_Mutation	19	49113164	C	A	30	82
BRCA	TCGA-BH-A1EV	PPP6R1	SNP	Missense_Mutation	19	55750982	C	T	29	74
BRCA	TCGA-BH-A1EV	PDCL3	SNP	Missense_Mutation	2	101188161	G	C	45	99
BRCA	TCGA-BH-A1EV	HOXD8	SNP	Missense_Mutation	2	176995644	C	G	29	94
BRCA	TCGA-BH-A1EV	FSIP2	SNP	Missense_Mutation	2	186672616	C	G	30	74
BRCA	TCGA-BH-A1EV	DOCK10	SNP	Missense_Mutation	2	225729686	G	A	33	87
BRCA	TCGA-BH-A1EV	FARP2	SNP	Missense_Mutation	2	242373613	G	C	33	100
BRCA	TCGA-BH-A1EV	IFT172	SNP	Silent	2	27707103	G	A	45	56
BRCA	TCGA-BH-A1EV	WDR43	SNP	Missense_Mutation	2	29135533	G	A	37	75
BRCA	TCGA-BH-A1EV	MSH6	SNP	Missense_Mutation	2	48032158	T	A	49	90
BRCA	TCGA-BH-A1EV	ADAM17	SNP	Silent	2	9633946	A	G	6	59
BRCA	TCGA-BH-A1EV	FASTKD5	SNP	Missense_Mutation	20	3128515	G	A	37	97
BRCA	TCGA-BH-A1EV	ZFP64	SNP	Silent	20	50701660	T	C	52	61
BRCA	TCGA-BH-A1EV	RUNX1	DEL	Frame_Shift_Del	21	36252990	A	-	9	49
BRCA	TCGA-BH-A1EV	TRMT2B	SNP	Missense_Mutation	23	100274321	C	A	32	50
BRCA	TCGA-BH-A1EV	GPR112	SNP	Missense_Mutation	23	135405374	G	A	37	60
BRCA	TCGA-BH-A1EV	GPR101	SNP	Missense_Mutation	23	136112852	C	T	29	52
BRCA	TCGA-BH-A1EV	BRCC3	SNP	Missense_Mutation	23	154305450	T	A	51	47
BRCA	TCGA-BH-A1EV	PPEF1	SNP	Missense_Mutation	23	18767947	G	A	45	50
BRCA	TCGA-BH-A1EV	MAP3K15	SNP	Silent	23	19390837	G	A	41	53
BRCA	TCGA-BH-A1EV	FAM47C	SNP	Missense_Mutation	23	37029349	C	A	18	54
BRCA	TCGA-BH-A1EV	C3orf24	SNP	Missense_Mutation	3	10146177	G	C	41	54
BRCA	TCGA-BH-A1EV	EPHB1	SNP	Silent	3	134920324	C	T	19	36
BRCA	TCGA-BH-A1EV	PTX3	SNP	Missense_Mutation	3	157160269	C	T	17	97
BRCA	TCGA-BH-A1EV	LMLN	SNP	Silent	3	197751548	C	T	27	49
BRCA	TCGA-BH-A1EV	NGLY1	SNP	Silent	3	25761536	T	G	50	43
BRCA	TCGA-BH-A1EV	ARPP21	SNP	Nonsense_Mutation	3	35785363	C	A	18	77
BRCA	TCGA-BH-A1EV	PLXNB1	SNP	Missense_Mutation	3	48455429	C	G	24	99
BRCA	TCGA-BH-A1EV	LRTM1	SNP	Missense_Mutation	3	54952782	C	T	23	50
BRCA	TCGA-BH-A1EV	ROBO2	SNP	Missense_Mutation	3	77607107	G	C	33	88
BRCA	TCGA-BH-A1EV	COL8A1	SNP	Missense_Mutation	3	99514307	C	T	23	54
BRCA	TCGA-BH-A1EV	LRBA	DEL	Frame_Shift_Del	4	151829582	G	-	46	78
BRCA	TCGA-BH-A1EV	ENPP6	SNP	Missense_Mutation	4	185045320	G	A	41	63
BRCA	TCGA-BH-A1EV	USP46	SNP	Missense_Mutation	4	53492238	C	T	29	98
BRCA	TCGA-BH-A1EV	ARHGAP24	SNP	Missense_Mutation	4	86852190	G	A	39	86
BRCA	TCGA-BH-A1EV	ZNF608	SNP	Missense_Mutation	5	123976948	G	C	45	81
BRCA	TCGA-BH-A1EV	SLC22A4	SNP	Missense_Mutation	5	131657966	C	G	20	86
BRCA	TCGA-BH-A1EV	PCDHA8	SNP	Missense_Mutation	5	140222591	C	T	27	70
BRCA	TCGA-BH-A1EV	ATP10B	SNP	Missense_Mutation	5	160042949	C	T	23	42
BRCA	TCGA-BH-A1EV	RICTOR	SNP	Missense_Mutation	5	38944651	C	T	29	96
BRCA	TCGA-BH-A1EV	ERAP1	SNP	Missense_Mutation	5	96129517	G	C	36	88
BRCA	TCGA-BH-A1EV	ARID1B	SNP	Missense_Mutation	6	157527466	G	C	33	79
BRCA	TCGA-BH-A1EV	PACRG	SNP	Silent	6	163483209	C	G	29	81
BRCA	TCGA-BH-A1EV	ZSCAN16	SNP	Silent	6	28097614	G	A	33	55
BRCA	TCGA-BH-A1EV	NOTCH4	SNP	Missense_Mutation	6	32190509	C	A	30	73
BRCA	TCGA-BH-A1EV	PKHD1	SNP	Missense_Mutation	6	51934282	C	T	30	83
BRCA	TCGA-BH-A1EV	OGFRL1	SNP	Missense_Mutation	6	72011289	G	A	39	87
BRCA	TCGA-BH-A1EV	SLC35A1	SNP	Silent	6	88221166	C	G	32	47
BRCA	TCGA-BH-A1EV	CREB3L2	SNP	Missense_Mutation	7	137597730	G	A	33	41
BRCA	TCGA-BH-A1EV	DNAH11	SNP	Missense_Mutation	7	21744181	G	C	45	100
BRCA	TCGA-BH-A1EV	AEBP1	SNP	Missense_Mutation	7	44147257	C	G	20	56
BRCA	TCGA-BH-A1EV	PKHD1L1	SNP	Silent	8	110418568	C	T	30	58
BRCA	TCGA-BH-A1EV	ENTPD4	SNP	Missense_Mutation	8	23291938	G	A	37	84
BRCA	TCGA-BH-A1EV	TEX15	SNP	Missense_Mutation	8	30695443	T	C	60	49
BRCA	TCGA-BH-A1EV	ERI1	SNP	Silent	8	8869082	G	C	45	51
BRCA	TCGA-BH-A1EV	CAMSAP1	SNP	Missense_Mutation	9	138774817	G	A	39	87
BRCA	TCGA-BH-A1EV	LRRC19	SNP	Missense_Mutation	9	26996420	C	T	29	80
BRCA	TCGA-BH-A1EV	LINGO2	SNP	Missense_Mutation	9	27948861	C	T	29	100
BRCA	TCGA-BH-A1EV	C9orf3	SNP	Silent	9	97563249	C	T	31	42
BRCA	TCGA-BH-A1EW	FBXO44	SNP	Missense_Mutation	1	11718651	G	A	41	85
BRCA	TCGA-BH-A1EW	ENO1	SNP	Missense_Mutation	1	8928049	T	G	64	91
BRCA	TCGA-BH-A1EW	H2AFY2	SNP	Missense_Mutation	10	71849864	C	A	26	82
BRCA	TCGA-BH-A1EW	CDHR1	SNP	Missense_Mutation	10	85965678	G	A	48	60
BRCA	TCGA-BH-A1EW	GUCY2C	SNP	Missense_Mutation	12	14835986	C	T	30	72
BRCA	TCGA-BH-A1EW	GTSF1	SNP	Missense_Mutation	12	54857054	C	T	26	74
BRCA	TCGA-BH-A1EW	OSBPL8	SNP	Splice_Site	12	76765227	C	T	20	100
BRCA	TCGA-BH-A1EW	LOC728498	SNP	Silent	15	30905821	C	T	27	64
BRCA	TCGA-BH-A1EW	SEPT9	SNP	Silent	17	75471846	C	T	19	27
BRCA	TCGA-BH-A1EW	FASN	SNP	Silent	17	80042925	G	A	38	40
BRCA	TCGA-BH-A1EW	AP1M2	SNP	Missense_Mutation	19	10690471	C	A	27	95
BRCA	TCGA-BH-A1EW	THOP1	SNP	Missense_Mutation	19	2811608	C	T	24	82
BRCA	TCGA-BH-A1EW	PEG3	SNP	Missense_Mutation	19	57334192	C	A	21	58
BRCA	TCGA-BH-A1EW	TEX13A	SNP	Silent	23	104464674	G	A	37	49
BRCA	TCGA-BH-A1EW	PGRMC1	SNP	Missense_Mutation	23	118377191	G	A	33	91
BRCA	TCGA-BH-A1EW	CNGA2	SNP	Missense_Mutation	23	150911669	G	A	45	81
BRCA	TCGA-BH-A1EW	NACAD	SNP	Missense_Mutation	7	45124668	T	C	59	80
BRCA	TCGA-BH-A1EX	DNM3	SNP	Missense_Mutation	1	172357865	C	G	24	66
BRCA	TCGA-BH-A1EX	HBB	SNP	Missense_Mutation	11	5248212	C	A	25	48
BRCA	TCGA-BH-A1EX	SLC43A3	SNP	Silent	11	57176738	C	G	26	48
BRCA	TCGA-BH-A1EX	KIAA1467	SNP	Missense_Mutation	12	13215838	G	T	36	85
BRCA	TCGA-BH-A1EX	ARID2	SNP	Silent	12	46242691	G	A	37	54
BRCA	TCGA-BH-A1EX	TMBIM4	INS	Frame_Shift_Ins	12	66539735	-	T	36	79
BRCA	TCGA-BH-A1EX	ABHD13	SNP	Missense_Mutation	13	108881865	A	G	4	89
BRCA	TCGA-BH-A1EX	MYCBP2	SNP	Silent	13	77786170	A	G	3	50
BRCA	TCGA-BH-A1EX	ACTN1	SNP	Missense_Mutation	14	69346794	G	A	44	100
BRCA	TCGA-BH-A1EX	SERPINA1	SNP	Missense_Mutation	14	94845836	C	T	23	75
BRCA	TCGA-BH-A1EX	CGNL1	SNP	Silent	15	57731718	G	A	33	60
BRCA	TCGA-BH-A1EX	CRAMP1L	SNP	Missense_Mutation	16	1718050	A	T	7	55
BRCA	TCGA-BH-A1EX	TFAP4	SNP	Missense_Mutation	16	4311920	G	A	38	63
BRCA	TCGA-BH-A1EX	CNTNAP4	SNP	Missense_Mutation	16	76587194	G	T	41	97
BRCA	TCGA-BH-A1EX	EPB41L3	SNP	Missense_Mutation	18	5395094	G	A	40	87
BRCA	TCGA-BH-A1EX	ZNF587	SNP	Missense_Mutation	19	58370315	G	T	40	37
BRCA	TCGA-BH-A1EX	TRIP10	SNP	Missense_Mutation	19	6750590	G	A	37	73
BRCA	TCGA-BH-A1EX	FAM168B	SNP	Missense_Mutation	2	131810522	C	T	23	95
BRCA	TCGA-BH-A1EX	THUMPD2	SNP	Missense_Mutation	2	39995627	T	C	61	51
BRCA	TCGA-BH-A1EX	ASPHD2	SNP	Missense_Mutation	22	26829801	T	C	57	85
BRCA	TCGA-BH-A1EX	COL4A5	SNP	Silent	23	107923956	T	G	58	47
BRCA	TCGA-BH-A1EX	VCX3B	SNP	Silent	23	8434247	C	T	27	29
BRCA	TCGA-BH-A1EX	ARHGAP31	SNP	Missense_Mutation	3	119101176	G	A	38	94
BRCA	TCGA-BH-A1EX	VPS8	SNP	Missense_Mutation	3	184644419	G	A	37	99
BRCA	TCGA-BH-A1EX	CELSR3	SNP	Missense_Mutation	3	48677270	G	A	35	96
BRCA	TCGA-BH-A1EX	PITX2	SNP	Missense_Mutation	4	111539459	G	A	40	100
BRCA	TCGA-BH-A1EX	IL12B	SNP	Missense_Mutation	5	158750314	A	G	14	37
BRCA	TCGA-BH-A1EX	MAP3K1	SNP	Missense_Mutation	5	56152545	T	C	51	87
BRCA	TCGA-BH-A1EX	PAPD4	SNP	Splice_site	5	78975402	C	G	28	60
BRCA	TCGA-BH-A1EX	OR2A7	SNP	Missense_Mutation	7	143955884	A	C	3	55
BRCA	TCGA-BH-A1EX	PXDNL	SNP	Nonsense_Mutation	8	52321348	G	A	38	43
BRCA	TCGA-BH-A1EX	RGS3	SNP	Missense_Mutation	9	116359127	A	G	7	90
BRCA	TCGA-BH-A1EX	CCDC171	SNP	Missense_Mutation	9	15784567	C	T	31	66
BRCA	TCGA-BH-A1EY	FLG2	SNP	Missense_Mutation	1	152329372	G	A	33	65
BRCA	TCGA-BH-A1EY	GNPAT	SNP	Silent	1	231406538	C	T	25	67
BRCA	TCGA-BH-A1EY	SH3D21	SNP	Missense_Mutation	1	36785498	A	G	5	52
BRCA	TCGA-BH-A1EY	MACF1	SNP	Silent	1	39918358	G	A	39	38
BRCA	TCGA-BH-A1EY	TESK2	SNP	Silent	1	45821107	C	T	30	51
BRCA	TCGA-BH-A1EY	INADL	SNP	Missense_Mutation	1	62293124	C	T	31	80
BRCA	TCGA-BH-A1EY	JAK1	SNP	Splice_Site	1	65307285	C	G	32	93
BRCA	TCGA-BH-A1EY	SEC31B	SNP	Silent	10	102266117	C	T	24	61
BRCA	TCGA-BH-A1EY	ADD3	SNP	Silent	10	111860429	C	T	26	52
BRCA	TCGA-BH-A1EY	ANK3	SNP	Missense_Mutation	10	61833656	C	T	19	99
BRCA	TCGA-BH-A1EY	GUCY2C	SNP	Silent	12	14774139	G	A	37	49
BRCA	TCGA-BH-A1EY	GUCY2C	SNP	Silent	12	14822720	A	C	7	29
BRCA	TCGA-BH-A1EY	ITPR2	SNP	Missense_Mutation	12	26818867	C	T	29	100
BRCA	TCGA-BH-A1EY	USP15	SNP	Silent	12	62749202	C	G	26	65
BRCA	TCGA-BH-A1EY	FERMT2	DEL	Splice_Site	14	53417294	TCCTGCGAGCGCGGAGGAAATGGC	-	62	66
BRCA	TCGA-BH-A1EY	ZFYVE19	SNP	Missense_Mutation	15	41099876	G	T	42	50
BRCA	TCGA-BH-A1EY	DYX1C1	SNP	Missense_Mutation	15	55727242	G	A	40	60
BRCA	TCGA-BH-A1EY	MAP2K4	SNP	Splice_Site	17	12044463	G	C	33	98
BRCA	TCGA-BH-A1EY	CCDC144A	SNP	Missense_Mutation	17	16612273	G	C	35	45
BRCA	TCGA-BH-A1EY	TP53	SNP	Splice_site	17	7578553	T	C	57	89
BRCA	TCGA-BH-A1EY	ALOXE3	SNP	Missense_Mutation	17	7999968	T	A	51	61
BRCA	TCGA-BH-A1EY	ARHGAP35	SNP	Silent	19	47422652	C	T	29	58
BRCA	TCGA-BH-A1EY	VRK3	SNP	Silent	19	50491661	G	A	47	54
BRCA	TCGA-BH-A1EY	NR1H2	INS	In_Frame_Ins	19	50881820	-	AAC	9	70
BRCA	TCGA-BH-A1EY	ZNF331	SNP	Nonsense_Mutation	19	54080627	C	G	19	45
BRCA	TCGA-BH-A1EY	NCR1	SNP	Missense_Mutation	19	55417683	G	A	38	30
BRCA	TCGA-BH-A1EY	TTN	SNP	Silent	2	179527763	C	T	31	43
BRCA	TCGA-BH-A1EY	PGAP1	SNP	Missense_Mutation	2	197744811	G	A	37	60
BRCA	TCGA-BH-A1EY	SPHKAP	SNP	Silent	2	228882873	G	T	45	42
BRCA	TCGA-BH-A1EY	USP34	SNP	Missense_Mutation	2	61575105	A	G	3	89
BRCA	TCGA-BH-A1EY	SLC4A5	SNP	Silent	2	74477542	G	A	45	83
BRCA	TCGA-BH-A1EY	SMYD1	SNP	Silent	2	88405936	G	A	39	2
BRCA	TCGA-BH-A1EY	SEL1L2	SNP	Nonsense_Mutation	20	13846124	C	A	29	94
BRCA	TCGA-BH-A1EY	CHD6	SNP	Missense_Mutation	20	40143457	G	C	33	90
BRCA	TCGA-BH-A1EY	COL18A1	SNP	Missense_Mutation	21	46875461	G	A	48	73
BRCA	TCGA-BH-A1EY	MGAT3	SNP	Missense_Mutation	22	39884229	C	T	27	81
BRCA	TCGA-BH-A1EY	MAGEB1	SNP	Silent	23	30268685	C	G	29	45
BRCA	TCGA-BH-A1EY	COL6A5	SNP	Missense_Mutation	3	130120614	T	G	63	59
BRCA	TCGA-BH-A1EY	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A1EY	SEC24D	SNP	Missense_Mutation	4	119718868	G	C	45	57
BRCA	TCGA-BH-A1EY	SLC26A4	SNP	Missense_Mutation	7	107353011	A	G	14	73
BRCA	TCGA-BH-A1EY	MLL3	SNP	Missense_Mutation	7	151860481	C	T	20	75
BRCA	TCGA-BH-A1EY	PINX1	SNP	Missense_Mutation	8	10623041	C	T	26	41
BRCA	TCGA-BH-A1EY	RSPO2	SNP	Missense_Mutation	8	108973037	T	A	52	80
BRCA	TCGA-BH-A1EY	TGS1	SNP	Missense_Mutation	8	56723652	G	C	45	100
BRCA	TCGA-BH-A1EY	DCAF10	SNP	Silent	9	37861271	C	G	23	48
BRCA	TCGA-BH-A1F0	CR1	SNP	Missense_Mutation	1	207796386	C	A	32	40
BRCA	TCGA-BH-A1F0	GALNT2	SNP	Silent	1	230384985	G	A	44	47
BRCA	TCGA-BH-A1F0	ELTD1	SNP	Nonsense_Mutation	1	79357327	C	T	21	100
BRCA	TCGA-BH-A1F0	BCAR3	SNP	Missense_Mutation	1	94048116	C	G	29	71
BRCA	TCGA-BH-A1F0	DCDC5	SNP	Nonsense_Mutation	11	30937137	G	A	39	51
BRCA	TCGA-BH-A1F0	ENSG00000180574	SNP	Missense_Mutation	12	10659202	T	C	60	75
BRCA	TCGA-BH-A1F0	GPC5	SNP	Missense_Mutation	13	92345944	G	A	48	67
BRCA	TCGA-BH-A1F0	TP53	DEL	Frame_Shift_Del	17	7578491	C	-	18	97
BRCA	TCGA-BH-A1F0	ANKRD24	SNP	Missense_Mutation	19	4217300	G	A	38	77
BRCA	TCGA-BH-A1F0	SYMPK	SNP	Silent	19	46319770	G	A	47	55
BRCA	TCGA-BH-A1F0	ZDBF2	SNP	Nonsense_Mutation	2	207170990	G	T	45	56
BRCA	TCGA-BH-A1F0	ASXL2	SNP	Missense_Mutation	2	25967231	C	T	32	96
BRCA	TCGA-BH-A1F0	TSHZ2	SNP	Missense_Mutation	20	51870526	C	A	24	57
BRCA	TCGA-BH-A1F0	PRR14L	SNP	Missense_Mutation	22	32112726	C	T	21	52
BRCA	TCGA-BH-A1F0	OPN1LW	SNP	Silent	23	153416306	C	T	31	13
BRCA	TCGA-BH-A1F0	CREBRF	SNP	Missense_Mutation	5	172535710	G	C	41	97
BRCA	TCGA-BH-A1F0	SGK1	SNP	Silent	6	134492799	G	C	33	51
BRCA	TCGA-BH-A1F0	SGK1	SNP	Nonsense_Mutation	6	134493422	G	T	45	100
BRCA	TCGA-BH-A1F0	NT5E	SNP	Silent	6	86201888	T	C	51	49
BRCA	TCGA-BH-A1F0	ITGB8	SNP	Missense_Mutation	7	20441487	A	T	11	70
BRCA	TCGA-BH-A1F0	ABCB1	SNP	Missense_Mutation	7	87148753	C	G	30	100
BRCA	TCGA-BH-A1F2	AADACL4	SNP	Silent	1	12726620	C	T	27	41
BRCA	TCGA-BH-A1F2	SPTA1	SNP	Missense_Mutation	1	158604413	C	G	29	76
BRCA	TCGA-BH-A1F2	LAMC1	SNP	Missense_Mutation	1	183090900	C	T	24	59
BRCA	TCGA-BH-A1F2	TROVE2	SNP	Missense_Mutation	1	193038629	C	T	23	58
BRCA	TCGA-BH-A1F2	CFH	SNP	Missense_Mutation	1	196696041	G	C	41	77
BRCA	TCGA-BH-A1F2	CFHR5	SNP	Silent	1	196973945	A	G	2	48
BRCA	TCGA-BH-A1F2	BATF3	SNP	Missense_Mutation	1	212860284	C	T	23	68
BRCA	TCGA-BH-A1F2	SCCPDH	SNP	Missense_Mutation	1	246890254	C	T	31	84
BRCA	TCGA-BH-A1F2	ABCC2	SNP	Missense_Mutation	10	101557000	G	A	39	71
BRCA	TCGA-BH-A1F2	FAM171A1	SNP	Missense_Mutation	10	15256166	C	A	32	54
BRCA	TCGA-BH-A1F2	FRMPD2	SNP	Missense_Mutation	10	49450274	G	A	33	75
BRCA	TCGA-BH-A1F2	OR5B3	SNP	Missense_Mutation	11	58170702	G	C	33	60
BRCA	TCGA-BH-A1F2	OR52E8	SNP	Missense_Mutation	11	5878074	C	G	18	54
BRCA	TCGA-BH-A1F2	RPS6KB2	SNP	Silent	11	67196636	G	A	45	55
BRCA	TCGA-BH-A1F2	PUS1	SNP	Missense_Mutation	12	132426329	G	A	38	99
BRCA	TCGA-BH-A1F2	KIF5A	SNP	Missense_Mutation	12	57957940	G	A	37	66
BRCA	TCGA-BH-A1F2	TUBA3C	SNP	Missense_Mutation	13	19752468	T	A	50	76
BRCA	TCGA-BH-A1F2	ABCC4	SNP	Silent	13	95861807	C	A	31	32
BRCA	TCGA-BH-A1F2	EIF5	SNP	Silent	14	103803551	C	G	29	78
BRCA	TCGA-BH-A1F2	ATG2B	SNP	Silent	14	96777942	C	A	29	57
BRCA	TCGA-BH-A1F2	SLX4	SNP	Missense_Mutation	16	3641097	C	T	29	88
BRCA	TCGA-BH-A1F2	NUFIP2	SNP	Missense_Mutation	17	27621071	C	G	30	80
BRCA	TCGA-BH-A1F2	FASN	DEL	In_Frame_Del	17	80051484	GAA	-	37	46
BRCA	TCGA-BH-A1F2	GLP2R	SNP	Splice_site	17	9739689	C	A	25	38
BRCA	TCGA-BH-A1F2	ZNF284	SNP	Missense_Mutation	19	44590278	C	T	29	52
BRCA	TCGA-BH-A1F2	KLC3	SNP	Silent	19	45848976	C	T	23	18
BRCA	TCGA-BH-A1F2	ZNF547	SNP	Missense_Mutation	19	57883271	C	T	29	56
BRCA	TCGA-BH-A1F2	AFF3	SNP	Silent	2	100194863	C	T	27	45
BRCA	TCGA-BH-A1F2	ACVR2A	SNP	Missense_Mutation	2	148676044	A	T	4	92
BRCA	TCGA-BH-A1F2	TTN	SNP	Splice_site	2	179497253	C	T	24	100
BRCA	TCGA-BH-A1F2	DNAH7	SNP	Silent	2	196762433	T	C	61	57
BRCA	TCGA-BH-A1F2	NBEAL1	SNP	Missense_Mutation	2	204030948	G	T	48	56
BRCA	TCGA-BH-A1F2	ATAD2B	SNP	Missense_Mutation	2	23980928	T	A	56	62
BRCA	TCGA-BH-A1F2	LAMP5	SNP	Missense_Mutation	20	9510417	A	T	5	76
BRCA	TCGA-BH-A1F2	COL4A6	SNP	Missense_Mutation	23	107435784	C	A	21	79
BRCA	TCGA-BH-A1F2	ZFP92	SNP	Missense_Mutation	23	152686448	G	A	37	73
BRCA	TCGA-BH-A1F2	MAGED1	SNP	Nonsense_Mutation	23	51640687	G	T	33	71
BRCA	TCGA-BH-A1F2	EDA	SNP	Silent	23	68836476	G	A	34	49
BRCA	TCGA-BH-A1F2	C3orf24	SNP	Missense_Mutation	3	10146113	C	T	23	81
BRCA	TCGA-BH-A1F2	DBR1	SNP	Silent	3	137886067	A	C	13	50
BRCA	TCGA-BH-A1F2	WWC2	SNP	Nonsense_Mutation	4	184129264	C	T	27	96
BRCA	TCGA-BH-A1F2	FBXL7	SNP	Missense_Mutation	5	15928218	G	A	39	82
BRCA	TCGA-BH-A1F2	ADAMTS2	SNP	Splice_Site	5	178548660	A	G	14	86
BRCA	TCGA-BH-A1F2	C7orf57	SNP	Silent	7	48080992	C	T	22	50
BRCA	TCGA-BH-A1F2	VPS13B	SNP	Silent	8	100832306	C	T	32	71
BRCA	TCGA-BH-A1F2	BAI1	SNP	Missense_Mutation	8	143560728	G	A	40	60
BRCA	TCGA-BH-A1F2	CNBD1	SNP	Missense_Mutation	8	87878778	A	G	5	70
BRCA	TCGA-BH-A1F2	CNTNAP3	SNP	Silent	9	39177396	C	T	27	33
BRCA	TCGA-BH-A1F2	PCSK5	SNP	Missense_Mutation	9	78789962	C	G	18	71
BRCA	TCGA-BH-A1F5	PRAMEF4	SNP	Missense_Mutation	1	12942944	A	T	3	58
BRCA	TCGA-BH-A1F5	ILF2	SNP	Missense_Mutation	1	153635506	G	T	35	58
BRCA	TCGA-BH-A1F5	KCNK18	SNP	Silent	10	118957011	G	A	39	42
BRCA	TCGA-BH-A1F5	PRPF19	SNP	Missense_Mutation	11	60668993	A	C	6	90
BRCA	TCGA-BH-A1F5	TMED2	SNP	Missense_Mutation	12	124081212	T	A	60	93
BRCA	TCGA-BH-A1F5	LRRC16B	SNP	Missense_Mutation	14	24538005	C	G	22	61
BRCA	TCGA-BH-A1F5	APOBR	SNP	Missense_Mutation	16	28506765	C	T	21	50
BRCA	TCGA-BH-A1F5	CNOT1	SNP	Missense_Mutation	16	58589747	T	A	64	93
BRCA	TCGA-BH-A1F5	CENPBD1	SNP	Missense_Mutation	16	90038321	C	T	30	49
BRCA	TCGA-BH-A1F5	SLC2A4	SNP	Missense_Mutation	17	7187613	C	T	30	50
BRCA	TCGA-BH-A1F5	GREB1L	SNP	Missense_Mutation	18	18983893	C	T	31	85
BRCA	TCGA-BH-A1F5	BCL3	DEL	Frame_Shift_Del	19	45260669	AGTGGTGAGCGT	-	7	33
BRCA	TCGA-BH-A1F5	PEG3	SNP	Missense_Mutation	19	57327932	C	T	17	41
BRCA	TCGA-BH-A1F5	LRP1B	SNP	Silent	2	141806577	C	T	32	48
BRCA	TCGA-BH-A1F5	ASAP2	SNP	Silent	2	9528605	A	C	6	13
BRCA	TCGA-BH-A1F5	COL9A3	SNP	Missense_Mutation	20	61467665	A	T	6	60
BRCA	TCGA-BH-A1F5	ZGPAT	SNP	Silent	20	62366833	G	T	42	64
BRCA	TCGA-BH-A1F5	DEPDC5	SNP	Missense_Mutation	22	32188070	T	A	53	88
BRCA	TCGA-BH-A1F5	PLXNB3	SNP	Silent	23	153032741	C	T	18	61
BRCA	TCGA-BH-A1F5	ARAF	SNP	Missense_Mutation	23	47430836	G	A	38	54
BRCA	TCGA-BH-A1F5	RNF212	SNP	Silent	4	1107207	T	G	55	47
BRCA	TCGA-BH-A1F5	BTNL8	SNP	Missense_Mutation	5	180377494	G	A	45	54
BRCA	TCGA-BH-A1F5	MAP3K1	SNP	Nonsense_Mutation	5	56178169	C	T	29	91
BRCA	TCGA-BH-A1F5	RASGRF2	SNP	Missense_Mutation	5	80381624	C	T	22	100
BRCA	TCGA-BH-A1F5	GPANK1	SNP	Missense_Mutation	6	31631634	T	A	64	72
BRCA	TCGA-BH-A1F5	TG	SNP	Nonsense_Mutation	8	133984055	C	T	19	61
BRCA	TCGA-BH-A1F5	ZNF462	SNP	Silent	9	109771899	G	A	43	58
BRCA	TCGA-BH-A1F5	PTGS1	SNP	Missense_Mutation	9	125154645	C	T	23	99
BRCA	TCGA-BH-A1F6	SLC16A4	SNP	Missense_Mutation	1	110919758	A	C	13	44
BRCA	TCGA-BH-A1F6	LRRC47	SNP	Missense_Mutation	1	3697704	G	C	39	91
BRCA	TCGA-BH-A1F6	ITGB1	SNP	Missense_Mutation	10	33212629	A	G	2	92
BRCA	TCGA-BH-A1F6	ACTA2	SNP	Missense_Mutation	10	90708572	C	T	19	99
BRCA	TCGA-BH-A1F6	HPX	DEL	Frame_Shift_Del	11	6458782	GCGGCCCAGCCATCTCAGG	-	34	68
BRCA	TCGA-BH-A1F6	OR2D2	SNP	Silent	11	6913561	T	G	59	51
BRCA	TCGA-BH-A1F6	NAA25	SNP	Silent	12	112509715	G	A	40	40
BRCA	TCGA-BH-A1F6	KDM5A	DEL	Splice_Site	12	432949	TGAAA	-	55	94
BRCA	TCGA-BH-A1F6	ATN1	SNP	Missense_Mutation	12	7045008	G	A	41	57
BRCA	TCGA-BH-A1F6	C1RL	SNP	Missense_Mutation	12	7249748	G	A	42	87
BRCA	TCGA-BH-A1F6	TMTC4	SNP	Missense_Mutation	13	101264696	T	A	51	90
BRCA	TCGA-BH-A1F6	SLITRK1	SNP	Silent	13	84453897	G	A	40	50
BRCA	TCGA-BH-A1F6	MMP14	SNP	Silent	14	23314529	A	G	3	61
BRCA	TCGA-BH-A1F6	NEMF	SNP	Missense_Mutation	14	50281529	T	C	49	85
BRCA	TCGA-BH-A1F6	PSMA3	SNP	Silent	14	58727696	C	T	19	45
BRCA	TCGA-BH-A1F6	SMEK1	SNP	Missense_Mutation	14	91937280	C	T	30	88
BRCA	TCGA-BH-A1F6	RYR3	SNP	Missense_Mutation	15	34105734	G	C	42	98
BRCA	TCGA-BH-A1F6	RYR3	SNP	Splice_Site	15	34140623	G	A	40	100
BRCA	TCGA-BH-A1F6	CCPG1	SNP	Missense_Mutation	15	55653040	T	C	56	55
BRCA	TCGA-BH-A1F6	EEF2K	SNP	Missense_Mutation	16	22262009	G	A	39	85
BRCA	TCGA-BH-A1F6	EEF2K	SNP	Missense_Mutation	16	22295264	G	A	42	98
BRCA	TCGA-BH-A1F6	DUS2L	SNP	Missense_Mutation	16	68087509	T	A	60	82
BRCA	TCGA-BH-A1F6	NFAT5	SNP	Missense_Mutation	16	69725862	G	T	46	66
BRCA	TCGA-BH-A1F6	SPIRE2	DEL	Frame_Shift_Del	16	89924855	GCCCC	-	42	52
BRCA	TCGA-BH-A1F6	MYH2	SNP	Silent	17	10443330	C	T	28	57
BRCA	TCGA-BH-A1F6	TMEM106A	SNP	Missense_Mutation	17	41365219	T	G	51	56
BRCA	TCGA-BH-A1F6	MMD	SNP	Silent	17	53491548	A	T	3	49
BRCA	TCGA-BH-A1F6	TP53	SNP	Missense_Mutation	17	7578551	A	G	11	89
BRCA	TCGA-BH-A1F6	ALOX15B	SNP	Missense_Mutation	17	7942523	G	A	42	66
BRCA	TCGA-BH-A1F6	NPC1	SNP	Missense_Mutation	18	21136530	A	T	3	47
BRCA	TCGA-BH-A1F6	SYDE1	SNP	Silent	19	15224594	C	T	18	79
BRCA	TCGA-BH-A1F6	SIN3B	INS	Frame_Shift_Ins	19	16976441	-	C	58	90
BRCA	TCGA-BH-A1F6	ZNF208	SNP	Missense_Mutation	19	22155521	G	A	36	70
BRCA	TCGA-BH-A1F6	PRX	SNP	Silent	19	40901699	G	A	33	51
BRCA	TCGA-BH-A1F6	PRX	SNP	Silent	19	40902909	G	C	45	52
BRCA	TCGA-BH-A1F6	PRX	SNP	Silent	19	40903119	G	C	45	54
BRCA	TCGA-BH-A1F6	RFX2	SNP	Silent	19	6007781	G	A	41	50
BRCA	TCGA-BH-A1F6	FOXD4L1	SNP	Missense_Mutation	2	114257296	A	G	8	79
BRCA	TCGA-BH-A1F6	MYO7B	SNP	Missense_Mutation	2	128334255	C	T	19	50
BRCA	TCGA-BH-A1F6	PASK	SNP	Missense_Mutation	2	242065791	C	G	19	29
BRCA	TCGA-BH-A1F6	KLHL6	SNP	Silent	3	183209883	C	A	22	41
BRCA	TCGA-BH-A1F6	INTU	SNP	Missense_Mutation	4	128637566	A	C	1	66
BRCA	TCGA-BH-A1F6	NOP14	SNP	Silent	4	2945909	C	T	17	55
BRCA	TCGA-BH-A1F6	PCDHGA11	SNP	Silent	5	140802474	G	A	38	36
BRCA	TCGA-BH-A1F6	TCOF1	SNP	Missense_Mutation	5	149755799	C	T	28	58
BRCA	TCGA-BH-A1F6	KIFC1	SNP	Missense_Mutation	6	33374639	G	A	38	91
BRCA	TCGA-BH-A1F6	NPTX2	SNP	Silent	7	98257809	T	C	63	52
BRCA	TCGA-BH-A1F6	INTS10	SNP	Missense_Mutation	8	19677944	C	G	19	96
BRCA	TCGA-BH-A1F6	FGFR1	SNP	Silent	8	38282147	G	A	40	49
BRCA	TCGA-BH-A1F6	ASPH	SNP	Silent	8	62460693	C	T	29	54
BRCA	TCGA-BH-A1F6	OR1Q1	SNP	Silent	9	125377241	C	T	21	50
BRCA	TCGA-BH-A1F8	SLC25A24	SNP	Missense_Mutation	1	108742651	C	G	30	84
BRCA	TCGA-BH-A1F8	SETDB1	INS	Frame_Shift_Ins	1	150931666	-	A	57	57
BRCA	TCGA-BH-A1F8	FLG	SNP	Missense_Mutation	1	152279012	C	G	30	44
BRCA	TCGA-BH-A1F8	ATP8B2	SNP	Missense_Mutation	1	154303324	C	G	32	63
BRCA	TCGA-BH-A1F8	FLAD1	SNP	Nonsense_Mutation	1	154961309	C	G	17	63
BRCA	TCGA-BH-A1F8	ARHGEF11	SNP	Missense_Mutation	1	156915948	C	T	29	94
BRCA	TCGA-BH-A1F8	RAB7L1	SNP	Nonsense_Mutation	1	205739909	C	T	21	87
BRCA	TCGA-BH-A1F8	OBSCN	SNP	Nonsense_Mutation	1	228538601	C	T	21	96
BRCA	TCGA-BH-A1F8	GRHL3	SNP	Missense_Mutation	1	24657969	C	G	32	100
BRCA	TCGA-BH-A1F8	SLC2A7	SNP	Missense_Mutation	1	9074847	C	T	31	72
BRCA	TCGA-BH-A1F8	ARHGAP29	SNP	Missense_Mutation	1	94668277	C	G	32	53
BRCA	TCGA-BH-A1F8	TIAL1	SNP	Missense_Mutation	10	121337005	A	C	8	90
BRCA	TCGA-BH-A1F8	CCAR1	SNP	Nonsense_Mutation	10	70482304	C	T	29	91
BRCA	TCGA-BH-A1F8	PTEN	SNP	Missense_Mutation	10	89653845	A	T	2	86
BRCA	TCGA-BH-A1F8	TBCEL	SNP	Missense_Mutation	11	120929104	G	C	41	87
BRCA	TCGA-BH-A1F8	MUC5B	SNP	Missense_Mutation	11	1254384	C	T	27	46
BRCA	TCGA-BH-A1F8	BRSK2	SNP	Silent	11	1466828	C	T	30	66
BRCA	TCGA-BH-A1F8	ABCC8	SNP	Missense_Mutation	11	17470166	C	T	30	98
BRCA	TCGA-BH-A1F8	SCGB1C1	SNP	Missense_Mutation	11	193718	C	T	26	65
BRCA	TCGA-BH-A1F8	KCNA4	SNP	Missense_Mutation	11	30032528	G	T	33	66
BRCA	TCGA-BH-A1F8	RNH1	SNP	Nonsense_Mutation	11	499131	G	C	45	57
BRCA	TCGA-BH-A1F8	OR51I1	SNP	Silent	11	5462646	G	A	33	74
BRCA	TCGA-BH-A1F8	PPME1	SNP	Missense_Mutation	11	73882561	G	C	37	81
BRCA	TCGA-BH-A1F8	MYO7A	SNP	Missense_Mutation	11	76893573	G	A	45	97
BRCA	TCGA-BH-A1F8	STAB2	SNP	Nonsense_Mutation	12	104140458	G	T	45	61
BRCA	TCGA-BH-A1F8	CCDC60	SNP	Missense_Mutation	12	119942952	C	T	31	58
BRCA	TCGA-BH-A1F8	TMEM233	SNP	Missense_Mutation	12	120031720	G	A	45	86
BRCA	TCGA-BH-A1F8	HIP1R	SNP	Silent	12	123333101	C	G	29	67
BRCA	TCGA-BH-A1F8	C12orf36	SNP	Silent	12	13526234	C	T	29	41
BRCA	TCGA-BH-A1F8	SLC6A12	SNP	Missense_Mutation	12	313734	G	A	41	53
BRCA	TCGA-BH-A1F8	FGD4	SNP	Missense_Mutation	12	32793219	G	A	34	96
BRCA	TCGA-BH-A1F8	EFCAB4B	SNP	Silent	12	3757680	C	G	29	46
BRCA	TCGA-BH-A1F8	FAM186A	SNP	Missense_Mutation	12	50754707	C	T	29	47
BRCA	TCGA-BH-A1F8	ERBB3	SNP	Missense_Mutation	12	56489535	G	T	40	91
BRCA	TCGA-BH-A1F8	DYRK2	SNP	Silent	12	68051050	G	A	47	50
BRCA	TCGA-BH-A1F8	TMTC2	SNP	Missense_Mutation	12	83359365	C	G	32	74
BRCA	TCGA-BH-A1F8	GPR12	SNP	Silent	13	27333626	C	T	28	56
BRCA	TCGA-BH-A1F8	KIAA1704	SNP	Missense_Mutation	13	45563856	G	A	37	59
BRCA	TCGA-BH-A1F8	LPAR6	SNP	Silent	13	48985612	G	A	33	62
BRCA	TCGA-BH-A1F8	DIS3	SNP	Missense_Mutation	13	73351596	C	T	31	95
BRCA	TCGA-BH-A1F8	LRR1	SNP	Missense_Mutation	14	50069163	C	T	30	62
BRCA	TCGA-BH-A1F8	SIX1	SNP	Nonsense_Mutation	14	61115628	C	A	30	100
BRCA	TCGA-BH-A1F8	CLMN	SNP	Missense_Mutation	14	95669924	C	T	29	56
BRCA	TCGA-BH-A1F8	CAPN3	SNP	Missense_Mutation	15	42652049	G	A	45	75
BRCA	TCGA-BH-A1F8	MYO5C	SNP	Missense_Mutation	15	52529738	C	T	28	53
BRCA	TCGA-BH-A1F8	UNC13C	SNP	Missense_Mutation	15	54586231	G	C	45	64
BRCA	TCGA-BH-A1F8	TLE3	SNP	Splice_Site	15	70347638	C	G	32	95
BRCA	TCGA-BH-A1F8	MORF4L1	SNP	Missense_Mutation	15	79179664	C	G	32	81
BRCA	TCGA-BH-A1F8	HS3ST4	SNP	Missense_Mutation	16	26147270	G	A	45	99
BRCA	TCGA-BH-A1F8	CLN3	SNP	Missense_Mutation	16	28498999	G	A	45	81
BRCA	TCGA-BH-A1F8	ADCY7	SNP	Missense_Mutation	16	50326656	G	C	41	65
BRCA	TCGA-BH-A1F8	TEPP	SNP	Silent	16	58018668	C	T	31	50
BRCA	TCGA-BH-A1F8	HYDIN	SNP	Silent	16	71098725	G	C	41	56
BRCA	TCGA-BH-A1F8	PMFBP1	SNP	Missense_Mutation	16	72159902	C	T	27	42
BRCA	TCGA-BH-A1F8	ZNF469	SNP	Missense_Mutation	16	88497563	G	A	45	66
BRCA	TCGA-BH-A1F8	ABR	SNP	Silent	17	1012303	C	T	24	48
BRCA	TCGA-BH-A1F8	VTN	SNP	Missense_Mutation	17	26697169	G	T	34	67
BRCA	TCGA-BH-A1F8	AP2B1	SNP	Missense_Mutation	17	34044241	A	G	2	92
BRCA	TCGA-BH-A1F8	PTRF	SNP	Missense_Mutation	17	40556818	C	G	30	76
BRCA	TCGA-BH-A1F8	CYB5D2	SNP	Splice_site	17	4060161	G	T	47	85
BRCA	TCGA-BH-A1F8	AOC2	SNP	Silent	17	40997999	A	T	7	40
BRCA	TCGA-BH-A1F8	G6PC	SNP	Missense_Mutation	17	41053005	G	A	33	100
BRCA	TCGA-BH-A1F8	TMC8	SNP	Missense_Mutation	17	76133392	G	A	33	59
BRCA	TCGA-BH-A1F8	CCDC42	SNP	Nonsense_Mutation	17	8638833	C	A	29	83
BRCA	TCGA-BH-A1F8	STX8	SNP	Missense_Mutation	17	9408460	C	G	32	57
BRCA	TCGA-BH-A1F8	ADNP2	SNP	Missense_Mutation	18	77895655	G	A	33	81
BRCA	TCGA-BH-A1F8	AP1M2	SNP	Silent	19	10691955	G	A	37	46
BRCA	TCGA-BH-A1F8	NFIC	SNP	Missense_Mutation	19	3456562	G	A	37	60
BRCA	TCGA-BH-A1F8	DMKN	SNP	Missense_Mutation	19	36003351	G	A	45	62
BRCA	TCGA-BH-A1F8	ZNF829	SNP	Missense_Mutation	19	37382578	C	T	32	62
BRCA	TCGA-BH-A1F8	EEF2	SNP	Silent	19	3980544	C	T	32	74
BRCA	TCGA-BH-A1F8	CHAF1A	SNP	Missense_Mutation	19	4442293	G	A	33	90
BRCA	TCGA-BH-A1F8	CNOT3	SNP	Missense_Mutation	19	54659091	G	T	33	63
BRCA	TCGA-BH-A1F8	NLRP9	SNP	Missense_Mutation	19	56243480	C	T	21	48
BRCA	TCGA-BH-A1F8	MUC16	SNP	Missense_Mutation	19	9059785	C	T	32	53
BRCA	TCGA-BH-A1F8	INSIG2	SNP	Silent	2	118864687	C	G	32	51
BRCA	TCGA-BH-A1F8	NEB	SNP	Missense_Mutation	2	152544005	C	G	29	75
BRCA	TCGA-BH-A1F8	UBR3	SNP	Missense_Mutation	2	170863687	C	T	23	78
BRCA	TCGA-BH-A1F8	TTN	SNP	Missense_Mutation	2	179426695	C	T	32	48
BRCA	TCGA-BH-A1F8	TTN	SNP	Silent	2	179604271	G	A	40	55
BRCA	TCGA-BH-A1F8	SSFA2	SNP	Silent	2	182794293	C	A	25	50
BRCA	TCGA-BH-A1F8	ANKAR	SNP	Silent	2	190593522	C	T	29	66
BRCA	TCGA-BH-A1F8	SATB2	SNP	Missense_Mutation	2	200173524	G	A	40	76
BRCA	TCGA-BH-A1F8	ZNF142	SNP	Silent	2	219508614	G	A	45	58
BRCA	TCGA-BH-A1F8	ARMC9	SNP	Missense_Mutation	2	232079614	C	T	29	87
BRCA	TCGA-BH-A1F8	CHRND	SNP	Missense_Mutation	2	233399028	G	A	45	76
BRCA	TCGA-BH-A1F8	TRPM8	SNP	Missense_Mutation	2	234858761	G	C	45	82
BRCA	TCGA-BH-A1F8	IQCA1	SNP	Missense_Mutation	2	237308074	C	T	24	77
BRCA	TCGA-BH-A1F8	CCT7	SNP	Silent	2	73471840	C	T	31	40
BRCA	TCGA-BH-A1F8	ADRA2B	SNP	Missense_Mutation	2	96781346	G	C	33	61
BRCA	TCGA-BH-A1F8	KIF16B	SNP	Silent	20	16496280	C	T	29	63
BRCA	TCGA-BH-A1F8	C20orf173	SNP	Nonsense_Mutation	20	34116299	G	T	45	56
BRCA	TCGA-BH-A1F8	ELMO2	SNP	Silent	20	44999096	G	A	33	98
BRCA	TCGA-BH-A1F8	C21orf7	SNP	Silent	21	30464781	A	G	5	48
BRCA	TCGA-BH-A1F8	SCAF4	SNP	Silent	21	33044075	G	A	44	47
BRCA	TCGA-BH-A1F8	DEPDC5	SNP	Missense_Mutation	22	32257357	G	A	39	71
BRCA	TCGA-BH-A1F8	PDGFB	SNP	Splice_site	22	39636860	G	T	37	50
BRCA	TCGA-BH-A1F8	MUM1L1	SNP	Missense_Mutation	23	105450345	C	T	25	42
BRCA	TCGA-BH-A1F8	KLHL15	SNP	Silent	23	24024511	G	A	39	45
BRCA	TCGA-BH-A1F8	FOXP3	SNP	Missense_Mutation	23	49113997	C	T	23	63
BRCA	TCGA-BH-A1F8	NUDT10	INS	Frame_Shift_Ins	23	51075962	-	A	43	86
BRCA	TCGA-BH-A1F8	SHROOM2	SNP	Missense_Mutation	23	9900268	C	T	23	47
BRCA	TCGA-BH-A1F8	RHO	SNP	Missense_Mutation	3	129251468	C	G	32	55
BRCA	TCGA-BH-A1F8	IQCJ-SCHIP1	SNP	Missense_Mutation	3	159605599	G	A	45	100
BRCA	TCGA-BH-A1F8	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A1F8	ZNF502	SNP	Missense_Mutation	3	44763099	G	A	33	72
BRCA	TCGA-BH-A1F8	FOXP1	SNP	Missense_Mutation	3	71026112	G	C	40	100
BRCA	TCGA-BH-A1F8	OTUD4	SNP	Missense_Mutation	4	146067547	G	A	45	62
BRCA	TCGA-BH-A1F8	LDB2	SNP	Missense_Mutation	4	16504411	G	A	40	99
BRCA	TCGA-BH-A1F8	SH3RF1	SNP	Silent	4	170057685	G	A	43	58
BRCA	TCGA-BH-A1F8	FAT1	SNP	Missense_Mutation	4	187541561	G	A	33	84
BRCA	TCGA-BH-A1F8	FAM193A	SNP	Missense_Mutation	4	2632760	C	T	31	99
BRCA	TCGA-BH-A1F8	MUC7	SNP	Missense_Mutation	4	71347020	G	A	33	50
BRCA	TCGA-BH-A1F8	WDFY3	SNP	Missense_Mutation	4	85678260	C	T	31	88
BRCA	TCGA-BH-A1F8	AFF1	DEL	In_Frame_Del	4	88035829	CTGTCAAGGCCT	-	24	73
BRCA	TCGA-BH-A1F8	CDKL3	SNP	Missense_Mutation	5	133695701	C	T	29	89
BRCA	TCGA-BH-A1F8	NR3C1	SNP	Missense_Mutation	5	142780154	A	C	11	81
BRCA	TCGA-BH-A1F8	C1QTNF2	SNP	Silent	5	159776691	G	A	40	42
BRCA	TCGA-BH-A1F8	RUFY1	SNP	Missense_Mutation	5	179020635	C	T	29	76
BRCA	TCGA-BH-A1F8	CDH12	SNP	Missense_Mutation	5	21975470	C	T	32	83
BRCA	TCGA-BH-A1F8	IL7R	SNP	Missense_Mutation	5	35857117	C	G	32	51
BRCA	TCGA-BH-A1F8	SEPP1	SNP	Silent	5	42801110	G	C	33	55
BRCA	TCGA-BH-A1F8	ZSWIM6	SNP	Missense_Mutation	5	60822199	G	C	41	85
BRCA	TCGA-BH-A1F8	RASGRF2	SNP	Silent	5	80382663	C	T	19	47
BRCA	TCGA-BH-A1F8	LAMA2	SNP	Silent	6	129835646	C	T	29	60
BRCA	TCGA-BH-A1F8	HIVEP2	SNP	Silent	6	143094076	C	T	23	22
BRCA	TCGA-BH-A1F8	HIST1H3B	SNP	Nonsense_Mutation	6	26032006	C	A	30	98
BRCA	TCGA-BH-A1F8	TNXB	SNP	Silent	6	32065667	C	T	29	70
BRCA	TCGA-BH-A1F8	KIF6	SNP	Missense_Mutation	6	39507966	C	G	32	83
BRCA	TCGA-BH-A1F8	SLC35B2	SNP	Splice_site	6	44222443	T	C	54	62
BRCA	TCGA-BH-A1F8	ORC3	SNP	Missense_Mutation	6	88372852	A	G	16	61
BRCA	TCGA-BH-A1F8	POLM	SNP	Splice_site	7	44118410	C	A	30	74
BRCA	TCGA-BH-A1F8	TMEM248	SNP	Missense_Mutation	7	66410096	C	T	18	83
BRCA	TCGA-BH-A1F8	COL1A2	SNP	Missense_Mutation	7	94053669	C	T	30	74
BRCA	TCGA-BH-A1F8	PKHD1L1	SNP	Missense_Mutation	8	110487470	C	T	29	79
BRCA	TCGA-BH-A1F8	ZHX2	SNP	Silent	8	123965814	G	A	45	29
BRCA	TCGA-BH-A1F8	TGS1	SNP	Missense_Mutation	8	56698896	G	A	45	72
BRCA	TCGA-BH-A1F8	ANGPTL2	SNP	Silent	9	129851266	G	C	45	53
BRCA	TCGA-BH-A1F8	DOLK	SNP	Missense_Mutation	9	131709575	C	T	31	71
BRCA	TCGA-BH-A1F8	SEC16A	SNP	Missense_Mutation	9	139357443	C	T	29	77
BRCA	TCGA-BH-A1F8	TAF1L	SNP	Missense_Mutation	9	32632676	C	G	32	79
BRCA	TCGA-BH-A1F8	KIAA2026	SNP	Missense_Mutation	9	5920984	G	A	33	65
BRCA	TCGA-BH-A1F8	PTPRD	SNP	Missense_Mutation	9	8465571	G	T	45	75
BRCA	TCGA-BH-A1F8	HIATL1	INS	Frame_Shift_Ins	9	97209196	-	T	36	90
BRCA	TCGA-BH-A1FC	GPSM2	SNP	Missense_Mutation	1	109466693	C	A	23	73
BRCA	TCGA-BH-A1FC	FAM40A	SNP	Splice_site	1	110584264	G	T	43	99
BRCA	TCGA-BH-A1FC	RFX5	SNP	Missense_Mutation	1	151315882	T	C	64	58
BRCA	TCGA-BH-A1FC	TCHHL1	SNP	Missense_Mutation	1	152059455	C	T	24	52
BRCA	TCGA-BH-A1FC	TNN	SNP	Missense_Mutation	1	175052966	G	A	45	53
BRCA	TCGA-BH-A1FC	KCNK2	SNP	Missense_Mutation	1	215259881	C	G	32	84
BRCA	TCGA-BH-A1FC	USH2A	SNP	Missense_Mutation	1	215814011	C	T	29	55
BRCA	TCGA-BH-A1FC	ECE1	SNP	Missense_Mutation	1	21582517	C	T	26	96
BRCA	TCGA-BH-A1FC	ADCK3	SNP	Silent	1	227174270	C	A	23	51
BRCA	TCGA-BH-A1FC	ZNF669	SNP	Nonstop_Mutation	1	247264537	C	G	29	44
BRCA	TCGA-BH-A1FC	ZNF669	SNP	Splice_Site	1	247264622	C	A	32	61
BRCA	TCGA-BH-A1FC	TFAP2E	SNP	Missense_Mutation	1	36054084	G	A	43	79
BRCA	TCGA-BH-A1FC	CYP4X1	SNP	Missense_Mutation	1	47504392	C	G	23	50
BRCA	TCGA-BH-A1FC	LEPR	SNP	Nonsense_Mutation	1	66064359	C	G	29	52
BRCA	TCGA-BH-A1FC	TCF7L2	SNP	Missense_Mutation	10	114912185	G	A	38	98
BRCA	TCGA-BH-A1FC	PNLIP	SNP	Missense_Mutation	10	118306869	C	T	19	44
BRCA	TCGA-BH-A1FC	BCCIP	SNP	Missense_Mutation	10	127519171	A	C	9	62
BRCA	TCGA-BH-A1FC	SLC39A12	SNP	Missense_Mutation	10	18289724	A	G	16	72
BRCA	TCGA-BH-A1FC	AGAP5	SNP	Splice_site	10	75456920	A	C	3	50
BRCA	TCGA-BH-A1FC	DDX10	SNP	Silent	11	108577472	A	G	3	49
BRCA	TCGA-BH-A1FC	OR8B12	SNP	Silent	11	124412897	G	T	43	52
BRCA	TCGA-BH-A1FC	OR51Q1	SNP	Missense_Mutation	11	5444283	G	T	42	57
BRCA	TCGA-BH-A1FC	EHD1	SNP	Missense_Mutation	11	64627773	C	T	30	95
BRCA	TCGA-BH-A1FC	CHORDC1	SNP	Missense_Mutation	11	89938730	C	T	29	94
BRCA	TCGA-BH-A1FC	CCDC60	SNP	Missense_Mutation	12	119909871	G	C	33	58
BRCA	TCGA-BH-A1FC	CABP1	DEL	Frame_Shift_Del	12	121093654	GC	-	46	51
BRCA	TCGA-BH-A1FC	CACNA1C	SNP	Missense_Mutation	12	2775935	G	A	38	97
BRCA	TCGA-BH-A1FC	SLC6A12	SNP	Missense_Mutation	12	301666	T	A	56	49
BRCA	TCGA-BH-A1FC	FMNL3	SNP	Missense_Mutation	12	50047562	C	G	32	68
BRCA	TCGA-BH-A1FC	KCNA5	SNP	Missense_Mutation	12	5154220	G	A	44	56
BRCA	TCGA-BH-A1FC	NUP107	SNP	Missense_Mutation	12	69135678	C	T	19	79
BRCA	TCGA-BH-A1FC	APAF1	SNP	Missense_Mutation	12	99074109	G	A	45	97
BRCA	TCGA-BH-A1FC	KPNA3	SNP	Missense_Mutation	13	50299608	G	A	46	100
BRCA	TCGA-BH-A1FC	MDP1	SNP	Missense_Mutation	14	24683764	A	C	1	75
BRCA	TCGA-BH-A1FC	PPP4R4	SNP	Missense_Mutation	14	94718122	G	A	37	94
BRCA	TCGA-BH-A1FC	PAPOLA	SNP	Missense_Mutation	14	97003383	C	A	32	70
BRCA	TCGA-BH-A1FC	VIMP	SNP	Missense_Mutation	15	101813007	C	T	27	88
BRCA	TCGA-BH-A1FC	CILP	SNP	Missense_Mutation	15	65490934	C	T	19	78
BRCA	TCGA-BH-A1FC	ANKRD34C	SNP	Missense_Mutation	15	79586661	G	T	41	50
BRCA	TCGA-BH-A1FC	SNN	SNP	Missense_Mutation	16	11769936	C	A	26	64
BRCA	TCGA-BH-A1FC	C16orf62	SNP	Missense_Mutation	16	19628021	C	T	19	66
BRCA	TCGA-BH-A1FC	ZNF785	SNP	Silent	16	30596492	G	T	39	44
BRCA	TCGA-BH-A1FC	NCOR1	SNP	Missense_Mutation	17	15943783	G	C	33	54
BRCA	TCGA-BH-A1FC	PIGS	SNP	Missense_Mutation	17	26897924	C	A	31	68
BRCA	TCGA-BH-A1FC	MMD	SNP	Silent	17	53471851	A	T	1	55
BRCA	TCGA-BH-A1FC	MSI2	SNP	Missense_Mutation	17	55334455	C	T	32	68
BRCA	TCGA-BH-A1FC	DDX5	SNP	Missense_Mutation	17	62496729	A	C	3	93
BRCA	TCGA-BH-A1FC	LRRC37A3	SNP	Missense_Mutation	17	62856814	G	C	42	46
BRCA	TCGA-BH-A1FC	TP53	SNP	Splice_Site	17	7577610	T	C	53	82
BRCA	TCGA-BH-A1FC	CHD3	SNP	Missense_Mutation	17	7797876	G	C	45	98
BRCA	TCGA-BH-A1FC	RFNG	SNP	Missense_Mutation	17	80008632	C	T	17	53
BRCA	TCGA-BH-A1FC	MYO9B	SNP	Missense_Mutation	19	17320474	G	A	33	93
BRCA	TCGA-BH-A1FC	ZNF77	SNP	Silent	19	2934636	C	T	19	33
BRCA	TCGA-BH-A1FC	CA11	SNP	Splice_Site	19	49143044	C	T	19	81
BRCA	TCGA-BH-A1FC	NLRP2	SNP	Nonsense_Mutation	19	55512174	G	T	33	52
BRCA	TCGA-BH-A1FC	NEB	SNP	Missense_Mutation	2	152424595	A	G	2	77
BRCA	TCGA-BH-A1FC	FMNL2	SNP	Missense_Mutation	2	153497312	C	T	32	100
BRCA	TCGA-BH-A1FC	SLC40A1	SNP	Missense_Mutation	2	190426750	C	T	19	100
BRCA	TCGA-BH-A1FC	KDM3A	SNP	Silent	2	86709180	C	T	17	50
BRCA	TCGA-BH-A1FC	CNGA3	SNP	Missense_Mutation	2	99013092	G	A	45	97
BRCA	TCGA-BH-A1FC	CNGA3	SNP	Missense_Mutation	2	99013166	G	C	33	74
BRCA	TCGA-BH-A1FC	KIAA1211L	SNP	Silent	2	99449358	T	C	56	52
BRCA	TCGA-BH-A1FC	GART	SNP	Missense_Mutation	21	34903121	C	G	30	98
BRCA	TCGA-BH-A1FC	C21orf58	SNP	Missense_Mutation	21	47737979	C	G	30	63
BRCA	TCGA-BH-A1FC	DDX17	SNP	Missense_Mutation	22	38891866	C	G	32	84
BRCA	TCGA-BH-A1FC	ZC4H2	SNP	Silent	23	64137656	C	T	22	57
BRCA	TCGA-BH-A1FC	YIPF6	SNP	Splice_Site	23	67738655	G	T	48	88
BRCA	TCGA-BH-A1FC	CMTM7	SNP	Silent	3	32491026	C	T	27	48
BRCA	TCGA-BH-A1FC	OXSR1	SNP	Missense_Mutation	3	38224558	C	G	29	56
BRCA	TCGA-BH-A1FC	MST1R	SNP	Missense_Mutation	3	49939908	C	T	29	83
BRCA	TCGA-BH-A1FC	CPEB2	SNP	Missense_Mutation	4	15067831	G	A	38	89
BRCA	TCGA-BH-A1FC	PROM1	INS	Frame_Shift_Ins	4	15981063	-	A	49	70
BRCA	TCGA-BH-A1FC	TACC3	SNP	Missense_Mutation	4	1737522	G	T	36	99
BRCA	TCGA-BH-A1FC	TEC	SNP	Splice_Site	4	48148341	C	A	18	98
BRCA	TCGA-BH-A1FC	PPEF2	SNP	Splice_Site	4	76804229	C	G	24	87
BRCA	TCGA-BH-A1FC	GRID2	SNP	Missense_Mutation	4	94159637	G	A	37	90
BRCA	TCGA-BH-A1FC	SMARCAD1	SNP	Missense_Mutation	4	95162063	G	C	43	58
BRCA	TCGA-BH-A1FC	MARCH6	SNP	Silent	5	10390504	A	C	8	39
BRCA	TCGA-BH-A1FC	PCDHGA4	SNP	Silent	5	140735310	C	T	19	37
BRCA	TCGA-BH-A1FC	SYNE1	SNP	Missense_Mutation	6	152861142	C	G	20	81
BRCA	TCGA-BH-A1FC	IPCEF1	SNP	Missense_Mutation	6	154489200	G	A	45	81
BRCA	TCGA-BH-A1FC	HLA-DRB1	INS	Frame_Shift_Ins	6	32551956	-	TT	27	53
BRCA	TCGA-BH-A1FC	ARMC12	SNP	Missense_Mutation	6	35705872	G	C	41	77
BRCA	TCGA-BH-A1FC	EEF1A1	SNP	Missense_Mutation	6	74228163	C	G	17	98
BRCA	TCGA-BH-A1FC	COL12A1	SNP	Missense_Mutation	6	75887490	T	C	54	63
BRCA	TCGA-BH-A1FC	CNR1	SNP	Missense_Mutation	6	88853975	C	G	24	100
BRCA	TCGA-BH-A1FC	RRAGD	SNP	Missense_Mutation	6	90097153	C	T	23	84
BRCA	TCGA-BH-A1FC	MMS22L	SNP	Missense_Mutation	6	97613182	C	G	32	57
BRCA	TCGA-BH-A1FC	MUC17	SNP	Missense_Mutation	7	100686638	A	G	14	50
BRCA	TCGA-BH-A1FC	CEP41	SNP	Missense_Mutation	7	130040629	C	T	29	100
BRCA	TCGA-BH-A1FC	TMEM120A	SNP	Splice_Site	7	75617568	A	C	6	85
BRCA	TCGA-BH-A1FC	KIAA1324L	SNP	Missense_Mutation	7	86539164	A	G	12	68
BRCA	TCGA-BH-A1FC	RNF139	INS	Frame_Shift_Ins	8	125487355	-	G	27	79
BRCA	TCGA-BH-A1FC	INTS10	SNP	Silent	8	19694625	C	T	25	51
BRCA	TCGA-BH-A1FC	NEFM	SNP	Missense_Mutation	8	24771805	G	A	37	84
BRCA	TCGA-BH-A1FC	GNRH1	SNP	Missense_Mutation	8	25280779	C	T	28	60
BRCA	TCGA-BH-A1FC	QSOX2	INS	Frame_Shift_Ins	9	139118623	-	A	41	67
BRCA	TCGA-BH-A1FC	SH3GL2	SNP	Silent	9	17761476	T	A	53	43
BRCA	TCGA-BH-A1FC	UNC13B	SNP	Missense_Mutation	9	35396568	G	C	48	69
BRCA	TCGA-BH-A1FD	FAM5B	SNP	Missense_Mutation	1	177247731	G	A	37	64
BRCA	TCGA-BH-A1FD	PDCD11	SNP	Silent	10	105200305	C	T	27	54
BRCA	TCGA-BH-A1FD	TAF3	SNP	Missense_Mutation	10	8006644	A	G	16	76
BRCA	TCGA-BH-A1FD	PIK3C2A	SNP	Missense_Mutation	11	17190547	T	A	50	57
BRCA	TCGA-BH-A1FD	DCHS1	SNP	Missense_Mutation	11	6644754	T	C	52	90
BRCA	TCGA-BH-A1FD	RAB30	SNP	Silent	11	82708280	G	T	39	100
BRCA	TCGA-BH-A1FD	PTHLH	SNP	Missense_Mutation	12	28116584	G	A	34	78
BRCA	TCGA-BH-A1FD	TEP1	SNP	Missense_Mutation	14	20871899	G	A	39	49
BRCA	TCGA-BH-A1FD	IFT140	SNP	Missense_Mutation	16	1621431	A	T	13	53
BRCA	TCGA-BH-A1FD	ANKRD11	SNP	Missense_Mutation	16	89345615	C	A	30	46
BRCA	TCGA-BH-A1FD	ZZEF1	SNP	Missense_Mutation	17	3992057	C	T	25	70
BRCA	TCGA-BH-A1FD	TP53	SNP	Missense_Mutation	17	7578413	C	G	17	97
BRCA	TCGA-BH-A1FD	TMEM37	INS	Frame_Shift_Ins	2	120194728	-	T	27	38
BRCA	TCGA-BH-A1FD	TTN	SNP	Missense_Mutation	2	179545856	A	G	4	81
BRCA	TCGA-BH-A1FD	RASGRP3	SNP	Missense_Mutation	2	33749009	T	C	50	92
BRCA	TCGA-BH-A1FD	CYP24A1	SNP	Nonsense_Mutation	20	52773723	G	A	38	56
BRCA	TCGA-BH-A1FD	MICAL3	INS	Frame_Shift_Ins	22	18305741	-	G	55	23
BRCA	TCGA-BH-A1FD	NDUFA1	SNP	Silent	23	119005895	C	T	23	42
BRCA	TCGA-BH-A1FD	LARP7	SNP	Missense_Mutation	4	113575296	A	T	3	89
BRCA	TCGA-BH-A1FD	NAA11	SNP	Missense_Mutation	4	80246803	C	T	19	96
BRCA	TCGA-BH-A1FD	STK32A	SNP	Silent	5	146750276	G	C	37	27
BRCA	TCGA-BH-A1FD	PIK3R1	SNP	Missense_Mutation	5	67591083	T	C	52	91
BRCA	TCGA-BH-A1FD	RP1	SNP	Missense_Mutation	8	55539199	G	T	44	87
BRCA	TCGA-BH-A1FD	CNTRL	DEL	In_Frame_Del	9	123904505	AGA	-	11	78
BRCA	TCGA-BH-A1FD	SMARCA2	SNP	Silent	9	2081840	C	A	26	58
BRCA	TCGA-BH-A1FD	AQP7	INS	Frame_Shift_Ins	9	33395131	-	CATCTTCCTC	55	50
BRCA	TCGA-BH-A1FD	FAM22F	SNP	Missense_Mutation	9	97084511	G	A	39	58
BRCA	TCGA-BH-A1FE	MUC1	SNP	Missense_Mutation	1	155160715	T	C	60	67
BRCA	TCGA-BH-A1FE	GON4L	SNP	Splice_Site	1	155753682	T	G	60	44
BRCA	TCGA-BH-A1FE	LIPF	SNP	Splice_Site	10	90427444	G	T	44	79
BRCA	TCGA-BH-A1FE	ERBB2	SNP	Missense_Mutation	17	37880261	G	T	33	98
BRCA	TCGA-BH-A1FE	TP53	SNP	Missense_Mutation	17	7577541	T	A	60	86
BRCA	TCGA-BH-A1FE	RGPD8	SNP	Missense_Mutation	2	113147238	A	G	15	67
BRCA	TCGA-BH-A1FE	SPHKAP	SNP	Missense_Mutation	2	228855865	G	T	43	56
BRCA	TCGA-BH-A1FE	ZBTB33	SNP	Missense_Mutation	23	119389142	A	C	2	60
BRCA	TCGA-BH-A1FE	PIK3CA	SNP	Missense_Mutation	3	178916944	A	G	1	89
BRCA	TCGA-BH-A1FE	TNK2	SNP	Missense_Mutation	3	195595043	C	T	22	59
BRCA	TCGA-BH-A1FE	RHAG	SNP	Silent	6	49582475	G	A	36	65
BRCA	TCGA-BH-A1FE	MUC17	SNP	Missense_Mutation	7	100685739	G	A	44	47
BRCA	TCGA-BH-A1FE	CSMD3	SNP	Missense_Mutation	8	113299452	C	T	31	100
BRCA	TCGA-BH-A1FE	C9orf66	INS	Frame_Shift_Ins	9	214549	-	G	59	32
BRCA	TCGA-BH-A1FE	TLN1	SNP	Missense_Mutation	9	35706350	G	A	38	77
BRCA	TCGA-BH-A1FG	WDR47	SNP	Missense_Mutation	1	109553818	A	C	1	55
BRCA	TCGA-BH-A1FG	HRNR	SNP	Missense_Mutation	1	152188847	A	G	10	53
BRCA	TCGA-BH-A1FG	TNFSF4	SNP	Missense_Mutation	1	173155705	C	T	23	76
BRCA	TCGA-BH-A1FG	CYP4A22	SNP	Missense_Mutation	1	47610609	G	A	40	41
BRCA	TCGA-BH-A1FG	AKR1C4	SNP	Missense_Mutation	10	5254676	G	A	37	59
BRCA	TCGA-BH-A1FG	RASAL1	SNP	Splice_site	12	113553739	C	A	24	79
BRCA	TCGA-BH-A1FG	RPLP0	SNP	Missense_Mutation	12	120635133	C	T	25	77
BRCA	TCGA-BH-A1FG	NBEA	SNP	Silent	13	35785239	G	C	45	55
BRCA	TCGA-BH-A1FG	KIAA0100	SNP	Silent	17	26970251	G	A	33	60
BRCA	TCGA-BH-A1FG	USP32	SNP	Missense_Mutation	17	58257912	G	C	34	77
BRCA	TCGA-BH-A1FG	LILRA4	SNP	Missense_Mutation	19	54849483	C	T	27	51
BRCA	TCGA-BH-A1FG	TRIP12	DEL	Frame_Shift_Del	2	230663600	GA	-	41	98
BRCA	TCGA-BH-A1FG	TMEM214	SNP	Missense_Mutation	2	27262671	G	A	46	49
BRCA	TCGA-BH-A1FG	WDR54	SNP	Silent	2	74652076	A	G	8	46
BRCA	TCGA-BH-A1FG	RAB40A	SNP	Missense_Mutation	23	102755501	G	A	38	58
BRCA	TCGA-BH-A1FG	MAMLD1	SNP	Splice_Site	23	149613879	G	A	44	56
BRCA	TCGA-BH-A1FG	YIPF6	SNP	Silent	23	67741223	A	G	1	48
BRCA	TCGA-BH-A1FG	PCDHGA3	SNP	Silent	5	140725274	C	T	19	45
BRCA	TCGA-BH-A1FG	MAP3K1	DEL	Frame_Shift_Del	5	56171109	CTGTCTA	-	24	94
BRCA	TCGA-BH-A1FG	GPR98	SNP	Missense_Mutation	5	89986809	A	T	5	73
BRCA	TCGA-BH-A1FG	KHDC3L	SNP	Silent	6	74072569	G	T	45	49
BRCA	TCGA-BH-A1FG	PPP2R2A	SNP	Missense_Mutation	8	26227655	T	A	58	89
BRCA	TCGA-BH-A1FH	GATA3	INS	Frame_Shift_Ins	10	8115843	-	C	54	61
BRCA	TCGA-BH-A1FH	PSG7	SNP	Silent	19	43433645	G	A	40	33
BRCA	TCGA-BH-A1FH	BTBD3	SNP	Silent	20	11904305	C	T	32	64
BRCA	TCGA-BH-A1FH	PLCB4	SNP	Silent	20	9353021	G	A	41	54
BRCA	TCGA-BH-A1FH	MXRA5	SNP	Missense_Mutation	23	3228346	A	C	6	72
BRCA	TCGA-BH-A1FH	NSUN5	SNP	Missense_Mutation	7	72719078	C	T	28	50
BRCA	TCGA-BH-A1FJ	RPTN	SNP	Missense_Mutation	1	152127447	C	T	22	52
BRCA	TCGA-BH-A1FJ	RGS16	SNP	Missense_Mutation	1	182569531	G	A	43	99
BRCA	TCGA-BH-A1FJ	LRRIQ3	SNP	Splice_site	1	74621549	C	T	30	64
BRCA	TCGA-BH-A1FJ	XPNPEP1	SNP	Silent	10	111640657	G	A	33	53
BRCA	TCGA-BH-A1FJ	MUC15	SNP	Silent	11	26586728	C	T	19	35
BRCA	TCGA-BH-A1FJ	SYT9	SNP	Silent	11	7324487	C	T	24	65
BRCA	TCGA-BH-A1FJ	CDKN1B	INS	Frame_Shift_Ins	12	12870935	-	GC	35	54
BRCA	TCGA-BH-A1FJ	ACSS3	SNP	Missense_Mutation	12	81627233	G	T	46	61
BRCA	TCGA-BH-A1FJ	ZSCAN29	SNP	Missense_Mutation	15	43658586	C	T	26	78
BRCA	TCGA-BH-A1FJ	DNAH3	SNP	Missense_Mutation	16	21147728	G	A	40	49
BRCA	TCGA-BH-A1FJ	CDK12	SNP	Missense_Mutation	17	37618580	G	A	45	65
BRCA	TCGA-BH-A1FJ	MPO	SNP	Silent	17	56356745	G	A	34	63
BRCA	TCGA-BH-A1FJ	GADD45GIP1	SNP	Missense_Mutation	19	13067699	C	T	31	52
BRCA	TCGA-BH-A1FJ	PSG7	SNP	Silent	19	43430738	G	T	41	58
BRCA	TCGA-BH-A1FJ	AP2A1	SNP	Missense_Mutation	19	50302103	G	T	48	75
BRCA	TCGA-BH-A1FJ	SAFB	SNP	Silent	19	5641894	G	A	39	46
BRCA	TCGA-BH-A1FJ	FUT6	SNP	Nonsense_Mutation	19	5832191	G	A	38	53
BRCA	TCGA-BH-A1FJ	MUC16	SNP	Missense_Mutation	19	9000557	G	A	35	51
BRCA	TCGA-BH-A1FJ	BIRC6	DEL	In_Frame_Del	2	32640667	AAT	-	1	90
BRCA	TCGA-BH-A1FJ	SLC25A14	SNP	Missense_Mutation	23	129474313	G	A	40	69
BRCA	TCGA-BH-A1FJ	SPRY3	SNP	Missense_Mutation	23	155003723	C	T	23	56
BRCA	TCGA-BH-A1FJ	KIAA1257	SNP	Silent	3	128706484	G	A	40	31
BRCA	TCGA-BH-A1FJ	GNAI2	SNP	Missense_Mutation	3	50289959	C	T	22	50
BRCA	TCGA-BH-A1FJ	DNAH12	SNP	Silent	3	57443861	G	A	40	53
BRCA	TCGA-BH-A1FJ	CADM2	SNP	Missense_Mutation	3	86115884	C	A	28	100
BRCA	TCGA-BH-A1FJ	TTC23L	SNP	Missense_Mutation	5	34863073	G	A	37	48
BRCA	TCGA-BH-A1FJ	UGT3A1	SNP	Missense_Mutation	5	35954396	C	T	22	66
BRCA	TCGA-BH-A1FJ	DST	SNP	Missense_Mutation	6	56333793	A	T	9	66
BRCA	TCGA-BH-A1FJ	CNTNAP2	SNP	Missense_Mutation	7	147183037	A	C	5	78
BRCA	TCGA-BH-A1FJ	ARHGAP39	SNP	Silent	8	145772934	G	A	42	64
BRCA	TCGA-BH-A1FJ	CA1	SNP	Missense_Mutation	8	86242048	A	C	1	74
BRCA	TCGA-BH-A1FL	CASZ1	SNP	Missense_Mutation	1	10714015	G	A	37	100
BRCA	TCGA-BH-A1FL	GON4L	SNP	Missense_Mutation	1	155734834	G	A	45	99
BRCA	TCGA-BH-A1FL	NPAT	SNP	Silent	11	108032567	C	T	32	52
BRCA	TCGA-BH-A1FL	BCL9L	SNP	Missense_Mutation	11	118779066	C	T	22	74
BRCA	TCGA-BH-A1FL	EML3	SNP	Missense_Mutation	11	62378386	G	A	39	28
BRCA	TCGA-BH-A1FL	INO80	SNP	Missense_Mutation	15	41388029	G	A	34	81
BRCA	TCGA-BH-A1FL	CDH8	SNP	Silent	16	62055218	A	G	11	70
BRCA	TCGA-BH-A1FL	CBFB	SNP	Missense_Mutation	16	67100608	T	G	62	60
BRCA	TCGA-BH-A1FL	SERPINF2	SNP	Missense_Mutation	17	1650702	T	C	50	83
BRCA	TCGA-BH-A1FL	IKZF3	SNP	Missense_Mutation	17	37988354	C	A	27	53
BRCA	TCGA-BH-A1FL	SPPL2C	SNP	Silent	17	43922347	C	T	27	46
BRCA	TCGA-BH-A1FL	LAMA1	SNP	Silent	18	6961630	G	A	37	49
BRCA	TCGA-BH-A1FL	CERS1	SNP	Silent	19	18994907	G	A	35	57
BRCA	TCGA-BH-A1FL	MEF2B	SNP	Missense_Mutation	19	19257410	G	A	39	2
BRCA	TCGA-BH-A1FL	C2orf18	SNP	Missense_Mutation	2	26997949	C	T	28	61
BRCA	TCGA-BH-A1FL	PPP3R1	SNP	Missense_Mutation	2	68413703	C	T	22	100
BRCA	TCGA-BH-A1FL	ADNP	INS	Frame_Shift_Ins	20	49509507	-	GTAA	47	98
BRCA	TCGA-BH-A1FL	MAGEA4	SNP	Missense_Mutation	23	151092941	C	T	27	39
BRCA	TCGA-BH-A1FL	DMD	SNP	Missense_Mutation	23	31200940	C	T	19	98
BRCA	TCGA-BH-A1FL	TBL1XR1	INS	Frame_Shift_Ins	3	176769295	-	TA	28	81
BRCA	TCGA-BH-A1FL	MUC4	SNP	Missense_Mutation	3	195506453	G	A	43	47
BRCA	TCGA-BH-A1FL	SETD5	SNP	Missense_Mutation	3	9495453	A	G	12	83
BRCA	TCGA-BH-A1FL	HIST1H2AM	SNP	Nonsense_Mutation	6	27860804	C	A	29	62
BRCA	TCGA-BH-A1FL	TNXB	SNP	Missense_Mutation	6	32024600	T	C	51	63
BRCA	TCGA-BH-A1FL	UNC5CL	SNP	Missense_Mutation	6	40996170	C	T	26	46
BRCA	TCGA-BH-A1FL	KCNQ5	SNP	Missense_Mutation	6	73787578	T	C	62	73
BRCA	TCGA-BH-A1FM	OR6K2	SNP	Missense_Mutation	1	158669983	T	C	59	52
BRCA	TCGA-BH-A1FM	NID1	SNP	Missense_Mutation	1	236143802	C	T	30	100
BRCA	TCGA-BH-A1FM	ABCA4	SNP	Missense_Mutation	1	94520718	C	A	29	100
BRCA	TCGA-BH-A1FM	ANKRD30A	SNP	Nonsense_Mutation	10	37508553	G	T	37	54
BRCA	TCGA-BH-A1FM	CCAR1	SNP	Nonsense_Mutation	10	70507134	C	T	29	97
BRCA	TCGA-BH-A1FM	EED	SNP	Missense_Mutation	11	85966327	G	A	45	94
BRCA	TCGA-BH-A1FM	RAB38	SNP	Silent	11	87908404	A	T	6	91
BRCA	TCGA-BH-A1FM	MMAB	SNP	Silent	12	109998898	C	T	32	66
BRCA	TCGA-BH-A1FM	STAT2	SNP	Missense_Mutation	12	56737619	C	A	28	46
BRCA	TCGA-BH-A1FM	FAM123A	SNP	Silent	13	25743949	C	T	29	51
BRCA	TCGA-BH-A1FM	MLNR	SNP	Silent	13	49796405	G	A	37	47
BRCA	TCGA-BH-A1FM	LMO7	SNP	Missense_Mutation	13	76395433	T	A	59	58
BRCA	TCGA-BH-A1FM	RTL1	SNP	Silent	14	101347322	T	G	59	45
BRCA	TCGA-BH-A1FM	RPS6KA5	SNP	Missense_Mutation	14	91356949	G	A	47	100
BRCA	TCGA-BH-A1FM	ZNF598	SNP	Missense_Mutation	16	2048316	C	T	31	91
BRCA	TCGA-BH-A1FM	KCNG4	SNP	Missense_Mutation	16	84270709	G	A	38	66
BRCA	TCGA-BH-A1FM	ELAC2	SNP	Missense_Mutation	17	12897815	C	T	32	62
BRCA	TCGA-BH-A1FM	ACBD4	SNP	Missense_Mutation	17	43213950	C	T	23	51
BRCA	TCGA-BH-A1FM	CHRNB1	SNP	Silent	17	7350401	C	T	31	48
BRCA	TCGA-BH-A1FM	ZNF700	SNP	Missense_Mutation	19	12060223	C	G	31	52
BRCA	TCGA-BH-A1FM	CACNA1A	SNP	Missense_Mutation	19	13565940	G	T	44	97
BRCA	TCGA-BH-A1FM	RYR1	SNP	Silent	19	39075687	C	T	31	50
BRCA	TCGA-BH-A1FM	NLRP5	SNP	Silent	19	56515226	C	G	32	53
BRCA	TCGA-BH-A1FM	CD28	SNP	Missense_Mutation	2	204599579	C	T	23	66
BRCA	TCGA-BH-A1FM	FEZ2	SNP	Silent	2	36810595	G	C	33	51
BRCA	TCGA-BH-A1FM	PLXNB2	SNP	Missense_Mutation	22	50719361	C	T	31	96
BRCA	TCGA-BH-A1FM	ATP2B3	SNP	Missense_Mutation	23	152807837	G	A	37	96
BRCA	TCGA-BH-A1FM	DCAF8L1	SNP	Missense_Mutation	23	27997704	G	T	44	51
BRCA	TCGA-BH-A1FM	HUWE1	SNP	Missense_Mutation	23	53588774	G	A	38	80
BRCA	TCGA-BH-A1FM	ITIH6	SNP	Missense_Mutation	23	54817311	G	A	47	54
BRCA	TCGA-BH-A1FM	TNIK	SNP	Silent	3	170784390	T	C	52	65
BRCA	TCGA-BH-A1FM	FOXP1	SNP	Silent	3	71161786	T	C	59	38
BRCA	TCGA-BH-A1FM	FAT4	SNP	Missense_Mutation	4	126328230	A	C	9	92
BRCA	TCGA-BH-A1FM	GLRA3	SNP	Splice_Site	4	175709965	A	C	14	88
BRCA	TCGA-BH-A1FM	KCTD8	INS	Frame_Shift_Ins	4	44177076	-	A	61	68
BRCA	TCGA-BH-A1FM	SLC2A9	DEL	Frame_Shift_Del	4	9836533	GCAAAGTTGGAGAG	-	34	62
BRCA	TCGA-BH-A1FM	PCDHA1	SNP	Missense_Mutation	5	140167416	G	T	34	59
BRCA	TCGA-BH-A1FM	KIF4B	SNP	Missense_Mutation	5	154395548	C	T	26	68
BRCA	TCGA-BH-A1FM	HEATR7B2	SNP	Missense_Mutation	5	41049479	C	A	28	39
BRCA	TCGA-BH-A1FM	F2R	SNP	Missense_Mutation	5	76028288	C	G	32	51
BRCA	TCGA-BH-A1FM	ARSK	SNP	Missense_Mutation	5	94936385	G	A	47	55
BRCA	TCGA-BH-A1FM	EYS	SNP	Silent	6	65767562	G	T	47	49
BRCA	TCGA-BH-A1FM	HECW1	SNP	Missense_Mutation	7	43506115	C	T	27	84
BRCA	TCGA-BH-A1FM	SEPT14	SNP	Missense_Mutation	7	55914275	C	T	17	90
BRCA	TCGA-BH-A1FM	SEMA3C	DEL	In_Frame_Del	7	80418832	CTC	-	28	88
BRCA	TCGA-BH-A1FM	ZNF804B	SNP	Missense_Mutation	7	88956679	C	T	19	61
BRCA	TCGA-BH-A1FM	ADAM18	SNP	Silent	8	39495190	C	T	30	51
BRCA	TCGA-BH-A1FM	OR13C8	SNP	Missense_Mutation	9	107332253	G	C	45	56
BRCA	TCGA-BH-A1FM	SEC16A	SNP	Missense_Mutation	9	139368956	C	G	29	66
BRCA	TCGA-BH-A1FM	SEC16A	SNP	Missense_Mutation	9	139369265	C	G	32	50
BRCA	TCGA-BH-A1FM	SEC16A	SNP	Missense_Mutation	9	139369436	C	T	29	84
BRCA	TCGA-BH-A1FM	IFNA6	SNP	Missense_Mutation	9	21350623	G	C	45	56
BRCA	TCGA-BH-A1FN	MAB21L3	SNP	Missense_Mutation	1	116666885	G	C	33	71
BRCA	TCGA-BH-A1FN	FLG2	SNP	Missense_Mutation	1	152326689	A	T	2	44
BRCA	TCGA-BH-A1FN	FCER1A	SNP	Splice_Site	1	159275777	G	A	33	73
BRCA	TCGA-BH-A1FN	XCL1	SNP	Missense_Mutation	1	168549314	A	C	3	59
BRCA	TCGA-BH-A1FN	FMO1	SNP	Missense_Mutation	1	171254413	C	G	29	52
BRCA	TCGA-BH-A1FN	SHCBP1L	SNP	Silent	1	182908337	C	G	29	60
BRCA	TCGA-BH-A1FN	HMCN1	SNP	Missense_Mutation	1	186114610	A	T	14	79
BRCA	TCGA-BH-A1FN	F13B	SNP	Missense_Mutation	1	197031086	C	A	28	59
BRCA	TCGA-BH-A1FN	ASPM	SNP	Missense_Mutation	1	197086988	C	G	32	54
BRCA	TCGA-BH-A1FN	PGBD5	SNP	Silent	1	230459309	G	A	45	88
BRCA	TCGA-BH-A1FN	CSMD2	SNP	Missense_Mutation	1	33999492	G	A	35	71
BRCA	TCGA-BH-A1FN	MACF1	SNP	Missense_Mutation	1	39895636	G	C	45	88
BRCA	TCGA-BH-A1FN	IPP	SNP	Missense_Mutation	1	46206927	G	A	45	49
BRCA	TCGA-BH-A1FN	PDE4B	SNP	Missense_Mutation	1	66384309	G	C	45	64
BRCA	TCGA-BH-A1FN	ADAM12	SNP	Missense_Mutation	10	127789701	A	G	7	92
BRCA	TCGA-BH-A1FN	PDSS1	SNP	Missense_Mutation	10	27024211	G	A	38	100
BRCA	TCGA-BH-A1FN	KIF5B	DEL	In_Frame_Del	10	32337446	ACTGGA	-	10	65
BRCA	TCGA-BH-A1FN	USP54	SNP	Silent	10	75258420	G	A	45	53
BRCA	TCGA-BH-A1FN	PTEN	DEL	Splice_Site	10	89692976	TTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAG	-	64	88
BRCA	TCGA-BH-A1FN	PPP1R3C	DEL	Frame_Shift_Del	10	93390161	CAGA	-	21	67
BRCA	TCGA-BH-A1FN	RASSF7	SNP	Silent	11	563350	G	A	45	41
BRCA	TCGA-BH-A1FN	SLC43A1	SNP	Missense_Mutation	11	57265233	C	A	30	69
BRCA	TCGA-BH-A1FN	OR52B2	SNP	Silent	11	6191248	G	A	34	52
BRCA	TCGA-BH-A1FN	NUDT22	SNP	Silent	11	63995111	C	T	21	61
BRCA	TCGA-BH-A1FN	NRXN2	SNP	Missense_Mutation	11	64435963	G	T	44	66
BRCA	TCGA-BH-A1FN	LRRK2	SNP	Missense_Mutation	12	40681167	C	A	20	57
BRCA	TCGA-BH-A1FN	APOF	SNP	Missense_Mutation	12	56755197	C	G	32	58
BRCA	TCGA-BH-A1FN	SLC2A3	SNP	Missense_Mutation	12	8078450	G	A	36	87
BRCA	TCGA-BH-A1FN	PTPRQ	SNP	Missense_Mutation	12	81004320	A	G	12	53
BRCA	TCGA-BH-A1FN	A2M	SNP	Nonsense_Mutation	12	9254262	G	T	48	69
BRCA	TCGA-BH-A1FN	GRK1	SNP	Missense_Mutation	13	114321853	G	A	38	67
BRCA	TCGA-BH-A1FN	RB1	SNP	Nonsense_Mutation	13	48916747	C	T	29	77
BRCA	TCGA-BH-A1FN	DIS3	SNP	Missense_Mutation	13	73345227	G	C	40	47
BRCA	TCGA-BH-A1FN	FSCB	SNP	Silent	14	44973863	A	C	5	58
BRCA	TCGA-BH-A1FN	C15orf55	SNP	Missense_Mutation	15	34648639	G	C	33	47
BRCA	TCGA-BH-A1FN	RAD51	SNP	Missense_Mutation	15	40998407	C	A	29	60
BRCA	TCGA-BH-A1FN	TGM7	SNP	Silent	15	43569149	G	C	45	73
BRCA	TCGA-BH-A1FN	ZSCAN29	SNP	Missense_Mutation	15	43661287	C	A	32	77
BRCA	TCGA-BH-A1FN	KIAA0556	SNP	Missense_Mutation	16	27761615	A	T	2	91
BRCA	TCGA-BH-A1FN	ZNF48	SNP	Silent	16	30408955	G	A	45	59
BRCA	TCGA-BH-A1FN	ZNF629	SNP	Silent	16	30794530	C	T	19	48
BRCA	TCGA-BH-A1FN	KIFC3	INS	Frame_Shift_Ins	16	57803851	-	A	45	72
BRCA	TCGA-BH-A1FN	CLEC18B	SNP	Missense_Mutation	16	74446736	C	T	30	77
BRCA	TCGA-BH-A1FN	NBR1	SNP	Nonsense_Mutation	17	41349048	G	T	45	83
BRCA	TCGA-BH-A1FN	EFCAB13	SNP	Missense_Mutation	17	45421643	C	G	32	67
BRCA	TCGA-BH-A1FN	SGCA	SNP	Silent	17	48247653	G	A	47	53
BRCA	TCGA-BH-A1FN	KIAA0195	SNP	Missense_Mutation	17	73484883	C	A	22	96
BRCA	TCGA-BH-A1FN	RNF157	SNP	Splice_site	17	74208563	C	T	30	100
BRCA	TCGA-BH-A1FN	TP53	SNP	Missense_Mutation	17	7577099	C	G	32	95
BRCA	TCGA-BH-A1FN	DUS1L	SNP	Missense_Mutation	17	80018821	C	T	30	61
BRCA	TCGA-BH-A1FN	ZBTB7C	SNP	Missense_Mutation	18	45566931	A	G	12	65
BRCA	TCGA-BH-A1FN	PRKCSH	SNP	Missense_Mutation	19	11557971	C	T	30	64
BRCA	TCGA-BH-A1FN	ZNF682	SNP	Missense_Mutation	19	20135146	G	C	33	31
BRCA	TCGA-BH-A1FN	ZNF91	SNP	Missense_Mutation	19	23542876	C	T	29	47
BRCA	TCGA-BH-A1FN	CHST8	SNP	Silent	19	34180251	C	T	29	50
BRCA	TCGA-BH-A1FN	NPHS1	SNP	Silent	19	36332657	G	T	43	71
BRCA	TCGA-BH-A1FN	SPTBN4	SNP	Missense_Mutation	19	41066253	C	A	18	66
BRCA	TCGA-BH-A1FN	ZNF541	SNP	Missense_Mutation	19	48052598	C	T	28	80
BRCA	TCGA-BH-A1FN	SYT3	SNP	Nonsense_Mutation	19	51135658	C	A	29	69
BRCA	TCGA-BH-A1FN	MTX2	SNP	Splice_Site	2	177188193	G	A	44	83
BRCA	TCGA-BH-A1FN	TTN	SNP	Missense_Mutation	2	179584070	A	G	2	94
BRCA	TCGA-BH-A1FN	DNAH7	SNP	Missense_Mutation	2	196619103	C	T	29	100
BRCA	TCGA-BH-A1FN	CRYGC	SNP	Silent	2	208994511	C	T	30	53
BRCA	TCGA-BH-A1FN	LRRFIP1	SNP	Silent	2	238672126	T	C	51	36
BRCA	TCGA-BH-A1FN	SULT6B1	SNP	Missense_Mutation	2	37415655	T	A	64	49
BRCA	TCGA-BH-A1FN	ATP6V1B1	SNP	Splice_Site	2	71191567	G	C	33	77
BRCA	TCGA-BH-A1FN	POLR1A	SNP	Silent	2	86308729	G	A	35	46
BRCA	TCGA-BH-A1FN	CPSF3	SNP	Missense_Mutation	2	9613060	G	C	33	76
BRCA	TCGA-BH-A1FN	RRBP1	SNP	Missense_Mutation	20	17640650	G	T	42	92
BRCA	TCGA-BH-A1FN	CHD6	SNP	Silent	20	40043946	G	C	45	66
BRCA	TCGA-BH-A1FN	CDH22	SNP	Silent	20	44869708	C	T	21	69
BRCA	TCGA-BH-A1FN	ZNF831	SNP	Silent	20	57768189	T	G	55	27
BRCA	TCGA-BH-A1FN	PWP2	SNP	Missense_Mutation	21	45542081	G	C	45	78
BRCA	TCGA-BH-A1FN	ARVCF	SNP	Missense_Mutation	22	19966462	G	T	42	94
BRCA	TCGA-BH-A1FN	CHKB	SNP	Nonsense_Mutation	22	51019010	C	A	29	71
BRCA	TCGA-BH-A1FN	DOCK11	SNP	Splice_Site	23	117722098	A	T	15	87
BRCA	TCGA-BH-A1FN	DMD	SNP	Missense_Mutation	23	32380914	C	G	32	60
BRCA	TCGA-BH-A1FN	ARR3	DEL	Frame_Shift_Del	23	69496109	AT	-	4	83
BRCA	TCGA-BH-A1FN	ARR3	DEL	Frame_Shift_Del	23	69496112	CCTACCCCTT	-	26	67
BRCA	TCGA-BH-A1FN	ALDH1L1	SNP	Silent	3	125855661	G	A	37	51
BRCA	TCGA-BH-A1FN	CEP63	SNP	Missense_Mutation	3	134264532	C	G	32	57
BRCA	TCGA-BH-A1FN	CADPS	SNP	Missense_Mutation	3	62648054	C	T	29	95
BRCA	TCGA-BH-A1FN	LRIT3	SNP	Missense_Mutation	4	110791367	G	C	33	64
BRCA	TCGA-BH-A1FN	ANK2	SNP	Silent	4	114177049	C	G	30	48
BRCA	TCGA-BH-A1FN	FHDC1	SNP	Missense_Mutation	4	153875460	G	C	33	74
BRCA	TCGA-BH-A1FN	EVC2	SNP	Missense_Mutation	4	5627522	A	G	11	78
BRCA	TCGA-BH-A1FN	MAN2B2	SNP	Missense_Mutation	4	6612888	G	C	36	49
BRCA	TCGA-BH-A1FN	DSPP	SNP	Missense_Mutation	4	88534180	A	G	11	58
BRCA	TCGA-BH-A1FN	GRID2	SNP	Missense_Mutation	4	94159585	C	T	21	69
BRCA	TCGA-BH-A1FN	IRF1	SNP	Missense_Mutation	5	131822339	G	A	36	63
BRCA	TCGA-BH-A1FN	MYO10	SNP	Missense_Mutation	5	16877797	C	G	32	53
BRCA	TCGA-BH-A1FN	STK10	SNP	Missense_Mutation	5	171517330	G	A	40	59
BRCA	TCGA-BH-A1FN	ADAMTS2	SNP	Missense_Mutation	5	178549700	G	C	33	56
BRCA	TCGA-BH-A1FN	NADKD1	SNP	Missense_Mutation	5	36195293	T	G	50	62
BRCA	TCGA-BH-A1FN	NIPBL	SNP	Missense_Mutation	5	36976318	T	G	64	69
BRCA	TCGA-BH-A1FN	L3MBTL3	SNP	Missense_Mutation	6	130374131	G	C	45	80
BRCA	TCGA-BH-A1FN	VNN2	SNP	Missense_Mutation	6	133078597	G	A	47	85
BRCA	TCGA-BH-A1FN	KIAA1244	SNP	Missense_Mutation	6	138582743	C	T	29	85
BRCA	TCGA-BH-A1FN	COL21A1	DEL	Frame_Shift_Del	6	56044762	GGGTAGTCACTATATTGAAC	-	35	85
BRCA	TCGA-BH-A1FN	UFSP1	SNP	Missense_Mutation	7	100486535	C	G	29	57
BRCA	TCGA-BH-A1FN	MUC12	SNP	Missense_Mutation	7	100635040	C	T	29	58
BRCA	TCGA-BH-A1FN	GPR22	SNP	Silent	7	107114853	T	C	60	66
BRCA	TCGA-BH-A1FN	DGKI	SNP	Missense_Mutation	7	137206651	C	T	29	94
BRCA	TCGA-BH-A1FN	KIAA1549	SNP	Silent	7	138601660	G	A	39	43
BRCA	TCGA-BH-A1FN	TNS3	SNP	Silent	7	47440386	G	A	46	71
BRCA	TCGA-BH-A1FN	PKD1L1	SNP	Missense_Mutation	7	47835714	C	G	32	64
BRCA	TCGA-BH-A1FN	ASL	SNP	Silent	7	65546942	C	T	29	51
BRCA	TCGA-BH-A1FN	CROT	SNP	Silent	7	87011255	G	A	45	48
BRCA	TCGA-BH-A1FN	ENPP2	SNP	Missense_Mutation	8	120602841	C	G	29	97
BRCA	TCGA-BH-A1FN	CPQ	SNP	Missense_Mutation	8	98155289	C	G	21	94
BRCA	TCGA-BH-A1FN	BAAT	SNP	Silent	9	104125001	G	A	45	52
BRCA	TCGA-BH-A1FN	IKBKAP	SNP	Silent	9	111674596	C	G	30	60
BRCA	TCGA-BH-A1FN	DFNB31	SNP	Silent	9	117168684	G	A	39	41
BRCA	TCGA-BH-A1FN	SETX	SNP	Missense_Mutation	9	135205210	A	C	4	79
BRCA	TCGA-BH-A1FN	DENND4C	SNP	Splice_site	9	19331976	G	A	41	98
BRCA	TCGA-BH-A1FR	PRAMEF10	SNP	Missense_Mutation	1	12954921	A	G	10	31
BRCA	TCGA-BH-A1FR	MYOM3	SNP	Silent	1	24388443	T	C	55	29
BRCA	TCGA-BH-A1FR	EP400NL	SNP	Missense_Mutation	12	132593193	C	G	32	88
BRCA	TCGA-BH-A1FR	VWF	SNP	Missense_Mutation	12	6167090	C	T	27	50
BRCA	TCGA-BH-A1FR	POSTN	SNP	Missense_Mutation	13	38154780	C	T	23	73
BRCA	TCGA-BH-A1FR	GOLGA6L2	SNP	Missense_Mutation	15	23685200	C	T	24	54
BRCA	TCGA-BH-A1FR	GLCE	SNP	Splice_site	15	69553426	G	T	44	99
BRCA	TCGA-BH-A1FR	SOLH	SNP	Missense_Mutation	16	602903	G	T	47	99
BRCA	TCGA-BH-A1FR	CCL3L1	SNP	Missense_Mutation	17	34624285	C	T	19	48
BRCA	TCGA-BH-A1FR	STAC2	SNP	Missense_Mutation	17	37374353	C	T	27	85
BRCA	TCGA-BH-A1FR	LLGL2	SNP	Missense_Mutation	17	73566281	A	C	6	91
BRCA	TCGA-BH-A1FR	ZNF24	SNP	Missense_Mutation	18	32919834	A	C	11	72
BRCA	TCGA-BH-A1FR	HIPK4	SNP	Silent	19	40889792	G	A	40	37
BRCA	TCGA-BH-A1FR	SULT1C2	SNP	Missense_Mutation	2	108921678	G	A	33	65
BRCA	TCGA-BH-A1FR	IDH1	SNP	Missense_Mutation	2	209113113	G	A	37	82
BRCA	TCGA-BH-A1FR	SSTR3	SNP	Missense_Mutation	22	37603605	T	A	63	79
BRCA	TCGA-BH-A1FR	DCAF12L2	SNP	Missense_Mutation	23	125298568	C	G	22	86
BRCA	TCGA-BH-A1FR	VPS52	SNP	Missense_Mutation	6	33231274	T	C	52	64
BRCA	TCGA-BH-A1FR	SPAG11A	SNP	Nonsense_Mutation	8	7718209	C	T	25	54
BRCA	TCGA-BH-A1FU	MRPL20	SNP	Missense_Mutation	1	1337496	T	G	56	45
BRCA	TCGA-BH-A1FU	SPTA1	SNP	Missense_Mutation	1	158637768	T	G	51	50
BRCA	TCGA-BH-A1FU	F11R	SNP	Missense_Mutation	1	160969973	T	C	60	77
BRCA	TCGA-BH-A1FU	FAM5B	SNP	Missense_Mutation	1	177250489	G	A	39	98
BRCA	TCGA-BH-A1FU	SERTAD4	SNP	Missense_Mutation	1	210415429	T	C	56	56
BRCA	TCGA-BH-A1FU	THRAP3	SNP	Missense_Mutation	1	36751975	G	C	44	81
BRCA	TCGA-BH-A1FU	FIBIN	SNP	Silent	11	27016367	G	T	47	60
BRCA	TCGA-BH-A1FU	NT5DC3	SNP	Missense_Mutation	12	104208797	T	A	50	91
BRCA	TCGA-BH-A1FU	CNPY2	SNP	Missense_Mutation	12	56705098	C	T	27	83
BRCA	TCGA-BH-A1FU	SLC25A30	SNP	Silent	13	45983070	G	A	33	55
BRCA	TCGA-BH-A1FU	TEP1	SNP	Missense_Mutation	14	20871929	G	A	37	73
BRCA	TCGA-BH-A1FU	HIRIP3	SNP	Missense_Mutation	16	30005704	C	A	24	52
BRCA	TCGA-BH-A1FU	GRIN2C	SNP	Silent	17	72850911	G	A	41	56
BRCA	TCGA-BH-A1FU	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-BH-A1FU	KRI1	INS	Frame_Shift_Ins	19	10676487	-	C	46	26
BRCA	TCGA-BH-A1FU	TIMM50	SNP	Splice_site	19	39973556	G	A	35	68
BRCA	TCGA-BH-A1FU	CGB	SNP	Silent	19	49526242	G	C	43	70
BRCA	TCGA-BH-A1FU	HECW2	SNP	Missense_Mutation	2	197105255	C	A	32	98
BRCA	TCGA-BH-A1FU	BRWD1	SNP	Missense_Mutation	21	40568382	G	C	45	86
BRCA	TCGA-BH-A1FU	EOMES	SNP	Missense_Mutation	3	27760081	T	C	50	90
BRCA	TCGA-BH-A1FU	FNIP1	SNP	Missense_Mutation	5	130857147	G	C	33	99
BRCA	TCGA-BH-A1FU	PCDHGB4	SNP	Silent	5	140769344	C	T	27	44
BRCA	TCGA-BH-A1FU	DNAH8	SNP	Nonsense_Mutation	6	38816466	T	A	49	55
BRCA	TCGA-BH-A1FU	KLHL7	SNP	Missense_Mutation	7	23207557	A	G	9	90
BRCA	TCGA-BH-A1FU	BAZ1B	INS	Frame_Shift_Ins	7	72856553	-	T	20	53
BRCA	TCGA-BH-A1FU	RAD54B	SNP	Missense_Mutation	8	95403934	C	T	25	100
BRCA	TCGA-BH-A1FU	PTBP3	SNP	Missense_Mutation	9	114997150	T	A	49	84
BRCA	TCGA-BH-A201	TNFRSF9	SNP	Missense_Mutation	1	7980932	C	T	31	67
BRCA	TCGA-BH-A201	DDX21	SNP	Missense_Mutation	10	70737326	A	G	1	60
BRCA	TCGA-BH-A201	SIK3	SNP	Splice_Site	11	116766967	A	G	14	87
BRCA	TCGA-BH-A201	DDX11L8	SNP	Silent	12	92915	C	G	17	76
BRCA	TCGA-BH-A201	TARSL2	SNP	Missense_Mutation	15	102263346	C	T	32	67
BRCA	TCGA-BH-A201	KIAA0430	SNP	Missense_Mutation	16	15702158	T	C	51	90
BRCA	TCGA-BH-A201	RALBP1	SNP	Silent	18	9524597	C	T	25	56
BRCA	TCGA-BH-A201	NUP35	SNP	Missense_Mutation	2	184023015	C	A	32	100
BRCA	TCGA-BH-A201	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	TCGA-BH-A201	GPR55	SNP	Missense_Mutation	2	231775625	A	G	7	68
BRCA	TCGA-BH-A201	XDH	SNP	Missense_Mutation	2	31588379	G	A	39	77
BRCA	TCGA-BH-A201	DPM1	SNP	Missense_Mutation	20	49575041	C	T	20	53
BRCA	TCGA-BH-A201	ODZ1	SNP	Silent	23	123514548	C	G	30	37
BRCA	TCGA-BH-A201	PDZD4	SNP	Missense_Mutation	23	153073934	G	C	48	51
BRCA	TCGA-BH-A201	PRKX	SNP	Missense_Mutation	23	3544506	G	T	33	69
BRCA	TCGA-BH-A201	ARHGEF9	SNP	Missense_Mutation	23	62875545	C	T	29	77
BRCA	TCGA-BH-A201	PDGFRB	SNP	Missense_Mutation	5	149513212	A	G	7	88
BRCA	TCGA-BH-A201	C5orf27	SNP	Missense_Mutation	5	95194554	T	A	55	27
BRCA	TCGA-BH-A201	PCOLCE	SNP	Silent	7	100205270	G	A	37	42
BRCA	TCGA-BH-A201	LAMC3	SNP	Missense_Mutation	9	133917083	G	A	46	96
BRCA	TCGA-BH-A202	MOV10	SNP	Missense_Mutation	1	113231673	T	G	59	50
BRCA	TCGA-BH-A202	SMG5	SNP	Missense_Mutation	1	156237972	C	T	17	67
BRCA	TCGA-BH-A202	USH2A	SNP	Missense_Mutation	1	216219877	G	T	41	50
BRCA	TCGA-BH-A202	GDF2	SNP	Missense_Mutation	10	48413719	C	A	20	55
BRCA	TCGA-BH-A202	POLA2	SNP	Silent	11	65064614	G	A	45	63
BRCA	TCGA-BH-A202	RPS6KB2	SNP	Missense_Mutation	11	67202569	G	A	38	68
BRCA	TCGA-BH-A202	RFX4	SNP	Missense_Mutation	12	107080750	A	C	10	63
BRCA	TCGA-BH-A202	MON2	SNP	Missense_Mutation	12	62965209	C	G	24	100
BRCA	TCGA-BH-A202	RB1	SNP	Nonsense_Mutation	13	48934189	C	A	29	83
BRCA	TCGA-BH-A202	MAPK6	SNP	Missense_Mutation	15	52350913	G	C	40	100
BRCA	TCGA-BH-A202	PLLP	DEL	In_Frame_Del	16	57290919	ATC	-	12	85
BRCA	TCGA-BH-A202	CES2	SNP	Missense_Mutation	16	66974233	C	T	23	63
BRCA	TCGA-BH-A202	TP53	SNP	Nonsense_Mutation	17	7578212	G	A	37	66
BRCA	TCGA-BH-A202	ZNF224	SNP	Missense_Mutation	19	44612139	C	T	29	50
BRCA	TCGA-BH-A202	RUNX1	INS	Frame_Shift_Ins	21	36206776	-	G	59	66
BRCA	TCGA-BH-A202	PPM1F	SNP	Missense_Mutation	22	22277563	C	T	23	40
BRCA	TCGA-BH-A202	OFD1	SNP	Missense_Mutation	23	13781897	G	T	42	56
BRCA	TCGA-BH-A202	PRICKLE3	DEL	Frame_Shift_Del	23	49040116	GT	-	36	69
BRCA	TCGA-BH-A202	PLXNA1	SNP	Missense_Mutation	3	126730837	G	A	40	63
BRCA	TCGA-BH-A202	DNAJC13	SNP	Missense_Mutation	3	132166751	A	G	2	78
BRCA	TCGA-BH-A202	PIK3CA	SNP	Missense_Mutation	3	178922325	A	T	9	89
BRCA	TCGA-BH-A202	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A202	SYNPR	SNP	Silent	3	63594947	C	T	25	66
BRCA	TCGA-BH-A202	PPIL4	SNP	Missense_Mutation	6	149847870	C	T	17	99
BRCA	TCGA-BH-A202	ATXN1	SNP	Missense_Mutation	6	16327705	G	C	48	71
BRCA	TCGA-BH-A202	TAS2R38	SNP	Silent	7	141673070	G	T	33	33
BRCA	TCGA-BH-A202	EPPK1	SNP	Silent	8	144945136	G	A	40	48
BRCA	TCGA-BH-A202	MSR1	SNP	Missense_Mutation	8	16035439	G	T	33	77
BRCA	TCGA-BH-A203	KCNH1	SNP	Splice_site	1	210948691	C	A	24	100
BRCA	TCGA-BH-A203	HSPG2	SNP	Silent	1	22174305	G	A	37	48
BRCA	TCGA-BH-A203	GRHL3	SNP	Missense_Mutation	1	24668645	C	T	29	100
BRCA	TCGA-BH-A203	OR11L1	SNP	Missense_Mutation	1	248004332	G	C	33	53
BRCA	TCGA-BH-A203	OR11L1	SNP	Silent	1	248004656	G	A	41	55
BRCA	TCGA-BH-A203	OR11L1	SNP	Missense_Mutation	1	248004829	G	C	35	55
BRCA	TCGA-BH-A203	OR2L5	SNP	Missense_Mutation	1	248185954	G	T	35	48
BRCA	TCGA-BH-A203	LDB1	SNP	Silent	10	103867910	G	A	46	100
BRCA	TCGA-BH-A203	CTBP2	SNP	Silent	10	126683158	G	A	43	57
BRCA	TCGA-BH-A203	ARHGAP21	SNP	Missense_Mutation	10	24896748	G	T	43	84
BRCA	TCGA-BH-A203	ZC3H12C	SNP	Nonsense_Mutation	11	110030002	T	A	61	90
BRCA	TCGA-BH-A203	NADSYN1	SNP	Silent	11	71185527	C	T	19	50
BRCA	TCGA-BH-A203	MLL2	SNP	Missense_Mutation	12	49426774	T	A	55	56
BRCA	TCGA-BH-A203	PMEL	SNP	Missense_Mutation	12	56351845	C	T	22	94
BRCA	TCGA-BH-A203	NXPH4	SNP	Silent	12	57619524	C	T	31	46
BRCA	TCGA-BH-A203	CDK17	DEL	Frame_Shift_Del	12	96688890	TACAGAAACAGC	-	57	67
BRCA	TCGA-BH-A203	TFDP1	SNP	Missense_Mutation	13	114292199	G	A	35	69
BRCA	TCGA-BH-A203	CDX2	SNP	Silent	13	28537414	C	T	27	64
BRCA	TCGA-BH-A203	RBM26	SNP	Silent	13	79896574	G	A	45	63
BRCA	TCGA-BH-A203	ZFP36L1	DEL	Frame_Shift_Del	14	69259611	TTCGCTCAAGTCGAAGATG	-	56	57
BRCA	TCGA-BH-A203	CEP128	SNP	Missense_Mutation	14	81329162	T	C	62	83
BRCA	TCGA-BH-A203	ATP10A	SNP	Missense_Mutation	15	25953373	C	G	24	98
BRCA	TCGA-BH-A203	PALB2	SNP	Nonsense_Mutation	16	23614905	G	A	45	82
BRCA	TCGA-BH-A203	FBXL8	SNP	Silent	16	67196943	G	A	38	48
BRCA	TCGA-BH-A203	DPEP3	SNP	Missense_Mutation	16	68009816	G	T	35	61
BRCA	TCGA-BH-A203	KLHL36	SNP	Silent	16	84690716	G	A	47	56
BRCA	TCGA-BH-A203	RNF213	SNP	Silent	17	78358925	A	G	3	48
BRCA	TCGA-BH-A203	FASN	SNP	Splice_Site	17	80047261	C	A	24	87
BRCA	TCGA-BH-A203	MYH14	SNP	Missense_Mutation	19	50753006	C	T	27	77
BRCA	TCGA-BH-A203	SLC27A5	SNP	Missense_Mutation	19	59021339	C	T	23	51
BRCA	TCGA-BH-A203	GLI2	SNP	Silent	2	121708927	C	T	19	58
BRCA	TCGA-BH-A203	TTN	SNP	Nonsense_Mutation	2	179436920	G	A	39	68
BRCA	TCGA-BH-A203	PNPT1	SNP	Missense_Mutation	2	55870522	C	T	17	50
BRCA	TCGA-BH-A203	XPO1	SNP	Missense_Mutation	2	61719472	C	T	31	100
BRCA	TCGA-BH-A203	CDK5RAP1	SNP	Missense_Mutation	20	31984736	C	A	32	54
BRCA	TCGA-BH-A203	PREX1	SNP	Missense_Mutation	20	47251303	C	T	23	57
BRCA	TCGA-BH-A203	NEFH	SNP	Missense_Mutation	22	29885829	G	A	37	65
BRCA	TCGA-BH-A203	EIF3D	SNP	Silent	22	36907704	G	A	38	47
BRCA	TCGA-BH-A203	GLA	SNP	Missense_Mutation	23	100662776	G	A	40	76
BRCA	TCGA-BH-A203	GPRASP1	SNP	Missense_Mutation	23	101912271	T	G	55	61
BRCA	TCGA-BH-A203	IGSF1	SNP	Missense_Mutation	23	130411977	G	T	46	73
BRCA	TCGA-BH-A203	IRAK1	SNP	Missense_Mutation	23	153282465	A	T	14	54
BRCA	TCGA-BH-A203	GNL3L	SNP	Missense_Mutation	23	54567799	C	T	19	56
BRCA	TCGA-BH-A203	FAM123B	SNP	Missense_Mutation	23	63410049	C	T	26	55
BRCA	TCGA-BH-A203	AR	SNP	Silent	23	66766554	C	T	27	49
BRCA	TCGA-BH-A203	ATP2B2	SNP	Missense_Mutation	3	10370571	G	A	40	89
BRCA	TCGA-BH-A203	PLOD2	SNP	Missense_Mutation	3	145791114	C	T	19	59
BRCA	TCGA-BH-A203	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A203	IQCG	SNP	Silent	3	197659062	G	A	33	64
BRCA	TCGA-BH-A203	OXSM	SNP	Missense_Mutation	3	25833460	C	A	22	97
BRCA	TCGA-BH-A203	ARAP2	SNP	Missense_Mutation	4	36115810	T	C	51	71
BRCA	TCGA-BH-A203	N4BP2	SNP	Missense_Mutation	4	40144366	A	T	12	88
BRCA	TCGA-BH-A203	ARL15	SNP	Silent	5	53182436	C	T	29	51
BRCA	TCGA-BH-A203	COL9A1	SNP	Missense_Mutation	6	71004156	G	C	33	54
BRCA	TCGA-BH-A203	SLC17A5	SNP	Missense_Mutation	6	74346398	G	C	33	63
BRCA	TCGA-BH-A203	NRCAM	SNP	Silent	7	107820770	C	T	23	20
BRCA	TCGA-BH-A203	ZNF282	SNP	Missense_Mutation	7	148895716	G	A	40	55
BRCA	TCGA-BH-A203	GLI3	SNP	Missense_Mutation	7	42005234	A	C	11	72
BRCA	TCGA-BH-A203	PHYHIP	SNP	Silent	8	22084434	C	T	23	44
BRCA	TCGA-BH-A203	KIF12	SNP	Silent	9	116858679	G	A	45	53
BRCA	TCGA-BH-A203	CNTRL	SNP	Missense_Mutation	9	123935683	G	A	37	58
BRCA	TCGA-BH-A203	GAPVD1	SNP	Missense_Mutation	9	128064405	T	C	52	91
BRCA	TCGA-BH-A203	ST6GALNAC6	SNP	Nonsense_Mutation	9	130656839	G	C	45	54
BRCA	TCGA-BH-A204	SPEN	INS	Frame_Shift_Ins	1	16202935	-	TA	44	93
BRCA	TCGA-BH-A204	CD46	SNP	Missense_Mutation	1	207930364	T	G	55	67
BRCA	TCGA-BH-A204	AIDA	SNP	Silent	1	222849466	G	A	37	49
BRCA	TCGA-BH-A204	ZNF691	SNP	Missense_Mutation	1	43317408	A	G	6	62
BRCA	TCGA-BH-A204	RERE	SNP	Missense_Mutation	1	8617573	C	T	30	100
BRCA	TCGA-BH-A204	CPN1	SNP	Missense_Mutation	10	101823406	A	G	12	89
BRCA	TCGA-BH-A204	DYNC2H1	SNP	Missense_Mutation	11	103091479	G	T	44	100
BRCA	TCGA-BH-A204	DDI1	SNP	Missense_Mutation	11	103908332	C	T	31	92
BRCA	TCGA-BH-A204	USH1C	SNP	Missense_Mutation	11	17531172	G	T	35	53
BRCA	TCGA-BH-A204	MYBPC1	SNP	Silent	12	102045070	C	T	32	58
BRCA	TCGA-BH-A204	PSMB5	DEL	Frame_Shift_Del	14	23503966	GCCAGGCTCA	-	42	57
BRCA	TCGA-BH-A204	TJP1	SNP	Nonsense_Mutation	15	30024679	C	A	32	100
BRCA	TCGA-BH-A204	SLTM	SNP	Missense_Mutation	15	59186732	C	T	25	100
BRCA	TCGA-BH-A204	ZNF469	SNP	Missense_Mutation	16	88494721	T	A	51	48
BRCA	TCGA-BH-A204	MAP2K4	SNP	Missense_Mutation	17	12016616	G	T	36	94
BRCA	TCGA-BH-A204	AKAP1	SNP	Silent	17	55197673	C	T	17	50
BRCA	TCGA-BH-A204	ZNF180	SNP	Silent	19	44980904	A	T	11	41
BRCA	TCGA-BH-A204	PRMT1	SNP	Missense_Mutation	19	50183820	C	G	30	93
BRCA	TCGA-BH-A204	NBAS	SNP	Missense_Mutation	2	15307434	T	C	52	66
BRCA	TCGA-BH-A204	GRB14	SNP	Missense_Mutation	2	165378582	G	A	48	80
BRCA	TCGA-BH-A204	GLS	SNP	Missense_Mutation	2	191827682	C	T	23	35
BRCA	TCGA-BH-A204	OCSTAMP	SNP	Missense_Mutation	20	45173985	G	A	40	56
BRCA	TCGA-BH-A204	MORC4	SNP	Missense_Mutation	23	106221352	G	T	44	57
BRCA	TCGA-BH-A204	FAM127C	SNP	Missense_Mutation	23	134156443	A	C	11	52
BRCA	TCGA-BH-A204	FAM58A	SNP	Silent	23	152858123	A	G	5	49
BRCA	TCGA-BH-A204	ARAF	SNP	Missense_Mutation	23	47429359	G	A	43	94
BRCA	TCGA-BH-A204	ABCB7	SNP	Missense_Mutation	23	74273323	T	C	60	58
BRCA	TCGA-BH-A204	CAND2	SNP	Missense_Mutation	3	12856688	G	A	38	94
BRCA	TCGA-BH-A204	PRSS50	SNP	Missense_Mutation	3	46759116	C	T	27	50
BRCA	TCGA-BH-A204	RAD54L2	SNP	Splice_site	3	51673686	G	A	43	96
BRCA	TCGA-BH-A204	ADH1C	SNP	Silent	4	100261755	G	A	40	57
BRCA	TCGA-BH-A204	CCNA2	SNP	Missense_Mutation	4	122743762	C	A	17	75
BRCA	TCGA-BH-A204	CHIC2	SNP	Missense_Mutation	4	54880282	C	T	31	72
BRCA	TCGA-BH-A204	PTTG1	SNP	Missense_Mutation	5	159854736	G	A	45	78
BRCA	TCGA-BH-A204	KIF6	SNP	Missense_Mutation	6	39507794	G	A	34	79
BRCA	TCGA-BH-A204	MUC12	SNP	Missense_Mutation	7	100646938	C	G	17	52
BRCA	TCGA-BH-A204	GRID2IP	SNP	Missense_Mutation	7	6542661	C	T	23	71
BRCA	TCGA-BH-A204	FZD6	SNP	Missense_Mutation	8	104342280	C	T	27	72
BRCA	TCGA-BH-A204	COL15A1	SNP	Missense_Mutation	9	101822233	C	A	24	52
BRCA	TCGA-BH-A204	UAP1L1	SNP	Silent	9	139972912	G	T	42	50
BRCA	TCGA-BH-A208	CFH	SNP	Missense_Mutation	1	196654268	G	A	45	51
BRCA	TCGA-BH-A208	SHISA4	SNP	Nonsense_Mutation	1	201859608	C	G	29	78
BRCA	TCGA-BH-A208	CR2	SNP	Missense_Mutation	1	207648485	C	G	29	58
BRCA	TCGA-BH-A208	HDAC1	SNP	Silent	1	32793146	G	A	33	85
BRCA	TCGA-BH-A208	CSMD2	SNP	Missense_Mutation	1	34002643	C	G	32	84
BRCA	TCGA-BH-A208	WDR78	SNP	Missense_Mutation	1	67371056	T	C	60	32
BRCA	TCGA-BH-A208	TNFRSF9	INS	Frame_Shift_Ins	1	7993230	-	ATAT	9	69
BRCA	TCGA-BH-A208	RERE	SNP	Missense_Mutation	1	8421432	G	T	41	99
BRCA	TCGA-BH-A208	RUFY2	SNP	Missense_Mutation	10	70152941	T	C	51	71
BRCA	TCGA-BH-A208	DNTT	SNP	Silent	10	98087355	G	C	41	49
BRCA	TCGA-BH-A208	KIRREL3	SNP	Silent	11	126391325	C	T	17	58
BRCA	TCGA-BH-A208	OSBPL5	SNP	Missense_Mutation	11	3111890	C	T	31	68
BRCA	TCGA-BH-A208	RTN3	SNP	Missense_Mutation	11	63487595	G	C	33	67
BRCA	TCGA-BH-A208	CLEC12A	SNP	Silent	12	10137481	C	T	19	48
BRCA	TCGA-BH-A208	PUS1	SNP	Silent	12	132423786	C	T	29	59
BRCA	TCGA-BH-A208	OVCH1	SNP	Silent	12	29649525	A	G	2	49
BRCA	TCGA-BH-A208	SLC26A10	SNP	Nonsense_Mutation	12	58018733	G	T	41	56
BRCA	TCGA-BH-A208	PDS5B	SNP	Missense_Mutation	13	33281097	C	T	29	100
BRCA	TCGA-BH-A208	SPPL2A	SNP	Missense_Mutation	15	51024862	C	T	30	91
BRCA	TCGA-BH-A208	RNF40	SNP	Missense_Mutation	16	30778177	T	A	55	88
BRCA	TCGA-BH-A208	IRF8	SNP	Nonsense_Mutation	16	85936652	C	T	31	66
BRCA	TCGA-BH-A208	PSMD11	SNP	Missense_Mutation	17	30781593	C	G	32	96
BRCA	TCGA-BH-A208	GH2	SNP	Silent	17	61957656	G	A	43	51
BRCA	TCGA-BH-A208	TP53	SNP	Splice_Site	17	7578290	C	G	24	77
BRCA	TCGA-BH-A208	ZNF627	SNP	Missense_Mutation	19	11728555	C	G	29	69
BRCA	TCGA-BH-A208	CYP2B6	SNP	Missense_Mutation	19	41510050	C	G	22	48
BRCA	TCGA-BH-A208	XRCC1	SNP	Missense_Mutation	19	44055732	G	A	43	96
BRCA	TCGA-BH-A208	SIGLEC8	SNP	Missense_Mutation	19	51958011	C	G	20	52
BRCA	TCGA-BH-A208	LPIN1	SNP	Missense_Mutation	2	11911646	C	T	23	56
BRCA	TCGA-BH-A208	LRP1B	SNP	Nonsense_Mutation	2	141819658	G	A	45	57
BRCA	TCGA-BH-A208	ALMS1	SNP	Missense_Mutation	2	73717343	C	G	29	61
BRCA	TCGA-BH-A208	ALMS1	SNP	Missense_Mutation	2	73717959	C	T	29	54
BRCA	TCGA-BH-A208	ALMS1	SNP	Nonsense_Mutation	2	73718057	C	T	29	63
BRCA	TCGA-BH-A208	MRPL35	SNP	Silent	2	86434315	C	T	23	49
BRCA	TCGA-BH-A208	PCSK2	SNP	Missense_Mutation	20	17446160	G	C	33	59
BRCA	TCGA-BH-A208	BPIFB1	SNP	Missense_Mutation	20	31890728	G	A	33	44
BRCA	TCGA-BH-A208	ARMCX3	SNP	Silent	23	100880821	A	G	3	48
BRCA	TCGA-BH-A208	CHRDL1	SNP	Missense_Mutation	23	110035325	G	C	46	76
BRCA	TCGA-BH-A208	ASMT	SNP	Missense_Mutation	23	1755428	G	C	33	48
BRCA	TCGA-BH-A208	RP2	SNP	Missense_Mutation	23	46696579	C	G	31	56
BRCA	TCGA-BH-A208	MAGEE1	SNP	Missense_Mutation	23	75651058	T	C	51	60
BRCA	TCGA-BH-A208	HDX	SNP	Missense_Mutation	23	83724462	C	G	31	50
BRCA	TCGA-BH-A208	CCDC48	SNP	Missense_Mutation	3	128758648	C	G	32	59
BRCA	TCGA-BH-A208	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-BH-A208	FLNB	SNP	Missense_Mutation	3	58154337	G	A	39	81
BRCA	TCGA-BH-A208	ENPEP	SNP	Missense_Mutation	4	111474542	C	T	29	97
BRCA	TCGA-BH-A208	TRPC7	SNP	Missense_Mutation	5	135692820	C	T	19	99
BRCA	TCGA-BH-A208	SYNE1	SNP	Silent	6	152558036	C	T	21	69
BRCA	TCGA-BH-A208	MGAM	SNP	Missense_Mutation	7	141754683	C	T	31	54
BRCA	TCGA-BH-A208	AGAP3	SNP	Missense_Mutation	7	150840935	G	A	47	66
BRCA	TCGA-BH-A208	HUS1	SNP	Missense_Mutation	7	48018139	C	T	29	94
BRCA	TCGA-BH-A208	SLC39A4	SNP	Silent	8	145638248	G	A	37	63
BRCA	TCGA-BH-A208	PROSC	SNP	Silent	8	37633453	G	A	43	49
BRCA	TCGA-BH-A208	SGK3	SNP	Missense_Mutation	8	67740896	C	G	32	85
BRCA	TCGA-BH-A208	SULF1	SNP	Nonsense_Mutation	8	70550877	C	T	29	98
BRCA	TCGA-BH-A209	PIP5K1A	SNP	Nonsense_Mutation	1	151219428	C	T	29	74
BRCA	TCGA-BH-A209	SUCO	SNP	Missense_Mutation	1	172558069	G	C	45	86
BRCA	TCGA-BH-A209	SRGAP2	SNP	Splice_site	1	206611447	C	A	29	60
BRCA	TCGA-BH-A209	RPS6KC1	SNP	Silent	1	213303216	C	T	30	52
BRCA	TCGA-BH-A209	ZNF496	SNP	Missense_Mutation	1	247464393	C	T	31	57
BRCA	TCGA-BH-A209	SLC6A9	SNP	Splice_Site	1	44476555	C	T	32	93
BRCA	TCGA-BH-A209	IL12RB2	SNP	Missense_Mutation	1	67855809	G	A	33	77
BRCA	TCGA-BH-A209	GDF2	SNP	Missense_Mutation	10	48413859	C	T	31	66
BRCA	TCGA-BH-A209	TRIM29	SNP	Missense_Mutation	11	119998060	G	A	33	80
BRCA	TCGA-BH-A209	OR51S1	SNP	Silent	11	4869758	C	T	29	45
BRCA	TCGA-BH-A209	OR5D16	SNP	Silent	11	55606338	C	T	19	50
BRCA	TCGA-BH-A209	MS4A1	SNP	Missense_Mutation	11	60229921	C	G	32	76
BRCA	TCGA-BH-A209	AHNAK	SNP	Missense_Mutation	11	62294670	C	G	32	52
BRCA	TCGA-BH-A209	SUV420H1	SNP	Missense_Mutation	11	67925331	C	T	29	84
BRCA	TCGA-BH-A209	TRAFD1	SNP	Missense_Mutation	12	112583428	G	A	45	91
BRCA	TCGA-BH-A209	COL2A1	SNP	Missense_Mutation	12	48374414	C	G	29	100
BRCA	TCGA-BH-A209	KRT76	DEL	In_Frame_Del	12	53162774	CTG	-	20	54
BRCA	TCGA-BH-A209	N4BP2L2	SNP	Missense_Mutation	13	33092110	C	G	32	91
BRCA	TCGA-BH-A209	EDDM3A	SNP	Missense_Mutation	14	21215831	G	A	33	46
BRCA	TCGA-BH-A209	TRIM9	SNP	Silent	14	51560947	G	A	48	62
BRCA	TCGA-BH-A209	RIN3	SNP	Silent	14	93125804	C	T	31	42
BRCA	TCGA-BH-A209	CHRFAM7A	SNP	Missense_Mutation	15	30659709	A	G	8	81
BRCA	TCGA-BH-A209	RYR3	SNP	Missense_Mutation	15	33833010	G	A	47	84
BRCA	TCGA-BH-A209	UNC13C	SNP	Missense_Mutation	15	54306457	G	C	45	98
BRCA	TCGA-BH-A209	POLG	SNP	Missense_Mutation	15	89872184	C	T	32	50
BRCA	TCGA-BH-A209	MCTP2	SNP	Silent	15	94927324	C	A	29	76
BRCA	TCGA-BH-A209	CLCN7	SNP	Silent	16	1500621	G	A	33	81
BRCA	TCGA-BH-A209	ERN2	SNP	Silent	16	23722312	G	A	35	77
BRCA	TCGA-BH-A209	RBBP6	SNP	Missense_Mutation	16	24578496	G	C	33	94
BRCA	TCGA-BH-A209	NUP93	SNP	Missense_Mutation	16	56782199	G	A	45	100
BRCA	TCGA-BH-A209	CDH1	SNP	Nonsense_Mutation	16	68835596	C	T	31	67
BRCA	TCGA-BH-A209	VAC14	SNP	Missense_Mutation	16	70796903	G	T	45	61
BRCA	TCGA-BH-A209	KRT28	SNP	Missense_Mutation	17	38950184	C	T	31	78
BRCA	TCGA-BH-A209	SLC4A1	SNP	Silent	17	42330736	C	T	29	52
BRCA	TCGA-BH-A209	SPAG9	SNP	Missense_Mutation	17	49083456	C	G	32	100
BRCA	TCGA-BH-A209	SPAG9	SNP	Silent	17	49083547	C	G	29	62
BRCA	TCGA-BH-A209	RAD51C	SNP	Missense_Mutation	17	56770065	C	T	30	57
BRCA	TCGA-BH-A209	TMC6	SNP	Missense_Mutation	17	76120837	A	G	7	58
BRCA	TCGA-BH-A209	MUC16	SNP	Missense_Mutation	19	9086173	G	A	44	44
BRCA	TCGA-BH-A209	MUC16	SNP	Silent	19	9088599	G	C	47	42
BRCA	TCGA-BH-A209	MUC16	SNP	Silent	19	9090384	G	A	43	32
BRCA	TCGA-BH-A209	SLC5A7	SNP	Missense_Mutation	2	108608600	G	A	45	100
BRCA	TCGA-BH-A209	ITGA6	SNP	Missense_Mutation	2	173335724	G	C	33	87
BRCA	TCGA-BH-A209	MAP2	SNP	Missense_Mutation	2	210558653	G	C	45	59
BRCA	TCGA-BH-A209	PREB	SNP	Silent	2	27355593	C	T	21	83
BRCA	TCGA-BH-A209	ERLEC1	SNP	Missense_Mutation	2	54028744	C	G	29	100
BRCA	TCGA-BH-A209	ELMOD3	SNP	Missense_Mutation	2	85604484	G	C	33	94
BRCA	TCGA-BH-A209	DEFB125	SNP	Missense_Mutation	20	76927	G	C	45	37
BRCA	TCGA-BH-A209	GART	SNP	Silent	21	34876575	C	T	29	57
BRCA	TCGA-BH-A209	BCR	SNP	Missense_Mutation	22	23627293	G	C	41	98
BRCA	TCGA-BH-A209	GK	SNP	Missense_Mutation	23	30671665	C	T	29	59
BRCA	TCGA-BH-A209	SLC38A5	SNP	Missense_Mutation	23	48326103	G	C	45	58
BRCA	TCGA-BH-A209	CACNA1F	SNP	Silent	23	49062124	C	T	23	43
BRCA	TCGA-BH-A209	IGSF11	SNP	Missense_Mutation	3	118621736	G	T	48	82
BRCA	TCGA-BH-A209	ZNF148	DEL	Frame_Shift_Del	3	124952376	CTTA	-	32	56
BRCA	TCGA-BH-A209	CNTN6	SNP	Silent	3	1415621	C	G	29	49
BRCA	TCGA-BH-A209	DLG1	SNP	Missense_Mutation	3	196786826	C	G	32	97
BRCA	TCGA-BH-A209	CMTM7	SNP	Missense_Mutation	3	32493950	G	A	48	56
BRCA	TCGA-BH-A209	LMOD3	SNP	Silent	3	69171352	C	T	31	17
BRCA	TCGA-BH-A209	MAML3	SNP	Missense_Mutation	4	140811855	C	G	32	66
BRCA	TCGA-BH-A209	CWH43	SNP	Missense_Mutation	4	49032952	C	T	30	81
BRCA	TCGA-BH-A209	LIN54	SNP	Missense_Mutation	4	83857213	C	G	30	100
BRCA	TCGA-BH-A209	AFF1	SNP	Missense_Mutation	4	88046286	C	G	32	58
BRCA	TCGA-BH-A209	DRD5	SNP	Missense_Mutation	4	9784798	C	T	19	83
BRCA	TCGA-BH-A209	PCDHB8	SNP	Missense_Mutation	5	140559351	G	A	39	60
BRCA	TCGA-BH-A209	KCNMB1	SNP	Silent	5	169805861	C	T	30	51
BRCA	TCGA-BH-A209	GOPC	SNP	Missense_Mutation	6	117892082	G	T	41	96
BRCA	TCGA-BH-A209	EPM2A	SNP	Splice_site	6	145956381	C	A	24	97
BRCA	TCGA-BH-A209	T	SNP	Silent	6	166571842	G	C	45	50
BRCA	TCGA-BH-A209	SCAND3	SNP	Missense_Mutation	6	28542837	C	G	29	66
BRCA	TCGA-BH-A209	AGBL3	SNP	Missense_Mutation	7	134819891	G	C	45	50
BRCA	TCGA-BH-A209	TAS2R3	SNP	Silent	7	141463992	C	T	32	51
BRCA	TCGA-BH-A209	DNAH11	SNP	Missense_Mutation	7	21750285	G	T	41	100
BRCA	TCGA-BH-A209	COBL	SNP	Silent	7	51096585	C	T	21	38
BRCA	TCGA-BH-A209	GLCCI1	DEL	Frame_Shift_Del	7	8099783	TC	-	50	56
BRCA	TCGA-BH-A209	PABPC1	SNP	Silent	8	101730420	G	C	46	50
BRCA	TCGA-BH-A209	TRAPPC9	SNP	Missense_Mutation	8	141415752	A	T	12	77
BRCA	TCGA-BH-A209	TRUB2	SNP	Silent	9	131073254	C	A	29	54
BRCA	TCGA-BH-A209	RAPGEF1	SNP	Missense_Mutation	9	134504605	C	G	32	60
BRCA	TCGA-BH-A209	ZCCHC6	SNP	Missense_Mutation	9	88967818	C	G	32	59
BRCA	TCGA-BH-A209	ZNF367	SNP	Missense_Mutation	9	99160571	C	T	32	98
BRCA	TCGA-BH-A28Q	CREB3L4	SNP	Missense_Mutation	1	153941846	G	A	46	73
BRCA	TCGA-BH-A28Q	USH2A	SNP	Missense_Mutation	1	216172264	C	T	19	64
BRCA	TCGA-BH-A28Q	RYR2	SNP	Silent	1	237813233	C	T	23	45
BRCA	TCGA-BH-A28Q	CHML	SNP	Missense_Mutation	1	241798530	T	G	56	49
BRCA	TCGA-BH-A28Q	GATA3	DEL	Frame_Shift_Del	10	8115737	CCAGACCAGAAAC	-	30	70
BRCA	TCGA-BH-A28Q	CH25H	SNP	Missense_Mutation	10	90966611	G	T	47	98
BRCA	TCGA-BH-A28Q	HOGA1	SNP	Silent	10	99359502	G	A	46	65
BRCA	TCGA-BH-A28Q	SCGB2A1	SNP	Missense_Mutation	11	61977888	C	G	32	58
BRCA	TCGA-BH-A28Q	TBX3	SNP	Splice_Site	12	115120616	C	T	18	86
BRCA	TCGA-BH-A28Q	BCL2L14	SNP	Missense_Mutation	12	12232555	C	G	25	53
BRCA	TCGA-BH-A28Q	SLC25A47	SNP	Silent	14	100793545	C	T	26	52
BRCA	TCGA-BH-A28Q	POMT2	SNP	Missense_Mutation	14	77767528	C	T	24	87
BRCA	TCGA-BH-A28Q	GIT1	SNP	Silent	17	27903567	G	A	38	51
BRCA	TCGA-BH-A28Q	DOC2B	SNP	Silent	17	6037	G	A	40	48
BRCA	TCGA-BH-A28Q	TTLL4	SNP	Missense_Mutation	2	219609846	T	C	52	51
BRCA	TCGA-BH-A28Q	DIP2A	SNP	Missense_Mutation	21	47978254	G	A	38	98
BRCA	TCGA-BH-A28Q	TOP3B	SNP	Missense_Mutation	22	22318370	G	A	39	65
BRCA	TCGA-BH-A28Q	BRD1	SNP	Missense_Mutation	22	50217038	C	T	31	100
BRCA	TCGA-BH-A28Q	DCAF12L1	SNP	Missense_Mutation	23	125686114	A	C	11	76
BRCA	TCGA-BH-A28Q	ROS1	SNP	Nonsense_Mutation	6	117642471	G	A	38	60
BRCA	TCGA-BH-A28Q	CFTR	SNP	Missense_Mutation	7	117180174	G	A	39	97
BRCA	TCGA-C8-A12K	IGSF3	SNP	Missense_Mutation	1	117122205	G	A	35	56
BRCA	TCGA-C8-A12K	LOC440563	SNP	Missense_Mutation	1	13183223	T	A	52	50
BRCA	TCGA-C8-A12K	TOR3A	SNP	Missense_Mutation	1	179054768	G	A	33	53
BRCA	TCGA-C8-A12K	LHX4	SNP	Missense_Mutation	1	180241004	G	A	38	99
BRCA	TCGA-C8-A12K	DHX9	SNP	Silent	1	182853847	C	T	29	54
BRCA	TCGA-C8-A12K	FAM71A	SNP	Silent	1	212798330	C	T	19	44
BRCA	TCGA-C8-A12K	USH2A	SNP	Missense_Mutation	1	216138777	A	C	8	25
BRCA	TCGA-C8-A12K	USP48	SNP	Silent	1	22084186	G	T	37	44
BRCA	TCGA-C8-A12K	MEAF6	SNP	Missense_Mutation	1	37979110	G	C	33	59
BRCA	TCGA-C8-A12K	LRRC41	SNP	Missense_Mutation	1	46752022	G	C	33	55
BRCA	TCGA-C8-A12K	MCM10	SNP	Missense_Mutation	10	13237166	C	T	19	39
BRCA	TCGA-C8-A12K	DDX21	SNP	Missense_Mutation	10	70737415	G	A	33	67
BRCA	TCGA-C8-A12K	KCNJ1	SNP	Missense_Mutation	11	128709242	C	A	24	65
BRCA	TCGA-C8-A12K	PIK3C2A	SNP	Missense_Mutation	11	17121503	C	T	22	87
BRCA	TCGA-C8-A12K	QSER1	SNP	Missense_Mutation	11	32956801	G	A	36	51
BRCA	TCGA-C8-A12K	CSTF3	SNP	Missense_Mutation	11	33108591	C	G	32	86
BRCA	TCGA-C8-A12K	OR51B6	SNP	Silent	11	5373049	T	A	54	49
BRCA	TCGA-C8-A12K	TRIM34	SNP	Missense_Mutation	11	5624607	T	A	53	83
BRCA	TCGA-C8-A12K	TUT1	SNP	Nonsense_Mutation	11	62348589	C	A	30	62
BRCA	TCGA-C8-A12K	STX5	SNP	Silent	11	62598707	C	G	27	55
BRCA	TCGA-C8-A12K	EIF1AD	SNP	Missense_Mutation	11	65767848	T	C	59	86
BRCA	TCGA-C8-A12K	TAS2R14	SNP	Missense_Mutation	12	11091327	T	G	62	50
BRCA	TCGA-C8-A12K	CACNA2D4	SNP	Missense_Mutation	12	1920881	C	A	19	49
BRCA	TCGA-C8-A12K	SMARCC2	SNP	Missense_Mutation	12	56567506	C	G	18	97
BRCA	TCGA-C8-A12K	USP15	SNP	Missense_Mutation	12	62775318	G	C	36	54
BRCA	TCGA-C8-A12K	B4GALNT3	SNP	Missense_Mutation	12	665730	G	A	38	83
BRCA	TCGA-C8-A12K	FGD6	SNP	Missense_Mutation	12	95603690	T	A	56	57
BRCA	TCGA-C8-A12K	MOK	SNP	Silent	14	102698065	A	G	1	44
BRCA	TCGA-C8-A12K	ATG14	SNP	Splice_Site	14	55852815	C	G	32	82
BRCA	TCGA-C8-A12K	APBA2	SNP	Missense_Mutation	15	29346952	G	C	37	63
BRCA	TCGA-C8-A12K	FAM96A	SNP	Missense_Mutation	15	64367694	C	G	32	85
BRCA	TCGA-C8-A12K	FAM108C1	SNP	Silent	15	81046555	C	A	29	54
BRCA	TCGA-C8-A12K	ATXN2L	SNP	Missense_Mutation	16	28842316	C	T	24	92
BRCA	TCGA-C8-A12K	PSKH1	SNP	Nonsense_Mutation	16	67942876	C	G	29	66
BRCA	TCGA-C8-A12K	MSLN	SNP	Silent	16	816661	C	T	30	42
BRCA	TCGA-C8-A12K	FAM18B2-CDRT4	SNP	Missense_Mutation	17	15450400	C	G	32	58
BRCA	TCGA-C8-A12K	KIAA0100	DEL	In_Frame_Del	17	26961913	TCA	-	62	90
BRCA	TCGA-C8-A12K	MYO18A	SNP	Silent	17	27424325	C	T	21	55
BRCA	TCGA-C8-A12K	PNPO	SNP	Nonsense_Mutation	17	46023746	A	T	5	87
BRCA	TCGA-C8-A12K	APPBP2	SNP	Silent	17	58531762	T	C	59	49
BRCA	TCGA-C8-A12K	TP53	SNP	Missense_Mutation	17	7578265	A	G	12	68
BRCA	TCGA-C8-A12K	RNF213	SNP	Silent	17	78306165	C	T	32	68
BRCA	TCGA-C8-A12K	FHOD3	SNP	Missense_Mutation	18	34298590	T	G	55	86
BRCA	TCGA-C8-A12K	TCF4	SNP	Missense_Mutation	18	52901809	C	A	29	93
BRCA	TCGA-C8-A12K	ARHGAP28	SNP	Missense_Mutation	18	6868167	C	A	30	63
BRCA	TCGA-C8-A12K	ATG4D	SNP	Missense_Mutation	19	10662976	G	C	33	73
BRCA	TCGA-C8-A12K	EMR2	SNP	Silent	19	14884859	G	A	43	47
BRCA	TCGA-C8-A12K	ENSG00000213985	SNP	Missense_Mutation	19	20369309	G	C	43	61
BRCA	TCGA-C8-A12K	ZFR2	SNP	Missense_Mutation	19	3852528	G	C	40	47
BRCA	TCGA-C8-A12K	ZIK1	SNP	Missense_Mutation	19	58102405	G	T	48	91
BRCA	TCGA-C8-A12K	MBD3L1	SNP	Missense_Mutation	19	8953926	C	T	24	49
BRCA	TCGA-C8-A12K	CKAP2L	SNP	Missense_Mutation	2	113518307	G	C	45	75
BRCA	TCGA-C8-A12K	SAP130	SNP	Silent	2	128767869	C	T	23	44
BRCA	TCGA-C8-A12K	GALNT13	SNP	Missense_Mutation	2	155265555	A	T	3	76
BRCA	TCGA-C8-A12K	ICA1L	SNP	Missense_Mutation	2	203661619	C	G	29	69
BRCA	TCGA-C8-A12K	CPS1	SNP	Missense_Mutation	2	211512678	C	G	17	99
BRCA	TCGA-C8-A12K	IRS1	SNP	Silent	2	227662969	C	T	24	65
BRCA	TCGA-C8-A12K	AGXT	SNP	Missense_Mutation	2	241808313	C	G	22	73
BRCA	TCGA-C8-A12K	XDH	SNP	Missense_Mutation	2	31621458	C	G	32	54
BRCA	TCGA-C8-A12K	SMYD1	SNP	Missense_Mutation	2	88409999	C	G	26	55
BRCA	TCGA-C8-A12K	ELMO2	SNP	Splice_Site	20	45021783	C	A	32	97
BRCA	TCGA-C8-A12K	ZNF74	SNP	Missense_Mutation	22	20760374	C	G	24	51
BRCA	TCGA-C8-A12K	SMTN	SNP	Nonsense_Mutation	22	31486977	C	A	29	57
BRCA	TCGA-C8-A12K	PLA2G6	SNP	Missense_Mutation	22	38536013	G	A	37	56
BRCA	TCGA-C8-A12K	NXF5	SNP	Silent	23	101091722	A	G	11	51
BRCA	TCGA-C8-A12K	DCAF12L1	SNP	Silent	23	125686220	G	A	40	51
BRCA	TCGA-C8-A12K	BCORL1	SNP	Silent	23	129148107	G	A	38	16
BRCA	TCGA-C8-A12K	ATXN3L	SNP	Missense_Mutation	23	13337695	C	A	21	53
BRCA	TCGA-C8-A12K	ZNF449	SNP	Missense_Mutation	23	134493837	G	T	45	61
BRCA	TCGA-C8-A12K	FMR1	SNP	Missense_Mutation	23	147014261	C	G	17	70
BRCA	TCGA-C8-A12K	ATP2B3	SNP	Splice_site	23	152827699	A	T	7	86
BRCA	TCGA-C8-A12K	POLA1	SNP	Missense_Mutation	23	24760174	C	T	25	94
BRCA	TCGA-C8-A12K	RPGR	DEL	Frame_Shift_Del	23	38145517	C	-	30	48
BRCA	TCGA-C8-A12K	FOXO4	SNP	Silent	23	70316804	T	A	59	52
BRCA	TCGA-C8-A12K	MED12	SNP	Silent	23	70352290	C	G	30	50
BRCA	TCGA-C8-A12K	SELT	SNP	Silent	3	150321284	T	A	64	51
BRCA	TCGA-C8-A12K	ECE2	SNP	Silent	3	184003269	C	A	30	47
BRCA	TCGA-C8-A12K	LEPREL1	SNP	Splice_site	3	189704666	C	G	30	84
BRCA	TCGA-C8-A12K	KIAA0232	SNP	Missense_Mutation	4	6865611	T	G	50	63
BRCA	TCGA-C8-A12K	APC	SNP	Missense_Mutation	5	112179630	G	C	33	97
BRCA	TCGA-C8-A12K	KCNN2	SNP	Missense_Mutation	5	113740461	G	C	33	86
BRCA	TCGA-C8-A12K	FBN2	SNP	Missense_Mutation	5	127686601	A	T	11	88
BRCA	TCGA-C8-A12K	FAM13B	SNP	Missense_Mutation	5	137284667	T	C	54	63
BRCA	TCGA-C8-A12K	PKIB	SNP	Silent	6	123038978	T	C	55	55
BRCA	TCGA-C8-A12K	FAM65B	SNP	Missense_Mutation	6	24850064	C	G	21	100
BRCA	TCGA-C8-A12K	MAPK13	SNP	Silent	6	36103593	G	A	35	55
BRCA	TCGA-C8-A12K	DAAM2	SNP	Missense_Mutation	6	39824117	C	A	30	62
BRCA	TCGA-C8-A12K	NCR2	SNP	Missense_Mutation	6	41309625	G	T	33	46
BRCA	TCGA-C8-A12K	SCIN	SNP	Splice_Site	7	12620847	G	A	40	99
BRCA	TCGA-C8-A12K	PLXNA4	SNP	Missense_Mutation	7	131887475	G	A	35	72
BRCA	TCGA-C8-A12K	ZNF862	SNP	Missense_Mutation	7	149557807	G	C	45	75
BRCA	TCGA-C8-A12K	FAM183B	SNP	Nonsense_Mutation	7	38725521	G	A	40	49
BRCA	TCGA-C8-A12K	IKZF1	SNP	Missense_Mutation	7	50450348	T	A	55	94
BRCA	TCGA-C8-A12K	NUDCD1	SNP	Nonsense_Mutation	8	110308645	C	A	29	71
BRCA	TCGA-C8-A12K	ZFAT	SNP	Splice_Site	8	135669982	T	C	55	77
BRCA	TCGA-C8-A12K	COL22A1	SNP	Splice_Site	8	139767455	T	A	55	71
BRCA	TCGA-C8-A12K	ADRA1A	SNP	Silent	8	26627933	G	A	39	28
BRCA	TCGA-C8-A12K	PXDNL	SNP	Silent	8	52336142	T	G	55	45
BRCA	TCGA-C8-A12K	CSPP1	SNP	Missense_Mutation	8	68087581	G	C	33	68
BRCA	TCGA-C8-A12K	ARFGEF1	SNP	Missense_Mutation	8	68138335	C	T	25	100
BRCA	TCGA-C8-A12K	IFNA2	SNP	Missense_Mutation	9	21384882	G	C	45	48
BRCA	TCGA-C8-A12K	ENSG00000232067	SNP	Missense_Mutation	9	34834342	C	T	17	50
BRCA	TCGA-C8-A12K	PRUNE2	SNP	Missense_Mutation	9	79324986	T	A	54	67
BRCA	TCGA-C8-A12K	SPTLC1	SNP	Silent	9	94821572	A	G	5	69
BRCA	TCGA-C8-A12L	PDE4DIP	SNP	Missense_Mutation	1	144930847	G	C	34	71
BRCA	TCGA-C8-A12L	SETDB1	SNP	Missense_Mutation	1	150923915	C	G	32	98
BRCA	TCGA-C8-A12L	FLG	DEL	In_Frame_Del	1	152285926	TCAGGCTGT	-	58	56
BRCA	TCGA-C8-A12L	FCRL1	SNP	Missense_Mutation	1	157771712	G	T	36	49
BRCA	TCGA-C8-A12L	SPTA1	SNP	Missense_Mutation	1	158582648	C	T	26	61
BRCA	TCGA-C8-A12L	PYHIN1	SNP	Missense_Mutation	1	158943528	C	A	30	41
BRCA	TCGA-C8-A12L	COPA	SNP	Missense_Mutation	1	160280016	T	A	57	88
BRCA	TCGA-C8-A12L	VANGL2	SNP	Silent	1	160389022	C	T	27	56
BRCA	TCGA-C8-A12L	CLCNKA	SNP	Missense_Mutation	1	16351326	C	T	22	90
BRCA	TCGA-C8-A12L	CRB1	SNP	Missense_Mutation	1	197396665	T	A	50	59
BRCA	TCGA-C8-A12L	PLA2G2D	SNP	Missense_Mutation	1	20442903	C	T	25	38
BRCA	TCGA-C8-A12L	OBSCN	SNP	Missense_Mutation	1	228402602	C	G	20	87
BRCA	TCGA-C8-A12L	AJAP1	SNP	Missense_Mutation	1	4832546	C	T	31	53
BRCA	TCGA-C8-A12L	ABCA4	SNP	Missense_Mutation	1	94528272	C	G	32	99
BRCA	TCGA-C8-A12L	PDCD11	SNP	Missense_Mutation	10	105173788	C	G	17	61
BRCA	TCGA-C8-A12L	OR2AG2	SNP	Silent	11	6790159	G	A	38	50
BRCA	TCGA-C8-A12L	ODZ4	SNP	Missense_Mutation	11	78369780	A	G	11	60
BRCA	TCGA-C8-A12L	ANO4	SNP	Silent	12	101504243	C	G	24	73
BRCA	TCGA-C8-A12L	PTPN11	SNP	Missense_Mutation	12	112884103	G	A	44	89
BRCA	TCGA-C8-A12L	WNT5B	SNP	Missense_Mutation	12	1755250	C	G	25	86
BRCA	TCGA-C8-A12L	TENC1	SNP	Missense_Mutation	12	53453704	C	T	25	55
BRCA	TCGA-C8-A12L	LOC100286917	SNP	Silent	12	9571035	C	T	24	61
BRCA	TCGA-C8-A12L	HAL	SNP	Missense_Mutation	12	96388760	C	T	29	99
BRCA	TCGA-C8-A12L	PSME1	SNP	Silent	14	24605501	C	G	22	73
BRCA	TCGA-C8-A12L	ITPK1	SNP	Silent	14	93412701	G	C	39	20
BRCA	TCGA-C8-A12L	DDX24	SNP	Missense_Mutation	14	94524203	C	G	30	87
BRCA	TCGA-C8-A12L	CCDC78	SNP	Missense_Mutation	16	774397	G	C	42	85
BRCA	TCGA-C8-A12L	SGSM2	SNP	Missense_Mutation	17	2270688	A	G	4	89
BRCA	TCGA-C8-A12L	NOS2	SNP	Silent	17	26087755	G	A	44	46
BRCA	TCGA-C8-A12L	SLC4A1	SNP	Missense_Mutation	17	42330612	C	T	19	97
BRCA	TCGA-C8-A12L	MYCBPAP	SNP	Missense_Mutation	17	48600415	G	A	39	91
BRCA	TCGA-C8-A12L	ABCA10	SNP	Missense_Mutation	17	67188786	C	A	20	87
BRCA	TCGA-C8-A12L	TP53	SNP	Missense_Mutation	17	7577568	C	A	17	93
BRCA	TCGA-C8-A12L	FASN	SNP	Missense_Mutation	17	80040513	C	T	19	53
BRCA	TCGA-C8-A12L	PTPN2	SNP	Missense_Mutation	18	12825813	A	C	12	61
BRCA	TCGA-C8-A12L	PGLYRP2	DEL	Frame_Shift_Del	19	15586540	A	-	9	78
BRCA	TCGA-C8-A12L	CYP4F11	DEL	In_Frame_Del	19	16024565	GCTCCACCCGCA	-	42	64
BRCA	TCGA-C8-A12L	HAUS5	SNP	Missense_Mutation	19	36110636	C	G	19	61
BRCA	TCGA-C8-A12L	RYR1	SNP	Missense_Mutation	19	38960007	G	A	40	93
BRCA	TCGA-C8-A12L	GIPR	SNP	Silent	19	46181247	G	T	42	47
BRCA	TCGA-C8-A12L	KLK5	SNP	Missense_Mutation	19	51452007	C	A	20	59
BRCA	TCGA-C8-A12L	ATRAID	DEL	In_Frame_Del	2	27439748	GGAGCCACCACTCTATCC	-	43	77
BRCA	TCGA-C8-A12L	C2orf16	SNP	Missense_Mutation	2	27800838	C	T	18	49
BRCA	TCGA-C8-A12L	XPO1	SNP	Missense_Mutation	2	61720102	G	T	45	66
BRCA	TCGA-C8-A12L	LIME1	SNP	Missense_Mutation	20	62370149	G	T	41	52
BRCA	TCGA-C8-A12L	ZNF295	SNP	Nonsense_Mutation	21	43411588	G	A	46	96
BRCA	TCGA-C8-A12L	C21orf33	SNP	Silent	21	45553624	A	G	8	50
BRCA	TCGA-C8-A12L	SFI1	INS	Frame_Shift_Ins	22	31971290	-	A	41	50
BRCA	TCGA-C8-A12L	MYH9	SNP	Missense_Mutation	22	36696999	T	G	52	61
BRCA	TCGA-C8-A12L	HNRNPH2	SNP	Missense_Mutation	23	100667034	T	A	55	72
BRCA	TCGA-C8-A12L	VSIG1	SNP	Missense_Mutation	23	107316029	G	A	43	59
BRCA	TCGA-C8-A12L	DDX26B	SNP	Missense_Mutation	23	134706902	C	G	20	65
BRCA	TCGA-C8-A12L	EGFL6	SNP	Silent	23	13645206	T	A	55	31
BRCA	TCGA-C8-A12L	SLITRK2	SNP	Missense_Mutation	23	144905067	C	A	18	81
BRCA	TCGA-C8-A12L	FAM47A	SNP	Missense_Mutation	23	34148875	C	A	28	28
BRCA	TCGA-C8-A12L	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-C8-A12L	CCDC39	SNP	Missense_Mutation	3	180366114	C	T	17	55
BRCA	TCGA-C8-A12L	RARB	SNP	Silent	3	25622057	A	T	11	41
BRCA	TCGA-C8-A12L	IL17RB	SNP	Missense_Mutation	3	53899288	G	A	34	44
BRCA	TCGA-C8-A12L	FLNB	DEL	Frame_Shift_Del	3	58156382	C	-	25	84
BRCA	TCGA-C8-A12L	PDHA2	SNP	Missense_Mutation	4	96762083	G	A	40	76
BRCA	TCGA-C8-A12L	FBXL17	SNP	Splice_site	5	107559823	T	A	56	69
BRCA	TCGA-C8-A12L	IL7R	SNP	Missense_Mutation	5	35871268	A	G	4	45
BRCA	TCGA-C8-A12L	DMGDH	DEL	Frame_Shift_Del	5	78351620	TAAATGCCTTTACCTGACCAGTTTCTTCTTCCAGTTTCTCA	-	61	50
BRCA	TCGA-C8-A12L	HIST1H3D	SNP	Missense_Mutation	6	26197245	G	T	36	67
BRCA	TCGA-C8-A12L	C4A	SNP	Missense_Mutation	6	31965519	G	T	41	66
BRCA	TCGA-C8-A12L	C4B	SNP	Missense_Mutation	6	31998256	G	T	41	70
BRCA	TCGA-C8-A12L	TRERF1	SNP	Silent	6	42236918	G	A	38	51
BRCA	TCGA-C8-A12L	EYS	SNP	Missense_Mutation	6	64498094	C	A	21	71
BRCA	TCGA-C8-A12L	TSPAN12	SNP	Missense_Mutation	7	120496813	G	A	42	82
BRCA	TCGA-C8-A12L	MGAM	SNP	Silent	7	141783171	C	T	32	50
BRCA	TCGA-C8-A12L	PTPRN2	SNP	Missense_Mutation	7	157903560	C	T	27	38
BRCA	TCGA-C8-A12L	GCK	SNP	Missense_Mutation	7	44192974	A	T	7	90
BRCA	TCGA-C8-A12L	C8orf44	SNP	Missense_Mutation	8	67592086	C	T	23	47
BRCA	TCGA-C8-A12L	CDH17	SNP	Missense_Mutation	8	95182679	G	T	44	73
BRCA	TCGA-C8-A12L	ESRP1	SNP	Silent	8	95658491	C	T	19	56
BRCA	TCGA-C8-A12L	CPQ	SNP	Missense_Mutation	8	98041636	C	T	27	77
BRCA	TCGA-C8-A12L	TAF1L	INS	Frame_Shift_Ins	9	32634816	-	A	58	50
BRCA	TCGA-C8-A12M	DAP3	SNP	Missense_Mutation	1	155701787	C	A	22	69
BRCA	TCGA-C8-A12M	PYHIN1	SNP	Missense_Mutation	1	158913619	G	T	41	67
BRCA	TCGA-C8-A12M	KIF26B	SNP	Silent	1	245766076	C	T	19	57
BRCA	TCGA-C8-A12M	PSTK	DEL	Frame_Shift_Del	10	124742808	CT	-	28	50
BRCA	TCGA-C8-A12M	ANK3	SNP	Missense_Mutation	10	61819641	G	C	35	82
BRCA	TCGA-C8-A12M	GATA3	INS	Frame_Shift_Ins	10	8115873	-	C	54	59
BRCA	TCGA-C8-A12M	C11orf53	SNP	Silent	11	111156467	G	A	37	41
BRCA	TCGA-C8-A12M	OR8D4	SNP	Missense_Mutation	11	123777212	T	G	55	66
BRCA	TCGA-C8-A12M	SRPR	SNP	Missense_Mutation	11	126134994	A	G	6	91
BRCA	TCGA-C8-A12M	USH1C	SNP	Silent	11	17531314	G	A	38	33
BRCA	TCGA-C8-A12M	KBTBD4	SNP	Missense_Mutation	11	47594816	T	C	58	90
BRCA	TCGA-C8-A12M	PTPRJ	SNP	Missense_Mutation	11	48164480	C	G	24	49
BRCA	TCGA-C8-A12M	DNHD1	SNP	Missense_Mutation	11	6561187	C	T	27	71
BRCA	TCGA-C8-A12M	PITPNM2	SNP	Missense_Mutation	12	123498580	G	A	39	83
BRCA	TCGA-C8-A12M	LRP6	SNP	Silent	12	12397348	C	T	26	47
BRCA	TCGA-C8-A12M	GPR84	SNP	Missense_Mutation	12	54757355	C	A	24	82
BRCA	TCGA-C8-A12M	OR6C70	SNP	Missense_Mutation	12	55863307	T	C	49	51
BRCA	TCGA-C8-A12M	PTPRB	SNP	Nonsense_Mutation	12	70933795	G	A	37	53
BRCA	TCGA-C8-A12M	PTPRQ	SNP	Nonsense_Mutation	12	80935456	C	T	17	61
BRCA	TCGA-C8-A12M	TMTC4	SNP	Missense_Mutation	13	101278370	T	G	64	63
BRCA	TCGA-C8-A12M	WBP4	SNP	Missense_Mutation	13	41639395	G	T	35	58
BRCA	TCGA-C8-A12M	CPB2	SNP	Silent	13	46629931	G	T	47	54
BRCA	TCGA-C8-A12M	DUOX1	SNP	Missense_Mutation	15	45444508	C	T	19	24
BRCA	TCGA-C8-A12M	NEIL1	SNP	Nonsense_Mutation	15	75647144	C	T	27	45
BRCA	TCGA-C8-A12M	COPS3	SNP	Missense_Mutation	17	17163709	T	C	56	77
BRCA	TCGA-C8-A12M	MLLT6	SNP	Silent	17	36865482	C	T	25	55
BRCA	TCGA-C8-A12M	CRHR1	SNP	Missense_Mutation	17	43906585	A	C	1	75
BRCA	TCGA-C8-A12M	PELP1	SNP	Missense_Mutation	17	4576281	C	A	22	59
BRCA	TCGA-C8-A12M	TRIM25	SNP	Missense_Mutation	17	54978817	C	G	20	41
BRCA	TCGA-C8-A12M	TANC2	SNP	Missense_Mutation	17	61428682	G	T	41	100
BRCA	TCGA-C8-A12M	SMURF2	DEL	Frame_Shift_Del	17	62553744	AG	-	7	50
BRCA	TCGA-C8-A12M	ABCA5	SNP	Missense_Mutation	17	67282161	T	C	49	54
BRCA	TCGA-C8-A12M	LGALS3BP	SNP	Silent	17	76968195	C	T	30	50
BRCA	TCGA-C8-A12M	NR1H2	SNP	Missense_Mutation	19	50881600	C	T	23	62
BRCA	TCGA-C8-A12M	ZSCAN5C	SNP	Missense_Mutation	19	56720339	T	G	60	76
BRCA	TCGA-C8-A12M	OR6B3	SNP	Silent	2	240984860	T	C	59	2
BRCA	TCGA-C8-A12M	TMX4	SNP	Missense_Mutation	20	8000123	G	C	36	72
BRCA	TCGA-C8-A12M	COL4A5	SNP	Missense_Mutation	23	107814670	G	T	39	93
BRCA	TCGA-C8-A12M	GNG5P2	SNP	Silent	23	109590120	G	A	38	52
BRCA	TCGA-C8-A12M	PCDH19	SNP	Missense_Mutation	23	99663201	G	T	46	56
BRCA	TCGA-C8-A12M	KIAA1407	SNP	Nonsense_Mutation	3	113721362	G	A	40	69
BRCA	TCGA-C8-A12M	CACNA2D3	SNP	Missense_Mutation	3	54786629	C	T	31	97
BRCA	TCGA-C8-A12M	CENPE	SNP	Missense_Mutation	4	104059573	T	C	56	47
BRCA	TCGA-C8-A12M	DKK2	SNP	Missense_Mutation	4	107845202	C	T	19	98
BRCA	TCGA-C8-A12M	GUF1	SNP	Splice_site	4	44682858	C	G	23	94
BRCA	TCGA-C8-A12M	PPAT	SNP	Missense_Mutation	4	57272683	T	C	52	90
BRCA	TCGA-C8-A12M	LARP1	SNP	Missense_Mutation	5	154181757	A	T	12	94
BRCA	TCGA-C8-A12M	RASA1	INS	Splice_Site	5	86670139	-	A	57	93
BRCA	TCGA-C8-A12M	HFE	SNP	Missense_Mutation	6	26093039	C	G	26	69
BRCA	TCGA-C8-A12M	MYO6	DEL	Frame_Shift_Del	6	76554660	ACAA	-	10	88
BRCA	TCGA-C8-A12M	TRRAP	SNP	Missense_Mutation	7	98528431	T	A	58	93
BRCA	TCGA-C8-A12M	CSMD1	SNP	Splice_site	8	3057330	C	T	22	43
BRCA	TCGA-C8-A12M	PPP3R2	SNP	Silent	9	104356697	G	A	37	39
BRCA	TCGA-C8-A12M	GOLGA1	SNP	Missense_Mutation	9	127683437	T	C	51	62
BRCA	TCGA-C8-A12M	ENG	SNP	Missense_Mutation	9	130605471	C	T	31	43
BRCA	TCGA-C8-A12M	NTNG2	SNP	Silent	9	135073814	C	T	23	34
BRCA	TCGA-C8-A12M	TTF1	SNP	Silent	9	135273709	G	A	37	41
BRCA	TCGA-C8-A12M	TAF1L	SNP	Silent	9	32632815	G	T	34	55
BRCA	TCGA-C8-A12N	ATP5F1	SNP	Silent	1	112002198	A	G	2	55
BRCA	TCGA-C8-A12N	COL17A1	SNP	Silent	10	105811267	G	A	38	22
BRCA	TCGA-C8-A12N	PARVA	SNP	Silent	11	12399200	C	T	21	46
BRCA	TCGA-C8-A12N	TAS2R31	SNP	Missense_Mutation	12	11183409	C	G	32	44
BRCA	TCGA-C8-A12N	SBNO1	SNP	Splice_Site	12	123794131	C	A	32	80
BRCA	TCGA-C8-A12N	RIMBP2	SNP	Missense_Mutation	12	130907060	C	T	23	72
BRCA	TCGA-C8-A12N	CACNA1C	SNP	Silent	12	2775903	G	A	38	48
BRCA	TCGA-C8-A12N	MLL2	DEL	Frame_Shift_Del	12	49445909	G	-	35	55
BRCA	TCGA-C8-A12N	ARHGAP9	SNP	Missense_Mutation	12	57872994	G	A	40	57
BRCA	TCGA-C8-A12N	MYH11	SNP	Silent	16	15831386	G	T	37	51
BRCA	TCGA-C8-A12N	KRT27	SNP	Silent	17	38933368	G	T	45	49
BRCA	TCGA-C8-A12N	CD300LG	SNP	Missense_Mutation	17	41931261	T	C	57	45
BRCA	TCGA-C8-A12N	NOTCH3	SNP	Silent	19	15276820	G	A	48	52
BRCA	TCGA-C8-A12N	TTLL8	SNP	Missense_Mutation	22	50472912	A	G	9	52
BRCA	TCGA-C8-A12N	ZC3H12B	SNP	Missense_Mutation	23	64721753	T	C	54	84
BRCA	TCGA-C8-A12N	PCDH19	SNP	Missense_Mutation	23	99605659	G	C	42	96
BRCA	TCGA-C8-A12N	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-C8-A12N	RARS	SNP	Missense_Mutation	5	167943847	C	T	28	98
BRCA	TCGA-C8-A12N	EXOC3	SNP	Silent	5	457049	C	G	31	46
BRCA	TCGA-C8-A12N	MAP3K1	DEL	Frame_Shift_Del	5	56167804	AC	-	14	87
BRCA	TCGA-C8-A12N	MAP3K1	DEL	Frame_Shift_Del	5	56189423	TCTTCGTTGTTTAG	-	54	49
BRCA	TCGA-C8-A12N	MAP3K1	SNP	Missense_Mutation	5	56189440	T	A	56	88
BRCA	TCGA-C8-A12N	NCOA7	SNP	Missense_Mutation	6	126243897	G	C	39	100
BRCA	TCGA-C8-A12N	EPHA1	SNP	Missense_Mutation	7	143095047	G	C	33	75
BRCA	TCGA-C8-A12N	INHBA	SNP	Silent	7	41729851	G	A	46	55
BRCA	TCGA-C8-A12O	FLVCR1	SNP	Missense_Mutation	1	213037133	C	T	32	62
BRCA	TCGA-C8-A12O	TRIM17	SNP	Missense_Mutation	1	228596209	C	T	23	76
BRCA	TCGA-C8-A12O	SLC9A1	SNP	Silent	1	27429181	G	A	44	69
BRCA	TCGA-C8-A12O	MCOLN2	SNP	Missense_Mutation	1	85403443	C	T	29	71
BRCA	TCGA-C8-A12O	MASTL	SNP	Missense_Mutation	10	27459378	A	G	1	56
BRCA	TCGA-C8-A12O	PHRF1	DEL	In_Frame_Del	11	610989	GGA	-	47	60
BRCA	TCGA-C8-A12O	AIP	SNP	Missense_Mutation	11	67254510	G	A	37	34
BRCA	TCGA-C8-A12O	DNAJB13	SNP	Missense_Mutation	11	73680349	C	G	22	94
BRCA	TCGA-C8-A12O	KITLG	SNP	Missense_Mutation	12	88910120	G	A	41	79
BRCA	TCGA-C8-A12O	ATP2B1	SNP	Missense_Mutation	12	89998003	A	G	4	93
BRCA	TCGA-C8-A12O	MYCBP2	SNP	Missense_Mutation	13	77644827	A	G	7	88
BRCA	TCGA-C8-A12O	TSHR	SNP	Missense_Mutation	14	81609772	C	A	26	100
BRCA	TCGA-C8-A12O	ENSG00000215315	SNP	Silent	15	30337381	G	A	39	47
BRCA	TCGA-C8-A12O	MEX3B	SNP	Silent	15	82336479	G	A	40	64
BRCA	TCGA-C8-A12O	CDH15	SNP	Missense_Mutation	16	89245960	G	A	40	62
BRCA	TCGA-C8-A12O	MYH8	SNP	Missense_Mutation	17	10303960	G	T	33	100
BRCA	TCGA-C8-A12O	TP53	SNP	Missense_Mutation	17	7577120	C	T	19	94
BRCA	TCGA-C8-A12O	DNAH17	SNP	Nonsense_Mutation	17	76487632	G	A	38	62
BRCA	TCGA-C8-A12O	PRKCG	SNP	Silent	19	54403682	G	A	39	26
BRCA	TCGA-C8-A12O	ZNF814	SNP	Missense_Mutation	19	58384420	A	G	12	46
BRCA	TCGA-C8-A12O	GREB1	SNP	Silent	2	11772121	C	T	19	39
BRCA	TCGA-C8-A12O	HNRNPA3	SNP	Silent	2	178081262	T	C	52	54
BRCA	TCGA-C8-A12O	HSPD1	SNP	Missense_Mutation	2	198353857	C	A	24	99
BRCA	TCGA-C8-A12O	MFF	SNP	Missense_Mutation	2	228194484	A	T	10	76
BRCA	TCGA-C8-A12O	POFUT1	SNP	Missense_Mutation	20	30816166	T	A	58	79
BRCA	TCGA-C8-A12O	KIAA1755	SNP	Silent	20	36874487	C	T	23	31
BRCA	TCGA-C8-A12O	CDH4	SNP	Missense_Mutation	20	60419757	C	T	23	64
BRCA	TCGA-C8-A12O	RUNX1	SNP	Missense_Mutation	21	36252860	C	G	21	100
BRCA	TCGA-C8-A12O	APOL3	SNP	Silent	22	36537431	C	T	31	34
BRCA	TCGA-C8-A12O	GAGE2B	SNP	Missense_Mutation	23	49236865	G	C	33	45
BRCA	TCGA-C8-A12O	INPP4B	SNP	Missense_Mutation	4	143114276	C	T	23	70
BRCA	TCGA-C8-A12O	C5orf42	SNP	Missense_Mutation	5	37158402	T	A	49	52
BRCA	TCGA-C8-A12O	C5orf42	SNP	Missense_Mutation	5	37169279	G	A	47	63
BRCA	TCGA-C8-A12O	ZYX	SNP	Silent	7	143085937	C	T	18	54
BRCA	TCGA-C8-A12O	DAB2IP	SNP	Missense_Mutation	9	124528882	C	T	27	96
BRCA	TCGA-C8-A12P	PRPF38B	SNP	Missense_Mutation	1	109241882	A	T	9	90
BRCA	TCGA-C8-A12P	SF3B4	SNP	Missense_Mutation	1	149898614	G	C	45	64
BRCA	TCGA-C8-A12P	FLG2	SNP	Missense_Mutation	1	152326999	C	A	26	50
BRCA	TCGA-C8-A12P	OR6K6	SNP	Missense_Mutation	1	158724994	A	T	14	58
BRCA	TCGA-C8-A12P	PYHIN1	SNP	Missense_Mutation	1	158914788	C	A	30	51
BRCA	TCGA-C8-A12P	MRPS14	SNP	Missense_Mutation	1	174983888	G	A	38	62
BRCA	TCGA-C8-A12P	TNN	SNP	Missense_Mutation	1	175116123	G	C	45	75
BRCA	TCGA-C8-A12P	GLRX2	SNP	Silent	1	193074652	C	T	31	56
BRCA	TCGA-C8-A12P	UBR4	SNP	Missense_Mutation	1	19487440	C	T	32	98
BRCA	TCGA-C8-A12P	MARK1	SNP	Missense_Mutation	1	220804452	G	A	41	88
BRCA	TCGA-C8-A12P	RYR2	SNP	Silent	1	237532863	C	T	30	52
BRCA	TCGA-C8-A12P	OR2L8	SNP	Silent	1	248112345	G	A	45	41
BRCA	TCGA-C8-A12P	PDIK1L	SNP	Nonsense_Mutation	1	26448562	C	T	29	77
BRCA	TCGA-C8-A12P	BAI2	SNP	Missense_Mutation	1	32222176	G	T	46	62
BRCA	TCGA-C8-A12P	BAI2	SNP	Missense_Mutation	1	32222272	C	T	30	80
BRCA	TCGA-C8-A12P	KIAA0754	SNP	Missense_Mutation	1	39877270	G	A	33	64
BRCA	TCGA-C8-A12P	PTGER3	SNP	Missense_Mutation	1	71478130	A	T	2	77
BRCA	TCGA-C8-A12P	AK5	SNP	Missense_Mutation	1	77883374	G	A	45	71
BRCA	TCGA-C8-A12P	LPHN2	SNP	Missense_Mutation	1	82456485	G	A	37	74
BRCA	TCGA-C8-A12P	ITIH5	SNP	Missense_Mutation	10	7621758	G	A	38	62
BRCA	TCGA-C8-A12P	QSER1	SNP	Missense_Mutation	11	32955856	C	G	29	75
BRCA	TCGA-C8-A12P	LRP4	SNP	Missense_Mutation	11	46889599	T	C	60	65
BRCA	TCGA-C8-A12P	OR4C12	SNP	Missense_Mutation	11	50003262	G	A	45	69
BRCA	TCGA-C8-A12P	PRG2	SNP	Missense_Mutation	11	57156722	C	T	32	51
BRCA	TCGA-C8-A12P	OR5B17	SNP	Silent	11	58126186	G	A	44	53
BRCA	TCGA-C8-A12P	FAM111B	DEL	Frame_Shift_Del	11	58892505	GA	-	41	48
BRCA	TCGA-C8-A12P	DLG2	SNP	Missense_Mutation	11	83984277	G	A	37	69
BRCA	TCGA-C8-A12P	DEPDC4	SNP	Missense_Mutation	12	100660851	C	T	18	56
BRCA	TCGA-C8-A12P	TAS2R50	SNP	Splice_site	12	11138561	C	T	29	51
BRCA	TCGA-C8-A12P	HECTD4	SNP	Missense_Mutation	12	112645729	C	G	29	100
BRCA	TCGA-C8-A12P	C12orf77	SNP	Missense_Mutation	12	25148864	G	A	33	49
BRCA	TCGA-C8-A12P	LIMA1	SNP	Silent	12	50571543	C	A	29	55
BRCA	TCGA-C8-A12P	KRT80	SNP	Missense_Mutation	12	52574446	C	A	25	41
BRCA	TCGA-C8-A12P	DNAJC14	SNP	Silent	12	56221462	C	T	21	67
BRCA	TCGA-C8-A12P	LRP1	SNP	Missense_Mutation	12	57532316	G	A	37	96
BRCA	TCGA-C8-A12P	PZP	SNP	Missense_Mutation	12	9317892	C	G	25	79
BRCA	TCGA-C8-A12P	PCID2	SNP	Missense_Mutation	13	113851339	G	A	45	49
BRCA	TCGA-C8-A12P	RNASE3	SNP	Missense_Mutation	14	21360155	C	T	23	55
BRCA	TCGA-C8-A12P	AKAP6	SNP	Missense_Mutation	14	33293371	C	G	29	100
BRCA	TCGA-C8-A12P	TRIM9	SNP	Silent	14	51448553	C	G	30	76
BRCA	TCGA-C8-A12P	STYX	SNP	Missense_Mutation	14	53211599	G	A	46	90
BRCA	TCGA-C8-A12P	SYNE2	SNP	Missense_Mutation	14	64600841	C	T	32	75
BRCA	TCGA-C8-A12P	BTBD7	SNP	Missense_Mutation	14	93723687	T	G	54	93
BRCA	TCGA-C8-A12P	DDX24	SNP	Missense_Mutation	14	94526604	G	C	46	88
BRCA	TCGA-C8-A12P	HERC2	SNP	Silent	15	28419644	C	A	19	43
BRCA	TCGA-C8-A12P	SCG5	SNP	Missense_Mutation	15	32936016	G	A	45	83
BRCA	TCGA-C8-A12P	ELL3	SNP	Missense_Mutation	15	44066875	C	T	30	57
BRCA	TCGA-C8-A12P	ENSG00000212664	SNP	Nonsense_Mutation	15	71633928	G	A	40	62
BRCA	TCGA-C8-A12P	MESDC2	SNP	Missense_Mutation	15	81271807	C	G	30	89
BRCA	TCGA-C8-A12P	ERN2	SNP	Missense_Mutation	16	23722313	G	C	41	52
BRCA	TCGA-C8-A12P	FUK	SNP	Missense_Mutation	16	70497598	A	C	3	47
BRCA	TCGA-C8-A12P	ZNF821	SNP	Missense_Mutation	16	71894324	G	A	40	98
BRCA	TCGA-C8-A12P	EXOC7	SNP	Missense_Mutation	17	74084623	C	G	32	70
BRCA	TCGA-C8-A12P	TP53	SNP	Missense_Mutation	17	7577539	G	A	39	60
BRCA	TCGA-C8-A12P	ALOXE3	SNP	Missense_Mutation	17	8020169	C	T	30	75
BRCA	TCGA-C8-A12P	ANKRD30B	SNP	Silent	18	14843061	C	G	28	50
BRCA	TCGA-C8-A12P	EMR3	SNP	Missense_Mutation	19	14748956	G	A	33	75
BRCA	TCGA-C8-A12P	CHERP	SNP	Missense_Mutation	19	16652701	A	C	7	88
BRCA	TCGA-C8-A12P	CHERP	DEL	Frame_Shift_Del	19	16652708	ACTTGTAGTA	-	6	88
BRCA	TCGA-C8-A12P	ATP13A1	SNP	Splice_site	19	19756232	C	G	29	92
BRCA	TCGA-C8-A12P	ZNF536	SNP	Silent	19	31039202	C	T	21	84
BRCA	TCGA-C8-A12P	GRAMD1A	SNP	Silent	19	35504261	G	C	45	70
BRCA	TCGA-C8-A12P	GAPDHS	SNP	Silent	19	36035879	C	T	29	57
BRCA	TCGA-C8-A12P	MLL4	SNP	Missense_Mutation	19	36210398	G	C	33	68
BRCA	TCGA-C8-A12P	ZNF829	SNP	Missense_Mutation	19	37383084	C	G	32	51
BRCA	TCGA-C8-A12P	ZNF829	SNP	Splice_Site	19	37383374	C	G	32	82
BRCA	TCGA-C8-A12P	HKR1	SNP	Missense_Mutation	19	37853811	C	G	24	61
BRCA	TCGA-C8-A12P	HKR1	SNP	Missense_Mutation	19	37854586	C	T	29	87
BRCA	TCGA-C8-A12P	CREB3L3	SNP	Missense_Mutation	19	4171688	C	G	23	58
BRCA	TCGA-C8-A12P	SLC17A7	SNP	Missense_Mutation	19	49938086	G	A	45	77
BRCA	TCGA-C8-A12P	FAP	SNP	Missense_Mutation	2	163072487	G	C	37	70
BRCA	TCGA-C8-A12P	SCN1A	SNP	Missense_Mutation	2	166903316	C	G	29	100
BRCA	TCGA-C8-A12P	ORC2	SNP	Missense_Mutation	2	201778053	C	T	29	98
BRCA	TCGA-C8-A12P	RHOB	SNP	Silent	2	20647544	C	T	32	64
BRCA	TCGA-C8-A12P	ADCY3	SNP	Silent	2	25065185	G	A	40	47
BRCA	TCGA-C8-A12P	FOSL2	SNP	Silent	2	28635012	G	A	47	55
BRCA	TCGA-C8-A12P	TMC2	SNP	Missense_Mutation	20	2542550	G	A	37	79
BRCA	TCGA-C8-A12P	CPXM1	SNP	Missense_Mutation	20	2777840	G	A	45	66
BRCA	TCGA-C8-A12P	DOK5	SNP	Missense_Mutation	20	53260061	C	T	26	70
BRCA	TCGA-C8-A12P	BIRC7	SNP	Missense_Mutation	20	61867638	G	C	33	60
BRCA	TCGA-C8-A12P	CHRNA4	SNP	Missense_Mutation	20	61981765	C	T	27	99
BRCA	TCGA-C8-A12P	DOPEY2	SNP	Missense_Mutation	21	37665636	G	A	45	70
BRCA	TCGA-C8-A12P	TRPM2	SNP	Missense_Mutation	21	45815402	C	T	23	68
BRCA	TCGA-C8-A12P	CABIN1	SNP	Silent	22	24573644	C	G	22	46
BRCA	TCGA-C8-A12P	APOL4	SNP	Silent	22	36587925	C	T	32	31
BRCA	TCGA-C8-A12P	L3MBTL2	SNP	Silent	22	41626159	G	A	45	62
BRCA	TCGA-C8-A12P	CRELD2	SNP	Missense_Mutation	22	50319160	G	A	39	87
BRCA	TCGA-C8-A12P	GPRASP2	SNP	Missense_Mutation	23	101970776	G	C	45	71
BRCA	TCGA-C8-A12P	ACTRT1	SNP	Missense_Mutation	23	127185866	A	G	3	82
BRCA	TCGA-C8-A12P	IGSF1	SNP	Silent	23	130412089	G	T	45	50
BRCA	TCGA-C8-A12P	EGFL6	SNP	Silent	23	13636126	C	A	22	55
BRCA	TCGA-C8-A12P	ATP6AP1	SNP	Silent	23	153660671	C	T	29	56
BRCA	TCGA-C8-A12P	UBA1	SNP	Missense_Mutation	23	47073983	G	A	46	96
BRCA	TCGA-C8-A12P	HDAC6	SNP	Missense_Mutation	23	48681990	G	A	37	31
BRCA	TCGA-C8-A12P	AKAP4	SNP	Missense_Mutation	23	49957750	A	T	4	51
BRCA	TCGA-C8-A12P	WNK3	SNP	Silent	23	54263733	G	A	45	62
BRCA	TCGA-C8-A12P	KIF4A	SNP	Missense_Mutation	23	69625735	G	A	33	70
BRCA	TCGA-C8-A12P	CXorf65	SNP	Missense_Mutation	23	70324637	G	A	41	71
BRCA	TCGA-C8-A12P	FLJ44635	SNP	Missense_Mutation	23	71379809	A	G	10	52
BRCA	TCGA-C8-A12P	TBL1X	SNP	Nonsense_Mutation	23	9621720	C	T	27	39
BRCA	TCGA-C8-A12P	SLCO2A1	SNP	Missense_Mutation	3	133664066	C	G	27	51
BRCA	TCGA-C8-A12P	ESYT3	SNP	Missense_Mutation	3	138180987	G	A	40	90
BRCA	TCGA-C8-A12P	TRIM42	SNP	Missense_Mutation	3	140397118	G	C	33	65
BRCA	TCGA-C8-A12P	HTR3D	SNP	Silent	3	183755826	G	A	44	64
BRCA	TCGA-C8-A12P	SACM1L	SNP	Missense_Mutation	3	45746631	G	C	33	63
BRCA	TCGA-C8-A12P	SETD2	DEL	Frame_Shift_Del	3	47058665	T	-	59	90
BRCA	TCGA-C8-A12P	PHF17	SNP	Missense_Mutation	4	129770145	G	A	45	98
BRCA	TCGA-C8-A12P	PDGFC	SNP	Silent	4	157689125	G	A	33	100
BRCA	TCGA-C8-A12P	FAM218A	SNP	Missense_Mutation	4	165878596	G	C	33	51
BRCA	TCGA-C8-A12P	WDR17	SNP	Missense_Mutation	4	177046468	C	T	26	82
BRCA	TCGA-C8-A12P	SULT1E1	SNP	Missense_Mutation	4	70709918	C	T	31	58
BRCA	TCGA-C8-A12P	PTPN13	SNP	Missense_Mutation	4	87696433	G	A	33	71
BRCA	TCGA-C8-A12P	PJA2	SNP	Missense_Mutation	5	108714379	T	A	63	62
BRCA	TCGA-C8-A12P	ZRSR1	SNP	Missense_Mutation	5	112227496	G	C	33	51
BRCA	TCGA-C8-A12P	PCDHGA6	SNP	Nonsense_Mutation	5	140755127	G	T	33	69
BRCA	TCGA-C8-A12P	LRRC14B	SNP	Missense_Mutation	5	192381	C	T	31	72
BRCA	TCGA-C8-A12P	PRKAA1	SNP	Silent	5	40798178	G	A	37	65
BRCA	TCGA-C8-A12P	C7	SNP	Missense_Mutation	5	40959700	G	C	33	83
BRCA	TCGA-C8-A12P	VCAN	SNP	Missense_Mutation	5	82833462	C	G	32	52
BRCA	TCGA-C8-A12P	RASA1	SNP	Missense_Mutation	5	86633865	C	G	17	100
BRCA	TCGA-C8-A12P	L3MBTL3	SNP	Missense_Mutation	6	130370912	C	G	30	61
BRCA	TCGA-C8-A12P	ALDH8A1	SNP	Missense_Mutation	6	135239645	C	T	23	100
BRCA	TCGA-C8-A12P	PDE10A	SNP	Silent	6	165863749	C	T	29	52
BRCA	TCGA-C8-A12P	NUP153	SNP	Missense_Mutation	6	17637836	T	A	60	91
BRCA	TCGA-C8-A12P	BTN2A2	SNP	Missense_Mutation	6	26388255	C	A	26	63
BRCA	TCGA-C8-A12P	OR2B2	SNP	Missense_Mutation	6	27879467	C	T	19	44
BRCA	TCGA-C8-A12P	CD109	SNP	Missense_Mutation	6	74473391	C	G	32	79
BRCA	TCGA-C8-A12P	LAMB1	SNP	Missense_Mutation	7	107601001	G	T	45	82
BRCA	TCGA-C8-A12P	FLNC	SNP	Missense_Mutation	7	128480154	T	C	56	92
BRCA	TCGA-C8-A12P	MKRN1	SNP	Missense_Mutation	7	140154430	C	T	31	97
BRCA	TCGA-C8-A12P	BRAF	SNP	Nonsense_Mutation	7	140500217	C	A	32	98
BRCA	TCGA-C8-A12P	RNF32	SNP	Missense_Mutation	7	156437412	G	C	33	72
BRCA	TCGA-C8-A12P	INMT	SNP	Missense_Mutation	7	30793370	A	T	12	62
BRCA	TCGA-C8-A12P	AVL9	SNP	Missense_Mutation	7	32598959	G	C	33	48
BRCA	TCGA-C8-A12P	BBS9	SNP	Missense_Mutation	7	33388717	A	C	1	59
BRCA	TCGA-C8-A12P	POU6F2	SNP	Silent	7	39503976	T	C	50	55
BRCA	TCGA-C8-A12P	GRB10	SNP	Missense_Mutation	7	50680488	C	T	32	99
BRCA	TCGA-C8-A12P	TBL2	SNP	Missense_Mutation	7	72984983	G	C	45	95
BRCA	TCGA-C8-A12P	ICA1	SNP	Silent	7	8167561	A	G	2	26
BRCA	TCGA-C8-A12P	ABCB1	SNP	Silent	7	87225124	T	C	56	59
BRCA	TCGA-C8-A12P	SLC25A32	SNP	Missense_Mutation	8	104419920	G	C	45	99
BRCA	TCGA-C8-A12P	PKHD1L1	DEL	Frame_Shift_Del	8	110463293	CT	-	20	58
BRCA	TCGA-C8-A12P	MTMR9	SNP	Missense_Mutation	8	11180245	G	A	37	96
BRCA	TCGA-C8-A12P	CSMD3	SNP	Missense_Mutation	8	113314091	G	A	34	79
BRCA	TCGA-C8-A12P	CYP11B2	SNP	Missense_Mutation	8	143993470	C	A	30	75
BRCA	TCGA-C8-A12P	TOX	SNP	Splice_Site	8	59764365	C	G	32	91
BRCA	TCGA-C8-A12P	LY96	SNP	Silent	8	74939031	G	A	45	51
BRCA	TCGA-C8-A12P	WDR31	SNP	Silent	9	116094279	C	T	29	54
BRCA	TCGA-C8-A12P	TTC16	SNP	Missense_Mutation	9	130486524	C	G	18	87
BRCA	TCGA-C8-A12P	SURF2	SNP	Silent	9	136227991	C	T	29	51
BRCA	TCGA-C8-A12P	RPS6	SNP	Missense_Mutation	9	19378776	C	G	32	55
BRCA	TCGA-C8-A12P	DDX58	SNP	Silent	9	32491384	A	G	16	39
BRCA	TCGA-C8-A12P	UBAP2	SNP	Nonsense_Mutation	9	33944419	G	A	47	88
BRCA	TCGA-C8-A12P	TLN1	SNP	Missense_Mutation	9	35711069	C	T	29	100
BRCA	TCGA-C8-A12P	ECM2	SNP	Missense_Mutation	9	95263288	G	A	39	83
BRCA	TCGA-C8-A12Q	SETDB1	SNP	Missense_Mutation	1	150923915	C	T	32	98
BRCA	TCGA-C8-A12Q	EFNA3	SNP	Missense_Mutation	1	155058975	G	T	42	61
BRCA	TCGA-C8-A12Q	SCAMP3	SNP	Missense_Mutation	1	155231906	C	T	31	64
BRCA	TCGA-C8-A12Q	INSRR	SNP	Silent	1	156823931	G	A	34	94
BRCA	TCGA-C8-A12Q	SPTA1	SNP	Missense_Mutation	1	158644181	C	T	29	54
BRCA	TCGA-C8-A12Q	LGR6	SNP	Missense_Mutation	1	202266674	C	T	26	85
BRCA	TCGA-C8-A12Q	GNPAT	SNP	Silent	1	231396288	C	T	30	61
BRCA	TCGA-C8-A12Q	SRRM1	SNP	Missense_Mutation	1	24978962	G	A	33	95
BRCA	TCGA-C8-A12Q	ADPRHL2	SNP	Missense_Mutation	1	36557241	G	A	33	80
BRCA	TCGA-C8-A12Q	BCAR3	SNP	Silent	1	94048401	C	T	22	60
BRCA	TCGA-C8-A12Q	ACTR1A	SNP	Missense_Mutation	10	104241877	C	T	30	100
BRCA	TCGA-C8-A12Q	C10orf53	SNP	Missense_Mutation	10	50916467	A	G	7	50
BRCA	TCGA-C8-A12Q	C10orf12	SNP	Missense_Mutation	10	98742331	C	T	29	69
BRCA	TCGA-C8-A12Q	ZDHHC13	SNP	Splice_site	11	19169220	G	A	39	99
BRCA	TCGA-C8-A12Q	TRIM21	SNP	Missense_Mutation	11	4411328	C	A	32	71
BRCA	TCGA-C8-A12Q	OR5M3	SNP	Silent	11	56237827	G	A	45	53
BRCA	TCGA-C8-A12Q	TRIM5	SNP	Silent	11	5701120	T	C	59	45
BRCA	TCGA-C8-A12Q	ADRBK1	SNP	Missense_Mutation	11	67050618	C	G	30	94
BRCA	TCGA-C8-A12Q	ME3	SNP	Missense_Mutation	11	86160981	C	T	32	78
BRCA	TCGA-C8-A12Q	NCOR2	SNP	Splice_site	12	124979693	C	G	23	73
BRCA	TCGA-C8-A12Q	DHX37	SNP	Missense_Mutation	12	125461919	G	A	42	98
BRCA	TCGA-C8-A12Q	RIMBP2	SNP	Silent	12	130926616	G	T	35	57
BRCA	TCGA-C8-A12Q	DCTN2	SNP	Missense_Mutation	12	57925870	G	A	41	49
BRCA	TCGA-C8-A12Q	LRRIQ1	SNP	Missense_Mutation	12	85450282	G	C	33	49
BRCA	TCGA-C8-A12Q	DYNC1H1	SNP	Splice_Site	14	102516407	G	A	35	100
BRCA	TCGA-C8-A12Q	PRMT5	SNP	Silent	14	23395360	G	A	45	50
BRCA	TCGA-C8-A12Q	REC8	SNP	Silent	14	24644763	C	T	32	51
BRCA	TCGA-C8-A12Q	MOAP1	SNP	Nonsense_Mutation	14	93650053	C	A	32	70
BRCA	TCGA-C8-A12Q	ALDH1A3	SNP	Missense_Mutation	15	101438383	C	G	19	33
BRCA	TCGA-C8-A12Q	BAHD1	SNP	Missense_Mutation	15	40750766	G	A	45	87
BRCA	TCGA-C8-A12Q	PLA2G4F	SNP	Missense_Mutation	15	42446363	G	C	33	57
BRCA	TCGA-C8-A12Q	ZFP106	SNP	Splice_site	15	42749157	G	A	37	78
BRCA	TCGA-C8-A12Q	MYO5A	SNP	Missense_Mutation	15	52652227	C	T	31	98
BRCA	TCGA-C8-A12Q	VPS13C	SNP	Missense_Mutation	15	62239428	C	A	29	74
BRCA	TCGA-C8-A12Q	TLN2	SNP	Missense_Mutation	15	63031644	C	T	18	100
BRCA	TCGA-C8-A12Q	ZNF267	SNP	Silent	16	31927082	T	C	60	45
BRCA	TCGA-C8-A12Q	MEFV	SNP	Missense_Mutation	16	3298943	C	A	31	55
BRCA	TCGA-C8-A12Q	SHCBP1	SNP	Missense_Mutation	16	46633858	A	C	8	60
BRCA	TCGA-C8-A12Q	N4BP1	SNP	Missense_Mutation	16	48585301	C	T	29	97
BRCA	TCGA-C8-A12Q	PAPD5	SNP	Missense_Mutation	16	50258849	G	A	33	86
BRCA	TCGA-C8-A12Q	NFE2L1	SNP	Nonsense_Mutation	17	46128581	C	G	29	76
BRCA	TCGA-C8-A12Q	CEP95	SNP	Silent	17	62533819	C	T	30	64
BRCA	TCGA-C8-A12Q	MRPL38	SNP	Missense_Mutation	17	73898220	A	G	4	60
BRCA	TCGA-C8-A12Q	TP53	SNP	Missense_Mutation	17	7578236	A	T	14	88
BRCA	TCGA-C8-A12Q	ATP5A1	SNP	Missense_Mutation	18	43668162	C	G	29	99
BRCA	TCGA-C8-A12Q	ZNF700	SNP	Silent	19	12059454	C	T	30	42
BRCA	TCGA-C8-A12Q	HOOK2	SNP	Missense_Mutation	19	12885536	C	T	31	76
BRCA	TCGA-C8-A12Q	CALR3	SNP	Missense_Mutation	19	16593522	C	A	26	77
BRCA	TCGA-C8-A12Q	ATP8B3	SNP	Silent	19	1796813	C	A	25	51
BRCA	TCGA-C8-A12Q	ZNF85	SNP	Silent	19	21116931	G	A	33	49
BRCA	TCGA-C8-A12Q	ZNF208	SNP	Silent	19	22155448	C	T	32	46
BRCA	TCGA-C8-A12Q	MATK	SNP	Missense_Mutation	19	3784877	G	C	42	56
BRCA	TCGA-C8-A12Q	PSG6	SNP	Missense_Mutation	19	43414651	G	C	45	49
BRCA	TCGA-C8-A12Q	RTN2	SNP	Missense_Mutation	19	45992785	T	C	59	51
BRCA	TCGA-C8-A12Q	ZNF611	SNP	Missense_Mutation	19	53209290	C	G	32	62
BRCA	TCGA-C8-A12Q	GP6	SNP	Silent	19	55526128	G	A	37	50
BRCA	TCGA-C8-A12Q	PEG3	SNP	Nonsense_Mutation	19	57326917	G	A	37	57
BRCA	TCGA-C8-A12Q	XAB2	SNP	Silent	19	7687717	G	A	38	49
BRCA	TCGA-C8-A12Q	UXS1	SNP	Missense_Mutation	2	106780148	C	T	32	85
BRCA	TCGA-C8-A12Q	BAZ2B	SNP	Nonsense_Mutation	2	160295653	G	C	45	79
BRCA	TCGA-C8-A12Q	ITSN2	SNP	Missense_Mutation	2	24484451	G	C	33	89
BRCA	TCGA-C8-A12Q	MSH6	SNP	Missense_Mutation	2	48027214	C	G	29	64
BRCA	TCGA-C8-A12Q	LOC400986	SNP	Missense_Mutation	2	96585654	G	T	48	49
BRCA	TCGA-C8-A12Q	DTD1	SNP	Missense_Mutation	20	18724832	G	A	37	80
BRCA	TCGA-C8-A12Q	SULF2	SNP	Missense_Mutation	20	46385992	C	T	27	91
BRCA	TCGA-C8-A12Q	ADRM1	SNP	Silent	20	60883775	G	A	37	46
BRCA	TCGA-C8-A12Q	ZNF280B	SNP	Nonsense_Mutation	22	22842274	G	A	45	66
BRCA	TCGA-C8-A12Q	ZNF280B	SNP	Missense_Mutation	22	22843589	G	C	33	56
BRCA	TCGA-C8-A12Q	PRAME	SNP	Missense_Mutation	22	22892625	C	T	31	39
BRCA	TCGA-C8-A12Q	SLC2A11	SNP	Nonsense_Mutation	22	24210689	G	T	45	66
BRCA	TCGA-C8-A12Q	XBP1	DEL	Frame_Shift_Del	22	29191398	AC	-	10	76
BRCA	TCGA-C8-A12Q	GGA1	SNP	Missense_Mutation	22	38019460	G	A	37	83
BRCA	TCGA-C8-A12Q	EIF3L	SNP	Missense_Mutation	22	38266249	C	T	31	66
BRCA	TCGA-C8-A12Q	XRCC6	SNP	Missense_Mutation	22	42018039	G	C	37	61
BRCA	TCGA-C8-A12Q	XRCC6	SNP	Missense_Mutation	22	42024199	G	A	45	98
BRCA	TCGA-C8-A12Q	AFF2	SNP	Missense_Mutation	23	147743846	C	A	22	77
BRCA	TCGA-C8-A12Q	SYAP1	SNP	Silent	23	16774820	C	A	29	66
BRCA	TCGA-C8-A12Q	ZPLD1	SNP	Nonsense_Mutation	3	102181129	C	G	29	96
BRCA	TCGA-C8-A12Q	ITGB5	SNP	Silent	3	124578168	G	T	45	61
BRCA	TCGA-C8-A12Q	IFT80	SNP	Silent	3	159976355	T	A	51	40
BRCA	TCGA-C8-A12Q	PLCD1	SNP	Silent	3	38051649	G	A	45	55
BRCA	TCGA-C8-A12Q	DNAH1	SNP	Silent	3	52360796	C	T	29	49
BRCA	TCGA-C8-A12Q	PROS1	SNP	Missense_Mutation	3	93629501	G	A	45	64
BRCA	TCGA-C8-A12Q	CAMK1	SNP	Missense_Mutation	3	9799335	G	A	38	48
BRCA	TCGA-C8-A12Q	C4orf29	SNP	Silent	4	128938554	G	C	45	72
BRCA	TCGA-C8-A12Q	BOD1L1	SNP	Missense_Mutation	4	13605023	C	G	29	51
BRCA	TCGA-C8-A12Q	BOD1L1	SNP	Missense_Mutation	4	13605203	C	G	32	47
BRCA	TCGA-C8-A12Q	SH3TC1	SNP	Missense_Mutation	4	8206976	C	T	30	64
BRCA	TCGA-C8-A12Q	ITK	SNP	Missense_Mutation	5	156675970	C	A	28	54
BRCA	TCGA-C8-A12Q	C5orf42	SNP	Missense_Mutation	5	37213766	C	T	19	52
BRCA	TCGA-C8-A12Q	C5orf42	SNP	Missense_Mutation	5	37224748	C	T	29	79
BRCA	TCGA-C8-A12Q	GZMK	INS	Frame_Shift_Ins	5	54329596	-	AT	45	88
BRCA	TCGA-C8-A12Q	GPR98	SNP	Missense_Mutation	5	90077371	G	C	45	66
BRCA	TCGA-C8-A12Q	MLLT4	SNP	Missense_Mutation	6	168319551	G	T	48	100
BRCA	TCGA-C8-A12Q	GPSM3	SNP	Missense_Mutation	6	32159275	C	A	28	64
BRCA	TCGA-C8-A12Q	LRRC73	SNP	Silent	6	43476523	G	A	41	58
BRCA	TCGA-C8-A12Q	DEFB114	SNP	Missense_Mutation	6	49928136	C	A	29	54
BRCA	TCGA-C8-A12Q	COL12A1	SNP	Missense_Mutation	6	75893674	G	A	45	83
BRCA	TCGA-C8-A12Q	CDHR3	SNP	Missense_Mutation	7	105660837	G	C	45	85
BRCA	TCGA-C8-A12Q	PHF14	SNP	Missense_Mutation	7	11030350	G	C	33	73
BRCA	TCGA-C8-A12Q	HECW1	SNP	Missense_Mutation	7	43590177	G	A	38	100
BRCA	TCGA-C8-A12Q	CHCHD2	SNP	Missense_Mutation	7	56171926	G	A	36	99
BRCA	TCGA-C8-A12Q	PHTF2	SNP	Missense_Mutation	7	77531171	C	T	23	65
BRCA	TCGA-C8-A12Q	LOC100287016	SNP	Missense_Mutation	8	74896789	G	C	40	78
BRCA	TCGA-C8-A12Q	COL15A1	SNP	Missense_Mutation	9	101778269	T	A	51	49
BRCA	TCGA-C8-A12Q	RNF20	SNP	Missense_Mutation	9	104323426	C	G	29	98
BRCA	TCGA-C8-A12Q	GOLGA1	SNP	Silent	9	127660909	T	C	56	56
BRCA	TCGA-C8-A12Q	PMPCA	SNP	Missense_Mutation	9	139309033	G	A	45	96
BRCA	TCGA-C8-A12Q	UBAP1	SNP	Missense_Mutation	9	34241364	C	T	21	99
BRCA	TCGA-C8-A12T	SARS	SNP	Missense_Mutation	1	109779045	G	T	45	99
BRCA	TCGA-C8-A12T	PTPN22	SNP	Missense_Mutation	1	114397122	C	A	29	94
BRCA	TCGA-C8-A12T	CSDE1	SNP	Missense_Mutation	1	115276687	G	A	45	86
BRCA	TCGA-C8-A12T	ASH1L	SNP	Missense_Mutation	1	155450397	G	C	33	68
BRCA	TCGA-C8-A12T	IQGAP3	SNP	Missense_Mutation	1	156530801	C	T	18	51
BRCA	TCGA-C8-A12T	C1orf114	SNP	Missense_Mutation	1	169390881	G	T	33	61
BRCA	TCGA-C8-A12T	CACNA1E	SNP	Missense_Mutation	1	181680184	C	T	23	75
BRCA	TCGA-C8-A12T	ASPM	SNP	Missense_Mutation	1	197061060	C	T	18	44
BRCA	TCGA-C8-A12T	SDCCAG8	SNP	Missense_Mutation	1	243579083	G	A	41	91
BRCA	TCGA-C8-A12T	NLRP3	SNP	Missense_Mutation	1	247587541	C	G	24	58
BRCA	TCGA-C8-A12T	ARID1A	SNP	Nonsense_Mutation	1	27057874	C	T	29	83
BRCA	TCGA-C8-A12T	MACF1	SNP	Missense_Mutation	1	39751334	A	T	14	77
BRCA	TCGA-C8-A12T	MAST2	SNP	Missense_Mutation	1	46488611	C	G	30	79
BRCA	TCGA-C8-A12T	ORC1	SNP	Missense_Mutation	1	52861727	C	G	30	64
BRCA	TCGA-C8-A12T	SLC45A1	SNP	Missense_Mutation	1	8395594	C	A	30	58
BRCA	TCGA-C8-A12T	SH3PXD2A	SNP	Missense_Mutation	10	105377012	C	G	29	78
BRCA	TCGA-C8-A12T	CDC123	SNP	Missense_Mutation	10	12291674	C	T	32	96
BRCA	TCGA-C8-A12T	NSMCE4A	SNP	Missense_Mutation	10	123720991	G	T	45	62
BRCA	TCGA-C8-A12T	ACADSB	SNP	Missense_Mutation	10	124802613	C	T	29	83
BRCA	TCGA-C8-A12T	ACADSB	SNP	Missense_Mutation	10	124812623	C	T	57	78
BRCA	TCGA-C8-A12T	METTL10	SNP	Missense_Mutation	10	126450881	G	A	37	30
BRCA	TCGA-C8-A12T	VIM	SNP	Missense_Mutation	10	17278368	G	C	33	99
BRCA	TCGA-C8-A12T	SEC24C	SNP	Missense_Mutation	10	75525340	C	G	29	72
BRCA	TCGA-C8-A12T	DYDC1	SNP	Missense_Mutation	10	82111696	C	T	29	54
BRCA	TCGA-C8-A12T	FAS	SNP	Missense_Mutation	10	90773881	G	A	45	64
BRCA	TCGA-C8-A12T	LGI1	SNP	Missense_Mutation	10	95518519	C	G	30	93
BRCA	TCGA-C8-A12T	DDI1	SNP	Missense_Mutation	11	103908037	C	T	19	64
BRCA	TCGA-C8-A12T	ZBTB16	SNP	Missense_Mutation	11	113934294	C	T	19	100
BRCA	TCGA-C8-A12T	MICAL2	SNP	Missense_Mutation	11	12241781	G	C	41	86
BRCA	TCGA-C8-A12T	ROBO4	SNP	Missense_Mutation	11	124761564	G	A	41	79
BRCA	TCGA-C8-A12T	FAM118B	SNP	Silent	11	126120562	C	G	32	59
BRCA	TCGA-C8-A12T	SRPR	SNP	Missense_Mutation	11	126133864	C	T	29	99
BRCA	TCGA-C8-A12T	MUC5B	SNP	Silent	11	1269972	C	T	29	48
BRCA	TCGA-C8-A12T	PRDM10	SNP	Missense_Mutation	11	129775573	G	A	46	71
BRCA	TCGA-C8-A12T	ARHGAP1	SNP	Silent	11	46702881	G	A	45	77
BRCA	TCGA-C8-A12T	GLT8D2	SNP	Missense_Mutation	12	104388153	T	A	51	79
BRCA	TCGA-C8-A12T	RFX4	SNP	Missense_Mutation	12	107083069	C	G	32	97
BRCA	TCGA-C8-A12T	BTBD11	SNP	Missense_Mutation	12	108008853	C	T	29	99
BRCA	TCGA-C8-A12T	WSCD2	SNP	Missense_Mutation	12	108620839	G	A	45	95
BRCA	TCGA-C8-A12T	SELPLG	SNP	Missense_Mutation	12	109017614	G	A	40	54
BRCA	TCGA-C8-A12T	GCN1L1	SNP	Silent	12	120582590	C	T	29	64
BRCA	TCGA-C8-A12T	B3GNT4	SNP	Missense_Mutation	12	122691843	C	T	29	98
BRCA	TCGA-C8-A12T	OR8S1	SNP	Silent	12	48920158	G	A	45	64
BRCA	TCGA-C8-A12T	KRT1	SNP	Silent	12	53071193	G	A	37	57
BRCA	TCGA-C8-A12T	ERBB3	SNP	Missense_Mutation	12	56478826	C	G	32	56
BRCA	TCGA-C8-A12T	A2ML1	SNP	Silent	12	8995942	C	T	29	54
BRCA	TCGA-C8-A12T	TPP2	SNP	Missense_Mutation	13	103287966	G	T	36	95
BRCA	TCGA-C8-A12T	TMCO3	SNP	Missense_Mutation	13	114188508	G	C	33	93
BRCA	TCGA-C8-A12T	POLR1D	SNP	Missense_Mutation	13	28197278	G	C	33	56
BRCA	TCGA-C8-A12T	BRCA2	SNP	Missense_Mutation	13	32971062	G	C	33	59
BRCA	TCGA-C8-A12T	KL	SNP	Missense_Mutation	13	33635518	G	A	47	100
BRCA	TCGA-C8-A12T	DYNC1H1	SNP	Missense_Mutation	14	102496269	G	C	33	79
BRCA	TCGA-C8-A12T	AHNAK2	SNP	Silent	14	105409722	G	A	39	38
BRCA	TCGA-C8-A12T	AHNAK2	SNP	Missense_Mutation	14	105420515	C	T	30	36
BRCA	TCGA-C8-A12T	NDRG2	SNP	Missense_Mutation	14	21486365	G	C	45	93
BRCA	TCGA-C8-A12T	MYH7	SNP	Missense_Mutation	14	23884421	C	T	27	100
BRCA	TCGA-C8-A12T	NOP9	SNP	Missense_Mutation	14	24772295	G	C	45	70
BRCA	TCGA-C8-A12T	SEC23A	SNP	Missense_Mutation	14	39545233	G	A	35	100
BRCA	TCGA-C8-A12T	YLPM1	SNP	Missense_Mutation	14	75265199	G	A	33	70
BRCA	TCGA-C8-A12T	TMED10	SNP	Missense_Mutation	14	75601659	G	C	33	89
BRCA	TCGA-C8-A12T	RYR3	SNP	Missense_Mutation	15	33988430	G	A	41	73
BRCA	TCGA-C8-A12T	STARD9	DEL	Frame_Shift_Del	15	42977168	G	-	47	46
BRCA	TCGA-C8-A12T	AP4E1	SNP	Nonsense_Mutation	15	51291329	C	T	29	78
BRCA	TCGA-C8-A12T	ZNF609	SNP	Silent	15	64966802	C	T	29	62
BRCA	TCGA-C8-A12T	DET1	SNP	Missense_Mutation	15	89056368	G	C	33	60
BRCA	TCGA-C8-A12T	TEKT5	SNP	Silent	16	10783850	C	T	32	53
BRCA	TCGA-C8-A12T	TBC1D24	SNP	Silent	16	2549400	C	T	29	64
BRCA	TCGA-C8-A12T	GLYR1	SNP	Missense_Mutation	16	4861729	C	T	31	100
BRCA	TCGA-C8-A12T	GPR114	SNP	Missense_Mutation	16	57597076	A	C	6	47
BRCA	TCGA-C8-A12T	PIGQ	SNP	Nonsense_Mutation	16	633504	C	G	29	51
BRCA	TCGA-C8-A12T	CTCF	SNP	Nonsense_Mutation	16	67655431	G	T	33	100
BRCA	TCGA-C8-A12T	PLA2G15	SNP	Silent	16	68283257	C	A	32	48
BRCA	TCGA-C8-A12T	ZFHX3	SNP	Nonsense_Mutation	16	72827828	G	C	45	100
BRCA	TCGA-C8-A12T	ZFHX3	SNP	Missense_Mutation	16	72832052	G	A	33	87
BRCA	TCGA-C8-A12T	CMIP	SNP	Missense_Mutation	16	81739122	C	T	31	72
BRCA	TCGA-C8-A12T	MYH3	SNP	Silent	17	10558307	G	A	37	51
BRCA	TCGA-C8-A12T	ARHGAP44	SNP	Silent	17	12799747	G	A	45	60
BRCA	TCGA-C8-A12T	PRPF8	SNP	Missense_Mutation	17	1578489	G	A	42	100
BRCA	TCGA-C8-A12T	STAT5B	SNP	Splice_Site	17	40376887	C	T	32	95
BRCA	TCGA-C8-A12T	BRCA1	SNP	Missense_Mutation	17	41243518	C	G	29	57
BRCA	TCGA-C8-A12T	PLSCR3	SNP	Missense_Mutation	17	7296197	G	C	33	57
BRCA	TCGA-C8-A12T	ARHGEF15	SNP	Missense_Mutation	17	8215677	C	T	30	62
BRCA	TCGA-C8-A12T	ENSG00000235297	SNP	Missense_Mutation	18	72057461	G	C	45	51
BRCA	TCGA-C8-A12T	PDE4A	SNP	Silent	19	10568682	C	T	29	64
BRCA	TCGA-C8-A12T	TNPO2	SNP	Nonsense_Mutation	19	12830080	G	C	45	94
BRCA	TCGA-C8-A12T	UNC13A	SNP	Silent	19	17756583	G	A	38	15
BRCA	TCGA-C8-A12T	ELL	SNP	Missense_Mutation	19	18561569	C	A	31	83
BRCA	TCGA-C8-A12T	TULP2	SNP	Silent	19	49391390	G	A	40	58
BRCA	TCGA-C8-A12T	ZNF841	SNP	Nonsense_Mutation	19	52580298	G	A	45	53
BRCA	TCGA-C8-A12T	TSEN34	SNP	Missense_Mutation	19	54695795	C	T	31	56
BRCA	TCGA-C8-A12T	OR7G3	SNP	Missense_Mutation	19	9237482	C	T	19	33
BRCA	TCGA-C8-A12T	OR7E24	SNP	Silent	19	9362661	C	T	17	50
BRCA	TCGA-C8-A12T	ZNF560	SNP	Silent	19	9584909	C	G	29	54
BRCA	TCGA-C8-A12T	NEB	SNP	Splice_site	2	152350381	C	G	18	68
BRCA	TCGA-C8-A12T	FAM49A	SNP	Silent	2	16740779	G	C	33	56
BRCA	TCGA-C8-A12T	UBR3	SNP	Nonsense_Mutation	2	170732316	C	G	29	76
BRCA	TCGA-C8-A12T	CLK1	SNP	Missense_Mutation	2	201722462	G	C	45	84
BRCA	TCGA-C8-A12T	VRK2	SNP	Missense_Mutation	2	58350248	G	C	33	100
BRCA	TCGA-C8-A12T	TMEM131	SNP	Missense_Mutation	2	98543924	C	G	32	73
BRCA	TCGA-C8-A12T	CSTL1	SNP	Silent	20	23424675	G	A	45	52
BRCA	TCGA-C8-A12T	DNTTIP1	SNP	Missense_Mutation	20	44429770	C	A	30	67
BRCA	TCGA-C8-A12T	COL20A1	SNP	Silent	20	61936827	C	T	26	53
BRCA	TCGA-C8-A12T	TRPM2	SNP	Silent	21	45811190	C	T	29	64
BRCA	TCGA-C8-A12T	SPECC1L	SNP	Missense_Mutation	22	24698308	G	A	43	83
BRCA	TCGA-C8-A12T	TTC28	SNP	Missense_Mutation	22	28503882	G	C	45	57
BRCA	TCGA-C8-A12T	ASCC2	SNP	Silent	22	30189366	G	A	40	44
BRCA	TCGA-C8-A12T	DEPDC5	SNP	Missense_Mutation	22	32272223	G	T	33	83
BRCA	TCGA-C8-A12T	SLC16A8	SNP	Silent	22	38474563	G	A	38	33
BRCA	TCGA-C8-A12T	HTATSF1	SNP	Missense_Mutation	23	135593306	G	A	45	72
BRCA	TCGA-C8-A12T	MXRA5	SNP	Missense_Mutation	23	3239762	C	T	32	55
BRCA	TCGA-C8-A12T	CASK	SNP	Nonsense_Mutation	23	41646461	G	C	45	95
BRCA	TCGA-C8-A12T	SSX3	SNP	Missense_Mutation	23	48214153	G	C	33	51
BRCA	TCGA-C8-A12T	CACNA1F	SNP	Missense_Mutation	23	49083480	G	C	45	71
BRCA	TCGA-C8-A12T	FOXO4	SNP	Missense_Mutation	23	70321046	T	G	59	49
BRCA	TCGA-C8-A12T	ROPN1B	SNP	Missense_Mutation	3	125701143	G	A	45	63
BRCA	TCGA-C8-A12T	DNAJC13	SNP	Missense_Mutation	3	132231857	G	C	45	98
BRCA	TCGA-C8-A12T	MSL2	SNP	Missense_Mutation	3	135871199	G	A	33	82
BRCA	TCGA-C8-A12T	TBC1D5	SNP	Missense_Mutation	3	17208372	C	G	32	96
BRCA	TCGA-C8-A12T	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-C8-A12T	TRA2B	SNP	Missense_Mutation	3	185639893	T	A	52	79
BRCA	TCGA-C8-A12T	OSBPL10	SNP	Missense_Mutation	3	31712404	G	C	33	87
BRCA	TCGA-C8-A12T	GABRR3	SNP	Silent	3	97731406	A	G	13	58
BRCA	TCGA-C8-A12T	PCDH18	SNP	Missense_Mutation	4	138442365	G	A	45	72
BRCA	TCGA-C8-A12T	PCDH18	SNP	Silent	4	138452906	G	A	33	77
BRCA	TCGA-C8-A12T	FAM160A1	SNP	Silent	4	152499180	G	A	33	71
BRCA	TCGA-C8-A12T	SLIT2	SNP	Missense_Mutation	4	20487849	G	T	33	85
BRCA	TCGA-C8-A12T	ENSG00000205794	SNP	Missense_Mutation	4	40044934	G	C	33	64
BRCA	TCGA-C8-A12T	GK2	SNP	Nonsense_Mutation	4	80329028	G	T	48	54
BRCA	TCGA-C8-A12T	ZRSR1	SNP	Missense_Mutation	5	112228531	G	A	41	58
BRCA	TCGA-C8-A12T	ADAMTS2	SNP	Silent	5	178699937	G	A	37	40
BRCA	TCGA-C8-A12T	EGFLAM	SNP	Missense_Mutation	5	38407978	C	G	29	79
BRCA	TCGA-C8-A12T	DHX29	SNP	Silent	5	54565406	G	A	41	54
BRCA	TCGA-C8-A12T	AMD1	SNP	Missense_Mutation	6	111214197	G	A	45	97
BRCA	TCGA-C8-A12T	PERP	SNP	Missense_Mutation	6	138417551	G	C	35	77
BRCA	TCGA-C8-A12T	POM121L2	SNP	Missense_Mutation	6	27278941	G	T	44	51
BRCA	TCGA-C8-A12T	EYS	SNP	Missense_Mutation	6	65300723	C	T	29	48
BRCA	TCGA-C8-A12T	PHIP	SNP	Missense_Mutation	6	79688311	C	T	29	94
BRCA	TCGA-C8-A12T	MUC17	SNP	Nonsense_Mutation	7	100679922	C	G	29	57
BRCA	TCGA-C8-A12T	MUC17	SNP	Missense_Mutation	7	100681224	C	G	32	53
BRCA	TCGA-C8-A12T	DNAJC2	SNP	Missense_Mutation	7	102982252	C	G	32	83
BRCA	TCGA-C8-A12T	THAP5	SNP	Missense_Mutation	7	108205254	C	G	32	49
BRCA	TCGA-C8-A12T	LRGUK	SNP	Splice_Site	7	133886232	G	A	33	83
BRCA	TCGA-C8-A12T	ABCB8	SNP	Missense_Mutation	7	150731848	C	A	25	94
BRCA	TCGA-C8-A12T	ABCB5	SNP	Silent	7	20793123	T	C	59	50
BRCA	TCGA-C8-A12T	CARD11	SNP	Missense_Mutation	7	2946355	C	T	19	50
BRCA	TCGA-C8-A12T	MAGI2	SNP	Missense_Mutation	7	77789588	C	T	30	97
BRCA	TCGA-C8-A12T	TSTA3	SNP	Silent	8	144696346	G	A	45	80
BRCA	TCGA-C8-A12T	ZDHHC2	SNP	Missense_Mutation	8	17067946	G	A	45	98
BRCA	TCGA-C8-A12T	XPO7	SNP	Missense_Mutation	8	21861537	G	C	33	97
BRCA	TCGA-C8-A12T	PTK2B	SNP	Missense_Mutation	8	27296585	G	C	45	83
BRCA	TCGA-C8-A12T	PXDNL	SNP	Silent	8	52321106	G	T	46	55
BRCA	TCGA-C8-A12T	ST18	SNP	Missense_Mutation	8	53071507	C	A	24	86
BRCA	TCGA-C8-A12T	CHD7	SNP	Missense_Mutation	8	61693766	G	C	33	62
BRCA	TCGA-C8-A12T	OR13C2	SNP	Missense_Mutation	9	107367609	C	G	32	60
BRCA	TCGA-C8-A12T	AKNA	SNP	Missense_Mutation	9	117099531	T	G	59	22
BRCA	TCGA-C8-A12T	DBH	SNP	Missense_Mutation	9	136516800	C	G	17	55
BRCA	TCGA-C8-A12T	ANKRD18A	SNP	Missense_Mutation	9	38575638	C	T	29	47
BRCA	TCGA-C8-A12U	MAGI3	SNP	Nonsense_Mutation	1	114184725	C	G	29	84
BRCA	TCGA-C8-A12U	ASH1L	DEL	Splice_site	1	155348180	TCT	-	50	91
BRCA	TCGA-C8-A12U	SCYL3	SNP	Missense_Mutation	1	169823868	T	C	50	52
BRCA	TCGA-C8-A12U	MORN1	SNP	Missense_Mutation	1	2268205	G	A	39	71
BRCA	TCGA-C8-A12U	ZBTB40	SNP	Missense_Mutation	1	22839582	C	T	26	98
BRCA	TCGA-C8-A12U	RYR2	SNP	Silent	1	237608817	T	C	61	51
BRCA	TCGA-C8-A12U	MAP3K6	SNP	Nonsense_Mutation	1	27685006	G	A	39	62
BRCA	TCGA-C8-A12U	CHD5	SNP	Silent	1	6209375	G	A	35	51
BRCA	TCGA-C8-A12U	PDE4B	SNP	Missense_Mutation	1	66838015	T	C	52	90
BRCA	TCGA-C8-A12U	NCAM1	SNP	Missense_Mutation	11	113130919	G	A	40	64
BRCA	TCGA-C8-A12U	CCDC73	SNP	Silent	11	32636346	C	T	23	51
BRCA	TCGA-C8-A12U	YIF1A	SNP	Silent	11	66055109	G	T	43	39
BRCA	TCGA-C8-A12U	TRIM64B	SNP	Missense_Mutation	11	89604106	C	A	30	58
BRCA	TCGA-C8-A12U	CCDC82	SNP	Missense_Mutation	11	96117839	C	A	29	83
BRCA	TCGA-C8-A12U	ALDH1L2	SNP	Nonsense_Mutation	12	105443688	G	A	45	100
BRCA	TCGA-C8-A12U	CCNT1	SNP	Missense_Mutation	12	49089558	C	T	27	100
BRCA	TCGA-C8-A12U	SMARCC2	SNP	Missense_Mutation	12	56558356	C	T	18	71
BRCA	TCGA-C8-A12U	VWF	SNP	Splice_site	12	6080875	C	G	22	84
BRCA	TCGA-C8-A12U	RPS6KA5	SNP	Missense_Mutation	14	91341643	C	T	28	77
BRCA	TCGA-C8-A12U	LOC100288367	SNP	Missense_Mutation	15	84949664	A	G	7	53
BRCA	TCGA-C8-A12U	DNAH9	SNP	Missense_Mutation	17	11572453	C	T	23	97
BRCA	TCGA-C8-A12U	LLGL1	SNP	Splice_site	17	18145941	G	C	43	63
BRCA	TCGA-C8-A12U	AKAP1	SNP	Missense_Mutation	17	55183615	G	C	34	54
BRCA	TCGA-C8-A12U	AKAP1	SNP	Missense_Mutation	17	55193475	C	T	19	71
BRCA	TCGA-C8-A12U	TCF4	SNP	Silent	18	52896202	G	A	40	53
BRCA	TCGA-C8-A12U	ZSWIM4	SNP	Missense_Mutation	19	13936517	T	G	55	69
BRCA	TCGA-C8-A12U	ANKRD27	SNP	Silent	19	33134217	G	A	40	43
BRCA	TCGA-C8-A12U	CHST8	SNP	Missense_Mutation	19	34263265	G	A	38	61
BRCA	TCGA-C8-A12U	EHD2	SNP	Missense_Mutation	19	48239666	C	T	22	91
BRCA	TCGA-C8-A12U	RANBP3	SNP	Missense_Mutation	19	5925701	G	C	44	50
BRCA	TCGA-C8-A12U	L3MBTL1	SNP	Splice_site	20	42164575	C	T	23	75
BRCA	TCGA-C8-A12U	OSBPL2	SNP	Missense_Mutation	20	60859166	T	G	62	53
BRCA	TCGA-C8-A12U	BRD1	SNP	Silent	22	50169791	G	A	46	65
BRCA	TCGA-C8-A12U	SH3KBP1	SNP	Silent	23	19854375	G	A	44	68
BRCA	TCGA-C8-A12U	SSX6	SNP	Missense_Mutation	23	47969636	C	T	20	62
BRCA	TCGA-C8-A12U	MSN	SNP	Missense_Mutation	23	64955188	G	A	47	82
BRCA	TCGA-C8-A12U	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-C8-A12U	LIPH	SNP	Splice_site	3	185252919	G	A	40	56
BRCA	TCGA-C8-A12U	DBN1	SNP	Missense_Mutation	5	176899140	T	G	58	55
BRCA	TCGA-C8-A12U	CDH12	SNP	Missense_Mutation	5	21802509	C	G	32	64
BRCA	TCGA-C8-A12U	AKR1B1	SNP	Nonsense_Mutation	7	134136358	C	A	30	95
BRCA	TCGA-C8-A12U	AGAP3	SNP	Missense_Mutation	7	150835325	C	T	27	70
BRCA	TCGA-C8-A12U	RBM33	SNP	Missense_Mutation	7	155532539	C	T	22	49
BRCA	TCGA-C8-A12U	ERV3-1	SNP	Missense_Mutation	7	64453178	C	T	26	52
BRCA	TCGA-C8-A12U	CPSF1	SNP	Missense_Mutation	8	145620395	C	T	29	91
BRCA	TCGA-C8-A12U	CSGALNACT1	SNP	Silent	8	19277864	C	T	29	70
BRCA	TCGA-C8-A12U	EYA1	SNP	Missense_Mutation	8	72234498	C	T	21	100
BRCA	TCGA-C8-A12V	SYT6	SNP	Silent	1	114640409	G	A	44	59
BRCA	TCGA-C8-A12V	ILF2	SNP	Missense_Mutation	1	153635526	C	G	32	89
BRCA	TCGA-C8-A12V	CAMTA1	SNP	Missense_Mutation	1	7792621	G	A	35	62
BRCA	TCGA-C8-A12V	OPN4	SNP	Splice_site	10	88416983	C	T	25	47
BRCA	TCGA-C8-A12V	PKNOX2	SNP	Missense_Mutation	11	125255595	G	A	37	100
BRCA	TCGA-C8-A12V	SAAL1	INS	In_Frame_Ins	11	18127530	-	CCTCCT	6	33
BRCA	TCGA-C8-A12V	LOXL1	SNP	Missense_Mutation	15	74239446	T	C	53	87
BRCA	TCGA-C8-A12V	RPL3L	SNP	Missense_Mutation	16	2002953	G	A	35	82
BRCA	TCGA-C8-A12V	CNTNAP4	SNP	Missense_Mutation	16	76572213	C	A	24	70
BRCA	TCGA-C8-A12V	CRX	SNP	Missense_Mutation	19	48342988	C	A	24	75
BRCA	TCGA-C8-A12V	SSTR4	SNP	Silent	20	23017092	G	T	43	51
BRCA	TCGA-C8-A12V	NOL12	SNP	Missense_Mutation	22	38082463	T	G	56	74
BRCA	TCGA-C8-A12V	MFN1	SNP	Splice_Site	3	179107927	G	T	44	98
BRCA	TCGA-C8-A12V	NPR3	SNP	Missense_Mutation	5	32786414	G	C	39	95
BRCA	TCGA-C8-A12V	NUDT1	SNP	Missense_Mutation	7	2290629	C	T	19	39
BRCA	TCGA-C8-A12V	EXT1	SNP	Missense_Mutation	8	118849379	G	T	34	88
BRCA	TCGA-C8-A12V	ZFHX4	SNP	Missense_Mutation	8	77618671	G	A	37	83
BRCA	TCGA-C8-A12W	GON4L	SNP	Missense_Mutation	1	155823258	A	G	15	69
BRCA	TCGA-C8-A12W	CD84	SNP	Missense_Mutation	1	160519760	A	T	11	42
BRCA	TCGA-C8-A12W	UBR4	SNP	Silent	1	19481474	G	A	37	52
BRCA	TCGA-C8-A12W	HIST3H3	SNP	Missense_Mutation	1	228612911	G	A	39	92
BRCA	TCGA-C8-A12W	PRPF38A	SNP	Missense_Mutation	1	52871475	A	G	12	93
BRCA	TCGA-C8-A12W	WDR78	SNP	Nonsense_Mutation	1	67299695	G	A	40	74
BRCA	TCGA-C8-A12W	LRRC7	SNP	Silent	1	70505050	C	T	19	50
BRCA	TCGA-C8-A12W	AGRN	SNP	Silent	1	985341	G	T	38	54
BRCA	TCGA-C8-A12W	C2CD3	SNP	Silent	11	73814404	C	T	27	52
BRCA	TCGA-C8-A12W	ITGA5	SNP	Missense_Mutation	12	54799461	C	T	19	27
BRCA	TCGA-C8-A12W	PPM1H	SNP	Silent	12	63042362	G	A	48	72
BRCA	TCGA-C8-A12W	CD163L1	SNP	Missense_Mutation	12	7521559	G	T	48	49
BRCA	TCGA-C8-A12W	IFT88	SNP	Missense_Mutation	13	21165111	G	T	33	63
BRCA	TCGA-C8-A12W	SKOR1	SNP	Silent	15	68118406	G	A	40	51
BRCA	TCGA-C8-A12W	SMG1	SNP	Missense_Mutation	16	18830918	G	T	42	100
BRCA	TCGA-C8-A12W	CD19	SNP	Silent	16	28948420	G	A	39	62
BRCA	TCGA-C8-A12W	CCDC135	SNP	Missense_Mutation	16	57752290	G	A	33	55
BRCA	TCGA-C8-A12W	NOS2	SNP	Missense_Mutation	17	26087691	G	T	39	54
BRCA	TCGA-C8-A12W	CDK12	SNP	Missense_Mutation	17	37682239	C	T	22	83
BRCA	TCGA-C8-A12W	TP53	SNP	Missense_Mutation	17	7578272	G	A	46	97
BRCA	TCGA-C8-A12W	IRF3	SNP	Missense_Mutation	19	50163080	G	A	40	57
BRCA	TCGA-C8-A12W	TTN	SNP	Missense_Mutation	2	179477701	T	C	50	72
BRCA	TCGA-C8-A12W	TTN	SNP	Silent	2	179611635	G	A	39	25
BRCA	TCGA-C8-A12W	TRIB3	SNP	Silent	20	377082	C	T	27	7
BRCA	TCGA-C8-A12W	BRWD1	SNP	Missense_Mutation	21	40570878	A	C	11	77
BRCA	TCGA-C8-A12W	KIAA1210	SNP	Missense_Mutation	23	118223625	C	T	23	33
BRCA	TCGA-C8-A12W	GAB3	SNP	Silent	23	153924213	G	A	40	52
BRCA	TCGA-C8-A12W	NLGN3	SNP	Missense_Mutation	23	70375070	G	A	39	95
BRCA	TCGA-C8-A12W	COL6A6	SNP	Missense_Mutation	3	130313159	G	A	40	37
BRCA	TCGA-C8-A12W	CPA3	SNP	Silent	3	148601470	G	A	37	48
BRCA	TCGA-C8-A12W	SMC4	SNP	Missense_Mutation	3	160146661	T	G	49	94
BRCA	TCGA-C8-A12W	WDR49	SNP	Missense_Mutation	3	167223187	T	C	50	61
BRCA	TCGA-C8-A12W	SKIL	SNP	Silent	3	170078980	G	T	40	17
BRCA	TCGA-C8-A12W	KLHDC8B	SNP	Missense_Mutation	3	49212375	G	C	48	81
BRCA	TCGA-C8-A12W	ITIH3	SNP	Missense_Mutation	3	52833413	T	A	62	69
BRCA	TCGA-C8-A12W	CACNA2D3	SNP	Missense_Mutation	3	55107854	C	T	27	65
BRCA	TCGA-C8-A12W	CNTN3	SNP	Splice_Site	3	74418526	T	C	53	88
BRCA	TCGA-C8-A12W	ROBO1	SNP	Missense_Mutation	3	78666899	C	G	17	99
BRCA	TCGA-C8-A12W	CXCL6	SNP	Missense_Mutation	4	74702958	C	T	23	75
BRCA	TCGA-C8-A12W	ATOH1	SNP	Missense_Mutation	4	94751069	C	T	31	92
BRCA	TCGA-C8-A12W	PCDHB7	SNP	Missense_Mutation	5	140553707	C	A	28	83
BRCA	TCGA-C8-A12W	F2RL1	SNP	Silent	5	76128711	C	T	19	49
BRCA	TCGA-C8-A12W	CCDC136	SNP	Missense_Mutation	7	128452972	G	A	37	65
BRCA	TCGA-C8-A12W	ZER1	SNP	Missense_Mutation	9	131513756	G	A	39	91
BRCA	TCGA-C8-A12W	PTCH1	SNP	Missense_Mutation	9	98209699	G	A	37	49
BRCA	TCGA-C8-A12X	FBXO6	SNP	Silent	1	11732060	G	A	39	3
BRCA	TCGA-C8-A12X	ESRRG	SNP	Missense_Mutation	1	216850754	G	T	43	100
BRCA	TCGA-C8-A12X	MARK1	SNP	Missense_Mutation	1	220835233	A	G	11	93
BRCA	TCGA-C8-A12X	HDAC1	SNP	Splice_site	1	32798618	G	A	43	68
BRCA	TCGA-C8-A12X	CSMD2	SNP	Missense_Mutation	1	34254255	G	A	35	76
BRCA	TCGA-C8-A12X	TMEM53	SNP	Missense_Mutation	1	45120323	C	T	19	51
BRCA	TCGA-C8-A12X	CACHD1	SNP	Missense_Mutation	1	65124496	C	T	23	78
BRCA	TCGA-C8-A12X	MUC6	SNP	Nonsense_Mutation	11	1018368	G	T	45	53
BRCA	TCGA-C8-A12X	ZNF202	SNP	Missense_Mutation	11	123596728	T	A	58	65
BRCA	TCGA-C8-A12X	ROBO4	SNP	Missense_Mutation	11	124757090	C	G	26	50
BRCA	TCGA-C8-A12X	SAA1	SNP	Missense_Mutation	11	18288513	G	A	37	54
BRCA	TCGA-C8-A12X	MADD	SNP	Missense_Mutation	11	47306022	A	T	10	58
BRCA	TCGA-C8-A12X	RPH3A	SNP	Missense_Mutation	12	113306329	C	A	24	73
BRCA	TCGA-C8-A12X	OASL	SNP	Missense_Mutation	12	121461839	C	T	17	78
BRCA	TCGA-C8-A12X	DNAH10	SNP	Missense_Mutation	12	124349182	G	A	41	100
BRCA	TCGA-C8-A12X	KRT81	SNP	Silent	12	52681497	C	T	32	67
BRCA	TCGA-C8-A12X	PSMC6	SNP	Nonsense_Mutation	14	53184856	T	G	61	88
BRCA	TCGA-C8-A12X	WDR72	SNP	Missense_Mutation	15	53908085	T	G	56	71
BRCA	TCGA-C8-A12X	WDR72	SNP	Missense_Mutation	15	54015098	G	A	38	72
BRCA	TCGA-C8-A12X	TBC1D21	SNP	Nonsense_Mutation	15	74177364	G	T	45	64
BRCA	TCGA-C8-A12X	GSPT1	SNP	Missense_Mutation	16	11976892	G	A	34	93
BRCA	TCGA-C8-A12X	KIAA0182	SNP	Missense_Mutation	16	85688513	C	T	22	68
BRCA	TCGA-C8-A12X	STH	SNP	Missense_Mutation	17	44076959	G	T	48	40
BRCA	TCGA-C8-A12X	LPPR2	SNP	Splice_Site	19	11474496	G	C	36	74
BRCA	TCGA-C8-A12X	IKZF2	SNP	Missense_Mutation	2	213872500	G	T	44	71
BRCA	TCGA-C8-A12X	DPYSL5	SNP	Missense_Mutation	2	27154529	C	T	31	65
BRCA	TCGA-C8-A12X	CLIP4	SNP	Nonsense_Mutation	2	29386783	A	T	3	87
BRCA	TCGA-C8-A12X	PLXNA3	SNP	Silent	23	153695619	C	T	23	33
BRCA	TCGA-C8-A12X	MAGEB4	SNP	Silent	23	30260918	A	G	4	44
BRCA	TCGA-C8-A12X	CCNB3	SNP	Silent	23	50090648	A	G	6	45
BRCA	TCGA-C8-A12X	XRN1	SNP	Missense_Mutation	3	142123820	A	T	16	46
BRCA	TCGA-C8-A12X	MEPE	SNP	Silent	4	88766794	C	T	19	48
BRCA	TCGA-C8-A12X	GPRIN3	DEL	Frame_Shift_Del	4	90170752	TGGTTTCTCAGGTTGC	-	63	48
BRCA	TCGA-C8-A12X	ATP10B	SNP	Missense_Mutation	5	160059168	A	G	11	49
BRCA	TCGA-C8-A12X	C5orf25	SNP	Missense_Mutation	5	175717093	G	A	34	65
BRCA	TCGA-C8-A12X	ISL1	SNP	Missense_Mutation	5	50687262	C	T	28	100
BRCA	TCGA-C8-A12X	IL6ST	SNP	Missense_Mutation	5	55251984	T	C	52	48
BRCA	TCGA-C8-A12X	CAP2	SNP	Missense_Mutation	6	17421790	G	T	42	60
BRCA	TCGA-C8-A12X	ZNF786	SNP	Silent	7	148769113	G	T	39	56
BRCA	TCGA-C8-A12X	ABCB5	SNP	Missense_Mutation	7	20721141	G	A	39	89
BRCA	TCGA-C8-A12X	VPS41	SNP	Missense_Mutation	7	38768370	T	C	63	89
BRCA	TCGA-C8-A12X	ABCA13	SNP	Missense_Mutation	7	48314760	C	T	31	58
BRCA	TCGA-C8-A12X	HEPACAM2	SNP	Nonsense_Mutation	7	92826860	G	C	45	82
BRCA	TCGA-C8-A12X	PREX2	SNP	Missense_Mutation	8	69031699	C	G	29	95
BRCA	TCGA-C8-A12X	PTBP3	SNP	Silent	9	115038244	C	T	27	34
BRCA	TCGA-C8-A12X	VLDLR	SNP	Missense_Mutation	9	2643294	G	A	38	51
BRCA	TCGA-C8-A12Y	C1orf194	SNP	Missense_Mutation	1	109649198	T	C	60	59
BRCA	TCGA-C8-A12Y	LAMC1	SNP	Missense_Mutation	1	183086559	C	T	31	54
BRCA	TCGA-C8-A12Y	SLC30A10	SNP	Missense_Mutation	1	220089061	T	A	57	48
BRCA	TCGA-C8-A12Y	ZSWIM5	SNP	Silent	1	45501826	G	A	40	42
BRCA	TCGA-C8-A12Y	CC2D1B	SNP	Missense_Mutation	1	52820569	C	T	23	98
BRCA	TCGA-C8-A12Y	FRMPD2	SNP	Silent	10	49431219	G	T	35	69
BRCA	TCGA-C8-A12Y	NDUFS3	SNP	Missense_Mutation	11	47605938	G	T	45	99
BRCA	TCGA-C8-A12Y	A2ML1	SNP	Silent	12	8975820	C	A	23	45
BRCA	TCGA-C8-A12Y	FLT1	SNP	Silent	13	29005430	G	A	39	44
BRCA	TCGA-C8-A12Y	RYR3	SNP	Missense_Mutation	15	33873763	G	A	40	71
BRCA	TCGA-C8-A12Y	USP14	SNP	Silent	18	210024	T	C	63	74
BRCA	TCGA-C8-A12Y	DSC3	SNP	Nonsense_Mutation	18	28574329	G	A	37	49
BRCA	TCGA-C8-A12Y	NOTCH3	SNP	Silent	19	15281153	C	T	27	38
BRCA	TCGA-C8-A12Y	SUPT5H	SNP	Missense_Mutation	19	39949691	G	A	38	98
BRCA	TCGA-C8-A12Y	ZFP28	SNP	Missense_Mutation	19	57061548	C	T	25	41
BRCA	TCGA-C8-A12Y	RAB3GAP1	SNP	Splice_Site	2	135848702	T	C	57	78
BRCA	TCGA-C8-A12Y	YTHDF1	SNP	Silent	20	61835025	G	A	40	41
BRCA	TCGA-C8-A12Y	SH3KBP1	SNP	Missense_Mutation	23	19568118	G	A	38	57
BRCA	TCGA-C8-A12Y	MSL2	SNP	Missense_Mutation	3	135870774	T	C	49	54
BRCA	TCGA-C8-A12Y	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-C8-A12Y	C6	SNP	Missense_Mutation	5	41149444	C	T	27	50
BRCA	TCGA-C8-A12Y	EDN1	SNP	Silent	6	12294560	G	T	41	44
BRCA	TCGA-C8-A12Y	TFAP2B	SNP	Missense_Mutation	6	50811097	A	G	7	67
BRCA	TCGA-C8-A12Y	TEX15	SNP	Missense_Mutation	8	30705650	C	T	28	49
BRCA	TCGA-C8-A12Y	KIAA0146	SNP	Missense_Mutation	8	48508402	G	A	46	51
BRCA	TCGA-C8-A12Y	PLEKHF2	DEL	Frame_Shift_Del	8	96166752	TTGTCAGAAAGCAAAA	-	60	56
BRCA	TCGA-C8-A12Y	COL5A1	SNP	Splice_site	9	137630360	C	T	27	80
BRCA	TCGA-C8-A12Y	VLDLR	SNP	Missense_Mutation	9	2643403	G	A	40	79
BRCA	TCGA-C8-A12Y	SLC35D2	INS	Splice_Site	9	99126743	-	A	61	72
BRCA	TCGA-C8-A12Z	FLG	SNP	Missense_Mutation	1	152286754	C	G	32	51
BRCA	TCGA-C8-A12Z	ATP8B2	SNP	Missense_Mutation	1	154313476	C	T	19	98
BRCA	TCGA-C8-A12Z	ANGPTL1	SNP	Silent	1	178834294	T	G	58	52
BRCA	TCGA-C8-A12Z	ANGPTL1	SNP	Missense_Mutation	1	178834752	G	C	35	49
BRCA	TCGA-C8-A12Z	ABCD3	SNP	Missense_Mutation	1	94946144	C	T	32	99
BRCA	TCGA-C8-A12Z	WDFY4	SNP	Silent	10	49943941	C	T	19	38
BRCA	TCGA-C8-A12Z	C10orf12	SNP	Missense_Mutation	10	98742267	G	A	33	55
BRCA	TCGA-C8-A12Z	NUP98	SNP	Missense_Mutation	11	3700873	G	A	38	83
BRCA	TCGA-C8-A12Z	DAGLA	SNP	Silent	11	61508016	C	G	21	68
BRCA	TCGA-C8-A12Z	STAT2	SNP	Missense_Mutation	12	56748596	T	C	55	75
BRCA	TCGA-C8-A12Z	MYCBP2	SNP	Missense_Mutation	13	77817214	T	C	59	74
BRCA	TCGA-C8-A12Z	DHRS4	SNP	Missense_Mutation	14	24424404	G	A	41	59
BRCA	TCGA-C8-A12Z	RYR3	SNP	Silent	15	33954810	G	A	37	40
BRCA	TCGA-C8-A12Z	PLA2G4F	SNP	Missense_Mutation	15	42436738	G	A	39	78
BRCA	TCGA-C8-A12Z	MPV17L	SNP	Missense_Mutation	16	15501892	G	C	45	84
BRCA	TCGA-C8-A12Z	PAPD5	SNP	Missense_Mutation	16	50259141	C	G	32	95
BRCA	TCGA-C8-A12Z	JUP	SNP	Missense_Mutation	17	39777865	C	T	31	81
BRCA	TCGA-C8-A12Z	GH2	SNP	Silent	17	61958446	G	C	33	71
BRCA	TCGA-C8-A12Z	ACAP1	SNP	Silent	17	7251307	G	A	45	52
BRCA	TCGA-C8-A12Z	TP53	SNP	Missense_Mutation	17	7574002	C	G	31	52
BRCA	TCGA-C8-A12Z	TRIP10	INS	Frame_Shift_Ins	19	6751165	-	A	41	58
BRCA	TCGA-C8-A12Z	PUM2	SNP	Missense_Mutation	2	20511409	C	T	29	100
BRCA	TCGA-C8-A12Z	ATG16L1	SNP	Missense_Mutation	2	234164823	C	T	21	68
BRCA	TCGA-C8-A12Z	AGAP1	SNP	Missense_Mutation	2	236715952	G	A	39	99
BRCA	TCGA-C8-A12Z	IMMT	SNP	Missense_Mutation	2	86397875	C	G	29	51
BRCA	TCGA-C8-A12Z	MX1	SNP	Missense_Mutation	21	42807920	G	C	41	96
BRCA	TCGA-C8-A12Z	MKL1	SNP	Nonsense_Mutation	22	40807871	C	A	30	49
BRCA	TCGA-C8-A12Z	ARSA	SNP	Missense_Mutation	22	51064659	C	T	23	62
BRCA	TCGA-C8-A12Z	RBMXL3	SNP	Missense_Mutation	23	114425988	T	C	55	33
BRCA	TCGA-C8-A12Z	GDI1	SNP	Missense_Mutation	23	153668757	G	A	38	94
BRCA	TCGA-C8-A12Z	ZMYM3	SNP	Missense_Mutation	23	70472831	G	A	43	65
BRCA	TCGA-C8-A12Z	ACAD11	SNP	Missense_Mutation	3	132277859	T	C	52	52
BRCA	TCGA-C8-A12Z	ITGA9	SNP	Missense_Mutation	3	37778398	G	A	45	66
BRCA	TCGA-C8-A12Z	BANK1	SNP	Missense_Mutation	4	102951292	G	A	45	42
BRCA	TCGA-C8-A12Z	CLCN3	SNP	Missense_Mutation	4	170628037	C	T	20	100
BRCA	TCGA-C8-A12Z	FRYL	SNP	Missense_Mutation	4	48584566	A	C	16	90
BRCA	TCGA-C8-A12Z	PCDHB10	SNP	Missense_Mutation	5	140572714	G	A	41	60
BRCA	TCGA-C8-A12Z	C5orf42	SNP	Missense_Mutation	5	37169245	C	G	32	48
BRCA	TCGA-C8-A12Z	PIK3R1	DEL	In_Frame_Del	5	67591127	AGA	-	11	77
BRCA	TCGA-C8-A12Z	CD83	SNP	Missense_Mutation	6	14131848	C	T	26	52
BRCA	TCGA-C8-A12Z	HIST1H2AK	SNP	Missense_Mutation	6	27805754	C	T	29	92
BRCA	TCGA-C8-A12Z	FUT9	SNP	Silent	6	96651553	C	T	25	72
BRCA	TCGA-C8-A12Z	METTL2B	SNP	Silent	7	128141820	A	G	2	46
BRCA	TCGA-C8-A12Z	EPHA1	SNP	Missense_Mutation	7	143104718	G	A	41	69
BRCA	TCGA-C8-A12Z	ENSG00000214754	SNP	Missense_Mutation	7	47093148	G	T	39	54
BRCA	TCGA-C8-A12Z	RGS22	SNP	Nonsense_Mutation	8	100994227	G	A	46	92
BRCA	TCGA-C8-A12Z	PRRC2B	SNP	Missense_Mutation	9	134319670	G	A	40	95
BRCA	TCGA-C8-A130	DUSP27	SNP	Silent	1	167095568	C	T	19	49
BRCA	TCGA-C8-A130	DNAH14	SNP	Splice_Site	1	225568025	G	A	44	79
BRCA	TCGA-C8-A130	PTCHD3	SNP	Silent	10	27702625	C	T	25	54
BRCA	TCGA-C8-A130	XRRA1	SNP	Missense_Mutation	11	74570222	A	C	3	75
BRCA	TCGA-C8-A130	NOX4	SNP	Missense_Mutation	11	89106652	A	G	7	52
BRCA	TCGA-C8-A130	CCDC91	SNP	Missense_Mutation	12	28459679	A	C	7	72
BRCA	TCGA-C8-A130	METAP2	SNP	Nonsense_Mutation	12	95905673	A	T	9	93
BRCA	TCGA-C8-A130	DCUN1D2	SNP	Missense_Mutation	13	114128499	A	G	2	87
BRCA	TCGA-C8-A130	TBC1D4	SNP	Missense_Mutation	13	75936260	C	T	31	81
BRCA	TCGA-C8-A130	OR4K2	SNP	Silent	14	20345239	G	T	48	53
BRCA	TCGA-C8-A130	NRXN3	SNP	Missense_Mutation	14	79933659	G	A	40	89
BRCA	TCGA-C8-A130	SPRED1	SNP	Missense_Mutation	15	38591723	G	A	40	57
BRCA	TCGA-C8-A130	ISLR	SNP	Missense_Mutation	15	74468053	T	C	59	65
BRCA	TCGA-C8-A130	TMC5	SNP	Silent	16	19481012	G	A	36	51
BRCA	TCGA-C8-A130	TP53	DEL	Frame_Shift_Del	17	7578538	T	-	60	89
BRCA	TCGA-C8-A130	ELP2	SNP	Missense_Mutation	18	33721133	G	C	33	48
BRCA	TCGA-C8-A130	KRI1	SNP	Silent	19	10671742	G	A	39	26
BRCA	TCGA-C8-A130	ACP5	SNP	Missense_Mutation	19	11685975	G	A	40	36
BRCA	TCGA-C8-A130	HAUS5	SNP	Missense_Mutation	19	36110392	C	T	23	56
BRCA	TCGA-C8-A130	WDR33	SNP	Missense_Mutation	2	128463985	C	T	23	89
BRCA	TCGA-C8-A130	TRAK2	SNP	Silent	2	202245617	G	C	33	63
BRCA	TCGA-C8-A130	SPHKAP	SNP	Missense_Mutation	2	228883499	C	A	31	50
BRCA	TCGA-C8-A130	ENSG00000205011	SNP	Missense_Mutation	2	48757097	C	T	31	52
BRCA	TCGA-C8-A130	CRKL	SNP	Missense_Mutation	22	21272296	A	G	7	88
BRCA	TCGA-C8-A130	MYO18B	SNP	Missense_Mutation	22	26422713	G	A	39	83
BRCA	TCGA-C8-A130	BPIFC	SNP	Missense_Mutation	22	32815386	C	T	27	63
BRCA	TCGA-C8-A130	LUZP4	SNP	Silent	23	114524334	G	A	40	61
BRCA	TCGA-C8-A130	BRCC3	SNP	Missense_Mutation	23	154317544	G	A	38	80
BRCA	TCGA-C8-A130	CFP	SNP	Silent	23	47489181	G	C	43	52
BRCA	TCGA-C8-A130	KIF4A	SNP	Silent	23	69510350	G	T	46	63
BRCA	TCGA-C8-A130	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-C8-A130	MAGI1	SNP	Missense_Mutation	3	65342480	C	T	23	48
BRCA	TCGA-C8-A130	KIAA0922	SNP	Missense_Mutation	4	154547305	G	T	36	45
BRCA	TCGA-C8-A130	DBN1	SNP	Splice_Site	5	176885058	C	G	18	68
BRCA	TCGA-C8-A130	HACE1	SNP	Silent	6	105244542	G	C	41	41
BRCA	TCGA-C8-A130	HIST1H3C	SNP	Missense_Mutation	6	26045726	G	C	38	97
BRCA	TCGA-C8-A130	ZKSCAN4	SNP	Silent	6	28214862	C	T	29	57
BRCA	TCGA-C8-A130	KIFC2	SNP	Missense_Mutation	8	145692700	C	T	31	48
BRCA	TCGA-C8-A130	MFHAS1	SNP	Missense_Mutation	8	8748257	G	A	38	56
BRCA	TCGA-C8-A130	PSIP1	SNP	Missense_Mutation	9	15469016	G	A	45	98
BRCA	TCGA-C8-A131	SYPL2	SNP	Silent	1	110018244	C	T	27	49
BRCA	TCGA-C8-A131	F5	SNP	Splice_site	1	169541460	T	G	56	76
BRCA	TCGA-C8-A131	QSOX1	SNP	Silent	1	180151338	C	T	27	54
BRCA	TCGA-C8-A131	PGBD5	SNP	Missense_Mutation	1	230503869	G	T	33	53
BRCA	TCGA-C8-A131	ACTN2	DEL	Frame_Shift_Del	1	236902735	A	-	11	92
BRCA	TCGA-C8-A131	CEP170	SNP	Missense_Mutation	1	243329334	C	T	31	94
BRCA	TCGA-C8-A131	SSX2IP	SNP	Missense_Mutation	1	85135415	C	A	29	59
BRCA	TCGA-C8-A131	PDCD11	SNP	Silent	10	105179384	C	T	29	56
BRCA	TCGA-C8-A131	MYO3A	SNP	Silent	10	26243835	C	T	17	68
BRCA	TCGA-C8-A131	PCSK7	SNP	Missense_Mutation	11	117089867	C	A	19	50
BRCA	TCGA-C8-A131	KDM4E	SNP	Missense_Mutation	11	94759830	G	T	42	60
BRCA	TCGA-C8-A131	TAS2R31	SNP	Missense_Mutation	12	11183883	C	G	17	44
BRCA	TCGA-C8-A131	TBX3	DEL	Frame_Shift_Del	12	115118711	G	-	47	60
BRCA	TCGA-C8-A131	KRAS	SNP	Missense_Mutation	12	25398284	C	A	18	99
BRCA	TCGA-C8-A131	NR4A1	SNP	Missense_Mutation	12	52451283	C	T	31	51
BRCA	TCGA-C8-A131	NOP2	SNP	Missense_Mutation	12	6670928	C	T	30	100
BRCA	TCGA-C8-A131	AMDHD1	SNP	Missense_Mutation	12	96360231	C	A	17	100
BRCA	TCGA-C8-A131	RCBTB1	SNP	Missense_Mutation	13	50134175	C	A	22	99
BRCA	TCGA-C8-A131	DOCK9	SNP	Missense_Mutation	13	99575591	C	T	17	68
BRCA	TCGA-C8-A131	TEP1	SNP	Nonsense_Mutation	14	20873630	C	A	30	86
BRCA	TCGA-C8-A131	MYH7	DEL	Frame_Shift_Del	14	23894523	G	-	47	53
BRCA	TCGA-C8-A131	AKAP6	SNP	Missense_Mutation	14	33291628	G	A	41	87
BRCA	TCGA-C8-A131	ARNT2	SNP	Silent	15	80750279	C	T	31	41
BRCA	TCGA-C8-A131	NTHL1	SNP	Missense_Mutation	16	2090176	G	A	41	51
BRCA	TCGA-C8-A131	AARS	SNP	Silent	16	70295012	G	A	34	85
BRCA	TCGA-C8-A131	SUPT6H	SNP	Missense_Mutation	17	27001584	G	A	45	98
BRCA	TCGA-C8-A131	CACNA1G	SNP	Silent	17	48646591	C	G	25	47
BRCA	TCGA-C8-A131	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-C8-A131	BAHCC1	SNP	Missense_Mutation	17	79429821	G	A	42	92
BRCA	TCGA-C8-A131	RYR1	SNP	Missense_Mutation	19	38951038	G	A	38	94
BRCA	TCGA-C8-A131	ZNF211	SNP	Silent	19	58153270	G	A	33	49
BRCA	TCGA-C8-A131	PNPLA6	SNP	Missense_Mutation	19	7601348	C	T	18	92
BRCA	TCGA-C8-A131	ZNF812	SNP	Missense_Mutation	19	9800857	C	T	22	56
BRCA	TCGA-C8-A131	KLHL23	SNP	Missense_Mutation	2	170592266	A	C	6	78
BRCA	TCGA-C8-A131	DPYSL5	SNP	Silent	2	27169788	C	T	31	50
BRCA	TCGA-C8-A131	HAAO	SNP	Silent	2	42997323	G	A	33	58
BRCA	TCGA-C8-A131	WDR54	SNP	Missense_Mutation	2	74651009	T	C	64	77
BRCA	TCGA-C8-A131	KIAA1211L	SNP	Silent	2	99443462	C	T	31	39
BRCA	TCGA-C8-A131	DOCK11	SNP	Missense_Mutation	23	117699984	G	A	40	98
BRCA	TCGA-C8-A131	HAUS7	SNP	Silent	23	152722094	G	A	37	20
BRCA	TCGA-C8-A131	PARP15	SNP	Missense_Mutation	3	122345796	C	A	28	46
BRCA	TCGA-C8-A131	ZIC4	SNP	Missense_Mutation	3	147113686	A	G	10	91
BRCA	TCGA-C8-A131	PIK3CA	SNP	Missense_Mutation	3	178916936	G	A	40	97
BRCA	TCGA-C8-A131	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-C8-A131	FAM131A	SNP	Missense_Mutation	3	184055444	A	G	1	57
BRCA	TCGA-C8-A131	CENPE	SNP	Missense_Mutation	4	104115811	C	T	32	99
BRCA	TCGA-C8-A131	ADAMTS19	SNP	Missense_Mutation	5	129040021	G	T	43	60
BRCA	TCGA-C8-A131	PCDHB12	SNP	Missense_Mutation	5	140589610	C	G	17	41
BRCA	TCGA-C8-A131	GRPEL2	DEL	Frame_Shift_Del	5	148730599	C	-	30	53
BRCA	TCGA-C8-A131	IRX4	INS	In_Frame_Ins	5	1878883	-	TTT	30	90
BRCA	TCGA-C8-A131	OSMR	SNP	Missense_Mutation	5	38904586	C	A	20	40
BRCA	TCGA-C8-A131	UNC5CL	SNP	Missense_Mutation	6	41000851	G	A	38	59
BRCA	TCGA-C8-A131	DCAF4L2	SNP	Missense_Mutation	8	88885659	G	T	47	56
BRCA	TCGA-C8-A131	STXBP1	SNP	Missense_Mutation	9	130430385	C	T	25	67
BRCA	TCGA-C8-A131	ADAMTSL2	SNP	Missense_Mutation	9	136412259	G	A	39	99
BRCA	TCGA-C8-A131	GPSM1	SNP	Silent	9	139231983	T	C	60	82
BRCA	TCGA-C8-A131	CHCHD9	SNP	Silent	9	82006647	G	A	36	53
BRCA	TCGA-C8-A131	PTPRD	SNP	Missense_Mutation	9	8317921	G	A	37	87
BRCA	TCGA-C8-A132	FAM212B	SNP	Missense_Mutation	1	112270003	C	T	19	71
BRCA	TCGA-C8-A132	ZNF687	SNP	Missense_Mutation	1	151261136	C	A	21	97
BRCA	TCGA-C8-A132	FLG2	SNP	Silent	1	152324739	G	A	40	40
BRCA	TCGA-C8-A132	TBX19	SNP	Splice_Site	1	168262381	G	C	33	98
BRCA	TCGA-C8-A132	CR1	SNP	Missense_Mutation	1	207697209	A	G	16	34
BRCA	TCGA-C8-A132	C1orf173	SNP	Missense_Mutation	1	75038620	G	A	46	47
BRCA	TCGA-C8-A132	HPS1	SNP	Missense_Mutation	10	100195456	T	G	56	75
BRCA	TCGA-C8-A132	SORBS1	SNP	Missense_Mutation	10	97157022	C	T	32	87
BRCA	TCGA-C8-A132	DNTT	SNP	Missense_Mutation	10	98078170	C	G	29	54
BRCA	TCGA-C8-A132	LRRK2	SNP	Nonsense_Mutation	12	40687422	T	A	61	64
BRCA	TCGA-C8-A132	ATP11A	SNP	Missense_Mutation	13	113485824	A	G	4	89
BRCA	TCGA-C8-A132	GAS6	SNP	Missense_Mutation	13	114535690	C	G	32	53
BRCA	TCGA-C8-A132	MYH6	SNP	Missense_Mutation	14	23863422	G	A	40	98
BRCA	TCGA-C8-A132	SKOR1	SNP	Missense_Mutation	15	68122564	G	A	45	72
BRCA	TCGA-C8-A132	ZNF710	SNP	Missense_Mutation	15	90611078	C	T	22	61
BRCA	TCGA-C8-A132	EARS2	SNP	Missense_Mutation	16	23546520	T	C	58	88
BRCA	TCGA-C8-A132	MYH4	SNP	Missense_Mutation	17	10358324	G	A	40	100
BRCA	TCGA-C8-A132	PRPF8	SNP	Missense_Mutation	17	1557290	G	A	48	100
BRCA	TCGA-C8-A132	KRT32	SNP	Silent	17	39623317	G	A	48	52
BRCA	TCGA-C8-A132	COL1A1	SNP	Missense_Mutation	17	48263242	C	T	26	93
BRCA	TCGA-C8-A132	COL1A1	SNP	Missense_Mutation	17	48264447	C	G	21	92
BRCA	TCGA-C8-A132	COL1A1	SNP	Silent	17	48266586	C	T	21	56
BRCA	TCGA-C8-A132	COL1A1	SNP	Missense_Mutation	17	48267243	C	T	25	69
BRCA	TCGA-C8-A132	BPTF	SNP	Missense_Mutation	17	65914927	C	A	30	83
BRCA	TCGA-C8-A132	QRICH2	SNP	Missense_Mutation	17	74277976	C	T	31	65
BRCA	TCGA-C8-A132	ZNF407	SNP	Missense_Mutation	18	72347051	C	G	30	54
BRCA	TCGA-C8-A132	PRX	SNP	Missense_Mutation	19	40902578	C	G	32	59
BRCA	TCGA-C8-A132	ERCC1	SNP	Nonsense_Mutation	19	45924518	G	C	45	55
BRCA	TCGA-C8-A132	C20orf26	SNP	Missense_Mutation	20	20269280	G	T	48	78
BRCA	TCGA-C8-A132	SNX21	SNP	Silent	20	44463689	A	C	6	47
BRCA	TCGA-C8-A132	DIDO1	SNP	Splice_Site	20	61523338	C	G	18	97
BRCA	TCGA-C8-A132	BACE2	SNP	Silent	21	42617984	A	G	8	45
BRCA	TCGA-C8-A132	YDJC	SNP	Missense_Mutation	22	21982871	G	A	38	55
BRCA	TCGA-C8-A132	PIWIL3	SNP	Missense_Mutation	22	25119160	C	T	30	48
BRCA	TCGA-C8-A132	PLXNB2	DEL	In_Frame_Del	22	50719581	TCT	-	50	63
BRCA	TCGA-C8-A132	BCORL1	SNP	Missense_Mutation	23	129149801	C	T	22	53
BRCA	TCGA-C8-A132	KIAA2022	SNP	Missense_Mutation	23	73960461	G	A	40	63
BRCA	TCGA-C8-A132	COL8A1	SNP	Silent	3	99513747	G	A	43	50
BRCA	TCGA-C8-A132	MTTP	SNP	Silent	4	100530060	G	T	43	51
BRCA	TCGA-C8-A132	TIFA	SNP	Missense_Mutation	4	113199046	G	C	39	87
BRCA	TCGA-C8-A132	ARSJ	SNP	Silent	4	114823652	G	A	45	75
BRCA	TCGA-C8-A132	CPEB2	SNP	Missense_Mutation	4	15060048	A	G	16	92
BRCA	TCGA-C8-A132	HTT	SNP	Missense_Mutation	4	3190715	A	G	8	79
BRCA	TCGA-C8-A132	MCC	SNP	Missense_Mutation	5	112420867	G	C	37	42
BRCA	TCGA-C8-A132	PCDHB5	SNP	Missense_Mutation	5	140517348	G	C	38	33
BRCA	TCGA-C8-A132	RGMB	DEL	Frame_Shift_Del	5	98129189	AC	-	14	69
BRCA	TCGA-C8-A132	ENPP3	SNP	Missense_Mutation	6	132014640	C	G	23	62
BRCA	TCGA-C8-A132	PPP1R3A	DEL	Frame_Shift_Del	7	113518116	T	-	52	48
BRCA	TCGA-C8-A132	GARS	SNP	Silent	7	30649281	A	G	16	37
BRCA	TCGA-C8-A132	WIPI2	SNP	Missense_Mutation	7	5262288	G	A	39	98
BRCA	TCGA-C8-A132	SLC39A14	SNP	Missense_Mutation	8	22277089	C	G	29	73
BRCA	TCGA-C8-A132	CDH17	SNP	Silent	8	95172379	C	G	29	52
BRCA	TCGA-C8-A132	IKBKAP	SNP	Missense_Mutation	9	111659236	G	C	45	63
BRCA	TCGA-C8-A132	IARS	SNP	Splice_site	9	95003139	T	A	56	64
BRCA	TCGA-C8-A133	LOC653513	INS	Splice_Site	1	144679890	-	A	61	55
BRCA	TCGA-C8-A133	GATA3	DEL	Frame_Shift_Del	10	8115810	CCCAAGAACAGCTCGTTTAA	-	22	72
BRCA	TCGA-C8-A133	TEAD4	SNP	Missense_Mutation	12	3104024	T	G	55	71
BRCA	TCGA-C8-A133	CNTN1	SNP	Splice_site	12	41316230	T	A	51	89
BRCA	TCGA-C8-A133	CKAP2	SNP	Missense_Mutation	13	53048072	T	G	56	50
BRCA	TCGA-C8-A133	SULT1A2	SNP	Missense_Mutation	16	28603690	C	T	21	47
BRCA	TCGA-C8-A133	CORO1A	SNP	Missense_Mutation	16	30198938	G	A	40	32
BRCA	TCGA-C8-A133	PSMB6	SNP	Missense_Mutation	17	4700075	C	T	30	90
BRCA	TCGA-C8-A133	PDE4C	SNP	Silent	19	18333013	C	G	17	51
BRCA	TCGA-C8-A133	ENSG00000229113	SNP	Missense_Mutation	19	42027776	C	T	28	70
BRCA	TCGA-C8-A133	DMWD	SNP	Missense_Mutation	19	46294321	C	T	29	92
BRCA	TCGA-C8-A133	TRPC4AP	SNP	Silent	20	33591392	G	A	35	61
BRCA	TCGA-C8-A133	ASCC2	SNP	Silent	22	30189408	G	A	40	50
BRCA	TCGA-C8-A133	ALG13	SNP	Missense_Mutation	23	110987998	C	A	24	49
BRCA	TCGA-C8-A133	AFF2	SNP	Missense_Mutation	23	148037578	G	T	33	69
BRCA	TCGA-C8-A133	MBD4	SNP	Missense_Mutation	3	129152964	C	T	31	61
BRCA	TCGA-C8-A133	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-C8-A133	FBXL5	SNP	Missense_Mutation	4	15627295	G	T	35	95
BRCA	TCGA-C8-A133	MYB	SNP	Missense_Mutation	6	135511361	C	T	25	100
BRCA	TCGA-C8-A133	RMND1	SNP	Nonsense_Mutation	6	151743699	C	A	29	81
BRCA	TCGA-C8-A133	RREB1	SNP	Silent	6	7189439	A	G	9	57
BRCA	TCGA-C8-A133	PRSS37	SNP	Missense_Mutation	7	141537798	C	A	30	67
BRCA	TCGA-C8-A133	SULF1	SNP	Missense_Mutation	8	70541787	C	A	17	48
BRCA	TCGA-C8-A133	LOC728683	SNP	Silent	9	68371770	G	A	44	64
BRCA	TCGA-C8-A134	SPAG17	SNP	Missense_Mutation	1	118582015	A	C	9	53
BRCA	TCGA-C8-A134	ANKRD34A	SNP	Missense_Mutation	1	145474686	C	T	24	76
BRCA	TCGA-C8-A134	FLG	SNP	Missense_Mutation	1	152284334	C	G	27	50
BRCA	TCGA-C8-A134	UBE2Q1	SNP	Missense_Mutation	1	154525280	G	A	37	97
BRCA	TCGA-C8-A134	SMG5	SNP	Missense_Mutation	1	156236362	G	C	41	67
BRCA	TCGA-C8-A134	ADCY10	SNP	Silent	1	167823634	C	G	23	46
BRCA	TCGA-C8-A134	HMCN1	SNP	Missense_Mutation	1	186115046	G	T	34	56
BRCA	TCGA-C8-A134	ZC3H11A	SNP	Missense_Mutation	1	203787708	G	A	46	92
BRCA	TCGA-C8-A134	CNTN2	SNP	Missense_Mutation	1	205042352	G	C	40	58
BRCA	TCGA-C8-A134	INTS7	SNP	Missense_Mutation	1	212180058	C	T	20	79
BRCA	TCGA-C8-A134	USH2A	SNP	Missense_Mutation	1	216348807	G	T	42	50
BRCA	TCGA-C8-A134	AGT	SNP	Missense_Mutation	1	230846038	C	A	17	50
BRCA	TCGA-C8-A134	ACTRT2	SNP	Missense_Mutation	1	2939179	G	T	43	95
BRCA	TCGA-C8-A134	ADAMTS14	SNP	Silent	10	72468454	C	T	28	83
BRCA	TCGA-C8-A134	ZMIZ1	SNP	Missense_Mutation	10	81067225	T	G	51	87
BRCA	TCGA-C8-A134	NXPE1	SNP	Missense_Mutation	11	114392917	C	G	20	76
BRCA	TCGA-C8-A134	PHLDB1	SNP	Missense_Mutation	11	118498583	G	T	33	62
BRCA	TCGA-C8-A134	OR8B12	SNP	Missense_Mutation	11	124412667	T	A	50	86
BRCA	TCGA-C8-A134	MUC5B	SNP	Silent	11	1269276	C	G	29	51
BRCA	TCGA-C8-A134	NAV2	SNP	Nonsense_Mutation	11	19961292	G	T	47	78
BRCA	TCGA-C8-A134	PRMT3	SNP	Silent	11	20417383	C	T	24	47
BRCA	TCGA-C8-A134	LGR4	SNP	Missense_Mutation	11	27390302	G	T	46	58
BRCA	TCGA-C8-A134	RAG2	SNP	Missense_Mutation	11	36614637	G	A	48	60
BRCA	TCGA-C8-A134	MADD	SNP	Missense_Mutation	11	47315517	C	A	24	65
BRCA	TCGA-C8-A134	CELF1	SNP	Missense_Mutation	11	47506035	C	G	32	100
BRCA	TCGA-C8-A134	OR52A1	SNP	Missense_Mutation	11	5172768	G	T	33	59
BRCA	TCGA-C8-A134	DAGLA	SNP	Missense_Mutation	11	61503794	T	C	58	84
BRCA	TCGA-C8-A134	BSCL2	SNP	Missense_Mutation	11	62459875	C	T	27	60
BRCA	TCGA-C8-A134	SLC25A45	SNP	Nonsense_Mutation	11	65143833	C	A	30	44
BRCA	TCGA-C8-A134	FAT3	SNP	Missense_Mutation	11	92531478	C	T	22	100
BRCA	TCGA-C8-A134	RIC8B	SNP	Missense_Mutation	12	107208904	G	T	41	83
BRCA	TCGA-C8-A134	RPH3A	SNP	Missense_Mutation	12	113314597	C	G	24	60
BRCA	TCGA-C8-A134	TBX3	SNP	Silent	12	115112369	C	G	23	47
BRCA	TCGA-C8-A134	TMEM132C	SNP	Missense_Mutation	12	129190322	G	A	42	83
BRCA	TCGA-C8-A134	OTOGL	SNP	Splice_site	12	80613594	G	A	44	80
BRCA	TCGA-C8-A134	SLC25A15	SNP	Missense_Mutation	13	41373296	G	T	33	59
BRCA	TCGA-C8-A134	TTC9	SNP	Missense_Mutation	14	71109059	G	T	33	66
BRCA	TCGA-C8-A134	DNAL1	SNP	Missense_Mutation	14	74125593	A	C	1	86
BRCA	TCGA-C8-A134	UNC13C	SNP	Silent	15	54590073	A	G	3	53
BRCA	TCGA-C8-A134	RASL12	SNP	Missense_Mutation	15	65350882	C	T	27	63
BRCA	TCGA-C8-A134	TLE3	SNP	Missense_Mutation	15	70350527	G	C	39	67
BRCA	TCGA-C8-A134	LOC728477	SNP	Missense_Mutation	15	90838200	G	C	44	72
BRCA	TCGA-C8-A134	GPR139	SNP	Missense_Mutation	16	20043104	C	A	18	96
BRCA	TCGA-C8-A134	CTCF	SNP	Silent	16	67645098	T	A	55	44
BRCA	TCGA-C8-A134	MSLNL	SNP	Silent	16	820069	G	T	35	52
BRCA	TCGA-C8-A134	CCDC144A	SNP	Missense_Mutation	17	16623911	G	C	48	49
BRCA	TCGA-C8-A134	C17orf47	SNP	Missense_Mutation	17	56620214	G	A	39	56
BRCA	TCGA-C8-A134	FBF1	SNP	Missense_Mutation	17	73923583	G	A	39	53
BRCA	TCGA-C8-A134	TP53	SNP	Missense_Mutation	17	7577120	C	T	19	94
BRCA	TCGA-C8-A134	USP36	SNP	Silent	17	76799928	C	T	27	56
BRCA	TCGA-C8-A134	CDH2	SNP	Silent	18	25572679	A	G	7	33
BRCA	TCGA-C8-A134	CNDP1	SNP	Missense_Mutation	18	72226583	A	C	11	75
BRCA	TCGA-C8-A134	ZNF491	SNP	Missense_Mutation	19	11917733	C	T	20	61
BRCA	TCGA-C8-A134	LGALS7	SNP	Missense_Mutation	19	39262536	G	A	39	42
BRCA	TCGA-C8-A134	MAP3K10	SNP	Silent	19	40698100	C	G	27	54
BRCA	TCGA-C8-A134	CYP2A7	SNP	Silent	19	41384689	G	A	36	70
BRCA	TCGA-C8-A134	SRRM5	SNP	Silent	19	44117665	T	A	53	57
BRCA	TCGA-C8-A134	NLRP5	SNP	Silent	19	56538817	C	T	31	19
BRCA	TCGA-C8-A134	ZNF418	SNP	Missense_Mutation	19	58437810	T	C	62	49
BRCA	TCGA-C8-A134	ODC1	SNP	Silent	2	10584253	C	T	29	56
BRCA	TCGA-C8-A134	PLEKHB2	SNP	Missense_Mutation	2	132110630	C	T	19	53
BRCA	TCGA-C8-A134	MSTN	SNP	Missense_Mutation	2	190924922	T	G	54	77
BRCA	TCGA-C8-A134	FARP2	SNP	Nonsense_Mutation	2	242380741	T	A	63	73
BRCA	TCGA-C8-A134	ADCY3	SNP	Silent	2	25062756	G	A	39	32
BRCA	TCGA-C8-A134	SULT6B1	SNP	Silent	2	37402347	A	G	4	48
BRCA	TCGA-C8-A134	RTKN	SNP	Silent	2	74659725	T	C	55	39
BRCA	TCGA-C8-A134	AHCY	SNP	Missense_Mutation	20	32880287	C	G	31	100
BRCA	TCGA-C8-A134	CTCFL	SNP	Missense_Mutation	20	56098927	A	T	6	61
BRCA	TCGA-C8-A134	C20orf151	SNP	Missense_Mutation	20	60988927	C	A	21	54
BRCA	TCGA-C8-A134	HSPA13	SNP	Silent	21	15750638	C	T	20	50
BRCA	TCGA-C8-A134	ITGB2	SNP	Silent	21	46308699	C	T	24	70
BRCA	TCGA-C8-A134	H2BFWT	DEL	Frame_Shift_Del	23	103267771	G	-	39	48
BRCA	TCGA-C8-A134	TBC1D8B	SNP	Missense_Mutation	23	106065364	C	A	24	95
BRCA	TCGA-C8-A134	IGSF1	SNP	Missense_Mutation	23	130419141	A	G	15	54
BRCA	TCGA-C8-A134	SLC10A3	SNP	Missense_Mutation	23	153716008	C	A	32	57
BRCA	TCGA-C8-A134	CXorf22	SNP	Missense_Mutation	23	35984726	A	T	3	63
BRCA	TCGA-C8-A134	EDA2R	SNP	Missense_Mutation	23	65819549	G	C	37	60
BRCA	TCGA-C8-A134	RPS6KA6	SNP	Missense_Mutation	23	83319326	G	T	47	94
BRCA	TCGA-C8-A134	TAGLN3	SNP	Silent	3	111730662	A	C	7	49
BRCA	TCGA-C8-A134	PARP14	SNP	Missense_Mutation	3	122414437	G	C	35	74
BRCA	TCGA-C8-A134	TSEN2	SNP	Missense_Mutation	3	12531408	T	C	52	75
BRCA	TCGA-C8-A134	FAM194A	SNP	Missense_Mutation	3	150387188	C	T	18	63
BRCA	TCGA-C8-A134	HACL1	SNP	Silent	3	15613244	C	T	20	58
BRCA	TCGA-C8-A134	RFC4	SNP	Missense_Mutation	3	186518913	C	G	30	95
BRCA	TCGA-C8-A134	OR5H2	SNP	Missense_Mutation	3	98002196	A	C	15	51
BRCA	TCGA-C8-A134	PCDHA7	SNP	Missense_Mutation	5	140214974	G	C	36	57
BRCA	TCGA-C8-A134	AIG1	SNP	Nonsense_Mutation	6	143486276	A	T	9	85
BRCA	TCGA-C8-A134	STXBP5	SNP	Missense_Mutation	6	147556463	A	G	4	90
BRCA	TCGA-C8-A134	KHDRBS2	SNP	Silent	6	62688082	A	G	8	62
BRCA	TCGA-C8-A134	PPP1R3A	DEL	Frame_Shift_Del	7	113558810	T	-	50	91
BRCA	TCGA-C8-A134	PPP1R3A	SNP	Missense_Mutation	7	113558812	A	C	5	79
BRCA	TCGA-C8-A134	CFTR	SNP	Splice_site	7	117267576	A	T	12	89
BRCA	TCGA-C8-A134	DFNA5	DEL	In_Frame_Del	7	24747815	CTGTTGTGGCTCAGGCAG	-	32	61
BRCA	TCGA-C8-A134	ELN	SNP	Silent	7	73474244	T	A	55	26
BRCA	TCGA-C8-A134	SRCRB4D	SNP	Missense_Mutation	7	76019578	A	T	10	91
BRCA	TCGA-C8-A134	RAD21	SNP	Missense_Mutation	8	117862992	C	A	28	54
BRCA	TCGA-C8-A134	MFSD3	SNP	Missense_Mutation	8	145735356	G	C	43	92
BRCA	TCGA-C8-A134	CPNE3	SNP	Missense_Mutation	8	87549810	A	T	10	93
BRCA	TCGA-C8-A134	SLC24A2	SNP	Missense_Mutation	9	19786554	G	T	33	62
BRCA	TCGA-C8-A134	TEK	SNP	Missense_Mutation	9	27109613	C	T	32	74
BRCA	TCGA-C8-A135	HRNR	SNP	Missense_Mutation	1	152191856	G	T	41	56
BRCA	TCGA-C8-A135	CHRNB2	SNP	Missense_Mutation	1	154542778	C	G	17	58
BRCA	TCGA-C8-A135	OR2T11	SNP	Silent	1	248789815	G	T	45	52
BRCA	TCGA-C8-A135	ANGPTL3	SNP	Missense_Mutation	1	63066808	G	C	33	76
BRCA	TCGA-C8-A135	GAD2	SNP	Missense_Mutation	10	26534920	G	T	48	61
BRCA	TCGA-C8-A135	AKR1C2	SNP	Nonsense_Mutation	10	5043762	G	A	39	42
BRCA	TCGA-C8-A135	ALDH18A1	SNP	Missense_Mutation	10	97386504	C	T	26	92
BRCA	TCGA-C8-A135	GRIA4	SNP	Missense_Mutation	11	105481779	G	A	38	82
BRCA	TCGA-C8-A135	CAPN1	SNP	Missense_Mutation	11	64973997	C	T	27	95
BRCA	TCGA-C8-A135	CTSF	SNP	Missense_Mutation	11	66335472	C	T	19	52
BRCA	TCGA-C8-A135	CARNS1	SNP	Missense_Mutation	11	67186344	C	A	17	77
BRCA	TCGA-C8-A135	KRT5	SNP	Silent	12	52913583	G	T	39	20
BRCA	TCGA-C8-A135	RABGGTA	SNP	Missense_Mutation	14	24737947	C	T	23	58
BRCA	TCGA-C8-A135	SH2B1	SNP	Missense_Mutation	16	28880551	C	T	23	56
BRCA	TCGA-C8-A135	ZNF469	SNP	Missense_Mutation	16	88505324	A	C	9	55
BRCA	TCGA-C8-A135	SGK494	SNP	Silent	17	26938661	C	T	29	57
BRCA	TCGA-C8-A135	ERBB2	SNP	Missense_Mutation	17	37880261	G	C	33	98
BRCA	TCGA-C8-A135	COL1A1	SNP	Missense_Mutation	17	48273322	C	T	27	69
BRCA	TCGA-C8-A135	ABCA5	SNP	Silent	17	67283782	A	G	4	49
BRCA	TCGA-C8-A135	SLC25A19	SNP	Missense_Mutation	17	73274371	C	T	31	94
BRCA	TCGA-C8-A135	TP53	DEL	Frame_Shift_Del	17	7577558	G	-	35	64
BRCA	TCGA-C8-A135	SPIRE1	SNP	Silent	18	12479722	G	A	39	44
BRCA	TCGA-C8-A135	EIF3G	SNP	Missense_Mutation	19	10229782	G	A	42	74
BRCA	TCGA-C8-A135	ZSCAN18	SNP	Silent	19	58601320	G	C	41	54
BRCA	TCGA-C8-A135	NCKAP1	SNP	Missense_Mutation	2	183800041	C	T	26	100
BRCA	TCGA-C8-A135	MYT1L	SNP	Missense_Mutation	2	1906950	G	A	37	72
BRCA	TCGA-C8-A135	SGPP2	SNP	Missense_Mutation	2	223423433	G	A	40	93
BRCA	TCGA-C8-A135	OR6B3	SNP	Missense_Mutation	2	240985219	G	A	40	43
BRCA	TCGA-C8-A135	ANO7	SNP	Missense_Mutation	2	242157277	G	T	43	56
BRCA	TCGA-C8-A135	EML4	INS	Frame_Shift_Ins	2	42472741	-	A	53	89
BRCA	TCGA-C8-A135	VPS54	SNP	Missense_Mutation	2	64147047	T	C	62	74
BRCA	TCGA-C8-A135	CDH4	SNP	Missense_Mutation	20	60419731	C	A	30	94
BRCA	TCGA-C8-A135	CELSR3	SNP	Missense_Mutation	3	48694433	C	T	27	60
BRCA	TCGA-C8-A135	SCLT1	SNP	Missense_Mutation	4	129880840	T	A	62	56
BRCA	TCGA-C8-A135	SLC2A9	SNP	Silent	4	9998464	G	A	37	44
BRCA	TCGA-C8-A135	SLIT3	SNP	Missense_Mutation	5	168189673	C	G	24	74
BRCA	TCGA-C8-A135	PROP1	SNP	Missense_Mutation	5	177421244	G	A	39	65
BRCA	TCGA-C8-A135	HNRNPH1	SNP	Missense_Mutation	5	179043881	C	T	26	74
BRCA	TCGA-C8-A135	TBC1D9B	SNP	Silent	5	179294634	G	A	34	43
BRCA	TCGA-C8-A135	PIK3R1	SNP	Missense_Mutation	5	67589556	A	G	12	89
BRCA	TCGA-C8-A135	B3GALT4	SNP	Missense_Mutation	6	33245414	T	G	55	85
BRCA	TCGA-C8-A135	COL9A1	SNP	Silent	6	70942386	G	A	39	25
BRCA	TCGA-C8-A135	PSMC2	SNP	Silent	7	103004751	T	C	59	50
BRCA	TCGA-C8-A135	SLC4A2	SNP	Missense_Mutation	7	150761705	C	T	19	67
BRCA	TCGA-C8-A135	GARS	SNP	Missense_Mutation	7	30643153	G	A	37	98
BRCA	TCGA-C8-A135	RABGEF1	DEL	Frame_Shift_Del	7	66236971	CCTG	-	22	52
BRCA	TCGA-C8-A135	ZNF12	SNP	Missense_Mutation	7	6730822	T	C	64	85
BRCA	TCGA-C8-A135	ZFPM2	SNP	Silent	8	106815514	G	A	34	70
BRCA	TCGA-C8-A135	ANGPT1	SNP	Silent	8	108359218	G	C	33	47
BRCA	TCGA-C8-A135	ATP6V1H	SNP	Missense_Mutation	8	54708209	G	A	37	74
BRCA	TCGA-C8-A135	SVEP1	DEL	Splice_site	9	113141625	ACCTCTG	-	14	91
BRCA	TCGA-C8-A135	TUBB4B	SNP	Missense_Mutation	9	140137465	C	A	32	65
BRCA	TCGA-C8-A135	TEK	SNP	Missense_Mutation	9	27209143	G	A	35	100
BRCA	TCGA-C8-A135	FAM75D1	SNP	Missense_Mutation	9	84608727	G	T	34	49
BRCA	TCGA-C8-A137	HRNR	INS	Frame_Shift_Ins	1	152191302	-	G	63	53
BRCA	TCGA-C8-A137	DCST1	SNP	Nonsense_Mutation	1	155018634	G	T	45	83
BRCA	TCGA-C8-A137	ENSG00000197511	SNP	Missense_Mutation	1	16862282	G	A	46	53
BRCA	TCGA-C8-A137	DIRAS3	SNP	Silent	1	68512642	G	A	41	62
BRCA	TCGA-C8-A137	C1orf173	SNP	Silent	1	75078444	G	A	45	56
BRCA	TCGA-C8-A137	KNDC1	SNP	Missense_Mutation	10	135026343	G	A	38	49
BRCA	TCGA-C8-A137	LAYN	SNP	Missense_Mutation	11	111414717	G	A	37	61
BRCA	TCGA-C8-A137	C11orf21	SNP	Missense_Mutation	11	2321978	C	G	29	57
BRCA	TCGA-C8-A137	QSER1	SNP	Missense_Mutation	11	32955061	G	T	44	51
BRCA	TCGA-C8-A137	OR5I1	SNP	Missense_Mutation	11	55703121	G	C	33	54
BRCA	TCGA-C8-A137	KCTD21	SNP	Missense_Mutation	11	77885216	C	T	31	71
BRCA	TCGA-C8-A137	TROAP	SNP	Missense_Mutation	12	49724652	C	G	32	57
BRCA	TCGA-C8-A137	KRT81	SNP	Silent	12	52681912	C	G	27	53
BRCA	TCGA-C8-A137	SLC2A14	SNP	Missense_Mutation	12	7981305	G	A	40	40
BRCA	TCGA-C8-A137	OTOGL	SNP	Missense_Mutation	12	80730728	A	G	9	85
BRCA	TCGA-C8-A137	LTBP2	SNP	Missense_Mutation	14	74970002	C	T	27	51
BRCA	TCGA-C8-A137	SERPINA6	SNP	Nonstop_Mutation	14	94770757	A	C	14	52
BRCA	TCGA-C8-A137	LOC653061	INS	Frame_Shift_Ins	15	23609313	-	T	42	33
BRCA	TCGA-C8-A137	LOC653061	DEL	In_Frame_Del	15	23609317	TGG	-	55	45
BRCA	TCGA-C8-A137	COX5A	SNP	Missense_Mutation	15	75221511	G	A	37	82
BRCA	TCGA-C8-A137	ZSCAN2	SNP	Silent	15	85164365	G	A	33	50
BRCA	TCGA-C8-A137	MRPS11	SNP	Splice_Site	15	89020219	G	A	33	93
BRCA	TCGA-C8-A137	UQCRC2	SNP	Missense_Mutation	16	21994417	G	C	33	64
BRCA	TCGA-C8-A137	ARHGAP17	SNP	Missense_Mutation	16	24942551	G	A	41	59
BRCA	TCGA-C8-A137	MAZ	SNP	Nonsense_Mutation	16	29821526	C	T	29	71
BRCA	TCGA-C8-A137	ITGAM	SNP	Splice_Site	16	31341486	G	T	44	75
BRCA	TCGA-C8-A137	CCT6B	SNP	Missense_Mutation	17	33278998	C	G	32	74
BRCA	TCGA-C8-A137	COASY	SNP	Silent	17	40715174	C	T	22	54
BRCA	TCGA-C8-A137	HGS	SNP	Missense_Mutation	17	79653400	G	T	38	93
BRCA	TCGA-C8-A137	MYADML2	SNP	Silent	17	79899495	G	A	43	49
BRCA	TCGA-C8-A137	MAP3K10	SNP	Missense_Mutation	19	40711935	C	T	19	65
BRCA	TCGA-C8-A137	MBOAT7	SNP	Silent	19	54691160	G	A	40	51
BRCA	TCGA-C8-A137	MCM6	SNP	Missense_Mutation	2	136602246	C	T	31	100
BRCA	TCGA-C8-A137	BBS5	SNP	Missense_Mutation	2	170343618	C	T	32	100
BRCA	TCGA-C8-A137	OTOF	SNP	Missense_Mutation	2	26707384	G	A	40	80
BRCA	TCGA-C8-A137	LHCGR	SNP	Missense_Mutation	2	48915909	A	T	8	92
BRCA	TCGA-C8-A137	FAHD2A	SNP	Missense_Mutation	2	96076768	G	A	48	50
BRCA	TCGA-C8-A137	ARHGAP40	SNP	Missense_Mutation	20	37270404	C	T	29	64
BRCA	TCGA-C8-A137	BMP2	SNP	Missense_Mutation	20	6758938	A	T	12	62
BRCA	TCGA-C8-A137	TSPAN7	SNP	Missense_Mutation	23	38533518	C	A	20	56
BRCA	TCGA-C8-A137	P2RY4	SNP	Missense_Mutation	23	69479266	G	A	40	58
BRCA	TCGA-C8-A137	HSPA4L	SNP	Silent	4	128751921	G	A	47	56
BRCA	TCGA-C8-A137	CLDN24	SNP	Missense_Mutation	4	184243151	C	G	32	53
BRCA	TCGA-C8-A137	PDGFRA	SNP	Silent	4	55133783	C	G	29	52
BRCA	TCGA-C8-A137	PCDHAC2	SNP	Missense_Mutation	5	140348769	C	A	29	59
BRCA	TCGA-C8-A137	ENSG00000170089	SNP	Missense_Mutation	5	177305674	G	C	45	87
BRCA	TCGA-C8-A137	ATAT1	SNP	Silent	6	30595007	C	T	30	50
BRCA	TCGA-C8-A137	TWISTNB	SNP	Missense_Mutation	7	19739894	T	A	61	89
BRCA	TCGA-C8-A137	SNX10	SNP	Missense_Mutation	7	26404752	G	A	33	78
BRCA	TCGA-C8-A137	ZNF498	SNP	Nonsense_Mutation	7	99219167	G	T	47	60
BRCA	TCGA-C8-A137	C8orf48	SNP	Missense_Mutation	8	13425043	G	A	45	48
BRCA	TCGA-C8-A137	FAM110B	SNP	Silent	8	59059479	C	T	31	48
BRCA	TCGA-C8-A137	FPGS	SNP	Missense_Mutation	9	130575737	C	T	30	53
BRCA	TCGA-C8-A137	PAX5	DEL	Frame_Shift_Del	9	37020655	A	-	5	92
BRCA	TCGA-C8-A137	FRMPD1	SNP	Missense_Mutation	9	37731074	G	A	40	76
BRCA	TCGA-C8-A138	TDRD5	SNP	Silent	1	179604942	C	A	29	47
BRCA	TCGA-C8-A138	EPRS	SNP	Missense_Mutation	1	220152916	C	T	17	99
BRCA	TCGA-C8-A138	ZNF695	SNP	Missense_Mutation	1	247151327	C	A	24	54
BRCA	TCGA-C8-A138	STIM1	SNP	Missense_Mutation	11	4112595	G	A	40	69
BRCA	TCGA-C8-A138	OR52J3	SNP	Missense_Mutation	11	5067871	T	C	59	62
BRCA	TCGA-C8-A138	SLC22A9	SNP	Missense_Mutation	11	63175599	G	A	40	51
BRCA	TCGA-C8-A138	BRMS1	SNP	Nonsense_Mutation	11	66105190	C	T	30	52
BRCA	TCGA-C8-A138	PC	SNP	Missense_Mutation	11	66631396	C	T	27	92
BRCA	TCGA-C8-A138	SHANK2	SNP	Missense_Mutation	11	70333654	C	A	32	78
BRCA	TCGA-C8-A138	ACER3	SNP	Missense_Mutation	11	76696702	G	T	33	64
BRCA	TCGA-C8-A138	PCBP2	SNP	Silent	12	53849274	G	A	35	49
BRCA	TCGA-C8-A138	TMTC2	SNP	Missense_Mutation	12	83251115	T	G	59	88
BRCA	TCGA-C8-A138	A2M	SNP	Silent	12	9242995	G	A	40	50
BRCA	TCGA-C8-A138	MTHFD1	SNP	Silent	14	64898264	C	A	29	62
BRCA	TCGA-C8-A138	CPEB1	SNP	Missense_Mutation	15	83224732	A	C	6	49
BRCA	TCGA-C8-A138	PARD6A	SNP	Silent	16	67695950	C	T	19	51
BRCA	TCGA-C8-A138	ANKFN1	SNP	Silent	17	54431265	C	T	30	49
BRCA	TCGA-C8-A138	NXN	SNP	Silent	17	722712	G	T	38	56
BRCA	TCGA-C8-A138	TP53	DEL	Frame_Shift_Del	17	7576924	GT	-	36	51
BRCA	TCGA-C8-A138	PTPRM	SNP	Missense_Mutation	18	8376551	G	A	40	100
BRCA	TCGA-C8-A138	IRGC	SNP	Missense_Mutation	19	44222997	C	T	23	59
BRCA	TCGA-C8-A138	MYH14	SNP	Missense_Mutation	19	50771580	C	T	23	75
BRCA	TCGA-C8-A138	LIM2	SNP	Missense_Mutation	19	51890496	G	A	39	33
BRCA	TCGA-C8-A138	NEB	SNP	Missense_Mutation	2	152410473	T	C	50	54
BRCA	TCGA-C8-A138	ALS2CR11	SNP	Silent	2	202356525	T	C	52	45
BRCA	TCGA-C8-A138	ZDBF2	SNP	Missense_Mutation	2	207174608	G	T	45	50
BRCA	TCGA-C8-A138	AQP12A	SNP	Silent	2	241631799	C	T	25	47
BRCA	TCGA-C8-A138	ZNFX1	SNP	Missense_Mutation	20	47865218	G	A	41	69
BRCA	TCGA-C8-A138	TRAPPC10	DEL	Frame_Shift_Del	21	45475668	T	-	56	92
BRCA	TCGA-C8-A138	TPST2	SNP	Missense_Mutation	22	26937270	C	T	25	75
BRCA	TCGA-C8-A138	SHANK3	SNP	Missense_Mutation	22	51143180	G	A	37	96
BRCA	TCGA-C8-A138	GPM6B	SNP	Missense_Mutation	23	13834993	C	G	30	82
BRCA	TCGA-C8-A138	GAGE13	SNP	Missense_Mutation	23	49192696	C	T	23	57
BRCA	TCGA-C8-A138	ATP2B2	SNP	Silent	3	10387757	G	A	40	50
BRCA	TCGA-C8-A138	LSG1	SNP	Silent	3	194387183	C	T	30	46
BRCA	TCGA-C8-A138	RARB	SNP	Nonsense_Mutation	3	25542765	C	A	26	64
BRCA	TCGA-C8-A138	PLCD1	DEL	In_Frame_Del	3	38051418	TGACCCCATCCA	-	59	50
BRCA	TCGA-C8-A138	STAB1	SNP	Missense_Mutation	3	52552806	G	A	39	50
BRCA	TCGA-C8-A138	SLMAP	INS	In_Frame_Ins	3	57908744	-	AAT	9	62
BRCA	TCGA-C8-A138	LRBA	SNP	Missense_Mutation	4	151793884	G	A	37	98
BRCA	TCGA-C8-A138	LNX1	SNP	Missense_Mutation	4	54362438	G	T	48	74
BRCA	TCGA-C8-A138	C4orf50	SNP	Silent	4	5977632	G	A	43	47
BRCA	TCGA-C8-A138	REV3L	SNP	Missense_Mutation	6	111696389	T	C	62	88
BRCA	TCGA-C8-A138	SLC22A3	SNP	Nonsense_Mutation	6	160864753	G	T	33	81
BRCA	TCGA-C8-A138	DAAM2	SNP	Missense_Mutation	6	39832810	G	A	40	77
BRCA	TCGA-C8-A138	RREB1	SNP	Missense_Mutation	6	7211836	G	A	41	75
BRCA	TCGA-C8-A138	CCDC136	SNP	Missense_Mutation	7	128444776	G	A	34	65
BRCA	TCGA-C8-A138	FASTK	SNP	Missense_Mutation	7	150774052	G	C	37	86
BRCA	TCGA-C8-A138	TEX15	SNP	Silent	8	30700783	T	C	57	50
BRCA	TCGA-C8-A138	NTNG2	SNP	Missense_Mutation	9	135073714	G	A	38	98
BRCA	TCGA-C8-A1HE	RRNAD1	SNP	Missense_Mutation	1	156702141	G	T	39	69
BRCA	TCGA-C8-A1HE	USH2A	SNP	Missense_Mutation	1	216108090	C	T	23	57
BRCA	TCGA-C8-A1HE	FDXACB1	SNP	Nonsense_Mutation	11	111749772	G	A	45	32
BRCA	TCGA-C8-A1HE	ABCC9	SNP	Missense_Mutation	12	21953991	C	T	27	77
BRCA	TCGA-C8-A1HE	DCLK1	SNP	Splice_Site	13	36367617	C	T	24	97
BRCA	TCGA-C8-A1HE	FAM124A	SNP	Missense_Mutation	13	51855093	G	A	37	55
BRCA	TCGA-C8-A1HE	GSC	SNP	Silent	14	95234888	C	T	31	49
BRCA	TCGA-C8-A1HE	CHSY1	SNP	Missense_Mutation	15	101718167	A	T	7	93
BRCA	TCGA-C8-A1HE	SPTBN5	SNP	Missense_Mutation	15	42166578	G	A	33	52
BRCA	TCGA-C8-A1HE	SLC5A11	SNP	Missense_Mutation	16	24869995	C	A	30	46
BRCA	TCGA-C8-A1HE	CREBBP	SNP	Missense_Mutation	16	3808953	G	A	40	80
BRCA	TCGA-C8-A1HE	HOXB13	SNP	Nonsense_Mutation	17	46805422	C	T	30	93
BRCA	TCGA-C8-A1HE	NACA2	SNP	Nonsense_Mutation	17	59668409	G	A	47	66
BRCA	TCGA-C8-A1HE	SDK2	SNP	Missense_Mutation	17	71427712	G	C	38	93
BRCA	TCGA-C8-A1HE	ZNF442	SNP	Missense_Mutation	19	12461860	C	T	27	43
BRCA	TCGA-C8-A1HE	ZNF585A	SNP	Missense_Mutation	19	37643456	A	C	11	50
BRCA	TCGA-C8-A1HE	TBC1D17	SNP	Missense_Mutation	19	50381800	G	A	33	83
BRCA	TCGA-C8-A1HE	MYBPC2	SNP	Missense_Mutation	19	50946815	G	A	45	90
BRCA	TCGA-C8-A1HE	ZNF525	SNP	Missense_Mutation	19	53885220	G	T	41	67
BRCA	TCGA-C8-A1HE	ZFAND2B	SNP	Silent	2	220073995	C	T	25	51
BRCA	TCGA-C8-A1HE	CUL3	SNP	Silent	2	225362533	G	A	45	59
BRCA	TCGA-C8-A1HE	HJURP	SNP	Missense_Mutation	2	234749835	G	A	48	44
BRCA	TCGA-C8-A1HE	BIRC6	SNP	Silent	2	32824940	C	T	29	65
BRCA	TCGA-C8-A1HE	WFDC5	SNP	Missense_Mutation	20	43739300	G	A	39	76
BRCA	TCGA-C8-A1HE	PREX1	SNP	Silent	20	47254270	G	A	35	58
BRCA	TCGA-C8-A1HE	BRWD1	SNP	Silent	21	40670464	G	A	33	54
BRCA	TCGA-C8-A1HE	TCF20	SNP	Silent	22	42608681	G	A	45	60
BRCA	TCGA-C8-A1HE	NGFRAP1	SNP	Missense_Mutation	23	102632641	G	A	45	54
BRCA	TCGA-C8-A1HE	MGLL	DEL	Frame_Shift_Del	3	127439973	TCTCT	-	54	76
BRCA	TCGA-C8-A1HE	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-C8-A1HE	MLH1	SNP	Missense_Mutation	3	37089169	G	C	45	99
BRCA	TCGA-C8-A1HE	STOX2	SNP	Missense_Mutation	4	184922544	T	A	54	93
BRCA	TCGA-C8-A1HE	PDS5A	SNP	Silent	4	39846302	C	T	29	57
BRCA	TCGA-C8-A1HE	ODZ2	SNP	Missense_Mutation	5	167673880	C	T	30	100
BRCA	TCGA-C8-A1HE	TSPYL1	SNP	Missense_Mutation	6	116600543	C	T	29	40
BRCA	TCGA-C8-A1HE	EZR	SNP	Missense_Mutation	6	159197489	G	A	33	85
BRCA	TCGA-C8-A1HE	MAP3K4	SNP	Silent	6	161502011	C	T	29	72
BRCA	TCGA-C8-A1HE	EFHC1	SNP	Missense_Mutation	6	52329847	G	C	33	43
BRCA	TCGA-C8-A1HE	TBX18	SNP	Silent	6	85466569	C	A	31	47
BRCA	TCGA-C8-A1HE	ST7	SNP	Silent	7	116863013	A	G	4	47
BRCA	TCGA-C8-A1HE	PARP12	SNP	Silent	7	139756696	G	A	47	52
BRCA	TCGA-C8-A1HE	PDE1C	SNP	Missense_Mutation	7	31864536	T	C	54	63
BRCA	TCGA-C8-A1HE	FAM133B	SNP	Splice_site	7	92207495	C	G	32	63
BRCA	TCGA-C8-A1HE	SNTB1	SNP	Missense_Mutation	8	121644761	C	T	29	72
BRCA	TCGA-C8-A1HE	C9orf174	SNP	Missense_Mutation	9	100090372	A	G	5	56
BRCA	TCGA-C8-A1HE	RECK	SNP	Nonsense_Mutation	9	36063860	C	T	31	82
BRCA	TCGA-C8-A1HF	ZSCAN20	SNP	Silent	1	33959019	C	T	26	55
BRCA	TCGA-C8-A1HF	IFIT5	SNP	Nonsense_Mutation	10	91178167	T	G	61	66
BRCA	TCGA-C8-A1HF	GRAMD1B	SNP	Missense_Mutation	11	123448232	G	A	40	95
BRCA	TCGA-C8-A1HF	MMP19	SNP	Missense_Mutation	12	56236540	C	A	24	51
BRCA	TCGA-C8-A1HF	KIF26A	SNP	Missense_Mutation	14	104624146	C	G	22	49
BRCA	TCGA-C8-A1HF	FERMT2	SNP	Missense_Mutation	14	53325259	C	G	32	100
BRCA	TCGA-C8-A1HF	LOC440243	SNP	Missense_Mutation	15	23572642	C	T	30	51
BRCA	TCGA-C8-A1HF	ENSG00000237362	INS	Frame_Shift_Ins	15	80736696	-	GT	47	54
BRCA	TCGA-C8-A1HF	MYH13	SNP	Missense_Mutation	17	10247167	G	A	37	74
BRCA	TCGA-C8-A1HF	PRPF8	SNP	Missense_Mutation	17	1561627	T	C	51	93
BRCA	TCGA-C8-A1HF	TP53	SNP	Missense_Mutation	17	7578395	G	A	47	97
BRCA	TCGA-C8-A1HF	MOCOS	SNP	Silent	18	33785149	C	T	27	34
BRCA	TCGA-C8-A1HF	NEDD4L	SNP	Missense_Mutation	18	55992246	G	C	45	97
BRCA	TCGA-C8-A1HF	CACTIN	SNP	Missense_Mutation	19	3620765	C	G	32	51
BRCA	TCGA-C8-A1HF	TJP3	SNP	Silent	19	3736280	C	T	23	18
BRCA	TCGA-C8-A1HF	CA11	SNP	Silent	19	49142211	G	A	36	46
BRCA	TCGA-C8-A1HF	LIM2	SNP	Silent	19	51890455	T	A	58	44
BRCA	TCGA-C8-A1HF	RBL1	SNP	Missense_Mutation	20	35675538	A	C	4	90
BRCA	TCGA-C8-A1HF	RPS21	SNP	Silent	20	60963388	C	T	30	47
BRCA	TCGA-C8-A1HF	RUNX1	SNP	Silent	21	36206753	C	T	29	59
BRCA	TCGA-C8-A1HF	FTCD	SNP	Missense_Mutation	21	47565423	T	C	58	59
BRCA	TCGA-C8-A1HF	CNGA2	SNP	Missense_Mutation	23	150912895	G	A	45	62
BRCA	TCGA-C8-A1HF	BEND2	SNP	Missense_Mutation	23	18234761	T	A	61	26
BRCA	TCGA-C8-A1HF	ARMC8	DEL	Frame_Shift_Del	3	137991869	G	-	45	83
BRCA	TCGA-C8-A1HF	PIK3CA	SNP	Silent	3	178937445	T	G	62	58
BRCA	TCGA-C8-A1HF	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-C8-A1HF	TTC29	SNP	Silent	4	147741289	G	A	33	65
BRCA	TCGA-C8-A1HF	EDNRA	SNP	Missense_Mutation	4	148441015	C	T	27	71
BRCA	TCGA-C8-A1HF	ITK	SNP	Missense_Mutation	5	156659362	G	T	33	66
BRCA	TCGA-C8-A1HF	PREP	SNP	Missense_Mutation	6	105816780	C	T	29	89
BRCA	TCGA-C8-A1HF	LPA	SNP	Splice_Site	6	161016385	C	T	18	53
BRCA	TCGA-C8-A1HF	AHCYL2	SNP	Missense_Mutation	7	129008388	G	C	47	81
BRCA	TCGA-C8-A1HF	COL27A1	SNP	Missense_Mutation	9	117071730	G	A	39	62
BRCA	TCGA-C8-A1HG	NBPF12	SNP	Missense_Mutation	1	146400130	C	A	20	51
BRCA	TCGA-C8-A1HG	CD1E	SNP	Silent	1	158326560	C	T	32	42
BRCA	TCGA-C8-A1HG	ZP4	SNP	Missense_Mutation	1	238048592	T	C	49	83
BRCA	TCGA-C8-A1HG	ZDHHC6	SNP	Missense_Mutation	10	114190585	C	T	32	83
BRCA	TCGA-C8-A1HG	ETS1	SNP	Silent	11	128354830	G	C	35	50
BRCA	TCGA-C8-A1HG	SSH1	SNP	Nonsense_Mutation	12	109185905	G	A	47	44
BRCA	TCGA-C8-A1HG	NELL2	SNP	Silent	12	45269656	G	A	46	62
BRCA	TCGA-C8-A1HG	DPY19L2	SNP	Nonsense_Mutation	12	64055199	C	T	30	61
BRCA	TCGA-C8-A1HG	TRHDE	SNP	Missense_Mutation	12	72667271	A	T	2	56
BRCA	TCGA-C8-A1HG	VPS13C	SNP	Missense_Mutation	15	62146723	G	A	40	50
BRCA	TCGA-C8-A1HG	CORO7	SNP	Nonsense_Mutation	16	4412030	C	T	26	85
BRCA	TCGA-C8-A1HG	ESRP2	SNP	Missense_Mutation	16	68265420	G	A	37	67
BRCA	TCGA-C8-A1HG	KRT33A	SNP	Missense_Mutation	17	39503181	T	G	55	58
BRCA	TCGA-C8-A1HG	KIF2B	SNP	Missense_Mutation	17	51900989	G	C	41	54
BRCA	TCGA-C8-A1HG	TP53	SNP	Missense_Mutation	17	7578509	A	G	7	67
BRCA	TCGA-C8-A1HG	CTC1	SNP	Silent	17	8151340	C	A	22	50
BRCA	TCGA-C8-A1HG	FHOD3	SNP	Silent	18	34238119	C	T	23	46
BRCA	TCGA-C8-A1HG	EIF3G	SNP	Silent	19	10226169	G	A	40	48
BRCA	TCGA-C8-A1HG	MUC16	SNP	Silent	19	9000463	C	T	23	17
BRCA	TCGA-C8-A1HG	CCDC115	DEL	In_Frame_Del	2	131099725	CTT	-	24	42
BRCA	TCGA-C8-A1HG	TTC31	SNP	Splice_site	2	74719773	C	T	27	54
BRCA	TCGA-C8-A1HG	ATP9A	INS	Frame_Shift_Ins	20	50329531	-	G	55	87
BRCA	TCGA-C8-A1HG	COL6A2	SNP	Silent	21	47539719	C	T	23	35
BRCA	TCGA-C8-A1HG	TRMT2A	SNP	Missense_Mutation	22	20103765	G	A	42	60
BRCA	TCGA-C8-A1HG	SMCR7L	SNP	Silent	22	39907907	G	A	39	42
BRCA	TCGA-C8-A1HG	TRPC5	SNP	Missense_Mutation	23	111155832	C	T	31	99
BRCA	TCGA-C8-A1HG	PCDH19	SNP	Silent	23	99661925	G	A	40	52
BRCA	TCGA-C8-A1HG	P2RY13	SNP	Missense_Mutation	3	151046371	A	G	2	47
BRCA	TCGA-C8-A1HG	MAGI1	SNP	Missense_Mutation	3	65361584	C	T	23	89
BRCA	TCGA-C8-A1HG	KIAA0922	SNP	Silent	4	154479493	C	G	30	48
BRCA	TCGA-C8-A1HG	NOP14	SNP	Missense_Mutation	4	2955267	C	G	32	78
BRCA	TCGA-C8-A1HG	HGFAC	SNP	Silent	4	3445881	C	T	27	32
BRCA	TCGA-C8-A1HG	EPHA5	SNP	Missense_Mutation	4	66197758	G	A	39	86
BRCA	TCGA-C8-A1HG	SPP1	SNP	Missense_Mutation	4	88901223	T	C	59	53
BRCA	TCGA-C8-A1HG	HEATR7B2	SNP	Silent	5	41033173	G	A	35	77
BRCA	TCGA-C8-A1HG	SCGN	SNP	Missense_Mutation	6	25701484	G	A	40	59
BRCA	TCGA-C8-A1HG	FKSG83	SNP	Missense_Mutation	6	27293123	C	T	32	36
BRCA	TCGA-C8-A1HG	FKSG83	SNP	Missense_Mutation	6	27293194	C	G	29	42
BRCA	TCGA-C8-A1HG	DOPEY1	SNP	Missense_Mutation	6	83863703	A	T	3	67
BRCA	TCGA-C8-A1HG	C7orf41	SNP	Silent	7	30197080	C	T	19	47
BRCA	TCGA-C8-A1HG	EGFR	SNP	Missense_Mutation	7	55259482	C	A	17	84
BRCA	TCGA-C8-A1HG	SEMA3D	SNP	Nonsense_Mutation	7	84649620	T	A	63	92
BRCA	TCGA-C8-A1HG	RAB11FIP1	SNP	Silent	8	37720512	C	T	21	77
BRCA	TCGA-C8-A1HG	FBXO25	SNP	Missense_Mutation	8	413124	C	T	31	58
BRCA	TCGA-C8-A1HG	TOX	SNP	Silent	8	59852038	G	A	41	50
BRCA	TCGA-C8-A1HG	ALDOB	SNP	Missense_Mutation	9	104193120	G	A	45	86
BRCA	TCGA-C8-A1HG	TNC	SNP	Missense_Mutation	9	117840365	C	A	30	73
BRCA	TCGA-C8-A1HG	DENND1A	DEL	In_Frame_Del	9	126429352	AAG	-	13	74
BRCA	TCGA-C8-A1HG	DNM1	SNP	Missense_Mutation	9	130996358	G	A	39	99
BRCA	TCGA-C8-A1HG	ALDH1A1	SNP	Silent	9	75540487	A	C	7	50
BRCA	TCGA-C8-A1HG	FAM75C1	SNP	Silent	9	90537720	G	A	41	55
BRCA	TCGA-C8-A1HI	DUSP10	SNP	Missense_Mutation	1	221912365	T	C	52	62
BRCA	TCGA-C8-A1HI	TMEM59	SNP	Silent	1	54509100	G	C	35	62
BRCA	TCGA-C8-A1HI	TCF7L2	SNP	Missense_Mutation	10	114910812	C	T	25	96
BRCA	TCGA-C8-A1HI	CTNNA3	SNP	Missense_Mutation	10	68940116	G	A	37	84
BRCA	TCGA-C8-A1HI	GATA3	INS	Frame_Shift_Ins	10	8115952	-	C	6	76
BRCA	TCGA-C8-A1HI	MS4A4A	SNP	Missense_Mutation	11	60064763	G	A	40	49
BRCA	TCGA-C8-A1HI	PITPNM1	SNP	Silent	11	67261512	C	A	17	51
BRCA	TCGA-C8-A1HI	MTERFD3	SNP	Missense_Mutation	12	107371529	C	T	18	74
BRCA	TCGA-C8-A1HI	RBM19	SNP	Missense_Mutation	12	114296632	G	T	37	57
BRCA	TCGA-C8-A1HI	OXA1L	SNP	Silent	14	23239475	C	G	30	47
BRCA	TCGA-C8-A1HI	ACIN1	SNP	Silent	14	23530619	C	T	28	59
BRCA	TCGA-C8-A1HI	AHSA1	SNP	Missense_Mutation	14	77935581	C	T	19	77
BRCA	TCGA-C8-A1HI	FOXN3	SNP	Missense_Mutation	14	89878525	G	A	42	99
BRCA	TCGA-C8-A1HI	KIAA1024	SNP	Missense_Mutation	15	79749073	T	C	63	76
BRCA	TCGA-C8-A1HI	VPS33B	SNP	Missense_Mutation	15	91551102	G	C	33	74
BRCA	TCGA-C8-A1HI	XPO6	SNP	Missense_Mutation	16	28167638	C	T	23	84
BRCA	TCGA-C8-A1HI	IL32	SNP	Silent	16	3119287	C	T	19	31
BRCA	TCGA-C8-A1HI	KIF19	SNP	Silent	17	72350926	C	T	22	53
BRCA	TCGA-C8-A1HI	C17orf28	SNP	Silent	17	72952020	C	T	29	55
BRCA	TCGA-C8-A1HI	C17orf74	SNP	Splice_Site	17	7329370	G	C	36	69
BRCA	TCGA-C8-A1HI	MRPL38	SNP	Missense_Mutation	17	73898161	G	C	48	51
BRCA	TCGA-C8-A1HI	EMR2	SNP	Missense_Mutation	19	14863285	C	T	25	53
BRCA	TCGA-C8-A1HI	OR7A5	SNP	Missense_Mutation	19	14938267	C	A	25	53
BRCA	TCGA-C8-A1HI	CYP2S1	SNP	Missense_Mutation	19	41711922	C	A	18	49
BRCA	TCGA-C8-A1HI	KLK4	SNP	Missense_Mutation	19	51410279	C	A	28	43
BRCA	TCGA-C8-A1HI	NCKAP5	SNP	Silent	2	133539971	T	C	63	48
BRCA	TCGA-C8-A1HI	RAPGEF4	SNP	Silent	2	173825508	C	T	19	73
BRCA	TCGA-C8-A1HI	CNGA3	SNP	Missense_Mutation	2	99013403	G	T	36	45
BRCA	TCGA-C8-A1HI	DEFB129	DEL	In_Frame_Del	20	210400	AGA	-	7	47
BRCA	TCGA-C8-A1HI	HCFC1	SNP	Missense_Mutation	23	153215007	T	C	62	86
BRCA	TCGA-C8-A1HI	C3orf22	SNP	Missense_Mutation	3	126268811	C	T	27	65
BRCA	TCGA-C8-A1HI	IL20RB	SNP	Splice_Site	3	136699172	G	A	35	50
BRCA	TCGA-C8-A1HI	TMA16	SNP	Missense_Mutation	4	164428259	A	T	1	51
BRCA	TCGA-C8-A1HI	CYB5R4	SNP	Missense_Mutation	6	84644368	C	T	19	87
BRCA	TCGA-C8-A1HI	SERPINE1	SNP	Splice_Site	7	100777176	T	C	57	84
BRCA	TCGA-C8-A1HI	AASS	SNP	Missense_Mutation	7	121741712	G	A	35	90
BRCA	TCGA-C8-A1HI	LMTK2	SNP	Silent	7	97823713	C	T	19	43
BRCA	TCGA-C8-A1HI	TMEM246	SNP	Missense_Mutation	9	104238875	C	T	27	80
BRCA	TCGA-C8-A1HJ	CLCN6	SNP	Missense_Mutation	1	11898845	T	G	53	40
BRCA	TCGA-C8-A1HJ	ADAM30	SNP	Missense_Mutation	1	120436760	C	T	32	50
BRCA	TCGA-C8-A1HJ	CRNN	SNP	Missense_Mutation	1	152382842	G	T	44	55
BRCA	TCGA-C8-A1HJ	UBQLN4	SNP	Missense_Mutation	1	156018375	C	G	29	90
BRCA	TCGA-C8-A1HJ	APOA1BP	SNP	Silent	1	156562240	G	C	47	72
BRCA	TCGA-C8-A1HJ	CRP	SNP	Missense_Mutation	1	159683842	C	A	28	55
BRCA	TCGA-C8-A1HJ	UAP1	SNP	Silent	1	162560143	A	G	3	64
BRCA	TCGA-C8-A1HJ	NCF2	DEL	Frame_Shift_Del	1	183525283	TG	-	55	56
BRCA	TCGA-C8-A1HJ	LRRN2	DEL	In_Frame_Del	1	204588018	CCGTGGAGA	-	26	86
BRCA	TCGA-C8-A1HJ	USH2A	SNP	Missense_Mutation	1	216173838	C	G	20	88
BRCA	TCGA-C8-A1HJ	ESRRG	SNP	Missense_Mutation	1	216850481	C	A	21	100
BRCA	TCGA-C8-A1HJ	OBSCN	SNP	Silent	1	228464918	A	C	7	52
BRCA	TCGA-C8-A1HJ	KIF26B	SNP	Missense_Mutation	1	245766051	C	T	26	87
BRCA	TCGA-C8-A1HJ	OR2T2	DEL	In_Frame_Del	1	248616708	TGCGTG	-	55	52
BRCA	TCGA-C8-A1HJ	ARHGEF16	SNP	Missense_Mutation	1	3397018	T	C	54	56
BRCA	TCGA-C8-A1HJ	PABPC4	SNP	Missense_Mutation	1	40030439	C	T	22	84
BRCA	TCGA-C8-A1HJ	HOOK1	SNP	Missense_Mutation	1	60294515	G	C	41	64
BRCA	TCGA-C8-A1HJ	FAM160B1	SNP	Missense_Mutation	10	116595973	C	G	17	86
BRCA	TCGA-C8-A1HJ	CHAT	SNP	Silent	10	50863479	T	G	55	17
BRCA	TCGA-C8-A1HJ	HK1	SNP	Silent	10	71144575	C	T	25	58
BRCA	TCGA-C8-A1HJ	SFMBT2	SNP	Missense_Mutation	10	7290590	G	C	47	85
BRCA	TCGA-C8-A1HJ	IFIT1	DEL	In_Frame_Del	10	91162494	AAA	-	9	59
BRCA	TCGA-C8-A1HJ	ZFYVE27	SNP	Missense_Mutation	10	99508101	G	C	33	58
BRCA	TCGA-C8-A1HJ	MUC2	SNP	Missense_Mutation	11	1086332	A	T	11	52
BRCA	TCGA-C8-A1HJ	KCNJ5	SNP	Missense_Mutation	11	128781958	G	A	43	100
BRCA	TCGA-C8-A1HJ	BRSK2	SNP	Missense_Mutation	11	1459590	C	A	28	66
BRCA	TCGA-C8-A1HJ	CD44	DEL	Frame_Shift_Del	11	35229691	CAAATCCA	-	25	57
BRCA	TCGA-C8-A1HJ	LRRC4C	SNP	Missense_Mutation	11	40137802	A	G	16	76
BRCA	TCGA-C8-A1HJ	OR4C15	SNP	Silent	11	55321992	A	G	6	38
BRCA	TCGA-C8-A1HJ	SCGB2A1	SNP	Missense_Mutation	11	61977971	G	C	33	45
BRCA	TCGA-C8-A1HJ	ZBTB3	SNP	Missense_Mutation	11	62520833	C	G	28	94
BRCA	TCGA-C8-A1HJ	RBMXL2	SNP	Silent	11	7110465	C	G	30	45
BRCA	TCGA-C8-A1HJ	FAT3	SNP	Missense_Mutation	11	92577795	G	C	34	66
BRCA	TCGA-C8-A1HJ	CCDC82	SNP	Missense_Mutation	11	96104224	G	C	37	83
BRCA	TCGA-C8-A1HJ	RPLP0	SNP	Silent	12	120634624	T	C	56	52
BRCA	TCGA-C8-A1HJ	KIAA1467	SNP	Silent	12	13208585	G	T	43	49
BRCA	TCGA-C8-A1HJ	WBP11	SNP	Missense_Mutation	12	14946765	A	C	7	60
BRCA	TCGA-C8-A1HJ	PROZ	SNP	Nonsense_Mutation	13	113826030	C	T	21	55
BRCA	TCGA-C8-A1HJ	LAMP1	SNP	Missense_Mutation	13	113965104	C	A	21	51
BRCA	TCGA-C8-A1HJ	COG3	SNP	Missense_Mutation	13	46103952	G	A	46	75
BRCA	TCGA-C8-A1HJ	RNF219	SNP	Missense_Mutation	13	79213121	T	A	50	60
BRCA	TCGA-C8-A1HJ	IGHG3	SNP	Silent	14	106237463	A	T	6	65
BRCA	TCGA-C8-A1HJ	RPS6KL1	SNP	Silent	14	75376355	C	T	28	49
BRCA	TCGA-C8-A1HJ	AQR	SNP	Missense_Mutation	15	35202492	C	T	20	81
BRCA	TCGA-C8-A1HJ	CGNL1	SNP	Silent	15	57816868	C	G	31	45
BRCA	TCGA-C8-A1HJ	OTOA	SNP	Missense_Mutation	16	21728342	A	G	9	66
BRCA	TCGA-C8-A1HJ	RRN3P1	SNP	Splice_Site	16	21813956	C	G	18	64
BRCA	TCGA-C8-A1HJ	HS3ST4	SNP	Missense_Mutation	16	26147267	G	C	47	99
BRCA	TCGA-C8-A1HJ	ITGAM	SNP	Missense_Mutation	16	31282343	T	C	56	81
BRCA	TCGA-C8-A1HJ	FOXN1	SNP	Missense_Mutation	17	26862056	G	C	35	93
BRCA	TCGA-C8-A1HJ	SPPL2C	SNP	Silent	17	43924168	C	G	21	57
BRCA	TCGA-C8-A1HJ	ACSF2	DEL	Splice_Site	17	48540911	GAGG	-	33	58
BRCA	TCGA-C8-A1HJ	CYB561	SNP	Missense_Mutation	17	61511891	A	T	7	42
BRCA	TCGA-C8-A1HJ	TP53	SNP	Nonsense_Mutation	17	7578263	G	A	39	67
BRCA	TCGA-C8-A1HJ	ALOX15B	SNP	Silent	17	7951170	T	C	55	37
BRCA	TCGA-C8-A1HJ	NPLOC4	SNP	Silent	17	79526293	T	G	55	68
BRCA	TCGA-C8-A1HJ	CEP192	SNP	Missense_Mutation	18	13057640	G	A	38	81
BRCA	TCGA-C8-A1HJ	ATG4D	SNP	Missense_Mutation	19	10659646	T	G	58	90
BRCA	TCGA-C8-A1HJ	ASF1B	SNP	Missense_Mutation	19	14247177	C	G	20	42
BRCA	TCGA-C8-A1HJ	PKN1	SNP	Silent	19	14551135	G	A	34	62
BRCA	TCGA-C8-A1HJ	ZNF66P	SNP	Missense_Mutation	19	20989623	T	G	64	73
BRCA	TCGA-C8-A1HJ	ZNF607	SNP	Missense_Mutation	19	38189435	A	T	3	67
BRCA	TCGA-C8-A1HJ	SRRM5	SNP	Missense_Mutation	19	44116613	C	T	27	51
BRCA	TCGA-C8-A1HJ	CARD8	SNP	Missense_Mutation	19	48715054	T	A	56	60
BRCA	TCGA-C8-A1HJ	ZNF544	SNP	Missense_Mutation	19	58758105	C	G	32	66
BRCA	TCGA-C8-A1HJ	EMR1	SNP	Missense_Mutation	19	6926467	A	G	12	78
BRCA	TCGA-C8-A1HJ	TTN	SNP	Missense_Mutation	2	179583460	G	A	34	100
BRCA	TCGA-C8-A1HJ	C20orf26	SNP	Silent	20	20278908	C	A	29	61
BRCA	TCGA-C8-A1HJ	IDH3B	SNP	Missense_Mutation	20	2644347	C	A	17	82
BRCA	TCGA-C8-A1HJ	ATRN	SNP	Missense_Mutation	20	3553410	T	C	54	93
BRCA	TCGA-C8-A1HJ	RUNX1	SNP	Missense_Mutation	21	36231819	A	G	15	87
BRCA	TCGA-C8-A1HJ	TSSK2	SNP	Silent	22	19119536	C	T	29	66
BRCA	TCGA-C8-A1HJ	LZTR1	SNP	Splice_Site	22	21348559	G	A	44	81
BRCA	TCGA-C8-A1HJ	LZTR1	SNP	Silent	22	21351303	G	T	42	62
BRCA	TCGA-C8-A1HJ	NCAPH2	SNP	Missense_Mutation	22	50957642	C	T	26	55
BRCA	TCGA-C8-A1HJ	SAGE1	SNP	Missense_Mutation	23	134988615	T	C	58	50
BRCA	TCGA-C8-A1HJ	ATP2B3	SNP	Missense_Mutation	23	152808551	G	A	40	65
BRCA	TCGA-C8-A1HJ	RAI2	SNP	Missense_Mutation	23	17818732	A	T	11	86
BRCA	TCGA-C8-A1HJ	SLC38A5	SNP	Missense_Mutation	23	48326122	C	A	22	61
BRCA	TCGA-C8-A1HJ	FAM86JP	SNP	Splice_Site	3	125647336	A	G	7	62
BRCA	TCGA-C8-A1HJ	DZIP1L	SNP	Missense_Mutation	3	137781680	T	A	63	50
BRCA	TCGA-C8-A1HJ	ATR	SNP	Missense_Mutation	3	142285029	T	G	51	82
BRCA	TCGA-C8-A1HJ	SPATA16	SNP	Missense_Mutation	3	172607409	C	T	31	70
BRCA	TCGA-C8-A1HJ	CDCP1	SNP	Missense_Mutation	3	45159927	A	G	10	67
BRCA	TCGA-C8-A1HJ	ITIH1	SNP	Missense_Mutation	3	52814374	C	G	29	60
BRCA	TCGA-C8-A1HJ	GRIA2	SNP	Missense_Mutation	4	158233956	C	A	32	69
BRCA	TCGA-C8-A1HJ	CATSPER3	SNP	Missense_Mutation	5	134346079	C	T	17	49
BRCA	TCGA-C8-A1HJ	GPR151	SNP	Missense_Mutation	5	145895299	G	T	42	56
BRCA	TCGA-C8-A1HJ	CYFIP2	SNP	Missense_Mutation	5	156752564	C	G	19	74
BRCA	TCGA-C8-A1HJ	RUFY1	SNP	Missense_Mutation	5	178994482	G	A	37	99
BRCA	TCGA-C8-A1HJ	CDK19	SNP	Splice_site	6	110943369	A	C	6	70
BRCA	TCGA-C8-A1HJ	REV3L	SNP	Missense_Mutation	6	111695002	G	A	46	75
BRCA	TCGA-C8-A1HJ	CCDC170	SNP	Silent	6	151939084	G	C	47	70
BRCA	TCGA-C8-A1HJ	PACRG	SNP	Silent	6	163483345	C	T	23	95
BRCA	TCGA-C8-A1HJ	C6orf118	SNP	Missense_Mutation	6	165715464	G	A	40	67
BRCA	TCGA-C8-A1HJ	RPS6KA2	SNP	Missense_Mutation	6	166833389	A	C	2	47
BRCA	TCGA-C8-A1HJ	SYNGAP1	SNP	Missense_Mutation	6	33409034	G	C	33	81
BRCA	TCGA-C8-A1HJ	CPNE5	SNP	Missense_Mutation	6	36710197	G	C	39	68
BRCA	TCGA-C8-A1HJ	FGD2	SNP	Missense_Mutation	6	36982782	C	T	23	72
BRCA	TCGA-C8-A1HJ	ENPP5	SNP	Silent	6	46135385	C	A	26	49
BRCA	TCGA-C8-A1HJ	RCAN2	SNP	Missense_Mutation	6	46216493	G	C	45	97
BRCA	TCGA-C8-A1HJ	TMEM209	SNP	Missense_Mutation	7	129841839	A	T	13	86
BRCA	TCGA-C8-A1HJ	PKHD1L1	SNP	Missense_Mutation	8	110457789	T	G	63	44
BRCA	TCGA-C8-A1HJ	PKHD1L1	SNP	Missense_Mutation	8	110509244	T	A	56	54
BRCA	TCGA-C8-A1HJ	ENPP2	SNP	Missense_Mutation	8	120596251	C	A	25	98
BRCA	TCGA-C8-A1HJ	FAM83A	SNP	Silent	8	124195570	T	G	53	68
BRCA	TCGA-C8-A1HJ	GSDMC	SNP	Missense_Mutation	8	130760832	C	A	24	49
BRCA	TCGA-C8-A1HJ	WDR34	SNP	Missense_Mutation	9	131398586	T	C	59	88
BRCA	TCGA-C8-A1HK	GON4L	SNP	Missense_Mutation	1	155733322	C	T	29	93
BRCA	TCGA-C8-A1HK	CDK11A	SNP	Missense_Mutation	1	1635354	C	A	21	86
BRCA	TCGA-C8-A1HK	OBSCN	SNP	Silent	1	228451893	G	C	45	67
BRCA	TCGA-C8-A1HK	KIAA1522	SNP	Missense_Mutation	1	33238473	G	C	33	65
BRCA	TCGA-C8-A1HK	BCL10	SNP	Missense_Mutation	1	85736385	G	C	38	53
BRCA	TCGA-C8-A1HK	TAF5	SNP	Missense_Mutation	10	105145226	G	A	43	84
BRCA	TCGA-C8-A1HK	O3FAR1	SNP	Missense_Mutation	10	95347070	C	T	23	89
BRCA	TCGA-C8-A1HK	OR4C11	SNP	Silent	11	55371451	G	A	45	55
BRCA	TCGA-C8-A1HK	OR5L1	SNP	Silent	11	55579182	A	G	1	40
BRCA	TCGA-C8-A1HK	OR5AN1	SNP	Missense_Mutation	11	59132707	T	C	58	74
BRCA	TCGA-C8-A1HK	AHNAK	SNP	Missense_Mutation	11	62298678	C	T	32	80
BRCA	TCGA-C8-A1HK	TAS2R10	SNP	Missense_Mutation	12	10978187	C	A	20	49
BRCA	TCGA-C8-A1HK	MLL2	SNP	Missense_Mutation	12	49437197	C	G	32	68
BRCA	TCGA-C8-A1HK	KRT78	SNP	Missense_Mutation	12	53233561	C	T	22	65
BRCA	TCGA-C8-A1HK	TMCC3	DEL	Frame_Shift_Del	12	94976125	CG	-	31	88
BRCA	TCGA-C8-A1HK	SLC10A2	SNP	Missense_Mutation	13	103701791	C	T	31	100
BRCA	TCGA-C8-A1HK	HECTD1	SNP	Silent	14	31574620	C	T	23	48
BRCA	TCGA-C8-A1HK	SYNE2	SNP	Missense_Mutation	14	64608677	G	T	46	63
BRCA	TCGA-C8-A1HK	CCNF	SNP	Missense_Mutation	16	2493715	G	C	33	54
BRCA	TCGA-C8-A1HK	GSG1L	SNP	Missense_Mutation	16	27974518	T	A	64	38
BRCA	TCGA-C8-A1HK	GNAO1	SNP	Missense_Mutation	16	56388909	G	A	37	100
BRCA	TCGA-C8-A1HK	PLCG2	SNP	Missense_Mutation	16	81971437	A	G	8	89
BRCA	TCGA-C8-A1HK	COG1	SNP	Missense_Mutation	17	71193052	C	G	25	69
BRCA	TCGA-C8-A1HK	TP53	SNP	Nonsense_Mutation	17	7577100	T	A	54	64
BRCA	TCGA-C8-A1HK	DNAH17	SNP	Splice_Site	17	76567116	C	G	24	79
BRCA	TCGA-C8-A1HK	KIRREL2	SNP	Silent	19	36351484	C	T	19	51
BRCA	TCGA-C8-A1HK	PEG3	SNP	Missense_Mutation	19	57325285	C	T	29	56
BRCA	TCGA-C8-A1HK	MBD5	SNP	Missense_Mutation	2	149247274	C	T	26	96
BRCA	TCGA-C8-A1HK	TTN	SNP	Silent	2	179479656	G	A	35	55
BRCA	TCGA-C8-A1HK	SMARCAL1	SNP	Missense_Mutation	2	217279872	C	G	29	52
BRCA	TCGA-C8-A1HK	SMARCAL1	SNP	Missense_Mutation	2	217279969	C	G	32	52
BRCA	TCGA-C8-A1HK	HEATR5B	SNP	Missense_Mutation	2	37229509	G	A	37	94
BRCA	TCGA-C8-A1HK	SRBD1	SNP	Missense_Mutation	2	45773940	C	G	24	95
BRCA	TCGA-C8-A1HK	WDPCP	SNP	Missense_Mutation	2	63605609	G	T	41	94
BRCA	TCGA-C8-A1HK	CPXM1	SNP	Missense_Mutation	20	2777256	C	T	27	96
BRCA	TCGA-C8-A1HK	FAM65C	SNP	Missense_Mutation	20	49236628	G	T	46	50
BRCA	TCGA-C8-A1HK	CTAG2	SNP	Silent	23	153881598	C	T	27	52
BRCA	TCGA-C8-A1HK	PHKA2	SNP	Missense_Mutation	23	18949833	C	A	32	98
BRCA	TCGA-C8-A1HK	PHF8	SNP	Missense_Mutation	23	54026388	C	T	31	97
BRCA	TCGA-C8-A1HK	C3orf20	SNP	Missense_Mutation	3	14803016	G	A	48	57
BRCA	TCGA-C8-A1HK	PLD1	SNP	Missense_Mutation	3	171417579	C	G	29	98
BRCA	TCGA-C8-A1HK	TTLL3	SNP	Silent	3	9876579	G	A	45	60
BRCA	TCGA-C8-A1HK	N4BP2	SNP	Missense_Mutation	4	40122051	T	C	50	58
BRCA	TCGA-C8-A1HK	ATP10D	SNP	Missense_Mutation	4	47514627	G	T	45	52
BRCA	TCGA-C8-A1HK	UGT2B28	SNP	Missense_Mutation	4	70146552	G	C	33	31
BRCA	TCGA-C8-A1HK	ENAM	SNP	Silent	4	71508643	T	C	52	54
BRCA	TCGA-C8-A1HK	PAM	SNP	Splice_site	5	102353039	A	G	6	55
BRCA	TCGA-C8-A1HK	BASP1	SNP	Missense_Mutation	5	17275866	C	A	22	50
BRCA	TCGA-C8-A1HK	CDK19	SNP	Missense_Mutation	6	110944513	C	G	29	99
BRCA	TCGA-C8-A1HK	MTHFD1L	SNP	Missense_Mutation	6	151208992	G	T	33	59
BRCA	TCGA-C8-A1HK	IGF2R	DEL	Frame_Shift_Del	6	160510276	TT	-	52	86
BRCA	TCGA-C8-A1HK	INTS1	SNP	Silent	7	1529306	C	T	31	41
BRCA	TCGA-C8-A1HK	DDX56	SNP	Missense_Mutation	7	44612192	C	G	32	92
BRCA	TCGA-C8-A1HL	SPAG17	SNP	Missense_Mutation	1	118693979	G	A	42	52
BRCA	TCGA-C8-A1HL	EPHA2	SNP	Silent	1	16458583	G	A	44	80
BRCA	TCGA-C8-A1HL	IRF6	SNP	Missense_Mutation	1	209969822	G	T	38	68
BRCA	TCGA-C8-A1HL	GREM2	SNP	Missense_Mutation	1	240656415	C	T	27	66
BRCA	TCGA-C8-A1HL	ARID1A	DEL	Frame_Shift_Del	1	27087893	GGCCACCCAG	-	39	97
BRCA	TCGA-C8-A1HL	SEMA4G	SNP	Missense_Mutation	10	102743085	C	T	23	93
BRCA	TCGA-C8-A1HL	NOLC1	SNP	Missense_Mutation	10	103920683	C	T	30	85
BRCA	TCGA-C8-A1HL	GATA3	DEL	Frame_Shift_Del	10	8115872	C	-	32	47
BRCA	TCGA-C8-A1HL	GATA3	DEL	Frame_Shift_Del	10	8115874	C	-	31	85
BRCA	TCGA-C8-A1HL	CDHR1	SNP	Missense_Mutation	10	85973973	C	T	27	84
BRCA	TCGA-C8-A1HL	CDHR5	SNP	Silent	11	624855	C	T	25	63
BRCA	TCGA-C8-A1HL	PELI3	SNP	Nonsense_Mutation	11	66236347	G	T	41	61
BRCA	TCGA-C8-A1HL	DDX51	SNP	Splice_Site	12	132626394	C	G	19	64
BRCA	TCGA-C8-A1HL	ABCC4	SNP	Missense_Mutation	13	95696530	C	T	17	99
BRCA	TCGA-C8-A1HL	SPTB	SNP	Missense_Mutation	14	65237718	G	A	38	83
BRCA	TCGA-C8-A1HL	LRRC28	SNP	Missense_Mutation	15	99874160	G	T	33	96
BRCA	TCGA-C8-A1HL	SPAG5	SNP	Missense_Mutation	17	26920013	G	T	45	64
BRCA	TCGA-C8-A1HL	PLEKHM1	SNP	Silent	17	43545835	G	A	35	56
BRCA	TCGA-C8-A1HL	DNAH2	SNP	Missense_Mutation	17	7664159	C	T	23	58
BRCA	TCGA-C8-A1HL	ASXL3	SNP	Missense_Mutation	18	31326084	G	T	34	72
BRCA	TCGA-C8-A1HL	LOC100287226	SNP	Missense_Mutation	19	22497906	A	G	13	53
BRCA	TCGA-C8-A1HL	KLK4	SNP	Silent	19	51411758	C	T	19	49
BRCA	TCGA-C8-A1HL	VSTM1	SNP	Missense_Mutation	19	54545202	C	G	28	57
BRCA	TCGA-C8-A1HL	NLRP8	SNP	Silent	19	56490781	C	A	24	51
BRCA	TCGA-C8-A1HL	NT5C1B	SNP	Missense_Mutation	2	18766032	G	A	43	33
BRCA	TCGA-C8-A1HL	SIRPB1	SNP	Missense_Mutation	20	1559046	C	T	23	41
BRCA	TCGA-C8-A1HL	DEFB118	SNP	Missense_Mutation	20	29960765	G	T	46	70
BRCA	TCGA-C8-A1HL	GLA	SNP	Missense_Mutation	23	100658816	G	A	37	60
BRCA	TCGA-C8-A1HL	BRS3	SNP	Missense_Mutation	23	135574243	C	A	18	50
BRCA	TCGA-C8-A1HL	ADAMTS16	SNP	Silent	5	5237179	T	C	49	63
BRCA	TCGA-C8-A1HL	PDE4D	SNP	Missense_Mutation	5	58285743	G	A	40	80
BRCA	TCGA-C8-A1HL	MCM7	SNP	Missense_Mutation	7	99696921	C	T	25	53
BRCA	TCGA-C8-A1HL	NUP214	SNP	Missense_Mutation	9	134072801	C	T	32	75
BRCA	TCGA-C8-A1HL	TRPM3	SNP	Nonsense_Mutation	9	73151247	G	T	42	53
BRCA	TCGA-C8-A1HM	PTPN22	SNP	Missense_Mutation	1	114380359	C	G	29	54
BRCA	TCGA-C8-A1HM	AP4B1	SNP	Missense_Mutation	1	114445417	C	G	32	96
BRCA	TCGA-C8-A1HM	ATP1A1	SNP	Missense_Mutation	1	116941293	G	T	45	59
BRCA	TCGA-C8-A1HM	RPS27	SNP	Missense_Mutation	1	153963702	G	C	45	52
BRCA	TCGA-C8-A1HM	NES	SNP	Missense_Mutation	1	156639318	C	A	29	50
BRCA	TCGA-C8-A1HM	NES	SNP	Missense_Mutation	1	156641606	C	G	29	54
BRCA	TCGA-C8-A1HM	OR6P1	SNP	Silent	1	158532579	C	T	32	51
BRCA	TCGA-C8-A1HM	OR10J3	SNP	Missense_Mutation	1	159283656	G	C	41	75
BRCA	TCGA-C8-A1HM	SLC9C2	SNP	Silent	1	173493933	G	A	45	50
BRCA	TCGA-C8-A1HM	PADI3	SNP	Missense_Mutation	1	17599840	G	C	33	69
BRCA	TCGA-C8-A1HM	SHCBP1L	SNP	Missense_Mutation	1	182898837	C	G	32	81
BRCA	TCGA-C8-A1HM	LAMC1	SNP	Silent	1	183097764	G	A	33	62
BRCA	TCGA-C8-A1HM	PLA2G4A	SNP	Missense_Mutation	1	186908212	G	T	45	100
BRCA	TCGA-C8-A1HM	PLA2G4A	SNP	Missense_Mutation	1	186925342	G	C	33	96
BRCA	TCGA-C8-A1HM	KCNT2	SNP	Nonsense_Mutation	1	196397237	G	A	47	100
BRCA	TCGA-C8-A1HM	ASPM	SNP	Silent	1	197073413	G	C	45	50
BRCA	TCGA-C8-A1HM	ZNF281	SNP	Missense_Mutation	1	200377516	C	G	32	98
BRCA	TCGA-C8-A1HM	RAB3GAP2	SNP	Missense_Mutation	1	220330691	G	C	41	60
BRCA	TCGA-C8-A1HM	FBXO28	SNP	Missense_Mutation	1	224301869	G	A	41	67
BRCA	TCGA-C8-A1HM	PARP1	SNP	Silent	1	226568860	C	T	30	58
BRCA	TCGA-C8-A1HM	C1orf95	SNP	Silent	1	226736785	C	G	29	59
BRCA	TCGA-C8-A1HM	SDCCAG8	SNP	Missense_Mutation	1	243449584	C	G	32	67
BRCA	TCGA-C8-A1HM	PANK4	SNP	Missense_Mutation	1	2447048	G	T	33	56
BRCA	TCGA-C8-A1HM	AHCTF1	SNP	Missense_Mutation	1	247067320	C	G	29	55
BRCA	TCGA-C8-A1HM	OR2M4	SNP	Silent	1	248402510	C	T	32	52
BRCA	TCGA-C8-A1HM	EIF2C3	SNP	Missense_Mutation	1	36479639	G	C	33	100
BRCA	TCGA-C8-A1HM	ERMAP	SNP	Missense_Mutation	1	43305956	G	A	39	55
BRCA	TCGA-C8-A1HM	SLC2A1	SNP	Silent	1	43393372	G	A	33	51
BRCA	TCGA-C8-A1HM	BEND5	SNP	Missense_Mutation	1	49193689	C	G	32	96
BRCA	TCGA-C8-A1HM	RPE65	SNP	Nonsense_Mutation	1	68895512	C	A	29	100
BRCA	TCGA-C8-A1HM	ZRANB2	SNP	Missense_Mutation	1	71544146	C	A	17	97
BRCA	TCGA-C8-A1HM	GBP7	SNP	Missense_Mutation	1	89607275	G	C	41	49
BRCA	TCGA-C8-A1HM	ABCA4	SNP	Missense_Mutation	1	94486873	C	A	30	61
BRCA	TCGA-C8-A1HM	HPSE2	SNP	Silent	10	100374727	C	G	29	62
BRCA	TCGA-C8-A1HM	PDCD11	SNP	Nonsense_Mutation	10	105200072	G	T	33	53
BRCA	TCGA-C8-A1HM	ECHDC3	SNP	Missense_Mutation	10	11791544	G	C	41	67
BRCA	TCGA-C8-A1HM	HSPA14	SNP	Missense_Mutation	10	14891732	C	G	32	83
BRCA	TCGA-C8-A1HM	NEBL	SNP	Missense_Mutation	10	21186095	C	T	29	64
BRCA	TCGA-C8-A1HM	MTPAP	SNP	Missense_Mutation	10	30602867	G	C	33	54
BRCA	TCGA-C8-A1HM	KLF6	SNP	Missense_Mutation	10	3824269	C	G	32	62
BRCA	TCGA-C8-A1HM	SFTPD	SNP	Missense_Mutation	10	81706230	C	A	32	59
BRCA	TCGA-C8-A1HM	NRG3	SNP	Missense_Mutation	10	84738797	C	G	28	70
BRCA	TCGA-C8-A1HM	BLNK	SNP	Silent	10	97983711	G	A	45	70
BRCA	TCGA-C8-A1HM	PI4K2A	SNP	Missense_Mutation	10	99416641	G	A	45	100
BRCA	TCGA-C8-A1HM	EXPH5	SNP	Missense_Mutation	11	108384923	C	G	29	57
BRCA	TCGA-C8-A1HM	BCO2	SNP	Nonsense_Mutation	11	112086971	C	G	29	74
BRCA	TCGA-C8-A1HM	H2AFX	SNP	Silent	11	118965982	G	A	39	54
BRCA	TCGA-C8-A1HM	MICAL2	SNP	Missense_Mutation	11	12263947	C	T	27	66
BRCA	TCGA-C8-A1HM	BSX	SNP	Missense_Mutation	11	122850093	T	A	64	91
BRCA	TCGA-C8-A1HM	ETS1	SNP	Silent	11	128350168	G	A	35	63
BRCA	TCGA-C8-A1HM	OR4C16	SNP	Missense_Mutation	11	55340352	G	T	41	49
BRCA	TCGA-C8-A1HM	OR5M8	SNP	Silent	11	56258639	G	A	33	50
BRCA	TCGA-C8-A1HM	CTNND1	SNP	Missense_Mutation	11	57563948	C	G	20	85
BRCA	TCGA-C8-A1HM	OR52E4	SNP	Nonsense_Mutation	11	5905606	G	A	41	56
BRCA	TCGA-C8-A1HM	SCGB1D2	SNP	Silent	11	62009821	C	T	32	53
BRCA	TCGA-C8-A1HM	FERMT3	SNP	Missense_Mutation	11	63990956	G	T	42	84
BRCA	TCGA-C8-A1HM	MEN1	SNP	Silent	11	64577195	G	C	45	50
BRCA	TCGA-C8-A1HM	OR2D3	SNP	Missense_Mutation	11	6942948	C	A	30	51
BRCA	TCGA-C8-A1HM	PAK1	SNP	Missense_Mutation	11	77036380	C	G	29	51
BRCA	TCGA-C8-A1HM	ODZ4	SNP	Missense_Mutation	11	78380233	C	A	22	88
BRCA	TCGA-C8-A1HM	GPR83	SNP	Missense_Mutation	11	94134208	G	A	40	53
BRCA	TCGA-C8-A1HM	ZNF143	SNP	Missense_Mutation	11	9516249	G	C	33	56
BRCA	TCGA-C8-A1HM	HCFC2	SNP	Missense_Mutation	12	104461863	G	C	33	100
BRCA	TCGA-C8-A1HM	ANAPC7	SNP	Missense_Mutation	12	110815414	C	T	31	99
BRCA	TCGA-C8-A1HM	GCN1L1	SNP	Nonsense_Mutation	12	120575105	G	A	47	95
BRCA	TCGA-C8-A1HM	OASL	SNP	Missense_Mutation	12	121469412	G	T	33	43
BRCA	TCGA-C8-A1HM	TMEM120B	SNP	Splice_Site	12	122186349	G	A	44	90
BRCA	TCGA-C8-A1HM	VPS33A	SNP	Missense_Mutation	12	122723195	G	C	41	87
BRCA	TCGA-C8-A1HM	KNTC1	SNP	Nonsense_Mutation	12	123089155	G	T	45	79
BRCA	TCGA-C8-A1HM	SNRNP35	SNP	Nonsense_Mutation	12	123950359	C	G	29	97
BRCA	TCGA-C8-A1HM	SNRNP35	SNP	Silent	12	123950612	C	G	32	38
BRCA	TCGA-C8-A1HM	SLCO1B1	SNP	Nonsense_Mutation	12	21353576	C	T	29	58
BRCA	TCGA-C8-A1HM	SCAF11	SNP	Missense_Mutation	12	46320776	G	A	47	88
BRCA	TCGA-C8-A1HM	NDUFA9	SNP	Missense_Mutation	12	4796219	G	A	38	92
BRCA	TCGA-C8-A1HM	COL2A1	SNP	Splice_Site	12	48387775	A	T	14	88
BRCA	TCGA-C8-A1HM	MLL2	SNP	Missense_Mutation	12	49426957	C	A	18	66
BRCA	TCGA-C8-A1HM	SMARCC2	SNP	Missense_Mutation	12	56561849	C	T	32	94
BRCA	TCGA-C8-A1HM	LRP1	SNP	Nonsense_Mutation	12	57592378	G	T	45	73
BRCA	TCGA-C8-A1HM	GRIP1	SNP	Missense_Mutation	12	66742819	C	T	32	77
BRCA	TCGA-C8-A1HM	NUP107	SNP	Missense_Mutation	12	69103830	G	A	33	82
BRCA	TCGA-C8-A1HM	PTPN6	SNP	Missense_Mutation	12	7064127	C	T	29	67
BRCA	TCGA-C8-A1HM	CD163L1	SNP	Missense_Mutation	12	7550886	C	G	32	43
BRCA	TCGA-C8-A1HM	MCF2L	SNP	Silent	13	113719306	C	T	31	50
BRCA	TCGA-C8-A1HM	F7	SNP	Missense_Mutation	13	113772894	G	A	37	57
BRCA	TCGA-C8-A1HM	ATP8A2	SNP	Silent	13	26535727	G	C	45	63
BRCA	TCGA-C8-A1HM	AKAP11	SNP	Nonsense_Mutation	13	42882612	C	T	29	62
BRCA	TCGA-C8-A1HM	FARP1	SNP	Nonsense_Mutation	13	98865603	C	G	29	81
BRCA	TCGA-C8-A1HM	HSP90AA1	SNP	Missense_Mutation	14	102549629	C	G	24	60
BRCA	TCGA-C8-A1HM	OR4K1	SNP	Silent	14	20404299	C	T	26	36
BRCA	TCGA-C8-A1HM	TEP1	SNP	Silent	14	20856087	G	C	35	53
BRCA	TCGA-C8-A1HM	METTL17	SNP	Missense_Mutation	14	21464955	G	A	40	80
BRCA	TCGA-C8-A1HM	CHD8	SNP	Missense_Mutation	14	21867782	G	C	34	99
BRCA	TCGA-C8-A1HM	SNX6	SNP	Silent	14	35077312	G	A	45	100
BRCA	TCGA-C8-A1HM	COQ6	SNP	Missense_Mutation	14	74428017	C	A	32	56
BRCA	TCGA-C8-A1HM	PPP4R4	SNP	Splice_Site	14	94744955	G	C	33	80
BRCA	TCGA-C8-A1HM	TJP1	SNP	Missense_Mutation	15	30053811	C	G	32	59
BRCA	TCGA-C8-A1HM	SPRED1	SNP	Missense_Mutation	15	38614513	G	C	33	100
BRCA	TCGA-C8-A1HM	GALK2	SNP	Missense_Mutation	15	49509389	G	A	33	88
BRCA	TCGA-C8-A1HM	UNC13C	SNP	Nonsense_Mutation	15	54919234	C	T	29	100
BRCA	TCGA-C8-A1HM	MYO1E	SNP	Missense_Mutation	15	59515261	C	G	32	98
BRCA	TCGA-C8-A1HM	VPS13C	SNP	Missense_Mutation	15	62170937	C	G	29	55
BRCA	TCGA-C8-A1HM	VPS13C	SNP	Missense_Mutation	15	62204183	C	T	29	85
BRCA	TCGA-C8-A1HM	NEIL1	SNP	Missense_Mutation	15	75641571	C	T	23	61
BRCA	TCGA-C8-A1HM	HOMER2	SNP	Missense_Mutation	15	83518649	C	T	32	94
BRCA	TCGA-C8-A1HM	SLC28A1	SNP	Missense_Mutation	15	85431031	C	G	32	56
BRCA	TCGA-C8-A1HM	HAPLN3	SNP	Missense_Mutation	15	89424920	G	A	43	90
BRCA	TCGA-C8-A1HM	CIITA	SNP	Missense_Mutation	16	11009480	C	T	19	58
BRCA	TCGA-C8-A1HM	MKL2	SNP	Missense_Mutation	16	14334208	G	A	45	100
BRCA	TCGA-C8-A1HM	SYT17	SNP	Missense_Mutation	16	19191817	C	T	29	83
BRCA	TCGA-C8-A1HM	RPS2	SNP	Missense_Mutation	16	2014292	G	T	33	58
BRCA	TCGA-C8-A1HM	ACSM1	SNP	Silent	16	20636769	G	C	46	72
BRCA	TCGA-C8-A1HM	ENSG00000232055	SNP	Silent	16	2972988	G	A	33	53
BRCA	TCGA-C8-A1HM	CCDC64B	SNP	Missense_Mutation	16	3081079	C	T	19	74
BRCA	TCGA-C8-A1HM	NLRC5	SNP	Splice_site	16	57075485	G	A	37	70
BRCA	TCGA-C8-A1HM	FAM65A	SNP	Missense_Mutation	16	67577132	G	C	41	100
BRCA	TCGA-C8-A1HM	FAM65A	SNP	Missense_Mutation	16	67578233	G	A	41	98
BRCA	TCGA-C8-A1HM	CIRH1A	SNP	Missense_Mutation	16	69191112	C	G	29	54
BRCA	TCGA-C8-A1HM	PMFBP1	SNP	Missense_Mutation	16	72188209	C	G	32	55
BRCA	TCGA-C8-A1HM	ADAMTS18	SNP	Missense_Mutation	16	77375627	C	T	32	96
BRCA	TCGA-C8-A1HM	NARFL	SNP	Missense_Mutation	16	787197	C	G	32	50
BRCA	TCGA-C8-A1HM	MYH2	SNP	Silent	17	10435109	C	T	29	46
BRCA	TCGA-C8-A1HM	ADPRM	SNP	Missense_Mutation	17	10608733	G	C	45	97
BRCA	TCGA-C8-A1HM	DNAH9	SNP	Missense_Mutation	17	11543625	G	A	47	80
BRCA	TCGA-C8-A1HM	ELAC2	SNP	Silent	17	12897061	G	A	41	53
BRCA	TCGA-C8-A1HM	PRPF8	SNP	Missense_Mutation	17	1564924	C	G	32	100
BRCA	TCGA-C8-A1HM	LRRC48	SNP	Missense_Mutation	17	17910739	G	C	41	53
BRCA	TCGA-C8-A1HM	SMG6	SNP	Missense_Mutation	17	2203954	G	T	48	65
BRCA	TCGA-C8-A1HM	SLC13A2	SNP	Missense_Mutation	17	26824217	C	G	30	54
BRCA	TCGA-C8-A1HM	CISD3	SNP	Missense_Mutation	17	36887606	G	C	40	60
BRCA	TCGA-C8-A1HM	PLEKHM1	SNP	Missense_Mutation	17	43545712	C	G	32	56
BRCA	TCGA-C8-A1HM	NLRP1	SNP	Missense_Mutation	17	5418221	C	G	32	56
BRCA	TCGA-C8-A1HM	TRIM37	SNP	Missense_Mutation	17	57126636	G	C	33	56
BRCA	TCGA-C8-A1HM	FXR2	SNP	Missense_Mutation	17	7495896	C	T	19	88
BRCA	TCGA-C8-A1HM	SEC14L1	SNP	Missense_Mutation	17	75196587	C	G	32	76
BRCA	TCGA-C8-A1HM	TP53	SNP	Missense_Mutation	17	7578268	A	G	3	88
BRCA	TCGA-C8-A1HM	ARL16	SNP	Silent	17	79650736	C	G	29	58
BRCA	TCGA-C8-A1HM	HGS	SNP	Missense_Mutation	17	79661866	G	A	45	90
BRCA	TCGA-C8-A1HM	NEDD4L	SNP	Splice_Site	18	55833023	G	C	33	85
BRCA	TCGA-C8-A1HM	KANK2	SNP	Nonsense_Mutation	19	11287449	G	C	45	68
BRCA	TCGA-C8-A1HM	ZNF625	SNP	Missense_Mutation	19	12256762	G	A	45	77
BRCA	TCGA-C8-A1HM	FAM129C	SNP	Missense_Mutation	19	17660294	C	G	32	56
BRCA	TCGA-C8-A1HM	RAB3A	SNP	Splice_Site	19	18309660	C	G	24	95
BRCA	TCGA-C8-A1HM	ELL	SNP	Missense_Mutation	19	18562372	G	C	37	80
BRCA	TCGA-C8-A1HM	TMEM59L	SNP	Missense_Mutation	19	18729040	C	T	32	58
BRCA	TCGA-C8-A1HM	ZNF681	SNP	Silent	19	23937695	C	T	29	44
BRCA	TCGA-C8-A1HM	CEP89	SNP	Silent	19	33417111	G	C	45	43
BRCA	TCGA-C8-A1HM	NMRK2	SNP	Silent	19	3938653	G	A	45	50
BRCA	TCGA-C8-A1HM	AKT2	SNP	Missense_Mutation	19	40741906	C	T	31	98
BRCA	TCGA-C8-A1HM	PLD3	SNP	Missense_Mutation	19	40880424	C	G	30	74
BRCA	TCGA-C8-A1HM	ITPKC	SNP	Missense_Mutation	19	41224139	G	C	45	80
BRCA	TCGA-C8-A1HM	CA11	SNP	Silent	19	49143054	G	C	33	47
BRCA	TCGA-C8-A1HM	GYS1	SNP	Missense_Mutation	19	49494681	C	T	31	95
BRCA	TCGA-C8-A1HM	SIGLEC7	SNP	Missense_Mutation	19	51649334	C	T	30	63
BRCA	TCGA-C8-A1HM	SIGLEC5	SNP	Silent	19	52132711	G	A	45	54
BRCA	TCGA-C8-A1HM	LILRB3	SNP	Silent	19	54723032	G	C	41	47
BRCA	TCGA-C8-A1HM	CAPS	SNP	Silent	19	5914426	C	T	23	9
BRCA	TCGA-C8-A1HM	MUC16	SNP	Missense_Mutation	19	9059268	G	A	47	50
BRCA	TCGA-C8-A1HM	AFF3	SNP	Silent	2	100210557	C	T	32	46
BRCA	TCGA-C8-A1HM	CCDC138	SNP	Missense_Mutation	2	109404510	A	G	7	55
BRCA	TCGA-C8-A1HM	ZC3H6	SNP	Missense_Mutation	2	113089587	C	T	29	92
BRCA	TCGA-C8-A1HM	GTDC1	SNP	Missense_Mutation	2	144714895	C	G	32	73
BRCA	TCGA-C8-A1HM	FIGN	SNP	Missense_Mutation	2	164467534	G	A	41	100
BRCA	TCGA-C8-A1HM	LRP2	SNP	Missense_Mutation	2	169995097	G	A	45	84
BRCA	TCGA-C8-A1HM	UBR3	SNP	Missense_Mutation	2	170917689	G	C	48	62
BRCA	TCGA-C8-A1HM	DCAF17	SNP	Missense_Mutation	2	172314580	G	A	45	71
BRCA	TCGA-C8-A1HM	ITGA6	SNP	Missense_Mutation	2	173349861	G	A	33	98
BRCA	TCGA-C8-A1HM	PDK1	SNP	Missense_Mutation	2	173423483	G	C	33	100
BRCA	TCGA-C8-A1HM	TTN	SNP	Missense_Mutation	2	179441677	C	G	29	100
BRCA	TCGA-C8-A1HM	MYT1L	SNP	Missense_Mutation	2	1795704	G	C	45	100
BRCA	TCGA-C8-A1HM	TTN	SNP	Missense_Mutation	2	179605821	C	G	32	57
BRCA	TCGA-C8-A1HM	UNC80	SNP	Missense_Mutation	2	210680045	C	T	29	100
BRCA	TCGA-C8-A1HM	APOB	SNP	Missense_Mutation	2	21232398	G	C	45	66
BRCA	TCGA-C8-A1HM	OBSL1	SNP	Missense_Mutation	2	220416900	C	T	31	91
BRCA	TCGA-C8-A1HM	RBM44	SNP	Missense_Mutation	2	238725683	G	A	47	51
BRCA	TCGA-C8-A1HM	MAPRE3	SNP	Nonsense_Mutation	2	27248570	G	T	45	93
BRCA	TCGA-C8-A1HM	EFEMP1	SNP	Missense_Mutation	2	56094242	C	G	32	94
BRCA	TCGA-C8-A1HM	PCBP1	SNP	Missense_Mutation	2	70314894	G	C	45	80
BRCA	TCGA-C8-A1HM	ZNF638	DEL	Frame_Shift_Del	2	71651842	AGAGGTAAAAAAT	-	3	52
BRCA	TCGA-C8-A1HM	SIRPG	SNP	Missense_Mutation	20	1617003	C	G	32	53
BRCA	TCGA-C8-A1HM	ABHD12	SNP	Missense_Mutation	20	25281495	C	G	29	67
BRCA	TCGA-C8-A1HM	GDF5	SNP	Silent	20	34025184	C	T	27	46
BRCA	TCGA-C8-A1HM	C20orf173	SNP	Splice_site	20	34116530	C	T	24	75
BRCA	TCGA-C8-A1HM	NDRG3	SNP	Missense_Mutation	20	35284799	C	T	31	93
BRCA	TCGA-C8-A1HM	ZNF334	SNP	Missense_Mutation	20	45132914	G	C	45	51
BRCA	TCGA-C8-A1HM	NFATC2	SNP	Silent	20	50090599	C	G	29	62
BRCA	TCGA-C8-A1HM	KRTAP26-1	SNP	Silent	21	31692282	G	C	45	41
BRCA	TCGA-C8-A1HM	DNAJC28	SNP	Missense_Mutation	21	34861131	C	G	32	51
BRCA	TCGA-C8-A1HM	DSCAM	SNP	Silent	21	42064818	G	C	33	66
BRCA	TCGA-C8-A1HM	UMODL1	SNP	Silent	21	43505408	G	A	33	56
BRCA	TCGA-C8-A1HM	DRG1	SNP	Missense_Mutation	22	31819322	G	C	33	54
BRCA	TCGA-C8-A1HM	XRCC6	SNP	Missense_Mutation	22	42032677	G	C	33	88
BRCA	TCGA-C8-A1HM	GPRASP1	SNP	Missense_Mutation	23	101910384	G	C	33	62
BRCA	TCGA-C8-A1HM	COL4A6	SNP	Silent	23	107436904	C	T	25	53
BRCA	TCGA-C8-A1HM	AGTR2	SNP	Silent	23	115304469	C	T	27	56
BRCA	TCGA-C8-A1HM	GLUD2	SNP	Silent	23	120182613	C	T	32	51
BRCA	TCGA-C8-A1HM	GRIA3	SNP	Nonsense_Mutation	23	122561910	G	T	33	97
BRCA	TCGA-C8-A1HM	IRAK1	SNP	Missense_Mutation	23	153278076	T	C	51	77
BRCA	TCGA-C8-A1HM	ACE2	SNP	Silent	23	15618933	G	A	40	35
BRCA	TCGA-C8-A1HM	DCAF8L2	SNP	Silent	23	27765804	G	A	45	52
BRCA	TCGA-C8-A1HM	DMD	SNP	Missense_Mutation	23	32429984	T	C	55	81
BRCA	TCGA-C8-A1HM	FAM47C	SNP	Missense_Mutation	23	37028630	C	T	27	49
BRCA	TCGA-C8-A1HM	PAGE2	SNP	Missense_Mutation	23	55117845	G	A	41	45
BRCA	TCGA-C8-A1HM	RETNLB	SNP	Missense_Mutation	3	108475375	C	G	32	38
BRCA	TCGA-C8-A1HM	CCDC80	SNP	Missense_Mutation	3	112357123	C	G	29	70
BRCA	TCGA-C8-A1HM	TOPBP1	SNP	Silent	3	133372333	G	T	48	75
BRCA	TCGA-C8-A1HM	PLSCR2	SNP	Missense_Mutation	3	146173028	C	T	30	55
BRCA	TCGA-C8-A1HM	PPM1L	SNP	Missense_Mutation	3	160786638	G	A	41	94
BRCA	TCGA-C8-A1HM	SERPINI2	SNP	Missense_Mutation	3	167184951	G	C	33	72
BRCA	TCGA-C8-A1HM	PHC3	SNP	Missense_Mutation	3	169847313	G	C	33	84
BRCA	TCGA-C8-A1HM	YEATS2	SNP	Missense_Mutation	3	183508603	G	T	40	43
BRCA	TCGA-C8-A1HM	TBCCD1	SNP	Silent	3	186272078	G	A	33	50
BRCA	TCGA-C8-A1HM	IL5RA	SNP	Missense_Mutation	3	3137081	G	A	37	43
BRCA	TCGA-C8-A1HM	ZNF35	SNP	Missense_Mutation	3	44692688	C	G	29	61
BRCA	TCGA-C8-A1HM	SMARCC1	SNP	Missense_Mutation	3	47719698	C	A	25	99
BRCA	TCGA-C8-A1HM	DNAH1	SNP	Missense_Mutation	3	52430733	G	C	45	97
BRCA	TCGA-C8-A1HM	C4orf17	SNP	Missense_Mutation	4	100460508	G	C	33	75
BRCA	TCGA-C8-A1HM	CENPE	SNP	Missense_Mutation	4	104061230	C	G	32	68
BRCA	TCGA-C8-A1HM	SEC24B	SNP	Silent	4	110384524	C	T	32	63
BRCA	TCGA-C8-A1HM	ADAD1	SNP	Missense_Mutation	4	123332460	C	G	32	86
BRCA	TCGA-C8-A1HM	PCDH10	SNP	Silent	4	134073569	C	T	32	52
BRCA	TCGA-C8-A1HM	FREM3	SNP	Nonsense_Mutation	4	144617778	G	A	45	58
BRCA	TCGA-C8-A1HM	HAND2	SNP	Missense_Mutation	4	174449901	C	G	32	54
BRCA	TCGA-C8-A1HM	ADAM29	SNP	Missense_Mutation	4	175896863	C	T	17	55
BRCA	TCGA-C8-A1HM	TEC	SNP	Missense_Mutation	4	48141011	A	C	9	93
BRCA	TCGA-C8-A1HM	KIT	SNP	Missense_Mutation	4	55561716	C	A	30	51
BRCA	TCGA-C8-A1HM	TECRL	SNP	Missense_Mutation	4	65145813	C	A	28	76
BRCA	TCGA-C8-A1HM	SCARB2	SNP	Missense_Mutation	4	77100771	G	C	45	92
BRCA	TCGA-C8-A1HM	HERC6	SNP	Missense_Mutation	4	89345780	A	G	7	54
BRCA	TCGA-C8-A1HM	NREP	SNP	Missense_Mutation	5	111311071	C	T	31	42
BRCA	TCGA-C8-A1HM	SEC24A	SNP	Silent	5	134011803	C	T	29	66
BRCA	TCGA-C8-A1HM	PCDHA7	SNP	Missense_Mutation	5	140215216	G	C	33	59
BRCA	TCGA-C8-A1HM	SPINK5	SNP	Missense_Mutation	5	147493927	G	T	33	47
BRCA	TCGA-C8-A1HM	ATP10B	SNP	Missense_Mutation	5	160025900	C	T	29	63
BRCA	TCGA-C8-A1HM	ODZ2	SNP	Missense_Mutation	5	167689555	G	C	41	99
BRCA	TCGA-C8-A1HM	CREBRF	SNP	Splice_Site	5	172550082	G	A	33	89
BRCA	TCGA-C8-A1HM	FGFR4	SNP	Silent	5	176523632	G	A	33	73
BRCA	TCGA-C8-A1HM	C5orf51	SNP	Missense_Mutation	5	41909903	C	T	24	92
BRCA	TCGA-C8-A1HM	HMGCS1	SNP	Silent	5	43294891	G	C	33	62
BRCA	TCGA-C8-A1HM	EXOC3	SNP	Missense_Mutation	5	453877	G	C	41	96
BRCA	TCGA-C8-A1HM	SLC38A9	SNP	Silent	5	54931483	C	T	29	50
BRCA	TCGA-C8-A1HM	TMEM167A	SNP	Missense_Mutation	5	82360907	C	G	29	74
BRCA	TCGA-C8-A1HM	MCTP1	SNP	Silent	5	94353075	T	G	54	52
BRCA	TCGA-C8-A1HM	SCML4	SNP	Missense_Mutation	6	108041958	G	C	41	65
BRCA	TCGA-C8-A1HM	FAM26F	SNP	Missense_Mutation	6	116784770	G	C	33	58
BRCA	TCGA-C8-A1HM	SGK1	SNP	Missense_Mutation	6	134498933	C	T	32	48
BRCA	TCGA-C8-A1HM	IL20RA	SNP	Silent	6	137323193	G	A	45	48
BRCA	TCGA-C8-A1HM	RNF182	SNP	Missense_Mutation	6	13978083	C	A	18	65
BRCA	TCGA-C8-A1HM	PEX3	SNP	Missense_Mutation	6	143806383	C	G	29	74
BRCA	TCGA-C8-A1HM	SYNE1	SNP	Silent	6	152706962	C	T	30	59
BRCA	TCGA-C8-A1HM	TIAM2	SNP	Missense_Mutation	6	155450974	C	T	31	65
BRCA	TCGA-C8-A1HM	PARK2	SNP	Missense_Mutation	6	161969928	C	G	32	64
BRCA	TCGA-C8-A1HM	GPLD1	SNP	Missense_Mutation	6	24472849	C	G	28	80
BRCA	TCGA-C8-A1HM	HIST1H4E	SNP	Silent	6	26205022	C	T	29	50
BRCA	TCGA-C8-A1HM	SCAND3	SNP	Missense_Mutation	6	28540923	G	C	33	63
BRCA	TCGA-C8-A1HM	RIPK1	SNP	Splice_Site	6	3111036	G	A	33	90
BRCA	TCGA-C8-A1HM	ITPR3	SNP	Missense_Mutation	6	33662776	G	A	45	100
BRCA	TCGA-C8-A1HM	MRPL2	SNP	Missense_Mutation	6	43025966	C	T	29	48
BRCA	TCGA-C8-A1HM	ABCC10	SNP	Missense_Mutation	6	43409655	G	C	41	93
BRCA	TCGA-C8-A1HM	CLIC5	INS	Frame_Shift_Ins	6	46047913	-	GG	32	64
BRCA	TCGA-C8-A1HM	CLIC5	INS	Frame_Shift_Ins	6	46047914	-	CG	55	55
BRCA	TCGA-C8-A1HM	CD2AP	SNP	Missense_Mutation	6	47541929	C	G	32	94
BRCA	TCGA-C8-A1HM	HCRTR2	SNP	Silent	6	55142342	G	A	46	54
BRCA	TCGA-C8-A1HM	EYS	SNP	Missense_Mutation	6	64940650	C	A	29	62
BRCA	TCGA-C8-A1HM	RIMS1	SNP	Missense_Mutation	6	73110378	C	G	32	79
BRCA	TCGA-C8-A1HM	COL12A1	SNP	Missense_Mutation	6	75893674	G	A	45	83
BRCA	TCGA-C8-A1HM	UFL1	SNP	Missense_Mutation	6	96997292	C	G	32	57
BRCA	TCGA-C8-A1HM	LOC100287259	SNP	Silent	7	100275366	C	T	24	49
BRCA	TCGA-C8-A1HM	EPHB4	SNP	Missense_Mutation	7	100405049	C	G	29	93
BRCA	TCGA-C8-A1HM	LAMB1	SNP	Missense_Mutation	7	107577624	G	A	33	83
BRCA	TCGA-C8-A1HM	CAV1	SNP	Missense_Mutation	7	116199333	G	C	33	96
BRCA	TCGA-C8-A1HM	TMEM229A	SNP	Nonsense_Mutation	7	123672490	G	A	46	54
BRCA	TCGA-C8-A1HM	CHCHD3	SNP	Missense_Mutation	7	132470412	C	G	29	62
BRCA	TCGA-C8-A1HM	EXOC4	SNP	Missense_Mutation	7	133160142	C	G	29	83
BRCA	TCGA-C8-A1HM	SLC4A2	SNP	Missense_Mutation	7	150765003	G	A	41	82
BRCA	TCGA-C8-A1HM	ABCF2	SNP	Missense_Mutation	7	150922031	C	G	32	65
BRCA	TCGA-C8-A1HM	INTS1	SNP	Missense_Mutation	7	1539910	G	C	46	98
BRCA	TCGA-C8-A1HM	STK31	SNP	Missense_Mutation	7	23809284	C	T	29	70
BRCA	TCGA-C8-A1HM	CRHR2	SNP	Missense_Mutation	7	30706918	G	C	37	59
BRCA	TCGA-C8-A1HM	MLXIPL	SNP	Missense_Mutation	7	73011917	G	A	41	34
BRCA	TCGA-C8-A1HM	POR	DEL	In_Frame_Del	7	75609733	CCA	-	22	96
BRCA	TCGA-C8-A1HM	PCLO	SNP	Nonsense_Mutation	7	82784780	G	A	45	78
BRCA	TCGA-C8-A1HM	SOX7	SNP	Silent	8	10587809	G	A	41	75
BRCA	TCGA-C8-A1HM	ZFPM2	SNP	Nonsense_Mutation	8	106814537	G	T	45	100
BRCA	TCGA-C8-A1HM	ANGPT1	SNP	Missense_Mutation	8	108359272	C	G	32	67
BRCA	TCGA-C8-A1HM	PKHD1L1	SNP	Silent	8	110523136	G	C	45	53
BRCA	TCGA-C8-A1HM	ATAD2	SNP	Missense_Mutation	8	124346529	C	G	32	72
BRCA	TCGA-C8-A1HM	PHF20L1	SNP	Missense_Mutation	8	133836315	G	C	33	67
BRCA	TCGA-C8-A1HM	PTK2	SNP	Missense_Mutation	8	141900716	G	A	45	98
BRCA	TCGA-C8-A1HM	GPR20	SNP	Missense_Mutation	8	142367126	C	T	19	69
BRCA	TCGA-C8-A1HM	CYP11B2	SNP	Missense_Mutation	8	143993476	G	C	45	52
BRCA	TCGA-C8-A1HM	GPAA1	SNP	Missense_Mutation	8	145140888	G	A	37	93
BRCA	TCGA-C8-A1HM	PBK	SNP	Missense_Mutation	8	27668640	C	T	29	69
BRCA	TCGA-C8-A1HM	VCPIP1	SNP	Missense_Mutation	8	67578968	G	C	38	68
BRCA	TCGA-C8-A1HM	KCNB2	SNP	Silent	8	73480416	C	T	19	41
BRCA	TCGA-C8-A1HM	TPD52	SNP	Nonsense_Mutation	8	80965638	G	C	45	100
BRCA	TCGA-C8-A1HM	PTDSS1	SNP	Silent	8	97274286	G	C	41	67
BRCA	TCGA-C8-A1HM	CPQ	SNP	Splice_site	8	98155248	G	A	41	95
BRCA	TCGA-C8-A1HM	SLC44A1	SNP	Missense_Mutation	9	108127819	C	T	31	85
BRCA	TCGA-C8-A1HM	ZNF462	SNP	Missense_Mutation	9	109688576	G	A	45	74
BRCA	TCGA-C8-A1HM	TMEM245	SNP	Missense_Mutation	9	111812870	G	A	33	88
BRCA	TCGA-C8-A1HM	LHX2	SNP	Missense_Mutation	9	126794835	C	G	31	96
BRCA	TCGA-C8-A1HM	GARNL3	SNP	Missense_Mutation	9	130097556	G	C	45	92
BRCA	TCGA-C8-A1HM	AQP3	SNP	Silent	9	33442427	G	A	39	33
BRCA	TCGA-C8-A1HM	PRUNE2	SNP	Missense_Mutation	9	79326181	C	A	30	58
BRCA	TCGA-C8-A1HN	KIF14	DEL	Frame_Shift_Del	1	200587127	CT	-	28	49
BRCA	TCGA-C8-A1HN	GATA3	INS	Frame_Shift_Ins	10	8115876	-	G	26	100
BRCA	TCGA-C8-A1HN	GATA3	SNP	Missense_Mutation	10	8115877	C	A	22	84
BRCA	TCGA-C8-A1HN	ATHL1	SNP	Silent	11	289954	C	T	17	78
BRCA	TCGA-C8-A1HN	SCYL1	SNP	Silent	11	65293726	C	T	19	51
BRCA	TCGA-C8-A1HN	UCP3	SNP	Missense_Mutation	11	73714978	C	T	19	99
BRCA	TCGA-C8-A1HN	ATXN2	SNP	Missense_Mutation	12	111951217	G	C	35	73
BRCA	TCGA-C8-A1HN	TBX3	INS	Frame_Shift_Ins	12	115120697	-	GACC	47	48
BRCA	TCGA-C8-A1HN	PIWIL1	SNP	Missense_Mutation	12	130827177	G	A	38	78
BRCA	TCGA-C8-A1HN	FGF23	SNP	Missense_Mutation	12	4479664	G	A	43	58
BRCA	TCGA-C8-A1HN	KRT72	SNP	Silent	12	52981585	G	A	38	45
BRCA	TCGA-C8-A1HN	SILV	SNP	Silent	12	56349318	T	A	51	52
BRCA	TCGA-C8-A1HN	VWF	SNP	Nonsense_Mutation	12	6230460	G	A	39	65
BRCA	TCGA-C8-A1HN	LOC643677	SNP	Silent	13	103391215	T	C	63	56
BRCA	TCGA-C8-A1HN	ZFP36L1	SNP	Nonsense_Mutation	14	69256807	T	A	63	87
BRCA	TCGA-C8-A1HN	FMN1	SNP	Missense_Mutation	15	33359773	C	T	32	55
BRCA	TCGA-C8-A1HN	WDR72	DEL	Frame_Shift_Del	15	53889357	CA	-	29	58
BRCA	TCGA-C8-A1HN	EARS2	SNP	Missense_Mutation	16	23546599	G	A	39	71
BRCA	TCGA-C8-A1HN	ZNF385C	SNP	Missense_Mutation	17	40179106	G	A	39	63
BRCA	TCGA-C8-A1HN	LOC100287890	SNP	Splice_Site	17	40267634	G	C	44	51
BRCA	TCGA-C8-A1HN	EPG5	SNP	Silent	18	43503333	T	C	56	46
BRCA	TCGA-C8-A1HN	ZNF700	SNP	Missense_Mutation	19	12059318	G	T	41	44
BRCA	TCGA-C8-A1HN	ARMC6	SNP	Missense_Mutation	19	19162851	C	G	21	49
BRCA	TCGA-C8-A1HN	CIC	SNP	Missense_Mutation	19	42799050	C	T	23	60
BRCA	TCGA-C8-A1HN	KCNJ3	SNP	Nonsense_Mutation	2	155711277	G	T	45	100
BRCA	TCGA-C8-A1HN	LY75-CD302	SNP	Silent	2	160690697	T	C	55	51
BRCA	TCGA-C8-A1HN	KIDINS220	SNP	Missense_Mutation	2	8926362	C	A	31	100
BRCA	TCGA-C8-A1HN	CEP250	SNP	Silent	20	34091462	G	A	47	56
BRCA	TCGA-C8-A1HN	PLCG1	SNP	Silent	20	39792360	C	A	29	55
BRCA	TCGA-C8-A1HN	MATN4	SNP	Splice_Site	20	43926557	C	T	18	100
BRCA	TCGA-C8-A1HN	TSC22D3	SNP	Silent	23	106957953	A	G	8	52
BRCA	TCGA-C8-A1HN	COL4A6	SNP	Missense_Mutation	23	107412746	T	C	54	81
BRCA	TCGA-C8-A1HN	MXRA5	SNP	Missense_Mutation	23	3238284	A	T	2	47
BRCA	TCGA-C8-A1HN	SMC1A	SNP	Silent	23	53432455	G	A	46	52
BRCA	TCGA-C8-A1HN	RIBC1	SNP	Missense_Mutation	23	53453289	G	A	37	49
BRCA	TCGA-C8-A1HN	SHROOM2	SNP	Silent	23	9914800	C	T	31	47
BRCA	TCGA-C8-A1HN	TNIK	SNP	Missense_Mutation	3	170846562	T	G	55	88
BRCA	TCGA-C8-A1HN	XCR1	SNP	Missense_Mutation	3	46062898	G	A	40	40
BRCA	TCGA-C8-A1HN	SEMA3F	SNP	Nonsense_Mutation	3	50225261	C	T	19	63
BRCA	TCGA-C8-A1HN	PSMD6	SNP	Missense_Mutation	3	64004302	G	A	39	100
BRCA	TCGA-C8-A1HN	PET112	SNP	Missense_Mutation	4	152640617	G	T	41	100
BRCA	TCGA-C8-A1HN	MND1	SNP	Missense_Mutation	4	154335914	G	T	38	62
BRCA	TCGA-C8-A1HN	ABLIM3	SNP	Splice_site	5	148590290	G	T	41	100
BRCA	TCGA-C8-A1HN	ZSWIM6	SNP	Silent	5	60839535	G	A	40	42
BRCA	TCGA-C8-A1HN	SERINC5	SNP	Missense_Mutation	5	79473765	C	G	17	55
BRCA	TCGA-C8-A1HN	TMEM200A	SNP	Missense_Mutation	6	130762622	G	A	43	66
BRCA	TCGA-C8-A1HN	LRRN3	SNP	Missense_Mutation	7	110763274	A	G	6	94
BRCA	TCGA-C8-A1HN	CALD1	SNP	Silent	7	134613541	G	A	35	62
BRCA	TCGA-C8-A1HN	PREX2	SNP	Missense_Mutation	8	69000006	G	A	39	97
BRCA	TCGA-C8-A1HN	TSC1	SNP	Missense_Mutation	9	135772688	C	T	24	60
BRCA	TCGA-C8-A1HN	ZNF658	SNP	Silent	9	40773232	T	G	55	22
BRCA	TCGA-C8-A1HO	RSBN1	SNP	Silent	1	114340405	T	C	50	50
BRCA	TCGA-C8-A1HO	TPR	SNP	Missense_Mutation	1	186312558	G	C	34	74
BRCA	TCGA-C8-A1HO	GATA3	INS	Frame_Shift_Ins	10	8111494	-	CTGGAGG	54	91
BRCA	TCGA-C8-A1HO	ABCC8	SNP	Silent	11	17496468	C	A	21	63
BRCA	TCGA-C8-A1HO	OR4C46	SNP	Missense_Mutation	11	51515904	A	G	2	45
BRCA	TCGA-C8-A1HO	UCP2	SNP	Silent	11	73687705	C	T	29	59
BRCA	TCGA-C8-A1HO	BBS10	SNP	Missense_Mutation	12	76741035	C	T	32	73
BRCA	TCGA-C8-A1HO	OR4K13	SNP	Missense_Mutation	14	20502037	A	T	14	69
BRCA	TCGA-C8-A1HO	GOLGA8J	SNP	Silent	15	32686900	C	T	23	38
BRCA	TCGA-C8-A1HO	CDH1	SNP	Missense_Mutation	16	68856122	G	A	37	57
BRCA	TCGA-C8-A1HO	MAP2K4	SNP	Nonsense_Mutation	17	12011212	A	T	5	90
BRCA	TCGA-C8-A1HO	NARF	SNP	Missense_Mutation	17	80422247	G	A	35	65
BRCA	TCGA-C8-A1HO	DSC1	SNP	Missense_Mutation	18	28742499	A	G	11	71
BRCA	TCGA-C8-A1HO	PEPD	SNP	Silent	19	33991853	G	A	40	54
BRCA	TCGA-C8-A1HO	MAP4K1	SNP	Silent	19	39096100	C	T	28	52
BRCA	TCGA-C8-A1HO	ANKRD44	SNP	Missense_Mutation	2	197986120	G	A	42	100
BRCA	TCGA-C8-A1HO	C2orf71	SNP	Silent	2	29293999	G	T	47	40
BRCA	TCGA-C8-A1HO	EFEMP1	SNP	Nonsense_Mutation	2	56097974	G	A	39	75
BRCA	TCGA-C8-A1HO	SSTR4	SNP	Silent	20	23016243	C	T	19	47
BRCA	TCGA-C8-A1HO	IRS4	SNP	Missense_Mutation	23	107978002	C	T	31	63
BRCA	TCGA-C8-A1HO	MUC4	SNP	Silent	3	195515766	A	G	6	47
BRCA	TCGA-C8-A1HO	PCDHGB4	SNP	Missense_Mutation	5	140769108	C	T	23	75
BRCA	TCGA-C8-A1HO	PAPD4	SNP	Missense_Mutation	5	78919122	G	A	40	75
BRCA	TCGA-C8-A1HO	MAP3K5	SNP	Silent	6	136878950	C	G	30	51
BRCA	TCGA-C8-A1HO	FAM115C	SNP	Silent	7	143421584	G	A	47	62
BRCA	TCGA-C8-A1HO	UTP23	SNP	Missense_Mutation	8	117779018	T	A	55	89
BRCA	TCGA-C8-A1HO	KCNU1	SNP	Missense_Mutation	8	36644922	G	T	33	60
BRCA	TCGA-C8-A26V	CSF1	SNP	Missense_Mutation	1	110466502	C	G	32	58
BRCA	TCGA-C8-A26V	PTCHD2	SNP	Missense_Mutation	1	11579485	G	A	47	63
BRCA	TCGA-C8-A26V	MRPL9	SNP	Missense_Mutation	1	151735549	C	T	31	74
BRCA	TCGA-C8-A26V	HRNR	SNP	Silent	1	152190916	G	A	40	34
BRCA	TCGA-C8-A26V	FASLG	SNP	Missense_Mutation	1	172634780	C	A	30	55
BRCA	TCGA-C8-A26V	PAPPA2	SNP	Missense_Mutation	1	176564541	G	C	45	66
BRCA	TCGA-C8-A26V	PAPPA2	SNP	Missense_Mutation	1	176659458	G	A	38	86
BRCA	TCGA-C8-A26V	NUAK2	SNP	Missense_Mutation	1	205280937	A	G	12	91
BRCA	TCGA-C8-A26V	GALNT2	SNP	Silent	1	230381835	C	A	29	55
BRCA	TCGA-C8-A26V	PHC2	SNP	Missense_Mutation	1	33795806	C	A	19	95
BRCA	TCGA-C8-A26V	ASB17	SNP	Missense_Mutation	1	76397787	C	T	29	79
BRCA	TCGA-C8-A26V	GBF1	SNP	Missense_Mutation	10	104139146	G	C	45	99
BRCA	TCGA-C8-A26V	ACTR1A	SNP	Missense_Mutation	10	104250366	G	C	41	97
BRCA	TCGA-C8-A26V	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-C8-A26V	OR52K2	SNP	Missense_Mutation	11	4471266	C	G	29	57
BRCA	TCGA-C8-A26V	KIAA1731	SNP	Missense_Mutation	11	93460372	G	A	45	59
BRCA	TCGA-C8-A26V	PTHLH	SNP	Missense_Mutation	12	28116284	G	A	45	50
BRCA	TCGA-C8-A26V	KRT84	SNP	Missense_Mutation	12	52779047	C	G	30	97
BRCA	TCGA-C8-A26V	SP7	SNP	Silent	12	53722734	T	C	54	51
BRCA	TCGA-C8-A26V	CKAP2	SNP	Missense_Mutation	13	53042449	C	G	32	50
BRCA	TCGA-C8-A26V	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-C8-A26V	RALGAPA1	SNP	Silent	14	36096648	T	G	56	61
BRCA	TCGA-C8-A26V	TM2D3	SNP	Missense_Mutation	15	102190296	C	G	32	93
BRCA	TCGA-C8-A26V	MPI	SNP	Missense_Mutation	15	75185065	G	C	33	99
BRCA	TCGA-C8-A26V	CREBBP	SNP	Missense_Mutation	16	3777933	G	A	37	99
BRCA	TCGA-C8-A26V	FHOD1	SNP	Missense_Mutation	16	67265711	G	A	47	52
BRCA	TCGA-C8-A26V	C16orf86	SNP	Missense_Mutation	16	67701972	C	T	32	59
BRCA	TCGA-C8-A26V	FLCN	SNP	Nonsense_Mutation	17	17122397	G	C	45	62
BRCA	TCGA-C8-A26V	TP53	SNP	Missense_Mutation	17	7577586	A	C	12	86
BRCA	TCGA-C8-A26V	EPG5	SNP	Missense_Mutation	18	43502498	C	G	30	100
BRCA	TCGA-C8-A26V	CYP4F22	SNP	Missense_Mutation	19	15636257	G	A	38	75
BRCA	TCGA-C8-A26V	GRIK5	SNP	Missense_Mutation	19	42558054	C	A	18	98
BRCA	TCGA-C8-A26V	ZNF575	SNP	Missense_Mutation	19	44038639	C	G	21	52
BRCA	TCGA-C8-A26V	ALDH16A1	SNP	Silent	19	49964940	G	C	39	46
BRCA	TCGA-C8-A26V	IL1RN	SNP	Missense_Mutation	2	113888714	G	A	45	50
BRCA	TCGA-C8-A26V	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	TCGA-C8-A26V	PRR21	SNP	Missense_Mutation	2	240982199	A	C	10	10
BRCA	TCGA-C8-A26V	PROM2	SNP	Silent	2	95945629	A	G	16	45
BRCA	TCGA-C8-A26V	TGM3	SNP	Silent	20	2297758	C	T	27	21
BRCA	TCGA-C8-A26V	PTPRA	SNP	Missense_Mutation	20	2985705	C	G	32	99
BRCA	TCGA-C8-A26V	EDN3	SNP	Silent	20	57876517	G	A	35	62
BRCA	TCGA-C8-A26V	LAMA5	SNP	Missense_Mutation	20	60904057	G	C	33	63
BRCA	TCGA-C8-A26V	ZGPAT	SNP	Missense_Mutation	20	62340158	G	A	33	75
BRCA	TCGA-C8-A26V	KRTAP13-3	SNP	Missense_Mutation	21	31797741	G	C	45	44
BRCA	TCGA-C8-A26V	TTC28	SNP	Silent	22	28395192	G	C	45	50
BRCA	TCGA-C8-A26V	ACO2	SNP	Silent	22	41923399	C	T	29	57
BRCA	TCGA-C8-A26V	GUCY2F	SNP	Missense_Mutation	23	108635297	A	T	2	70
BRCA	TCGA-C8-A26V	CHRDL1	SNP	Missense_Mutation	23	109963075	G	A	39	57
BRCA	TCGA-C8-A26V	TRPC5	SNP	Missense_Mutation	23	111078166	A	G	11	90
BRCA	TCGA-C8-A26V	RBMX	SNP	Silent	23	135961212	T	C	55	50
BRCA	TCGA-C8-A26V	MAGEC1	SNP	Missense_Mutation	23	140994861	C	G	20	49
BRCA	TCGA-C8-A26V	MTMR1	SNP	Missense_Mutation	23	149905753	G	C	33	97
BRCA	TCGA-C8-A26V	WDR13	SNP	Silent	23	48463345	C	T	29	73
BRCA	TCGA-C8-A26V	TRIM42	SNP	Missense_Mutation	3	140409844	C	G	32	59
BRCA	TCGA-C8-A26V	ZFYVE20	SNP	Nonsense_Mutation	3	15115866	G	C	45	54
BRCA	TCGA-C8-A26V	LIPH	SNP	Silent	3	185245369	G	C	37	33
BRCA	TCGA-C8-A26V	POU1F1	SNP	Missense_Mutation	3	87309075	G	C	33	79
BRCA	TCGA-C8-A26V	DRD5	SNP	Missense_Mutation	4	9784305	G	A	45	82
BRCA	TCGA-C8-A26V	SEPT8	SNP	Silent	5	132101177	C	G	21	50
BRCA	TCGA-C8-A26V	SEC24A	SNP	Silent	5	134032905	C	T	29	59
BRCA	TCGA-C8-A26V	ADAM19	SNP	Silent	5	156957874	G	A	40	40
BRCA	TCGA-C8-A26V	GABRA1	SNP	Silent	5	161302575	G	A	45	61
BRCA	TCGA-C8-A26V	FAM193B	SNP	Missense_Mutation	5	176951919	A	C	6	56
BRCA	TCGA-C8-A26V	GRIK2	SNP	Silent	6	102069879	C	T	29	66
BRCA	TCGA-C8-A26V	AKD1	SNP	Missense_Mutation	6	109818699	C	T	29	70
BRCA	TCGA-C8-A26V	LAMA4	SNP	Missense_Mutation	6	112499344	C	G	29	51
BRCA	TCGA-C8-A26V	LATS1	SNP	Missense_Mutation	6	150023155	T	A	52	64
BRCA	TCGA-C8-A26V	RAET1E	SNP	Missense_Mutation	6	150211130	C	G	32	70
BRCA	TCGA-C8-A26V	TUBB	SNP	Silent	6	30691484	G	C	45	46
BRCA	TCGA-C8-A26V	KIF6	SNP	Missense_Mutation	6	39607395	C	A	20	51
BRCA	TCGA-C8-A26V	IMMP2L	SNP	Missense_Mutation	7	111127384	G	A	35	85
BRCA	TCGA-C8-A26V	LUC7L2	SNP	Missense_Mutation	7	139102409	G	A	38	90
BRCA	TCGA-C8-A26V	NFE2L3	SNP	Missense_Mutation	7	26224267	G	A	45	71
BRCA	TCGA-C8-A26V	ICA1	SNP	Silent	7	8153625	A	G	7	50
BRCA	TCGA-C8-A26V	YWHAZ	SNP	Missense_Mutation	8	101961020	C	G	30	78
BRCA	TCGA-C8-A26V	KCNV1	SNP	Missense_Mutation	8	110984663	C	A	32	75
BRCA	TCGA-C8-A26V	CYP11B2	SNP	Missense_Mutation	8	143994845	G	A	40	73
BRCA	TCGA-C8-A26V	RAB11FIP1	SNP	Missense_Mutation	8	37734696	G	A	37	62
BRCA	TCGA-C8-A26V	FAM75D1	SNP	Silent	9	84608184	G	A	39	45
BRCA	TCGA-C8-A26V	CDC14B	SNP	Missense_Mutation	9	99271985	C	G	32	85
BRCA	TCGA-C8-A26W	HRNR	SNP	Silent	1	152186443	A	G	8	42
BRCA	TCGA-C8-A26W	DCST2	SNP	Missense_Mutation	1	154995617	G	A	45	61
BRCA	TCGA-C8-A26W	RGS16	SNP	Missense_Mutation	1	182569504	G	A	39	54
BRCA	TCGA-C8-A26W	GBP7	SNP	Missense_Mutation	1	89630428	C	T	22	82
BRCA	TCGA-C8-A26W	LBX1	SNP	Missense_Mutation	10	102987344	G	T	38	74
BRCA	TCGA-C8-A26W	PCDH15	SNP	Silent	10	55587197	A	C	11	41
BRCA	TCGA-C8-A26W	MICAL2	SNP	Missense_Mutation	11	12245016	C	T	31	97
BRCA	TCGA-C8-A26W	SLC6A5	SNP	Missense_Mutation	11	20676303	C	G	32	68
BRCA	TCGA-C8-A26W	APBB1	SNP	Missense_Mutation	11	6417361	G	A	42	89
BRCA	TCGA-C8-A26W	FAM76B	SNP	Missense_Mutation	11	95520814	C	T	25	95
BRCA	TCGA-C8-A26W	CPNE8	SNP	Nonsense_Mutation	12	39161456	G	A	37	72
BRCA	TCGA-C8-A26W	TMCC3	SNP	Missense_Mutation	12	94975411	C	G	32	100
BRCA	TCGA-C8-A26W	GJA3	SNP	Silent	13	20717290	G	A	38	37
BRCA	TCGA-C8-A26W	OR4Q3	SNP	Missense_Mutation	14	20216391	G	A	41	66
BRCA	TCGA-C8-A26W	HERC2	SNP	Missense_Mutation	15	28387403	G	C	43	100
BRCA	TCGA-C8-A26W	GTF3C1	SNP	Missense_Mutation	16	27556779	T	A	50	85
BRCA	TCGA-C8-A26W	SETD1A	SNP	Silent	16	30975564	C	T	29	58
BRCA	TCGA-C8-A26W	CDH8	SNP	Splice_site	16	61935083	C	A	22	77
BRCA	TCGA-C8-A26W	TP53	SNP	Missense_Mutation	17	7577120	C	A	19	94
BRCA	TCGA-C8-A26W	SS18	SNP	Missense_Mutation	18	23619391	G	C	45	97
BRCA	TCGA-C8-A26W	UPK1A	SNP	Silent	19	36164378	G	C	45	62
BRCA	TCGA-C8-A26W	CYP2F1	SNP	Splice_site	19	41627364	C	T	27	45
BRCA	TCGA-C8-A26W	SIGLEC8	SNP	Missense_Mutation	19	51961352	T	C	63	33
BRCA	TCGA-C8-A26W	LILRB1	SNP	Missense_Mutation	19	55148052	C	A	30	28
BRCA	TCGA-C8-A26W	CCDC74B	SNP	Missense_Mutation	2	130897469	C	T	32	59
BRCA	TCGA-C8-A26W	XIRP2	SNP	Missense_Mutation	2	168107692	A	G	9	64
BRCA	TCGA-C8-A26W	DLX2	SNP	Missense_Mutation	2	172967226	G	A	37	92
BRCA	TCGA-C8-A26W	TTN	SNP	Missense_Mutation	2	179426582	C	T	29	100
BRCA	TCGA-C8-A26W	FAM171B	SNP	Silent	2	187626830	C	G	21	54
BRCA	TCGA-C8-A26W	APOB	SNP	Silent	2	21226147	A	G	8	62
BRCA	TCGA-C8-A26W	DOK1	SNP	Missense_Mutation	2	74783592	G	C	33	59
BRCA	TCGA-C8-A26W	MYLK2	SNP	Missense_Mutation	20	30409483	G	A	37	62
BRCA	TCGA-C8-A26W	CDK5RAP1	SNP	Silent	20	31967344	G	A	33	63
BRCA	TCGA-C8-A26W	NFATC2	SNP	Missense_Mutation	20	50051765	C	G	32	52
BRCA	TCGA-C8-A26W	SGSM3	SNP	Missense_Mutation	22	40802535	G	C	43	67
BRCA	TCGA-C8-A26W	KIAA1210	SNP	Silent	23	118221704	C	T	32	36
BRCA	TCGA-C8-A26W	RBP1	SNP	Missense_Mutation	3	139258365	C	T	31	90
BRCA	TCGA-C8-A26W	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-C8-A26W	ABCC5	SNP	Missense_Mutation	3	183677527	C	T	32	86
BRCA	TCGA-C8-A26W	CSPG5	SNP	Missense_Mutation	3	47610685	T	A	50	87
BRCA	TCGA-C8-A26W	MTTP	SNP	Missense_Mutation	4	100532382	A	G	6	64
BRCA	TCGA-C8-A26W	SLIT2	SNP	Missense_Mutation	4	20490503	C	T	31	64
BRCA	TCGA-C8-A26W	NUS1	SNP	Silent	6	117996896	G	T	38	92
BRCA	TCGA-C8-A26W	LTV1	SNP	Missense_Mutation	6	144183272	G	A	41	77
BRCA	TCGA-C8-A26W	EYS	SNP	Missense_Mutation	6	64431555	A	G	2	54
BRCA	TCGA-C8-A26W	LY86	SNP	Missense_Mutation	6	6589046	T	G	55	72
BRCA	TCGA-C8-A26W	GNB2	SNP	Missense_Mutation	7	100276323	C	T	24	78
BRCA	TCGA-C8-A26W	HGF	SNP	Missense_Mutation	7	81334803	C	T	30	88
BRCA	TCGA-C8-A26W	WDYHV1	SNP	Missense_Mutation	8	124442245	C	G	27	80
BRCA	TCGA-C8-A26W	DBC1	SNP	Silent	9	121971044	G	A	45	55
BRCA	TCGA-C8-A26W	FOCAD	SNP	Silent	9	20990142	G	A	45	73
BRCA	TCGA-C8-A26W	DNAJB5	SNP	Missense_Mutation	9	34996381	T	C	56	90
BRCA	TCGA-C8-A26W	CCDC107	SNP	Silent	9	35660615	G	A	45	58
BRCA	TCGA-C8-A26X	KCND3	SNP	Missense_Mutation	1	112321061	G	C	45	70
BRCA	TCGA-C8-A26X	ATF6	INS	Frame_Shift_Ins	1	161821536	-	A	17	68
BRCA	TCGA-C8-A26X	DENND1B	DEL	Frame_Shift_Del	1	197641237	TGTC	-	51	89
BRCA	TCGA-C8-A26X	SRSF11	SNP	Splice_Site	1	70716188	T	C	57	86
BRCA	TCGA-C8-A26X	PIK3CD	SNP	Missense_Mutation	1	9784395	G	A	38	99
BRCA	TCGA-C8-A26X	GBF1	SNP	Missense_Mutation	10	104111081	G	A	48	100
BRCA	TCGA-C8-A26X	PLCE1	SNP	Missense_Mutation	10	95994013	G	A	38	57
BRCA	TCGA-C8-A26X	CCDC89	SNP	Missense_Mutation	11	85396110	C	A	28	79
BRCA	TCGA-C8-A26X	CLEC9A	SNP	Silent	12	10213790	G	A	46	61
BRCA	TCGA-C8-A26X	C12orf42	SNP	Missense_Mutation	12	103700001	G	T	39	44
BRCA	TCGA-C8-A26X	NCOR2	SNP	Missense_Mutation	12	124904522	C	T	23	97
BRCA	TCGA-C8-A26X	MLL2	SNP	Missense_Mutation	12	49427194	G	C	48	52
BRCA	TCGA-C8-A26X	KRT84	SNP	Missense_Mutation	12	52779276	G	A	39	61
BRCA	TCGA-C8-A26X	ACIN1	SNP	Missense_Mutation	14	23548943	C	A	32	76
BRCA	TCGA-C8-A26X	TUBGCP5	INS	Frame_Shift_Ins	15	22869955	-	G	63	75
BRCA	TCGA-C8-A26X	DYX1C1	SNP	Splice_Site	15	55742419	C	A	18	84
BRCA	TCGA-C8-A26X	SRCAP	SNP	Silent	16	30749899	A	T	11	48
BRCA	TCGA-C8-A26X	UNC13D	SNP	Missense_Mutation	17	73832707	G	A	33	64
BRCA	TCGA-C8-A26X	TP53	SNP	Missense_Mutation	17	7578413	C	T	17	97
BRCA	TCGA-C8-A26X	FN3K	SNP	Missense_Mutation	17	80708303	C	T	23	71
BRCA	TCGA-C8-A26X	ZNF85	SNP	Missense_Mutation	19	21132063	A	G	8	77
BRCA	TCGA-C8-A26X	HKR1	SNP	Missense_Mutation	19	37854220	G	A	39	54
BRCA	TCGA-C8-A26X	FAP	SNP	Silent	2	163072473	G	A	37	36
BRCA	TCGA-C8-A26X	TTN	SNP	Missense_Mutation	2	179440959	C	G	20	50
BRCA	TCGA-C8-A26X	TTN	SNP	Silent	2	179587200	G	T	45	50
BRCA	TCGA-C8-A26X	REL	SNP	Silent	2	61149040	A	G	5	53
BRCA	TCGA-C8-A26X	SYCP2	SNP	Missense_Mutation	20	58448924	C	T	31	28
BRCA	TCGA-C8-A26X	MYO18B	SNP	Missense_Mutation	22	26164533	G	A	39	39
BRCA	TCGA-C8-A26X	GGA1	SNP	Missense_Mutation	22	38013003	C	T	19	79
BRCA	TCGA-C8-A26X	GCAT	SNP	Missense_Mutation	22	38206091	T	C	50	88
BRCA	TCGA-C8-A26X	ARHGAP4	SNP	Silent	23	153174974	C	A	21	37
BRCA	TCGA-C8-A26X	PRICKLE3	SNP	Missense_Mutation	23	49034432	G	A	38	79
BRCA	TCGA-C8-A26X	SLC16A2	SNP	Nonsense_Mutation	23	73751293	C	T	25	57
BRCA	TCGA-C8-A26X	PVRL3	SNP	Missense_Mutation	3	110841072	T	G	50	70
BRCA	TCGA-C8-A26X	POLQ	SNP	Missense_Mutation	3	121206799	G	A	45	47
BRCA	TCGA-C8-A26X	PIK3CA	DEL	In_Frame_Del	3	178916922	ACCAGTAGG	-	2	52
BRCA	TCGA-C8-A26X	EIF4A2	SNP	Missense_Mutation	3	186507018	C	T	17	95
BRCA	TCGA-C8-A26X	MUC4	SNP	Missense_Mutation	3	195506579	T	C	59	52
BRCA	TCGA-C8-A26X	SCN5A	SNP	Missense_Mutation	3	38592337	C	T	21	98
BRCA	TCGA-C8-A26X	CCRN4L	SNP	Missense_Mutation	4	139964462	C	T	24	79
BRCA	TCGA-C8-A26X	TLR3	SNP	Missense_Mutation	4	187004711	C	T	30	70
BRCA	TCGA-C8-A26X	CLOCK	DEL	Frame_Shift_Del	4	56316278	GT	-	40	98
BRCA	TCGA-C8-A26X	TAF9	SNP	Missense_Mutation	5	68661327	C	A	29	98
BRCA	TCGA-C8-A26X	MSH3	SNP	Missense_Mutation	5	80088607	A	G	12	86
BRCA	TCGA-C8-A26X	ENPP5	SNP	Missense_Mutation	6	46135740	T	A	52	58
BRCA	TCGA-C8-A26X	EEF1A1	INS	Frame_Shift_Ins	6	74227785	-	A	17	99
BRCA	TCGA-C8-A26X	TSGA13	SNP	Missense_Mutation	7	130368439	C	G	28	32
BRCA	TCGA-C8-A26X	PRKDC	SNP	Missense_Mutation	8	48801132	C	A	25	78
BRCA	TCGA-C8-A26X	CPA6	SNP	Silent	8	68346411	C	T	23	37
BRCA	TCGA-C8-A26Z	IQGAP3	SNP	Silent	1	156530742	A	C	6	50
BRCA	TCGA-C8-A26Z	OR6K3	SNP	Missense_Mutation	1	158687491	G	A	39	50
BRCA	TCGA-C8-A26Z	DEGS1	SNP	Missense_Mutation	1	224377282	A	G	3	92
BRCA	TCGA-C8-A26Z	EIF2C1	SNP	Missense_Mutation	1	36358211	G	A	38	100
BRCA	TCGA-C8-A26Z	SH3GLB1	SNP	Missense_Mutation	1	87207920	A	G	4	69
BRCA	TCGA-C8-A26Z	KCNK18	SNP	Missense_Mutation	10	118969342	G	T	33	55
BRCA	TCGA-C8-A26Z	ZNF248	SNP	Missense_Mutation	10	38121863	A	C	6	60
BRCA	TCGA-C8-A26Z	MAPK8IP1	SNP	Missense_Mutation	11	45926335	G	A	40	61
BRCA	TCGA-C8-A26Z	ABCC9	SNP	Missense_Mutation	12	22063221	C	G	24	87
BRCA	TCGA-C8-A26Z	ARNTL2	SNP	Missense_Mutation	12	27533206	G	A	39	90
BRCA	TCGA-C8-A26Z	FOXM1	SNP	Missense_Mutation	12	2983155	G	A	40	46
BRCA	TCGA-C8-A26Z	ERBB3	SNP	Missense_Mutation	12	56487649	G	T	48	65
BRCA	TCGA-C8-A26Z	PTPRB	SNP	Missense_Mutation	12	71016202	T	C	58	66
BRCA	TCGA-C8-A26Z	DNAJC3	SNP	Missense_Mutation	13	96412387	G	A	46	64
BRCA	TCGA-C8-A26Z	CDH24	SNP	Missense_Mutation	14	23521744	G	T	46	56
BRCA	TCGA-C8-A26Z	MAP1A	SNP	Missense_Mutation	15	43816672	G	T	47	74
BRCA	TCGA-C8-A26Z	VWA3A	SNP	Missense_Mutation	16	22159506	G	A	40	60
BRCA	TCGA-C8-A26Z	VPS35	DEL	Frame_Shift_Del	16	46694483	CT	-	28	52
BRCA	TCGA-C8-A26Z	SDK2	SNP	Missense_Mutation	17	71346499	G	T	33	81
BRCA	TCGA-C8-A26Z	FXYD3	SNP	Missense_Mutation	19	35610312	T	G	62	67
BRCA	TCGA-C8-A26Z	FUZ	SNP	Missense_Mutation	19	50315962	C	T	30	86
BRCA	TCGA-C8-A26Z	POTEI	SNP	Silent	2	131258114	A	G	8	34
BRCA	TCGA-C8-A26Z	XIRP2	SNP	Missense_Mutation	2	168108454	A	T	3	51
BRCA	TCGA-C8-A26Z	ALMS1	SNP	Missense_Mutation	2	73659408	A	C	8	54
BRCA	TCGA-C8-A26Z	SLC24A3	DEL	Frame_Shift_Del	20	19665914	AG	-	7	40
BRCA	TCGA-C8-A26Z	KRTAP19-4	SNP	Missense_Mutation	21	31869332	G	A	39	48
BRCA	TCGA-C8-A26Z	ZIC3	SNP	Missense_Mutation	23	136651211	G	A	38	97
BRCA	TCGA-C8-A26Z	EBP	SNP	Silent	23	48385405	A	T	12	48
BRCA	TCGA-C8-A26Z	TRANK1	SNP	Missense_Mutation	3	36900329	G	T	48	50
BRCA	TCGA-C8-A26Z	POU4F2	SNP	Silent	4	147561516	C	T	23	56
BRCA	TCGA-C8-A26Z	SH3PXD2B	SNP	Silent	5	171766138	G	A	38	41
BRCA	TCGA-C8-A26Z	RUNX2	SNP	Nonsense_Mutation	6	45399750	G	T	47	100
BRCA	TCGA-C8-A26Z	SENP6	SNP	Nonsense_Mutation	6	76412369	G	A	47	91
BRCA	TCGA-C8-A26Z	ZAN	SNP	Silent	7	100349543	C	T	21	53
BRCA	TCGA-C8-A26Z	KIAA1549	SNP	Missense_Mutation	7	138593769	G	A	48	72
BRCA	TCGA-C8-A26Z	STAG3	SNP	Missense_Mutation	7	99802723	C	T	30	81
BRCA	TCGA-C8-A26Z	EFR3A	SNP	Missense_Mutation	8	132962331	G	A	37	59
BRCA	TCGA-C8-A26Z	FAM135B	SNP	Missense_Mutation	8	139165210	G	A	45	64
BRCA	TCGA-C8-A26Z	TEX15	SNP	Missense_Mutation	8	30694937	G	C	48	51
BRCA	TCGA-C8-A26Z	RP1	SNP	Missense_Mutation	8	55537775	C	T	31	58
BRCA	TCGA-C8-A26Z	KIAA1429	SNP	Missense_Mutation	8	95502298	C	T	19	99
BRCA	TCGA-C8-A26Z	KIAA2026	SNP	Missense_Mutation	9	5968121	G	A	38	78
BRCA	TCGA-C8-A273	FAM78B	SNP	Missense_Mutation	1	166039779	C	A	32	82
BRCA	TCGA-C8-A273	DNA2	SNP	Silent	10	70231706	G	A	38	55
BRCA	TCGA-C8-A273	GATA3	INS	Frame_Shift_Ins	10	8111513	-	G	51	47
BRCA	TCGA-C8-A273	OR8H1	SNP	Missense_Mutation	11	56058034	C	T	31	50
BRCA	TCGA-C8-A273	NPAS4	SNP	Missense_Mutation	11	66191476	G	A	34	61
BRCA	TCGA-C8-A273	ANO1	SNP	Silent	11	70007819	C	T	19	57
BRCA	TCGA-C8-A273	EP400	SNP	Silent	12	132562209	G	A	40	41
BRCA	TCGA-C8-A273	TTC7B	SNP	Missense_Mutation	14	91077095	G	T	41	85
BRCA	TCGA-C8-A273	SNUPN	SNP	Nonsense_Mutation	15	75901960	G	T	36	69
BRCA	TCGA-C8-A273	CACNA1G	SNP	Silent	17	48703503	C	G	22	62
BRCA	TCGA-C8-A273	CACNA1G	SNP	Missense_Mutation	17	48703604	C	T	21	58
BRCA	TCGA-C8-A273	NACA2	SNP	Silent	17	59668404	G	A	47	36
BRCA	TCGA-C8-A273	POLR2A	SNP	Missense_Mutation	17	7402650	A	C	6	92
BRCA	TCGA-C8-A273	SIRT7	SNP	Splice_site	17	79875594	A	C	6	57
BRCA	TCGA-C8-A273	SCN3A	SNP	Missense_Mutation	2	165952146	G	A	42	100
BRCA	TCGA-C8-A273	SIRPB1	SNP	Missense_Mutation	20	1551639	G	A	37	48
BRCA	TCGA-C8-A273	SLC24A3	SNP	Silent	20	19662508	C	T	19	49
BRCA	TCGA-C8-A273	APOBEC3A	SNP	Splice_Site	22	39357391	G	A	35	45
BRCA	TCGA-C8-A273	FRG2	SNP	Silent	4	190947916	C	T	23	34
BRCA	TCGA-C8-A273	PCDHB6	SNP	Missense_Mutation	5	140530373	G	A	40	49
BRCA	TCGA-C8-A273	UBN2	SNP	Missense_Mutation	7	138968233	C	A	30	86
BRCA	TCGA-C8-A274	KIF1B	SNP	Missense_Mutation	1	10363841	G	C	33	60
BRCA	TCGA-C8-A274	AMY2B	SNP	Silent	1	104116527	C	T	30	61
BRCA	TCGA-C8-A274	UBE2J2	SNP	Missense_Mutation	1	1190722	G	T	47	97
BRCA	TCGA-C8-A274	VPS13D	SNP	Missense_Mutation	1	12389921	G	A	45	82
BRCA	TCGA-C8-A274	ACP6	SNP	Missense_Mutation	1	147126421	G	C	33	63
BRCA	TCGA-C8-A274	CA14	SNP	Missense_Mutation	1	150235547	G	C	33	66
BRCA	TCGA-C8-A274	C1orf56	SNP	Silent	1	151021205	C	T	29	45
BRCA	TCGA-C8-A274	GON4L	SNP	Missense_Mutation	1	155735772	G	C	41	52
BRCA	TCGA-C8-A274	SEMA4A	SNP	Missense_Mutation	1	156142776	C	G	32	47
BRCA	TCGA-C8-A274	SEMA4A	SNP	Nonsense_Mutation	1	156146369	C	T	21	65
BRCA	TCGA-C8-A274	NES	SNP	Missense_Mutation	1	156642072	C	T	29	63
BRCA	TCGA-C8-A274	OR10R2	SNP	Missense_Mutation	1	158449727	G	T	33	63
BRCA	TCGA-C8-A274	DCAF6	SNP	Silent	1	168034923	G	A	45	52
BRCA	TCGA-C8-A274	SMG7	SNP	Silent	1	183511502	G	A	45	67
BRCA	TCGA-C8-A274	ASPM	SNP	Splice_Site	1	197113231	C	T	28	94
BRCA	TCGA-C8-A274	CDK18	SNP	Silent	1	205499425	G	A	45	64
BRCA	TCGA-C8-A274	PFKFB2	SNP	Silent	1	207243670	C	T	28	64
BRCA	TCGA-C8-A274	CENPF	SNP	Missense_Mutation	1	214815627	G	A	45	56
BRCA	TCGA-C8-A274	ACTA1	SNP	Missense_Mutation	1	229567374	C	T	30	81
BRCA	TCGA-C8-A274	ACTN2	SNP	Silent	1	236914892	C	T	29	62
BRCA	TCGA-C8-A274	RYR2	SNP	Silent	1	237895411	G	T	45	50
BRCA	TCGA-C8-A274	C1orf101	SNP	Missense_Mutation	1	244803299	G	C	45	54
BRCA	TCGA-C8-A274	OR2AK2	SNP	Silent	1	248128843	C	T	30	49
BRCA	TCGA-C8-A274	OR2L3	SNP	Missense_Mutation	1	248224664	G	A	45	48
BRCA	TCGA-C8-A274	OR2T1	SNP	Silent	1	248569793	C	T	26	40
BRCA	TCGA-C8-A274	CSMD2	SNP	Missense_Mutation	1	34090136	C	T	31	99
BRCA	TCGA-C8-A274	STK40	SNP	Missense_Mutation	1	36814341	C	G	32	94
BRCA	TCGA-C8-A274	CLCA4	SNP	Missense_Mutation	1	87045807	A	T	3	67
BRCA	TCGA-C8-A274	COL17A1	SNP	Missense_Mutation	10	105812868	C	A	21	62
BRCA	TCGA-C8-A274	NHLRC2	SNP	Missense_Mutation	10	115614776	G	C	41	80
BRCA	TCGA-C8-A274	C10orf114	SNP	Missense_Mutation	10	21784544	G	T	37	52
BRCA	TCGA-C8-A274	COMMD3	SNP	Silent	10	22606826	G	A	45	76
BRCA	TCGA-C8-A274	PITRM1	SNP	Missense_Mutation	10	3191919	C	T	27	62
BRCA	TCGA-C8-A274	DIP2C	SNP	Missense_Mutation	10	375423	C	T	19	100
BRCA	TCGA-C8-A274	WDFY4	SNP	Silent	10	49931543	C	T	32	52
BRCA	TCGA-C8-A274	CALML5	SNP	Missense_Mutation	10	5541299	C	T	27	58
BRCA	TCGA-C8-A274	FAM208B	SNP	Missense_Mutation	10	5799561	C	G	29	45
BRCA	TCGA-C8-A274	DNAJC9	SNP	Missense_Mutation	10	75006522	C	T	30	96
BRCA	TCGA-C8-A274	TTC18	SNP	Missense_Mutation	10	75035266	G	C	33	62
BRCA	TCGA-C8-A274	KIF20B	SNP	Silent	10	91503681	C	G	29	50
BRCA	TCGA-C8-A274	CNTN5	SNP	Silent	11	100095465	G	A	45	78
BRCA	TCGA-C8-A274	COPB1	SNP	Missense_Mutation	11	14486547	G	A	41	100
BRCA	TCGA-C8-A274	OR52K2	SNP	Missense_Mutation	11	4470867	C	G	32	57
BRCA	TCGA-C8-A274	MADD	SNP	Missense_Mutation	11	47345270	G	C	45	98
BRCA	TCGA-C8-A274	PPFIA1	SNP	Missense_Mutation	11	70202291	C	T	29	74
BRCA	TCGA-C8-A274	SCUBE2	SNP	Missense_Mutation	11	9043489	T	A	60	46
BRCA	TCGA-C8-A274	TCTN2	SNP	Silent	12	124189191	G	A	39	15
BRCA	TCGA-C8-A274	DENND5B	SNP	Silent	12	31632974	A	G	3	50
BRCA	TCGA-C8-A274	KRT74	SNP	Missense_Mutation	12	52962061	T	A	54	77
BRCA	TCGA-C8-A274	TNFRSF1A	SNP	Missense_Mutation	12	6443376	G	A	45	47
BRCA	TCGA-C8-A274	ATN1	SNP	Missense_Mutation	12	7043656	C	T	21	78
BRCA	TCGA-C8-A274	TBC1D15	SNP	Missense_Mutation	12	72288506	T	A	64	91
BRCA	TCGA-C8-A274	NALCN	SNP	Silent	13	102029101	C	T	32	51
BRCA	TCGA-C8-A274	ARHGEF7	SNP	Silent	13	111955406	G	A	45	54
BRCA	TCGA-C8-A274	TRIM13	SNP	Nonsense_Mutation	13	50587116	G	A	47	78
BRCA	TCGA-C8-A274	TRAF3	SNP	Nonsense_Mutation	14	103363658	C	T	29	87
BRCA	TCGA-C8-A274	TRAF3	INS	Frame_Shift_Ins	14	103369680	-	A	51	80
BRCA	TCGA-C8-A274	CHD8	SNP	Missense_Mutation	14	21868712	C	T	31	83
BRCA	TCGA-C8-A274	MYH7	SNP	Silent	14	23885225	C	T	32	57
BRCA	TCGA-C8-A274	DCAF11	SNP	Missense_Mutation	14	24586891	C	T	32	67
BRCA	TCGA-C8-A274	DCAF11	SNP	Nonsense_Mutation	14	24587304	C	T	29	96
BRCA	TCGA-C8-A274	TM9SF1	SNP	Silent	14	24659852	G	A	33	64
BRCA	TCGA-C8-A274	HECTD1	SNP	Missense_Mutation	14	31604763	C	T	32	100
BRCA	TCGA-C8-A274	SLC35F4	SNP	Missense_Mutation	14	58063474	C	T	30	41
BRCA	TCGA-C8-A274	DACT1	SNP	Missense_Mutation	14	59112495	C	T	29	59
BRCA	TCGA-C8-A274	KCNH5	SNP	Silent	14	63174898	C	A	21	84
BRCA	TCGA-C8-A274	RHOJ	SNP	Missense_Mutation	14	63757697	G	C	33	62
BRCA	TCGA-C8-A274	SYNE2	SNP	Missense_Mutation	14	64496652	G	A	45	53
BRCA	TCGA-C8-A274	SYNE2	SNP	Missense_Mutation	14	64595260	G	C	45	55
BRCA	TCGA-C8-A274	MTHFD1	SNP	Missense_Mutation	14	64879239	C	G	32	65
BRCA	TCGA-C8-A274	GABRA5	SNP	Silent	15	27160004	G	A	38	43
BRCA	TCGA-C8-A274	FAM96A	SNP	Missense_Mutation	15	64385865	C	G	32	89
BRCA	TCGA-C8-A274	IMP3	SNP	Missense_Mutation	15	75932283	G	A	37	66
BRCA	TCGA-C8-A274	PLK1	SNP	Silent	16	23690577	C	G	31	40
BRCA	TCGA-C8-A274	PRKCB	SNP	Silent	16	24104239	C	G	29	51
BRCA	TCGA-C8-A274	GTF3C1	SNP	Silent	16	27499930	G	C	45	62
BRCA	TCGA-C8-A274	SRCAP	SNP	Missense_Mutation	16	30735726	C	G	29	92
BRCA	TCGA-C8-A274	CDH8	SNP	Missense_Mutation	16	61935368	C	T	32	100
BRCA	TCGA-C8-A274	CDH1	INS	Frame_Shift_Ins	16	68856067	-	T	24	53
BRCA	TCGA-C8-A274	SRCIN1	SNP	Missense_Mutation	17	36719665	G	C	46	82
BRCA	TCGA-C8-A274	ERBB2	SNP	Missense_Mutation	17	37880257	C	G	32	68
BRCA	TCGA-C8-A274	PTRF	SNP	Silent	17	40556903	G	C	45	58
BRCA	TCGA-C8-A274	EPX	SNP	Missense_Mutation	17	56272352	C	T	27	57
BRCA	TCGA-C8-A274	CLTC	SNP	Missense_Mutation	17	57697514	C	T	31	77
BRCA	TCGA-C8-A274	ABCA5	SNP	Missense_Mutation	17	67286128	C	T	29	92
BRCA	TCGA-C8-A274	CD300LF	SNP	Missense_Mutation	17	72700695	C	T	29	79
BRCA	TCGA-C8-A274	EXOC7	SNP	Splice_site	17	74079730	C	T	29	54
BRCA	TCGA-C8-A274	OXLD1	SNP	Silent	17	79632282	G	A	45	61
BRCA	TCGA-C8-A274	WDR16	SNP	Missense_Mutation	17	9503393	G	A	45	84
BRCA	TCGA-C8-A274	NPC1	SNP	Silent	18	21119419	G	A	37	48
BRCA	TCGA-C8-A274	THOC1	SNP	Silent	18	226824	G	C	45	57
BRCA	TCGA-C8-A274	SMAD2	SNP	Missense_Mutation	18	45374910	G	C	33	65
BRCA	TCGA-C8-A274	MRPL4	SNP	Silent	19	10363300	C	T	31	48
BRCA	TCGA-C8-A274	CACNA1A	SNP	Missense_Mutation	19	13370494	C	G	32	52
BRCA	TCGA-C8-A274	TCF3	SNP	Missense_Mutation	19	1615425	G	A	38	72
BRCA	TCGA-C8-A274	TMEM59L	SNP	Missense_Mutation	19	18726791	G	T	44	57
BRCA	TCGA-C8-A274	RFXANK	SNP	Missense_Mutation	19	19304852	G	C	33	72
BRCA	TCGA-C8-A274	ZNF675	SNP	Missense_Mutation	19	23844973	C	T	30	56
BRCA	TCGA-C8-A274	SCGB2B2	SNP	Silent	19	35085448	G	T	35	51
BRCA	TCGA-C8-A274	ZNF540	DEL	In_Frame_Del	19	38103573	GAAGCCCTACGAATGTAAGGAATGTGG	-	45	50
BRCA	TCGA-C8-A274	CLPTM1	SNP	Missense_Mutation	19	45490529	G	A	37	76
BRCA	TCGA-C8-A274	PRR12	SNP	Missense_Mutation	19	50118164	G	A	39	91
BRCA	TCGA-C8-A274	AKT1S1	SNP	Splice_site	19	50373175	C	T	29	63
BRCA	TCGA-C8-A274	LILRA2	SNP	Missense_Mutation	19	55086371	T	A	58	43
BRCA	TCGA-C8-A274	ZNF304	SNP	Missense_Mutation	19	57869175	C	A	17	40
BRCA	TCGA-C8-A274	ZNF17	SNP	Missense_Mutation	19	57931692	G	C	45	51
BRCA	TCGA-C8-A274	STEAP3	SNP	Missense_Mutation	2	120020658	T	C	59	66
BRCA	TCGA-C8-A274	NEB	SNP	Missense_Mutation	2	152520097	C	G	29	96
BRCA	TCGA-C8-A274	IFIH1	SNP	Missense_Mutation	2	163174697	C	G	32	86
BRCA	TCGA-C8-A274	TTN	SNP	Silent	2	179423171	C	G	29	54
BRCA	TCGA-C8-A274	CERKL	SNP	Missense_Mutation	2	182403832	C	T	32	69
BRCA	TCGA-C8-A274	PMS1	SNP	Missense_Mutation	2	190742066	C	G	32	49
BRCA	TCGA-C8-A274	SLC39A10	SNP	Missense_Mutation	2	196545103	G	T	33	78
BRCA	TCGA-C8-A274	ALS2CR11	SNP	Missense_Mutation	2	202356492	C	T	29	48
BRCA	TCGA-C8-A274	ALS2CR11	SNP	Missense_Mutation	2	202357912	C	G	20	47
BRCA	TCGA-C8-A274	MAP4K3	SNP	Nonsense_Mutation	2	39553347	C	A	30	100
BRCA	TCGA-C8-A274	ZNF2	SNP	Missense_Mutation	2	95847133	C	T	29	60
BRCA	TCGA-C8-A274	SLC4A11	SNP	Silent	20	3211607	G	C	45	57
BRCA	TCGA-C8-A274	PIGU	SNP	Silent	20	33231980	G	A	45	90
BRCA	TCGA-C8-A274	GDAP1L1	SNP	Silent	20	42907676	C	G	29	96
BRCA	TCGA-C8-A274	NCOA3	SNP	Missense_Mutation	20	46255914	T	C	50	68
BRCA	TCGA-C8-A274	ZFP64	SNP	Missense_Mutation	20	50769283	G	C	43	100
BRCA	TCGA-C8-A274	RUNX1	INS	Frame_Shift_Ins	21	36252880	-	G	11	92
BRCA	TCGA-C8-A274	RUNX1	INS	Frame_Shift_Ins	21	36252994	-	C	50	92
BRCA	TCGA-C8-A274	TXNRD2	SNP	Missense_Mutation	22	19865914	C	T	31	81
BRCA	TCGA-C8-A274	PPIL2	SNP	Missense_Mutation	22	22041956	A	T	8	76
BRCA	TCGA-C8-A274	TMEM31	SNP	Missense_Mutation	23	102968633	G	A	45	52
BRCA	TCGA-C8-A274	LONRF3	SNP	Missense_Mutation	23	118123497	G	C	33	56
BRCA	TCGA-C8-A274	PGRMC1	SNP	Missense_Mutation	23	118370396	G	A	45	78
BRCA	TCGA-C8-A274	OCRL	SNP	Missense_Mutation	23	128723903	G	A	45	56
BRCA	TCGA-C8-A274	ATP11C	SNP	Splice_site	23	138878432	C	A	24	98
BRCA	TCGA-C8-A274	DMD	SNP	Silent	23	31496247	G	C	41	55
BRCA	TCGA-C8-A274	MAGEB16	SNP	Missense_Mutation	23	35820374	G	A	45	49
BRCA	TCGA-C8-A274	GPR143	SNP	Missense_Mutation	23	9693796	C	A	30	62
BRCA	TCGA-C8-A274	FANCD2	SNP	Nonsense_Mutation	3	10089640	C	T	29	88
BRCA	TCGA-C8-A274	VGLL4	SNP	Splice_site	3	11623773	T	C	52	78
BRCA	TCGA-C8-A274	ACPP	SNP	Missense_Mutation	3	132050535	G	C	33	49
BRCA	TCGA-C8-A274	IGSF10	SNP	Silent	3	151165429	G	T	43	44
BRCA	TCGA-C8-A274	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-C8-A274	TRANK1	SNP	Silent	3	36872506	C	T	25	51
BRCA	TCGA-C8-A274	LRRFIP2	SNP	Silent	3	37114317	G	A	41	54
BRCA	TCGA-C8-A274	SCN11A	SNP	Missense_Mutation	3	38913709	G	A	38	98
BRCA	TCGA-C8-A274	ZNF167	SNP	Silent	3	44612804	T	C	61	46
BRCA	TCGA-C8-A274	SETD2	SNP	Missense_Mutation	3	47144879	C	A	19	96
BRCA	TCGA-C8-A274	ANAPC10	SNP	Missense_Mutation	4	145985831	C	T	20	97
BRCA	TCGA-C8-A274	TIGD4	SNP	Silent	4	153691716	T	C	60	53
BRCA	TCGA-C8-A274	FGA	SNP	Missense_Mutation	4	155507948	G	T	36	50
BRCA	TCGA-C8-A274	FBXL5	SNP	Silent	4	15640233	G	C	45	87
BRCA	TCGA-C8-A274	HMGB2	SNP	Missense_Mutation	4	174254097	C	T	29	99
BRCA	TCGA-C8-A274	PPARGC1A	SNP	Missense_Mutation	4	23814411	C	G	29	97
BRCA	TCGA-C8-A274	DCAF4L1	SNP	Silent	4	41984214	G	A	45	51
BRCA	TCGA-C8-A274	GC	SNP	Missense_Mutation	4	72631239	T	G	59	79
BRCA	TCGA-C8-A274	SDAD1	SNP	Silent	4	76878697	A	T	5	44
BRCA	TCGA-C8-A274	PTPN13	SNP	Silent	4	87691103	G	A	45	59
BRCA	TCGA-C8-A274	MMRN1	SNP	Missense_Mutation	4	90857679	A	G	1	61
BRCA	TCGA-C8-A274	SNX2	SNP	Missense_Mutation	5	122153033	A	C	8	78
BRCA	TCGA-C8-A274	DOCK2	SNP	Missense_Mutation	5	169461520	G	C	33	57
BRCA	TCGA-C8-A274	CDH12	SNP	Missense_Mutation	5	21842404	C	T	32	100
BRCA	TCGA-C8-A274	GFM2	SNP	Missense_Mutation	5	74047198	G	A	48	100
BRCA	TCGA-C8-A274	CMYA5	SNP	Missense_Mutation	5	79057687	G	A	33	96
BRCA	TCGA-C8-A274	MCTP1	SNP	Missense_Mutation	5	94267685	C	T	29	88
BRCA	TCGA-C8-A274	RHOBTB3	SNP	Nonsense_Mutation	5	95084070	C	G	29	73
BRCA	TCGA-C8-A274	REV3L	SNP	Missense_Mutation	6	111696566	C	T	32	82
BRCA	TCGA-C8-A274	DSE	SNP	Missense_Mutation	6	116757178	A	G	10	68
BRCA	TCGA-C8-A274	TAAR6	SNP	Missense_Mutation	6	132892456	G	C	33	52
BRCA	TCGA-C8-A274	CCDC170	SNP	Nonsense_Mutation	6	151857537	G	T	45	87
BRCA	TCGA-C8-A274	SYNE1	SNP	Missense_Mutation	6	152804231	C	G	29	99
BRCA	TCGA-C8-A274	FNDC1	SNP	Silent	6	159660685	C	A	29	49
BRCA	TCGA-C8-A274	HIST1H3B	SNP	Silent	6	26032136	C	T	32	98
BRCA	TCGA-C8-A274	MRPL2	SNP	Missense_Mutation	6	43022095	C	T	22	98
BRCA	TCGA-C8-A274	KCNQ5	SNP	Missense_Mutation	6	73904286	G	A	45	97
BRCA	TCGA-C8-A274	SLC26A3	SNP	Missense_Mutation	7	107431617	A	T	10	51
BRCA	TCGA-C8-A274	PDIA4	SNP	Missense_Mutation	7	148718177	C	T	29	88
BRCA	TCGA-C8-A274	INTS1	SNP	Missense_Mutation	7	1542644	G	A	41	93
BRCA	TCGA-C8-A274	INTS1	SNP	Missense_Mutation	7	1542722	G	C	33	92
BRCA	TCGA-C8-A274	NPC1L1	SNP	Missense_Mutation	7	44553138	C	G	29	44
BRCA	TCGA-C8-A274	SMURF1	SNP	Missense_Mutation	7	98648569	A	G	4	71
BRCA	TCGA-C8-A274	CSMD3	SNP	Missense_Mutation	8	113266484	G	C	45	83
BRCA	TCGA-C8-A274	ZFP41	SNP	Missense_Mutation	8	144332515	G	C	41	88
BRCA	TCGA-C8-A274	SLC52A2	SNP	Missense_Mutation	8	145583494	C	G	32	57
BRCA	TCGA-C8-A274	ADAM28	SNP	Missense_Mutation	8	24209527	G	T	45	55
BRCA	TCGA-C8-A274	MCM4	SNP	Missense_Mutation	8	48875562	G	C	45	84
BRCA	TCGA-C8-A274	WWP1	SNP	Splice_Site	8	87437451	G	A	35	95
BRCA	TCGA-C8-A274	WWP1	SNP	Nonsense_Mutation	8	87464813	C	T	31	100
BRCA	TCGA-C8-A274	PALM2	SNP	Missense_Mutation	9	112705364	G	A	38	47
BRCA	TCGA-C8-A274	PALM2	SNP	Missense_Mutation	9	112705539	C	T	19	100
BRCA	TCGA-C8-A274	C9orf78	SNP	Silent	9	132595746	C	T	29	50
BRCA	TCGA-C8-A274	RAPGEF1	SNP	Silent	9	134503379	G	A	45	51
BRCA	TCGA-C8-A274	ROR2	SNP	Missense_Mutation	9	94487223	C	T	23	82
BRCA	TCGA-C8-A275	SLC30A7	SNP	Missense_Mutation	1	101376704	G	C	45	100
BRCA	TCGA-C8-A275	LRIF1	SNP	Missense_Mutation	1	111495184	G	C	33	58
BRCA	TCGA-C8-A275	WNT2B	SNP	Silent	1	113057694	C	T	32	57
BRCA	TCGA-C8-A275	PRAMEF2	SNP	Nonsense_Mutation	1	12919911	G	A	42	56
BRCA	TCGA-C8-A275	PRDM2	INS	In_Frame_Ins	1	14105121	-	GAA	51	50
BRCA	TCGA-C8-A275	RAB25	SNP	Silent	1	156039538	G	T	45	57
BRCA	TCGA-C8-A275	FCRL5	SNP	Missense_Mutation	1	157514217	G	A	39	39
BRCA	TCGA-C8-A275	CD1E	SNP	Silent	1	158324193	C	T	32	46
BRCA	TCGA-C8-A275	EGLN1	SNP	Silent	1	231557515	G	A	33	70
BRCA	TCGA-C8-A275	KIAA1383	SNP	Missense_Mutation	1	232943549	A	G	12	51
BRCA	TCGA-C8-A275	HNRNPR	SNP	Silent	1	23660097	G	A	33	62
BRCA	TCGA-C8-A275	DOCK7	SNP	Missense_Mutation	1	62923257	C	T	32	88
BRCA	TCGA-C8-A275	COL24A1	SNP	Missense_Mutation	1	86437030	C	G	30	77
BRCA	TCGA-C8-A275	BTRC	SNP	Missense_Mutation	10	103292145	G	A	45	100
BRCA	TCGA-C8-A275	ADAM12	SNP	Missense_Mutation	10	127726840	C	T	29	50
BRCA	TCGA-C8-A275	ENKUR	SNP	Missense_Mutation	10	25273745	C	G	32	53
BRCA	TCGA-C8-A275	MYO3A	SNP	Missense_Mutation	10	26310566	C	G	29	68
BRCA	TCGA-C8-A275	KIAA0913	SNP	Missense_Mutation	10	75552020	C	G	32	45
BRCA	TCGA-C8-A275	PLAU	SNP	Missense_Mutation	10	75671664	G	C	45	60
BRCA	TCGA-C8-A275	PIK3C2A	SNP	Silent	11	17124376	A	G	3	52
BRCA	TCGA-C8-A275	NELL1	SNP	Silent	11	20940827	C	T	24	67
BRCA	TCGA-C8-A275	ZBTB3	SNP	Missense_Mutation	11	62520917	G	T	43	70
BRCA	TCGA-C8-A275	PARPBP	SNP	Missense_Mutation	12	102569284	C	T	29	88
BRCA	TCGA-C8-A275	HECTD4	SNP	Missense_Mutation	12	112686210	C	G	32	99
BRCA	TCGA-C8-A275	SLC15A5	SNP	Missense_Mutation	12	16425679	C	T	32	83
BRCA	TCGA-C8-A275	TMTC1	SNP	Nonsense_Mutation	12	29709842	G	A	47	71
BRCA	TCGA-C8-A275	ANO6	SNP	Missense_Mutation	12	45741997	G	C	33	98
BRCA	TCGA-C8-A275	PPFIA2	SNP	Silent	12	81657056	A	G	13	54
BRCA	TCGA-C8-A275	DYNC1H1	SNP	Silent	14	102474586	G	A	47	64
BRCA	TCGA-C8-A275	OR4Q3	SNP	Nonsense_Mutation	14	20215639	C	G	29	80
BRCA	TCGA-C8-A275	PPP2R3C	SNP	Missense_Mutation	14	35579802	A	C	4	67
BRCA	TCGA-C8-A275	MAP3K9	SNP	Missense_Mutation	14	71199275	C	G	29	57
BRCA	TCGA-C8-A275	PLA2G4E	SNP	Silent	15	42292464	C	T	29	64
BRCA	TCGA-C8-A275	BNC1	SNP	Silent	15	83933256	G	A	45	76
BRCA	TCGA-C8-A275	SYNM	SNP	Missense_Mutation	15	99666992	C	G	23	64
BRCA	TCGA-C8-A275	ERN2	SNP	Missense_Mutation	16	23702226	C	G	29	74
BRCA	TCGA-C8-A275	ITGAM	SNP	Missense_Mutation	16	31341642	C	T	28	77
BRCA	TCGA-C8-A275	SAMD14	SNP	Missense_Mutation	17	48195601	C	G	23	73
BRCA	TCGA-C8-A275	AKAP1	SNP	Missense_Mutation	17	55183786	G	C	45	55
BRCA	TCGA-C8-A275	MPO	SNP	Missense_Mutation	17	56350265	T	C	51	49
BRCA	TCGA-C8-A275	YPEL2	SNP	Silent	17	57430827	G	A	41	50
BRCA	TCGA-C8-A275	CACNG4	SNP	Silent	17	65026607	C	T	31	52
BRCA	TCGA-C8-A275	FAM20A	SNP	Missense_Mutation	17	66538848	G	C	33	89
BRCA	TCGA-C8-A275	ACAP1	SNP	Missense_Mutation	17	7247037	G	C	45	66
BRCA	TCGA-C8-A275	TP53	SNP	Missense_Mutation	17	7577141	C	T	30	95
BRCA	TCGA-C8-A275	LOXHD1	SNP	Missense_Mutation	18	44190796	C	T	29	54
BRCA	TCGA-C8-A275	CCDC151	SNP	Missense_Mutation	19	11537068	C	G	32	68
BRCA	TCGA-C8-A275	ZNF799	SNP	Missense_Mutation	19	12501963	C	T	25	55
BRCA	TCGA-C8-A275	PDE4C	SNP	Missense_Mutation	19	18322678	G	A	40	94
BRCA	TCGA-C8-A275	ZNF554	SNP	Nonsense_Mutation	19	2834599	C	T	27	53
BRCA	TCGA-C8-A275	ZNF569	SNP	Missense_Mutation	19	37904775	C	G	32	58
BRCA	TCGA-C8-A275	FAM98C	SNP	Silent	19	38895681	C	G	30	47
BRCA	TCGA-C8-A275	PSG5	SNP	Silent	19	43690498	G	A	45	47
BRCA	TCGA-C8-A275	PHLDB3	SNP	Missense_Mutation	19	44006383	G	C	33	53
BRCA	TCGA-C8-A275	CCDC8	SNP	Missense_Mutation	19	46914605	C	A	21	76
BRCA	TCGA-C8-A275	NLRP12	SNP	Missense_Mutation	19	54304506	G	T	41	68
BRCA	TCGA-C8-A275	NLRP12	SNP	Silent	19	54310781	G	C	45	53
BRCA	TCGA-C8-A275	OR2Z1	SNP	Silent	19	8841852	C	G	29	51
BRCA	TCGA-C8-A275	TBC1D8	SNP	Silent	2	101646084	C	T	29	60
BRCA	TCGA-C8-A275	LCT	SNP	Missense_Mutation	2	136562528	C	T	26	67
BRCA	TCGA-C8-A275	SCN7A	SNP	Missense_Mutation	2	167330816	T	A	50	51
BRCA	TCGA-C8-A275	ZAK	SNP	Missense_Mutation	2	173955764	C	T	31	67
BRCA	TCGA-C8-A275	CFLAR	SNP	Silent	2	201997758	G	T	45	53
BRCA	TCGA-C8-A275	ITSN2	SNP	Missense_Mutation	2	24433779	G	T	41	52
BRCA	TCGA-C8-A275	ADCY3	DEL	Frame_Shift_Del	2	25042837	AG	-	7	27
BRCA	TCGA-C8-A275	WDR43	SNP	Silent	2	29169540	C	T	23	43
BRCA	TCGA-C8-A275	SPTLC3	SNP	Silent	20	13029712	C	G	29	54
BRCA	TCGA-C8-A275	RIN2	SNP	Silent	20	19956130	C	T	31	49
BRCA	TCGA-C8-A275	GGTLC1	SNP	Missense_Mutation	20	23966380	T	G	56	73
BRCA	TCGA-C8-A275	NRIP1	SNP	Missense_Mutation	21	16337186	G	A	41	62
BRCA	TCGA-C8-A275	PCNT	SNP	Silent	21	47819692	C	T	31	40
BRCA	TCGA-C8-A275	RRP7A	SNP	Silent	22	42910724	G	A	48	57
BRCA	TCGA-C8-A275	SMC1B	SNP	Missense_Mutation	22	45755687	C	T	30	82
BRCA	TCGA-C8-A275	PKDREJ	SNP	Silent	22	46653441	G	A	33	53
BRCA	TCGA-C8-A275	PKDREJ	SNP	Missense_Mutation	22	46655016	G	C	33	45
BRCA	TCGA-C8-A275	FGF13	SNP	Missense_Mutation	23	137715074	C	G	32	61
BRCA	TCGA-C8-A275	MAGEC3	SNP	Missense_Mutation	23	140983304	G	A	37	41
BRCA	TCGA-C8-A275	HCFC1	SNP	Missense_Mutation	23	153223547	C	G	20	75
BRCA	TCGA-C8-A275	OPN1LW	SNP	Missense_Mutation	23	153418542	C	G	32	80
BRCA	TCGA-C8-A275	DMD	SNP	Missense_Mutation	23	32380914	C	G	32	60
BRCA	TCGA-C8-A275	CFP	SNP	Missense_Mutation	23	47485763	C	T	30	61
BRCA	TCGA-C8-A275	GNL3L	SNP	Missense_Mutation	23	54574726	G	C	41	88
BRCA	TCGA-C8-A275	AWAT1	SNP	Missense_Mutation	23	69459634	C	G	29	92
BRCA	TCGA-C8-A275	SLC7A3	SNP	Missense_Mutation	23	70148349	C	T	32	51
BRCA	TCGA-C8-A275	ACRC	SNP	Missense_Mutation	23	70832261	G	C	45	53
BRCA	TCGA-C8-A275	CXCR3	SNP	Missense_Mutation	23	70837215	G	A	37	43
BRCA	TCGA-C8-A275	PCDH19	SNP	Missense_Mutation	23	99551396	G	C	33	82
BRCA	TCGA-C8-A275	WDR52	SNP	Splice_Site	3	113152517	C	G	32	59
BRCA	TCGA-C8-A275	ATG7	SNP	Missense_Mutation	3	11421470	G	C	45	92
BRCA	TCGA-C8-A275	HTR3D	SNP	Missense_Mutation	3	183754563	G	T	34	50
BRCA	TCGA-C8-A275	EHHADH	SNP	Missense_Mutation	3	184910418	G	A	45	60
BRCA	TCGA-C8-A275	FETUB	SNP	Splice_site	3	186370419	G	A	45	57
BRCA	TCGA-C8-A275	SCN10A	SNP	Missense_Mutation	3	38768498	C	T	29	95
BRCA	TCGA-C8-A275	C4orf45	SNP	Missense_Mutation	4	159894264	G	T	48	53
BRCA	TCGA-C8-A275	PRKG2	SNP	Silent	4	82027041	G	C	45	52
BRCA	TCGA-C8-A275	TRIO	SNP	Missense_Mutation	5	14290927	G	A	45	85
BRCA	TCGA-C8-A275	STK32A	SNP	Missense_Mutation	5	146703558	G	A	41	100
BRCA	TCGA-C8-A275	ADRB2	SNP	Missense_Mutation	5	148206482	G	A	37	78
BRCA	TCGA-C8-A275	FAM71B	SNP	Missense_Mutation	5	156593170	C	T	29	75
BRCA	TCGA-C8-A275	DOCK2	SNP	Silent	5	169145739	G	A	45	54
BRCA	TCGA-C8-A275	RANBP17	SNP	Missense_Mutation	5	170319487	G	T	43	98
BRCA	TCGA-C8-A275	SREK1	SNP	Missense_Mutation	5	65459733	C	T	29	97
BRCA	TCGA-C8-A275	SIM1	SNP	Missense_Mutation	6	100896383	C	G	30	100
BRCA	TCGA-C8-A275	UTRN	SNP	Missense_Mutation	6	144844314	G	A	45	82
BRCA	TCGA-C8-A275	SLC35B2	SNP	Missense_Mutation	6	44224198	C	T	17	96
BRCA	TCGA-C8-A275	LRRC1	SNP	Missense_Mutation	6	53764633	C	T	29	98
BRCA	TCGA-C8-A275	IBTK	SNP	Missense_Mutation	6	82906055	G	A	41	97
BRCA	TCGA-C8-A275	MDN1	SNP	Missense_Mutation	6	90400436	C	T	30	82
BRCA	TCGA-C8-A275	LAMB4	SNP	Missense_Mutation	7	107669499	C	T	32	50
BRCA	TCGA-C8-A275	MRPS33	SNP	Missense_Mutation	7	140706249	C	G	32	97
BRCA	TCGA-C8-A275	STEAP1B	SNP	Missense_Mutation	7	22478332	C	T	26	45
BRCA	TCGA-C8-A275	FAM20C	SNP	Missense_Mutation	7	298645	C	G	30	48
BRCA	TCGA-C8-A275	GBAS	SNP	Silent	7	56051543	C	G	29	53
BRCA	TCGA-C8-A275	KAT6A	SNP	Missense_Mutation	8	41791830	T	C	50	76
BRCA	TCGA-C8-A275	FAM82B	SNP	Silent	8	87489536	G	A	48	50
BRCA	TCGA-C8-A275	GABBR2	SNP	Silent	9	101073404	G	A	37	46
BRCA	TCGA-C8-A275	ZFP37	SNP	Missense_Mutation	9	115806009	G	C	45	50
BRCA	TCGA-C8-A275	NCS1	SNP	Missense_Mutation	9	132982059	G	A	41	95
BRCA	TCGA-C8-A275	RALGDS	SNP	Missense_Mutation	9	135977080	A	G	10	77
BRCA	TCGA-C8-A275	ADAMTS13	SNP	Missense_Mutation	9	136291377	G	A	39	78
BRCA	TCGA-C8-A275	FCN2	SNP	Silent	9	137772751	G	A	39	43
BRCA	TCGA-C8-A275	NOXA1	SNP	Missense_Mutation	9	140328693	G	C	41	65
BRCA	TCGA-C8-A275	NUDT2	SNP	Missense_Mutation	9	34343328	C	G	21	78
BRCA	TCGA-C8-A275	TJP2	SNP	Missense_Mutation	9	71855021	C	G	29	100
BRCA	TCGA-C8-A275	GDA	SNP	Silent	9	74810496	G	C	45	50
BRCA	TCGA-C8-A278	GBA	SNP	Missense_Mutation	1	155207291	C	G	29	36
BRCA	TCGA-C8-A278	PHC2	SNP	Missense_Mutation	1	33797902	G	A	37	92
BRCA	TCGA-C8-A278	CALML5	SNP	Missense_Mutation	10	5541283	G	A	40	65
BRCA	TCGA-C8-A278	PANK1	SNP	Missense_Mutation	10	91353062	C	T	29	86
BRCA	TCGA-C8-A278	NDFIP2	SNP	Silent	13	80113888	C	A	25	48
BRCA	TCGA-C8-A278	C14orf80	SNP	Missense_Mutation	14	105960224	C	T	32	68
BRCA	TCGA-C8-A278	RIPK3	SNP	Missense_Mutation	14	24808688	C	T	31	79
BRCA	TCGA-C8-A278	ZC3H7A	SNP	Splice_site	16	11856527	C	G	24	84
BRCA	TCGA-C8-A278	SRL	SNP	Missense_Mutation	16	4245638	T	G	51	79
BRCA	TCGA-C8-A278	KRT28	SNP	Missense_Mutation	17	38950160	A	G	14	64
BRCA	TCGA-C8-A278	CNP	SNP	Silent	17	40125630	A	C	6	30
BRCA	TCGA-C8-A278	SNF8	SNP	Missense_Mutation	17	47009050	G	C	45	74
BRCA	TCGA-C8-A278	TP53	SNP	Missense_Mutation	17	7578427	T	G	59	58
BRCA	TCGA-C8-A278	FOXA3	SNP	Missense_Mutation	19	46376150	C	T	27	62
BRCA	TCGA-C8-A278	SIGLEC7	SNP	Missense_Mutation	19	51656410	G	T	46	55
BRCA	TCGA-C8-A278	TTN	SNP	Silent	2	179598483	G	A	40	51
BRCA	TCGA-C8-A278	SEPT2	SNP	Missense_Mutation	2	242289558	G	T	42	65
BRCA	TCGA-C8-A278	C2orf56	SNP	Missense_Mutation	2	37458853	G	A	36	52
BRCA	TCGA-C8-A278	TASP1	SNP	Silent	20	13415695	A	G	9	53
BRCA	TCGA-C8-A278	RRBP1	SNP	Missense_Mutation	20	17639834	T	C	56	56
BRCA	TCGA-C8-A278	ANGPT4	SNP	Missense_Mutation	20	858964	C	T	23	99
BRCA	TCGA-C8-A278	CHADL	SNP	Missense_Mutation	22	41632585	G	A	37	60
BRCA	TCGA-C8-A278	RABL2B	SNP	Missense_Mutation	22	51220689	C	G	30	78
BRCA	TCGA-C8-A278	RAB40A	SNP	Missense_Mutation	23	102755198	T	G	51	54
BRCA	TCGA-C8-A278	PIK3CA	SNP	Missense_Mutation	3	178952063	A	G	8	91
BRCA	TCGA-C8-A278	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-C8-A278	MUC4	SNP	Missense_Mutation	3	195506293	T	C	52	47
BRCA	TCGA-C8-A278	MUC4	SNP	Missense_Mutation	3	195506339	T	G	59	33
BRCA	TCGA-C8-A278	PDS5A	SNP	Silent	4	39881426	T	G	63	46
BRCA	TCGA-C8-A278	EXOC2	SNP	Splice_site	6	497489	C	T	18	85
BRCA	TCGA-C8-A278	HERPUD2	SNP	Missense_Mutation	7	35712884	G	A	40	87
BRCA	TCGA-C8-A278	GOLGA2	DEL	In_Frame_Del	9	131020796	CCT	-	26	53
BRCA	TCGA-C8-A27A	CDC123	SNP	Missense_Mutation	10	12259451	G	A	40	64
BRCA	TCGA-C8-A27A	PGR	SNP	Missense_Mutation	11	100962590	A	G	8	93
BRCA	TCGA-C8-A27A	FBXW8	SNP	Silent	12	117448250	C	T	19	67
BRCA	TCGA-C8-A27A	SLC6A15	SNP	Missense_Mutation	12	85270296	G	A	37	79
BRCA	TCGA-C8-A27A	MCF2L	SNP	Missense_Mutation	13	113750743	G	A	38	50
BRCA	TCGA-C8-A27A	RTL1	SNP	Silent	14	101349800	G	A	37	43
BRCA	TCGA-C8-A27A	LGALS9	SNP	Missense_Mutation	17	25965319	G	A	35	61
BRCA	TCGA-C8-A27A	TP53	SNP	Missense_Mutation	17	7578253	C	A	30	96
BRCA	TCGA-C8-A27A	DSG1	SNP	Missense_Mutation	18	28934500	G	A	45	88
BRCA	TCGA-C8-A27A	PPAN-P2RY11	SNP	Missense_Mutation	19	10224638	G	C	40	50
BRCA	TCGA-C8-A27A	DMKN	SNP	Missense_Mutation	19	36002404	C	T	28	50
BRCA	TCGA-C8-A27A	FCAR	SNP	Missense_Mutation	19	55396901	T	A	52	56
BRCA	TCGA-C8-A27A	NCL	SNP	Missense_Mutation	2	232320764	G	A	37	53
BRCA	TCGA-C8-A27A	UGT1A10	SNP	Missense_Mutation	2	234545248	A	T	3	55
BRCA	TCGA-C8-A27A	RALGAPA2	SNP	Silent	20	20527462	C	T	31	49
BRCA	TCGA-C8-A27A	MED12	SNP	Missense_Mutation	23	70344921	G	T	33	62
BRCA	TCGA-C8-A27A	ALCAM	SNP	Missense_Mutation	3	105238944	G	A	41	86
BRCA	TCGA-C8-A27A	FILIP1L	SNP	Silent	3	99568867	G	A	39	42
BRCA	TCGA-C8-A27A	EPB41L4A	SNP	Silent	5	111615976	C	T	29	50
BRCA	TCGA-C8-A27A	UIMC1	SNP	Missense_Mutation	5	176396604	T	C	62	59
BRCA	TCGA-C8-A27A	TNXB	SNP	Missense_Mutation	6	32029275	A	G	10	54
BRCA	TCGA-C8-A27A	ASIC3	SNP	Missense_Mutation	7	150746033	G	A	38	94
BRCA	TCGA-C8-A27A	HOXA13	SNP	Silent	7	27239130	G	A	40	76
BRCA	TCGA-C8-A27A	TFPI2	SNP	Silent	7	93519525	C	A	17	43
BRCA	TCGA-C8-A27A	ARHGEF10	SNP	Missense_Mutation	8	1833860	T	C	61	83
BRCA	TCGA-C8-A27A	C8orf34	SNP	Silent	8	69381036	C	G	22	67
BRCA	TCGA-C8-A27A	POP1	SNP	Nonsense_Mutation	8	99168386	C	G	19	43
BRCA	TCGA-C8-A27A	RAPGEF1	SNP	Silent	9	134501721	C	T	19	41
BRCA	TCGA-C8-A27A	PRUNE2	SNP	Missense_Mutation	9	79319916	C	G	32	59
BRCA	TCGA-C8-A27B	ADAMTSL4	SNP	Missense_Mutation	1	150525701	G	A	41	72
BRCA	TCGA-C8-A27B	CERS2	SNP	Missense_Mutation	1	150940918	C	T	27	73
BRCA	TCGA-C8-A27B	SPRR1A	SNP	Silent	1	152957724	G	A	33	64
BRCA	TCGA-C8-A27B	ASH1L	SNP	Missense_Mutation	1	155450828	C	G	29	63
BRCA	TCGA-C8-A27B	SMG5	SNP	Missense_Mutation	1	156236117	G	T	35	56
BRCA	TCGA-C8-A27B	ADCY10	SNP	Silent	1	167865858	A	G	4	48
BRCA	TCGA-C8-A27B	PRG4	SNP	Missense_Mutation	1	186266033	A	C	14	56
BRCA	TCGA-C8-A27B	KLHDC7A	SNP	Missense_Mutation	1	18808277	G	C	40	52
BRCA	TCGA-C8-A27B	KIAA1383	DEL	Frame_Shift_Del	1	232940918	CTCACTGT	-	20	45
BRCA	TCGA-C8-A27B	SCMH1	SNP	Missense_Mutation	1	41499688	T	C	49	52
BRCA	TCGA-C8-A27B	SLC1A7	SNP	Missense_Mutation	1	53556433	G	C	44	71
BRCA	TCGA-C8-A27B	GBP4	SNP	Missense_Mutation	1	89658731	C	G	29	64
BRCA	TCGA-C8-A27B	DNTTIP2	SNP	Missense_Mutation	1	94343060	T	A	62	76
BRCA	TCGA-C8-A27B	LOXL4	SNP	Missense_Mutation	10	100017441	C	G	24	87
BRCA	TCGA-C8-A27B	DMBT1	SNP	Missense_Mutation	10	124389917	C	G	32	83
BRCA	TCGA-C8-A27B	AGAP5	SNP	Missense_Mutation	10	75435124	C	G	30	76
BRCA	TCGA-C8-A27B	TSPAN14	SNP	Silent	10	82264498	C	G	32	55
BRCA	TCGA-C8-A27B	KBTBD3	SNP	Missense_Mutation	11	105929688	C	G	32	98
BRCA	TCGA-C8-A27B	MLL	SNP	Missense_Mutation	11	118344879	C	G	30	95
BRCA	TCGA-C8-A27B	IGF2-AS	SNP	Missense_Mutation	11	2167538	C	T	28	51
BRCA	TCGA-C8-A27B	WT1	SNP	Missense_Mutation	11	32410657	G	A	39	100
BRCA	TCGA-C8-A27B	CRY2	SNP	Missense_Mutation	11	45891248	G	C	41	100
BRCA	TCGA-C8-A27B	NUP160	SNP	Missense_Mutation	11	47814408	G	A	34	96
BRCA	TCGA-C8-A27B	OR5M11	SNP	Silent	11	56310392	C	A	21	56
BRCA	TCGA-C8-A27B	SLC43A3	SNP	Missense_Mutation	11	57177571	G	A	35	71
BRCA	TCGA-C8-A27B	ANO1	SNP	Missense_Mutation	11	69950207	C	G	21	70
BRCA	TCGA-C8-A27B	UCP3	SNP	Missense_Mutation	11	73718048	C	T	26	50
BRCA	TCGA-C8-A27B	MYO7A	SNP	Missense_Mutation	11	76903310	A	G	14	90
BRCA	TCGA-C8-A27B	MYBPC1	SNP	Missense_Mutation	12	102056175	G	C	47	99
BRCA	TCGA-C8-A27B	FAM186B	SNP	Missense_Mutation	12	49994357	C	G	30	54
BRCA	TCGA-C8-A27B	PAN2	SNP	Missense_Mutation	12	56721845	C	G	32	52
BRCA	TCGA-C8-A27B	CHD4	SNP	Missense_Mutation	12	6710551	C	G	28	82
BRCA	TCGA-C8-A27B	CHD4	SNP	Missense_Mutation	12	6711295	G	T	47	61
BRCA	TCGA-C8-A27B	CD4	DEL	Splice_site	12	6924157	AGGTAAGGGA	-	15	52
BRCA	TCGA-C8-A27B	RNF17	SNP	Missense_Mutation	13	25428135	A	G	9	54
BRCA	TCGA-C8-A27B	POLR1D	SNP	Missense_Mutation	13	28239878	A	C	1	82
BRCA	TCGA-C8-A27B	POLR1D	DEL	In_Frame_Del	13	28239894	ATA	-	8	69
BRCA	TCGA-C8-A27B	SPG20	SNP	Missense_Mutation	13	36909960	T	G	63	68
BRCA	TCGA-C8-A27B	CCNA1	DEL	In_Frame_Del	13	37011769	ATCACAAGA	-	12	42
BRCA	TCGA-C8-A27B	STOML3	SNP	Missense_Mutation	13	39542611	C	G	32	99
BRCA	TCGA-C8-A27B	RTN1	DEL	In_Frame_Del	14	60212735	CTC	-	20	50
BRCA	TCGA-C8-A27B	MEIS2	SNP	Missense_Mutation	15	37390202	C	T	31	86
BRCA	TCGA-C8-A27B	SLC24A5	SNP	Silent	15	48413271	G	A	37	46
BRCA	TCGA-C8-A27B	CLPX	SNP	Missense_Mutation	15	65471352	G	C	33	95
BRCA	TCGA-C8-A27B	UACA	DEL	Frame_Shift_Del	15	70979933	CATATTGTTGGCCTACT	-	17	96
BRCA	TCGA-C8-A27B	NEO1	SNP	Missense_Mutation	15	73428353	G	C	33	86
BRCA	TCGA-C8-A27B	MORF4L1	SNP	Missense_Mutation	15	79178563	C	G	26	93
BRCA	TCGA-C8-A27B	SH3GL3	SNP	Nonsense_Mutation	15	84241415	C	T	29	99
BRCA	TCGA-C8-A27B	FANCI	SNP	Silent	15	89838218	G	C	45	56
BRCA	TCGA-C8-A27B	TTC23	SNP	Missense_Mutation	15	99759224	C	G	32	74
BRCA	TCGA-C8-A27B	ABCA3	SNP	Silent	16	2339579	G	T	41	55
BRCA	TCGA-C8-A27B	MYH13	SNP	Missense_Mutation	17	10222306	C	T	24	82
BRCA	TCGA-C8-A27B	SUPT6H	SNP	Missense_Mutation	17	27022374	G	C	41	98
BRCA	TCGA-C8-A27B	SLFN14	SNP	Missense_Mutation	17	33884544	C	G	32	72
BRCA	TCGA-C8-A27B	ACLY	SNP	Missense_Mutation	17	40030139	C	G	26	100
BRCA	TCGA-C8-A27B	ACLY	SNP	Missense_Mutation	17	40030212	C	G	21	80
BRCA	TCGA-C8-A27B	NPEPPS	SNP	Missense_Mutation	17	45689957	C	G	32	86
BRCA	TCGA-C8-A27B	EFCAB3	SNP	Missense_Mutation	17	60484535	G	C	45	79
BRCA	TCGA-C8-A27B	TP53	SNP	Missense_Mutation	17	7578271	T	C	51	76
BRCA	TCGA-C8-A27B	ABR	SNP	Silent	17	953383	C	T	30	59
BRCA	TCGA-C8-A27B	ZNF519	SNP	Missense_Mutation	18	14105980	C	G	29	64
BRCA	TCGA-C8-A27B	ANKRD29	SNP	Missense_Mutation	18	21197771	C	G	29	51
BRCA	TCGA-C8-A27B	TXNDC2	SNP	Missense_Mutation	18	9887863	C	A	20	71
BRCA	TCGA-C8-A27B	RPL18A	SNP	Missense_Mutation	19	17972952	G	A	38	79
BRCA	TCGA-C8-A27B	ZNF43	SNP	Missense_Mutation	19	21992075	T	C	57	64
BRCA	TCGA-C8-A27B	FEM1A	SNP	Missense_Mutation	19	4793084	C	G	31	52
BRCA	TCGA-C8-A27B	FUT6	SNP	Missense_Mutation	19	5832255	G	C	44	47
BRCA	TCGA-C8-A27B	ZNF587	SNP	Missense_Mutation	19	58371075	G	C	43	70
BRCA	TCGA-C8-A27B	ACSBG2	SNP	Missense_Mutation	19	6183146	C	G	29	56
BRCA	TCGA-C8-A27B	ZNF121	SNP	Silent	19	9677204	A	G	7	51
BRCA	TCGA-C8-A27B	IL1RL2	SNP	Missense_Mutation	2	102805699	C	G	18	61
BRCA	TCGA-C8-A27B	C2orf49	SNP	Missense_Mutation	2	105954138	G	A	41	86
BRCA	TCGA-C8-A27B	DGKD	SNP	Silent	2	234357967	G	A	45	53
BRCA	TCGA-C8-A27B	NCOA1	SNP	Missense_Mutation	2	24991255	G	A	45	98
BRCA	TCGA-C8-A27B	EFEMP1	SNP	Silent	2	56145044	T	G	55	14
BRCA	TCGA-C8-A27B	SPR	SNP	Silent	2	73115498	G	A	45	57
BRCA	TCGA-C8-A27B	RAD21L1	SNP	Missense_Mutation	20	1234974	G	A	37	58
BRCA	TCGA-C8-A27B	DNMT3B	SNP	Missense_Mutation	20	31374344	G	A	41	72
BRCA	TCGA-C8-A27B	SLC25A1	SNP	Missense_Mutation	22	19164129	C	T	21	100
BRCA	TCGA-C8-A27B	SLC25A1	SNP	Silent	22	19164682	G	C	47	49
BRCA	TCGA-C8-A27B	ADORA2A	SNP	Missense_Mutation	22	24837096	G	C	38	84
BRCA	TCGA-C8-A27B	PRR14L	SNP	Silent	22	32109100	T	G	50	47
BRCA	TCGA-C8-A27B	RPL3	SNP	Silent	22	39711522	C	G	29	57
BRCA	TCGA-C8-A27B	EP300	SNP	Missense_Mutation	22	41566475	A	C	8	92
BRCA	TCGA-C8-A27B	NHP2L1	SNP	Silent	22	42071108	C	A	17	56
BRCA	TCGA-C8-A27B	CELSR1	SNP	Missense_Mutation	22	46761272	C	T	31	96
BRCA	TCGA-C8-A27B	FRMD7	SNP	Missense_Mutation	23	131212589	G	T	45	80
BRCA	TCGA-C8-A27B	CNGA2	SNP	Nonsense_Mutation	23	150911600	A	T	5	66
BRCA	TCGA-C8-A27B	GDI1	SNP	Silent	23	153668821	C	T	19	49
BRCA	TCGA-C8-A27B	PLXNA3	SNP	Nonsense_Mutation	23	153695976	C	A	31	95
BRCA	TCGA-C8-A27B	GAB3	SNP	Missense_Mutation	23	153924265	C	G	32	78
BRCA	TCGA-C8-A27B	CTPS2	SNP	Silent	23	16720990	T	G	55	33
BRCA	TCGA-C8-A27B	IL1RAPL1	SNP	Missense_Mutation	23	29417323	C	G	32	53
BRCA	TCGA-C8-A27B	HUWE1	SNP	Missense_Mutation	23	53631744	A	C	11	67
BRCA	TCGA-C8-A27B	ALAS2	SNP	Missense_Mutation	23	55046843	C	T	29	65
BRCA	TCGA-C8-A27B	ABI3BP	SNP	Missense_Mutation	3	100471647	C	G	29	60
BRCA	TCGA-C8-A27B	ATP6V1A	SNP	Missense_Mutation	3	113517105	G	C	33	100
BRCA	TCGA-C8-A27B	GOLGB1	SNP	Missense_Mutation	3	121409716	G	A	33	62
BRCA	TCGA-C8-A27B	CASR	DEL	Frame_Shift_Del	3	121975971	GCCATAGAGGAGATAAACAGCA	-	46	86
BRCA	TCGA-C8-A27B	MCM2	SNP	Silent	3	127327260	G	A	35	64
BRCA	TCGA-C8-A27B	COPG1	SNP	Silent	3	128973842	G	A	35	59
BRCA	TCGA-C8-A27B	GRK7	SNP	Missense_Mutation	3	141535617	G	C	41	87
BRCA	TCGA-C8-A27B	IGSF10	SNP	Missense_Mutation	3	151163081	G	C	33	64
BRCA	TCGA-C8-A27B	PLD1	SNP	Missense_Mutation	3	171320875	C	G	21	100
BRCA	TCGA-C8-A27B	NKTR	SNP	Missense_Mutation	3	42678814	A	G	1	67
BRCA	TCGA-C8-A27B	NISCH	SNP	Silent	3	52521224	C	G	23	43
BRCA	TCGA-C8-A27B	ROBO1	SNP	Missense_Mutation	3	78656060	C	G	32	74
BRCA	TCGA-C8-A27B	ROBO1	DEL	Splice_Site	3	78742501	ACCCAACTAAAACAAA	-	10	90
BRCA	TCGA-C8-A27B	MAEA	SNP	Missense_Mutation	4	1330721	C	T	28	79
BRCA	TCGA-C8-A27B	CLDN22	SNP	Missense_Mutation	4	184240911	G	T	47	100
BRCA	TCGA-C8-A27B	FBN2	SNP	Missense_Mutation	5	127611744	C	A	30	78
BRCA	TCGA-C8-A27B	SPOCK1	SNP	Missense_Mutation	5	136403503	G	C	47	78
BRCA	TCGA-C8-A27B	BRD8	SNP	Missense_Mutation	5	137481544	G	C	35	75
BRCA	TCGA-C8-A27B	TRIM23	SNP	Missense_Mutation	5	64907435	G	C	45	95
BRCA	TCGA-C8-A27B	GTF3C6	SNP	Missense_Mutation	6	111280417	G	T	33	84
BRCA	TCGA-C8-A27B	SERPINB1	SNP	Missense_Mutation	6	2840702	G	C	42	73
BRCA	TCGA-C8-A27B	ANKS1A	SNP	Missense_Mutation	6	35051198	C	G	32	98
BRCA	TCGA-C8-A27B	MCM3	SNP	Missense_Mutation	6	52138116	C	G	32	86
BRCA	TCGA-C8-A27B	SMAP1	SNP	Missense_Mutation	6	71508424	C	A	21	69
BRCA	TCGA-C8-A27B	RREB1	SNP	Missense_Mutation	6	7248826	G	C	33	84
BRCA	TCGA-C8-A27B	CPED1	SNP	Missense_Mutation	7	120655806	C	G	29	52
BRCA	TCGA-C8-A27B	CPED1	SNP	Missense_Mutation	7	120767288	C	A	20	54
BRCA	TCGA-C8-A27B	CARD11	SNP	Missense_Mutation	7	2978400	C	G	24	54
BRCA	TCGA-C8-A27B	INHBA	SNP	Missense_Mutation	7	41729394	G	A	38	51
BRCA	TCGA-C8-A27B	ZMIZ2	SNP	Missense_Mutation	7	44795851	G	A	45	91
BRCA	TCGA-C8-A27B	ZNF679	SNP	Missense_Mutation	7	63726567	T	C	51	74
BRCA	TCGA-C8-A27B	PCLO	SNP	Nonsense_Mutation	7	82579907	C	A	32	90
BRCA	TCGA-C8-A27B	PCLO	SNP	Missense_Mutation	7	82784791	T	G	56	70
BRCA	TCGA-C8-A27B	UBR5	SNP	Missense_Mutation	8	103297407	C	T	32	100
BRCA	TCGA-C8-A27B	NDRG1	SNP	Missense_Mutation	8	134266813	G	A	39	74
BRCA	TCGA-C8-A27B	ZNF250	SNP	Missense_Mutation	8	146106959	G	A	38	67
BRCA	TCGA-C8-A27B	KAT6A	SNP	Silent	8	41790605	G	A	45	69
BRCA	TCGA-C8-A27B	FRRS1L	SNP	Silent	9	111903756	A	G	8	49
BRCA	TCGA-C8-A27B	COL5A1	SNP	Missense_Mutation	9	137687118	G	C	44	95
BRCA	TCGA-C8-A27B	DENND4C	SNP	Missense_Mutation	9	19346465	G	C	36	96
BRCA	TCGA-C8-A27B	FRMPD1	SNP	Missense_Mutation	9	37740228	T	A	59	46
BRCA	TCGA-C8-A27B	KIAA1432	SNP	Missense_Mutation	9	5763167	G	C	34	98
BRCA	TCGA-C8-A27B	RMI1	SNP	Missense_Mutation	9	86616601	G	A	33	74
BRCA	TCGA-C8-A27B	FAM22F	SNP	Missense_Mutation	9	97082499	A	T	5	47
BRCA	TCGA-D8-A13Y	KIF1B	SNP	Missense_Mutation	1	10397180	G	A	41	100
BRCA	TCGA-D8-A13Y	C1orf43	SNP	Missense_Mutation	1	154185071	G	A	41	65
BRCA	TCGA-D8-A13Y	ASH1L	SNP	Missense_Mutation	1	155451186	T	G	64	76
BRCA	TCGA-D8-A13Y	COL16A1	SNP	Missense_Mutation	1	32122636	C	T	32	86
BRCA	TCGA-D8-A13Y	MED8	SNP	Nonsense_Mutation	1	43852271	G	C	45	85
BRCA	TCGA-D8-A13Y	SSX2IP	SNP	Silent	1	85136470	T	C	55	63
BRCA	TCGA-D8-A13Y	CUBN	SNP	Missense_Mutation	10	17126407	G	A	42	59
BRCA	TCGA-D8-A13Y	ZNF488	SNP	Missense_Mutation	10	48371106	C	A	28	61
BRCA	TCGA-D8-A13Y	HMBS	SNP	Missense_Mutation	11	118963868	C	T	31	53
BRCA	TCGA-D8-A13Y	OR8G5	SNP	Silent	11	124135016	C	T	29	56
BRCA	TCGA-D8-A13Y	MUC5B	DEL	Splice_Site	11	1251029	CAGCTCCTGGTACTTATGAGCCCAC	-	25	56
BRCA	TCGA-D8-A13Y	FNBP4	SNP	Missense_Mutation	11	47753007	C	T	32	64
BRCA	TCGA-D8-A13Y	TRIM48	SNP	Missense_Mutation	11	55032759	G	A	48	48
BRCA	TCGA-D8-A13Y	OR52H1	DEL	Frame_Shift_Del	11	5566050	C	-	26	52
BRCA	TCGA-D8-A13Y	OR5I1	SNP	Missense_Mutation	11	55703513	A	T	15	73
BRCA	TCGA-D8-A13Y	TRIM5	DEL	In_Frame_Del	11	5701072	GACCTTCCCGTC	-	45	58
BRCA	TCGA-D8-A13Y	STX5	SNP	Silent	11	62595056	G	A	46	56
BRCA	TCGA-D8-A13Y	MAP3K11	SNP	Missense_Mutation	11	65374961	C	T	28	64
BRCA	TCGA-D8-A13Y	UNC93B5	SNP	Missense_Mutation	11	67483428	C	T	19	49
BRCA	TCGA-D8-A13Y	APOLD1	SNP	Missense_Mutation	12	12940449	G	A	37	81
BRCA	TCGA-D8-A13Y	SOX5	SNP	Silent	12	23887621	G	A	41	66
BRCA	TCGA-D8-A13Y	PAN2	SNP	Silent	12	56713711	C	T	29	64
BRCA	TCGA-D8-A13Y	GPR12	SNP	Missense_Mutation	13	27333003	G	A	39	100
BRCA	TCGA-D8-A13Y	TRPC4	SNP	Missense_Mutation	13	38229311	T	A	51	92
BRCA	TCGA-D8-A13Y	CLK3	SNP	Missense_Mutation	15	74914837	G	A	45	100
BRCA	TCGA-D8-A13Y	CSPG4	DEL	Frame_Shift_Del	15	75980799	GACTGCCTCTGAGGCACGTGCTGTG	-	37	29
BRCA	TCGA-D8-A13Y	MON1B	SNP	Missense_Mutation	16	77227443	G	C	45	65
BRCA	TCGA-D8-A13Y	MYH1	SNP	Missense_Mutation	17	10399833	G	A	38	70
BRCA	TCGA-D8-A13Y	TBKBP1	SNP	Nonsense_Mutation	17	45785815	G	T	41	75
BRCA	TCGA-D8-A13Y	C17orf107	SNP	Silent	17	4803317	G	A	45	49
BRCA	TCGA-D8-A13Y	ACE	SNP	Missense_Mutation	17	61558968	C	A	32	63
BRCA	TCGA-D8-A13Y	TP53	DEL	Frame_Shift_Del	17	7578503	CAGGGCAGGTCTTGGC	-	17	63
BRCA	TCGA-D8-A13Y	DCC	SNP	Silent	18	50278518	C	T	23	46
BRCA	TCGA-D8-A13Y	CYB5A	SNP	Silent	18	71959066	C	T	24	45
BRCA	TCGA-D8-A13Y	HAUS5	SNP	Missense_Mutation	19	36109508	G	A	39	66
BRCA	TCGA-D8-A13Y	RYR1	SNP	Missense_Mutation	19	38954480	G	A	41	94
BRCA	TCGA-D8-A13Y	ZNF560	SNP	Missense_Mutation	19	9577519	G	A	37	67
BRCA	TCGA-D8-A13Y	ALPP	SNP	Silent	2	233244601	G	T	44	51
BRCA	TCGA-D8-A13Y	PREPL	SNP	Missense_Mutation	2	44565657	C	G	29	65
BRCA	TCGA-D8-A13Y	LOC100287788	SNP	Splice_Site	2	74605024	G	C	33	50
BRCA	TCGA-D8-A13Y	C2orf51	DEL	Frame_Shift_Del	2	88828895	GCTACCT	-	42	62
BRCA	TCGA-D8-A13Y	KIAA1755	DEL	Frame_Shift_Del	20	36841609	A	-	7	26
BRCA	TCGA-D8-A13Y	KIAA1755	DEL	Frame_Shift_Del	20	36841611	GCAGCTTGTGGGA	-	42	42
BRCA	TCGA-D8-A13Y	ZNF512B	SNP	Silent	20	62592679	G	A	35	70
BRCA	TCGA-D8-A13Y	PAK7	SNP	Silent	20	9546864	G	C	35	30
BRCA	TCGA-D8-A13Y	DDX17	SNP	Missense_Mutation	22	38888051	C	G	32	59
BRCA	TCGA-D8-A13Y	ZC3H7B	SNP	Missense_Mutation	22	41734248	G	A	35	65
BRCA	TCGA-D8-A13Y	HTATSF1	SNP	Missense_Mutation	23	135593486	G	A	41	62
BRCA	TCGA-D8-A13Y	ZNF41	SNP	Missense_Mutation	23	47308385	G	C	45	58
BRCA	TCGA-D8-A13Y	PCDH11X	SNP	Missense_Mutation	23	91873742	G	A	44	53
BRCA	TCGA-D8-A13Y	HGD	SNP	Missense_Mutation	3	120394696	A	C	5	51
BRCA	TCGA-D8-A13Y	TSEN2	SNP	Missense_Mutation	3	12558155	G	C	45	58
BRCA	TCGA-D8-A13Y	MMRN1	SNP	Silent	4	90856574	G	A	47	49
BRCA	TCGA-D8-A13Y	SLCO4C1	SNP	Missense_Mutation	5	101631639	G	A	45	52
BRCA	TCGA-D8-A13Y	SLC12A7	SNP	Missense_Mutation	5	1075597	G	C	41	92
BRCA	TCGA-D8-A13Y	PCDHA5	SNP	Missense_Mutation	5	140203381	C	T	27	54
BRCA	TCGA-D8-A13Y	FAM105B	SNP	Silent	5	14687728	A	G	3	55
BRCA	TCGA-D8-A13Y	ATP10B	SNP	Missense_Mutation	5	160047807	C	T	19	29
BRCA	TCGA-D8-A13Y	ELL2	SNP	Missense_Mutation	5	95226942	C	G	32	64
BRCA	TCGA-D8-A13Y	DSE	SNP	Missense_Mutation	6	116757537	C	T	30	99
BRCA	TCGA-D8-A13Y	TTK	SNP	Missense_Mutation	6	80746293	A	G	2	90
BRCA	TCGA-D8-A13Y	PLOD3	SNP	Missense_Mutation	7	100861229	C	G	18	44
BRCA	TCGA-D8-A13Y	RELN	SNP	Missense_Mutation	7	103214731	C	A	17	95
BRCA	TCGA-D8-A13Y	PHF14	SNP	Silent	7	11022484	C	T	28	74
BRCA	TCGA-D8-A13Y	NOBOX	SNP	Missense_Mutation	7	144097327	G	A	40	51
BRCA	TCGA-D8-A13Y	SLC25A32	SNP	Missense_Mutation	8	104412655	C	T	32	60
BRCA	TCGA-D8-A13Y	KCNQ3	SNP	Missense_Mutation	8	133186503	A	T	3	89
BRCA	TCGA-D8-A13Y	PLEC	SNP	Silent	8	144997236	G	A	43	48
BRCA	TCGA-D8-A13Y	POLB	DEL	Splice_Site	8	42207581	TGGGTAAGAAC	-	63	50
BRCA	TCGA-D8-A13Y	MMP16	SNP	Silent	8	89130939	C	T	32	77
BRCA	TCGA-D8-A13Y	AMBP	SNP	Missense_Mutation	9	116840414	G	C	42	55
BRCA	TCGA-D8-A13Y	RFX3	SNP	Missense_Mutation	9	3293227	G	C	46	100
BRCA	TCGA-D8-A13Y	VPS13A	SNP	Missense_Mutation	9	79827929	G	C	33	68
BRCA	TCGA-D8-A13Z	MUC1	SNP	Missense_Mutation	1	155160204	C	A	19	37
BRCA	TCGA-D8-A13Z	ESRRG	SNP	Splice_site	1	216896587	C	G	32	81
BRCA	TCGA-D8-A13Z	LUZP1	SNP	Missense_Mutation	1	23419915	G	C	44	61
BRCA	TCGA-D8-A13Z	SZT2	SNP	Silent	1	43892390	C	T	23	51
BRCA	TCGA-D8-A13Z	ZCCHC11	SNP	Missense_Mutation	1	52991318	G	A	33	67
BRCA	TCGA-D8-A13Z	ROR1	SNP	Missense_Mutation	1	64624796	C	T	31	82
BRCA	TCGA-D8-A13Z	SVIL	SNP	Missense_Mutation	10	29775379	T	G	56	58
BRCA	TCGA-D8-A13Z	PTEN	INS	Frame_Shift_Ins	10	89717742	-	G	11	88
BRCA	TCGA-D8-A13Z	FAM118B	SNP	Missense_Mutation	11	126110852	T	G	51	55
BRCA	TCGA-D8-A13Z	ST3GAL4	SNP	Missense_Mutation	11	126283912	G	A	47	15
BRCA	TCGA-D8-A13Z	PRDM10	SNP	Missense_Mutation	11	129827748	C	A	18	98
BRCA	TCGA-D8-A13Z	LDLRAD3	SNP	Missense_Mutation	11	36119907	G	A	38	91
BRCA	TCGA-D8-A13Z	OR51A7	SNP	Missense_Mutation	11	4928748	A	T	3	52
BRCA	TCGA-D8-A13Z	DAK	SNP	Missense_Mutation	11	61112999	G	C	44	98
BRCA	TCGA-D8-A13Z	SLC22A11	SNP	Missense_Mutation	11	64329577	G	A	39	72
BRCA	TCGA-D8-A13Z	EIF3F	SNP	Silent	11	8016560	C	T	21	58
BRCA	TCGA-D8-A13Z	ACAD10	SNP	Missense_Mutation	12	112153693	C	T	31	63
BRCA	TCGA-D8-A13Z	PSMD9	SNP	Missense_Mutation	12	122326782	G	A	35	49
BRCA	TCGA-D8-A13Z	GRIN2B	SNP	Missense_Mutation	12	13716276	C	T	27	81
BRCA	TCGA-D8-A13Z	GUCY2C	SNP	Missense_Mutation	12	14804406	C	A	23	97
BRCA	TCGA-D8-A13Z	MLL2	SNP	Missense_Mutation	12	49418417	C	A	29	84
BRCA	TCGA-D8-A13Z	ESPL1	SNP	Missense_Mutation	12	53680055	C	G	21	58
BRCA	TCGA-D8-A13Z	TARBP2	SNP	Nonsense_Mutation	12	53895208	C	T	25	63
BRCA	TCGA-D8-A13Z	LRP1	SNP	Silent	12	57569343	C	G	23	39
BRCA	TCGA-D8-A13Z	LRP1	SNP	Missense_Mutation	12	57587027	C	G	24	72
BRCA	TCGA-D8-A13Z	XRCC6BP1	SNP	Splice_Site	12	58347387	A	C	15	89
BRCA	TCGA-D8-A13Z	TMBIM4	SNP	Missense_Mutation	12	66531907	C	T	27	82
BRCA	TCGA-D8-A13Z	TPH2	SNP	Silent	12	72338118	G	C	42	62
BRCA	TCGA-D8-A13Z	COG6	SNP	Missense_Mutation	13	40253739	C	G	17	93
BRCA	TCGA-D8-A13Z	FBN1	SNP	Missense_Mutation	15	48780678	C	T	25	100
BRCA	TCGA-D8-A13Z	MYH11	SNP	Silent	16	15931822	G	T	45	62
BRCA	TCGA-D8-A13Z	ABCC1	SNP	Missense_Mutation	16	16219730	G	A	40	96
BRCA	TCGA-D8-A13Z	APOBR	SNP	Missense_Mutation	16	28506761	C	G	27	49
BRCA	TCGA-D8-A13Z	FAM96B	SNP	Missense_Mutation	16	66966114	G	A	39	65
BRCA	TCGA-D8-A13Z	PHLPP2	SNP	Missense_Mutation	16	71683709	C	T	28	100
BRCA	TCGA-D8-A13Z	ATXN1L	SNP	Missense_Mutation	16	71884325	C	G	26	82
BRCA	TCGA-D8-A13Z	PIPOX	SNP	Missense_Mutation	17	27380441	G	A	37	58
BRCA	TCGA-D8-A13Z	KRT17	SNP	Missense_Mutation	17	39780482	G	A	39	86
BRCA	TCGA-D8-A13Z	KIAA0195	SNP	Missense_Mutation	17	73486391	G	T	40	80
BRCA	TCGA-D8-A13Z	TP53	SNP	Missense_Mutation	17	7578508	C	T	25	82
BRCA	TCGA-D8-A13Z	DDX39A	SNP	Nonsense_Mutation	19	14523994	G	T	40	38
BRCA	TCGA-D8-A13Z	ZNF526	SNP	Missense_Mutation	19	42729694	G	A	39	66
BRCA	TCGA-D8-A13Z	PLIN4	SNP	Missense_Mutation	19	4508835	T	A	59	71
BRCA	TCGA-D8-A13Z	TSKS	SNP	Missense_Mutation	19	50245191	C	T	26	73
BRCA	TCGA-D8-A13Z	ZNRF4	SNP	Missense_Mutation	19	5456398	T	A	58	54
BRCA	TCGA-D8-A13Z	NLRP7	SNP	Silent	19	55447631	C	G	29	45
BRCA	TCGA-D8-A13Z	ZNF551	SNP	Missense_Mutation	19	58199532	T	G	56	68
BRCA	TCGA-D8-A13Z	INSR	SNP	Missense_Mutation	19	7267521	T	C	49	87
BRCA	TCGA-D8-A13Z	FSIP2	INS	In_Frame_Ins	2	186671458	-	AAGATA	17	47
BRCA	TCGA-D8-A13Z	RAB17	SNP	Silent	2	238484088	C	T	17	57
BRCA	TCGA-D8-A13Z	C2orf16	DEL	In_Frame_Del	2	27801199	TTG	-	52	52
BRCA	TCGA-D8-A13Z	COL18A1	SNP	Splice_site	21	46911228	C	T	19	31
BRCA	TCGA-D8-A13Z	AKAP17A	SNP	Silent	23	1712955	G	A	39	47
BRCA	TCGA-D8-A13Z	FAM48B2	SNP	Missense_Mutation	23	24331338	G	A	38	51
BRCA	TCGA-D8-A13Z	MAP3K13	SNP	Nonsense_Mutation	3	185191457	G	T	45	64
BRCA	TCGA-D8-A13Z	FYCO1	INS	Splice_Site	3	46026346	-	CC	14	86
BRCA	TCGA-D8-A13Z	COL25A1	SNP	Missense_Mutation	4	110221778	T	G	52	64
BRCA	TCGA-D8-A13Z	SLC6A18	SNP	Missense_Mutation	5	1239601	G	A	38	95
BRCA	TCGA-D8-A13Z	KIAA0141	DEL	Frame_Shift_Del	5	141307719	ACTCTGG	-	6	57
BRCA	TCGA-D8-A13Z	ODZ2	SNP	Silent	5	167674943	C	A	22	49
BRCA	TCGA-D8-A13Z	ZFR	SNP	Missense_Mutation	5	32356003	G	C	33	68
BRCA	TCGA-D8-A13Z	OSMR	SNP	Missense_Mutation	5	38918971	G	C	33	53
BRCA	TCGA-D8-A13Z	RICTOR	SNP	Missense_Mutation	5	39021230	C	T	29	93
BRCA	TCGA-D8-A13Z	NKAIN2	SNP	Missense_Mutation	6	124979382	G	T	41	98
BRCA	TCGA-D8-A13Z	LAMA2	SNP	Missense_Mutation	6	129807718	C	A	32	55
BRCA	TCGA-D8-A13Z	SENP6	SNP	Silent	6	76380373	C	A	29	61
BRCA	TCGA-D8-A13Z	SLC35A1	SNP	Missense_Mutation	6	88218170	G	C	33	99
BRCA	TCGA-D8-A13Z	FERD3L	SNP	Missense_Mutation	7	19184661	G	A	39	70
BRCA	TCGA-D8-A13Z	PHF20L1	SNP	Missense_Mutation	8	133849997	G	A	43	99
BRCA	TCGA-D8-A13Z	RAPGEF1	DEL	In_Frame_Del	9	134503455	CTCTGTGCG	-	24	95
BRCA	TCGA-D8-A140	PRAMEF11	SNP	Missense_Mutation	1	12887609	C	T	22	28
BRCA	TCGA-D8-A140	ANP32E	SNP	Missense_Mutation	1	150204143	C	T	23	53
BRCA	TCGA-D8-A140	CD5L	SNP	Missense_Mutation	1	157805906	C	T	27	61
BRCA	TCGA-D8-A140	MAEL	SNP	Missense_Mutation	1	166974325	A	G	2	54
BRCA	TCGA-D8-A140	PQLC2	SNP	Splice_Site	1	19653907	G	A	40	81
BRCA	TCGA-D8-A140	ZNF281	SNP	Missense_Mutation	1	200378223	T	A	50	61
BRCA	TCGA-D8-A140	SLC26A9	SNP	Missense_Mutation	1	205897095	C	T	19	93
BRCA	TCGA-D8-A140	OBSCN	SNP	Missense_Mutation	1	228521466	C	T	23	57
BRCA	TCGA-D8-A140	OBSCN	INS	Frame_Shift_Ins	1	228537694	-	T	36	61
BRCA	TCGA-D8-A140	ZP4	SNP	Nonsense_Mutation	1	238051691	C	A	29	55
BRCA	TCGA-D8-A140	HS2ST1	SNP	Missense_Mutation	1	87380793	T	G	54	88
BRCA	TCGA-D8-A140	PPAPDC1A	SNP	Nonsense_Mutation	10	122278379	C	A	25	84
BRCA	TCGA-D8-A140	KNDC1	SNP	Silent	10	135020748	C	T	24	51
BRCA	TCGA-D8-A140	MLLT10	SNP	Missense_Mutation	10	22016847	C	T	32	76
BRCA	TCGA-D8-A140	ANK3	SNP	Missense_Mutation	10	61819102	C	T	29	69
BRCA	TCGA-D8-A140	VPS26A	SNP	Missense_Mutation	10	70892783	G	A	39	100
BRCA	TCGA-D8-A140	OR5AS1	SNP	Silent	11	55798416	C	T	29	52
BRCA	TCGA-D8-A140	SLC22A25	SNP	Missense_Mutation	11	62996956	C	A	29	51
BRCA	TCGA-D8-A140	RAB30	SNP	Missense_Mutation	11	82708280	G	C	39	100
BRCA	TCGA-D8-A140	SRSF9	SNP	Missense_Mutation	12	120899883	C	T	19	81
BRCA	TCGA-D8-A140	RAN	DEL	Frame_Shift_Del	12	131359172	G	-	37	80
BRCA	TCGA-D8-A140	YARS2	SNP	Silent	12	32908185	G	A	45	47
BRCA	TCGA-D8-A140	KRT76	SNP	Silent	12	53167402	G	A	46	49
BRCA	TCGA-D8-A140	KRT18	SNP	Silent	12	53344579	C	A	30	53
BRCA	TCGA-D8-A140	PDE1B	SNP	Missense_Mutation	12	54943667	C	T	30	71
BRCA	TCGA-D8-A140	NUP107	SNP	Missense_Mutation	12	69082816	C	G	28	81
BRCA	TCGA-D8-A140	GPR162	SNP	Missense_Mutation	12	6936007	G	A	41	62
BRCA	TCGA-D8-A140	TMTC4	SNP	Missense_Mutation	13	101278346	C	T	32	59
BRCA	TCGA-D8-A140	DAOA	SNP	Missense_Mutation	13	106142353	A	G	4	54
BRCA	TCGA-D8-A140	CLDN10	SNP	Silent	13	96086159	G	A	40	46
BRCA	TCGA-D8-A140	DOCK9	SNP	Silent	13	99461377	C	T	23	92
BRCA	TCGA-D8-A140	NPAS3	SNP	Missense_Mutation	14	34269516	C	T	23	84
BRCA	TCGA-D8-A140	PLEKHG3	SNP	Missense_Mutation	14	65208367	C	T	18	65
BRCA	TCGA-D8-A140	KCNK13	SNP	Nonsense_Mutation	14	90650490	A	T	1	91
BRCA	TCGA-D8-A140	SLC12A6	SNP	Missense_Mutation	15	34530451	G	C	41	69
BRCA	TCGA-D8-A140	C15orf52	INS	Frame_Shift_Ins	15	40627656	-	A	18	51
BRCA	TCGA-D8-A140	STARD9	SNP	Silent	15	42984495	G	A	37	20
BRCA	TCGA-D8-A140	PEAK1	SNP	Missense_Mutation	15	77474189	T	C	59	92
BRCA	TCGA-D8-A140	MFGE8	SNP	Missense_Mutation	15	89449997	G	A	38	59
BRCA	TCGA-D8-A140	ANPEP	SNP	Missense_Mutation	15	90328653	G	A	40	82
BRCA	TCGA-D8-A140	LOC401847	SNP	Missense_Mutation	16	33605741	G	C	43	51
BRCA	TCGA-D8-A140	ZNF75A	SNP	Missense_Mutation	16	3366955	G	T	34	53
BRCA	TCGA-D8-A140	GRIN2A	SNP	Missense_Mutation	16	9934570	C	A	17	98
BRCA	TCGA-D8-A140	COPS3	SNP	Missense_Mutation	17	17163754	A	G	6	78
BRCA	TCGA-D8-A140	ALKBH5	SNP	Missense_Mutation	17	18088015	A	G	11	89
BRCA	TCGA-D8-A140	ULK2	SNP	Silent	17	19685246	C	T	32	66
BRCA	TCGA-D8-A140	STAC2	SNP	Missense_Mutation	17	37371076	G	T	42	54
BRCA	TCGA-D8-A140	SMARCA4	SNP	Silent	19	11113752	C	T	30	82
BRCA	TCGA-D8-A140	NACC1	SNP	Silent	19	13248140	C	T	25	60
BRCA	TCGA-D8-A140	ZFR2	SNP	Splice_site	19	3834981	G	A	38	54
BRCA	TCGA-D8-A140	RYR1	SNP	Silent	19	38993592	C	T	31	49
BRCA	TCGA-D8-A140	SIGLEC7	SNP	Missense_Mutation	19	51647840	T	G	54	55
BRCA	TCGA-D8-A140	ZNF347	SNP	Nonsense_Mutation	19	53645625	G	T	48	48
BRCA	TCGA-D8-A140	SLC20A1	SNP	Missense_Mutation	2	113404906	G	T	46	84
BRCA	TCGA-D8-A140	AAK1	SNP	Missense_Mutation	2	69870081	C	T	26	89
BRCA	TCGA-D8-A140	FER1L5	SNP	Nonsense_Mutation	2	97313550	T	A	63	70
BRCA	TCGA-D8-A140	NCOA3	SNP	Missense_Mutation	20	46281213	C	T	31	97
BRCA	TCGA-D8-A140	ADARB1	SNP	Silent	21	46596033	G	A	45	82
BRCA	TCGA-D8-A140	SLC25A53	SNP	Missense_Mutation	23	103349790	C	T	18	58
BRCA	TCGA-D8-A140	CXorf57	SNP	Nonsense_Mutation	23	105855830	C	T	21	45
BRCA	TCGA-D8-A140	IRS4	SNP	Missense_Mutation	23	107978764	C	T	31	83
BRCA	TCGA-D8-A140	GRIPAP1	SNP	Silent	23	48831588	G	A	47	72
BRCA	TCGA-D8-A140	NUDT10	SNP	Missense_Mutation	23	51076061	G	A	40	48
BRCA	TCGA-D8-A140	PFKFB1	SNP	Silent	23	54978380	G	A	42	54
BRCA	TCGA-D8-A140	DLG3	SNP	Missense_Mutation	23	69717042	C	A	30	92
BRCA	TCGA-D8-A140	PHKA1	SNP	Silent	23	71823050	G	A	35	72
BRCA	TCGA-D8-A140	KIAA2022	SNP	Missense_Mutation	23	73964215	C	T	17	50
BRCA	TCGA-D8-A140	SEC13	SNP	Nonsense_Mutation	3	10354321	C	T	30	93
BRCA	TCGA-D8-A140	SEC61A1	SNP	Missense_Mutation	3	127788327	C	T	22	100
BRCA	TCGA-D8-A140	ITPR1	SNP	Nonsense_Mutation	3	4699856	G	T	33	96
BRCA	TCGA-D8-A140	FRMD4B	SNP	Missense_Mutation	3	69244205	T	G	63	90
BRCA	TCGA-D8-A140	HELT	SNP	Missense_Mutation	4	185940105	G	T	38	76
BRCA	TCGA-D8-A140	GK2	SNP	Silent	4	80327945	G	A	38	30
BRCA	TCGA-D8-A140	MAN2A1	SNP	Missense_Mutation	5	109091068	G	T	42	95
BRCA	TCGA-D8-A140	GRM6	SNP	Silent	5	178410025	G	A	38	15
BRCA	TCGA-D8-A140	FCHO2	SNP	Missense_Mutation	5	72330517	G	T	36	76
BRCA	TCGA-D8-A140	ARHGEF28	SNP	Missense_Mutation	5	73178396	A	G	13	93
BRCA	TCGA-D8-A140	GPR126	SNP	Missense_Mutation	6	142711398	G	A	41	80
BRCA	TCGA-D8-A140	TIAM2	SNP	Silent	6	155561720	C	T	25	54
BRCA	TCGA-D8-A140	GRM4	SNP	Missense_Mutation	6	34004103	G	A	42	98
BRCA	TCGA-D8-A140	SLC35B2	SNP	Missense_Mutation	6	44224176	G	T	42	83
BRCA	TCGA-D8-A140	TSGA13	SNP	Missense_Mutation	7	130357595	G	A	41	60
BRCA	TCGA-D8-A140	AUTS2	SNP	Silent	7	70255691	G	A	34	63
BRCA	TCGA-D8-A140	MAGI2	SNP	Missense_Mutation	7	77789453	C	T	27	59
BRCA	TCGA-D8-A140	AZIN1	SNP	Missense_Mutation	8	103841546	C	T	29	70
BRCA	TCGA-D8-A140	BLK	SNP	Missense_Mutation	8	11418950	C	T	19	66
BRCA	TCGA-D8-A140	RP1	SNP	Missense_Mutation	8	55537248	C	T	29	67
BRCA	TCGA-D8-A140	FKBP15	SNP	Missense_Mutation	9	115964882	A	G	13	86
BRCA	TCGA-D8-A140	RC3H2	SNP	Missense_Mutation	9	125621114	T	C	57	86
BRCA	TCGA-D8-A140	CRB2	SNP	Missense_Mutation	9	126125420	G	A	38	43
BRCA	TCGA-D8-A140	FAM166A	INS	Frame_Shift_Ins	9	140142146	-	G	31	41
BRCA	TCGA-D8-A141	KCNK2	SNP	Missense_Mutation	1	215408369	C	T	21	86
BRCA	TCGA-D8-A141	TRIM11	SNP	Missense_Mutation	1	228582831	C	T	23	72
BRCA	TCGA-D8-A141	THNSL1	SNP	Missense_Mutation	10	25313006	G	T	41	61
BRCA	TCGA-D8-A141	TRHDE	SNP	Missense_Mutation	12	72956762	C	G	17	78
BRCA	TCGA-D8-A141	NEK3	DEL	Frame_Shift_Del	13	52726763	T	-	59	78
BRCA	TCGA-D8-A141	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-D8-A141	SLC46A1	SNP	Missense_Mutation	17	26732105	G	A	39	53
BRCA	TCGA-D8-A141	GP1BA	SNP	Missense_Mutation	17	4837701	C	G	31	51
BRCA	TCGA-D8-A141	CAMSAP3	SNP	Missense_Mutation	19	7682810	C	T	31	83
BRCA	TCGA-D8-A141	EIF2AK3	SNP	Silent	2	88885398	C	A	19	44
BRCA	TCGA-D8-A141	RUNX1	SNP	Splice_Site	21	36252853	C	G	18	100
BRCA	TCGA-D8-A141	TLR8	SNP	Missense_Mutation	23	12937272	A	G	11	55
BRCA	TCGA-D8-A141	GPKOW	SNP	Missense_Mutation	23	48978773	G	T	46	53
BRCA	TCGA-D8-A141	ZMYM3	SNP	Missense_Mutation	23	70461089	T	C	49	87
BRCA	TCGA-D8-A141	HIST1H2AE	SNP	Silent	6	26217367	G	A	46	63
BRCA	TCGA-D8-A141	TRERF1	SNP	Silent	6	42227276	C	T	27	47
BRCA	TCGA-D8-A141	COBL	SNP	Missense_Mutation	7	51095504	G	T	44	86
BRCA	TCGA-D8-A142	LENEP	SNP	Missense_Mutation	1	154966145	G	A	37	43
BRCA	TCGA-D8-A142	FDPS	SNP	Silent	1	155290277	G	A	48	37
BRCA	TCGA-D8-A142	ZBTB41	SNP	Missense_Mutation	1	197169544	T	G	56	56
BRCA	TCGA-D8-A142	INTS7	SNP	Missense_Mutation	1	212148707	T	C	51	94
BRCA	TCGA-D8-A142	LRRC7	SNP	Silent	1	70446130	A	G	14	50
BRCA	TCGA-D8-A142	LRRC40	SNP	Missense_Mutation	1	70641557	G	A	41	94
BRCA	TCGA-D8-A142	FAM21A	SNP	Missense_Mutation	10	51827934	G	A	44	60
BRCA	TCGA-D8-A142	ENTPD1	SNP	Splice_Site	10	97602252	G	A	44	91
BRCA	TCGA-D8-A142	MUC5B	DEL	Frame_Shift_Del	11	1269544	A	-	10	44
BRCA	TCGA-D8-A142	DEPDC4	SNP	Missense_Mutation	12	100660730	C	G	19	48
BRCA	TCGA-D8-A142	ATP6V0A2	SNP	Silent	12	124241429	C	T	32	74
BRCA	TCGA-D8-A142	NINJ2	SNP	Silent	12	675138	G	A	37	43
BRCA	TCGA-D8-A142	KERA	SNP	Silent	12	91449597	C	T	17	52
BRCA	TCGA-D8-A142	AHNAK2	SNP	Missense_Mutation	14	105417688	A	G	8	53
BRCA	TCGA-D8-A142	FSD2	SNP	Missense_Mutation	15	83437686	G	A	37	92
BRCA	TCGA-D8-A142	NTHL1	SNP	Missense_Mutation	16	2096293	C	T	30	66
BRCA	TCGA-D8-A142	C16orf96	DEL	Frame_Shift_Del	16	4626490	C	-	18	64
BRCA	TCGA-D8-A142	ABAT	SNP	Silent	16	8862091	C	T	27	49
BRCA	TCGA-D8-A142	TAOK1	SNP	Missense_Mutation	17	27805320	C	G	28	100
BRCA	TCGA-D8-A142	SPNS3	SNP	Silent	17	4389850	C	T	19	79
BRCA	TCGA-D8-A142	APOH	SNP	Splice_Site	17	64219815	C	T	19	74
BRCA	TCGA-D8-A142	TP53	SNP	Missense_Mutation	17	7577106	G	C	41	95
BRCA	TCGA-D8-A142	PTGER1	SNP	Missense_Mutation	19	14583533	C	T	18	78
BRCA	TCGA-D8-A142	CYP4F11	SNP	Missense_Mutation	19	16035659	C	T	27	48
BRCA	TCGA-D8-A142	ZNF429	SNP	Missense_Mutation	19	21720707	G	C	33	70
BRCA	TCGA-D8-A142	PSMC4	SNP	Missense_Mutation	19	40487109	T	C	63	85
BRCA	TCGA-D8-A142	SIGLEC12	SNP	Missense_Mutation	19	52001438	C	A	30	51
BRCA	TCGA-D8-A142	SNTG2	SNP	Silent	2	1271265	C	T	19	30
BRCA	TCGA-D8-A142	ABCB11	SNP	Missense_Mutation	2	169826581	C	A	28	86
BRCA	TCGA-D8-A142	TTN	SNP	Missense_Mutation	2	179396209	C	G	32	100
BRCA	TCGA-D8-A142	TTN	SNP	Missense_Mutation	2	179569129	C	G	25	56
BRCA	TCGA-D8-A142	WDR75	SNP	Missense_Mutation	2	190327230	G	A	39	97
BRCA	TCGA-D8-A142	ENSG00000196758	SNP	Missense_Mutation	2	240500438	G	A	40	53
BRCA	TCGA-D8-A142	NDUFA10	DEL	In_Frame_Del	2	240954240	GAT	-	33	53
BRCA	TCGA-D8-A142	YWHAB	SNP	Missense_Mutation	20	43530358	C	T	27	100
BRCA	TCGA-D8-A142	RCAN1	SNP	Silent	21	35890532	T	G	55	42
BRCA	TCGA-D8-A142	SLC5A4	SNP	Silent	22	32614516	G	A	40	50
BRCA	TCGA-D8-A142	GRIA3	SNP	Missense_Mutation	23	122598837	C	A	26	95
BRCA	TCGA-D8-A142	FRMPD4	SNP	Missense_Mutation	23	12704307	G	T	46	73
BRCA	TCGA-D8-A142	FAM58A	SNP	Nonsense_Mutation	23	152860089	C	T	22	94
BRCA	TCGA-D8-A142	AWAT1	SNP	Missense_Mutation	23	69456923	G	C	34	62
BRCA	TCGA-D8-A142	DPPA2	SNP	Silent	3	109027096	C	G	31	34
BRCA	TCGA-D8-A142	C3orf19	SNP	Silent	3	14708387	G	A	35	47
BRCA	TCGA-D8-A142	FGD5	SNP	Missense_Mutation	3	14862067	G	A	40	95
BRCA	TCGA-D8-A142	ACTR8	SNP	Silent	3	53908256	A	C	3	41
BRCA	TCGA-D8-A142	OTUD4	SNP	Silent	4	146064523	C	T	23	51
BRCA	TCGA-D8-A142	GRIA2	SNP	Missense_Mutation	4	158282695	C	T	21	100
BRCA	TCGA-D8-A142	GALNT7	SNP	Silent	4	174223291	T	C	59	60
BRCA	TCGA-D8-A142	ZBTB49	SNP	Missense_Mutation	4	4314784	C	G	20	91
BRCA	TCGA-D8-A142	ETF1	SNP	Nonsense_Mutation	5	137844062	G	A	39	76
BRCA	TCGA-D8-A142	LOC100288105	SNP	Silent	5	140242970	G	A	40	45
BRCA	TCGA-D8-A142	CDH12	SNP	Missense_Mutation	5	21752184	C	A	20	96
BRCA	TCGA-D8-A142	MTMR12	SNP	Missense_Mutation	5	32233991	A	C	6	90
BRCA	TCGA-D8-A142	CDK19	SNP	Missense_Mutation	6	110942402	C	G	30	100
BRCA	TCGA-D8-A142	NKAIN2	SNP	Missense_Mutation	6	124676437	G	A	44	64
BRCA	TCGA-D8-A142	MYB	SNP	Missense_Mutation	6	135520049	T	G	56	68
BRCA	TCGA-D8-A142	SHPRH	SNP	Missense_Mutation	6	146276440	G	C	40	81
BRCA	TCGA-D8-A142	ZNF192	SNP	Missense_Mutation	6	28120996	G	A	39	55
BRCA	TCGA-D8-A142	KLC4	SNP	Missense_Mutation	6	43029294	C	T	32	99
BRCA	TCGA-D8-A142	MEP1A	SNP	Missense_Mutation	6	46787380	C	A	19	47
BRCA	TCGA-D8-A142	LGSN	SNP	Silent	6	63989962	A	T	7	49
BRCA	TCGA-D8-A142	KIAA1009	SNP	Missense_Mutation	6	84904772	C	T	20	49
BRCA	TCGA-D8-A142	HDAC9	SNP	Splice_Site	7	18833076	G	T	44	86
BRCA	TCGA-D8-A142	GLI3	SNP	Silent	7	42005086	G	A	40	52
BRCA	TCGA-D8-A142	ARPC1B	SNP	Silent	7	98988555	G	A	39	43
BRCA	TCGA-D8-A142	ZHX1	SNP	Missense_Mutation	8	124266845	G	A	41	70
BRCA	TCGA-D8-A142	SCARA3	SNP	Missense_Mutation	8	27516828	G	A	40	98
BRCA	TCGA-D8-A142	UNC5D	SNP	Silent	8	35631900	C	A	24	64
BRCA	TCGA-D8-A142	FGFR1	SNP	Silent	8	38275446	G	A	37	31
BRCA	TCGA-D8-A142	SDR16C6	SNP	Missense_Mutation	8	57307803	G	T	48	74
BRCA	TCGA-D8-A142	CACNA1B	SNP	Silent	9	140901245	A	T	7	32
BRCA	TCGA-D8-A143	FAM40A	INS	Splice_site	1	110590491	-	GTGA	23	96
BRCA	TCGA-D8-A143	ADORA3	SNP	Missense_Mutation	1	112031583	C	T	25	75
BRCA	TCGA-D8-A143	C1orf114	SNP	Missense_Mutation	1	169364427	C	T	23	58
BRCA	TCGA-D8-A143	RGSL1	SNP	Missense_Mutation	1	182517904	G	A	40	49
BRCA	TCGA-D8-A143	PRG4	SNP	Silent	1	186277245	C	A	22	49
BRCA	TCGA-D8-A143	OBSCN	SNP	Missense_Mutation	1	228556454	G	T	39	69
BRCA	TCGA-D8-A143	KIF26B	SNP	Missense_Mutation	1	245772787	C	T	30	100
BRCA	TCGA-D8-A143	CAP1	SNP	Missense_Mutation	1	40530205	C	G	18	64
BRCA	TCGA-D8-A143	BMS1	SNP	Missense_Mutation	10	43326387	T	A	55	61
BRCA	TCGA-D8-A143	BICC1	SNP	Missense_Mutation	10	60560727	A	T	12	78
BRCA	TCGA-D8-A143	TTC18	SNP	Missense_Mutation	10	75114545	C	G	20	45
BRCA	TCGA-D8-A143	OR2AG2	SNP	Missense_Mutation	11	6789772	T	A	54	41
BRCA	TCGA-D8-A143	UBC	SNP	Missense_Mutation	12	125397945	G	C	46	93
BRCA	TCGA-D8-A143	GPR133	SNP	Nonsense_Mutation	12	131488811	C	T	21	51
BRCA	TCGA-D8-A143	RB1	INS	Frame_Shift_Ins	13	49033889	-	TAGAACA	52	69
BRCA	TCGA-D8-A143	IREB2	SNP	Missense_Mutation	15	78768612	C	G	20	100
BRCA	TCGA-D8-A143	CALB2	DEL	In_Frame_Del	16	71408680	GAA	-	45	96
BRCA	TCGA-D8-A143	MYH13	SNP	Missense_Mutation	17	10219317	G	A	40	75
BRCA	TCGA-D8-A143	C17orf64	SNP	Missense_Mutation	17	58503620	C	A	26	64
BRCA	TCGA-D8-A143	FDXR	SNP	Missense_Mutation	17	72860220	G	C	39	53
BRCA	TCGA-D8-A143	TP53	SNP	Splice_Site	17	7576851	A	C	14	69
BRCA	TCGA-D8-A143	MAST1	SNP	Missense_Mutation	19	12980054	C	A	26	94
BRCA	TCGA-D8-A143	ATP13A1	SNP	Silent	19	19766177	G	T	47	65
BRCA	TCGA-D8-A143	LOC100289119	SNP	Silent	19	36297501	A	G	16	53
BRCA	TCGA-D8-A143	PRX	SNP	Missense_Mutation	19	40901124	C	A	21	48
BRCA	TCGA-D8-A143	ZNF841	SNP	Missense_Mutation	19	52569631	C	T	20	31
BRCA	TCGA-D8-A143	LRP1B	SNP	Missense_Mutation	2	141130589	T	G	56	64
BRCA	TCGA-D8-A143	APOB	DEL	In_Frame_Del	2	21228741	CTT	-	24	98
BRCA	TCGA-D8-A143	MYH7B	SNP	Missense_Mutation	20	33577577	G	T	46	98
BRCA	TCGA-D8-A143	DSCAM	SNP	Missense_Mutation	21	41559154	C	G	32	100
BRCA	TCGA-D8-A143	PHF16	SNP	Silent	23	46887478	T	C	59	78
BRCA	TCGA-D8-A143	USP27X	SNP	Missense_Mutation	23	49645348	A	T	14	51
BRCA	TCGA-D8-A143	AKAP4	SNP	Missense_Mutation	23	49958079	G	A	38	71
BRCA	TCGA-D8-A143	C3orf52	SNP	Missense_Mutation	3	111831902	G	T	44	78
BRCA	TCGA-D8-A143	FGD5	SNP	Missense_Mutation	3	14860967	C	T	27	28
BRCA	TCGA-D8-A143	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-D8-A143	NAA15	SNP	Silent	4	140280938	G	A	35	52
BRCA	TCGA-D8-A143	BMP2K	SNP	Nonsense_Mutation	4	79832817	C	A	29	96
BRCA	TCGA-D8-A143	PCDHA13	SNP	Missense_Mutation	5	140263636	C	T	27	53
BRCA	TCGA-D8-A143	TINAG	SNP	Missense_Mutation	6	54214608	C	T	19	54
BRCA	TCGA-D8-A143	MUC12	DEL	Frame_Shift_Del	7	100642025	CA	-	21	42
BRCA	TCGA-D8-A143	THSD7A	SNP	Missense_Mutation	7	11464427	G	T	36	70
BRCA	TCGA-D8-A145	GDAP2	SNP	Missense_Mutation	1	118426246	G	C	33	73
BRCA	TCGA-D8-A145	KCNJ10	SNP	Missense_Mutation	1	160012273	C	G	28	68
BRCA	TCGA-D8-A145	FMO2	SNP	Missense_Mutation	1	171154975	G	C	41	98
BRCA	TCGA-D8-A145	CEP170	DEL	Frame_Shift_Del	1	243319545	C	-	25	93
BRCA	TCGA-D8-A145	OR8H1	SNP	Missense_Mutation	11	56058345	T	C	59	57
BRCA	TCGA-D8-A145	IFLTD1	SNP	Missense_Mutation	12	25671812	A	G	4	50
BRCA	TCGA-D8-A145	UNC45A	SNP	Missense_Mutation	15	91496469	C	T	27	58
BRCA	TCGA-D8-A145	CHD9	SNP	Missense_Mutation	16	53243700	A	G	13	77
BRCA	TCGA-D8-A145	RNF213	SNP	Silent	17	78264525	C	T	21	52
BRCA	TCGA-D8-A145	PFAS	SNP	Missense_Mutation	17	8161431	G	A	39	92
BRCA	TCGA-D8-A145	LAMA3	SNP	Missense_Mutation	18	21485570	C	A	17	54
BRCA	TCGA-D8-A145	MAPK4	SNP	Silent	18	48256050	C	T	19	51
BRCA	TCGA-D8-A145	ATP13A1	SNP	Silent	19	19762519	G	A	35	65
BRCA	TCGA-D8-A145	NEB	SNP	Missense_Mutation	2	152425880	A	C	13	91
BRCA	TCGA-D8-A145	ARPC2	SNP	Missense_Mutation	2	219114602	G	A	38	100
BRCA	TCGA-D8-A145	BCL2L1	SNP	Silent	20	30309575	T	A	59	47
BRCA	TCGA-D8-A145	TSHZ2	SNP	Missense_Mutation	20	51870353	A	G	6	64
BRCA	TCGA-D8-A145	CECR2	SNP	Missense_Mutation	22	18022239	C	T	31	73
BRCA	TCGA-D8-A145	WWC3	DEL	Frame_Shift_Del	23	10035453	A	-	7	87
BRCA	TCGA-D8-A145	PHF8	SNP	Splice_site	23	54028588	C	T	23	94
BRCA	TCGA-D8-A145	SATL1	SNP	Silent	23	84348197	T	C	61	60
BRCA	TCGA-D8-A145	ATP13A5	SNP	Missense_Mutation	3	193039554	C	T	27	51
BRCA	TCGA-D8-A145	LRRC33	SNP	Missense_Mutation	3	196387275	C	T	19	53
BRCA	TCGA-D8-A145	CX3CR1	SNP	Missense_Mutation	3	39307802	C	G	31	84
BRCA	TCGA-D8-A145	DNAH1	SNP	Missense_Mutation	3	52420266	G	A	46	80
BRCA	TCGA-D8-A145	SEC24B	SNP	Silent	4	110454805	T	G	63	46
BRCA	TCGA-D8-A145	MCC	SNP	Missense_Mutation	5	112363013	C	T	29	91
BRCA	TCGA-D8-A145	NUP155	SNP	Missense_Mutation	5	37327737	A	T	12	85
BRCA	TCGA-D8-A145	CCND3	SNP	Missense_Mutation	6	41908208	A	T	10	68
BRCA	TCGA-D8-A145	LIMK1	SNP	Missense_Mutation	7	73535516	A	C	6	82
BRCA	TCGA-D8-A146	TNN	SNP	Silent	1	175067535	C	T	18	53
BRCA	TCGA-D8-A146	SFXN4	SNP	Nonsense_Mutation	10	120917220	A	C	13	73
BRCA	TCGA-D8-A146	LRRTM3	SNP	Missense_Mutation	10	68687255	G	A	37	98
BRCA	TCGA-D8-A146	FAM22B	SNP	Missense_Mutation	10	81466181	C	T	26	47
BRCA	TCGA-D8-A146	CELF1	SNP	Silent	11	47498507	C	A	18	55
BRCA	TCGA-D8-A146	PITPNM1	SNP	Missense_Mutation	11	67264729	G	A	38	72
BRCA	TCGA-D8-A146	USP15	SNP	Silent	12	62786084	A	G	2	59
BRCA	TCGA-D8-A146	COG3	SNP	Missense_Mutation	13	46054421	A	G	9	88
BRCA	TCGA-D8-A146	DNAH3	SNP	Missense_Mutation	16	20994169	C	T	23	87
BRCA	TCGA-D8-A146	ACTG1	SNP	Missense_Mutation	17	79478289	G	C	42	73
BRCA	TCGA-D8-A146	RBBP8	DEL	Frame_Shift_Del	18	20573334	AATTTAGGCAAGTGACTCTTTATGAGGC	-	1	44
BRCA	TCGA-D8-A146	ZNF181	SNP	Silent	19	35232612	C	T	29	50
BRCA	TCGA-D8-A146	PPFIA3	SNP	Missense_Mutation	19	49643310	G	A	37	92
BRCA	TCGA-D8-A146	ZNF587	SNP	Missense_Mutation	19	58370865	G	A	40	35
BRCA	TCGA-D8-A146	POTEJ	SNP	Missense_Mutation	2	131379061	T	A	51	49
BRCA	TCGA-D8-A146	METTL5	SNP	Missense_Mutation	2	170672017	C	T	32	97
BRCA	TCGA-D8-A146	SCRN3	SNP	Missense_Mutation	2	175264705	G	A	38	78
BRCA	TCGA-D8-A146	UGT1A4	SNP	Missense_Mutation	2	234680926	G	A	46	76
BRCA	TCGA-D8-A146	SLC5A6	SNP	Missense_Mutation	2	27430388	A	C	11	88
BRCA	TCGA-D8-A146	SLC12A5	SNP	Missense_Mutation	20	44680375	C	T	30	91
BRCA	TCGA-D8-A146	ZNFX1	SNP	Nonsense_Mutation	20	47863858	C	T	18	99
BRCA	TCGA-D8-A146	NPTXR	SNP	Missense_Mutation	22	39218663	C	T	18	94
BRCA	TCGA-D8-A146	CXorf40B	SNP	Missense_Mutation	23	149101992	T	C	55	61
BRCA	TCGA-D8-A146	MAMLD1	SNP	Missense_Mutation	23	149638546	C	T	28	48
BRCA	TCGA-D8-A146	KIAA2022	SNP	Missense_Mutation	23	73961112	T	C	60	61
BRCA	TCGA-D8-A146	COL6A5	SNP	Missense_Mutation	3	130145079	C	A	25	46
BRCA	TCGA-D8-A146	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A146	ITIH4	SNP	Silent	3	52863161	C	T	32	69
BRCA	TCGA-D8-A146	SOX30	SNP	Nonsense_Mutation	5	157073789	G	A	40	70
BRCA	TCGA-D8-A146	EFCAB9	SNP	Missense_Mutation	5	171621224	A	C	1	40
BRCA	TCGA-D8-A146	FTSJD2	SNP	Splice_site	6	37429325	G	T	43	99
BRCA	TCGA-D8-A146	DSP	SNP	Missense_Mutation	6	7580379	C	T	18	66
BRCA	TCGA-D8-A146	PINX1	SNP	Missense_Mutation	8	10623423	C	T	31	52
BRCA	TCGA-D8-A146	EFHA2	DEL	Frame_Shift_Del	8	16921636	C	-	26	84
BRCA	TCGA-D8-A147	INTS3	SNP	Missense_Mutation	1	153736642	G	A	41	91
BRCA	TCGA-D8-A147	TDRD10	SNP	Silent	1	154516883	C	A	22	53
BRCA	TCGA-D8-A147	OR10T2	SNP	Missense_Mutation	1	158368709	G	T	46	66
BRCA	TCGA-D8-A147	DDR2	SNP	Missense_Mutation	1	162745606	C	A	32	74
BRCA	TCGA-D8-A147	SEC16B	SNP	Missense_Mutation	1	177929979	G	A	41	69
BRCA	TCGA-D8-A147	NPHS2	SNP	Silent	1	179520518	G	A	46	51
BRCA	TCGA-D8-A147	IGSF21	SNP	Missense_Mutation	1	18618477	G	T	48	86
BRCA	TCGA-D8-A147	CAMSAP2	SNP	Missense_Mutation	1	200818901	C	G	30	87
BRCA	TCGA-D8-A147	LGR6	SNP	Silent	1	202287825	G	T	47	52
BRCA	TCGA-D8-A147	SPRTN	SNP	Missense_Mutation	1	231488731	C	G	32	67
BRCA	TCGA-D8-A147	STX12	SNP	Missense_Mutation	1	28128254	G	T	35	54
BRCA	TCGA-D8-A147	CSMD2	SNP	Silent	1	34076840	G	A	41	51
BRCA	TCGA-D8-A147	PDE4B	SNP	Missense_Mutation	1	66838157	G	T	43	46
BRCA	TCGA-D8-A147	RABGGTB	SNP	Missense_Mutation	1	76254953	T	A	64	89
BRCA	TCGA-D8-A147	IFI44L	SNP	Missense_Mutation	1	79107183	G	C	46	52
BRCA	TCGA-D8-A147	ST8SIA6	SNP	Missense_Mutation	10	17363189	C	A	24	55
BRCA	TCGA-D8-A147	MRC1	SNP	Missense_Mutation	10	18112248	A	G	16	57
BRCA	TCGA-D8-A147	ANKRD26	SNP	Missense_Mutation	10	27324552	A	C	1	50
BRCA	TCGA-D8-A147	TET1	SNP	Silent	10	70405672	T	C	50	51
BRCA	TCGA-D8-A147	EXOC6	SNP	Missense_Mutation	10	94653185	G	A	41	100
BRCA	TCGA-D8-A147	DYNC2H1	SNP	Missense_Mutation	11	103178535	A	T	7	87
BRCA	TCGA-D8-A147	ESAM	SNP	Missense_Mutation	11	124623780	G	A	33	84
BRCA	TCGA-D8-A147	NELL1	SNP	Missense_Mutation	11	21556009	A	G	3	69
BRCA	TCGA-D8-A147	LGR4	SNP	Missense_Mutation	11	27406878	T	C	55	79
BRCA	TCGA-D8-A147	OR5I1	SNP	Missense_Mutation	11	55703108	G	A	33	53
BRCA	TCGA-D8-A147	TRIM34	SNP	Nonsense_Mutation	11	5624731	C	G	18	66
BRCA	TCGA-D8-A147	PACS1	SNP	Silent	11	65983634	C	T	17	60
BRCA	TCGA-D8-A147	DHCR7	SNP	Silent	11	71148981	G	A	40	41
BRCA	TCGA-D8-A147	SCYL2	SNP	Missense_Mutation	12	100729669	G	C	33	48
BRCA	TCGA-D8-A147	PEBP1	SNP	Missense_Mutation	12	118582484	G	T	42	83
BRCA	TCGA-D8-A147	SLCO1A2	DEL	In_Frame_Del	12	21428239	AAT	-	1	55
BRCA	TCGA-D8-A147	MCRS1	SNP	Missense_Mutation	12	49957250	C	T	29	98
BRCA	TCGA-D8-A147	CD163L1	SNP	Missense_Mutation	12	7527924	C	G	30	58
BRCA	TCGA-D8-A147	CAPS2	SNP	Missense_Mutation	12	75716789	G	C	45	66
BRCA	TCGA-D8-A147	LRRIQ1	SNP	Missense_Mutation	12	85546835	T	A	52	58
BRCA	TCGA-D8-A147	BTBD7	SNP	Missense_Mutation	14	93709023	G	A	41	83
BRCA	TCGA-D8-A147	MTMR10	SNP	Silent	15	31239429	G	C	39	0
BRCA	TCGA-D8-A147	CHRM5	SNP	Missense_Mutation	15	34355864	G	A	38	51
BRCA	TCGA-D8-A147	SPTBN5	SNP	Missense_Mutation	15	42144921	C	G	32	62
BRCA	TCGA-D8-A147	COPS2	SNP	Missense_Mutation	15	49420938	G	A	34	73
BRCA	TCGA-D8-A147	TSC2	SNP	Missense_Mutation	16	2112513	A	T	9	76
BRCA	TCGA-D8-A147	DOC2A	SNP	Silent	16	30018135	G	T	45	73
BRCA	TCGA-D8-A147	CKLF	SNP	Missense_Mutation	16	66592170	A	T	3	61
BRCA	TCGA-D8-A147	SPG7	SNP	Silent	16	89590445	G	A	33	71
BRCA	TCGA-D8-A147	MYO15A	SNP	Missense_Mutation	17	18082136	C	A	22	57
BRCA	TCGA-D8-A147	HEXIM1	SNP	Silent	17	43227034	G	A	33	75
BRCA	TCGA-D8-A147	SPOP	SNP	Missense_Mutation	17	47688699	C	G	32	100
BRCA	TCGA-D8-A147	SPAG9	SNP	Missense_Mutation	17	49091680	C	G	29	88
BRCA	TCGA-D8-A147	KCNH6	SNP	Missense_Mutation	17	61601567	C	G	32	65
BRCA	TCGA-D8-A147	SRP68	SNP	Missense_Mutation	17	74068454	T	C	62	79
BRCA	TCGA-D8-A147	TP53	SNP	Missense_Mutation	17	7578403	C	A	25	84
BRCA	TCGA-D8-A147	SETBP1	SNP	Missense_Mutation	18	42643634	C	G	23	54
BRCA	TCGA-D8-A147	PHLPP1	SNP	Missense_Mutation	18	60642850	A	G	16	54
BRCA	TCGA-D8-A147	LPPR2	SNP	Silent	19	11468358	A	G	11	51
BRCA	TCGA-D8-A147	LOC646864	SNP	Silent	19	23032019	A	T	7	50
BRCA	TCGA-D8-A147	ZNF536	SNP	Missense_Mutation	19	31039063	C	T	24	77
BRCA	TCGA-D8-A147	ZNF780A	SNP	Silent	19	40581287	A	G	9	50
BRCA	TCGA-D8-A147	CIC	SNP	Missense_Mutation	19	42794664	G	C	34	48
BRCA	TCGA-D8-A147	MEGF8	SNP	Silent	19	42841097	G	T	47	51
BRCA	TCGA-D8-A147	SEMA6B	SNP	Silent	19	4555004	G	A	36	64
BRCA	TCGA-D8-A147	HIF3A	SNP	Missense_Mutation	19	46823710	G	C	33	75
BRCA	TCGA-D8-A147	PEG3	SNP	Missense_Mutation	19	57325217	G	C	45	53
BRCA	TCGA-D8-A147	MYO7B	SNP	Missense_Mutation	2	128346067	A	C	15	39
BRCA	TCGA-D8-A147	TTN	SNP	Missense_Mutation	2	179443774	C	G	29	43
BRCA	TCGA-D8-A147	DNAH7	SNP	Missense_Mutation	2	196912145	G	C	41	52
BRCA	TCGA-D8-A147	CCDC150	SNP	Missense_Mutation	2	197541323	G	C	35	67
BRCA	TCGA-D8-A147	UNC80	SNP	Missense_Mutation	2	210761052	G	C	36	100
BRCA	TCGA-D8-A147	SPEG	DEL	Frame_Shift_Del	2	220332106	TACATGAGGACGACAGTGGCGTC	-	57	86
BRCA	TCGA-D8-A147	ASB1	SNP	Missense_Mutation	2	239353225	A	C	6	77
BRCA	TCGA-D8-A147	TRMT61B	SNP	Missense_Mutation	2	29092767	G	A	37	51
BRCA	TCGA-D8-A147	LOXL3	SNP	Missense_Mutation	2	74777385	G	A	40	65
BRCA	TCGA-D8-A147	FER1L5	SNP	Missense_Mutation	2	97313519	A	G	8	51
BRCA	TCGA-D8-A147	BPIFB3	SNP	Silent	20	31652642	C	T	22	49
BRCA	TCGA-D8-A147	WFDC6	SNP	Nonsense_Mutation	20	44168036	G	T	45	34
BRCA	TCGA-D8-A147	CRLS1	SNP	Silent	20	6011956	G	A	37	55
BRCA	TCGA-D8-A147	ZNF512B	SNP	Missense_Mutation	20	62597959	T	A	56	54
BRCA	TCGA-D8-A147	TTC3	SNP	Missense_Mutation	21	38525425	G	A	33	52
BRCA	TCGA-D8-A147	MORC2	SNP	Missense_Mutation	22	31338115	C	G	32	73
BRCA	TCGA-D8-A147	A4GALT	SNP	Nonsense_Mutation	22	43089316	G	C	40	42
BRCA	TCGA-D8-A147	FBLN1	SNP	Missense_Mutation	22	45972921	C	A	17	65
BRCA	TCGA-D8-A147	CPT1B	SNP	Splice_site	22	51007768	C	T	29	60
BRCA	TCGA-D8-A147	ALG13	SNP	Missense_Mutation	23	111003141	C	G	29	72
BRCA	TCGA-D8-A147	KIAA1210	SNP	Missense_Mutation	23	118215299	G	A	40	51
BRCA	TCGA-D8-A147	FRMD7	SNP	Nonsense_Mutation	23	131233522	A	T	5	74
BRCA	TCGA-D8-A147	MAGEC1	SNP	Missense_Mutation	23	140993500	G	C	45	51
BRCA	TCGA-D8-A147	MXRA5	SNP	Missense_Mutation	23	3241892	T	A	50	50
BRCA	TCGA-D8-A147	MAGEE1	SNP	Missense_Mutation	23	75649513	C	G	24	54
BRCA	TCGA-D8-A147	GOLGB1	SNP	Missense_Mutation	3	121417739	G	T	33	55
BRCA	TCGA-D8-A147	KALRN	SNP	Missense_Mutation	3	123983362	G	A	40	76
BRCA	TCGA-D8-A147	MUC4	SNP	Missense_Mutation	3	195510877	T	A	58	55
BRCA	TCGA-D8-A147	IQCG	SNP	Silent	3	197619514	T	C	56	52
BRCA	TCGA-D8-A147	SCN11A	SNP	Missense_Mutation	3	38951660	A	G	4	26
BRCA	TCGA-D8-A147	RBM6	SNP	Missense_Mutation	3	50005040	C	T	31	77
BRCA	TCGA-D8-A147	PPIP5K2	SNP	Missense_Mutation	5	102526670	G	C	33	70
BRCA	TCGA-D8-A147	MARCH6	SNP	Silent	5	10410284	G	A	46	66
BRCA	TCGA-D8-A147	PDLIM7	SNP	Missense_Mutation	5	176910945	C	G	29	85
BRCA	TCGA-D8-A147	GFPT2	SNP	Missense_Mutation	5	179744011	A	C	12	79
BRCA	TCGA-D8-A147	FLT4	SNP	Silent	5	180045774	T	C	56	48
BRCA	TCGA-D8-A147	DMGDH	SNP	Nonsense_Mutation	5	78328517	G	A	45	61
BRCA	TCGA-D8-A147	FAM81B	SNP	Missense_Mutation	5	94784082	T	C	51	46
BRCA	TCGA-D8-A147	AIM1	SNP	Missense_Mutation	6	106967547	G	A	33	57
BRCA	TCGA-D8-A147	TPD52L1	SNP	Missense_Mutation	6	125569511	A	G	3	53
BRCA	TCGA-D8-A147	LATS1	DEL	Frame_Shift_Del	6	149997698	TAGCAACACTT	-	57	54
BRCA	TCGA-D8-A147	LINC00574	DEL	Splice_Site	6	170200923	ACAGCTCCTTCTGGCCG	-	6	56
BRCA	TCGA-D8-A147	NHLRC1	SNP	Missense_Mutation	6	18122300	C	A	17	78
BRCA	TCGA-D8-A147	HLA-F	SNP	Missense_Mutation	6	29692892	C	G	27	51
BRCA	TCGA-D8-A147	IP6K3	SNP	Missense_Mutation	6	33703104	G	C	33	87
BRCA	TCGA-D8-A147	SRPK1	SNP	Missense_Mutation	6	35836837	C	T	25	100
BRCA	TCGA-D8-A147	MTCH1	SNP	Missense_Mutation	6	36937843	A	G	4	67
BRCA	TCGA-D8-A147	FAM135A	SNP	Missense_Mutation	6	71235917	G	T	47	83
BRCA	TCGA-D8-A147	BLOC1S5	SNP	Missense_Mutation	6	8016001	T	G	51	51
BRCA	TCGA-D8-A147	SNAP91	SNP	Silent	6	84303249	G	A	47	82
BRCA	TCGA-D8-A147	FBXL4	SNP	Missense_Mutation	6	99374449	G	C	34	84
BRCA	TCGA-D8-A147	CNTNAP2	SNP	Missense_Mutation	7	147675016	G	C	41	83
BRCA	TCGA-D8-A147	GIMAP6	SNP	Missense_Mutation	7	150325286	G	A	39	55
BRCA	TCGA-D8-A147	SNX8	SNP	Missense_Mutation	7	2304030	A	G	15	76
BRCA	TCGA-D8-A147	FAM188B	DEL	Frame_Shift_Del	7	30825584	TGGGCCCATCGCCAGCTCCCCACAGG	-	55	44
BRCA	TCGA-D8-A147	CACNA2D1	SNP	Missense_Mutation	7	81589141	A	T	3	89
BRCA	TCGA-D8-A147	TAC1	SNP	Silent	7	97361936	C	G	31	64
BRCA	TCGA-D8-A147	LMTK2	SNP	Missense_Mutation	7	97823289	C	G	30	79
BRCA	TCGA-D8-A147	PKHD1L1	DEL	Splice_site	8	110499050	G	-	35	91
BRCA	TCGA-D8-A147	CSMD3	INS	In_Frame_Ins	8	113960102	-	TTT	8	67
BRCA	TCGA-D8-A147	MYC	SNP	Missense_Mutation	8	128753130	G	A	45	72
BRCA	TCGA-D8-A147	NDRG1	SNP	Missense_Mutation	8	134260979	C	G	30	83
BRCA	TCGA-D8-A147	FAM135B	SNP	Missense_Mutation	8	139268993	C	A	27	76
BRCA	TCGA-D8-A147	DOCK5	DEL	In_Frame_Del	8	25240206	TTTATGAGAACATCA	-	64	79
BRCA	TCGA-D8-A147	PPP2CB	SNP	Missense_Mutation	8	30657145	C	A	30	96
BRCA	TCGA-D8-A147	DEFB1	SNP	Missense_Mutation	8	6735372	G	T	36	47
BRCA	TCGA-D8-A147	SGK223	SNP	Missense_Mutation	8	8175701	G	A	37	86
BRCA	TCGA-D8-A147	KCNS2	SNP	Missense_Mutation	8	99440566	G	T	34	100
BRCA	TCGA-D8-A147	FAM75E1	SNP	Missense_Mutation	9	90503051	C	A	17	49
BRCA	TCGA-D8-A1J9	UBE4B	SNP	Silent	1	10190626	C	G	32	45
BRCA	TCGA-D8-A1J9	BCAS2	SNP	Missense_Mutation	1	115113352	C	G	29	99
BRCA	TCGA-D8-A1J9	NUDT17	SNP	Silent	1	145588435	C	T	32	53
BRCA	TCGA-D8-A1J9	BOLA1	SNP	Missense_Mutation	1	149871844	G	C	37	71
BRCA	TCGA-D8-A1J9	UBAP2L	SNP	Missense_Mutation	1	154241261	C	T	30	94
BRCA	TCGA-D8-A1J9	FCRL3	SNP	Silent	1	157660235	C	G	29	38
BRCA	TCGA-D8-A1J9	DDR2	SNP	Silent	1	162729640	C	T	29	60
BRCA	TCGA-D8-A1J9	SOAT1	SNP	Silent	1	179310328	C	A	32	49
BRCA	TCGA-D8-A1J9	ARPC5	SNP	Silent	1	183599740	G	A	45	61
BRCA	TCGA-D8-A1J9	GLT25D2	SNP	Silent	1	183920242	G	A	45	66
BRCA	TCGA-D8-A1J9	LHX9	SNP	Silent	1	197898203	A	G	3	78
BRCA	TCGA-D8-A1J9	TRAF5	SNP	Missense_Mutation	1	211526585	G	C	42	78
BRCA	TCGA-D8-A1J9	ADCK3	SNP	Silent	1	227149179	C	T	25	55
BRCA	TCGA-D8-A1J9	URB2	SNP	Silent	1	229770771	C	T	29	52
BRCA	TCGA-D8-A1J9	WDR64	SNP	Silent	1	241886720	C	G	29	52
BRCA	TCGA-D8-A1J9	CNST	SNP	Missense_Mutation	1	246810526	G	C	33	48
BRCA	TCGA-D8-A1J9	MACF1	SNP	Nonsense_Mutation	1	39824490	C	G	29	94
BRCA	TCGA-D8-A1J9	ERI3	SNP	Silent	1	44820585	C	T	31	53
BRCA	TCGA-D8-A1J9	MCOLN3	SNP	Missense_Mutation	1	85506704	C	G	27	65
BRCA	TCGA-D8-A1J9	GBP4	SNP	Missense_Mutation	1	89651146	C	T	32	40
BRCA	TCGA-D8-A1J9	HES4	SNP	Silent	1	934931	C	G	30	55
BRCA	TCGA-D8-A1J9	PDCD11	SNP	Missense_Mutation	10	105176260	G	C	45	65
BRCA	TCGA-D8-A1J9	TDRD1	SNP	Missense_Mutation	10	115986858	C	G	32	82
BRCA	TCGA-D8-A1J9	CYP2E1	SNP	Missense_Mutation	10	135340993	C	G	32	60
BRCA	TCGA-D8-A1J9	KIAA0913	SNP	Missense_Mutation	10	75557294	C	T	29	98
BRCA	TCGA-D8-A1J9	CNTN5	SNP	Missense_Mutation	11	100061971	C	T	31	68
BRCA	TCGA-D8-A1J9	ATM	SNP	Missense_Mutation	11	108124566	G	A	33	82
BRCA	TCGA-D8-A1J9	CD3G	SNP	Missense_Mutation	11	118220523	G	A	33	14
BRCA	TCGA-D8-A1J9	DPF2	SNP	Silent	11	65113788	C	T	31	59
BRCA	TCGA-D8-A1J9	CCDC87	SNP	Missense_Mutation	11	66360198	C	T	30	65
BRCA	TCGA-D8-A1J9	CCS	SNP	Missense_Mutation	11	66373005	G	T	33	98
BRCA	TCGA-D8-A1J9	LRTOMT	SNP	Silent	11	71819713	G	A	45	59
BRCA	TCGA-D8-A1J9	DEPDC4	SNP	Missense_Mutation	12	100657603	C	G	30	66
BRCA	TCGA-D8-A1J9	ALDH1L2	SNP	Missense_Mutation	12	105440687	C	G	32	100
BRCA	TCGA-D8-A1J9	CLIP1	SNP	Silent	12	122825432	G	C	33	52
BRCA	TCGA-D8-A1J9	GRIN2B	SNP	Missense_Mutation	12	13716151	C	G	29	96
BRCA	TCGA-D8-A1J9	ATF7IP	SNP	Missense_Mutation	12	14614037	G	A	33	88
BRCA	TCGA-D8-A1J9	PLBD1	SNP	Missense_Mutation	12	14688722	C	T	29	97
BRCA	TCGA-D8-A1J9	SLCO1B3	SNP	Missense_Mutation	12	21033899	A	T	14	75
BRCA	TCGA-D8-A1J9	GALNT8	SNP	Missense_Mutation	12	4853841	G	T	46	76
BRCA	TCGA-D8-A1J9	SCN8A	SNP	Silent	12	52082602	G	A	45	100
BRCA	TCGA-D8-A1J9	INF2	SNP	Missense_Mutation	14	105175628	G	A	41	96
BRCA	TCGA-D8-A1J9	NIN	SNP	Missense_Mutation	14	51219447	G	A	45	72
BRCA	TCGA-D8-A1J9	NIN	SNP	Missense_Mutation	14	51233599	G	T	37	97
BRCA	TCGA-D8-A1J9	PYGL	SNP	Missense_Mutation	14	51376618	C	G	32	61
BRCA	TCGA-D8-A1J9	PAPLN	SNP	Missense_Mutation	14	73729310	C	A	25	61
BRCA	TCGA-D8-A1J9	CATSPERB	SNP	Missense_Mutation	14	92083994	C	T	29	50
BRCA	TCGA-D8-A1J9	APH1B	DEL	Frame_Shift_Del	15	63569883	TA	-	61	84
BRCA	TCGA-D8-A1J9	HERC1	SNP	Missense_Mutation	15	63958297	C	T	29	100
BRCA	TCGA-D8-A1J9	BNC1	SNP	Missense_Mutation	15	83931995	C	T	29	65
BRCA	TCGA-D8-A1J9	IFT140	SNP	Silent	16	1570261	G	A	45	66
BRCA	TCGA-D8-A1J9	SLC5A11	SNP	Missense_Mutation	16	24921688	C	T	21	59
BRCA	TCGA-D8-A1J9	NSMCE1	SNP	Silent	16	27238062	G	A	33	72
BRCA	TCGA-D8-A1J9	APOBR	SNP	Missense_Mutation	16	28507855	G	C	33	43
BRCA	TCGA-D8-A1J9	TBC1D10B	SNP	Missense_Mutation	16	30369766	G	C	41	68
BRCA	TCGA-D8-A1J9	SETD1A	SNP	Missense_Mutation	16	30976309	G	A	37	59
BRCA	TCGA-D8-A1J9	CDH16	SNP	Nonsense_Mutation	16	66946466	C	A	29	69
BRCA	TCGA-D8-A1J9	FUK	SNP	Silent	16	70513502	C	T	30	56
BRCA	TCGA-D8-A1J9	RFWD3	SNP	Missense_Mutation	16	74670451	G	C	45	58
BRCA	TCGA-D8-A1J9	SDR42E1	SNP	Missense_Mutation	16	82033756	G	T	41	98
BRCA	TCGA-D8-A1J9	CHTF18	SNP	Missense_Mutation	16	844160	C	A	25	88
BRCA	TCGA-D8-A1J9	FANCA	SNP	Missense_Mutation	16	89882319	C	A	31	54
BRCA	TCGA-D8-A1J9	GRIN2A	SNP	Missense_Mutation	16	9934583	G	C	33	73
BRCA	TCGA-D8-A1J9	CDRT1	SNP	Missense_Mutation	17	15508621	C	T	31	57
BRCA	TCGA-D8-A1J9	GID4	SNP	Splice_site	17	17965159	G	A	41	99
BRCA	TCGA-D8-A1J9	DRG2	SNP	Missense_Mutation	17	17997277	C	G	32	100
BRCA	TCGA-D8-A1J9	SUPT6H	SNP	Missense_Mutation	17	27000441	G	A	37	99
BRCA	TCGA-D8-A1J9	RAB11FIP4	SNP	Missense_Mutation	17	29761087	G	C	41	62
BRCA	TCGA-D8-A1J9	ACACA	SNP	Missense_Mutation	17	35597396	C	G	32	71
BRCA	TCGA-D8-A1J9	CWC25	SNP	Missense_Mutation	17	36966009	C	A	32	67
BRCA	TCGA-D8-A1J9	GRB7	SNP	Missense_Mutation	17	37899229	G	C	45	81
BRCA	TCGA-D8-A1J9	KRT19	SNP	Silent	17	39680718	G	A	37	44
BRCA	TCGA-D8-A1J9	WNK4	SNP	Missense_Mutation	17	40948000	G	A	34	86
BRCA	TCGA-D8-A1J9	ACSF2	SNP	Missense_Mutation	17	48551306	C	T	31	64
BRCA	TCGA-D8-A1J9	USP6	SNP	Nonsense_Mutation	17	5048769	C	T	29	84
BRCA	TCGA-D8-A1J9	TP53	SNP	Missense_Mutation	17	7578413	C	A	17	97
BRCA	TCGA-D8-A1J9	MAPK4	SNP	Silent	18	48255621	G	A	38	51
BRCA	TCGA-D8-A1J9	ZNF532	SNP	Missense_Mutation	18	56587083	G	T	48	85
BRCA	TCGA-D8-A1J9	ZNF564	SNP	Silent	19	12638670	G	A	45	62
BRCA	TCGA-D8-A1J9	EPHX3	SNP	Missense_Mutation	19	15338655	C	T	31	87
BRCA	TCGA-D8-A1J9	NWD1	SNP	Missense_Mutation	19	16860225	C	G	29	84
BRCA	TCGA-D8-A1J9	USE1	SNP	Nonsense_Mutation	19	17330038	C	T	21	51
BRCA	TCGA-D8-A1J9	JAK3	SNP	Missense_Mutation	19	17949174	C	G	32	55
BRCA	TCGA-D8-A1J9	CYP2A7	SNP	Silent	19	41388071	C	T	29	50
BRCA	TCGA-D8-A1J9	CYP2A13	SNP	Silent	19	41595962	C	T	29	53
BRCA	TCGA-D8-A1J9	PSG4	SNP	Splice_site	19	43699148	G	A	33	47
BRCA	TCGA-D8-A1J9	SLC6A16	SNP	Silent	19	49796530	G	A	37	56
BRCA	TCGA-D8-A1J9	KLK10	SNP	Missense_Mutation	19	51518205	C	T	29	91
BRCA	TCGA-D8-A1J9	SIGLEC6	SNP	Silent	19	52032988	G	T	33	57
BRCA	TCGA-D8-A1J9	LILRB5	SNP	Missense_Mutation	19	54760586	G	A	37	13
BRCA	TCGA-D8-A1J9	ZSCAN5C	SNP	Nonsense_Mutation	19	56720231	C	T	29	50
BRCA	TCGA-D8-A1J9	ZNF460	SNP	Missense_Mutation	19	57802084	G	A	45	35
BRCA	TCGA-D8-A1J9	MUC16	SNP	Silent	19	8976844	C	T	29	56
BRCA	TCGA-D8-A1J9	ZNF846	SNP	Missense_Mutation	19	9868536	G	A	41	48
BRCA	TCGA-D8-A1J9	BCL2L11	SNP	Missense_Mutation	2	111907684	G	C	39	78
BRCA	TCGA-D8-A1J9	INHBB	SNP	Missense_Mutation	2	121106995	G	A	41	74
BRCA	TCGA-D8-A1J9	GPR39	SNP	Silent	2	133402996	C	G	32	73
BRCA	TCGA-D8-A1J9	THSD7B	SNP	Missense_Mutation	2	137852504	G	A	45	81
BRCA	TCGA-D8-A1J9	TNFAIP6	SNP	Silent	2	152230093	C	A	29	61
BRCA	TCGA-D8-A1J9	MARCH7	SNP	Missense_Mutation	2	160619400	G	C	45	75
BRCA	TCGA-D8-A1J9	LY75-CD302	SNP	Nonsense_Mutation	2	160667156	G	C	45	79
BRCA	TCGA-D8-A1J9	XIRP2	SNP	Nonsense_Mutation	2	168106216	C	T	29	70
BRCA	TCGA-D8-A1J9	TTN	SNP	Missense_Mutation	2	179469849	C	T	30	79
BRCA	TCGA-D8-A1J9	TTN	SNP	Missense_Mutation	2	179613383	G	C	45	57
BRCA	TCGA-D8-A1J9	SUMO1	SNP	Nonsense_Mutation	2	203079096	G	T	45	100
BRCA	TCGA-D8-A1J9	PIKFYVE	SNP	Missense_Mutation	2	209190674	C	G	25	88
BRCA	TCGA-D8-A1J9	UNC80	SNP	Nonsense_Mutation	2	210782561	C	G	29	100
BRCA	TCGA-D8-A1J9	ABCB6	SNP	Nonsense_Mutation	2	220080803	G	C	45	100
BRCA	TCGA-D8-A1J9	ABCB6	SNP	Missense_Mutation	2	220082409	C	A	32	86
BRCA	TCGA-D8-A1J9	FAM179A	SNP	Silent	2	29246027	G	A	46	52
BRCA	TCGA-D8-A1J9	HEATR5B	SNP	Silent	2	37284541	G	A	45	61
BRCA	TCGA-D8-A1J9	MSH2	SNP	Missense_Mutation	2	47693816	G	C	33	60
BRCA	TCGA-D8-A1J9	CCT4	SNP	Missense_Mutation	2	62099221	C	T	31	100
BRCA	TCGA-D8-A1J9	CCT4	SNP	Silent	2	62107467	G	A	45	58
BRCA	TCGA-D8-A1J9	WDPCP	SNP	Silent	2	63631703	G	A	39	61
BRCA	TCGA-D8-A1J9	ANKRD36	SNP	Missense_Mutation	2	97860646	C	A	32	55
BRCA	TCGA-D8-A1J9	JAG1	SNP	Nonsense_Mutation	20	10639266	G	A	45	100
BRCA	TCGA-D8-A1J9	NINL	SNP	Missense_Mutation	20	25436389	C	T	32	59
BRCA	TCGA-D8-A1J9	NINL	SNP	Silent	20	25443172	C	T	32	57
BRCA	TCGA-D8-A1J9	MYH7B	SNP	Splice_site	20	33586315	G	A	43	50
BRCA	TCGA-D8-A1J9	ZNF334	SNP	Missense_Mutation	20	45131108	C	G	32	52
BRCA	TCGA-D8-A1J9	SLC2A10	SNP	Missense_Mutation	20	45354882	C	T	31	49
BRCA	TCGA-D8-A1J9	STAU1	SNP	Missense_Mutation	20	47768247	G	C	45	98
BRCA	TCGA-D8-A1J9	SLC9A8	SNP	Missense_Mutation	20	48491270	C	G	31	48
BRCA	TCGA-D8-A1J9	PARD6B	SNP	Missense_Mutation	20	49366546	G	A	45	99
BRCA	TCGA-D8-A1J9	KRTAP10-4	SNP	Missense_Mutation	21	45994492	C	G	32	34
BRCA	TCGA-D8-A1J9	GGT1	SNP	Silent	22	25023394	G	A	39	52
BRCA	TCGA-D8-A1J9	HMGXB4	SNP	Missense_Mutation	22	35661391	A	G	3	45
BRCA	TCGA-D8-A1J9	SMC1B	SNP	Missense_Mutation	22	45785753	G	T	45	100
BRCA	TCGA-D8-A1J9	TUBGCP6	SNP	Silent	22	50665188	C	T	29	51
BRCA	TCGA-D8-A1J9	HMGB3	SNP	Nonsense_Mutation	23	150156319	A	T	1	66
BRCA	TCGA-D8-A1J9	MAGEA3	SNP	Missense_Mutation	23	151935227	C	T	32	58
BRCA	TCGA-D8-A1J9	BCAP31	SNP	Missense_Mutation	23	152986357	G	A	33	67
BRCA	TCGA-D8-A1J9	SSX6	SNP	Missense_Mutation	23	47976517	C	T	29	37
BRCA	TCGA-D8-A1J9	TSPYL2	SNP	Missense_Mutation	23	53115366	G	A	45	63
BRCA	TCGA-D8-A1J9	C3orf37	SNP	Missense_Mutation	3	128998666	G	C	41	57
BRCA	TCGA-D8-A1J9	C3orf37	SNP	Missense_Mutation	3	129007811	G	A	45	91
BRCA	TCGA-D8-A1J9	GPR149	SNP	Missense_Mutation	3	154055753	G	C	41	99
BRCA	TCGA-D8-A1J9	SLITRK3	SNP	Silent	3	164908085	C	T	29	49
BRCA	TCGA-D8-A1J9	ZBBX	SNP	Missense_Mutation	3	167051719	C	T	30	54
BRCA	TCGA-D8-A1J9	MASP1	SNP	Silent	3	187009524	C	T	32	80
BRCA	TCGA-D8-A1J9	STAC	SNP	Silent	3	36484978	G	A	33	52
BRCA	TCGA-D8-A1J9	PBRM1	SNP	Missense_Mutation	3	52584783	C	G	21	82
BRCA	TCGA-D8-A1J9	FAM208A	SNP	Nonsense_Mutation	3	56681156	G	A	45	64
BRCA	TCGA-D8-A1J9	OR5H14	SNP	Silent	3	97868793	T	C	56	65
BRCA	TCGA-D8-A1J9	HTT	SNP	Silent	4	3179079	G	A	45	55
BRCA	TCGA-D8-A1J9	AMBN	SNP	Missense_Mutation	4	71469607	G	C	33	78
BRCA	TCGA-D8-A1J9	PARP8	SNP	Missense_Mutation	5	50090091	C	G	30	77
BRCA	TCGA-D8-A1J9	HTR1A	SNP	Missense_Mutation	5	63256550	G	A	38	61
BRCA	TCGA-D8-A1J9	MAST4	SNP	Missense_Mutation	5	66398395	G	A	45	100
BRCA	TCGA-D8-A1J9	MARVELD2	SNP	Missense_Mutation	5	68728835	C	G	32	76
BRCA	TCGA-D8-A1J9	GPR98	SNP	Nonsense_Mutation	5	89981683	C	T	29	100
BRCA	TCGA-D8-A1J9	DSE	SNP	Silent	6	116757740	C	A	21	48
BRCA	TCGA-D8-A1J9	OR2A4	SNP	Silent	6	132022419	G	A	40	48
BRCA	TCGA-D8-A1J9	TXLNB	SNP	Missense_Mutation	6	139569014	G	C	41	58
BRCA	TCGA-D8-A1J9	SYNE1	SNP	Silent	6	152847287	G	A	40	49
BRCA	TCGA-D8-A1J9	KIF13A	SNP	Missense_Mutation	6	17773736	T	C	55	53
BRCA	TCGA-D8-A1J9	BTN3A3	SNP	Missense_Mutation	6	26452288	G	C	33	51
BRCA	TCGA-D8-A1J9	HIST1H2AM	SNP	Silent	6	27860646	G	A	45	61
BRCA	TCGA-D8-A1J9	DDR1	SNP	Silent	6	30864588	C	T	30	61
BRCA	TCGA-D8-A1J9	PTPRZ1	SNP	Missense_Mutation	7	121650745	C	G	30	59
BRCA	TCGA-D8-A1J9	CALD1	SNP	Missense_Mutation	7	134643006	G	C	45	95
BRCA	TCGA-D8-A1J9	HOXA6	SNP	Missense_Mutation	7	27185451	G	C	45	60
BRCA	TCGA-D8-A1J9	RBAK	SNP	Missense_Mutation	7	5103430	G	C	33	60
BRCA	TCGA-D8-A1J9	GTF2IRD2B	SNP	Missense_Mutation	7	74564242	G	C	33	45
BRCA	TCGA-D8-A1J9	BAIAP2L1	SNP	Missense_Mutation	7	97946565	C	T	31	55
BRCA	TCGA-D8-A1J9	TPD52	SNP	Nonsense_Mutation	8	80956423	G	C	45	99
BRCA	TCGA-D8-A1J9	MED27	SNP	Missense_Mutation	9	134736049	C	A	32	82
BRCA	TCGA-D8-A1J9	FREM1	SNP	Silent	9	14776228	C	T	29	92
BRCA	TCGA-D8-A1J9	TAF1L	SNP	Silent	9	32631492	G	C	45	50
BRCA	TCGA-D8-A1J9	TRPM6	SNP	Missense_Mutation	9	77397680	C	A	28	54
BRCA	TCGA-D8-A1J9	ZCCHC6	SNP	Missense_Mutation	9	88916365	G	C	45	59
BRCA	TCGA-D8-A1J9	ECM2	SNP	Missense_Mutation	9	95277329	G	A	33	50
BRCA	TCGA-D8-A1J9	HIATL2	SNP	Missense_Mutation	9	99721158	G	C	45	71
BRCA	TCGA-D8-A1JB	KIF21B	SNP	Silent	1	200959275	C	T	24	66
BRCA	TCGA-D8-A1JB	FBXO28	SNP	Missense_Mutation	1	224345435	G	A	39	91
BRCA	TCGA-D8-A1JB	FAM21C	SNP	Splice_site	10	46254848	A	T	11	68
BRCA	TCGA-D8-A1JB	THAP2	SNP	Missense_Mutation	12	72068026	G	T	44	63
BRCA	TCGA-D8-A1JB	SEZ6	SNP	Silent	17	27286098	C	A	23	31
BRCA	TCGA-D8-A1JB	RECQL5	SNP	Missense_Mutation	17	73624831	G	A	43	49
BRCA	TCGA-D8-A1JB	CDC37	SNP	Missense_Mutation	19	10502337	C	T	18	84
BRCA	TCGA-D8-A1JB	FXYD5	SNP	Missense_Mutation	19	35651628	G	T	33	48
BRCA	TCGA-D8-A1JB	HNRNPUL1	SNP	Missense_Mutation	19	41778020	C	A	18	56
BRCA	TCGA-D8-A1JB	SUPT7L	SNP	Missense_Mutation	2	27876556	T	G	56	66
BRCA	TCGA-D8-A1JB	CST9	SNP	Missense_Mutation	20	23584193	C	T	26	48
BRCA	TCGA-D8-A1JB	ARAF	SNP	Splice_Site	23	47422467	G	A	36	91
BRCA	TCGA-D8-A1JB	HPS3	SNP	Missense_Mutation	3	148877913	G	A	45	75
BRCA	TCGA-D8-A1JB	SI	SNP	Missense_Mutation	3	164710170	T	A	60	50
BRCA	TCGA-D8-A1JB	MUC4	SNP	Missense_Mutation	3	195506606	C	G	29	50
BRCA	TCGA-D8-A1JB	TOP2B	SNP	Silent	3	25668734	T	G	56	70
BRCA	TCGA-D8-A1JB	LRRFIP2	SNP	Missense_Mutation	3	37114294	T	C	50	89
BRCA	TCGA-D8-A1JB	CLDND1	SNP	Missense_Mutation	3	98240072	T	C	50	84
BRCA	TCGA-D8-A1JB	FAT1	SNP	Missense_Mutation	4	187518179	G	T	41	98
BRCA	TCGA-D8-A1JB	DOCK2	SNP	Missense_Mutation	5	169138958	A	T	10	93
BRCA	TCGA-D8-A1JB	GCNT2	SNP	Nonsense_Mutation	6	10556843	A	T	5	70
BRCA	TCGA-D8-A1JB	AHI1	SNP	Missense_Mutation	6	135751072	G	A	40	71
BRCA	TCGA-D8-A1JC	MAB21L3	SNP	Missense_Mutation	1	116670894	G	C	45	62
BRCA	TCGA-D8-A1JC	PDE4DIP	SNP	Missense_Mutation	1	144952346	G	A	38	55
BRCA	TCGA-D8-A1JC	PVRL4	SNP	Missense_Mutation	1	161043062	C	G	31	73
BRCA	TCGA-D8-A1JC	C1orf226	SNP	Silent	1	162351892	G	A	41	53
BRCA	TCGA-D8-A1JC	ASTN1	SNP	Silent	1	176863701	C	T	32	55
BRCA	TCGA-D8-A1JC	RASAL2	SNP	Missense_Mutation	1	178408562	G	A	40	77
BRCA	TCGA-D8-A1JC	PRG4	SNP	Silent	1	186280194	C	T	29	53
BRCA	TCGA-D8-A1JC	SRGAP2	SNP	Missense_Mutation	1	206619542	G	C	45	100
BRCA	TCGA-D8-A1JC	IL20	SNP	Missense_Mutation	1	207039354	G	A	48	57
BRCA	TCGA-D8-A1JC	C1orf198	SNP	Missense_Mutation	1	230979431	C	T	31	63
BRCA	TCGA-D8-A1JC	KCNQ4	SNP	Silent	1	41300696	C	T	19	55
BRCA	TCGA-D8-A1JC	TET1	SNP	Missense_Mutation	10	70333071	G	A	48	52
BRCA	TCGA-D8-A1JC	DCDC5	DEL	Silent	11	30900183	ATGTCTGTGGC	-	4	49
BRCA	TCGA-D8-A1JC	ABTB2	SNP	Splice_Site	11	34192619	C	T	32	99
BRCA	TCGA-D8-A1JC	LRP4	SNP	Missense_Mutation	11	46920500	C	G	31	99
BRCA	TCGA-D8-A1JC	P4HA3	SNP	Missense_Mutation	11	73978162	C	T	27	51
BRCA	TCGA-D8-A1JC	ADAMTS20	SNP	Missense_Mutation	12	43823449	C	T	26	57
BRCA	TCGA-D8-A1JC	LRRIQ1	SNP	Missense_Mutation	12	85438525	C	T	29	58
BRCA	TCGA-D8-A1JC	SACS	SNP	Missense_Mutation	13	23915127	G	C	33	100
BRCA	TCGA-D8-A1JC	MMP14	SNP	Missense_Mutation	14	23311622	C	G	30	56
BRCA	TCGA-D8-A1JC	TGM1	SNP	Missense_Mutation	14	24729190	C	T	23	98
BRCA	TCGA-D8-A1JC	RALGAPA1	SNP	Nonsense_Mutation	14	36192403	A	T	13	92
BRCA	TCGA-D8-A1JC	TC2N	SNP	Missense_Mutation	14	92268677	G	C	33	72
BRCA	TCGA-D8-A1JC	CATSPER2	SNP	Missense_Mutation	15	43940189	T	A	50	63
BRCA	TCGA-D8-A1JC	FAM227B	SNP	Silent	15	49659665	G	A	45	50
BRCA	TCGA-D8-A1JC	KIF23	SNP	Missense_Mutation	15	69733225	G	C	47	100
BRCA	TCGA-D8-A1JC	MPI	SNP	Silent	15	75188521	C	T	32	56
BRCA	TCGA-D8-A1JC	ERCC4	SNP	Missense_Mutation	16	14024573	C	T	23	97
BRCA	TCGA-D8-A1JC	DNAH3	SNP	Missense_Mutation	16	20976523	C	T	31	100
BRCA	TCGA-D8-A1JC	TSC2	SNP	Silent	16	2134403	C	T	32	53
BRCA	TCGA-D8-A1JC	CD19	DEL	Frame_Shift_Del	16	28948602	AGAG	-	3	49
BRCA	TCGA-D8-A1JC	MVP	SNP	Silent	16	29853120	C	T	19	36
BRCA	TCGA-D8-A1JC	CTCF	SNP	Silent	16	67662443	A	T	8	65
BRCA	TCGA-D8-A1JC	GRIN2A	SNP	Missense_Mutation	16	9857878	C	T	29	65
BRCA	TCGA-D8-A1JC	MYH13	SNP	Splice_site	17	10265677	G	A	40	52
BRCA	TCGA-D8-A1JC	MYH8	SNP	Missense_Mutation	17	10312639	C	A	32	61
BRCA	TCGA-D8-A1JC	CD300LG	SNP	Nonsense_Mutation	17	41939193	C	T	21	61
BRCA	TCGA-D8-A1JC	AXIN2	SNP	Missense_Mutation	17	63554225	C	G	29	97
BRCA	TCGA-D8-A1JC	EPOR	SNP	Missense_Mutation	19	11489402	C	G	29	52
BRCA	TCGA-D8-A1JC	ZNF44	DEL	Frame_Shift_Del	19	12384085	TCATGTGTCT	-	50	63
BRCA	TCGA-D8-A1JC	DNAJB1	SNP	Missense_Mutation	19	14627556	G	T	35	93
BRCA	TCGA-D8-A1JC	NCR1	SNP	Silent	19	55420647	A	G	3	54
BRCA	TCGA-D8-A1JC	CAMSAP3	SNP	Missense_Mutation	19	7676908	C	T	30	57
BRCA	TCGA-D8-A1JC	IL18R1	SNP	Missense_Mutation	2	102998106	C	G	32	49
BRCA	TCGA-D8-A1JC	SLC4A3	SNP	Missense_Mutation	2	220501075	C	A	28	73
BRCA	TCGA-D8-A1JC	D2HGDH	SNP	Silent	2	242707333	G	A	47	74
BRCA	TCGA-D8-A1JC	MRPL53	SNP	Missense_Mutation	2	74699368	G	A	37	74
BRCA	TCGA-D8-A1JC	USP39	SNP	Splice_Site	2	85848451	T	G	59	55
BRCA	TCGA-D8-A1JC	RMND5A	SNP	Missense_Mutation	2	86993049	C	A	18	66
BRCA	TCGA-D8-A1JC	KIAA1210	SNP	Missense_Mutation	23	118215410	C	T	31	40
BRCA	TCGA-D8-A1JC	HCFC1	SNP	Missense_Mutation	23	153219201	C	T	31	71
BRCA	TCGA-D8-A1JC	F8	SNP	Missense_Mutation	23	154124399	C	A	21	70
BRCA	TCGA-D8-A1JC	RPGR	SNP	Missense_Mutation	23	38156545	T	A	54	42
BRCA	TCGA-D8-A1JC	NLGN4X	SNP	Missense_Mutation	23	5811360	G	A	33	64
BRCA	TCGA-D8-A1JC	VSIG4	SNP	Silent	23	65247938	G	A	45	40
BRCA	TCGA-D8-A1JC	TRMT10C	SNP	Missense_Mutation	3	101284455	C	T	32	68
BRCA	TCGA-D8-A1JC	KIAA2018	SNP	Missense_Mutation	3	113375166	C	T	19	84
BRCA	TCGA-D8-A1JC	MRPL3	SNP	Silent	3	131188558	C	T	30	62
BRCA	TCGA-D8-A1JC	PIK3CB	SNP	Missense_Mutation	3	138374293	C	T	30	100
BRCA	TCGA-D8-A1JC	CNTN6	SNP	Missense_Mutation	3	1414111	G	A	48	41
BRCA	TCGA-D8-A1JC	MRPS25	SNP	Nonsense_Mutation	3	15094076	G	A	37	58
BRCA	TCGA-D8-A1JC	SMC4	SNP	Missense_Mutation	3	160141276	G	C	45	89
BRCA	TCGA-D8-A1JC	RBM6	SNP	Missense_Mutation	3	50091779	C	G	17	57
BRCA	TCGA-D8-A1JC	HADH	SNP	Missense_Mutation	4	108954346	G	A	33	100
BRCA	TCGA-D8-A1JC	FREM3	SNP	Silent	4	144617794	G	A	41	51
BRCA	TCGA-D8-A1JC	TRIML1	SNP	Missense_Mutation	4	189061035	A	T	10	66
BRCA	TCGA-D8-A1JC	PCDHB3	SNP	Missense_Mutation	5	140482555	C	A	31	50
BRCA	TCGA-D8-A1JC	CAMK2A	SNP	Missense_Mutation	5	149637130	C	T	31	100
BRCA	TCGA-D8-A1JC	PDZD2	SNP	Missense_Mutation	5	31799670	G	C	33	71
BRCA	TCGA-D8-A1JC	NIPBL	SNP	Nonsense_Mutation	5	37020923	C	T	31	69
BRCA	TCGA-D8-A1JC	DAB2	SNP	Silent	5	39383284	G	A	46	67
BRCA	TCGA-D8-A1JC	FAM81B	SNP	Missense_Mutation	5	94749730	A	G	8	51
BRCA	TCGA-D8-A1JC	GOPC	SNP	Missense_Mutation	6	117894762	C	T	29	100
BRCA	TCGA-D8-A1JC	NKAIN2	SNP	Missense_Mutation	6	124604227	T	A	52	93
BRCA	TCGA-D8-A1JC	EYA4	SNP	Missense_Mutation	6	133783840	G	A	36	98
BRCA	TCGA-D8-A1JC	TBX18	SNP	Missense_Mutation	6	85466511	G	A	41	100
BRCA	TCGA-D8-A1JC	NAMPT	SNP	Missense_Mutation	7	105893591	C	G	19	98
BRCA	TCGA-D8-A1JC	PCLO	SNP	Missense_Mutation	7	82544011	C	G	32	100
BRCA	TCGA-D8-A1JC	FBXO32	SNP	Silent	8	124526556	T	C	63	56
BRCA	TCGA-D8-A1JC	KCNQ3	SNP	Silent	8	133192479	G	A	41	58
BRCA	TCGA-D8-A1JC	CYP11B1	SNP	Silent	8	143957771	G	A	45	17
BRCA	TCGA-D8-A1JC	PPAPDC1B	SNP	Missense_Mutation	8	38124737	C	G	29	62
BRCA	TCGA-D8-A1JC	RBM12B	SNP	Silent	8	94747082	G	A	36	50
BRCA	TCGA-D8-A1JC	FANCG	SNP	Silent	9	35076497	T	C	59	38
BRCA	TCGA-D8-A1JD	OR6P1	SNP	Missense_Mutation	1	158532878	T	A	51	47
BRCA	TCGA-D8-A1JD	ABL2	SNP	Missense_Mutation	1	179090960	G	A	34	94
BRCA	TCGA-D8-A1JD	IKBKE	SNP	Missense_Mutation	1	206658614	G	T	33	77
BRCA	TCGA-D8-A1JD	CR2	DEL	Frame_Shift_Del	1	207653332	CAGGTTTGATA	-	25	47
BRCA	TCGA-D8-A1JD	RAB4A	SNP	Silent	1	229434758	G	A	43	56
BRCA	TCGA-D8-A1JD	NIPAL3	SNP	Missense_Mutation	1	24768672	C	T	27	85
BRCA	TCGA-D8-A1JD	ARID1A	SNP	Silent	1	27106230	G	T	33	71
BRCA	TCGA-D8-A1JD	NFYC	SNP	Missense_Mutation	1	41236337	C	T	24	67
BRCA	TCGA-D8-A1JD	NPHP4	SNP	Silent	1	5940238	G	A	45	63
BRCA	TCGA-D8-A1JD	PKN2	SNP	Missense_Mutation	1	89294223	G	C	33	96
BRCA	TCGA-D8-A1JD	STAM	SNP	Silent	10	17686365	C	T	31	63
BRCA	TCGA-D8-A1JD	NEBL	SNP	Splice_Site	10	21177025	C	A	18	87
BRCA	TCGA-D8-A1JD	WDFY4	SNP	Missense_Mutation	10	50036827	C	G	22	69
BRCA	TCGA-D8-A1JD	ABCG4	SNP	Missense_Mutation	11	119029289	T	G	51	70
BRCA	TCGA-D8-A1JD	PDE3B	SNP	Missense_Mutation	11	14854289	G	C	33	97
BRCA	TCGA-D8-A1JD	TSG101	SNP	Silent	11	18503243	T	C	56	60
BRCA	TCGA-D8-A1JD	ZFP91	SNP	Missense_Mutation	11	58384907	G	A	33	79
BRCA	TCGA-D8-A1JD	IQCD	SNP	Nonsense_Mutation	12	113633598	G	A	46	78
BRCA	TCGA-D8-A1JD	SDSL	SNP	Missense_Mutation	12	113875830	C	A	17	68
BRCA	TCGA-D8-A1JD	SLCO1B7	SNP	Missense_Mutation	12	21207557	G	A	40	48
BRCA	TCGA-D8-A1JD	ASIC1	SNP	Silent	12	50453668	C	T	19	56
BRCA	TCGA-D8-A1JD	ACSM4	SNP	Missense_Mutation	12	7480932	G	A	38	63
BRCA	TCGA-D8-A1JD	B3GALTL	SNP	Silent	13	31891805	C	T	17	70
BRCA	TCGA-D8-A1JD	PLEK2	SNP	Missense_Mutation	14	67864511	C	A	18	99
BRCA	TCGA-D8-A1JD	TLN2	SNP	Splice_site	15	63097800	T	G	59	93
BRCA	TCGA-D8-A1JD	CILP	SNP	Missense_Mutation	15	65494258	T	C	54	57
BRCA	TCGA-D8-A1JD	CSPG4	SNP	Silent	15	75977998	C	A	29	52
BRCA	TCGA-D8-A1JD	KIAA1199	SNP	Silent	15	81212548	C	A	22	55
BRCA	TCGA-D8-A1JD	WDR93	SNP	Missense_Mutation	15	90270408	C	A	24	52
BRCA	TCGA-D8-A1JD	KIF22	SNP	Missense_Mutation	16	29815348	G	A	37	43
BRCA	TCGA-D8-A1JD	PMFBP1	SNP	Missense_Mutation	16	72157496	C	T	31	54
BRCA	TCGA-D8-A1JD	BCAR1	SNP	Nonsense_Mutation	16	75267803	C	A	30	69
BRCA	TCGA-D8-A1JD	TMEM170A	SNP	Nonsense_Mutation	16	75485730	C	T	18	81
BRCA	TCGA-D8-A1JD	CDYL2	SNP	Missense_Mutation	16	80667011	A	C	7	83
BRCA	TCGA-D8-A1JD	ZNF624	SNP	Missense_Mutation	17	16526967	A	T	8	50
BRCA	TCGA-D8-A1JD	SMYD4	SNP	Missense_Mutation	17	1707930	C	T	18	57
BRCA	TCGA-D8-A1JD	SREBF1	SNP	Missense_Mutation	17	17721600	C	G	20	60
BRCA	TCGA-D8-A1JD	SLFN13	SNP	Missense_Mutation	17	33768644	A	C	9	51
BRCA	TCGA-D8-A1JD	C17orf104	SNP	Missense_Mutation	17	42744064	A	C	9	80
BRCA	TCGA-D8-A1JD	PLEKHM1	SNP	Missense_Mutation	17	43516865	A	C	3	87
BRCA	TCGA-D8-A1JD	NSFP1	SNP	Silent	17	44552565	G	T	34	90
BRCA	TCGA-D8-A1JD	GIP	SNP	Missense_Mutation	17	47044526	C	G	32	54
BRCA	TCGA-D8-A1JD	SAMD14	SNP	Missense_Mutation	17	48191628	G	T	43	71
BRCA	TCGA-D8-A1JD	TRAPPC8	SNP	Missense_Mutation	18	29426707	T	A	64	53
BRCA	TCGA-D8-A1JD	OR10H4	SNP	Missense_Mutation	19	16060202	C	A	21	54
BRCA	TCGA-D8-A1JD	ZNF790	SNP	Missense_Mutation	19	37309690	G	A	45	61
BRCA	TCGA-D8-A1JD	ACTN4	SNP	Missense_Mutation	19	39219642	G	A	42	79
BRCA	TCGA-D8-A1JD	SAFB2	DEL	In_Frame_Del	19	5587279	TAC	-	57	58
BRCA	TCGA-D8-A1JD	PEX11G	SNP	Missense_Mutation	19	7550870	G	T	33	70
BRCA	TCGA-D8-A1JD	AFF3	SNP	Missense_Mutation	2	100199290	G	T	42	55
BRCA	TCGA-D8-A1JD	ABCB11	SNP	Missense_Mutation	2	169791842	G	A	42	74
BRCA	TCGA-D8-A1JD	COL6A3	SNP	Missense_Mutation	2	238283417	G	A	43	68
BRCA	TCGA-D8-A1JD	KIF1A	SNP	Splice_Site	2	241710387	C	A	18	95
BRCA	TCGA-D8-A1JD	SMEK2	SNP	Missense_Mutation	2	55825928	C	G	25	100
BRCA	TCGA-D8-A1JD	CAPG	SNP	Missense_Mutation	2	85628923	G	C	33	72
BRCA	TCGA-D8-A1JD	TAF7L	SNP	Missense_Mutation	23	100530996	T	A	58	54
BRCA	TCGA-D8-A1JD	TAZ	SNP	Missense_Mutation	23	153642519	G	A	33	59
BRCA	TCGA-D8-A1JD	SSX6	SNP	Silent	23	47969393	A	G	10	48
BRCA	TCGA-D8-A1JD	STARD8	SNP	Missense_Mutation	23	67937723	G	C	41	48
BRCA	TCGA-D8-A1JD	MAGEE1	DEL	Frame_Shift_Del	23	75649889	TA	-	61	46
BRCA	TCGA-D8-A1JD	RETNLB	INS	Frame_Shift_Ins	3	108476001	-	GG	15	49
BRCA	TCGA-D8-A1JD	CD200R1	SNP	Silent	3	112666767	C	T	23	44
BRCA	TCGA-D8-A1JD	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A1JD	PIK3CA	SNP	Missense_Mutation	3	178938934	G	A	45	98
BRCA	TCGA-D8-A1JD	PIK3CA	SNP	Missense_Mutation	3	178951957	G	A	45	100
BRCA	TCGA-D8-A1JD	IL5RA	SNP	Missense_Mutation	3	3144387	A	T	6	73
BRCA	TCGA-D8-A1JD	XCR1	SNP	Silent	3	46063167	G	A	44	57
BRCA	TCGA-D8-A1JD	DCHS2	DEL	Splice_site	4	155191053	TGACT	-	55	65
BRCA	TCGA-D8-A1JD	GALNT7	SNP	Missense_Mutation	4	174169552	T	A	50	93
BRCA	TCGA-D8-A1JD	NPFFR2	SNP	Missense_Mutation	4	73013422	C	G	29	61
BRCA	TCGA-D8-A1JD	GPRIN3	SNP	Silent	4	90169141	G	T	37	49
BRCA	TCGA-D8-A1JD	RAP1GDS1	SNP	Missense_Mutation	4	99358139	A	G	8	88
BRCA	TCGA-D8-A1JD	SLC36A2	SNP	Missense_Mutation	5	150704868	C	T	28	84
BRCA	TCGA-D8-A1JD	SLC34A1	SNP	Silent	5	176815139	T	A	54	52
BRCA	TCGA-D8-A1JD	BET3L	SNP	Missense_Mutation	6	116821736	G	T	35	54
BRCA	TCGA-D8-A1JD	SYNE1	SNP	Missense_Mutation	6	152671436	T	G	58	91
BRCA	TCGA-D8-A1JD	CYP21A2	SNP	Missense_Mutation	6	32007206	G	A	48	59
BRCA	TCGA-D8-A1JD	DEFB133	SNP	Silent	6	49917113	G	T	41	45
BRCA	TCGA-D8-A1JD	DNAH11	SNP	Splice_Site	7	21640549	G	A	42	96
BRCA	TCGA-D8-A1JD	PKD1L1	SNP	Missense_Mutation	7	47925506	C	T	19	28
BRCA	TCGA-D8-A1JD	CDK14	SNP	Silent	7	90585061	G	C	47	68
BRCA	TCGA-D8-A1JD	HGSNAT	SNP	Missense_Mutation	8	43046629	C	G	24	48
BRCA	TCGA-D8-A1JD	VAV2	SNP	Missense_Mutation	9	136649470	T	G	59	84
BRCA	TCGA-D8-A1JE	CDK11A	SNP	Missense_Mutation	1	1638858	G	A	39	81
BRCA	TCGA-D8-A1JE	C1orf129	SNP	Splice_site	1	170940889	A	G	12	40
BRCA	TCGA-D8-A1JE	DHX9	SNP	Missense_Mutation	1	182849707	G	A	40	96
BRCA	TCGA-D8-A1JE	KIF14	SNP	Missense_Mutation	1	200584501	C	A	26	99
BRCA	TCGA-D8-A1JE	GPATCH2	SNP	Missense_Mutation	1	217793197	T	C	62	90
BRCA	TCGA-D8-A1JE	MKI67	SNP	Missense_Mutation	10	129903220	T	C	52	39
BRCA	TCGA-D8-A1JE	MYO3A	SNP	Splice_Site	10	26446238	G	A	36	100
BRCA	TCGA-D8-A1JE	FRMPD2	SNP	Missense_Mutation	10	49389016	T	C	53	52
BRCA	TCGA-D8-A1JE	ANK3	SNP	Missense_Mutation	10	61833948	T	C	63	72
BRCA	TCGA-D8-A1JE	ANK3	SNP	Missense_Mutation	10	61835214	A	T	12	62
BRCA	TCGA-D8-A1JE	SYT8	SNP	Missense_Mutation	11	1855822	G	T	42	52
BRCA	TCGA-D8-A1JE	MSI1	SNP	Missense_Mutation	12	120794783	G	A	42	94
BRCA	TCGA-D8-A1JE	DDX55	SNP	Missense_Mutation	12	124094511	C	G	26	100
BRCA	TCGA-D8-A1JE	KIAA0430	SNP	Silent	16	15702217	T	A	51	24
BRCA	TCGA-D8-A1JE	ANKS4B	SNP	Missense_Mutation	16	21261144	A	T	2	64
BRCA	TCGA-D8-A1JE	FUK	SNP	Missense_Mutation	16	70497609	A	C	7	87
BRCA	TCGA-D8-A1JE	NLRP8	SNP	Missense_Mutation	19	56466488	C	T	23	44
BRCA	TCGA-D8-A1JE	IGFBP2	SNP	Missense_Mutation	2	217525400	T	C	55	75
BRCA	TCGA-D8-A1JE	DNMT3A	SNP	Missense_Mutation	2	25457218	C	T	26	99
BRCA	TCGA-D8-A1JE	BPIFA2	SNP	Silent	20	31756984	C	T	27	45
BRCA	TCGA-D8-A1JE	L3MBTL1	SNP	Silent	20	42143725	G	A	40	39
BRCA	TCGA-D8-A1JE	L3MBTL1	SNP	Silent	20	42161475	G	A	40	11
BRCA	TCGA-D8-A1JE	SEC14L6	SNP	Missense_Mutation	22	30921905	C	T	30	90
BRCA	TCGA-D8-A1JE	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-D8-A1JE	ACVR2B	SNP	Nonsense_Mutation	3	38520670	A	T	9	69
BRCA	TCGA-D8-A1JE	CIDEC	SNP	Silent	3	9911640	G	A	40	43
BRCA	TCGA-D8-A1JE	FAT4	DEL	Frame_Shift_Del	4	126320040	TA	-	61	49
BRCA	TCGA-D8-A1JE	PCDHA1	SNP	Silent	5	140167729	G	A	38	38
BRCA	TCGA-D8-A1JE	GPR98	SNP	Missense_Mutation	5	89970042	C	T	29	99
BRCA	TCGA-D8-A1JE	ZNF451	SNP	Missense_Mutation	6	57012098	C	A	27	55
BRCA	TCGA-D8-A1JE	KIF13B	SNP	Missense_Mutation	8	28981618	C	T	19	94
BRCA	TCGA-D8-A1JE	NRG1	SNP	Missense_Mutation	8	32620793	G	T	33	75
BRCA	TCGA-D8-A1JE	PSIP1	SNP	Missense_Mutation	9	15490026	C	A	22	100
BRCA	TCGA-D8-A1JE	CTSL2	SNP	Missense_Mutation	9	99797047	G	A	46	48
BRCA	TCGA-D8-A1JF	PTPN22	SNP	Silent	1	114377000	T	A	51	46
BRCA	TCGA-D8-A1JF	CENPF	SNP	Splice_Site	1	214832191	A	G	15	82
BRCA	TCGA-D8-A1JF	CELA3B	SNP	Missense_Mutation	1	22304922	C	T	27	72
BRCA	TCGA-D8-A1JF	SRSF11	SNP	Missense_Mutation	1	70712533	G	C	40	97
BRCA	TCGA-D8-A1JF	ARID5B	SNP	Missense_Mutation	10	63851397	G	C	43	60
BRCA	TCGA-D8-A1JF	OR5I1	SNP	Missense_Mutation	11	55703086	G	C	43	64
BRCA	TCGA-D8-A1JF	OTUB1	SNP	Missense_Mutation	11	63753882	G	C	39	50
BRCA	TCGA-D8-A1JF	GRM5	SNP	Missense_Mutation	11	88583174	C	T	26	95
BRCA	TCGA-D8-A1JF	KDM4E	SNP	Nonsense_Mutation	11	94759549	C	A	18	59
BRCA	TCGA-D8-A1JF	DENND5B	SNP	Silent	12	31579329	T	C	62	44
BRCA	TCGA-D8-A1JF	KIF21A	INS	Frame_Shift_Ins	12	39734847	-	TTAA	28	71
BRCA	TCGA-D8-A1JF	ANO6	SNP	Missense_Mutation	12	45781974	G	A	38	79
BRCA	TCGA-D8-A1JF	CILP	SNP	Missense_Mutation	15	65490682	C	T	31	85
BRCA	TCGA-D8-A1JF	USP10	SNP	Missense_Mutation	16	84778300	G	T	46	55
BRCA	TCGA-D8-A1JF	TP53	SNP	Missense_Mutation	17	7578394	T	C	51	89
BRCA	TCGA-D8-A1JF	PER1	SNP	Missense_Mutation	17	8051116	G	A	47	68
BRCA	TCGA-D8-A1JF	FHOD3	SNP	Missense_Mutation	18	34297797	T	G	64	49
BRCA	TCGA-D8-A1JF	ZNF564	INS	Frame_Shift_Ins	19	12639170	-	T	8	64
BRCA	TCGA-D8-A1JF	DMPK	SNP	Missense_Mutation	19	46282601	T	G	54	85
BRCA	TCGA-D8-A1JF	SCN2A	SNP	Missense_Mutation	2	166221684	G	A	34	100
BRCA	TCGA-D8-A1JF	MSGN1	SNP	Missense_Mutation	2	17997955	C	T	32	66
BRCA	TCGA-D8-A1JF	COMMD7	SNP	Missense_Mutation	20	31294404	G	A	42	79
BRCA	TCGA-D8-A1JF	C20orf132	SNP	Missense_Mutation	20	35731179	G	C	33	65
BRCA	TCGA-D8-A1JF	APCDD1L	SNP	Missense_Mutation	20	57036021	C	T	19	92
BRCA	TCGA-D8-A1JF	DSCAM	SNP	Silent	21	41710185	G	A	44	41
BRCA	TCGA-D8-A1JF	SAGE1	SNP	Missense_Mutation	23	134992588	C	T	29	57
BRCA	TCGA-D8-A1JF	GRIPAP1	SNP	Silent	23	48853758	T	A	49	45
BRCA	TCGA-D8-A1JF	CLCN5	SNP	Missense_Mutation	23	49845354	G	A	48	96
BRCA	TCGA-D8-A1JF	CCNB3	SNP	Silent	23	50031866	A	C	7	52
BRCA	TCGA-D8-A1JF	ABCB7	SNP	Splice_site	23	74376106	A	G	8	68
BRCA	TCGA-D8-A1JF	FNDC3B	SNP	Silent	3	172098814	A	G	8	56
BRCA	TCGA-D8-A1JF	PIK3CA	SNP	Missense_Mutation	3	178927430	G	A	40	83
BRCA	TCGA-D8-A1JF	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A1JF	DSPP	SNP	Silent	4	88537105	C	T	27	43
BRCA	TCGA-D8-A1JF	PCDHA2	SNP	Missense_Mutation	5	140174848	C	T	27	50
BRCA	TCGA-D8-A1JF	ANKRA2	SNP	Missense_Mutation	5	72858604	G	A	41	69
BRCA	TCGA-D8-A1JF	HBS1L	SNP	Missense_Mutation	6	135358867	C	G	32	51
BRCA	TCGA-D8-A1JF	IL22RA2	SNP	Silent	6	137482869	G	A	34	57
BRCA	TCGA-D8-A1JF	ZNF76	SNP	Silent	6	35261689	G	A	34	89
BRCA	TCGA-D8-A1JF	EGFR	SNP	Missense_Mutation	7	55211097	G	A	37	84
BRCA	TCGA-D8-A1JF	DLC1	SNP	Missense_Mutation	8	12956964	G	T	43	61
BRCA	TCGA-D8-A1JF	CLU	SNP	Missense_Mutation	8	27461880	T	C	50	73
BRCA	TCGA-D8-A1JF	UBAP2	INS	In_Frame_Ins	9	33923840	-	GGG	15	91
BRCA	TCGA-D8-A1JF	SPTLC1	SNP	Missense_Mutation	9	94809915	A	C	10	70
BRCA	TCGA-D8-A1JG	PRAMEF12	SNP	Missense_Mutation	1	12835814	C	T	23	31
BRCA	TCGA-D8-A1JG	PRAMEF11	SNP	Missense_Mutation	1	12885009	A	C	3	45
BRCA	TCGA-D8-A1JG	FCRL3	SNP	Missense_Mutation	1	157650537	T	C	50	45
BRCA	TCGA-D8-A1JG	FMO2	SNP	Nonsense_Mutation	1	171162534	G	T	33	86
BRCA	TCGA-D8-A1JG	PAX7	SNP	Missense_Mutation	1	19018346	C	A	28	82
BRCA	TCGA-D8-A1JG	F13B	SNP	Missense_Mutation	1	197032127	A	C	1	80
BRCA	TCGA-D8-A1JG	UBE2T	SNP	Missense_Mutation	1	202304779	C	T	31	59
BRCA	TCGA-D8-A1JG	PLEKHA6	SNP	Missense_Mutation	1	204192633	G	A	40	79
BRCA	TCGA-D8-A1JG	G0S2	SNP	Missense_Mutation	1	209849295	C	A	19	54
BRCA	TCGA-D8-A1JG	MARK1	SNP	Silent	1	220824018	G	A	41	56
BRCA	TCGA-D8-A1JG	RGS7	SNP	Missense_Mutation	1	240969623	G	T	33	79
BRCA	TCGA-D8-A1JG	CHML	SNP	Nonsense_Mutation	1	241798027	C	A	32	64
BRCA	TCGA-D8-A1JG	PGBD2	SNP	Missense_Mutation	1	249212333	G	A	39	61
BRCA	TCGA-D8-A1JG	SYTL1	SNP	Silent	1	27680340	G	A	40	44
BRCA	TCGA-D8-A1JG	C1orf141	SNP	Nonsense_Mutation	1	67581050	C	A	32	55
BRCA	TCGA-D8-A1JG	DRD2	SNP	Missense_Mutation	11	113283314	C	G	30	89
BRCA	TCGA-D8-A1JG	ARNTL	SNP	Missense_Mutation	11	13381930	A	T	2	72
BRCA	TCGA-D8-A1JG	MRGPRX3	SNP	Silent	11	18158830	C	A	22	73
BRCA	TCGA-D8-A1JG	MADD	SNP	Missense_Mutation	11	47345258	G	A	39	98
BRCA	TCGA-D8-A1JG	OR51A2	SNP	Missense_Mutation	11	4976079	T	G	62	80
BRCA	TCGA-D8-A1JG	WDR66	SNP	Silent	12	122441598	C	T	29	72
BRCA	TCGA-D8-A1JG	CCDC62	SNP	Missense_Mutation	12	123262167	C	T	32	75
BRCA	TCGA-D8-A1JG	SBNO1	SNP	Missense_Mutation	12	123815832	T	G	52	72
BRCA	TCGA-D8-A1JG	TMEM132D	SNP	Missense_Mutation	12	130184703	G	A	40	62
BRCA	TCGA-D8-A1JG	POLE	SNP	Missense_Mutation	12	133250250	G	C	33	79
BRCA	TCGA-D8-A1JG	CAPRIN2	SNP	Missense_Mutation	12	30888067	C	T	31	63
BRCA	TCGA-D8-A1JG	NAV3	SNP	Missense_Mutation	12	78443778	G	T	33	100
BRCA	TCGA-D8-A1JG	NEK3	SNP	Silent	13	52707287	G	A	38	49
BRCA	TCGA-D8-A1JG	NFATC4	SNP	Nonsense_Mutation	14	24845639	C	A	27	41
BRCA	TCGA-D8-A1JG	LRFN5	SNP	Missense_Mutation	14	42356316	C	A	24	96
BRCA	TCGA-D8-A1JG	FKBP3	SNP	Missense_Mutation	14	45599056	T	G	64	61
BRCA	TCGA-D8-A1JG	PLEKHH1	SNP	Missense_Mutation	14	68042162	C	G	32	62
BRCA	TCGA-D8-A1JG	SIPA1L1	SNP	Silent	14	72085583	A	C	9	47
BRCA	TCGA-D8-A1JG	ZC3H14	SNP	Missense_Mutation	14	89038412	G	C	45	91
BRCA	TCGA-D8-A1JG	DICER1	SNP	Missense_Mutation	14	95582133	G	A	37	99
BRCA	TCGA-D8-A1JG	BCL11B	SNP	Silent	14	99697761	G	A	38	51
BRCA	TCGA-D8-A1JG	DHX38	SNP	Silent	16	72130772	C	T	27	51
BRCA	TCGA-D8-A1JG	C17orf97	SNP	Silent	17	262973	G	A	38	36
BRCA	TCGA-D8-A1JG	SUZ12	SNP	Missense_Mutation	17	30321730	C	G	32	98
BRCA	TCGA-D8-A1JG	PCGF2	DEL	Frame_Shift_Del	17	36895484	TGTCT	-	51	73
BRCA	TCGA-D8-A1JG	RARA	SNP	Silent	17	38508726	C	T	29	73
BRCA	TCGA-D8-A1JG	CCR7	SNP	Missense_Mutation	17	38721654	A	T	7	59
BRCA	TCGA-D8-A1JG	TP53	SNP	Missense_Mutation	17	7577073	G	A	33	49
BRCA	TCGA-D8-A1JG	CTAGE1	SNP	Missense_Mutation	18	19995860	G	T	33	55
BRCA	TCGA-D8-A1JG	NPC1	SNP	Missense_Mutation	18	21140315	G	A	47	88
BRCA	TCGA-D8-A1JG	PIAS2	INS	Frame_Shift_Ins	18	44416348	-	T	28	100
BRCA	TCGA-D8-A1JG	TXNL1	SNP	Missense_Mutation	18	54281805	T	G	64	68
BRCA	TCGA-D8-A1JG	TSHZ1	SNP	Missense_Mutation	18	73000318	A	G	8	91
BRCA	TCGA-D8-A1JG	ZNF99	SNP	Nonsense_Mutation	19	22941531	G	A	48	51
BRCA	TCGA-D8-A1JG	ZNF546	SNP	Missense_Mutation	19	40519819	G	T	33	65
BRCA	TCGA-D8-A1JG	KLK11	SNP	Nonsense_Mutation	19	51526351	G	T	42	68
BRCA	TCGA-D8-A1JG	ZNF534	SNP	Nonsense_Mutation	19	52941953	G	T	45	51
BRCA	TCGA-D8-A1JG	SLC27A5	SNP	Silent	19	59009984	G	T	37	58
BRCA	TCGA-D8-A1JG	PRPF40A	SNP	Nonsense_Mutation	2	153525674	G	A	38	83
BRCA	TCGA-D8-A1JG	SCN3A	SNP	Missense_Mutation	2	165969454	A	G	13	93
BRCA	TCGA-D8-A1JG	TTN	SNP	Missense_Mutation	2	179574368	C	T	31	100
BRCA	TCGA-D8-A1JG	CPS1	SNP	Missense_Mutation	2	211503908	C	A	17	96
BRCA	TCGA-D8-A1JG	WDR69	SNP	Missense_Mutation	2	228786260	G	A	42	95
BRCA	TCGA-D8-A1JG	BRE	SNP	Missense_Mutation	2	28117484	G	A	40	73
BRCA	TCGA-D8-A1JG	PLEKHH2	SNP	Splice_site	2	43937469	G	A	39	46
BRCA	TCGA-D8-A1JG	POLR1A	SNP	Missense_Mutation	2	86276027	A	C	13	77
BRCA	TCGA-D8-A1JG	TMEM131	SNP	Missense_Mutation	2	98412831	C	A	32	99
BRCA	TCGA-D8-A1JG	INPP4A	SNP	Splice_Site	2	99175925	G	C	33	87
BRCA	TCGA-D8-A1JG	NCOA6	SNP	Nonsense_Mutation	20	33364231	G	A	48	68
BRCA	TCGA-D8-A1JG	EDN3	SNP	Silent	20	57899430	C	T	18	44
BRCA	TCGA-D8-A1JG	MYT1	SNP	Silent	20	62871696	C	T	31	48
BRCA	TCGA-D8-A1JG	GNG5P2	SNP	Silent	23	109590108	C	T	31	77
BRCA	TCGA-D8-A1JG	KLHL13	SNP	Missense_Mutation	23	117053569	T	C	58	76
BRCA	TCGA-D8-A1JG	SLITRK2	SNP	Silent	23	144905707	C	T	23	53
BRCA	TCGA-D8-A1JG	CNKSR2	SNP	Silent	23	21450849	C	T	21	49
BRCA	TCGA-D8-A1JG	CDK16	SNP	Splice_site	23	47088130	G	T	42	79
BRCA	TCGA-D8-A1JG	SHROOM4	SNP	Silent	23	50350572	G	A	44	54
BRCA	TCGA-D8-A1JG	BTLA	SNP	Silent	3	112185099	A	C	1	55
BRCA	TCGA-D8-A1JG	GATA2	SNP	Missense_Mutation	3	128205206	G	C	35	93
BRCA	TCGA-D8-A1JG	PIK3CA	INS	Frame_Shift_Ins	3	178928086	-	G	63	90
BRCA	TCGA-D8-A1JG	C3orf77	SNP	Missense_Mutation	3	44285298	C	T	26	46
BRCA	TCGA-D8-A1JG	CAMKV	SNP	Missense_Mutation	3	49898960	G	A	37	99
BRCA	TCGA-D8-A1JG	WDR1	SNP	Missense_Mutation	4	10079036	C	G	19	84
BRCA	TCGA-D8-A1JG	AP1AR	SNP	Missense_Mutation	4	113189561	G	A	37	73
BRCA	TCGA-D8-A1JG	NDST3	SNP	Silent	4	119161726	C	T	19	44
BRCA	TCGA-D8-A1JG	MYOZ2	SNP	Silent	4	120072076	C	A	29	74
BRCA	TCGA-D8-A1JG	MND1	SNP	Missense_Mutation	4	154315444	C	G	24	60
BRCA	TCGA-D8-A1JG	ASB5	SNP	Missense_Mutation	4	177142658	C	A	25	93
BRCA	TCGA-D8-A1JG	N4BP2	SNP	Missense_Mutation	4	40121887	C	A	32	53
BRCA	TCGA-D8-A1JG	ENAM	SNP	Missense_Mutation	4	71500234	G	T	34	52
BRCA	TCGA-D8-A1JG	IBSP	SNP	Missense_Mutation	4	88723554	C	T	26	67
BRCA	TCGA-D8-A1JG	LOX	SNP	Nonsense_Mutation	5	121411136	G	A	39	58
BRCA	TCGA-D8-A1JG	TRIO	SNP	Silent	5	14363873	G	A	34	58
BRCA	TCGA-D8-A1JG	LSM11	SNP	Missense_Mutation	5	157182067	C	G	30	86
BRCA	TCGA-D8-A1JG	DOCK2	SNP	Silent	5	169494675	C	T	31	44
BRCA	TCGA-D8-A1JG	SH3PXD2B	SNP	Silent	5	171766090	G	C	47	52
BRCA	TCGA-D8-A1JG	C5orf42	SNP	Missense_Mutation	5	37169272	T	G	52	59
BRCA	TCGA-D8-A1JG	CMYA5	SNP	Missense_Mutation	5	79030169	T	G	64	50
BRCA	TCGA-D8-A1JG	SPZ1	SNP	Nonsense_Mutation	5	79616317	G	T	33	64
BRCA	TCGA-D8-A1JG	NEDD9	SNP	Missense_Mutation	6	11191022	G	C	36	49
BRCA	TCGA-D8-A1JG	ROS1	SNP	Nonsense_Mutation	6	117658501	C	T	30	75
BRCA	TCGA-D8-A1JG	NUP43	SNP	Silent	6	150067641	G	A	39	44
BRCA	TCGA-D8-A1JG	DLL1	SNP	Missense_Mutation	6	170592574	C	T	19	100
BRCA	TCGA-D8-A1JG	POM121L2	SNP	Missense_Mutation	6	27278901	G	A	36	59
BRCA	TCGA-D8-A1JG	ZSCAN12	SNP	Missense_Mutation	6	28365909	C	T	30	60
BRCA	TCGA-D8-A1JG	TFAP2D	SNP	Missense_Mutation	6	50740543	C	T	26	72
BRCA	TCGA-D8-A1JG	COL12A1	SNP	Silent	6	75866154	G	A	37	35
BRCA	TCGA-D8-A1JG	OR2A12	SNP	Missense_Mutation	7	143792630	G	A	42	51
BRCA	TCGA-D8-A1JG	ABCB5	SNP	Missense_Mutation	7	20778650	C	T	19	94
BRCA	TCGA-D8-A1JG	IKZF1	SNP	Missense_Mutation	7	50455095	C	A	28	69
BRCA	TCGA-D8-A1JG	TEX15	SNP	Nonsense_Mutation	8	30705357	C	A	32	53
BRCA	TCGA-D8-A1JG	SDR16C5	SNP	Silent	8	57228667	T	G	51	30
BRCA	TCGA-D8-A1JG	TRPA1	SNP	Missense_Mutation	8	72967727	C	A	32	48
BRCA	TCGA-D8-A1JG	MATN2	SNP	Missense_Mutation	8	99028810	C	T	31	51
BRCA	TCGA-D8-A1JG	ACTL7B	SNP	Missense_Mutation	9	111617531	C	G	18	93
BRCA	TCGA-D8-A1JG	ADAMTSL1	SNP	Silent	9	18684727	C	T	31	48
BRCA	TCGA-D8-A1JG	PIP5K1B	SNP	Silent	9	71532631	T	C	58	41
BRCA	TCGA-D8-A1JH	DCAF6	SNP	Missense_Mutation	1	167935897	G	A	33	97
BRCA	TCGA-D8-A1JH	CPT2	SNP	Missense_Mutation	1	53675969	A	G	4	77
BRCA	TCGA-D8-A1JH	SUPT16H	SNP	Missense_Mutation	14	21836478	T	C	49	91
BRCA	TCGA-D8-A1JH	CCT6B	SNP	Missense_Mutation	17	33281599	A	G	16	84
BRCA	TCGA-D8-A1JH	RTTN	SNP	Missense_Mutation	18	67684697	T	A	49	70
BRCA	TCGA-D8-A1JH	IRGC	SNP	Missense_Mutation	19	44223848	G	A	38	54
BRCA	TCGA-D8-A1JH	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	TCGA-D8-A1JH	CASP8	SNP	Missense_Mutation	2	202123066	G	T	41	55
BRCA	TCGA-D8-A1JH	RBM39	SNP	Missense_Mutation	20	34313042	T	A	50	91
BRCA	TCGA-D8-A1JH	RASD2	SNP	Silent	22	35943099	C	T	23	31
BRCA	TCGA-D8-A1JH	ATF4	SNP	Silent	22	39917837	T	C	56	61
BRCA	TCGA-D8-A1JH	CD99	SNP	Missense_Mutation	23	2641396	G	A	35	55
BRCA	TCGA-D8-A1JH	KDM6A	INS	Frame_Shift_Ins	23	44922686	-	A	25	64
BRCA	TCGA-D8-A1JH	SLC35A2	SNP	Missense_Mutation	23	48761977	C	A	24	66
BRCA	TCGA-D8-A1JH	AKAP4	SNP	Silent	23	49958929	G	A	38	37
BRCA	TCGA-D8-A1JH	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-D8-A1JH	MAP3K1	SNP	Missense_Mutation	5	56184105	G	C	48	94
BRCA	TCGA-D8-A1JH	MED23	SNP	Missense_Mutation	6	131925356	T	C	49	92
BRCA	TCGA-D8-A1JH	DGKB	SNP	Missense_Mutation	7	14880851	G	A	37	83
BRCA	TCGA-D8-A1JI	CCDC19	SNP	Missense_Mutation	1	159858227	C	A	31	72
BRCA	TCGA-D8-A1JI	C1orf112	SNP	Missense_Mutation	1	169770068	C	A	21	60
BRCA	TCGA-D8-A1JI	ARID1A	DEL	Frame_Shift_Del	1	27087886	CCACCTC	-	26	97
BRCA	TCGA-D8-A1JI	ARID1A	DEL	In_Frame_Del	1	27087894	GCCACC	-	42	54
BRCA	TCGA-D8-A1JI	OSBPL9	SNP	Missense_Mutation	1	52222005	C	T	27	66
BRCA	TCGA-D8-A1JI	DMRTB1	SNP	Silent	1	53927225	G	A	40	37
BRCA	TCGA-D8-A1JI	PTEN	INS	Frame_Shift_Ins	10	89624272	-	A	49	86
BRCA	TCGA-D8-A1JI	TECTA	SNP	Missense_Mutation	11	120996488	G	A	47	81
BRCA	TCGA-D8-A1JI	IRF7	SNP	Missense_Mutation	11	615281	G	A	33	44
BRCA	TCGA-D8-A1JI	KLC2	SNP	Silent	11	66033219	C	T	26	50
BRCA	TCGA-D8-A1JI	RAB1B	SNP	Missense_Mutation	11	66039643	G	A	33	90
BRCA	TCGA-D8-A1JI	PPFIA1	SNP	Missense_Mutation	11	70224272	C	T	32	98
BRCA	TCGA-D8-A1JI	SCN8A	SNP	Missense_Mutation	12	52188168	G	A	41	100
BRCA	TCGA-D8-A1JI	PTPRB	SNP	Silent	12	70928673	C	A	25	52
BRCA	TCGA-D8-A1JI	SPATA13	SNP	Missense_Mutation	13	24860370	G	T	40	66
BRCA	TCGA-D8-A1JI	DICER1	SNP	Missense_Mutation	14	95562728	C	T	25	99
BRCA	TCGA-D8-A1JI	VPS13C	SNP	Missense_Mutation	15	62283988	C	T	22	96
BRCA	TCGA-D8-A1JI	FURIN	SNP	Silent	15	91422703	G	A	39	34
BRCA	TCGA-D8-A1JI	PKD1	SNP	Missense_Mutation	16	2143858	C	A	28	80
BRCA	TCGA-D8-A1JI	TRAF7	SNP	Splice_Site	16	2225153	T	C	59	88
BRCA	TCGA-D8-A1JI	CDK3	SNP	Silent	17	73998015	G	A	34	54
BRCA	TCGA-D8-A1JI	ZNF236	SNP	Nonsense_Mutation	18	74625749	C	T	25	100
BRCA	TCGA-D8-A1JI	NEB	SNP	Splice_site	2	152483718	T	C	60	66
BRCA	TCGA-D8-A1JI	WFDC2	SNP	Silent	20	44108628	C	T	31	28
BRCA	TCGA-D8-A1JI	LONRF3	SNP	Missense_Mutation	23	118140133	A	G	1	74
BRCA	TCGA-D8-A1JI	SLC25A43	SNP	Missense_Mutation	23	118586830	A	C	15	52
BRCA	TCGA-D8-A1JI	FAM122B	SNP	Silent	23	133923130	A	G	8	59
BRCA	TCGA-D8-A1JI	MAGED1	SNP	Missense_Mutation	23	51638615	A	T	10	66
BRCA	TCGA-D8-A1JI	HEG1	SNP	Missense_Mutation	3	124739694	T	G	60	52
BRCA	TCGA-D8-A1JI	EXOSC7	SNP	Splice_site	3	45030632	G	A	41	100
BRCA	TCGA-D8-A1JI	CWC27	SNP	Silent	5	64081367	C	T	19	39
BRCA	TCGA-D8-A1JI	SLC17A2	INS	Frame_Shift_Ins	6	25921519	-	T	8	80
BRCA	TCGA-D8-A1JI	CCDC136	SNP	Silent	7	128455958	C	T	18	58
BRCA	TCGA-D8-A1JI	FAM188B	SNP	Silent	7	30876302	A	G	3	51
BRCA	TCGA-D8-A1JI	CNTNAP3B	SNP	Missense_Mutation	9	43876040	C	A	30	61
BRCA	TCGA-D8-A1JJ	PRAMEF10	SNP	Silent	1	12954760	T	G	56	48
BRCA	TCGA-D8-A1JJ	SELE	SNP	Silent	1	169698645	C	T	32	61
BRCA	TCGA-D8-A1JJ	SMYD2	SNP	Missense_Mutation	1	214498008	G	A	45	96
BRCA	TCGA-D8-A1JJ	C1orf63	SNP	Silent	1	25572975	C	T	31	33
BRCA	TCGA-D8-A1JJ	MACF1	SNP	Missense_Mutation	1	39895660	G	A	41	55
BRCA	TCGA-D8-A1JJ	RLF	SNP	Silent	1	40697288	G	A	38	52
BRCA	TCGA-D8-A1JJ	CTPS1	SNP	Missense_Mutation	1	41473185	G	A	33	93
BRCA	TCGA-D8-A1JJ	JUN	SNP	Missense_Mutation	1	59248409	C	T	31	96
BRCA	TCGA-D8-A1JJ	CNNM1	SNP	Missense_Mutation	10	101090540	G	T	36	98
BRCA	TCGA-D8-A1JJ	APBB1IP	SNP	Missense_Mutation	10	26830613	G	A	48	89
BRCA	TCGA-D8-A1JJ	GATA3	SNP	Missense_Mutation	10	8106058	T	G	51	92
BRCA	TCGA-D8-A1JJ	TSPAN14	SNP	Silent	10	82249013	C	T	19	39
BRCA	TCGA-D8-A1JJ	C11orf57	SNP	Silent	11	111953459	C	G	29	54
BRCA	TCGA-D8-A1JJ	HBG2	SNP	Silent	11	5275627	A	C	3	45
BRCA	TCGA-D8-A1JJ	MS4A4A	SNP	Missense_Mutation	11	60064763	G	A	40	49
BRCA	TCGA-D8-A1JJ	DCTN2	SNP	Missense_Mutation	12	57929272	C	T	29	95
BRCA	TCGA-D8-A1JJ	ARHGEF7	SNP	Silent	13	111806290	C	T	25	55
BRCA	TCGA-D8-A1JJ	FNDC3A	SNP	Silent	13	49781423	G	A	41	82
BRCA	TCGA-D8-A1JJ	TMED8	SNP	Missense_Mutation	14	77818056	C	A	26	55
BRCA	TCGA-D8-A1JJ	HERC2	SNP	Missense_Mutation	15	28515846	G	A	45	99
BRCA	TCGA-D8-A1JJ	C15orf60	SNP	Missense_Mutation	15	73852248	G	C	45	59
BRCA	TCGA-D8-A1JJ	MYH11	SNP	Missense_Mutation	16	15841442	C	T	26	99
BRCA	TCGA-D8-A1JJ	GLG1	SNP	Missense_Mutation	16	74505129	T	C	60	94
BRCA	TCGA-D8-A1JJ	NCOR1	SNP	Missense_Mutation	17	15935743	G	A	47	100
BRCA	TCGA-D8-A1JJ	RPS6KB1	SNP	Missense_Mutation	17	58013897	C	A	32	70
BRCA	TCGA-D8-A1JJ	TP53	SNP	Missense_Mutation	17	7578508	C	T	25	82
BRCA	TCGA-D8-A1JJ	AFMID	SNP	Missense_Mutation	17	76201787	G	A	37	89
BRCA	TCGA-D8-A1JJ	PHLPP1	SNP	Missense_Mutation	18	60646275	G	A	33	96
BRCA	TCGA-D8-A1JJ	MYO9B	SNP	Silent	19	17314024	C	T	26	51
BRCA	TCGA-D8-A1JJ	IZUMO4	SNP	Missense_Mutation	19	2097595	C	A	18	41
BRCA	TCGA-D8-A1JJ	BCAT2	SNP	Nonsense_Mutation	19	49299687	G	A	47	90
BRCA	TCGA-D8-A1JJ	ZNF677	SNP	Missense_Mutation	19	53741204	C	G	32	70
BRCA	TCGA-D8-A1JJ	KIR2DL4	SNP	Missense_Mutation	19	55324735	G	A	35	47
BRCA	TCGA-D8-A1JJ	LRP2	SNP	Missense_Mutation	2	170081851	T	C	49	80
BRCA	TCGA-D8-A1JJ	SMARCAL1	SNP	Missense_Mutation	2	217285189	G	A	37	87
BRCA	TCGA-D8-A1JJ	COL4A4	SNP	Missense_Mutation	2	227924262	C	T	23	74
BRCA	TCGA-D8-A1JJ	EHBP1	SNP	Missense_Mutation	2	63217952	G	A	45	85
BRCA	TCGA-D8-A1JJ	GPAT2	SNP	Silent	2	96689146	A	G	4	51
BRCA	TCGA-D8-A1JJ	XRN2	SNP	Missense_Mutation	20	21314591	C	T	23	98
BRCA	TCGA-D8-A1JJ	CRYZL1	SNP	Missense_Mutation	21	34963501	T	A	50	79
BRCA	TCGA-D8-A1JJ	SLC5A3	SNP	Missense_Mutation	21	35467531	A	G	8	64
BRCA	TCGA-D8-A1JJ	ZBED4	SNP	Silent	22	50278870	G	A	47	65
BRCA	TCGA-D8-A1JJ	DOCK11	SNP	Missense_Mutation	23	117815153	C	T	32	59
BRCA	TCGA-D8-A1JJ	CXorf64	SNP	Missense_Mutation	23	125955390	C	T	30	58
BRCA	TCGA-D8-A1JJ	HTATSF1	SNP	Missense_Mutation	23	135582352	G	A	48	79
BRCA	TCGA-D8-A1JJ	SLITRK4	SNP	Missense_Mutation	23	142718155	T	C	60	75
BRCA	TCGA-D8-A1JJ	REPS2	SNP	Missense_Mutation	23	17024441	C	T	23	93
BRCA	TCGA-D8-A1JJ	FAM123B	SNP	Silent	23	63410674	A	G	8	45
BRCA	TCGA-D8-A1JJ	HEPH	SNP	Silent	23	65417628	C	T	29	41
BRCA	TCGA-D8-A1JJ	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-D8-A1JJ	DLG1	SNP	Missense_Mutation	3	196817851	C	T	29	99
BRCA	TCGA-D8-A1JJ	SNRK	SNP	Missense_Mutation	3	43388879	C	G	18	57
BRCA	TCGA-D8-A1JJ	LZTFL1	SNP	Splice_Site	3	45879417	A	C	14	88
BRCA	TCGA-D8-A1JJ	PCDHA2	SNP	Silent	5	140175977	G	A	39	39
BRCA	TCGA-D8-A1JJ	PCDHB13	SNP	Missense_Mutation	5	140594357	C	T	23	79
BRCA	TCGA-D8-A1JJ	ZFR	SNP	Silent	5	32403302	C	T	19	46
BRCA	TCGA-D8-A1JJ	OSMR	SNP	Silent	5	38924582	G	A	45	63
BRCA	TCGA-D8-A1JJ	CCL28	SNP	Missense_Mutation	5	43382081	C	T	28	52
BRCA	TCGA-D8-A1JJ	SCAF8	SNP	Missense_Mutation	6	155143458	C	G	17	74
BRCA	TCGA-D8-A1JJ	EZR	SNP	Silent	6	159188099	G	A	38	42
BRCA	TCGA-D8-A1JJ	ZBTB12	SNP	Missense_Mutation	6	31867836	C	T	27	70
BRCA	TCGA-D8-A1JJ	SRF	SNP	Silent	6	43141677	G	C	46	56
BRCA	TCGA-D8-A1JJ	ZNF425	SNP	Silent	7	148800755	C	T	27	9
BRCA	TCGA-D8-A1JJ	GTPBP10	SNP	Missense_Mutation	7	89982152	T	C	53	91
BRCA	TCGA-D8-A1JJ	ATAD2	SNP	Missense_Mutation	8	124371840	C	G	29	99
BRCA	TCGA-D8-A1JJ	KIAA1456	SNP	Missense_Mutation	8	12863718	C	T	29	60
BRCA	TCGA-D8-A1JJ	NPBWR1	SNP	Missense_Mutation	8	53853440	C	T	23	61
BRCA	TCGA-D8-A1JJ	ZFHX4	SNP	Missense_Mutation	8	77767078	G	A	37	100
BRCA	TCGA-D8-A1JJ	CCNE2	SNP	Missense_Mutation	8	95905064	G	A	45	94
BRCA	TCGA-D8-A1JJ	ADAMTSL1	SNP	Missense_Mutation	9	18887969	C	G	29	73
BRCA	TCGA-D8-A1JJ	FOCAD	SNP	Missense_Mutation	9	20982406	G	C	45	91
BRCA	TCGA-D8-A1JK	KIF1B	SNP	Silent	1	10332316	T	C	49	55
BRCA	TCGA-D8-A1JK	CA14	SNP	Missense_Mutation	1	150234993	C	A	24	67
BRCA	TCGA-D8-A1JK	FLG	SNP	Missense_Mutation	1	152286937	T	A	56	46
BRCA	TCGA-D8-A1JK	YY1AP1	SNP	Missense_Mutation	1	155649273	C	T	30	75
BRCA	TCGA-D8-A1JK	NOS1AP	SNP	Missense_Mutation	1	162270466	A	T	3	72
BRCA	TCGA-D8-A1JK	POU2F1	SNP	Missense_Mutation	1	167382300	G	A	39	49
BRCA	TCGA-D8-A1JK	MDM4	DEL	Frame_Shift_Del	1	204495552	CT	-	20	93
BRCA	TCGA-D8-A1JK	TMEM81	SNP	Missense_Mutation	1	205053330	C	T	22	67
BRCA	TCGA-D8-A1JK	NVL	SNP	Missense_Mutation	1	224420957	A	C	9	62
BRCA	TCGA-D8-A1JK	DNAH14	SNP	Silent	1	225488627	G	A	48	53
BRCA	TCGA-D8-A1JK	FMN2	SNP	Silent	1	240370995	G	A	43	22
BRCA	TCGA-D8-A1JK	OR2T8	SNP	Missense_Mutation	1	248084570	T	C	63	65
BRCA	TCGA-D8-A1JK	CEP85	SNP	Missense_Mutation	1	26595997	C	G	20	52
BRCA	TCGA-D8-A1JK	ZMYM4	SNP	Splice_Site	1	35851042	G	A	33	84
BRCA	TCGA-D8-A1JK	KIAA0494	SNP	Silent	1	47149000	G	A	33	58
BRCA	TCGA-D8-A1JK	HEATR8	SNP	Silent	1	55175824	G	A	35	54
BRCA	TCGA-D8-A1JK	CHD5	SNP	Missense_Mutation	1	6169975	G	A	47	98
BRCA	TCGA-D8-A1JK	LRRC8C	SNP	Missense_Mutation	1	90178422	G	A	42	100
BRCA	TCGA-D8-A1JK	CUBN	SNP	Missense_Mutation	10	16979758	G	A	42	73
BRCA	TCGA-D8-A1JK	THNSL1	SNP	Missense_Mutation	10	25313411	T	G	49	90
BRCA	TCGA-D8-A1JK	ITGB1	SNP	Silent	10	33218841	T	C	61	40
BRCA	TCGA-D8-A1JK	FZD8	SNP	Missense_Mutation	10	35930097	G	C	41	81
BRCA	TCGA-D8-A1JK	GRIA4	SNP	Missense_Mutation	11	105804480	G	T	41	100
BRCA	TCGA-D8-A1JK	MARK2	DEL	Frame_Shift_Del	11	63670121	AG	-	7	78
BRCA	TCGA-D8-A1JK	CDC42EP2	SNP	Missense_Mutation	11	65088527	G	C	42	80
BRCA	TCGA-D8-A1JK	SUV420H1	SNP	Splice_site	11	67947667	G	A	38	64
BRCA	TCGA-D8-A1JK	C2CD3	SNP	Nonsense_Mutation	11	73849780	T	A	63	76
BRCA	TCGA-D8-A1JK	CLNS1A	DEL	Frame_Shift_Del	11	77333553	TC	-	50	75
BRCA	TCGA-D8-A1JK	TAS2R8	SNP	Silent	12	10959166	A	G	5	44
BRCA	TCGA-D8-A1JK	TAS2R14	SNP	Missense_Mutation	12	11091413	C	T	18	42
BRCA	TCGA-D8-A1JK	TCTN1	SNP	Splice_site	12	111085556	C	A	21	53
BRCA	TCGA-D8-A1JK	TRAFD1	SNP	Missense_Mutation	12	112589696	T	A	49	50
BRCA	TCGA-D8-A1JK	TBX3	DEL	Frame_Shift_Del	12	115120844	GAGCGCCGCCGCGCCGTTGGGAG	-	33	52
BRCA	TCGA-D8-A1JK	CLIP1	DEL	Frame_Shift_Del	12	122794401	TC	-	62	80
BRCA	TCGA-D8-A1JK	HCAR3	SNP	Missense_Mutation	12	123201043	G	C	39	75
BRCA	TCGA-D8-A1JK	PDE3A	SNP	Missense_Mutation	12	20806958	G	T	35	83
BRCA	TCGA-D8-A1JK	CSAD	SNP	Missense_Mutation	12	53567239	C	A	28	53
BRCA	TCGA-D8-A1JK	BAZ2A	SNP	Missense_Mutation	12	57007800	G	T	45	79
BRCA	TCGA-D8-A1JK	C3AR1	SNP	Missense_Mutation	12	8211623	G	C	33	56
BRCA	TCGA-D8-A1JK	A2M	SNP	Nonsense_Mutation	12	9221429	G	A	45	51
BRCA	TCGA-D8-A1JK	KLRB1	DEL	Frame_Shift_Del	12	9750720	AG	-	7	37
BRCA	TCGA-D8-A1JK	RNF17	SNP	Missense_Mutation	13	25399899	C	G	25	77
BRCA	TCGA-D8-A1JK	DYNC1H1	SNP	Missense_Mutation	14	102467495	T	C	59	92
BRCA	TCGA-D8-A1JK	PCK2	SNP	Missense_Mutation	14	24571997	T	C	52	86
BRCA	TCGA-D8-A1JK	REC8	SNP	Missense_Mutation	14	24648865	G	A	44	49
BRCA	TCGA-D8-A1JK	NPAS3	SNP	Missense_Mutation	14	34269012	G	A	39	82
BRCA	TCGA-D8-A1JK	SRP54	SNP	Missense_Mutation	14	35488263	A	C	12	89
BRCA	TCGA-D8-A1JK	DAAM1	SNP	Missense_Mutation	14	59789814	G	C	33	64
BRCA	TCGA-D8-A1JK	MPP5	SNP	Missense_Mutation	14	67784190	A	C	1	90
BRCA	TCGA-D8-A1JK	VRK1	DEL	Frame_Shift_Del	14	97322913	AAAC	-	1	66
BRCA	TCGA-D8-A1JK	RYR3	SNP	Missense_Mutation	15	33872205	A	C	6	42
BRCA	TCGA-D8-A1JK	EIF2AK4	SNP	Nonsense_Mutation	15	40246168	A	T	9	76
BRCA	TCGA-D8-A1JK	C15orf44	SNP	Silent	15	65871806	A	G	8	44
BRCA	TCGA-D8-A1JK	DENND4A	SNP	Splice_Site	15	66022017	C	T	20	100
BRCA	TCGA-D8-A1JK	SYNM	SNP	Silent	15	99673182	G	A	44	59
BRCA	TCGA-D8-A1JK	ABCC1	SNP	Silent	16	16208804	C	A	30	52
BRCA	TCGA-D8-A1JK	HS3ST2	SNP	Nonsense_Mutation	16	22926863	C	T	25	97
BRCA	TCGA-D8-A1JK	BRD7	SNP	Silent	16	50353829	G	T	45	49
BRCA	TCGA-D8-A1JK	GPR114	SNP	Missense_Mutation	16	57596304	G	A	41	33
BRCA	TCGA-D8-A1JK	DYNC1LI2	SNP	Missense_Mutation	16	66783211	C	G	32	98
BRCA	TCGA-D8-A1JK	SLC7A5	SNP	Missense_Mutation	16	87874747	G	C	33	75
BRCA	TCGA-D8-A1JK	MYH4	SNP	Silent	17	10358115	G	A	33	60
BRCA	TCGA-D8-A1JK	NCOR1	SNP	Missense_Mutation	17	16012203	C	A	28	50
BRCA	TCGA-D8-A1JK	SYNRG	SNP	Missense_Mutation	17	35946532	C	A	28	73
BRCA	TCGA-D8-A1JK	STAT3	SNP	Missense_Mutation	17	40481654	A	T	1	93
BRCA	TCGA-D8-A1JK	ACBD4	SNP	Missense_Mutation	17	43220876	T	C	56	48
BRCA	TCGA-D8-A1JK	FAM57A	SNP	Silent	17	641191	T	A	59	43
BRCA	TCGA-D8-A1JK	TSEN54	SNP	Silent	17	73519828	T	G	55	49
BRCA	TCGA-D8-A1JK	TP53	SNP	Splice_Site	17	7576852	C	T	18	72
BRCA	TCGA-D8-A1JK	RNF213	SNP	Missense_Mutation	17	78311392	T	C	54	77
BRCA	TCGA-D8-A1JK	ROCK1	SNP	Silent	18	18572891	A	G	13	61
BRCA	TCGA-D8-A1JK	CABYR	SNP	Nonsense_Mutation	18	21739933	G	T	35	68
BRCA	TCGA-D8-A1JK	LPIN2	SNP	Missense_Mutation	18	2934386	G	T	33	67
BRCA	TCGA-D8-A1JK	ASXL3	SNP	Silent	18	31326469	C	T	21	86
BRCA	TCGA-D8-A1JK	DLGAP1	SNP	Missense_Mutation	18	3582137	C	A	24	76
BRCA	TCGA-D8-A1JK	LAMA1	DEL	In_Frame_Del	18	7011398	GTA	-	44	52
BRCA	TCGA-D8-A1JK	ATP9B	SNP	Missense_Mutation	18	76974004	G	A	37	91
BRCA	TCGA-D8-A1JK	SOGA2	SNP	Silent	18	8796352	C	A	30	49
BRCA	TCGA-D8-A1JK	RGL3	SNP	Silent	19	11527722	G	A	47	36
BRCA	TCGA-D8-A1JK	ZNF433	SNP	Missense_Mutation	19	12125835	T	A	64	60
BRCA	TCGA-D8-A1JK	KLC3	SNP	Missense_Mutation	19	45851256	G	A	38	90
BRCA	TCGA-D8-A1JK	ZNF587	SNP	Missense_Mutation	19	58371291	G	T	34	48
BRCA	TCGA-D8-A1JK	ZRANB3	SNP	Missense_Mutation	2	135988317	C	T	29	63
BRCA	TCGA-D8-A1JK	CSRNP3	SNP	Missense_Mutation	2	166451648	G	C	33	100
BRCA	TCGA-D8-A1JK	LRP2	SNP	Missense_Mutation	2	170127501	C	T	23	100
BRCA	TCGA-D8-A1JK	TTN	SNP	Missense_Mutation	2	179456033	T	C	60	72
BRCA	TCGA-D8-A1JK	PIKFYVE	SNP	Missense_Mutation	2	209136299	G	A	37	53
BRCA	TCGA-D8-A1JK	APOB	SNP	Silent	2	21231856	T	C	55	41
BRCA	TCGA-D8-A1JK	DOCK10	SNP	Missense_Mutation	2	225698925	T	G	64	72
BRCA	TCGA-D8-A1JK	INPP5D	SNP	Missense_Mutation	2	234079743	G	A	40	95
BRCA	TCGA-D8-A1JK	ANO7	SNP	Missense_Mutation	2	242141634	C	G	23	54
BRCA	TCGA-D8-A1JK	TTC7A	SNP	Silent	2	47233105	G	A	35	50
BRCA	TCGA-D8-A1JK	KIAA1841	SNP	Missense_Mutation	2	61361346	G	T	45	48
BRCA	TCGA-D8-A1JK	MXD1	SNP	Silent	2	70164405	C	A	31	50
BRCA	TCGA-D8-A1JK	CTNNA2	SNP	Missense_Mutation	2	80773099	T	C	58	93
BRCA	TCGA-D8-A1JK	NCAPH	SNP	Missense_Mutation	2	97019092	C	G	26	69
BRCA	TCGA-D8-A1JK	CD93	SNP	Nonsense_Mutation	20	23065764	G	A	47	96
BRCA	TCGA-D8-A1JK	GSS	SNP	Missense_Mutation	20	33517366	A	G	14	51
BRCA	TCGA-D8-A1JK	ZNF217	SNP	Nonsense_Mutation	20	52193275	G	T	48	53
BRCA	TCGA-D8-A1JK	POTED	DEL	In_Frame_Del	21	15013685	AAG	-	1	50
BRCA	TCGA-D8-A1JK	ADAMTS5	SNP	Missense_Mutation	21	28306826	G	T	46	84
BRCA	TCGA-D8-A1JK	FAM176C	SNP	Missense_Mutation	21	33887394	C	T	25	76
BRCA	TCGA-D8-A1JK	BRWD1	SNP	Missense_Mutation	21	40665795	C	A	32	85
BRCA	TCGA-D8-A1JK	TEX33	SNP	Missense_Mutation	22	37387573	T	C	62	60
BRCA	TCGA-D8-A1JK	PASD1	SNP	Missense_Mutation	23	150789492	C	A	20	39
BRCA	TCGA-D8-A1JK	GABRQ	SNP	Silent	23	151821057	G	A	38	34
BRCA	TCGA-D8-A1JK	G6PD	SNP	Nonsense_Mutation	23	153760236	C	T	22	93
BRCA	TCGA-D8-A1JK	NHS	SNP	Missense_Mutation	23	17750232	C	T	32	96
BRCA	TCGA-D8-A1JK	ELK1	SNP	Silent	23	47500826	C	T	29	54
BRCA	TCGA-D8-A1JK	ZNF182	SNP	Silent	23	47837015	G	A	39	51
BRCA	TCGA-D8-A1JK	ZBTB11	SNP	Silent	3	101370304	G	A	44	65
BRCA	TCGA-D8-A1JK	ALCAM	DEL	Frame_Shift_Del	3	105266099	AAAG	-	1	69
BRCA	TCGA-D8-A1JK	MYH15	SNP	Silent	3	108159994	C	T	32	66
BRCA	TCGA-D8-A1JK	WDR52	SNP	Missense_Mutation	3	113138991	T	G	60	82
BRCA	TCGA-D8-A1JK	SLC12A8	SNP	Missense_Mutation	3	124826747	T	C	59	55
BRCA	TCGA-D8-A1JK	KLF15	SNP	Silent	3	126071324	G	A	33	69
BRCA	TCGA-D8-A1JK	DNAJC13	SNP	Missense_Mutation	3	132245123	C	A	17	98
BRCA	TCGA-D8-A1JK	TRIM42	SNP	Missense_Mutation	3	140397328	T	C	54	56
BRCA	TCGA-D8-A1JK	C3orf19	SNP	Missense_Mutation	3	14708374	G	C	38	92
BRCA	TCGA-D8-A1JK	IFT80	SNP	Silent	3	159995153	A	C	9	49
BRCA	TCGA-D8-A1JK	SI	SNP	Silent	3	164735432	A	G	4	50
BRCA	TCGA-D8-A1JK	ZBBX	SNP	Missense_Mutation	3	167086345	C	T	31	50
BRCA	TCGA-D8-A1JK	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A1JK	VPS8	SNP	Silent	3	184714278	A	T	13	52
BRCA	TCGA-D8-A1JK	C3orf70	SNP	Missense_Mutation	3	184801224	A	T	5	45
BRCA	TCGA-D8-A1JK	IL1RAP	SNP	Nonsense_Mutation	3	190362053	C	A	17	65
BRCA	TCGA-D8-A1JK	PIGZ	SNP	Missense_Mutation	3	196675068	C	T	25	82
BRCA	TCGA-D8-A1JK	RARB	DEL	Frame_Shift_Del	3	25637900	CTTTTGAAAAGGTGCAGAGCGTGTAATTA	-	32	50
BRCA	TCGA-D8-A1JK	CYP8B1	SNP	Missense_Mutation	3	42916128	G	A	35	98
BRCA	TCGA-D8-A1JK	C3orf77	SNP	Missense_Mutation	3	44373333	G	A	33	57
BRCA	TCGA-D8-A1JK	UQCRC1	SNP	Missense_Mutation	3	48637563	T	C	58	77
BRCA	TCGA-D8-A1JK	CENPE	SNP	Missense_Mutation	4	104079590	C	T	31	59
BRCA	TCGA-D8-A1JK	KIAA1109	SNP	Missense_Mutation	4	123193324	G	A	34	83
BRCA	TCGA-D8-A1JK	FAT4	SNP	Missense_Mutation	4	126384757	A	C	2	70
BRCA	TCGA-D8-A1JK	SLC10A7	SNP	Missense_Mutation	4	147431152	A	G	12	71
BRCA	TCGA-D8-A1JK	CHIC2	SNP	Missense_Mutation	4	54930430	T	G	58	84
BRCA	TCGA-D8-A1JK	AMBN	SNP	Missense_Mutation	4	71462727	G	T	34	54
BRCA	TCGA-D8-A1JK	APC	SNP	Missense_Mutation	5	112175102	T	A	64	91
BRCA	TCGA-D8-A1JK	NMUR2	SNP	Silent	5	151784140	G	A	35	52
BRCA	TCGA-D8-A1JK	KIF4B	SNP	Missense_Mutation	5	154394120	C	A	30	83
BRCA	TCGA-D8-A1JK	C7	SNP	Missense_Mutation	5	40972659	G	C	41	86
BRCA	TCGA-D8-A1JK	CCDC125	SNP	Silent	5	68616155	T	C	56	43
BRCA	TCGA-D8-A1JK	ASCC3	SNP	Missense_Mutation	6	101075523	A	T	3	92
BRCA	TCGA-D8-A1JK	ASCC3	SNP	Missense_Mutation	6	101075570	A	C	9	93
BRCA	TCGA-D8-A1JK	SYTL3	SNP	Missense_Mutation	6	159103965	A	G	1	62
BRCA	TCGA-D8-A1JK	FNDC1	SNP	Missense_Mutation	6	159660774	C	T	18	71
BRCA	TCGA-D8-A1JK	WRNIP1	SNP	Missense_Mutation	6	2769106	A	C	1	90
BRCA	TCGA-D8-A1JK	BRD2	DEL	In_Frame_Del	6	32945699	GAG	-	45	73
BRCA	TCGA-D8-A1JK	ITPR3	SNP	Missense_Mutation	6	33654276	G	C	41	75
BRCA	TCGA-D8-A1JK	MED20	SNP	Splice_Site	6	41877006	C	A	18	100
BRCA	TCGA-D8-A1JK	GPR115	SNP	Missense_Mutation	6	47686162	T	C	51	72
BRCA	TCGA-D8-A1JK	DST	SNP	Missense_Mutation	6	56471604	T	G	53	57
BRCA	TCGA-D8-A1JK	EYS	DEL	Frame_Shift_Del	6	66115227	AC	-	2	53
BRCA	TCGA-D8-A1JK	UFL1	SNP	Missense_Mutation	6	96999374	C	G	20	57
BRCA	TCGA-D8-A1JK	PLXNA4	SNP	Missense_Mutation	7	132192921	T	C	63	65
BRCA	TCGA-D8-A1JK	ADCK2	SNP	Silent	7	140373340	C	T	30	45
BRCA	TCGA-D8-A1JK	SEPT14	SNP	Missense_Mutation	7	55912240	C	T	18	88
BRCA	TCGA-D8-A1JK	KCNK9	SNP	Missense_Mutation	8	140715163	C	A	19	88
BRCA	TCGA-D8-A1JK	CSMD1	SNP	Nonsense_Mutation	8	3265702	G	T	45	100
BRCA	TCGA-D8-A1JK	ADAM9	SNP	Silent	8	38961171	T	A	62	62
BRCA	TCGA-D8-A1JK	RB1CC1	SNP	Silent	8	53548623	A	G	16	53
BRCA	TCGA-D8-A1JK	ARMC1	DEL	Frame_Shift_Del	8	66525619	TG	-	51	69
BRCA	TCGA-D8-A1JK	ZFHX4	SNP	Missense_Mutation	8	77761899	C	T	19	97
BRCA	TCGA-D8-A1JK	ZFHX4	SNP	Silent	8	77775820	C	T	32	55
BRCA	TCGA-D8-A1JK	EPB41L4B	SNP	Missense_Mutation	9	112018071	C	T	18	100
BRCA	TCGA-D8-A1JK	ZNF618	SNP	Missense_Mutation	9	116812343	G	C	39	97
BRCA	TCGA-D8-A1JK	TNC	SNP	Missense_Mutation	9	117836049	C	T	27	83
BRCA	TCGA-D8-A1JK	C5	SNP	Silent	9	123731362	G	A	48	55
BRCA	TCGA-D8-A1JK	MPDZ	SNP	Silent	9	13222406	G	A	45	58
BRCA	TCGA-D8-A1JK	PRRC2B	SNP	Missense_Mutation	9	134350103	G	A	45	76
BRCA	TCGA-D8-A1JK	RALGDS	SNP	Nonsense_Mutation	9	136031465	G	T	42	48
BRCA	TCGA-D8-A1JK	RFX3	SNP	Silent	9	3225066	T	C	55	43
BRCA	TCGA-D8-A1JK	KDM4C	SNP	Missense_Mutation	9	6986428	T	A	49	43
BRCA	TCGA-D8-A1JK	AGTPBP1	SNP	Splice_site	9	88272558	T	G	62	71
BRCA	TCGA-D8-A1JL	VCAM1	SNP	Silent	1	101190442	T	A	62	62
BRCA	TCGA-D8-A1JL	WNT2B	SNP	Missense_Mutation	1	113057692	G	A	40	99
BRCA	TCGA-D8-A1JL	MOV10	SNP	Missense_Mutation	1	113232573	G	A	42	54
BRCA	TCGA-D8-A1JL	FLG	SNP	Missense_Mutation	1	152279767	G	A	37	53
BRCA	TCGA-D8-A1JL	FHAD1	SNP	Missense_Mutation	1	15687065	A	C	11	72
BRCA	TCGA-D8-A1JL	AXDND1	SNP	Silent	1	179335674	G	T	38	46
BRCA	TCGA-D8-A1JL	UBR4	SNP	Silent	1	19494604	A	C	11	47
BRCA	TCGA-D8-A1JL	CFH	SNP	Missense_Mutation	1	196643014	C	A	20	52
BRCA	TCGA-D8-A1JL	LMOD1	SNP	Missense_Mutation	1	201868906	A	G	11	54
BRCA	TCGA-D8-A1JL	CR1	SNP	Silent	1	207697077	G	A	35	52
BRCA	TCGA-D8-A1JL	PARP1	SNP	Missense_Mutation	1	226579990	G	T	46	55
BRCA	TCGA-D8-A1JL	URB2	SNP	Missense_Mutation	1	229771028	G	A	42	54
BRCA	TCGA-D8-A1JL	CDC20	SNP	Missense_Mutation	1	43828729	C	G	22	73
BRCA	TCGA-D8-A1JL	KIAA0494	SNP	Splice_Site	1	47154023	A	C	14	76
BRCA	TCGA-D8-A1JL	LRRC7	SNP	Silent	1	70225882	C	T	24	74
BRCA	TCGA-D8-A1JL	C1orf173	SNP	Silent	1	75037347	C	A	23	27
BRCA	TCGA-D8-A1JL	ZNF644	SNP	Missense_Mutation	1	91383613	A	T	8	90
BRCA	TCGA-D8-A1JL	ABLIM1	SNP	Silent	10	116233707	C	T	30	65
BRCA	TCGA-D8-A1JL	KAT6B	SNP	Missense_Mutation	10	76735881	C	G	31	67
BRCA	TCGA-D8-A1JL	CDHR1	SNP	Silent	10	85970822	C	G	30	53
BRCA	TCGA-D8-A1JL	FAM25A	SNP	Silent	10	88784395	C	T	22	53
BRCA	TCGA-D8-A1JL	KLLN	DEL	In_Frame_Del	10	89621990	GCCTCCGGA	-	46	53
BRCA	TCGA-D8-A1JL	C11orf88	SNP	Silent	11	111385611	C	G	21	50
BRCA	TCGA-D8-A1JL	HYOU1	SNP	Missense_Mutation	11	118926221	T	C	58	88
BRCA	TCGA-D8-A1JL	OR6T1	SNP	Missense_Mutation	11	123813968	T	C	59	40
BRCA	TCGA-D8-A1JL	OR10G9	SNP	Missense_Mutation	11	123894114	C	A	18	54
BRCA	TCGA-D8-A1JL	SNX32	SNP	Missense_Mutation	11	65620233	G	A	37	81
BRCA	TCGA-D8-A1JL	FUT4	SNP	Silent	11	94278568	C	A	23	19
BRCA	TCGA-D8-A1JL	SLC17A8	SNP	Nonsense_Mutation	12	100796149	G	A	42	100
BRCA	TCGA-D8-A1JL	TAOK3	SNP	Missense_Mutation	12	118615098	G	T	46	100
BRCA	TCGA-D8-A1JL	KNTC1	SNP	Missense_Mutation	12	123107016	G	C	36	50
BRCA	TCGA-D8-A1JL	DNAH10	DEL	Frame_Shift_Del	12	124402297	GAACA	-	41	42
BRCA	TCGA-D8-A1JL	RIMBP2	SNP	Splice_Site	12	130941040	C	G	18	91
BRCA	TCGA-D8-A1JL	TWF1	SNP	Missense_Mutation	12	44191587	A	G	14	93
BRCA	TCGA-D8-A1JL	DYRK4	SNP	Missense_Mutation	12	4721739	C	A	18	47
BRCA	TCGA-D8-A1JL	MCF2L	SNP	Missense_Mutation	13	113742701	C	G	21	79
BRCA	TCGA-D8-A1JL	NBEA	SNP	Missense_Mutation	13	35770032	A	T	3	54
BRCA	TCGA-D8-A1JL	RNASE7	SNP	Silent	14	21511331	G	A	34	47
BRCA	TCGA-D8-A1JL	TGFB3	SNP	Silent	14	76446997	C	A	21	65
BRCA	TCGA-D8-A1JL	ANGEL1	SNP	Missense_Mutation	14	77274333	G	C	41	67
BRCA	TCGA-D8-A1JL	UNC79	SNP	Silent	14	94088952	C	A	23	36
BRCA	TCGA-D8-A1JL	BCL11B	SNP	Missense_Mutation	14	99640525	G	T	36	98
BRCA	TCGA-D8-A1JL	EIF2AK4	SNP	Missense_Mutation	15	40308734	A	C	3	79
BRCA	TCGA-D8-A1JL	ADAMTSL3	SNP	Silent	15	84651456	T	C	64	56
BRCA	TCGA-D8-A1JL	CHD2	SNP	Missense_Mutation	15	93540500	G	A	40	83
BRCA	TCGA-D8-A1JL	DNAH3	SNP	Missense_Mutation	16	20970646	T	C	49	57
BRCA	TCGA-D8-A1JL	PABPN1L	SNP	Missense_Mutation	16	88932941	G	T	35	61
BRCA	TCGA-D8-A1JL	MYH8	SNP	Missense_Mutation	17	10300124	T	C	58	91
BRCA	TCGA-D8-A1JL	SHISA6	SNP	Silent	17	11166794	G	T	40	35
BRCA	TCGA-D8-A1JL	SLC13A2	SNP	Silent	17	26818766	C	A	25	51
BRCA	TCGA-D8-A1JL	KRT20	SNP	Missense_Mutation	17	39034526	G	T	42	44
BRCA	TCGA-D8-A1JL	RAB37	SNP	Splice_site	17	72725505	G	A	39	48
BRCA	TCGA-D8-A1JL	TP53	SNP	Missense_Mutation	17	7578271	T	A	51	76
BRCA	TCGA-D8-A1JL	CDH7	SNP	Missense_Mutation	18	63476962	G	C	41	99
BRCA	TCGA-D8-A1JL	ZNF682	SNP	Nonsense_Mutation	19	20117638	C	A	21	79
BRCA	TCGA-D8-A1JL	MBD3L1	SNP	Missense_Mutation	19	8953820	A	C	9	58
BRCA	TCGA-D8-A1JL	ARHGAP15	SNP	Missense_Mutation	2	144314050	C	A	18	72
BRCA	TCGA-D8-A1JL	SCN2A	SNP	Missense_Mutation	2	166245597	A	T	8	93
BRCA	TCGA-D8-A1JL	UBR3	SNP	Missense_Mutation	2	170751798	A	G	8	86
BRCA	TCGA-D8-A1JL	RAD51AP2	SNP	Missense_Mutation	2	17696790	T	C	62	77
BRCA	TCGA-D8-A1JL	DNAH7	SNP	Silent	2	196723282	G	A	45	52
BRCA	TCGA-D8-A1JL	HECW2	SNP	Missense_Mutation	2	197081766	C	A	32	100
BRCA	TCGA-D8-A1JL	PLCL1	SNP	Missense_Mutation	2	198949886	G	C	33	57
BRCA	TCGA-D8-A1JL	MAP2	SNP	Missense_Mutation	2	210565003	G	A	34	54
BRCA	TCGA-D8-A1JL	BIRC6	SNP	Missense_Mutation	2	32743984	C	T	17	83
BRCA	TCGA-D8-A1JL	SPTBN1	SNP	Nonsense_Mutation	2	54870174	G	T	45	88
BRCA	TCGA-D8-A1JL	KDM3A	SNP	Missense_Mutation	2	86718115	C	G	29	97
BRCA	TCGA-D8-A1JL	MYT1	SNP	Missense_Mutation	20	62871224	C	A	21	88
BRCA	TCGA-D8-A1JL	TMPRSS15	SNP	Silent	21	19666941	G	T	37	60
BRCA	TCGA-D8-A1JL	SERPIND1	SNP	Silent	22	21134011	C	T	32	35
BRCA	TCGA-D8-A1JL	IDS	SNP	Silent	23	148568556	T	G	49	54
BRCA	TCGA-D8-A1JL	GPR174	SNP	Silent	23	78427212	A	G	7	42
BRCA	TCGA-D8-A1JL	LPP	SNP	Silent	3	188584023	C	G	21	59
BRCA	TCGA-D8-A1JL	CCDC50	SNP	Silent	3	191093233	C	T	21	46
BRCA	TCGA-D8-A1JL	STT3B	SNP	Missense_Mutation	3	31665175	G	A	36	100
BRCA	TCGA-D8-A1JL	CCRL2	SNP	Missense_Mutation	3	46450435	G	A	38	92
BRCA	TCGA-D8-A1JL	CENPE	SNP	Missense_Mutation	4	104061038	C	G	28	54
BRCA	TCGA-D8-A1JL	SORBS2	DEL	Frame_Shift_Del	4	186598448	GGTAGAAATCCTCCGAGTTTGAGAATCTT	-	35	56
BRCA	TCGA-D8-A1JL	CDS1	SNP	Missense_Mutation	4	85538784	A	T	16	92
BRCA	TCGA-D8-A1JL	ARHGAP24	SNP	Missense_Mutation	4	86844830	C	T	29	100
BRCA	TCGA-D8-A1JL	DNAH5	SNP	Silent	5	13735385	G	A	37	16
BRCA	TCGA-D8-A1JL	PCDHB1	SNP	Missense_Mutation	5	140431880	A	T	3	48
BRCA	TCGA-D8-A1JL	IL6ST	SNP	Nonsense_Mutation	5	55237584	C	A	30	93
BRCA	TCGA-D8-A1JL	GCNT2	SNP	Splice_site	6	10557574	A	T	7	81
BRCA	TCGA-D8-A1JL	SLC2A12	SNP	Silent	6	134350198	G	A	35	48
BRCA	TCGA-D8-A1JL	SMOC2	SNP	Missense_Mutation	6	169053662	C	G	24	96
BRCA	TCGA-D8-A1JL	HLA-C	SNP	Silent	6	31239446	G	A	48	65
BRCA	TCGA-D8-A1JL	WNT2	SNP	Silent	7	116955248	A	G	6	51
BRCA	TCGA-D8-A1JL	KCND2	SNP	Missense_Mutation	7	119915360	A	G	16	80
BRCA	TCGA-D8-A1JL	CPED1	SNP	Missense_Mutation	7	120740066	C	T	19	80
BRCA	TCGA-D8-A1JL	CPED1	SNP	Missense_Mutation	7	120935519	A	T	9	68
BRCA	TCGA-D8-A1JL	GRM8	SNP	Nonsense_Mutation	7	126079180	G	C	45	93
BRCA	TCGA-D8-A1JL	SVOPL	SNP	Missense_Mutation	7	138363783	G	T	44	54
BRCA	TCGA-D8-A1JL	RAB19	SNP	Missense_Mutation	7	140110775	C	A	17	64
BRCA	TCGA-D8-A1JL	ARHGEF35	SNP	Missense_Mutation	7	143884086	G	T	33	64
BRCA	TCGA-D8-A1JL	PAXIP1	SNP	Splice_Site	7	154753359	C	G	32	96
BRCA	TCGA-D8-A1JL	HOXA13	SNP	Silent	7	27238809	C	G	27	56
BRCA	TCGA-D8-A1JL	CPVL	SNP	Missense_Mutation	7	29135737	C	A	17	65
BRCA	TCGA-D8-A1JL	RPL8	INS	Frame_Shift_Ins	8	146016828	-	GG	63	51
BRCA	TCGA-D8-A1JL	POLR3D	SNP	Missense_Mutation	8	22106154	C	G	28	49
BRCA	TCGA-D8-A1JL	RHOBTB2	SNP	Silent	8	22862905	C	T	19	49
BRCA	TCGA-D8-A1JL	CSMD1	SNP	Missense_Mutation	8	3224613	T	C	55	90
BRCA	TCGA-D8-A1JL	ARFGEF1	SNP	Missense_Mutation	8	68123739	T	C	55	55
BRCA	TCGA-D8-A1JL	ZNF705G	SNP	Silent	8	7217781	T	A	49	60
BRCA	TCGA-D8-A1JL	TMEM245	SNP	Missense_Mutation	9	111812873	G	T	35	87
BRCA	TCGA-D8-A1JL	FBXO10	SNP	Missense_Mutation	9	37521593	C	G	29	94
BRCA	TCGA-D8-A1JL	SHB	SNP	Missense_Mutation	9	37948743	T	G	59	85
BRCA	TCGA-D8-A1JL	KIF27	SNP	Missense_Mutation	9	86514613	A	G	14	57
BRCA	TCGA-D8-A1JM	PRAMEF16	DNP	Missense_Mutation	1	13497591	AA	GG	9	43
BRCA	TCGA-D8-A1JM	YY1AP1	SNP	Missense_Mutation	1	155630341	T	C	52	55
BRCA	TCGA-D8-A1JM	INSRR	SNP	Missense_Mutation	1	156812974	C	T	23	79
BRCA	TCGA-D8-A1JM	TNR	SNP	Missense_Mutation	1	175355251	C	T	23	96
BRCA	TCGA-D8-A1JM	OR2T10	SNP	Missense_Mutation	1	248756685	G	T	41	86
BRCA	TCGA-D8-A1JM	HDAC1	SNP	Silent	1	32796496	G	T	39	43
BRCA	TCGA-D8-A1JM	HECTD3	SNP	Missense_Mutation	1	45475092	T	C	49	74
BRCA	TCGA-D8-A1JM	FRMD4A	SNP	Silent	10	13699219	C	T	23	37
BRCA	TCGA-D8-A1JM	EXOC6	SNP	Missense_Mutation	10	94679793	A	G	8	82
BRCA	TCGA-D8-A1JM	KRT81	INS	Frame_Shift_Ins	12	52682214	-	T	20	47
BRCA	TCGA-D8-A1JM	NEUROD4	SNP	Nonsense_Mutation	12	55420713	C	T	29	97
BRCA	TCGA-D8-A1JM	CLEC4C	SNP	Silent	12	7894054	T	A	63	51
BRCA	TCGA-D8-A1JM	ALPK3	SNP	Missense_Mutation	15	85370755	A	C	10	84
BRCA	TCGA-D8-A1JM	SLC5A11	SNP	Missense_Mutation	16	24921651	C	T	31	62
BRCA	TCGA-D8-A1JM	APOBR	SNP	Silent	16	28506485	G	A	38	29
BRCA	TCGA-D8-A1JM	MYH1	SNP	Missense_Mutation	17	10419585	C	A	29	100
BRCA	TCGA-D8-A1JM	COASY	SNP	Missense_Mutation	17	40714971	C	A	26	83
BRCA	TCGA-D8-A1JM	CNTNAP1	DNP	Missense_Mutation	17	40847798	CT	GG	32	51
BRCA	TCGA-D8-A1JM	KIF2B	SNP	Silent	17	51900535	G	A	39	29
BRCA	TCGA-D8-A1JM	CA4	SNP	Nonstop_Mutation	17	58235472	T	C	53	37
BRCA	TCGA-D8-A1JM	STK11	SNP	Nonsense_Mutation	19	1218492	C	T	25	93
BRCA	TCGA-D8-A1JM	LPAR2	SNP	Silent	19	19735340	G	A	36	65
BRCA	TCGA-D8-A1JM	ZNF548	SNP	Missense_Mutation	19	57911168	G	T	48	39
BRCA	TCGA-D8-A1JM	XAB2	SNP	Silent	19	7688749	C	G	25	49
BRCA	TCGA-D8-A1JM	COL4A3	SNP	Silent	2	228163516	A	G	6	47
BRCA	TCGA-D8-A1JM	TCF7L1	SNP	Missense_Mutation	2	85536554	C	G	24	78
BRCA	TCGA-D8-A1JM	VSTM2L	SNP	Nonsense_Mutation	20	36572460	C	T	19	60
BRCA	TCGA-D8-A1JM	RALGAPB	SNP	Silent	20	37177429	A	T	5	50
BRCA	TCGA-D8-A1JM	TOX2	SNP	Missense_Mutation	20	42683073	C	T	23	26
BRCA	TCGA-D8-A1JM	LAMA5	SNP	Missense_Mutation	20	60886769	G	T	39	60
BRCA	TCGA-D8-A1JM	MYT1	DEL	In_Frame_Del	20	62863610	GCA	-	42	58
BRCA	TCGA-D8-A1JM	USP25	SNP	Silent	21	17242407	G	A	41	50
BRCA	TCGA-D8-A1JM	PIWIL3	SNP	Missense_Mutation	22	25131779	C	A	26	77
BRCA	TCGA-D8-A1JM	CD99L2	SNP	Silent	23	149999738	C	T	21	71
BRCA	TCGA-D8-A1JM	BCAP31	SNP	Splice_site	23	152986328	G	A	37	43
BRCA	TCGA-D8-A1JM	NLGN1	SNP	Nonsense_Mutation	3	173322406	C	A	25	73
BRCA	TCGA-D8-A1JM	NBEAL2	SNP	Missense_Mutation	3	47045665	G	A	37	96
BRCA	TCGA-D8-A1JM	ZMYND10	SNP	Missense_Mutation	3	50379059	C	G	20	54
BRCA	TCGA-D8-A1JM	CSNK1G3	SNP	Nonsense_Mutation	5	122881422	C	A	31	67
BRCA	TCGA-D8-A1JM	TRDN	SNP	Missense_Mutation	6	123892166	C	T	28	76
BRCA	TCGA-D8-A1JM	FRMD1	SNP	Missense_Mutation	6	168462600	G	A	40	73
BRCA	TCGA-D8-A1JM	DACT2	SNP	Missense_Mutation	6	168709386	C	T	31	62
BRCA	TCGA-D8-A1JM	WDR27	SNP	Missense_Mutation	6	170070709	C	A	17	49
BRCA	TCGA-D8-A1JM	PLXNA4	SNP	Silent	7	132193405	G	T	45	50
BRCA	TCGA-D8-A1JM	LUC7L2	SNP	Missense_Mutation	7	139094326	G	C	34	56
BRCA	TCGA-D8-A1JM	NOS3	SNP	Missense_Mutation	7	150697610	G	T	41	95
BRCA	TCGA-D8-A1JM	CHD7	SNP	Silent	8	61777880	T	A	55	59
BRCA	TCGA-D8-A1JM	CHMP4C	SNP	Missense_Mutation	8	82670443	C	T	23	55
BRCA	TCGA-D8-A1JM	ADAMTSL1	SNP	Splice_site	9	18892387	G	T	44	59
BRCA	TCGA-D8-A1JM	NFX1	SNP	Missense_Mutation	9	33364082	G	T	36	73
BRCA	TCGA-D8-A1JN	UBIAD1	SNP	Missense_Mutation	1	11345847	G	A	37	94
BRCA	TCGA-D8-A1JN	MAGI3	SNP	Silent	1	114165576	G	A	45	51
BRCA	TCGA-D8-A1JN	CSDE1	SNP	Silent	1	115284280	C	T	32	67
BRCA	TCGA-D8-A1JN	SV2A	SNP	Missense_Mutation	1	149885119	C	T	29	98
BRCA	TCGA-D8-A1JN	MCL1	SNP	Missense_Mutation	1	150550932	C	T	31	73
BRCA	TCGA-D8-A1JN	SNX27	SNP	Silent	1	151630881	A	T	12	46
BRCA	TCGA-D8-A1JN	KIRREL	SNP	Missense_Mutation	1	158054238	G	A	39	82
BRCA	TCGA-D8-A1JN	OR10Z1	SNP	Missense_Mutation	1	158576979	C	T	29	83
BRCA	TCGA-D8-A1JN	SPTA1	SNP	Missense_Mutation	1	158615335	C	T	30	93
BRCA	TCGA-D8-A1JN	GORAB	SNP	Missense_Mutation	1	170508363	C	T	21	85
BRCA	TCGA-D8-A1JN	PRRC2C	SNP	Missense_Mutation	1	171527054	C	G	29	84
BRCA	TCGA-D8-A1JN	PPP1R12B	SNP	Silent	1	202418189	C	A	32	48
BRCA	TCGA-D8-A1JN	TLR5	SNP	Silent	1	223284238	G	C	45	48
BRCA	TCGA-D8-A1JN	ACBD3	SNP	Missense_Mutation	1	226334330	C	G	32	100
BRCA	TCGA-D8-A1JN	TAF5L	SNP	Silent	1	229738611	G	A	33	75
BRCA	TCGA-D8-A1JN	CSMD2	SNP	Missense_Mutation	1	34006792	C	A	32	76
BRCA	TCGA-D8-A1JN	GRIK3	SNP	Silent	1	37267521	G	A	45	70
BRCA	TCGA-D8-A1JN	SZT2	SNP	Missense_Mutation	1	43892848	C	T	29	79
BRCA	TCGA-D8-A1JN	TESK2	SNP	Silent	1	45821062	A	T	7	52
BRCA	TCGA-D8-A1JN	RPF1	SNP	Silent	1	84945165	C	T	29	79
BRCA	TCGA-D8-A1JN	FAM175B	SNP	Missense_Mutation	10	126523424	G	A	45	74
BRCA	TCGA-D8-A1JN	EGR2	SNP	Missense_Mutation	10	64573125	C	T	32	83
BRCA	TCGA-D8-A1JN	GATA3	INS	Frame_Shift_Ins	10	8115717	-	CTATG	10	76
BRCA	TCGA-D8-A1JN	NOC3L	SNP	Splice_Site	10	96106314	C	A	32	96
BRCA	TCGA-D8-A1JN	MUC2	SNP	Silent	11	1101059	C	T	32	48
BRCA	TCGA-D8-A1JN	TMPRSS5	SNP	Silent	11	113563803	G	C	45	57
BRCA	TCGA-D8-A1JN	APLP2	SNP	Silent	11	129993538	C	T	24	69
BRCA	TCGA-D8-A1JN	SLC43A1	SNP	Silent	11	57263539	G	A	37	0
BRCA	TCGA-D8-A1JN	OR5B12	SNP	Missense_Mutation	11	58207576	C	T	29	49
BRCA	TCGA-D8-A1JN	MPEG1	SNP	Missense_Mutation	11	58980260	C	A	30	48
BRCA	TCGA-D8-A1JN	STX3	SNP	Missense_Mutation	11	59559682	G	A	37	97
BRCA	TCGA-D8-A1JN	INCENP	SNP	Silent	11	61897585	C	T	32	56
BRCA	TCGA-D8-A1JN	INCENP	SNP	Missense_Mutation	11	61897900	C	G	29	54
BRCA	TCGA-D8-A1JN	GANAB	SNP	Missense_Mutation	11	62398569	G	C	45	53
BRCA	TCGA-D8-A1JN	SLC22A25	SNP	Nonsense_Mutation	11	62996883	G	C	45	63
BRCA	TCGA-D8-A1JN	TPP1	SNP	Missense_Mutation	11	6637688	G	A	45	64
BRCA	TCGA-D8-A1JN	SYTL2	SNP	Nonsense_Mutation	11	85435306	G	A	45	60
BRCA	TCGA-D8-A1JN	KCTD10	SNP	Missense_Mutation	12	109889615	C	T	30	98
BRCA	TCGA-D8-A1JN	DDX54	SNP	Missense_Mutation	12	113599116	C	T	31	60
BRCA	TCGA-D8-A1JN	RAB35	SNP	Missense_Mutation	12	120541722	G	C	45	72
BRCA	TCGA-D8-A1JN	ESPL1	SNP	Nonsense_Mutation	12	53680434	C	G	29	62
BRCA	TCGA-D8-A1JN	SHMT2	SNP	Missense_Mutation	12	57626352	G	A	45	66
BRCA	TCGA-D8-A1JN	CHD4	SNP	Missense_Mutation	12	6701207	T	A	51	89
BRCA	TCGA-D8-A1JN	CHD4	SNP	Splice_Site	12	6715439	C	T	18	67
BRCA	TCGA-D8-A1JN	CPSF6	SNP	Missense_Mutation	12	69656307	C	T	27	61
BRCA	TCGA-D8-A1JN	PTPRB	SNP	Missense_Mutation	12	70989934	C	T	29	58
BRCA	TCGA-D8-A1JN	TMCC3	SNP	Missense_Mutation	12	94972209	C	G	24	72
BRCA	TCGA-D8-A1JN	ING1	SNP	Silent	13	111371874	C	T	21	35
BRCA	TCGA-D8-A1JN	PARP4	SNP	Missense_Mutation	13	25049681	C	T	30	72
BRCA	TCGA-D8-A1JN	CDK8	SNP	Splice_site	13	26967647	G	A	35	98
BRCA	TCGA-D8-A1JN	MTUS2	SNP	Silent	13	29599120	G	A	45	52
BRCA	TCGA-D8-A1JN	SPG20	SNP	Silent	13	36886556	C	T	32	70
BRCA	TCGA-D8-A1JN	FREM2	SNP	Missense_Mutation	13	39438637	T	A	62	92
BRCA	TCGA-D8-A1JN	SLC15A1	SNP	Silent	13	99338507	C	T	29	62
BRCA	TCGA-D8-A1JN	DOCK9	SNP	Missense_Mutation	13	99460049	C	G	32	97
BRCA	TCGA-D8-A1JN	IGHD	SNP	Silent	14	106308334	C	T	32	52
BRCA	TCGA-D8-A1JN	FOXA1	SNP	Missense_Mutation	14	38061347	C	A	26	93
BRCA	TCGA-D8-A1JN	FSCB	SNP	Missense_Mutation	14	44975125	C	T	29	54
BRCA	TCGA-D8-A1JN	MDGA2	SNP	Missense_Mutation	14	47389259	C	A	29	62
BRCA	TCGA-D8-A1JN	CDKL1	SNP	Missense_Mutation	14	50862466	C	T	29	95
BRCA	TCGA-D8-A1JN	ZFP106	SNP	Missense_Mutation	15	42743279	C	G	29	49
BRCA	TCGA-D8-A1JN	DUOX2	SNP	Missense_Mutation	15	45398520	C	T	30	92
BRCA	TCGA-D8-A1JN	RPS27L	SNP	Missense_Mutation	15	63447802	G	A	33	59
BRCA	TCGA-D8-A1JN	HERC1	SNP	Missense_Mutation	15	64010840	C	T	31	100
BRCA	TCGA-D8-A1JN	SLC24A1	SNP	Silent	15	65946274	C	T	32	65
BRCA	TCGA-D8-A1JN	PARP6	SNP	Nonsense_Mutation	15	72552860	G	A	45	81
BRCA	TCGA-D8-A1JN	TMC5	SNP	Missense_Mutation	16	19477531	C	G	18	58
BRCA	TCGA-D8-A1JN	PRKCB	SNP	Missense_Mutation	16	24166032	G	A	33	87
BRCA	TCGA-D8-A1JN	ZNF629	SNP	Missense_Mutation	16	30795272	G	A	47	65
BRCA	TCGA-D8-A1JN	ITGAD	SNP	Missense_Mutation	16	31408729	C	T	19	49
BRCA	TCGA-D8-A1JN	ADCY9	SNP	Missense_Mutation	16	4015811	C	T	31	78
BRCA	TCGA-D8-A1JN	TAT	SNP	Silent	16	71602632	G	A	41	66
BRCA	TCGA-D8-A1JN	RBFOX1	SNP	Silent	16	7568361	G	C	37	50
BRCA	TCGA-D8-A1JN	ANKRD11	SNP	Missense_Mutation	16	89341577	G	A	38	75
BRCA	TCGA-D8-A1JN	USP7	SNP	Missense_Mutation	16	8988916	C	T	30	100
BRCA	TCGA-D8-A1JN	NF1	SNP	Nonsense_Mutation	17	29527590	C	T	29	99
BRCA	TCGA-D8-A1JN	EFCAB3	SNP	Missense_Mutation	17	60447652	G	T	45	49
BRCA	TCGA-D8-A1JN	TMC6	SNP	Silent	17	76117099	G	A	33	53
BRCA	TCGA-D8-A1JN	EMR3	SNP	Silent	19	14749063	G	C	45	76
BRCA	TCGA-D8-A1JN	CPAMD8	SNP	Silent	19	17015307	G	A	33	55
BRCA	TCGA-D8-A1JN	ZNF681	SNP	Missense_Mutation	19	23928047	C	T	32	52
BRCA	TCGA-D8-A1JN	ACTN4	SNP	Missense_Mutation	19	39207792	G	A	41	81
BRCA	TCGA-D8-A1JN	ZNF780B	SNP	Missense_Mutation	19	40540443	G	A	45	64
BRCA	TCGA-D8-A1JN	B3GNT8	SNP	Missense_Mutation	19	41931969	C	T	19	94
BRCA	TCGA-D8-A1JN	ANKRD24	DEL	Frame_Shift_Del	19	4224161	ACAG	-	14	74
BRCA	TCGA-D8-A1JN	ARHGAP35	SNP	Missense_Mutation	19	47425022	G	C	33	64
BRCA	TCGA-D8-A1JN	ZNF114	SNP	Missense_Mutation	19	48789311	G	C	33	50
BRCA	TCGA-D8-A1JN	PPFIA3	SNP	Missense_Mutation	19	49637900	C	T	30	77
BRCA	TCGA-D8-A1JN	CCDC155	SNP	Splice_site	19	49912287	G	A	45	65
BRCA	TCGA-D8-A1JN	IRF3	SNP	Missense_Mutation	19	50164064	C	T	30	76
BRCA	TCGA-D8-A1JN	ZNF766	SNP	Missense_Mutation	19	52793484	C	T	31	47
BRCA	TCGA-D8-A1JN	INSR	SNP	Missense_Mutation	19	7166387	C	T	23	80
BRCA	TCGA-D8-A1JN	EVI5L	SNP	Silent	19	7917980	G	A	33	71
BRCA	TCGA-D8-A1JN	MUC16	SNP	Missense_Mutation	19	9086981	C	T	32	51
BRCA	TCGA-D8-A1JN	OR7D4	SNP	Silent	19	9325094	G	T	33	55
BRCA	TCGA-D8-A1JN	ZNF266	SNP	Silent	19	9524224	G	A	38	47
BRCA	TCGA-D8-A1JN	ZNF121	SNP	Missense_Mutation	19	9677557	G	A	45	47
BRCA	TCGA-D8-A1JN	LIMS1	SNP	Silent	2	109276172	C	T	31	50
BRCA	TCGA-D8-A1JN	ZC3H6	SNP	Missense_Mutation	2	113089006	C	G	32	54
BRCA	TCGA-D8-A1JN	THSD7B	SNP	Missense_Mutation	2	138000073	C	T	22	85
BRCA	TCGA-D8-A1JN	TTN	SNP	Missense_Mutation	2	179499240	C	G	29	81
BRCA	TCGA-D8-A1JN	TTN	SNP	Missense_Mutation	2	179649010	C	G	32	86
BRCA	TCGA-D8-A1JN	ALS2CR11	SNP	Silent	2	202410312	C	T	31	42
BRCA	TCGA-D8-A1JN	FN1	SNP	Missense_Mutation	2	216284067	C	T	21	100
BRCA	TCGA-D8-A1JN	IRS1	SNP	Missense_Mutation	2	227661256	C	T	29	53
BRCA	TCGA-D8-A1JN	PCYOX1	SNP	Missense_Mutation	2	70486522	C	T	29	98
BRCA	TCGA-D8-A1JN	POLR1A	SNP	Silent	2	86260895	C	G	29	57
BRCA	TCGA-D8-A1JN	E2F1	INS	Frame_Shift_Ins	20	32267771	-	A	41	85
BRCA	TCGA-D8-A1JN	ADAM33	SNP	Missense_Mutation	20	3654437	C	T	23	56
BRCA	TCGA-D8-A1JN	ALG12	DEL	Splice_Site	22	50301366	CA	-	29	68
BRCA	TCGA-D8-A1JN	FAM162A	SNP	Missense_Mutation	3	122121674	G	C	45	49
BRCA	TCGA-D8-A1JN	SEMA5B	SNP	Missense_Mutation	3	122667367	G	T	44	44
BRCA	TCGA-D8-A1JN	IFT122	SNP	Silent	3	129183529	C	A	29	77
BRCA	TCGA-D8-A1JN	IQSEC1	SNP	Silent	3	12977058	G	A	45	57
BRCA	TCGA-D8-A1JN	DBR1	SNP	Missense_Mutation	3	137886069	G	C	33	82
BRCA	TCGA-D8-A1JN	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A1JN	AMIGO3	SNP	Silent	3	49755912	G	A	37	48
BRCA	TCGA-D8-A1JN	TBC1D23	SNP	Silent	3	99979901	G	C	37	54
BRCA	TCGA-D8-A1JN	BANK1	SNP	Missense_Mutation	4	102839158	T	G	64	51
BRCA	TCGA-D8-A1JN	SLC34A2	SNP	Silent	4	25671395	C	T	29	51
BRCA	TCGA-D8-A1JN	CEP120	SNP	Nonsense_Mutation	5	122714068	C	A	30	76
BRCA	TCGA-D8-A1JN	PCDHGA2	SNP	Missense_Mutation	5	140719585	G	A	45	46
BRCA	TCGA-D8-A1JN	ERGIC1	SNP	Silent	5	172324039	C	T	32	54
BRCA	TCGA-D8-A1JN	NIPBL	DEL	Frame_Shift_Del	5	37026381	CAATGACAAAGAAG	-	17	52
BRCA	TCGA-D8-A1JN	LIFR	SNP	Nonsense_Mutation	5	38490331	G	A	45	88
BRCA	TCGA-D8-A1JN	MEF2C	SNP	Silent	5	88056820	C	T	32	82
BRCA	TCGA-D8-A1JN	ARSK	SNP	Missense_Mutation	5	94936613	G	C	33	63
BRCA	TCGA-D8-A1JN	PCSK1	SNP	Silent	5	95744025	C	T	31	22
BRCA	TCGA-D8-A1JN	NUS1	SNP	Missense_Mutation	6	117997186	C	G	27	92
BRCA	TCGA-D8-A1JN	RNF182	SNP	Missense_Mutation	6	13977702	C	G	32	74
BRCA	TCGA-D8-A1JN	BRPF3	SNP	Silent	6	36181964	C	G	32	53
BRCA	TCGA-D8-A1JN	PTK7	SNP	Missense_Mutation	6	43112230	G	A	33	97
BRCA	TCGA-D8-A1JN	DSP	SNP	Nonsense_Mutation	6	7578090	C	T	29	97
BRCA	TCGA-D8-A1JN	MEPCE	SNP	Missense_Mutation	7	100030928	G	C	33	76
BRCA	TCGA-D8-A1JN	POLR2J	SNP	Missense_Mutation	7	102116688	G	T	43	97
BRCA	TCGA-D8-A1JN	SLC26A3	SNP	Nonsense_Mutation	7	107408026	C	A	29	58
BRCA	TCGA-D8-A1JN	RNF148	SNP	Silent	7	122342073	G	A	45	54
BRCA	TCGA-D8-A1JN	FASTK	SNP	Silent	7	150774051	C	G	31	20
BRCA	TCGA-D8-A1JN	GRM3	SNP	Missense_Mutation	7	86468257	G	T	41	68
BRCA	TCGA-D8-A1JN	PEX1	SNP	Nonsense_Mutation	7	92120666	C	A	29	82
BRCA	TCGA-D8-A1JN	ADCY8	SNP	Silent	8	132051878	C	T	24	62
BRCA	TCGA-D8-A1JN	PRKDC	SNP	Silent	8	48694776	C	T	29	53
BRCA	TCGA-D8-A1JN	PRDM14	SNP	Missense_Mutation	8	70981503	G	A	40	77
BRCA	TCGA-D8-A1JN	TMEM245	SNP	Silent	9	111849507	G	A	37	13
BRCA	TCGA-D8-A1JN	PDCL	SNP	Silent	9	125582781	C	T	32	51
BRCA	TCGA-D8-A1JN	LRSAM1	SNP	Missense_Mutation	9	130249962	G	A	37	59
BRCA	TCGA-D8-A1JN	OBP2A	SNP	Missense_Mutation	9	138439791	C	T	27	44
BRCA	TCGA-D8-A1JN	DNAJB5	SNP	Missense_Mutation	9	34996744	G	A	37	84
BRCA	TCGA-D8-A1JN	RGP1	SNP	Missense_Mutation	9	35749395	G	A	37	50
BRCA	TCGA-D8-A1JN	NOL8	SNP	Missense_Mutation	9	95086375	G	T	44	50
BRCA	TCGA-D8-A1JP	RSBN1	SNP	Missense_Mutation	1	114340437	A	G	3	81
BRCA	TCGA-D8-A1JP	PEX19	SNP	Missense_Mutation	1	160252800	A	C	2	52
BRCA	TCGA-D8-A1JP	LY9	SNP	Missense_Mutation	1	160769623	A	C	8	58
BRCA	TCGA-D8-A1JP	CDK11A	SNP	Silent	1	1635323	C	A	29	52
BRCA	TCGA-D8-A1JP	CEP350	SNP	Missense_Mutation	1	180063342	C	T	17	55
BRCA	TCGA-D8-A1JP	RGSL1	SNP	Missense_Mutation	1	182441609	A	T	14	51
BRCA	TCGA-D8-A1JP	RGS8	SNP	Missense_Mutation	1	182640821	G	T	44	59
BRCA	TCGA-D8-A1JP	OTUD3	SNP	Missense_Mutation	1	20230830	A	T	10	65
BRCA	TCGA-D8-A1JP	PIK3C2B	SNP	Silent	1	204412686	G	A	41	55
BRCA	TCGA-D8-A1JP	EPRS	SNP	Missense_Mutation	1	220195746	T	A	50	93
BRCA	TCGA-D8-A1JP	OR2M2	DEL	Frame_Shift_Del	1	248344298	CAAAATACTAG	-	29	55
BRCA	TCGA-D8-A1JP	BSND	SNP	Missense_Mutation	1	55464896	G	T	48	52
BRCA	TCGA-D8-A1JP	MSH4	SNP	Silent	1	76349385	T	G	53	56
BRCA	TCGA-D8-A1JP	LPPR4	SNP	Missense_Mutation	1	99764684	G	A	46	100
BRCA	TCGA-D8-A1JP	PRKG1	SNP	Missense_Mutation	10	53893644	C	A	18	74
BRCA	TCGA-D8-A1JP	UEVLD	DEL	In_Frame_Del	11	18566322	GTTACATAG	-	48	100
BRCA	TCGA-D8-A1JP	ATHL1	SNP	Missense_Mutation	11	290850	C	G	24	55
BRCA	TCGA-D8-A1JP	OR5F1	SNP	Silent	11	55761642	G	A	34	46
BRCA	TCGA-D8-A1JP	OR10Q1	SNP	Missense_Mutation	11	57995900	C	A	22	51
BRCA	TCGA-D8-A1JP	PPP6R3	SNP	Missense_Mutation	11	68359089	C	A	17	100
BRCA	TCGA-D8-A1JP	FOLR1	SNP	Missense_Mutation	11	71907115	A	T	11	55
BRCA	TCGA-D8-A1JP	DAO	SNP	Silent	12	109278917	C	G	23	46
BRCA	TCGA-D8-A1JP	RNF10	SNP	Missense_Mutation	12	121001615	G	A	41	100
BRCA	TCGA-D8-A1JP	ANKLE2	SNP	Missense_Mutation	12	133331390	C	A	17	39
BRCA	TCGA-D8-A1JP	LRRK2	SNP	Missense_Mutation	12	40699719	C	T	32	85
BRCA	TCGA-D8-A1JP	PFKM	SNP	Silent	12	48539018	T	C	52	62
BRCA	TCGA-D8-A1JP	KRT73	SNP	Missense_Mutation	12	53002135	C	A	22	65
BRCA	TCGA-D8-A1JP	PMEL	SNP	Missense_Mutation	12	56352282	G	T	34	52
BRCA	TCGA-D8-A1JP	MON2	SNP	Missense_Mutation	12	62929447	A	C	14	90
BRCA	TCGA-D8-A1JP	C1S	SNP	Nonsense_Mutation	12	7177194	C	T	17	70
BRCA	TCGA-D8-A1JP	MIPEP	SNP	Missense_Mutation	13	24438286	G	A	33	52
BRCA	TCGA-D8-A1JP	C1QTNF9B	SNP	Silent	13	24465974	G	A	42	48
BRCA	TCGA-D8-A1JP	EML1	SNP	Missense_Mutation	14	100363567	G	T	44	100
BRCA	TCGA-D8-A1JP	OR4K2	SNP	Missense_Mutation	14	20344814	C	G	24	73
BRCA	TCGA-D8-A1JP	HSPA2	SNP	Missense_Mutation	14	65008759	G	A	37	99
BRCA	TCGA-D8-A1JP	PCNX	SNP	Missense_Mutation	14	71576307	C	T	21	86
BRCA	TCGA-D8-A1JP	NUMB	SNP	Missense_Mutation	14	73743366	T	G	61	77
BRCA	TCGA-D8-A1JP	KCNK13	SNP	Missense_Mutation	14	90650936	C	G	32	51
BRCA	TCGA-D8-A1JP	ITPK1	SNP	Silent	14	93424627	G	A	35	71
BRCA	TCGA-D8-A1JP	CYP1A2	SNP	Missense_Mutation	15	75042230	C	G	28	46
BRCA	TCGA-D8-A1JP	ST20-MTHFS	SNP	Missense_Mutation	15	80181544	C	G	21	82
BRCA	TCGA-D8-A1JP	CPEB1	SNP	Splice_Site	15	83218208	A	C	14	94
BRCA	TCGA-D8-A1JP	TICRR	SNP	Missense_Mutation	15	90167547	G	A	35	50
BRCA	TCGA-D8-A1JP	FURIN	SNP	Silent	15	91419739	C	T	19	44
BRCA	TCGA-D8-A1JP	SLCO3A1	SNP	Splice_site	15	92638112	A	T	9	52
BRCA	TCGA-D8-A1JP	BFAR	SNP	Missense_Mutation	16	14748927	C	G	28	95
BRCA	TCGA-D8-A1JP	GTF3C1	SNP	Missense_Mutation	16	27517381	C	T	24	66
BRCA	TCGA-D8-A1JP	RAB11FIP3	SNP	Silent	16	569771	G	A	47	70
BRCA	TCGA-D8-A1JP	BANP	SNP	Missense_Mutation	16	88014716	C	A	21	80
BRCA	TCGA-D8-A1JP	SGSM2	SNP	Missense_Mutation	17	2282366	T	C	59	78
BRCA	TCGA-D8-A1JP	OR3A1	SNP	Missense_Mutation	17	3195744	T	G	63	64
BRCA	TCGA-D8-A1JP	ZMYND15	SNP	Missense_Mutation	17	4648519	G	C	36	62
BRCA	TCGA-D8-A1JP	GEMIN4	SNP	Missense_Mutation	17	649578	C	A	17	77
BRCA	TCGA-D8-A1JP	GALR2	SNP	Missense_Mutation	17	74071177	C	A	18	64
BRCA	TCGA-D8-A1JP	MC2R	SNP	Silent	18	13884723	G	A	45	47
BRCA	TCGA-D8-A1JP	COL5A3	SNP	Missense_Mutation	19	10097037	G	A	38	42
BRCA	TCGA-D8-A1JP	NCAN	SNP	Silent	19	19327774	G	T	40	40
BRCA	TCGA-D8-A1JP	ANKRD27	SNP	Silent	19	33134043	C	A	29	50
BRCA	TCGA-D8-A1JP	SIPA1L3	SNP	Missense_Mutation	19	38610164	C	G	22	100
BRCA	TCGA-D8-A1JP	ZFP112	SNP	Silent	19	44832009	T	G	54	46
BRCA	TCGA-D8-A1JP	SYMPK	SNP	Silent	19	46334728	A	C	2	51
BRCA	TCGA-D8-A1JP	MLLT1	SNP	Missense_Mutation	19	6270707	C	G	30	96
BRCA	TCGA-D8-A1JP	MUC16	SNP	Silent	19	9089493	G	T	43	36
BRCA	TCGA-D8-A1JP	FHL2	SNP	Missense_Mutation	2	105979846	A	T	7	92
BRCA	TCGA-D8-A1JP	SCN9A	SNP	Missense_Mutation	2	167163093	T	C	51	94
BRCA	TCGA-D8-A1JP	RBM45	SNP	Missense_Mutation	2	178988887	C	G	29	96
BRCA	TCGA-D8-A1JP	TTN	SNP	Missense_Mutation	2	179433377	T	C	60	67
BRCA	TCGA-D8-A1JP	PIKFYVE	SNP	Missense_Mutation	2	209190360	A	G	9	91
BRCA	TCGA-D8-A1JP	CRNKL1	SNP	Missense_Mutation	20	20033136	C	A	28	58
BRCA	TCGA-D8-A1JP	ZHX3	SNP	Missense_Mutation	20	39831411	T	C	49	39
BRCA	TCGA-D8-A1JP	CHD6	SNP	Nonsense_Mutation	20	40076584	G	T	36	65
BRCA	TCGA-D8-A1JP	TCFL5	DEL	Frame_Shift_Del	20	61473372	AGGACAGG	-	7	33
BRCA	TCGA-D8-A1JP	TCFL5	DEL	In_Frame_Del	20	61473381	CACCAAGGA	-	29	61
BRCA	TCGA-D8-A1JP	PAK7	SNP	Missense_Mutation	20	9546953	G	T	36	85
BRCA	TCGA-D8-A1JP	DYRK1A	SNP	Missense_Mutation	21	38845158	G	C	33	99
BRCA	TCGA-D8-A1JP	ADORA2A	DNP	Missense_Mutation	22	24837011	GC	TT	38	61
BRCA	TCGA-D8-A1JP	ZBED4	SNP	Missense_Mutation	22	50279223	C	T	28	67
BRCA	TCGA-D8-A1JP	TBC1D8B	SNP	Missense_Mutation	23	106066568	G	A	48	93
BRCA	TCGA-D8-A1JP	GABRA3	SNP	Silent	23	151514123	G	T	45	69
BRCA	TCGA-D8-A1JP	CASK	DEL	Frame_Shift_Del	23	41782237	GCCATGGTCCGGAGGGGATAGCGGCC	-	42	88
BRCA	TCGA-D8-A1JP	STARD8	SNP	Missense_Mutation	23	67941499	A	C	1	54
BRCA	TCGA-D8-A1JP	CCDC80	SNP	Missense_Mutation	3	112358086	T	A	50	78
BRCA	TCGA-D8-A1JP	GPR156	DEL	In_Frame_Del	3	119899984	GAT	-	33	81
BRCA	TCGA-D8-A1JP	KALRN	SNP	Missense_Mutation	3	124281865	C	G	22	97
BRCA	TCGA-D8-A1JP	ZNF148	SNP	Missense_Mutation	3	124951438	G	A	33	74
BRCA	TCGA-D8-A1JP	P2RY13	SNP	Silent	3	151046415	G	C	45	52
BRCA	TCGA-D8-A1JP	LEKR1	SNP	Missense_Mutation	3	156570747	T	C	52	51
BRCA	TCGA-D8-A1JP	PIK3CA	SNP	Missense_Mutation	3	178916946	G	C	33	62
BRCA	TCGA-D8-A1JP	BCL6	SNP	Missense_Mutation	3	187447483	G	A	47	65
BRCA	TCGA-D8-A1JP	IL1RAP	SNP	Missense_Mutation	3	190374301	G	T	47	75
BRCA	TCGA-D8-A1JP	EBF1	SNP	Missense_Mutation	5	158135133	T	G	60	91
BRCA	TCGA-D8-A1JP	CDHR2	SNP	Missense_Mutation	5	176004753	T	A	59	78
BRCA	TCGA-D8-A1JP	ZNF346	SNP	Missense_Mutation	5	176471467	G	C	36	60
BRCA	TCGA-D8-A1JP	GFM2	SNP	Missense_Mutation	5	74047238	T	C	57	71
BRCA	TCGA-D8-A1JP	MCHR2	SNP	Silent	6	100369062	G	A	33	48
BRCA	TCGA-D8-A1JP	PRDM1	SNP	Missense_Mutation	6	106554322	A	G	6	92
BRCA	TCGA-D8-A1JP	FIG4	SNP	Missense_Mutation	6	110064914	T	A	56	90
BRCA	TCGA-D8-A1JP	ZUFSP	DEL	In_Frame_Del	6	116977852	GTTTTT	-	36	98
BRCA	TCGA-D8-A1JP	NKAIN2	SNP	Splice_site	6	124676413	T	C	57	84
BRCA	TCGA-D8-A1JP	KIAA1244	SNP	Silent	6	138655269	C	A	32	64
BRCA	TCGA-D8-A1JP	FNDC1	SNP	Silent	6	159670141	G	T	45	62
BRCA	TCGA-D8-A1JP	LPA	SNP	Missense_Mutation	6	160958958	C	A	17	82
BRCA	TCGA-D8-A1JP	ZSCAN12	SNP	Silent	6	28359437	G	A	47	48
BRCA	TCGA-D8-A1JP	MUC12	SNP	Missense_Mutation	7	100634488	C	T	29	47
BRCA	TCGA-D8-A1JP	LAMB4	SNP	Missense_Mutation	7	107748102	C	A	30	77
BRCA	TCGA-D8-A1JP	CCDC136	SNP	Missense_Mutation	7	128452928	A	C	3	47
BRCA	TCGA-D8-A1JP	ZC3HC1	SNP	Missense_Mutation	7	129680877	A	C	10	68
BRCA	TCGA-D8-A1JP	MLL3	SNP	Nonsense_Mutation	7	151960149	A	T	10	63
BRCA	TCGA-D8-A1JP	SPAG1	SNP	Silent	8	101237494	T	G	56	31
BRCA	TCGA-D8-A1JP	ZHX2	SNP	Missense_Mutation	8	123964616	A	C	7	81
BRCA	TCGA-D8-A1JP	PCM1	SNP	Silent	8	17867196	A	G	2	58
BRCA	TCGA-D8-A1JP	SORBS3	SNP	Splice_site	8	22424226	G	A	35	59
BRCA	TCGA-D8-A1JP	C9orf84	SNP	Missense_Mutation	9	114466195	A	C	6	79
BRCA	TCGA-D8-A1JP	DNAI1	SNP	Nonsense_Mutation	9	34514447	C	G	29	92
BRCA	TCGA-D8-A1JP	CNTNAP3B	SNP	Silent	9	43891639	G	A	34	57
BRCA	TCGA-D8-A1JP	GNA14	SNP	Silent	9	80043864	G	A	33	60
BRCA	TCGA-D8-A1JS	SARS	SNP	Missense_Mutation	1	109774392	A	T	12	93
BRCA	TCGA-D8-A1JS	TRIM17	SNP	Missense_Mutation	1	228596888	G	C	34	65
BRCA	TCGA-D8-A1JS	HDAC1	SNP	Splice_Site	1	32798616	A	T	7	65
BRCA	TCGA-D8-A1JS	RPUSD4	SNP	Silent	11	126075478	G	A	40	52
BRCA	TCGA-D8-A1JS	SOS2	SNP	Missense_Mutation	14	50623747	C	T	27	85
BRCA	TCGA-D8-A1JS	CCDC43	SNP	Missense_Mutation	17	42766938	C	T	22	63
BRCA	TCGA-D8-A1JS	C18orf1	SNP	Missense_Mutation	18	13438301	C	A	18	67
BRCA	TCGA-D8-A1JS	CACNA1A	SNP	Silent	19	13370458	C	T	32	63
BRCA	TCGA-D8-A1JS	MUC16	SNP	Missense_Mutation	19	9076395	C	T	28	53
BRCA	TCGA-D8-A1JS	E2F1	SNP	Missense_Mutation	20	32265318	G	A	37	74
BRCA	TCGA-D8-A1JS	ITGB2	SNP	Missense_Mutation	21	46309941	C	T	29	74
BRCA	TCGA-D8-A1JS	SH3KBP1	SNP	Missense_Mutation	23	19764522	T	C	60	51
BRCA	TCGA-D8-A1JS	KIF4A	SNP	Silent	23	69521827	G	A	41	53
BRCA	TCGA-D8-A1JS	PIK3CA	SNP	Missense_Mutation	3	178921548	G	A	40	97
BRCA	TCGA-D8-A1JS	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-D8-A1JS	THUMPD3	SNP	Missense_Mutation	3	9425945	G	A	41	99
BRCA	TCGA-D8-A1JS	INTS12	SNP	Silent	4	106604454	T	A	62	54
BRCA	TCGA-D8-A1JS	PCGF3	SNP	Missense_Mutation	4	728744	A	T	14	85
BRCA	TCGA-D8-A1JS	MRPS18C	SNP	Silent	4	84377236	C	T	23	0
BRCA	TCGA-D8-A1JS	MUC12	SNP	Missense_Mutation	7	100643116	C	T	27	34
BRCA	TCGA-D8-A1JS	LRRD1	SNP	Silent	7	91793911	T	C	59	42
BRCA	TCGA-D8-A1JS	LOXL2	SNP	Silent	8	23174487	G	A	40	37
BRCA	TCGA-D8-A1JS	TGS1	SNP	Missense_Mutation	8	56698879	C	A	32	66
BRCA	TCGA-D8-A1JT	LGR6	SNP	Missense_Mutation	1	202249911	A	T	8	85
BRCA	TCGA-D8-A1JT	RYR2	SNP	Silent	1	237608772	C	G	25	45
BRCA	TCGA-D8-A1JT	CASP4	SNP	Missense_Mutation	11	104825700	C	G	24	51
BRCA	TCGA-D8-A1JT	DHX37	SNP	Missense_Mutation	12	125448967	C	T	30	99
BRCA	TCGA-D8-A1JT	OR8S1	SNP	Missense_Mutation	12	48919779	G	A	38	67
BRCA	TCGA-D8-A1JT	TPP2	SNP	Missense_Mutation	13	103301465	A	C	2	72
BRCA	TCGA-D8-A1JT	MPHOSPH8	SNP	Missense_Mutation	13	20237220	C	T	28	96
BRCA	TCGA-D8-A1JT	ZDHHC20	SNP	Missense_Mutation	13	21955605	T	C	54	65
BRCA	TCGA-D8-A1JT	NOVA1	SNP	Silent	14	26939694	C	T	28	53
BRCA	TCGA-D8-A1JT	LINS	SNP	Silent	15	101115307	A	T	3	50
BRCA	TCGA-D8-A1JT	ZNF609	SNP	Missense_Mutation	15	64915230	G	C	40	100
BRCA	TCGA-D8-A1JT	IREB2	SNP	Splice_site	15	78775776	G	A	35	100
BRCA	TCGA-D8-A1JT	ALDOC	SNP	Splice_site	17	26901258	A	G	10	92
BRCA	TCGA-D8-A1JT	NEK8	SNP	Missense_Mutation	17	27064381	C	T	23	86
BRCA	TCGA-D8-A1JT	DCAF7	SNP	Missense_Mutation	17	61662631	G	A	37	100
BRCA	TCGA-D8-A1JT	TRPM4	INS	Frame_Shift_Ins	19	49700060	-	T	32	52
BRCA	TCGA-D8-A1JT	MUC16	SNP	Missense_Mutation	19	9085003	G	A	36	53
BRCA	TCGA-D8-A1JT	CRIM1	SNP	Missense_Mutation	2	36583699	G	C	46	55
BRCA	TCGA-D8-A1JT	TFF2	SNP	Silent	21	43767728	G	A	38	35
BRCA	TCGA-D8-A1JT	POU3F4	SNP	Missense_Mutation	23	82764246	C	T	27	97
BRCA	TCGA-D8-A1JT	KALRN	SNP	Missense_Mutation	3	124438238	G	A	40	100
BRCA	TCGA-D8-A1JT	ADAM29	SNP	Silent	4	175897708	G	A	35	33
BRCA	TCGA-D8-A1JT	FAT1	SNP	Silent	4	187629455	C	T	19	28
BRCA	TCGA-D8-A1JT	PCDHGB7	SNP	Missense_Mutation	5	140798223	C	A	26	87
BRCA	TCGA-D8-A1JT	PLK2	DEL	In_Frame_Del	5	57750566	GAT	-	33	61
BRCA	TCGA-D8-A1JT	FAM174A	SNP	Silent	5	99871633	C	G	27	53
BRCA	TCGA-D8-A1JT	RNF148	SNP	Missense_Mutation	7	122342439	C	A	24	51
BRCA	TCGA-D8-A1JT	ABCB8	SNP	Missense_Mutation	7	150732987	G	A	40	80
BRCA	TCGA-D8-A1JT	MLL3	DEL	Frame_Shift_Del	7	151843775	TT	-	56	60
BRCA	TCGA-D8-A1JT	WBSCR17	SNP	Missense_Mutation	7	71142235	G	A	43	94
BRCA	TCGA-D8-A1JT	WISP1	SNP	Missense_Mutation	8	134232962	C	T	23	83
BRCA	TCGA-D8-A1JT	VCPIP1	SNP	Missense_Mutation	8	67578573	A	C	10	57
BRCA	TCGA-D8-A1JT	PSMD5	SNP	Missense_Mutation	9	123593673	T	C	52	60
BRCA	TCGA-D8-A1JT	CNTRL	SNP	Missense_Mutation	9	123930557	G	A	41	85
BRCA	TCGA-D8-A1JT	IFT74	SNP	Missense_Mutation	9	26988692	C	T	20	85
BRCA	TCGA-D8-A1JU	HMCN1	SNP	Missense_Mutation	1	185985219	T	C	57	59
BRCA	TCGA-D8-A1JU	LAX1	SNP	Silent	1	203743056	A	T	7	46
BRCA	TCGA-D8-A1JU	SYT9	SNP	Silent	11	7324289	G	A	45	70
BRCA	TCGA-D8-A1JU	RPH3A	SNP	Missense_Mutation	12	113307785	G	A	37	80
BRCA	TCGA-D8-A1JU	MYCBP2	SNP	Silent	13	77748601	G	A	34	49
BRCA	TCGA-D8-A1JU	HS3ST4	SNP	Missense_Mutation	16	26147094	C	G	19	97
BRCA	TCGA-D8-A1JU	CLEC18C	SNP	Silent	16	70211218	G	A	40	32
BRCA	TCGA-D8-A1JU	APOB	SNP	Silent	2	21233395	C	T	21	52
BRCA	TCGA-D8-A1JU	FAM47B	SNP	Missense_Mutation	23	34962644	C	A	18	56
BRCA	TCGA-D8-A1JU	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-D8-A1JU	COPS4	SNP	Splice_Site	4	83971138	G	A	36	97
BRCA	TCGA-D8-A1JU	PCDHGA9	SNP	Silent	5	140784341	C	T	24	63
BRCA	TCGA-D8-A1JU	MAP3K1	DEL	Frame_Shift_Del	5	56155725	AG	-	3	55
BRCA	TCGA-D8-A1JU	SLC25A27	SNP	Missense_Mutation	6	46637908	A	C	6	53
BRCA	TCGA-D8-A1JU	TNFRSF11B	SNP	Missense_Mutation	8	119936777	C	T	27	68
BRCA	TCGA-D8-A1X5	BNIPL	SNP	Missense_Mutation	1	151018589	C	A	28	60
BRCA	TCGA-D8-A1X5	USH2A	INS	Frame_Shift_Ins	1	216246478	-	T	32	54
BRCA	TCGA-D8-A1X5	ZP4	SNP	Nonsense_Mutation	1	238051727	C	A	24	56
BRCA	TCGA-D8-A1X5	FMN2	SNP	Missense_Mutation	1	240256746	G	A	39	57
BRCA	TCGA-D8-A1X5	SNX19	SNP	Missense_Mutation	11	130781614	T	C	57	76
BRCA	TCGA-D8-A1X5	ANO3	SNP	Missense_Mutation	11	26620415	G	A	40	86
BRCA	TCGA-D8-A1X5	MS4A14	SNP	Missense_Mutation	11	60184021	C	T	32	54
BRCA	TCGA-D8-A1X5	DDB1	SNP	Silent	11	61094351	C	T	26	52
BRCA	TCGA-D8-A1X5	FAM160A2	SNP	Silent	11	6232928	G	A	38	40
BRCA	TCGA-D8-A1X5	DERA	SNP	Nonsense_Mutation	12	16115830	G	T	33	97
BRCA	TCGA-D8-A1X5	MYH13	SNP	Missense_Mutation	17	10216033	G	A	40	69
BRCA	TCGA-D8-A1X5	TSEN54	SNP	Silent	17	73520470	T	C	60	64
BRCA	TCGA-D8-A1X5	TP53	SNP	Missense_Mutation	17	7577568	C	A	17	93
BRCA	TCGA-D8-A1X5	TMX3	SNP	Silent	18	66354926	G	T	33	56
BRCA	TCGA-D8-A1X5	IL12RB1	SNP	Missense_Mutation	19	18188415	G	T	46	46
BRCA	TCGA-D8-A1X5	ZNF233	SNP	Silent	19	44778658	G	A	39	14
BRCA	TCGA-D8-A1X5	EN1	SNP	Missense_Mutation	2	119600587	G	A	38	85
BRCA	TCGA-D8-A1X5	MAP2	SNP	Nonsense_Mutation	2	210560612	G	T	33	70
BRCA	TCGA-D8-A1X5	APOB	SNP	Missense_Mutation	2	21234906	A	G	3	70
BRCA	TCGA-D8-A1X5	PLB1	SNP	Silent	2	28775833	C	T	18	40
BRCA	TCGA-D8-A1X5	ZFP36L2	SNP	Silent	2	43453434	G	A	39	51
BRCA	TCGA-D8-A1X5	CNNM3	SNP	Silent	2	97498311	C	T	27	54
BRCA	TCGA-D8-A1X5	LAMA5	SNP	Silent	20	60885515	C	T	23	44
BRCA	TCGA-D8-A1X5	YTHDF1	SNP	Silent	20	61834989	G	A	40	29
BRCA	TCGA-D8-A1X5	APOL6	SNP	Silent	22	36055202	G	A	47	49
BRCA	TCGA-D8-A1X5	RAB9B	SNP	Missense_Mutation	23	103080689	T	G	56	84
BRCA	TCGA-D8-A1X5	STAG2	SNP	Missense_Mutation	23	123196791	A	T	15	58
BRCA	TCGA-D8-A1X5	CDKL5	SNP	Nonsense_Mutation	23	18638042	G	T	35	89
BRCA	TCGA-D8-A1X5	ANO10	SNP	Missense_Mutation	3	43596874	C	A	25	85
BRCA	TCGA-D8-A1X5	POC1A	SNP	Missense_Mutation	3	52109949	T	G	55	72
BRCA	TCGA-D8-A1X5	FAM149A	SNP	Silent	4	187077211	C	T	31	41
BRCA	TCGA-D8-A1X5	C7	SNP	Silent	5	40959618	A	G	9	54
BRCA	TCGA-D8-A1X5	GRIK2	SNP	Silent	6	101847171	G	A	37	58
BRCA	TCGA-D8-A1X5	FYN	SNP	Silent	6	112015900	T	C	57	66
BRCA	TCGA-D8-A1X5	RNF182	SNP	Missense_Mutation	6	13977923	G	T	46	58
BRCA	TCGA-D8-A1X5	PGBD1	SNP	Missense_Mutation	6	28269126	G	A	45	78
BRCA	TCGA-D8-A1X5	PI16	SNP	Silent	6	36922584	A	G	14	45
BRCA	TCGA-D8-A1X5	DSP	SNP	Missense_Mutation	6	7582932	G	C	33	96
BRCA	TCGA-D8-A1X5	MYO6	INS	Frame_Shift_Ins	6	76551053	-	TA	49	50
BRCA	TCGA-D8-A1X5	CTTNBP2	SNP	Missense_Mutation	7	117432213	C	A	25	73
BRCA	TCGA-D8-A1X5	INMT	SNP	Missense_Mutation	7	30795418	C	A	26	55
BRCA	TCGA-D8-A1X5	RFC2	SNP	Silent	7	73651677	G	A	43	51
BRCA	TCGA-D8-A1X5	COL22A1	SNP	Missense_Mutation	8	139856380	C	T	19	63
BRCA	TCGA-D8-A1X5	ADAMTSL2	SNP	Silent	9	136405814	A	G	8	18
BRCA	TCGA-D8-A1X5	UNC13B	SNP	Silent	9	35295823	G	A	39	35
BRCA	TCGA-D8-A1X5	KIAA2026	SNP	Missense_Mutation	9	5988477	C	A	30	76
BRCA	TCGA-D8-A1X6	SPTA1	SNP	Nonsense_Mutation	1	158654984	G	A	38	53
BRCA	TCGA-D8-A1X6	VSIG8	SNP	Missense_Mutation	1	159828685	G	A	38	59
BRCA	TCGA-D8-A1X6	CCDC23	SNP	Missense_Mutation	1	43282112	T	C	63	77
BRCA	TCGA-D8-A1X6	USP24	SNP	Missense_Mutation	1	55589159	G	A	33	82
BRCA	TCGA-D8-A1X6	SEC23IP	SNP	Missense_Mutation	10	121674317	G	A	34	98
BRCA	TCGA-D8-A1X6	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-D8-A1X6	AMBRA1	SNP	Silent	11	46419045	G	A	46	57
BRCA	TCGA-D8-A1X6	HCFC2	SNP	Missense_Mutation	12	104495851	G	C	35	96
BRCA	TCGA-D8-A1X6	TBX3	SNP	Missense_Mutation	12	115118782	G	A	45	100
BRCA	TCGA-D8-A1X6	NCKAP1L	SNP	Missense_Mutation	12	54902260	C	T	31	65
BRCA	TCGA-D8-A1X6	MARS	SNP	Missense_Mutation	12	57894289	A	T	4	87
BRCA	TCGA-D8-A1X6	MTUS2	SNP	Missense_Mutation	13	29608146	G	A	40	83
BRCA	TCGA-D8-A1X6	FOXG1	SNP	Silent	14	29237628	C	T	23	63
BRCA	TCGA-D8-A1X6	PSMA3	SNP	Missense_Mutation	14	58737668	T	A	51	78
BRCA	TCGA-D8-A1X6	FAM214A	SNP	Missense_Mutation	15	52879367	G	A	35	96
BRCA	TCGA-D8-A1X6	ADAMTS7	SNP	Missense_Mutation	15	79058631	G	T	43	48
BRCA	TCGA-D8-A1X6	CTCF	SNP	Splice_site	16	67644736	A	G	4	71
BRCA	TCGA-D8-A1X6	NEUROD2	INS	Frame_Shift_Ins	17	37761947	-	G	27	58
BRCA	TCGA-D8-A1X6	FAM57A	INS	In_Frame_Ins	17	636320	-	CTC	62	42
BRCA	TCGA-D8-A1X6	DSC1	SNP	Missense_Mutation	18	28714069	C	T	23	55
BRCA	TCGA-D8-A1X6	PLD3	SNP	Silent	19	40883954	G	A	38	40
BRCA	TCGA-D8-A1X6	LIMS1	SNP	Missense_Mutation	2	109300418	G	T	33	100
BRCA	TCGA-D8-A1X6	NFE2L2	SNP	Missense_Mutation	2	178098009	G	C	38	74
BRCA	TCGA-D8-A1X6	UGT1A4	SNP	Silent	2	234680995	T	C	63	50
BRCA	TCGA-D8-A1X6	TAB3	SNP	Missense_Mutation	23	30872398	C	T	28	70
BRCA	TCGA-D8-A1X6	PCDH19	SNP	Missense_Mutation	23	99662740	G	A	38	54
BRCA	TCGA-D8-A1X6	GAP43	SNP	Missense_Mutation	3	115439676	C	T	23	86
BRCA	TCGA-D8-A1X6	C3orf55	SNP	Splice_Site	3	157289743	G	T	33	57
BRCA	TCGA-D8-A1X6	KAT2B	SNP	Missense_Mutation	3	20167590	G	A	39	99
BRCA	TCGA-D8-A1X6	SLC26A6	SNP	Missense_Mutation	3	48668568	A	C	6	57
BRCA	TCGA-D8-A1X6	P4HTM	SNP	Missense_Mutation	3	49044240	T	C	62	60
BRCA	TCGA-D8-A1X6	FLNB	SNP	Missense_Mutation	3	58080583	A	G	8	61
BRCA	TCGA-D8-A1X6	ATXN7	SNP	Missense_Mutation	3	63981414	G	C	46	79
BRCA	TCGA-D8-A1X6	EXOSC9	SNP	Missense_Mutation	4	122735146	T	C	52	62
BRCA	TCGA-D8-A1X6	MAP3K1	INS	Frame_Shift_Ins	5	56160679	-	A	61	83
BRCA	TCGA-D8-A1X6	ACTL6B	SNP	Missense_Mutation	7	100244424	C	G	22	64
BRCA	TCGA-D8-A1X6	MLL3	INS	Frame_Shift_Ins	7	151841851	-	CC	62	62
BRCA	TCGA-D8-A1X6	SPAG11B	SNP	Silent	8	7320248	C	T	27	45
BRCA	TCGA-D8-A1X6	BRD3	SNP	Missense_Mutation	9	136918532	G	A	43	97
BRCA	TCGA-D8-A1X6	PNPLA7	SNP	Silent	9	140395220	G	A	39	11
BRCA	TCGA-D8-A1X6	KDM4C	SNP	Splice_site	9	6805599	G	C	44	100
BRCA	TCGA-D8-A1X7	AADACL4	SNP	Missense_Mutation	1	12711145	A	T	9	48
BRCA	TCGA-D8-A1X7	HRNR	SNP	Silent	1	152189038	A	G	8	49
BRCA	TCGA-D8-A1X7	TMCO4	SNP	Missense_Mutation	1	20027295	C	T	18	86
BRCA	TCGA-D8-A1X7	PCNXL2	SNP	Missense_Mutation	1	233344320	T	C	49	77
BRCA	TCGA-D8-A1X7	MYBPC1	SNP	Silent	12	102053566	C	T	19	50
BRCA	TCGA-D8-A1X7	FBXL14	SNP	Missense_Mutation	12	1702880	G	A	41	80
BRCA	TCGA-D8-A1X7	CILP	SNP	Nonsense_Mutation	15	65495782	C	A	29	56
BRCA	TCGA-D8-A1X7	ZNF286B	SNP	Missense_Mutation	17	18565506	G	C	43	74
BRCA	TCGA-D8-A1X7	MAST1	SNP	Missense_Mutation	19	12954345	C	T	27	85
BRCA	TCGA-D8-A1X7	KIAA1683	SNP	Missense_Mutation	19	18375974	G	T	38	46
BRCA	TCGA-D8-A1X7	FCGBP	SNP	Missense_Mutation	19	40392802	C	T	26	58
BRCA	TCGA-D8-A1X7	SLC9A2	SNP	Missense_Mutation	2	103311569	A	G	10	84
BRCA	TCGA-D8-A1X7	EPC2	SNP	Missense_Mutation	2	149501311	G	A	33	96
BRCA	TCGA-D8-A1X7	STK11IP	SNP	Missense_Mutation	2	220476737	A	T	11	61
BRCA	TCGA-D8-A1X7	OTOF	SNP	Missense_Mutation	2	26707384	G	A	40	80
BRCA	TCGA-D8-A1X7	USP34	SNP	Silent	2	61468772	G	A	34	88
BRCA	TCGA-D8-A1X7	SALL4	SNP	Silent	20	50408674	G	A	39	42
BRCA	TCGA-D8-A1X7	PNMA5	SNP	Silent	23	152159057	G	A	33	33
BRCA	TCGA-D8-A1X7	USP9X	SNP	Nonsense_Mutation	23	41025387	C	T	31	78
BRCA	TCGA-D8-A1X7	ANKRD32	SNP	Missense_Mutation	5	94005921	A	C	6	62
BRCA	TCGA-D8-A1X7	FZD9	SNP	Missense_Mutation	7	72849875	A	T	1	89
BRCA	TCGA-D8-A1X7	GLI4	SNP	Missense_Mutation	8	144358528	C	G	25	69
BRCA	TCGA-D8-A1X7	IKBKAP	SNP	Missense_Mutation	9	111673326	G	C	33	67
BRCA	TCGA-D8-A1X7	SLC27A4	SNP	Missense_Mutation	9	131115797	G	A	42	97
BRCA	TCGA-D8-A1X7	DOCK8	SNP	Missense_Mutation	9	317062	G	A	40	89
BRCA	TCGA-D8-A1X7	FOXD4L3	SNP	Missense_Mutation	9	70917883	G	A	34	53
BRCA	TCGA-D8-A1X8	MST1P9	DEL	Frame_Shift_Del	1	17086940	AC	-	14	49
BRCA	TCGA-D8-A1X8	NLRP3	SNP	Missense_Mutation	1	247582326	C	T	27	57
BRCA	TCGA-D8-A1X8	RRP12	SNP	Silent	10	99132555	C	T	29	68
BRCA	TCGA-D8-A1X8	MUC2	INS	In_Frame_Ins	11	1092619	-	CAA	30	33
BRCA	TCGA-D8-A1X8	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-D8-A1X8	SYNE2	SNP	Missense_Mutation	14	64635628	A	T	4	50
BRCA	TCGA-D8-A1X8	SEPT12	SNP	Silent	16	4829725	G	A	41	51
BRCA	TCGA-D8-A1X8	CDH1	DEL	Frame_Shift_Del	16	68844223	GTCATGGAAG	-	48	80
BRCA	TCGA-D8-A1X8	PAFAH1B1	SNP	Nonsense_Mutation	17	2573487	C	T	19	70
BRCA	TCGA-D8-A1X8	MTMR4	SNP	Silent	17	56582889	G	T	41	68
BRCA	TCGA-D8-A1X8	SGSH	SNP	Missense_Mutation	17	78185893	C	A	28	96
BRCA	TCGA-D8-A1X8	APBA3	SNP	Silent	19	3753892	G	A	33	61
BRCA	TCGA-D8-A1X8	SHANK1	SNP	Silent	19	51165693	G	A	39	55
BRCA	TCGA-D8-A1X8	KLK13	SNP	Missense_Mutation	19	51563756	C	T	23	54
BRCA	TCGA-D8-A1X8	SYT5	SNP	Missense_Mutation	19	55687114	G	A	40	73
BRCA	TCGA-D8-A1X8	THSD7B	SNP	Silent	2	138033556	G	A	39	53
BRCA	TCGA-D8-A1X8	C2orf78	SNP	Missense_Mutation	2	74043504	G	T	45	59
BRCA	TCGA-D8-A1X8	TET3	DEL	In_Frame_Del	2	74274856	AAAGCCCATTCAGATCAA	-	9	49
BRCA	TCGA-D8-A1X8	NCOA6	SNP	Missense_Mutation	20	33328692	T	C	60	53
BRCA	TCGA-D8-A1X8	CT47B1	DEL	In_Frame_Del	23	120008797	TCCTCTGTGGCCTCCTCTGTGAGCTTC	-	62	51
BRCA	TCGA-D8-A1X8	FAM47C	SNP	Missense_Mutation	23	37027408	G	C	41	69
BRCA	TCGA-D8-A1X8	ZMYM3	SNP	Splice_site	23	70464640	C	T	24	63
BRCA	TCGA-D8-A1X8	SETD2	DEL	Frame_Shift_Del	3	47098494	CGGCA	-	23	39
BRCA	TCGA-D8-A1X8	SETD2	DEL	Frame_Shift_Del	3	47098502	GCAAGACA	-	42	72
BRCA	TCGA-D8-A1X8	PCDHGB4	SNP	Missense_Mutation	5	140769310	G	A	38	70
BRCA	TCGA-D8-A1X8	PDZD2	SNP	Missense_Mutation	5	32088636	A	C	3	41
BRCA	TCGA-D8-A1X8	PLK2	SNP	Missense_Mutation	5	57751415	C	G	23	98
BRCA	TCGA-D8-A1X8	THBS4	SNP	Silent	5	79374937	C	T	22	42
BRCA	TCGA-D8-A1X8	CAST	SNP	Silent	5	96100942	C	T	31	19
BRCA	TCGA-D8-A1X8	SERPINE1	SNP	Silent	7	100771746	G	T	46	41
BRCA	TCGA-D8-A1X8	ABCA13	SNP	Missense_Mutation	7	48450174	G	A	38	58
BRCA	TCGA-D8-A1X8	ZNF483	SNP	Splice_Site	9	114293154	G	C	33	69
BRCA	TCGA-D8-A1X9	MTMR11	SNP	Silent	1	149903191	G	T	35	56
BRCA	TCGA-D8-A1X9	APH1A	SNP	Silent	1	150240461	G	T	39	48
BRCA	TCGA-D8-A1X9	DENND4B	SNP	Missense_Mutation	1	153915527	G	T	35	73
BRCA	TCGA-D8-A1X9	CCT3	SNP	Splice_Site	1	156287325	A	C	4	90
BRCA	TCGA-D8-A1X9	OR10T2	SNP	Silent	1	158368836	G	A	34	50
BRCA	TCGA-D8-A1X9	SPTA1	SNP	Missense_Mutation	1	158639531	C	A	29	90
BRCA	TCGA-D8-A1X9	FMO1	SNP	Silent	1	171251333	C	A	26	56
BRCA	TCGA-D8-A1X9	CHRM3	SNP	Silent	1	240072278	C	A	29	63
BRCA	TCGA-D8-A1X9	SDCCAG8	SNP	Missense_Mutation	1	243419510	A	G	11	72
BRCA	TCGA-D8-A1X9	RERE	SNP	Missense_Mutation	1	8421833	G	C	48	99
BRCA	TCGA-D8-A1X9	RBM20	SNP	Silent	10	112581284	A	C	15	47
BRCA	TCGA-D8-A1X9	PITRM1	SNP	Missense_Mutation	10	3181120	C	T	25	59
BRCA	TCGA-D8-A1X9	VSTM4	DEL	In_Frame_Del	10	50315947	TGGGAGACG	-	55	89
BRCA	TCGA-D8-A1X9	P4HA1	SNP	Missense_Mutation	10	74769591	C	A	17	96
BRCA	TCGA-D8-A1X9	TIMM8B	SNP	Missense_Mutation	11	111957438	G	T	34	57
BRCA	TCGA-D8-A1X9	SOX6	SNP	Missense_Mutation	11	16007910	C	T	26	100
BRCA	TCGA-D8-A1X9	ZNF408	SNP	Missense_Mutation	11	46726161	A	T	14	50
BRCA	TCGA-D8-A1X9	OR52B2	SNP	Missense_Mutation	11	6190716	G	T	33	67
BRCA	TCGA-D8-A1X9	ATL3	SNP	Missense_Mutation	11	63420031	A	T	8	88
BRCA	TCGA-D8-A1X9	MAP1LC3B2	SNP	Missense_Mutation	12	117014080	G	T	47	84
BRCA	TCGA-D8-A1X9	FAM186A	SNP	Missense_Mutation	12	50745684	G	C	42	51
BRCA	TCGA-D8-A1X9	AHNAK2	SNP	Missense_Mutation	14	105412985	G	A	43	65
BRCA	TCGA-D8-A1X9	CTAGE5	SNP	Silent	14	39818099	T	A	54	51
BRCA	TCGA-D8-A1X9	FOS	SNP	Silent	14	75748073	C	T	25	100
BRCA	TCGA-D8-A1X9	FSD2	SNP	Missense_Mutation	15	83451590	G	T	48	67
BRCA	TCGA-D8-A1X9	SV2B	SNP	Silent	15	91769862	G	T	43	44
BRCA	TCGA-D8-A1X9	HSD3B7	SNP	Silent	16	30997512	G	A	35	51
BRCA	TCGA-D8-A1X9	BCKDK	SNP	Missense_Mutation	16	31121625	G	A	45	95
BRCA	TCGA-D8-A1X9	PDPR	SNP	Missense_Mutation	16	70162893	C	G	22	78
BRCA	TCGA-D8-A1X9	CTU2	SNP	Splice_site	16	88773618	G	T	35	59
BRCA	TCGA-D8-A1X9	LRRC37B	SNP	Missense_Mutation	17	30349516	C	T	28	51
BRCA	TCGA-D8-A1X9	PITPNC1	SNP	Nonsense_Mutation	17	65548392	A	T	15	54
BRCA	TCGA-D8-A1X9	KIF19	SNP	Missense_Mutation	17	72338053	C	A	17	64
BRCA	TCGA-D8-A1X9	GRIN2C	SNP	Missense_Mutation	17	72842316	T	G	59	89
BRCA	TCGA-D8-A1X9	EIF4A3	SNP	Missense_Mutation	17	78113839	T	A	51	86
BRCA	TCGA-D8-A1X9	SLC38A10	SNP	Missense_Mutation	17	79220110	C	T	26	51
BRCA	TCGA-D8-A1X9	TRAPPC8	SNP	Missense_Mutation	18	29488954	A	C	13	49
BRCA	TCGA-D8-A1X9	SMAD4	SNP	Nonsense_Mutation	18	48604754	G	T	45	100
BRCA	TCGA-D8-A1X9	OR7C1	SNP	Missense_Mutation	19	14910104	G	T	44	61
BRCA	TCGA-D8-A1X9	COMP	SNP	Missense_Mutation	19	18897364	G	A	43	89
BRCA	TCGA-D8-A1X9	RYR1	SNP	Missense_Mutation	19	39038978	T	A	54	88
BRCA	TCGA-D8-A1X9	DMRTC2	SNP	Missense_Mutation	19	42355733	G	T	42	77
BRCA	TCGA-D8-A1X9	LCT	SNP	Missense_Mutation	2	136579592	T	A	64	64
BRCA	TCGA-D8-A1X9	PHOSPHO2	SNP	Missense_Mutation	2	170557587	C	T	19	46
BRCA	TCGA-D8-A1X9	KIDINS220	SNP	Missense_Mutation	2	8874805	A	G	7	91
BRCA	TCGA-D8-A1X9	CNGA3	SNP	Silent	2	99013589	C	T	19	25
BRCA	TCGA-D8-A1X9	TSHZ2	SNP	Missense_Mutation	20	51870893	A	T	8	92
BRCA	TCGA-D8-A1X9	DGCR8	SNP	Missense_Mutation	22	20074049	T	G	55	62
BRCA	TCGA-D8-A1X9	PKDREJ	SNP	Silent	22	46657363	G	T	47	50
BRCA	TCGA-D8-A1X9	BTK	SNP	Missense_Mutation	23	100629586	T	C	62	82
BRCA	TCGA-D8-A1X9	WWC3	SNP	Missense_Mutation	23	10092351	G	A	39	69
BRCA	TCGA-D8-A1X9	F8	SNP	Missense_Mutation	23	154133268	A	C	15	84
BRCA	TCGA-D8-A1X9	NHS	SNP	Missense_Mutation	23	17743644	C	A	25	70
BRCA	TCGA-D8-A1X9	PAGE1	SNP	Missense_Mutation	23	49459370	C	T	22	50
BRCA	TCGA-D8-A1X9	ESYT3	SNP	Silent	3	138186958	G	A	45	64
BRCA	TCGA-D8-A1X9	TRIM42	SNP	Silent	3	140401895	C	G	24	52
BRCA	TCGA-D8-A1X9	TFDP2	SNP	Missense_Mutation	3	141678678	C	G	29	100
BRCA	TCGA-D8-A1X9	CCDC39	SNP	Missense_Mutation	3	180334625	C	A	20	79
BRCA	TCGA-D8-A1X9	MLH1	SNP	Missense_Mutation	3	37091999	C	A	21	69
BRCA	TCGA-D8-A1X9	MYRIP	SNP	Missense_Mutation	3	40192594	A	C	5	86
BRCA	TCGA-D8-A1X9	ZBTB47	SNP	Missense_Mutation	3	42699991	G	C	33	75
BRCA	TCGA-D8-A1X9	ITIH1	SNP	Missense_Mutation	3	52821620	C	A	22	52
BRCA	TCGA-D8-A1X9	TKT	SNP	Missense_Mutation	3	53269083	A	T	15	92
BRCA	TCGA-D8-A1X9	FOXP1	SNP	Splice_Site	3	71026978	C	A	18	100
BRCA	TCGA-D8-A1X9	UGT2B4	SNP	Nonsense_Mutation	4	70346546	C	A	29	84
BRCA	TCGA-D8-A1X9	DSPP	SNP	Silent	4	88535974	T	C	49	40
BRCA	TCGA-D8-A1X9	FAM13B	SNP	Missense_Mutation	5	137289986	C	G	29	91
BRCA	TCGA-D8-A1X9	ANXA6	SNP	Missense_Mutation	5	150508981	T	C	57	61
BRCA	TCGA-D8-A1X9	C5orf60	DEL	Splice_site	5	179070490	ATCTGGAAAGCAGGAG	-	4	55
BRCA	TCGA-D8-A1X9	HACE1	SNP	Splice_Site	6	105224704	C	A	24	97
BRCA	TCGA-D8-A1X9	TUBE1	SNP	Missense_Mutation	6	112395935	C	A	32	99
BRCA	TCGA-D8-A1X9	TREML4	SNP	Silent	6	41196189	C	A	24	70
BRCA	TCGA-D8-A1X9	COQ3	SNP	Missense_Mutation	6	99842022	C	A	22	47
BRCA	TCGA-D8-A1X9	NRCAM	SNP	Splice_site	7	107834872	C	T	18	99
BRCA	TCGA-D8-A1X9	HIBADH	SNP	Missense_Mutation	7	27578011	A	G	7	81
BRCA	TCGA-D8-A1X9	CHN2	SNP	Missense_Mutation	7	29440430	A	G	6	46
BRCA	TCGA-D8-A1X9	GLI3	SNP	Nonsense_Mutation	7	42079679	G	T	45	100
BRCA	TCGA-D8-A1X9	OGDH	SNP	Missense_Mutation	7	44735647	G	C	33	69
BRCA	TCGA-D8-A1X9	COL1A2	SNP	Silent	7	94057753	C	T	19	51
BRCA	TCGA-D8-A1X9	PPP2R4	DEL	Splice_site	9	131898874	GGTACTAGAGCG	-	35	96
BRCA	TCGA-D8-A1X9	IFNA6	DEL	Frame_Shift_Del	9	21350620	GTTGAAGGTCT	-	44	56
BRCA	TCGA-D8-A1X9	NFX1	SNP	Silent	9	33351740	A	C	6	45
BRCA	TCGA-D8-A1X9	OR13J1	SNP	Missense_Mutation	9	35870156	C	A	25	78
BRCA	TCGA-D8-A1X9	PGM5	SNP	Missense_Mutation	9	71080089	G	A	40	83
BRCA	TCGA-D8-A1XA	RPL5	DEL	Frame_Shift_Del	1	93299194	ACAA	-	10	73
BRCA	TCGA-D8-A1XA	CYP2E1	SNP	Silent	10	135340911	C	T	31	35
BRCA	TCGA-D8-A1XA	AKR1C2	SNP	Missense_Mutation	10	5042749	G	A	33	62
BRCA	TCGA-D8-A1XA	C10orf53	SNP	Splice_site	10	50916662	G	T	45	43
BRCA	TCGA-D8-A1XA	PRDM10	SNP	Missense_Mutation	11	129827675	G	A	40	85
BRCA	TCGA-D8-A1XA	IFITM2	SNP	Missense_Mutation	11	308323	T	C	59	58
BRCA	TCGA-D8-A1XA	OR51I1	SNP	Missense_Mutation	11	5462323	T	C	60	48
BRCA	TCGA-D8-A1XA	OR5D13	SNP	Missense_Mutation	11	55541596	T	G	51	57
BRCA	TCGA-D8-A1XA	TMEM138	SNP	Silent	11	61135442	T	C	62	38
BRCA	TCGA-D8-A1XA	ATF1	SNP	Missense_Mutation	12	51203349	A	G	16	77
BRCA	TCGA-D8-A1XA	ZFP36L1	INS	In_Frame_Ins	14	69256738	-	GAT	47	97
BRCA	TCGA-D8-A1XA	ATP2A1	SNP	Missense_Mutation	16	28898983	C	A	23	74
BRCA	TCGA-D8-A1XA	OR3A2	SNP	Missense_Mutation	17	3181841	T	G	58	88
BRCA	TCGA-D8-A1XA	AARSD1	SNP	Missense_Mutation	17	41123700	G	A	33	69
BRCA	TCGA-D8-A1XA	TP53	SNP	Nonsense_Mutation	17	7577022	G	A	38	61
BRCA	TCGA-D8-A1XA	ZNF317	SNP	Silent	19	9272088	C	T	23	17
BRCA	TCGA-D8-A1XA	MAP4K3	SNP	Silent	2	39519955	T	C	59	53
BRCA	TCGA-D8-A1XA	ATF4	DEL	Frame_Shift_Del	22	39918079	TTCC	-	52	59
BRCA	TCGA-D8-A1XA	BRD1	SNP	Silent	22	50217426	G	A	39	50
BRCA	TCGA-D8-A1XA	KIAA2022	SNP	Missense_Mutation	23	73960664	C	T	19	65
BRCA	TCGA-D8-A1XA	SHROOM2	SNP	Missense_Mutation	23	9841726	A	G	3	53
BRCA	TCGA-D8-A1XA	SLC51A	SNP	Silent	3	195956806	T	G	54	52
BRCA	TCGA-D8-A1XA	IFRD2	SNP	Missense_Mutation	3	50327172	C	A	22	58
BRCA	TCGA-D8-A1XA	CENPC1	SNP	Missense_Mutation	4	68374632	C	T	24	54
BRCA	TCGA-D8-A1XA	FNIP1	DEL	Frame_Shift_Del	5	131080327	CAGTCTTGATATACAAT	-	17	97
BRCA	TCGA-D8-A1XA	MAP3K1	INS	Frame_Shift_Ins	5	56183240	-	T	20	71
BRCA	TCGA-D8-A1XA	TRRAP	DEL	Frame_Shift_Del	7	98581879	TATTCCAACTGTTCCTATCGTGGATTGCT	-	53	47
BRCA	TCGA-D8-A1XA	DLGAP2	SNP	Nonsense_Mutation	8	1645363	G	A	43	98
BRCA	TCGA-D8-A1XA	CRISPLD1	DEL	Frame_Shift_Del	8	75932129	CA	-	29	68
BRCA	TCGA-D8-A1XB	PRRC2C	SNP	Missense_Mutation	1	171549015	G	A	35	66
BRCA	TCGA-D8-A1XB	C1orf222	SNP	Missense_Mutation	1	1888142	C	T	19	26
BRCA	TCGA-D8-A1XB	OR13G1	SNP	Missense_Mutation	1	247835571	C	T	27	59
BRCA	TCGA-D8-A1XB	KRTAP5-1	SNP	Missense_Mutation	11	1605996	A	C	6	46
BRCA	TCGA-D8-A1XB	PPM1H	SNP	Missense_Mutation	12	63061084	T	C	49	74
BRCA	TCGA-D8-A1XB	CLEC4A	SNP	Missense_Mutation	12	8288271	G	A	36	71
BRCA	TCGA-D8-A1XB	C14orf129	SNP	Missense_Mutation	14	96851896	T	A	64	44
BRCA	TCGA-D8-A1XB	INO80	SNP	Missense_Mutation	15	41372096	G	A	45	96
BRCA	TCGA-D8-A1XB	MEIOB	SNP	Silent	16	1889430	A	G	6	51
BRCA	TCGA-D8-A1XB	MFSD11	SNP	Missense_Mutation	17	74734448	C	G	32	65
BRCA	TCGA-D8-A1XB	C19orf26	SNP	Missense_Mutation	19	1235064	G	A	39	54
BRCA	TCGA-D8-A1XB	SLC25A42	SNP	Silent	19	19218751	G	T	42	39
BRCA	TCGA-D8-A1XB	ZNF461	SNP	Missense_Mutation	19	37130642	C	T	20	48
BRCA	TCGA-D8-A1XB	ZFP112	SNP	Splice_site	19	44831587	C	A	29	55
BRCA	TCGA-D8-A1XB	PKP4	SNP	Missense_Mutation	2	159481627	T	G	54	89
BRCA	TCGA-D8-A1XB	OST4	DEL	In_Frame_Del	2	27294263	ACG	-	2	88
BRCA	TCGA-D8-A1XB	CLDN14	SNP	Missense_Mutation	21	37833546	G	C	43	100
BRCA	TCGA-D8-A1XB	C22orf25	SNP	Missense_Mutation	22	20024370	G	A	38	74
BRCA	TCGA-D8-A1XB	SLC6A14	SNP	Missense_Mutation	23	115585541	T	C	51	67
BRCA	TCGA-D8-A1XB	GRIPAP1	SNP	Missense_Mutation	23	48839811	C	T	21	49
BRCA	TCGA-D8-A1XB	PIK3CA	DEL	In_Frame_Del	3	178916926	GTAGGCAACCGT	-	36	97
BRCA	TCGA-D8-A1XB	DCLK3	SNP	Silent	3	36759619	G	A	41	53
BRCA	TCGA-D8-A1XB	CCDC13	SNP	Silent	3	42777253	C	T	28	55
BRCA	TCGA-D8-A1XB	GLRA3	SNP	Missense_Mutation	4	175649752	A	T	8	90
BRCA	TCGA-D8-A1XB	ANKRD37	SNP	Missense_Mutation	4	186318102	G	A	37	71
BRCA	TCGA-D8-A1XB	MAP3K1	SNP	Splice_site	5	56177099	G	T	35	75
BRCA	TCGA-D8-A1XB	MAP3K1	SNP	Missense_Mutation	5	56179396	T	A	57	87
BRCA	TCGA-D8-A1XB	C6orf170	SNP	Missense_Mutation	6	121526246	C	T	29	90
BRCA	TCGA-D8-A1XB	WTAP	SNP	Missense_Mutation	6	160174524	G	C	37	100
BRCA	TCGA-D8-A1XC	TOR3A	SNP	Missense_Mutation	1	179063271	C	T	28	74
BRCA	TCGA-D8-A1XC	BCO2	SNP	Nonsense_Mutation	11	112064318	C	T	23	64
BRCA	TCGA-D8-A1XC	OR4D6	SNP	Silent	11	59225033	C	A	32	54
BRCA	TCGA-D8-A1XC	DUSP16	SNP	Nonsense_Mutation	12	12630318	G	A	38	51
BRCA	TCGA-D8-A1XC	AMHR2	SNP	Missense_Mutation	12	53825208	G	A	42	56
BRCA	TCGA-D8-A1XC	FOXA1	DEL	Frame_Shift_Del	14	38060755	GCTGCTCC	-	46	94
BRCA	TCGA-D8-A1XC	POMT2	SNP	Missense_Mutation	14	77767530	A	G	13	92
BRCA	TCGA-D8-A1XC	ATXN2L	SNP	Missense_Mutation	16	28844531	C	T	31	54
BRCA	TCGA-D8-A1XC	CLEC18B	SNP	Missense_Mutation	16	74446108	C	T	23	52
BRCA	TCGA-D8-A1XC	TLK2	SNP	Missense_Mutation	17	60678053	A	G	10	90
BRCA	TCGA-D8-A1XC	LOXHD1	SNP	Silent	18	44057735	G	A	33	58
BRCA	TCGA-D8-A1XC	TSHZ3	SNP	Missense_Mutation	19	31768399	G	A	39	89
BRCA	TCGA-D8-A1XC	MUC16	SNP	Missense_Mutation	19	9066614	C	A	20	49
BRCA	TCGA-D8-A1XC	SCN3A	SNP	Missense_Mutation	2	166012326	G	C	41	51
BRCA	TCGA-D8-A1XC	CCDC141	SNP	Missense_Mutation	2	179742731	G	A	48	61
BRCA	TCGA-D8-A1XC	CRNKL1	SNP	Missense_Mutation	20	20036596	T	A	64	49
BRCA	TCGA-D8-A1XC	COMMD7	SNP	Silent	20	31315779	G	A	33	47
BRCA	TCGA-D8-A1XC	C20orf195	SNP	Missense_Mutation	20	62187465	G	A	39	50
BRCA	TCGA-D8-A1XC	TAF1	SNP	Missense_Mutation	23	70627446	G	A	39	80
BRCA	TCGA-D8-A1XC	PHLDB2	SNP	Missense_Mutation	3	111693313	G	T	33	100
BRCA	TCGA-D8-A1XC	SI	SNP	Missense_Mutation	3	164755728	T	C	49	80
BRCA	TCGA-D8-A1XC	PCDH10	SNP	Silent	4	134073305	C	T	21	52
BRCA	TCGA-D8-A1XC	RHOH	SNP	Silent	4	40245027	C	T	27	48
BRCA	TCGA-D8-A1XC	HMMR	SNP	Splice_Site	5	162891728	G	A	33	75
BRCA	TCGA-D8-A1XC	MRPS30	SNP	Splice_Site	5	44813385	G	A	44	100
BRCA	TCGA-D8-A1XC	C5orf49	SNP	Missense_Mutation	5	7835571	C	T	27	48
BRCA	TCGA-D8-A1XC	PEX7	SNP	Missense_Mutation	6	137147511	T	G	51	51
BRCA	TCGA-D8-A1XC	SP4	SNP	Missense_Mutation	7	21516732	C	A	25	83
BRCA	TCGA-D8-A1XC	PDE1C	SNP	Missense_Mutation	7	31912927	T	G	49	90
BRCA	TCGA-D8-A1XC	CDK13	SNP	Missense_Mutation	7	40027851	C	T	28	70
BRCA	TCGA-D8-A1XF	HRNR	SNP	Missense_Mutation	1	152192762	C	T	31	51
BRCA	TCGA-D8-A1XF	FLG	SNP	Missense_Mutation	1	152278000	C	A	24	54
BRCA	TCGA-D8-A1XF	NLRP3	SNP	Missense_Mutation	1	247587581	G	T	46	62
BRCA	TCGA-D8-A1XF	MACF1	SNP	Missense_Mutation	1	39908479	G	A	46	88
BRCA	TCGA-D8-A1XF	PPRC1	SNP	Missense_Mutation	10	103897671	T	A	55	66
BRCA	TCGA-D8-A1XF	RUFY2	SNP	Silent	10	70156614	C	T	19	37
BRCA	TCGA-D8-A1XF	ZNF202	SNP	Silent	11	123598959	C	T	19	41
BRCA	TCGA-D8-A1XF	SPTBN2	SNP	Missense_Mutation	11	66457401	C	T	27	97
BRCA	TCGA-D8-A1XF	OSBPL8	SNP	Missense_Mutation	12	76791544	C	T	19	88
BRCA	TCGA-D8-A1XF	CUL4A	SNP	Missense_Mutation	13	113898800	G	C	33	53
BRCA	TCGA-D8-A1XF	WDR72	SNP	Missense_Mutation	15	53957929	C	T	31	54
BRCA	TCGA-D8-A1XF	THSD4	SNP	Nonsense_Mutation	15	72050319	G	T	41	95
BRCA	TCGA-D8-A1XF	MVP	SNP	Silent	16	29851675	C	A	22	70
BRCA	TCGA-D8-A1XF	CNGB1	SNP	Silent	16	57921789	C	T	23	27
BRCA	TCGA-D8-A1XF	TCF4	SNP	Silent	18	52928751	G	A	38	57
BRCA	TCGA-D8-A1XF	ARHGAP33	SNP	Missense_Mutation	19	36269498	G	T	46	65
BRCA	TCGA-D8-A1XF	RYR1	DEL	Splice_site	19	39077216	GGTAAGG	-	35	95
BRCA	TCGA-D8-A1XF	CYP2A13	SNP	Silent	19	41596463	G	A	39	46
BRCA	TCGA-D8-A1XF	MED25	SNP	Missense_Mutation	19	50333407	G	A	38	44
BRCA	TCGA-D8-A1XF	KLK14	SNP	Missense_Mutation	19	51584934	T	C	62	53
BRCA	TCGA-D8-A1XF	GALNT5	SNP	Silent	2	158156081	A	G	12	55
BRCA	TCGA-D8-A1XF	ABI2	SNP	Missense_Mutation	2	204291989	G	A	37	100
BRCA	TCGA-D8-A1XF	ZDBF2	SNP	Silent	2	207175936	G	A	37	48
BRCA	TCGA-D8-A1XF	SLC19A3	SNP	Missense_Mutation	2	228564073	C	T	31	100
BRCA	TCGA-D8-A1XF	CD8A	SNP	Missense_Mutation	2	87017658	T	C	55	39
BRCA	TCGA-D8-A1XF	SLC13A3	SNP	Missense_Mutation	20	45228668	G	C	38	68
BRCA	TCGA-D8-A1XF	RSPO4	DEL	Splice_site	20	948781	ACTGCCCACAAGA	-	6	53
BRCA	TCGA-D8-A1XF	AP1B1	SNP	Silent	22	29727809	C	T	23	36
BRCA	TCGA-D8-A1XF	KCNJ4	SNP	Silent	22	38823442	G	A	38	44
BRCA	TCGA-D8-A1XF	MTM1	SNP	Missense_Mutation	23	149783132	G	T	36	80
BRCA	TCGA-D8-A1XF	C3orf20	SNP	Silent	3	14769950	G	T	48	47
BRCA	TCGA-D8-A1XF	CCDC13	SNP	Silent	3	42754739	C	T	21	50
BRCA	TCGA-D8-A1XF	DOCK3	SNP	Missense_Mutation	3	51263178	C	A	28	98
BRCA	TCGA-D8-A1XF	TRAM1L1	SNP	Silent	4	118005644	C	A	19	23
BRCA	TCGA-D8-A1XF	APC	SNP	Silent	5	112173496	G	A	37	51
BRCA	TCGA-D8-A1XF	FAM105A	SNP	Missense_Mutation	5	14601486	G	T	45	85
BRCA	TCGA-D8-A1XF	RAD1	SNP	Missense_Mutation	5	34909405	T	C	50	89
BRCA	TCGA-D8-A1XF	KIAA0319	SNP	Missense_Mutation	6	24581158	C	A	28	54
BRCA	TCGA-D8-A1XF	DLC1	SNP	Missense_Mutation	8	13356703	C	T	26	52
BRCA	TCGA-D8-A1XF	TMEM70	INS	Frame_Shift_Ins	8	74888632	-	GT	27	55
BRCA	TCGA-D8-A1XF	ZFHX4	SNP	Missense_Mutation	8	77764795	A	G	5	76
BRCA	TCGA-D8-A1XG	ADAM12	SNP	Splice_site	10	127734625	C	T	22	100
BRCA	TCGA-D8-A1XG	ELP4	SNP	Missense_Mutation	11	31653874	G	C	36	49
BRCA	TCGA-D8-A1XG	SLC22A10	SNP	Missense_Mutation	11	63071594	C	T	27	57
BRCA	TCGA-D8-A1XG	PPP1CA	SNP	Silent	11	67166579	T	A	55	44
BRCA	TCGA-D8-A1XG	NPAS3	SNP	Silent	14	34269262	G	A	39	50
BRCA	TCGA-D8-A1XG	FOXA1	DEL	Frame_Shift_Del	14	38061884	GTTCATG	-	36	64
BRCA	TCGA-D8-A1XG	LTBP2	SNP	Missense_Mutation	14	74995708	C	T	26	94
BRCA	TCGA-D8-A1XG	SQRDL	SNP	Missense_Mutation	15	45954163	A	C	14	87
BRCA	TCGA-D8-A1XG	IL4R	SNP	Missense_Mutation	16	27353480	G	A	37	59
BRCA	TCGA-D8-A1XG	C3	SNP	Missense_Mutation	19	6711025	C	A	24	32
BRCA	TCGA-D8-A1XG	PXDN	SNP	Missense_Mutation	2	1670036	G	T	38	94
BRCA	TCGA-D8-A1XG	HSPD1	DEL	Frame_Shift_Del	2	198351864	TCTGCTGTAG	-	62	89
BRCA	TCGA-D8-A1XG	KANSL3	SNP	Silent	2	97302834	T	C	55	48
BRCA	TCGA-D8-A1XG	RBL1	SNP	Silent	20	35689643	C	T	29	61
BRCA	TCGA-D8-A1XG	ATP2B2	SNP	Silent	3	10370591	G	A	37	63
BRCA	TCGA-D8-A1XG	PHLDB2	SNP	Missense_Mutation	3	111632438	G	T	41	52
BRCA	TCGA-D8-A1XG	SEMA5B	SNP	Missense_Mutation	3	122645475	G	T	41	62
BRCA	TCGA-D8-A1XG	C3orf79	SNP	Missense_Mutation	3	153203844	A	C	6	52
BRCA	TCGA-D8-A1XG	SETD7	SNP	Missense_Mutation	4	140454468	T	A	59	93
BRCA	TCGA-D8-A1XG	CLDN22	SNP	Missense_Mutation	4	184240759	G	T	48	69
BRCA	TCGA-D8-A1XG	FBN2	SNP	Silent	5	127597566	C	T	26	59
BRCA	TCGA-D8-A1XG	AFAP1L1	SNP	Missense_Mutation	5	148709274	C	T	26	98
BRCA	TCGA-D8-A1XG	MCTP1	SNP	Missense_Mutation	5	94619756	C	A	24	54
BRCA	TCGA-D8-A1XG	LRRC4	SNP	Missense_Mutation	7	127670674	A	C	14	81
BRCA	TCGA-D8-A1XG	NIPAL2	DEL	Frame_Shift_Del	8	99217462	AC	-	2	71
BRCA	TCGA-D8-A1XG	ANGPTL2	SNP	Missense_Mutation	9	129870656	C	T	31	85
BRCA	TCGA-D8-A1XJ	COL11A1	SNP	Missense_Mutation	1	103540280	C	A	17	100
BRCA	TCGA-D8-A1XJ	SDE2	SNP	Silent	1	226180127	A	G	7	20
BRCA	TCGA-D8-A1XJ	RYR2	SNP	Missense_Mutation	1	237675055	G	A	38	86
BRCA	TCGA-D8-A1XJ	TXLNA	SNP	Missense_Mutation	1	32647073	G	A	41	91
BRCA	TCGA-D8-A1XJ	LCK	SNP	Silent	1	32742227	G	A	37	47
BRCA	TCGA-D8-A1XJ	GJA9	SNP	Silent	1	39341552	G	T	43	57
BRCA	TCGA-D8-A1XJ	NASP	SNP	Silent	1	46079800	G	A	41	51
BRCA	TCGA-D8-A1XJ	L1TD1	SNP	Missense_Mutation	1	62672320	G	T	36	34
BRCA	TCGA-D8-A1XJ	FANK1	SNP	Nonsense_Mutation	10	127697978	C	T	25	64
BRCA	TCGA-D8-A1XJ	EBF3	SNP	Silent	10	131671777	G	A	40	54
BRCA	TCGA-D8-A1XJ	PARD3	SNP	Missense_Mutation	10	34649154	C	T	29	89
BRCA	TCGA-D8-A1XJ	DDX6	SNP	Missense_Mutation	11	118629524	C	T	29	100
BRCA	TCGA-D8-A1XJ	NLRX1	SNP	Missense_Mutation	11	119043070	C	T	31	49
BRCA	TCGA-D8-A1XJ	MICALCL	SNP	Splice_Site	11	12371384	G	A	33	75
BRCA	TCGA-D8-A1XJ	KCNQ1	SNP	Missense_Mutation	11	2683237	G	A	45	63
BRCA	TCGA-D8-A1XJ	NDUFS8	SNP	Missense_Mutation	11	67803732	G	A	37	78
BRCA	TCGA-D8-A1XJ	CACNA1C	SNP	Silent	12	2558201	C	A	31	51
BRCA	TCGA-D8-A1XJ	PPHLN1	DEL	Frame_Shift_Del	12	42778795	AG	-	3	55
BRCA	TCGA-D8-A1XJ	OR6C74	SNP	Silent	12	55641891	C	T	32	48
BRCA	TCGA-D8-A1XJ	APEX1	SNP	Missense_Mutation	14	20924089	G	A	33	62
BRCA	TCGA-D8-A1XJ	PNN	SNP	Missense_Mutation	14	39648302	G	A	39	99
BRCA	TCGA-D8-A1XJ	STX4	SNP	Missense_Mutation	16	31050965	C	T	27	83
BRCA	TCGA-D8-A1XJ	MYH8	SNP	Missense_Mutation	17	10307784	C	T	32	100
BRCA	TCGA-D8-A1XJ	HDAC5	SNP	Missense_Mutation	17	42168760	G	A	33	80
BRCA	TCGA-D8-A1XJ	ADAM11	SNP	Missense_Mutation	17	42850750	G	A	37	96
BRCA	TCGA-D8-A1XJ	MAPT	SNP	Missense_Mutation	17	44073872	G	C	41	72
BRCA	TCGA-D8-A1XJ	DVL2	SNP	Silent	17	7129292	G	A	43	47
BRCA	TCGA-D8-A1XJ	OTOP2	SNP	Missense_Mutation	17	72926997	G	A	37	98
BRCA	TCGA-D8-A1XJ	TP53	SNP	Missense_Mutation	17	7577094	G	C	39	66
BRCA	TCGA-D8-A1XJ	NEDD4L	SNP	Missense_Mutation	18	56054707	A	C	4	91
BRCA	TCGA-D8-A1XJ	ANKRD12	SNP	Missense_Mutation	18	9254875	A	G	8	93
BRCA	TCGA-D8-A1XJ	ZNF563	SNP	Nonsense_Mutation	19	12429836	G	A	37	53
BRCA	TCGA-D8-A1XJ	OR1I1	SNP	Missense_Mutation	19	15198028	C	T	19	60
BRCA	TCGA-D8-A1XJ	ARHGEF1	SNP	Missense_Mutation	19	42399493	C	T	30	48
BRCA	TCGA-D8-A1XJ	ZNF551	DEL	Frame_Shift_Del	19	58197963	AGAT	-	3	58
BRCA	TCGA-D8-A1XJ	FUT5	SNP	Silent	19	5866759	G	A	40	32
BRCA	TCGA-D8-A1XJ	GPR45	SNP	Nonsense_Mutation	2	105859375	C	T	23	62
BRCA	TCGA-D8-A1XJ	PTPN18	SNP	Silent	2	131127382	C	A	29	44
BRCA	TCGA-D8-A1XJ	CCDC150	SNP	Missense_Mutation	2	197521850	C	T	31	69
BRCA	TCGA-D8-A1XJ	EFR3B	SNP	Missense_Mutation	2	25314227	G	A	35	80
BRCA	TCGA-D8-A1XJ	CAD	SNP	Missense_Mutation	2	27445851	G	T	46	91
BRCA	TCGA-D8-A1XJ	SLC4A5	SNP	Missense_Mutation	2	74474339	A	G	12	87
BRCA	TCGA-D8-A1XJ	FAM65C	SNP	Silent	20	49219050	C	T	32	54
BRCA	TCGA-D8-A1XJ	TPD52L2	SNP	Missense_Mutation	20	62505106	C	T	30	61
BRCA	TCGA-D8-A1XJ	CLDN17	SNP	Missense_Mutation	21	31538298	G	A	40	35
BRCA	TCGA-D8-A1XJ	ARHGAP6	SNP	Missense_Mutation	23	11206973	A	C	4	85
BRCA	TCGA-D8-A1XJ	BCORL1	DEL	In_Frame_Del	23	129147257	AGA	-	11	77
BRCA	TCGA-D8-A1XJ	PIR	SNP	Missense_Mutation	23	15425651	G	A	40	76
BRCA	TCGA-D8-A1XJ	RPS6KA3	SNP	Missense_Mutation	23	20212321	G	A	40	84
BRCA	TCGA-D8-A1XJ	MAGEB18	SNP	Silent	23	26157853	C	T	28	55
BRCA	TCGA-D8-A1XJ	CYSLTR1	SNP	Silent	23	77528896	G	T	47	62
BRCA	TCGA-D8-A1XJ	DZIP1L	SNP	Nonsense_Mutation	3	137807223	G	A	45	66
BRCA	TCGA-D8-A1XJ	PRR23B	SNP	Missense_Mutation	3	138739098	C	T	19	52
BRCA	TCGA-D8-A1XJ	CLSTN2	SNP	Missense_Mutation	3	139894828	C	T	29	80
BRCA	TCGA-D8-A1XJ	NDUFB5	SNP	Missense_Mutation	3	179322679	C	T	31	53
BRCA	TCGA-D8-A1XJ	MUC4	SNP	Missense_Mutation	3	195512698	G	A	42	57
BRCA	TCGA-D8-A1XJ	KIAA0226	SNP	Missense_Mutation	3	197402344	C	T	29	100
BRCA	TCGA-D8-A1XJ	LRIG1	SNP	Missense_Mutation	3	66433747	G	A	40	56
BRCA	TCGA-D8-A1XJ	PPA2	SNP	Missense_Mutation	4	106395125	G	A	37	65
BRCA	TCGA-D8-A1XJ	ADAD1	DEL	Frame_Shift_Del	4	123332537	AA	-	13	68
BRCA	TCGA-D8-A1XJ	SPRY1	SNP	Missense_Mutation	4	124323620	C	T	31	65
BRCA	TCGA-D8-A1XJ	ANXA10	SNP	Missense_Mutation	4	169085364	G	A	45	71
BRCA	TCGA-D8-A1XJ	VCAN	SNP	Missense_Mutation	5	82817555	G	T	35	49
BRCA	TCGA-D8-A1XJ	SYNGAP1	SNP	Missense_Mutation	6	33403296	C	T	17	79
BRCA	TCGA-D8-A1XJ	MAPK13	SNP	Missense_Mutation	6	36106757	G	A	45	99
BRCA	TCGA-D8-A1XJ	COL12A1	SNP	Silent	6	75893097	G	A	46	63
BRCA	TCGA-D8-A1XJ	BACH2	SNP	Missense_Mutation	6	90718472	C	T	23	97
BRCA	TCGA-D8-A1XJ	HOXA4	SNP	Missense_Mutation	7	27168854	G	A	41	71
BRCA	TCGA-D8-A1XJ	LANCL2	SNP	Missense_Mutation	7	55466215	A	G	4	53
BRCA	TCGA-D8-A1XJ	KIAA0196	SNP	Nonsense_Mutation	8	126059486	G	A	37	78
BRCA	TCGA-D8-A1XJ	ERICH1	SNP	Splice_Site	8	614677	C	G	32	78
BRCA	TCGA-D8-A1XJ	WDR85	SNP	Silent	9	140449871	C	T	32	40
BRCA	TCGA-D8-A1XJ	TEK	SNP	Silent	9	27183605	C	G	30	44
BRCA	TCGA-D8-A1XJ	FAM75A2	SNP	Missense_Mutation	9	39890233	G	T	45	52
BRCA	TCGA-D8-A1XL	CDC14A	SNP	Missense_Mutation	1	100961587	C	A	25	84
BRCA	TCGA-D8-A1XL	FLG	SNP	Missense_Mutation	1	152275600	T	C	58	49
BRCA	TCGA-D8-A1XL	KCNN3	SNP	Missense_Mutation	1	154841911	G	T	41	63
BRCA	TCGA-D8-A1XL	LAMC1	SNP	Missense_Mutation	1	182993128	G	A	37	70
BRCA	TCGA-D8-A1XL	HMCN1	SNP	Missense_Mutation	1	186122990	G	A	40	52
BRCA	TCGA-D8-A1XL	FAM5C	SNP	Missense_Mutation	1	190067803	A	T	8	86
BRCA	TCGA-D8-A1XL	CDC42BPA	SNP	Missense_Mutation	1	227288919	G	T	44	72
BRCA	TCGA-D8-A1XL	TRIM67	SNP	Missense_Mutation	1	231344976	C	A	20	73
BRCA	TCGA-D8-A1XL	CSMD2	SNP	Splice_Site	1	33985410	A	G	14	86
BRCA	TCGA-D8-A1XL	TTC39A	SNP	Missense_Mutation	1	51761833	T	C	51	55
BRCA	TCGA-D8-A1XL	DAB1	INS	Splice_site	1	57491653	-	G	19	85
BRCA	TCGA-D8-A1XL	INPP5F	SNP	Missense_Mutation	10	121587065	T	C	62	71
BRCA	TCGA-D8-A1XL	FGFR2	SNP	Missense_Mutation	10	123258034	A	T	12	55
BRCA	TCGA-D8-A1XL	ZRANB1	SNP	Missense_Mutation	10	126673532	G	C	33	83
BRCA	TCGA-D8-A1XL	C10orf71	SNP	Missense_Mutation	10	50530920	A	C	1	36
BRCA	TCGA-D8-A1XL	HTR3B	SNP	Silent	11	113815320	C	T	24	54
BRCA	TCGA-D8-A1XL	C11orf63	SNP	Missense_Mutation	11	122756780	G	C	33	81
BRCA	TCGA-D8-A1XL	KIRREL3	SNP	Silent	11	126396467	G	A	40	42
BRCA	TCGA-D8-A1XL	KRTAP5-6	DEL	In_Frame_Del	11	1718512	GGCTGTGGGGGCTGTGGCTCT	-	39	51
BRCA	TCGA-D8-A1XL	OR5D13	SNP	Missense_Mutation	11	55541722	G	A	34	57
BRCA	TCGA-D8-A1XL	OR5M9	SNP	Missense_Mutation	11	56230715	T	C	54	52
BRCA	TCGA-D8-A1XL	OR1S2	SNP	Missense_Mutation	11	57970919	C	A	24	47
BRCA	TCGA-D8-A1XL	OR5B12	SNP	Missense_Mutation	11	58207097	G	T	33	73
BRCA	TCGA-D8-A1XL	VWCE	SNP	Missense_Mutation	11	61026440	G	C	33	74
BRCA	TCGA-D8-A1XL	DCHS1	SNP	Missense_Mutation	11	6643297	G	C	35	96
BRCA	TCGA-D8-A1XL	OR6A2	SNP	Missense_Mutation	11	6816236	G	A	37	70
BRCA	TCGA-D8-A1XL	IL18BP	SNP	Splice_Site	11	71712371	G	C	44	69
BRCA	TCGA-D8-A1XL	SELPLG	SNP	Splice_site	12	109017662	G	A	46	50
BRCA	TCGA-D8-A1XL	DNAH10	SNP	Missense_Mutation	12	124343746	C	T	19	100
BRCA	TCGA-D8-A1XL	DNAH10	SNP	Missense_Mutation	12	124418005	C	T	17	99
BRCA	TCGA-D8-A1XL	TMEM132C	SNP	Missense_Mutation	12	129028531	T	C	55	77
BRCA	TCGA-D8-A1XL	HSD17B6	SNP	Missense_Mutation	12	57167880	C	G	24	62
BRCA	TCGA-D8-A1XL	PTPRB	SNP	Silent	12	70964942	T	G	49	44
BRCA	TCGA-D8-A1XL	CD163L1	SNP	Missense_Mutation	12	7548822	G	C	48	48
BRCA	TCGA-D8-A1XL	PCK2	SNP	Silent	14	24567421	C	A	22	55
BRCA	TCGA-D8-A1XL	MDGA2	SNP	Missense_Mutation	14	47687332	T	A	58	90
BRCA	TCGA-D8-A1XL	KIAA0586	SNP	Splice_site	14	58925191	A	G	11	51
BRCA	TCGA-D8-A1XL	SPTB	SNP	Missense_Mutation	14	65270474	G	A	38	85
BRCA	TCGA-D8-A1XL	C14orf166B	SNP	Missense_Mutation	14	77323744	A	G	16	56
BRCA	TCGA-D8-A1XL	CCDC88C	SNP	Splice_Site	14	91810002	C	G	24	96
BRCA	TCGA-D8-A1XL	RSL1D1	SNP	Missense_Mutation	16	11940658	C	T	29	92
BRCA	TCGA-D8-A1XL	EVI2B	SNP	Missense_Mutation	17	29632390	G	T	48	54
BRCA	TCGA-D8-A1XL	KRT31	SNP	Missense_Mutation	17	39550341	C	G	17	76
BRCA	TCGA-D8-A1XL	NLRP1	SNP	Silent	17	5461874	G	A	36	51
BRCA	TCGA-D8-A1XL	LLGL2	SNP	Missense_Mutation	17	73555430	C	G	25	73
BRCA	TCGA-D8-A1XL	TP53	SNP	Missense_Mutation	17	7577539	G	A	39	60
BRCA	TCGA-D8-A1XL	AURKB	SNP	Missense_Mutation	17	8110509	A	G	12	87
BRCA	TCGA-D8-A1XL	ATG4D	SNP	Missense_Mutation	19	10659619	A	T	10	59
BRCA	TCGA-D8-A1XL	CPAMD8	SNP	Missense_Mutation	19	17039931	A	T	9	51
BRCA	TCGA-D8-A1XL	ACTL9	SNP	Missense_Mutation	19	8808499	C	G	17	70
BRCA	TCGA-D8-A1XL	ZNF177	SNP	Missense_Mutation	19	9492136	T	G	56	80
BRCA	TCGA-D8-A1XL	NEUROD1	SNP	Missense_Mutation	2	182542979	C	A	25	67
BRCA	TCGA-D8-A1XL	EPT1	SNP	Missense_Mutation	2	26587746	T	C	64	87
BRCA	TCGA-D8-A1XL	KRTAP15-1	SNP	Missense_Mutation	21	31812853	T	A	50	42
BRCA	TCGA-D8-A1XL	KCNJ15	SNP	Missense_Mutation	21	39671727	C	A	21	64
BRCA	TCGA-D8-A1XL	PLA2G3	SNP	Missense_Mutation	22	31532946	G	T	47	63
BRCA	TCGA-D8-A1XL	IL13RA2	SNP	Missense_Mutation	23	114242525	T	C	54	65
BRCA	TCGA-D8-A1XL	NKRF	SNP	Missense_Mutation	23	118724267	C	T	27	77
BRCA	TCGA-D8-A1XL	HS6ST2	SNP	Missense_Mutation	23	131762777	A	C	9	68
BRCA	TCGA-D8-A1XL	CTPS2	SNP	Splice_Site	23	16711263	C	G	18	94
BRCA	TCGA-D8-A1XL	MXRA5	SNP	Missense_Mutation	23	3228241	C	T	19	48
BRCA	TCGA-D8-A1XL	POPDC2	SNP	Missense_Mutation	3	119378865	G	T	46	62
BRCA	TCGA-D8-A1XL	POLQ	SNP	Missense_Mutation	3	121217489	G	C	36	69
BRCA	TCGA-D8-A1XL	IFT122	SNP	Missense_Mutation	3	129195606	C	G	20	100
BRCA	TCGA-D8-A1XL	PIK3CA	SNP	Missense_Mutation	3	178927980	T	C	55	89
BRCA	TCGA-D8-A1XL	STAC	SNP	Missense_Mutation	3	36485094	A	G	3	90
BRCA	TCGA-D8-A1XL	ITIH1	SNP	Missense_Mutation	3	52822303	C	T	28	64
BRCA	TCGA-D8-A1XL	AGXT2L1	SNP	Missense_Mutation	4	109672126	T	A	52	72
BRCA	TCGA-D8-A1XL	PRDM5	SNP	Nonsense_Mutation	4	121739572	C	A	30	96
BRCA	TCGA-D8-A1XL	ODZ3	SNP	Missense_Mutation	4	183714346	G	A	38	98
BRCA	TCGA-D8-A1XL	LRRC66	INS	Frame_Shift_Ins	4	52861781	-	A	61	51
BRCA	TCGA-D8-A1XL	LNX1	SNP	Missense_Mutation	4	54362419	C	G	32	75
BRCA	TCGA-D8-A1XL	BCLAF1	DEL	In_Frame_Del	6	136599066	CGGCCC	-	19	74
BRCA	TCGA-D8-A1XL	NHLRC1	SNP	Missense_Mutation	6	18122254	T	G	50	71
BRCA	TCGA-D8-A1XL	SLC17A1	SNP	Missense_Mutation	6	25801134	C	G	30	70
BRCA	TCGA-D8-A1XL	OR2B2	SNP	Missense_Mutation	6	27879388	G	A	46	79
BRCA	TCGA-D8-A1XL	GNL1	SNP	Silent	6	30513924	C	T	32	65
BRCA	TCGA-D8-A1XL	UBR2	SNP	Silent	6	42585064	C	T	23	49
BRCA	TCGA-D8-A1XL	AARS2	SNP	Missense_Mutation	6	44274104	C	T	31	96
BRCA	TCGA-D8-A1XL	BAI3	SNP	Missense_Mutation	6	69348974	C	A	20	65
BRCA	TCGA-D8-A1XL	MDN1	DEL	In_Frame_Del	6	90390440	CAGCGCCCT	-	25	49
BRCA	TCGA-D8-A1XL	ZNF716	SNP	Missense_Mutation	7	57528859	A	G	8	72
BRCA	TCGA-D8-A1XL	KIAA1324L	SNP	Missense_Mutation	7	86537782	C	A	32	77
BRCA	TCGA-D8-A1XL	C7orf63	SNP	Silent	7	89939392	G	A	44	86
BRCA	TCGA-D8-A1XL	ADCY8	SNP	Missense_Mutation	8	131955636	C	G	25	77
BRCA	TCGA-D8-A1XL	DENND3	SNP	Silent	8	142161849	C	T	30	49
BRCA	TCGA-D8-A1XL	PRPF4	SNP	Missense_Mutation	9	116053913	G	C	41	52
BRCA	TCGA-D8-A1XL	ADAMTSL1	SNP	Missense_Mutation	9	18829873	A	T	8	58
BRCA	TCGA-D8-A1XL	RUSC2	SNP	Missense_Mutation	9	35558279	A	G	11	71
BRCA	TCGA-D8-A1XM	COL11A1	SNP	Splice_Site	1	103461544	C	T	18	98
BRCA	TCGA-D8-A1XM	CD2	SNP	Missense_Mutation	1	117311125	A	C	9	56
BRCA	TCGA-D8-A1XM	FAM78B	SNP	Silent	1	166135414	G	A	38	54
BRCA	TCGA-D8-A1XM	LRRC41	SNP	Missense_Mutation	1	46751244	C	T	32	61
BRCA	TCGA-D8-A1XM	DOCK7	SNP	Silent	1	62970400	G	C	45	52
BRCA	TCGA-D8-A1XM	KLHL17	SNP	Missense_Mutation	1	897038	G	A	40	98
BRCA	TCGA-D8-A1XM	SEC23IP	SNP	Missense_Mutation	10	121663612	G	C	33	58
BRCA	TCGA-D8-A1XM	CUZD1	SNP	Nonsense_Mutation	10	124593252	C	T	30	73
BRCA	TCGA-D8-A1XM	GRID1	SNP	Missense_Mutation	10	87379751	C	T	19	98
BRCA	TCGA-D8-A1XM	SORL1	SNP	Missense_Mutation	11	121393316	C	T	29	100
BRCA	TCGA-D8-A1XM	FBXO3	SNP	Nonsense_Mutation	11	33763554	G	C	45	79
BRCA	TCGA-D8-A1XM	AMBRA1	SNP	Silent	11	46568822	C	T	29	63
BRCA	TCGA-D8-A1XM	OR4C15	SNP	Missense_Mutation	11	55322666	C	A	32	91
BRCA	TCGA-D8-A1XM	WEE1	SNP	Missense_Mutation	11	9608368	G	T	45	62
BRCA	TCGA-D8-A1XM	KRT6B	SNP	Missense_Mutation	12	52844244	C	T	19	64
BRCA	TCGA-D8-A1XM	DCD	SNP	Missense_Mutation	12	55039438	A	T	2	53
BRCA	TCGA-D8-A1XM	HTR2A	SNP	Silent	13	47409635	C	A	29	78
BRCA	TCGA-D8-A1XM	CILP	SNP	Silent	15	65496643	C	T	29	54
BRCA	TCGA-D8-A1XM	SMG1	SNP	Nonsense_Mutation	16	18839447	G	T	45	78
BRCA	TCGA-D8-A1XM	GPR97	SNP	Silent	16	57710130	G	A	35	58
BRCA	TCGA-D8-A1XM	MYO1C	SNP	Missense_Mutation	17	1374587	G	A	40	69
BRCA	TCGA-D8-A1XM	SLFN14	SNP	Silent	17	33875444	C	T	23	51
BRCA	TCGA-D8-A1XM	ERBB2	SNP	Missense_Mutation	17	37880220	T	C	63	90
BRCA	TCGA-D8-A1XM	ACSF2	SNP	Silent	17	48541257	G	A	37	35
BRCA	TCGA-D8-A1XM	MBTD1	DEL	In_Frame_Del	17	49297759	AGA	-	7	93
BRCA	TCGA-D8-A1XM	GPR142	SNP	Silent	17	72366697	C	T	19	43
BRCA	TCGA-D8-A1XM	ZBTB4	SNP	Missense_Mutation	17	7370012	C	T	23	74
BRCA	TCGA-D8-A1XM	ZFP14	SNP	Missense_Mutation	19	36832278	C	T	29	50
BRCA	TCGA-D8-A1XM	CACNG7	SNP	Missense_Mutation	19	54418757	C	T	31	88
BRCA	TCGA-D8-A1XM	DDX18	SNP	Missense_Mutation	2	118582184	G	A	37	99
BRCA	TCGA-D8-A1XM	DPP4	SNP	Missense_Mutation	2	162929936	C	T	19	74
BRCA	TCGA-D8-A1XM	LOXL3	SNP	Silent	2	74763222	G	A	33	61
BRCA	TCGA-D8-A1XM	INPP4A	SNP	Silent	2	99204011	G	A	45	62
BRCA	TCGA-D8-A1XM	MRPS26	SNP	Missense_Mutation	20	3028487	T	G	59	60
BRCA	TCGA-D8-A1XM	EP300	SNP	Missense_Mutation	22	41545883	C	T	31	98
BRCA	TCGA-D8-A1XM	BCORL1	SNP	Missense_Mutation	23	129150080	C	T	19	52
BRCA	TCGA-D8-A1XM	F8	SNP	Silent	23	154182270	C	T	32	67
BRCA	TCGA-D8-A1XM	MXRA5	SNP	Missense_Mutation	23	3238221	C	A	20	56
BRCA	TCGA-D8-A1XM	NLGN4X	SNP	Missense_Mutation	23	5811184	T	A	55	36
BRCA	TCGA-D8-A1XM	ZMYM3	SNP	Silent	23	70462884	G	A	44	79
BRCA	TCGA-D8-A1XM	RPS4X	SNP	Missense_Mutation	23	71494957	G	C	33	70
BRCA	TCGA-D8-A1XM	DIAPH2	SNP	Missense_Mutation	23	96185793	T	A	49	85
BRCA	TCGA-D8-A1XM	ATP2B2	SNP	Missense_Mutation	3	10400565	C	T	23	97
BRCA	TCGA-D8-A1XM	XPC	SNP	Missense_Mutation	3	14197851	C	T	32	99
BRCA	TCGA-D8-A1XM	MED12L	SNP	Silent	3	151075105	C	A	29	65
BRCA	TCGA-D8-A1XM	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-D8-A1XM	VPRBP	SNP	Missense_Mutation	3	51458364	T	C	52	90
BRCA	TCGA-D8-A1XM	ERVMER34-1	INS	Frame_Shift_Ins	4	53610788	-	A	17	44
BRCA	TCGA-D8-A1XM	NUDT12	SNP	Splice_Site	5	102888118	C	T	24	98
BRCA	TCGA-D8-A1XM	AP3B1	SNP	Missense_Mutation	5	77524009	G	A	33	59
BRCA	TCGA-D8-A1XM	SLC22A16	SNP	Missense_Mutation	6	110778105	T	G	63	87
BRCA	TCGA-D8-A1XM	MED23	SNP	Nonsense_Mutation	6	131912640	G	A	37	78
BRCA	TCGA-D8-A1XM	PNLDC1	SNP	Silent	6	160232782	C	T	29	69
BRCA	TCGA-D8-A1XM	MLLT4	SNP	Missense_Mutation	6	168352584	G	A	36	84
BRCA	TCGA-D8-A1XM	DST	SNP	Missense_Mutation	6	56437729	C	T	23	85
BRCA	TCGA-D8-A1XM	DGKB	SNP	Missense_Mutation	7	14880851	G	A	37	83
BRCA	TCGA-D8-A1XM	GPSM1	SNP	Missense_Mutation	9	139229013	G	A	37	95
BRCA	TCGA-D8-A1XO	MCL1	SNP	Silent	1	150551359	A	T	5	45
BRCA	TCGA-D8-A1XO	ITGB3BP	SNP	Missense_Mutation	1	63920077	C	G	32	54
BRCA	TCGA-D8-A1XO	KCNMA1	SNP	Nonsense_Mutation	10	78943191	T	A	55	79
BRCA	TCGA-D8-A1XO	ATM	SNP	Silent	11	108121488	G	T	48	39
BRCA	TCGA-D8-A1XO	CDH1	SNP	Nonsense_Mutation	16	68772218	C	T	21	53
BRCA	TCGA-D8-A1XO	ZFHX3	SNP	Nonsense_Mutation	16	72832413	G	A	45	100
BRCA	TCGA-D8-A1XO	FKBP8	SNP	Missense_Mutation	19	18650372	C	A	29	90
BRCA	TCGA-D8-A1XO	NPHS1	SNP	Silent	19	36321761	G	A	40	29
BRCA	TCGA-D8-A1XO	PPM1B	SNP	Silent	2	44429052	C	T	29	56
BRCA	TCGA-D8-A1XO	PDE9A	SNP	Missense_Mutation	21	44151970	G	A	39	46
BRCA	TCGA-D8-A1XO	RNF215	SNP	Missense_Mutation	22	30775744	A	T	7	84
BRCA	TCGA-D8-A1XO	NXF5	SNP	Silent	23	101096721	G	A	33	59
BRCA	TCGA-D8-A1XO	AR	SNP	Silent	23	66765081	C	T	27	52
BRCA	TCGA-D8-A1XO	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-D8-A1XO	FAT2	SNP	Nonsense_Mutation	5	150924228	G	A	47	57
BRCA	TCGA-D8-A1XO	POPDC3	SNP	Missense_Mutation	6	105609402	G	A	40	58
BRCA	TCGA-D8-A1XO	MLL5	SNP	Missense_Mutation	7	104719345	G	T	48	100
BRCA	TCGA-D8-A1XO	STK31	SNP	Missense_Mutation	7	23792363	A	G	10	55
BRCA	TCGA-D8-A1XO	AQP7	SNP	Silent	9	33387007	G	A	37	44
BRCA	TCGA-D8-A1XR	DENND2D	SNP	Missense_Mutation	1	111742312	A	G	6	87
BRCA	TCGA-D8-A1XR	TPM3	SNP	Missense_Mutation	1	154163748	C	A	24	87
BRCA	TCGA-D8-A1XR	ETV3L	SNP	Missense_Mutation	1	157069272	C	T	26	51
BRCA	TCGA-D8-A1XR	SMC3	SNP	Missense_Mutation	10	112361451	A	G	16	77
BRCA	TCGA-D8-A1XR	QSER1	SNP	Missense_Mutation	11	32954399	C	T	32	62
BRCA	TCGA-D8-A1XR	CIT	SNP	Missense_Mutation	12	120156107	C	T	25	70
BRCA	TCGA-D8-A1XR	CUL4A	SNP	Silent	13	113897392	G	A	33	65
BRCA	TCGA-D8-A1XR	MAP2K3	SNP	Missense_Mutation	17	21206523	G	A	34	100
BRCA	TCGA-D8-A1XR	KCNJ12	SNP	Missense_Mutation	17	21319592	G	A	38	100
BRCA	TCGA-D8-A1XR	MRPL27	SNP	Silent	17	48447871	G	A	47	49
BRCA	TCGA-D8-A1XR	ZNF714	SNP	Missense_Mutation	19	21299748	T	A	60	36
BRCA	TCGA-D8-A1XR	LEUTX	SNP	Silent	19	40275187	C	T	31	52
BRCA	TCGA-D8-A1XR	PEG3	SNP	Missense_Mutation	19	57328905	C	T	23	60
BRCA	TCGA-D8-A1XR	DNER	SNP	Silent	2	230312186	G	T	35	46
BRCA	TCGA-D8-A1XR	DSCAM	SNP	Missense_Mutation	21	41741044	C	T	27	100
BRCA	TCGA-D8-A1XR	DIP2A	SNP	Missense_Mutation	21	47965866	A	T	8	53
BRCA	TCGA-D8-A1XR	EIF4ENIF1	INS	Frame_Shift_Ins	22	31867837	-	T	16	87
BRCA	TCGA-D8-A1XR	FBXO7	SNP	Missense_Mutation	22	32889121	G	C	44	50
BRCA	TCGA-D8-A1XR	FAM19A5	SNP	Missense_Mutation	22	49042480	G	A	38	93
BRCA	TCGA-D8-A1XR	SH3KBP1	SNP	Missense_Mutation	23	19560229	G	A	38	57
BRCA	TCGA-D8-A1XR	PHF16	SNP	Splice_site	23	46913561	G	A	46	95
BRCA	TCGA-D8-A1XR	P2RY10	SNP	Missense_Mutation	23	78216289	T	A	52	74
BRCA	TCGA-D8-A1XR	MUC4	SNP	Missense_Mutation	3	195507529	A	G	14	47
BRCA	TCGA-D8-A1XR	BSN	SNP	Missense_Mutation	3	49694289	C	T	19	77
BRCA	TCGA-D8-A1XR	KIAA1045	SNP	Missense_Mutation	9	34977197	T	C	63	81
BRCA	TCGA-D8-A1XS	PM20D1	SNP	Silent	1	205813220	G	A	37	53
BRCA	TCGA-D8-A1XS	DNTTIP2	SNP	Missense_Mutation	1	94337761	C	A	21	96
BRCA	TCGA-D8-A1XS	RRM1	SNP	Missense_Mutation	11	4127418	C	G	32	96
BRCA	TCGA-D8-A1XS	BEST1	SNP	Silent	11	61725644	C	T	32	67
BRCA	TCGA-D8-A1XS	IRF8	SNP	Silent	16	85952387	C	T	31	50
BRCA	TCGA-D8-A1XS	ABCC3	DEL	Frame_Shift_Del	17	48755424	CCCATTTCCT	-	22	52
BRCA	TCGA-D8-A1XS	C17orf77	SNP	Missense_Mutation	17	72588199	C	T	27	50
BRCA	TCGA-D8-A1XS	RIF1	SNP	Missense_Mutation	2	152320011	A	G	4	65
BRCA	TCGA-D8-A1XS	THADA	SNP	Missense_Mutation	2	43798926	A	C	6	66
BRCA	TCGA-D8-A1XS	SNAP25	SNP	Missense_Mutation	20	10256162	G	A	38	97
BRCA	TCGA-D8-A1XS	ASCC2	SNP	Missense_Mutation	22	30210708	T	G	63	57
BRCA	TCGA-D8-A1XS	IGSF10	SNP	Missense_Mutation	3	151163762	G	T	48	48
BRCA	TCGA-D8-A1XS	P2RY1	SNP	Silent	3	152554180	C	T	19	43
BRCA	TCGA-D8-A1XS	SLC7A14	SNP	Missense_Mutation	3	170244644	G	A	40	80
BRCA	TCGA-D8-A1XS	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A1XS	C5orf52	SNP	Silent	5	157098676	C	A	31	45
BRCA	TCGA-D8-A1XS	MYLIP	SNP	Missense_Mutation	6	16145378	T	A	55	71
BRCA	TCGA-D8-A1XS	CAV1	INS	Frame_Shift_Ins	7	116165237	-	CC	42	49
BRCA	TCGA-D8-A1XS	ST3GAL1	SNP	Silent	8	134477071	G	A	47	51
BRCA	TCGA-D8-A1XS	PLEKHA2	SNP	Silent	8	38775523	C	T	32	100
BRCA	TCGA-D8-A1XS	COL15A1	SNP	Missense_Mutation	9	101767249	G	T	47	43
BRCA	TCGA-D8-A1XS	GOLGA2	SNP	Silent	9	131024001	C	T	28	61
BRCA	TCGA-D8-A1XT	BCL9	SNP	Missense_Mutation	1	147087614	C	A	28	100
BRCA	TCGA-D8-A1XT	FLG	SNP	Silent	1	152280540	C	T	20	45
BRCA	TCGA-D8-A1XT	CCT3	SNP	Missense_Mutation	1	156288708	C	T	27	82
BRCA	TCGA-D8-A1XT	PTCHD3	DEL	In_Frame_Del	10	27702894	GGGGTGCATCGTCCAGCTCCAGCGGCAGGC	-	35	54
BRCA	TCGA-D8-A1XT	OR6T1	SNP	Missense_Mutation	11	123813896	G	T	41	68
BRCA	TCGA-D8-A1XT	BRSK2	SNP	Silent	11	1477889	C	T	19	50
BRCA	TCGA-D8-A1XT	OR51F2	SNP	Missense_Mutation	11	4842865	G	A	33	81
BRCA	TCGA-D8-A1XT	SPTBN2	SNP	Missense_Mutation	11	66463885	C	G	29	96
BRCA	TCGA-D8-A1XT	MAP6	SNP	Silent	11	75298416	G	A	39	40
BRCA	TCGA-D8-A1XT	MARS	SNP	Missense_Mutation	12	57908826	G	A	42	76
BRCA	TCGA-D8-A1XT	HMGB1	SNP	Missense_Mutation	13	31037698	C	G	20	67
BRCA	TCGA-D8-A1XT	ADAMTS7	SNP	Silent	15	79068549	G	T	38	57
BRCA	TCGA-D8-A1XT	RPGRIP1L	SNP	Missense_Mutation	16	53686660	C	A	19	48
BRCA	TCGA-D8-A1XT	TP53	SNP	Missense_Mutation	17	7577112	C	G	25	94
BRCA	TCGA-D8-A1XT	DSEL	SNP	Nonsense_Mutation	18	65178250	C	T	21	64
BRCA	TCGA-D8-A1XT	MBP	SNP	Missense_Mutation	18	74701956	G	A	39	74
BRCA	TCGA-D8-A1XT	ZNF419	SNP	Missense_Mutation	19	58003544	C	T	24	54
BRCA	TCGA-D8-A1XT	POTEI	SNP	Silent	2	131221169	G	A	38	50
BRCA	TCGA-D8-A1XT	SCN1A	SNP	Missense_Mutation	2	166847987	C	T	31	64
BRCA	TCGA-D8-A1XT	NBEAL1	SNP	Silent	2	204037478	T	G	56	64
BRCA	TCGA-D8-A1XT	CCDC85A	SNP	Missense_Mutation	2	56420362	G	A	38	63
BRCA	TCGA-D8-A1XT	AUP1	SNP	Silent	2	74754622	A	G	4	53
BRCA	TCGA-D8-A1XT	YTHDF1	SNP	Missense_Mutation	20	61834555	G	T	35	88
BRCA	TCGA-D8-A1XT	APOBEC3C	SNP	Missense_Mutation	22	39414291	G	A	41	49
BRCA	TCGA-D8-A1XT	RHOXF2	SNP	Missense_Mutation	23	119293091	G	A	39	52
BRCA	TCGA-D8-A1XT	PHKA1	SNP	Missense_Mutation	23	71830973	T	C	57	55
BRCA	TCGA-D8-A1XT	DVL3	SNP	Missense_Mutation	3	183882690	T	A	63	53
BRCA	TCGA-D8-A1XT	TNIP3	SNP	Silent	4	122078381	C	T	31	53
BRCA	TCGA-D8-A1XT	TRPC3	SNP	Missense_Mutation	4	122853631	C	T	23	100
BRCA	TCGA-D8-A1XT	PCDH10	SNP	Nonsense_Mutation	4	134072136	C	T	21	67
BRCA	TCGA-D8-A1XT	FGFR4	SNP	Nonsense_Mutation	5	176519685	C	G	18	75
BRCA	TCGA-D8-A1XT	EXOC3	SNP	Missense_Mutation	5	465362	G	A	38	58
BRCA	TCGA-D8-A1XT	C6orf170	SNP	Missense_Mutation	6	121631945	C	T	30	76
BRCA	TCGA-D8-A1XT	OR2A7	SNP	Silent	7	143956461	T	C	55	46
BRCA	TCGA-D8-A1XT	DLX6	SNP	Missense_Mutation	7	96639271	G	C	36	64
BRCA	TCGA-D8-A1XT	TRPA1	SNP	Missense_Mutation	8	72973917	G	A	33	58
BRCA	TCGA-D8-A1XT	TLR4	SNP	Missense_Mutation	9	120476456	G	T	41	89
BRCA	TCGA-D8-A1XT	PRRC2B	SNP	Missense_Mutation	9	134360104	G	A	39	70
BRCA	TCGA-D8-A1XU	FLG2	SNP	Nonsense_Mutation	1	152329961	T	A	62	56
BRCA	TCGA-D8-A1XU	SPTA1	SNP	Silent	1	158590173	C	T	28	49
BRCA	TCGA-D8-A1XU	MACF1	SNP	Silent	1	39797714	G	T	39	48
BRCA	TCGA-D8-A1XU	ACSL5	SNP	Missense_Mutation	10	114185175	T	C	49	93
BRCA	TCGA-D8-A1XU	ST8SIA6	SNP	Missense_Mutation	10	17373535	A	T	7	78
BRCA	TCGA-D8-A1XU	SLC2A13	SNP	Silent	12	40223928	A	G	15	40
BRCA	TCGA-D8-A1XU	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-D8-A1XU	GOLGA6L2	SNP	Silent	15	23685207	T	C	54	44
BRCA	TCGA-D8-A1XU	UNC13C	SNP	Missense_Mutation	15	54590048	G	A	37	99
BRCA	TCGA-D8-A1XU	SKOR1	SNP	Silent	15	68124619	G	A	46	59
BRCA	TCGA-D8-A1XU	ARHGAP35	SNP	Nonsense_Mutation	19	47424345	C	T	29	65
BRCA	TCGA-D8-A1XU	SYT3	SNP	Silent	19	51132704	C	T	28	65
BRCA	TCGA-D8-A1XU	ZNF614	SNP	Missense_Mutation	19	52521732	C	T	30	58
BRCA	TCGA-D8-A1XU	ZNF749	SNP	Nonsense_Mutation	19	57956839	G	T	47	71
BRCA	TCGA-D8-A1XU	ADAM23	SNP	Missense_Mutation	2	207431970	C	T	29	99
BRCA	TCGA-D8-A1XU	C20orf112	SNP	Missense_Mutation	20	31041156	C	T	27	96
BRCA	TCGA-D8-A1XU	ZNF217	SNP	Splice_Site	20	52188259	C	G	18	78
BRCA	TCGA-D8-A1XU	TTC28	SNP	Missense_Mutation	22	28494912	C	T	19	86
BRCA	TCGA-D8-A1XU	RABL2B	SNP	Missense_Mutation	22	51215160	G	T	41	88
BRCA	TCGA-D8-A1XU	PHC3	SNP	Missense_Mutation	3	169847215	T	C	52	50
BRCA	TCGA-D8-A1XU	TTC21A	SNP	Missense_Mutation	3	39174599	G	A	45	57
BRCA	TCGA-D8-A1XU	HYAL2	SNP	Missense_Mutation	3	50357256	C	A	28	53
BRCA	TCGA-D8-A1XU	GALNTL6	SNP	Silent	4	173150860	G	A	45	60
BRCA	TCGA-D8-A1XU	ANKRD33B	SNP	Silent	5	10618519	C	T	19	51
BRCA	TCGA-D8-A1XU	C5orf51	SNP	Missense_Mutation	5	41911259	G	A	33	52
BRCA	TCGA-D8-A1XU	ROS1	SNP	Silent	6	117658378	C	T	23	52
BRCA	TCGA-D8-A1XU	CCDC170	SNP	Silent	6	151869573	A	G	11	54
BRCA	TCGA-D8-A1XV	IGSF8	SNP	Silent	1	160062103	T	C	55	21
BRCA	TCGA-D8-A1XV	NCDN	SNP	Nonsense_Mutation	1	36030851	C	T	23	53
BRCA	TCGA-D8-A1XV	CCDC17	SNP	Missense_Mutation	1	46088465	G	A	47	53
BRCA	TCGA-D8-A1XV	ODF2L	SNP	Silent	1	86841953	C	A	30	53
BRCA	TCGA-D8-A1XV	DDX6	SNP	Missense_Mutation	11	118626189	T	A	49	91
BRCA	TCGA-D8-A1XV	MTMR6	SNP	Missense_Mutation	13	25823617	C	T	27	42
BRCA	TCGA-D8-A1XV	CLPX	SNP	Silent	15	65459107	G	C	45	66
BRCA	TCGA-D8-A1XV	CYP1A2	SNP	Missense_Mutation	15	75047325	G	A	40	62
BRCA	TCGA-D8-A1XV	ZNF689	SNP	Missense_Mutation	16	30616444	G	A	41	90
BRCA	TCGA-D8-A1XV	PTRF	SNP	Missense_Mutation	17	40575012	G	A	39	57
BRCA	TCGA-D8-A1XV	KIF18B	SNP	Missense_Mutation	17	43011380	T	A	50	71
BRCA	TCGA-D8-A1XV	WSCD1	SNP	Missense_Mutation	17	5984198	G	A	37	68
BRCA	TCGA-D8-A1XV	PSMA8	SNP	Silent	18	23713974	C	T	19	46
BRCA	TCGA-D8-A1XV	INO80C	SNP	Missense_Mutation	18	33048579	G	A	43	96
BRCA	TCGA-D8-A1XV	ATP13A1	SNP	Missense_Mutation	19	19767522	G	C	39	91
BRCA	TCGA-D8-A1XV	FFAR3	SNP	Silent	19	35849945	C	T	19	55
BRCA	TCGA-D8-A1XV	CEACAM16	SNP	Missense_Mutation	19	45209123	G	A	40	63
BRCA	TCGA-D8-A1XV	PLA2R1	SNP	Missense_Mutation	2	160824180	C	T	18	52
BRCA	TCGA-D8-A1XV	TNFRSF6B	SNP	Missense_Mutation	20	62328257	G	A	39	53
BRCA	TCGA-D8-A1XV	CYP2D7P1	SNP	Silent	22	42537569	G	T	45	58
BRCA	TCGA-D8-A1XV	CD200R1L	SNP	Silent	3	112545931	A	G	14	47
BRCA	TCGA-D8-A1XV	GOLGB1	SNP	Silent	3	121416391	A	G	8	55
BRCA	TCGA-D8-A1XV	REST	SNP	Nonsense_Mutation	4	57777582	G	T	37	81
BRCA	TCGA-D8-A1XV	HPSE	SNP	Splice_Site	4	84231232	C	A	28	90
BRCA	TCGA-D8-A1XV	PCDHGA3	SNP	Missense_Mutation	5	140725686	G	C	42	77
BRCA	TCGA-D8-A1XV	MGAT4B	SNP	Missense_Mutation	5	179226297	C	T	23	81
BRCA	TCGA-D8-A1XV	HOMER1	SNP	Missense_Mutation	5	78671930	G	A	37	75
BRCA	TCGA-D8-A1XV	PHF3	SNP	Missense_Mutation	6	64422754	G	T	41	61
BRCA	TCGA-D8-A1XV	FBXO24	SNP	Missense_Mutation	7	100187289	G	A	39	51
BRCA	TCGA-D8-A1XV	FAM126A	SNP	Silent	7	22985376	C	T	19	49
BRCA	TCGA-D8-A1XW	FNDC7	SNP	Silent	1	109256138	T	G	56	65
BRCA	TCGA-D8-A1XW	PADI1	SNP	Missense_Mutation	1	17548919	T	A	51	68
BRCA	TCGA-D8-A1XW	SOAT1	SNP	Silent	1	179308636	C	T	32	68
BRCA	TCGA-D8-A1XW	USH2A	SNP	Missense_Mutation	1	215847722	C	A	25	96
BRCA	TCGA-D8-A1XW	TRIM67	SNP	Nonsense_Mutation	1	231335936	C	T	29	100
BRCA	TCGA-D8-A1XW	OR2T1	SNP	Missense_Mutation	1	248570049	T	A	59	68
BRCA	TCGA-D8-A1XW	OR2T29	SNP	Missense_Mutation	1	248722668	G	A	38	55
BRCA	TCGA-D8-A1XW	CCDC147	SNP	Missense_Mutation	10	106160488	T	A	51	42
BRCA	TCGA-D8-A1XW	C10orf12	SNP	Missense_Mutation	10	98742390	G	T	41	50
BRCA	TCGA-D8-A1XW	C10orf12	SNP	Missense_Mutation	10	98742978	A	G	5	55
BRCA	TCGA-D8-A1XW	SIK2	SNP	Missense_Mutation	11	111594680	G	A	41	69
BRCA	TCGA-D8-A1XW	OR8D1	SNP	Missense_Mutation	11	124180486	C	G	17	94
BRCA	TCGA-D8-A1XW	VPS26B	SNP	Missense_Mutation	11	134115368	G	A	40	97
BRCA	TCGA-D8-A1XW	PTPRJ	SNP	Missense_Mutation	11	48149442	C	T	17	57
BRCA	TCGA-D8-A1XW	CPT1A	SNP	Splice_site	11	68566686	G	T	40	40
BRCA	TCGA-D8-A1XW	PAH	SNP	Missense_Mutation	12	103288660	G	A	44	100
BRCA	TCGA-D8-A1XW	NUAK1	SNP	Missense_Mutation	12	106461184	G	A	40	76
BRCA	TCGA-D8-A1XW	FAM186A	SNP	Missense_Mutation	12	50748233	C	A	29	61
BRCA	TCGA-D8-A1XW	MYO1A	SNP	Missense_Mutation	12	57441140	T	C	54	62
BRCA	TCGA-D8-A1XW	TRHDE	SNP	Missense_Mutation	12	72956000	C	T	17	77
BRCA	TCGA-D8-A1XW	BBS10	SNP	Missense_Mutation	12	76741020	G	T	39	57
BRCA	TCGA-D8-A1XW	KCTD12	DEL	In_Frame_Del	13	77460152	CACCTGGCCCCC	-	17	56
BRCA	TCGA-D8-A1XW	CDC42BPB	SNP	Missense_Mutation	14	103400160	T	G	60	53
BRCA	TCGA-D8-A1XW	ZNF219	SNP	Silent	14	21560535	G	A	38	48
BRCA	TCGA-D8-A1XW	YLPM1	SNP	Missense_Mutation	14	75248373	C	A	26	79
BRCA	TCGA-D8-A1XW	DYX1C1	SNP	Splice_Site	15	55727258	T	C	53	68
BRCA	TCGA-D8-A1XW	ADAMTSL3	SNP	Silent	15	84488589	C	T	29	64
BRCA	TCGA-D8-A1XW	TPSB2	SNP	Silent	16	1279650	G	C	41	44
BRCA	TCGA-D8-A1XW	CDIPT	SNP	Silent	16	29872462	A	G	2	56
BRCA	TCGA-D8-A1XW	ZNF263	SNP	Missense_Mutation	16	3339518	C	T	29	57
BRCA	TCGA-D8-A1XW	PMFBP1	SNP	Silent	16	72166723	C	T	20	50
BRCA	TCGA-D8-A1XW	ZFHX3	SNP	Missense_Mutation	16	72830766	C	G	32	100
BRCA	TCGA-D8-A1XW	BLMH	SNP	Nonsense_Mutation	17	28613877	A	C	16	45
BRCA	TCGA-D8-A1XW	OR1A2	SNP	Missense_Mutation	17	3101122	A	T	8	51
BRCA	TCGA-D8-A1XW	FMNL1	SNP	Missense_Mutation	17	43314962	G	A	43	95
BRCA	TCGA-D8-A1XW	TP53	SNP	Splice_site	17	7578554	A	T	14	89
BRCA	TCGA-D8-A1XW	FBXO15	SNP	Silent	18	71740756	G	C	45	57
BRCA	TCGA-D8-A1XW	ZNF208	SNP	Nonsense_Mutation	19	22171632	A	C	13	58
BRCA	TCGA-D8-A1XW	TSHZ3	SNP	Silent	19	31769775	G	A	39	49
BRCA	TCGA-D8-A1XW	ZNF568	SNP	Missense_Mutation	19	37427682	T	A	56	59
BRCA	TCGA-D8-A1XW	ITPKC	SNP	Splice_Site	19	41231346	T	G	57	78
BRCA	TCGA-D8-A1XW	RSPH6A	SNP	Missense_Mutation	19	46299287	A	C	4	67
BRCA	TCGA-D8-A1XW	GP6	SNP	Missense_Mutation	19	55526258	C	G	24	46
BRCA	TCGA-D8-A1XW	CCDC74B	SNP	Missense_Mutation	2	130900856	G	A	48	52
BRCA	TCGA-D8-A1XW	CASP8	SNP	Missense_Mutation	2	202141566	A	T	14	69
BRCA	TCGA-D8-A1XW	NBEAL1	SNP	Missense_Mutation	2	203992635	T	C	49	73
BRCA	TCGA-D8-A1XW	SH3BP4	SNP	Missense_Mutation	2	235950855	C	G	24	84
BRCA	TCGA-D8-A1XW	C2orf18	SNP	Silent	2	26998432	G	A	46	49
BRCA	TCGA-D8-A1XW	IMMT	SNP	Missense_Mutation	2	86400803	G	C	48	53
BRCA	TCGA-D8-A1XW	PHF20	SNP	Silent	20	34528959	G	A	35	62
BRCA	TCGA-D8-A1XW	TPD52L2	SNP	Missense_Mutation	20	62520553	A	C	10	61
BRCA	TCGA-D8-A1XW	LTN1	SNP	Missense_Mutation	21	30331787	A	C	4	48
BRCA	TCGA-D8-A1XW	CECR2	SNP	Missense_Mutation	22	18028881	C	A	21	87
BRCA	TCGA-D8-A1XW	SLC7A4	SNP	Missense_Mutation	22	21385708	C	T	27	82
BRCA	TCGA-D8-A1XW	MYO18B	SNP	Silent	22	26164633	C	T	21	58
BRCA	TCGA-D8-A1XW	EWSR1	SNP	Splice_Site	22	29670255	A	G	15	64
BRCA	TCGA-D8-A1XW	FAM83F	SNP	Missense_Mutation	22	40417461	C	T	30	67
BRCA	TCGA-D8-A1XW	PACSIN2	SNP	Missense_Mutation	22	43287157	C	G	30	98
BRCA	TCGA-D8-A1XW	MORC4	DEL	Frame_Shift_Del	23	106184859	AGCCCTGTATGAAGGAGTG	-	3	60
BRCA	TCGA-D8-A1XW	IGSF1	SNP	Missense_Mutation	23	130416483	T	C	49	50
BRCA	TCGA-D8-A1XW	DNASE1L1	SNP	Missense_Mutation	23	153631301	G	C	41	55
BRCA	TCGA-D8-A1XW	ZBTB11	SNP	Silent	3	101370349	C	T	25	67
BRCA	TCGA-D8-A1XW	QTRTD1	SNP	Silent	3	113785093	C	G	32	61
BRCA	TCGA-D8-A1XW	AP2M1	DEL	Frame_Shift_Del	3	183898426	CCTCCAGCATCAGGTAAGCT	-	26	52
BRCA	TCGA-D8-A1XW	IL1RAP	SNP	Nonsense_Mutation	3	190321988	A	T	5	60
BRCA	TCGA-D8-A1XW	FSTL5	SNP	Missense_Mutation	4	162307095	T	C	56	88
BRCA	TCGA-D8-A1XW	LNX1	SNP	Silent	4	54374205	G	A	40	47
BRCA	TCGA-D8-A1XW	HNRNPD	DEL	Frame_Shift_Del	4	83278494	TT	-	56	91
BRCA	TCGA-D8-A1XW	PCDHB16	SNP	Missense_Mutation	5	140564371	C	T	30	61
BRCA	TCGA-D8-A1XW	SLC6A3	SNP	Missense_Mutation	5	1406352	C	G	28	75
BRCA	TCGA-D8-A1XW	DIAPH1	SNP	Missense_Mutation	5	140953199	G	C	41	93
BRCA	TCGA-D8-A1XW	FLT4	SNP	Silent	5	180046347	C	T	28	55
BRCA	TCGA-D8-A1XW	TRIM52	SNP	Missense_Mutation	5	180687133	A	C	3	43
BRCA	TCGA-D8-A1XW	GPR126	SNP	Missense_Mutation	6	142726951	A	G	2	72
BRCA	TCGA-D8-A1XW	HIST1H3I	SNP	Missense_Mutation	6	27840018	C	G	26	96
BRCA	TCGA-D8-A1XW	AMPH	SNP	Silent	7	38502653	G	T	41	46
BRCA	TCGA-D8-A1XW	SDK1	SNP	Missense_Mutation	7	4285355	A	G	10	85
BRCA	TCGA-D8-A1XW	ASL	SNP	Missense_Mutation	7	65552371	C	T	25	59
BRCA	TCGA-D8-A1XW	ZFAT	SNP	Missense_Mutation	8	135622886	T	C	58	77
BRCA	TCGA-D8-A1XW	TOP1MT	SNP	Missense_Mutation	8	144400190	T	G	58	63
BRCA	TCGA-D8-A1XW	RAB11FIP1	SNP	Missense_Mutation	8	37720609	G	C	46	60
BRCA	TCGA-D8-A1XW	ARFGEF1	SNP	Missense_Mutation	8	68139523	C	T	21	100
BRCA	TCGA-D8-A1XW	PRDM14	DEL	Frame_Shift_Del	8	70981582	AAGGTAAT	-	5	35
BRCA	TCGA-D8-A1XW	RAD54B	SNP	Silent	8	95399325	T	C	61	45
BRCA	TCGA-D8-A1XW	KCNT1	SNP	Silent	9	138669336	C	T	31	38
BRCA	TCGA-D8-A1XW	GLIS3	SNP	Silent	9	3856175	A	C	3	54
BRCA	TCGA-D8-A1XY	KIF26B	SNP	Silent	1	245582982	G	T	38	18
BRCA	TCGA-D8-A1XY	C1orf173	SNP	Missense_Mutation	1	75037178	C	T	32	65
BRCA	TCGA-D8-A1XY	UEVLD	SNP	Missense_Mutation	11	18566328	T	C	49	78
BRCA	TCGA-D8-A1XY	SERPING1	SNP	Missense_Mutation	11	57367733	G	A	46	66
BRCA	TCGA-D8-A1XY	ALG8	SNP	Silent	11	77812019	C	T	32	68
BRCA	TCGA-D8-A1XY	ZNF10	SNP	Missense_Mutation	12	133733005	T	G	50	51
BRCA	TCGA-D8-A1XY	DIP2B	SNP	Missense_Mutation	12	51112558	G	T	41	96
BRCA	TCGA-D8-A1XY	ATP7B	SNP	Silent	13	52548306	C	T	31	51
BRCA	TCGA-D8-A1XY	SPTB	SNP	Silent	14	65239968	C	T	23	41
BRCA	TCGA-D8-A1XY	RIN3	SNP	Missense_Mutation	14	93043720	C	T	23	49
BRCA	TCGA-D8-A1XY	ADAMTS17	SNP	Missense_Mutation	15	100672248	C	T	30	99
BRCA	TCGA-D8-A1XY	MAPK6	SNP	Missense_Mutation	15	52356190	G	T	37	96
BRCA	TCGA-D8-A1XY	PRSS8	SNP	Silent	16	31143759	G	A	40	48
BRCA	TCGA-D8-A1XY	CDH3	SNP	Missense_Mutation	16	68732208	G	A	38	57
BRCA	TCGA-D8-A1XY	MAP2K4	SNP	Missense_Mutation	17	12032481	C	G	24	98
BRCA	TCGA-D8-A1XY	CNTROB	SNP	Nonsense_Mutation	17	7847523	C	T	19	59
BRCA	TCGA-D8-A1XY	SHANK1	SNP	Silent	19	51217199	G	T	35	46
BRCA	TCGA-D8-A1XY	VSIG10L	SNP	Missense_Mutation	19	51837454	G	A	39	59
BRCA	TCGA-D8-A1XY	KIR3DL3	SNP	Missense_Mutation	19	55246750	G	T	43	49
BRCA	TCGA-D8-A1XY	SCN9A	SNP	Silent	2	167055875	G	A	45	62
BRCA	TCGA-D8-A1XY	FN1	SNP	Nonsense_Mutation	2	216262532	C	A	32	97
BRCA	TCGA-D8-A1XY	SPHKAP	SNP	Missense_Mutation	2	228881454	C	A	30	53
BRCA	TCGA-D8-A1XY	USP34	SNP	Silent	2	61416190	G	C	37	51
BRCA	TCGA-D8-A1XY	ANTXR1	SNP	Silent	2	69472437	G	A	38	40
BRCA	TCGA-D8-A1XY	DIP2A	SNP	Missense_Mutation	21	47918525	C	G	32	98
BRCA	TCGA-D8-A1XY	SLC35A2	SNP	Missense_Mutation	23	48761929	G	A	37	30
BRCA	TCGA-D8-A1XY	HRH1	SNP	Missense_Mutation	3	11301339	A	G	8	94
BRCA	TCGA-D8-A1XY	EPHB1	SNP	Silent	3	134825375	G	A	40	37
BRCA	TCGA-D8-A1XY	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A1XY	MCCC1	SNP	Missense_Mutation	3	182810273	C	T	27	75
BRCA	TCGA-D8-A1XY	ATP13A5	DEL	Frame_Shift_Del	3	193068973	AT	-	8	43
BRCA	TCGA-D8-A1XY	LRRC2	SNP	Missense_Mutation	3	46560544	G	A	43	72
BRCA	TCGA-D8-A1XY	UGT8	DEL	Frame_Shift_Del	4	115586882	AT	-	8	58
BRCA	TCGA-D8-A1XY	CAMK4	SNP	Missense_Mutation	5	110679796	A	C	1	83
BRCA	TCGA-D8-A1XY	DAB2	SNP	Silent	5	39383203	G	A	33	84
BRCA	TCGA-D8-A1XY	AP3B1	SNP	Missense_Mutation	5	77511985	C	T	27	100
BRCA	TCGA-D8-A1XY	GUSB	SNP	Missense_Mutation	7	65439687	C	T	31	82
BRCA	TCGA-D8-A1XY	AKAP9	SNP	Missense_Mutation	7	91570457	C	T	26	81
BRCA	TCGA-D8-A1XY	PPP1R26	SNP	Missense_Mutation	9	138378571	C	T	23	75
BRCA	TCGA-D8-A1XY	EHMT1	SNP	Silent	9	140672412	G	A	39	26
BRCA	TCGA-D8-A1XZ	VAV3	DEL	In_Frame_Del	1	108507315	CTC	-	32	82
BRCA	TCGA-D8-A1XZ	HRNR	SNP	Missense_Mutation	1	152187437	A	G	10	45
BRCA	TCGA-D8-A1XZ	CRB1	SNP	Missense_Mutation	1	197326056	C	A	17	77
BRCA	TCGA-D8-A1XZ	MARK1	SNP	Missense_Mutation	1	220791767	C	T	28	100
BRCA	TCGA-D8-A1XZ	RCAN3	SNP	Nonsense_Mutation	1	24857756	C	T	29	99
BRCA	TCGA-D8-A1XZ	OR2G6	SNP	Missense_Mutation	1	248685642	C	T	27	51
BRCA	TCGA-D8-A1XZ	SCMH1	SNP	Silent	1	41512122	G	C	45	54
BRCA	TCGA-D8-A1XZ	ST3GAL3	SNP	Missense_Mutation	1	44363942	G	C	33	66
BRCA	TCGA-D8-A1XZ	NPHP4	SNP	Silent	1	5927909	C	G	29	61
BRCA	TCGA-D8-A1XZ	ZEB1	SNP	Missense_Mutation	10	31809597	A	G	4	41
BRCA	TCGA-D8-A1XZ	TRPC6	SNP	Missense_Mutation	11	101359736	C	T	17	87
BRCA	TCGA-D8-A1XZ	PCSK7	SNP	Silent	11	117097898	G	A	38	41
BRCA	TCGA-D8-A1XZ	DCDC5	SNP	Missense_Mutation	11	30926690	C	A	26	79
BRCA	TCGA-D8-A1XZ	HIPK3	SNP	Missense_Mutation	11	33368958	C	G	29	99
BRCA	TCGA-D8-A1XZ	CCDC60	SNP	Silent	12	119937943	G	A	33	58
BRCA	TCGA-D8-A1XZ	CIT	SNP	Missense_Mutation	12	120287989	G	T	45	62
BRCA	TCGA-D8-A1XZ	GRIN2B	SNP	Missense_Mutation	12	13768551	C	A	22	100
BRCA	TCGA-D8-A1XZ	LUM	SNP	Missense_Mutation	12	91502039	C	T	31	70
BRCA	TCGA-D8-A1XZ	TMCO3	SNP	Missense_Mutation	13	114150035	C	T	23	54
BRCA	TCGA-D8-A1XZ	HSPH1	SNP	Missense_Mutation	13	31722195	G	A	41	99
BRCA	TCGA-D8-A1XZ	DIAPH3	SNP	Missense_Mutation	13	60348934	C	T	30	96
BRCA	TCGA-D8-A1XZ	RTL1	SNP	Missense_Mutation	14	101349520	G	A	39	52
BRCA	TCGA-D8-A1XZ	ADCY4	SNP	Missense_Mutation	14	24788604	G	C	45	61
BRCA	TCGA-D8-A1XZ	PTPN21	SNP	Silent	14	88962792	C	T	27	30
BRCA	TCGA-D8-A1XZ	TRPM1	SNP	Silent	15	31334372	G	A	40	47
BRCA	TCGA-D8-A1XZ	ITGAX	SNP	Missense_Mutation	16	31391336	G	A	38	45
BRCA	TCGA-D8-A1XZ	ZNF423	SNP	Missense_Mutation	16	49669753	C	T	18	60
BRCA	TCGA-D8-A1XZ	FAM83G	SNP	Missense_Mutation	17	18881643	G	A	39	79
BRCA	TCGA-D8-A1XZ	TP53	SNP	Nonsense_Mutation	17	7578431	G	A	48	84
BRCA	TCGA-D8-A1XZ	TUBB6	SNP	Missense_Mutation	18	12325960	G	A	38	100
BRCA	TCGA-D8-A1XZ	MAPK4	SNP	Missense_Mutation	18	48255548	C	T	31	95
BRCA	TCGA-D8-A1XZ	CDH20	SNP	Missense_Mutation	18	59221741	C	T	23	100
BRCA	TCGA-D8-A1XZ	CC2D1A	SNP	Missense_Mutation	19	14031724	G	C	41	82
BRCA	TCGA-D8-A1XZ	ONECUT3	SNP	Missense_Mutation	19	1754710	G	A	48	77
BRCA	TCGA-D8-A1XZ	SUGP1	SNP	Missense_Mutation	19	19407828	C	A	30	60
BRCA	TCGA-D8-A1XZ	THSD7B	SNP	Nonsense_Mutation	2	138208561	C	T	19	75
BRCA	TCGA-D8-A1XZ	LRP1B	SNP	Missense_Mutation	2	141081533	A	G	14	88
BRCA	TCGA-D8-A1XZ	TTN	SNP	Silent	2	179594238	G	A	40	45
BRCA	TCGA-D8-A1XZ	RBM12	SNP	Missense_Mutation	20	34242060	C	T	21	53
BRCA	TCGA-D8-A1XZ	KCNB1	SNP	Missense_Mutation	20	47990860	C	T	19	100
BRCA	TCGA-D8-A1XZ	FAM217B	SNP	Missense_Mutation	20	58519040	G	T	33	50
BRCA	TCGA-D8-A1XZ	SF3A1	SNP	Silent	22	30733776	C	T	27	26
BRCA	TCGA-D8-A1XZ	EP300	SNP	Missense_Mutation	22	41523564	C	T	25	97
BRCA	TCGA-D8-A1XZ	CXorf57	SNP	Missense_Mutation	23	105855472	G	A	47	18
BRCA	TCGA-D8-A1XZ	AVPR2	SNP	Missense_Mutation	23	153171699	C	T	27	49
BRCA	TCGA-D8-A1XZ	NHS	SNP	Silent	23	17744275	G	C	45	60
BRCA	TCGA-D8-A1XZ	USP9X	SNP	Silent	23	41012240	C	T	20	50
BRCA	TCGA-D8-A1XZ	ACRC	SNP	Missense_Mutation	23	70832732	C	T	31	77
BRCA	TCGA-D8-A1XZ	TBX22	SNP	Missense_Mutation	23	79278719	G	T	45	90
BRCA	TCGA-D8-A1XZ	ADCY5	SNP	Missense_Mutation	3	123038594	C	T	28	100
BRCA	TCGA-D8-A1XZ	RHO	SNP	Missense_Mutation	3	129251571	G	A	38	53
BRCA	TCGA-D8-A1XZ	KIAA1239	SNP	Missense_Mutation	4	37448786	C	T	27	62
BRCA	TCGA-D8-A1XZ	FAM13A	SNP	Missense_Mutation	4	89671660	G	A	37	75
BRCA	TCGA-D8-A1XZ	CDH9	SNP	Missense_Mutation	5	26881405	G	A	40	94
BRCA	TCGA-D8-A1XZ	ZBTB2	SNP	Missense_Mutation	6	151687962	A	T	8	93
BRCA	TCGA-D8-A1XZ	HSPA1L	SNP	Missense_Mutation	6	31778018	C	G	31	84
BRCA	TCGA-D8-A1XZ	LRRC1	SNP	Silent	6	53784398	C	T	20	57
BRCA	TCGA-D8-A1XZ	MTO1	SNP	Silent	6	74171766	G	T	46	62
BRCA	TCGA-D8-A1XZ	LCA5	SNP	Nonsense_Mutation	6	80198927	G	A	46	49
BRCA	TCGA-D8-A1XZ	AMPH	SNP	Missense_Mutation	7	38431512	G	A	38	51
BRCA	TCGA-D8-A1XZ	SDC2	SNP	Missense_Mutation	8	97620629	G	A	37	63
BRCA	TCGA-D8-A1XZ	GOLM1	SNP	Missense_Mutation	9	88694123	C	T	23	92
BRCA	TCGA-D8-A1Y0	UBE4B	SNP	Missense_Mutation	1	10163139	A	G	2	78
BRCA	TCGA-D8-A1Y0	MASP2	DEL	In_Frame_Del	1	11097769	GTCTCGCAAAAGATGGAGAAGCTG	-	36	55
BRCA	TCGA-D8-A1Y0	MTOR	SNP	Missense_Mutation	1	11187116	C	A	21	97
BRCA	TCGA-D8-A1Y0	LRIG2	SNP	Missense_Mutation	1	113616189	T	A	55	70
BRCA	TCGA-D8-A1Y0	CACNA1E	SNP	Silent	1	181685255	C	A	32	58
BRCA	TCGA-D8-A1Y0	HIVEP3	SNP	Missense_Mutation	1	42049672	T	C	54	78
BRCA	TCGA-D8-A1Y0	MTF2	SNP	Silent	1	93602437	C	G	29	46
BRCA	TCGA-D8-A1Y0	ADARB2	SNP	Silent	10	1279721	T	C	54	43
BRCA	TCGA-D8-A1Y0	ARID5B	SNP	Missense_Mutation	10	63759999	A	T	7	70
BRCA	TCGA-D8-A1Y0	PCNXL3	SNP	Missense_Mutation	11	65384797	G	C	48	61
BRCA	TCGA-D8-A1Y0	NDUFV1	SNP	Missense_Mutation	11	67377893	G	C	33	50
BRCA	TCGA-D8-A1Y0	MAP6	SNP	Missense_Mutation	11	75298409	C	T	19	44
BRCA	TCGA-D8-A1Y0	PRKRIR	SNP	Nonsense_Mutation	11	76062798	G	A	39	53
BRCA	TCGA-D8-A1Y0	SBNO1	SNP	Missense_Mutation	12	123798175	A	T	1	92
BRCA	TCGA-D8-A1Y0	ADAMTS20	SNP	Silent	12	43833862	G	A	40	49
BRCA	TCGA-D8-A1Y0	NOP2	SNP	Silent	12	6666267	G	C	47	51
BRCA	TCGA-D8-A1Y0	HEATR5A	SNP	Missense_Mutation	14	31792818	T	A	51	89
BRCA	TCGA-D8-A1Y0	SOS2	SNP	Missense_Mutation	14	50605424	T	C	52	92
BRCA	TCGA-D8-A1Y0	SNAPC1	SNP	Missense_Mutation	14	62235358	C	T	29	73
BRCA	TCGA-D8-A1Y0	CDAN1	SNP	Nonsense_Mutation	15	43025328	C	T	21	99
BRCA	TCGA-D8-A1Y0	NOMO2	SNP	Missense_Mutation	16	18544464	G	T	43	85
BRCA	TCGA-D8-A1Y0	MYH8	SNP	Missense_Mutation	17	10298721	A	T	12	69
BRCA	TCGA-D8-A1Y0	RHOT1	SNP	Missense_Mutation	17	30536424	G	C	33	64
BRCA	TCGA-D8-A1Y0	RAD51C	SNP	Missense_Mutation	17	56801450	C	A	18	52
BRCA	TCGA-D8-A1Y0	FCHO1	SNP	Missense_Mutation	19	17887068	C	T	19	78
BRCA	TCGA-D8-A1Y0	KXD1	SNP	Missense_Mutation	19	18679394	A	T	8	49
BRCA	TCGA-D8-A1Y0	ZNF555	SNP	Missense_Mutation	19	2852854	C	G	28	58
BRCA	TCGA-D8-A1Y0	YIF1B	SNP	Silent	19	38798137	G	T	42	54
BRCA	TCGA-D8-A1Y0	ATP1A3	SNP	Silent	19	42492241	G	A	40	51
BRCA	TCGA-D8-A1Y0	NKPD1	SNP	Silent	19	45662102	G	A	41	56
BRCA	TCGA-D8-A1Y0	PTGIR	SNP	Silent	19	47124648	C	A	23	19
BRCA	TCGA-D8-A1Y0	PLCL1	SNP	Missense_Mutation	2	198950898	T	A	50	79
BRCA	TCGA-D8-A1Y0	OTOF	SNP	Silent	2	26739336	G	A	41	48
BRCA	TCGA-D8-A1Y0	GFPT1	SNP	Missense_Mutation	2	69569326	C	G	29	55
BRCA	TCGA-D8-A1Y0	NINL	SNP	Missense_Mutation	20	25481635	C	G	32	63
BRCA	TCGA-D8-A1Y0	CEP250	SNP	Missense_Mutation	20	34091216	G	T	33	47
BRCA	TCGA-D8-A1Y0	TAF4	SNP	Missense_Mutation	20	60581738	G	A	39	71
BRCA	TCGA-D8-A1Y0	PSMA7	SNP	Silent	20	60714888	C	T	24	64
BRCA	TCGA-D8-A1Y0	ABCG1	SNP	Silent	21	43645822	G	A	39	23
BRCA	TCGA-D8-A1Y0	NUP210	SNP	Missense_Mutation	3	13364839	C	T	25	46
BRCA	TCGA-D8-A1Y0	FAM43A	SNP	Missense_Mutation	3	194408538	G	A	42	67
BRCA	TCGA-D8-A1Y0	ZNF619	SNP	Missense_Mutation	3	40528692	C	T	26	72
BRCA	TCGA-D8-A1Y0	ADH5	SNP	Missense_Mutation	4	100003129	C	T	26	51
BRCA	TCGA-D8-A1Y0	ZNF518B	SNP	Missense_Mutation	4	10446040	G	C	33	86
BRCA	TCGA-D8-A1Y0	USP53	SNP	Missense_Mutation	4	120213924	A	T	3	77
BRCA	TCGA-D8-A1Y0	SORBS2	SNP	Missense_Mutation	4	186545132	T	C	57	76
BRCA	TCGA-D8-A1Y0	RBM47	DEL	In_Frame_Del	4	40434705	GCGGCTGCGGCGGCTGCGGCC	-	34	70
BRCA	TCGA-D8-A1Y0	SPATA18	SNP	Missense_Mutation	4	52951104	G	T	36	44
BRCA	TCGA-D8-A1Y0	SEC24A	SNP	Silent	5	133997101	C	A	21	49
BRCA	TCGA-D8-A1Y0	PCDHA9	SNP	Missense_Mutation	5	140230345	G	T	42	51
BRCA	TCGA-D8-A1Y0	PCDHB11	SNP	Missense_Mutation	5	140580879	G	C	42	89
BRCA	TCGA-D8-A1Y0	SLC1A3	SNP	Nonsense_Mutation	5	36608580	C	T	21	81
BRCA	TCGA-D8-A1Y0	ARSK	DEL	Frame_Shift_Del	5	94922376	AGAAATTAAGAATATT	-	3	54
BRCA	TCGA-D8-A1Y0	ELL2	SNP	Missense_Mutation	5	95242412	T	C	51	76
BRCA	TCGA-D8-A1Y0	C7orf63	SNP	Nonsense_Mutation	7	89933315	G	T	33	70
BRCA	TCGA-D8-A1Y0	HHLA1	SNP	Silent	8	133083697	A	C	11	50
BRCA	TCGA-D8-A1Y0	PLEC	SNP	Missense_Mutation	8	145006612	T	C	54	74
BRCA	TCGA-D8-A1Y0	KCNB2	SNP	Silent	8	73848355	A	G	6	47
BRCA	TCGA-D8-A1Y0	TBC1D2	SNP	Silent	9	101006299	G	C	45	54
BRCA	TCGA-D8-A1Y0	ZNF658	SNP	Missense_Mutation	9	40774928	T	G	55	56
BRCA	TCGA-D8-A1Y1	TRMT13	SNP	Missense_Mutation	1	100606429	G	A	45	91
BRCA	TCGA-D8-A1Y1	TDRD10	SNP	Silent	1	154516982	C	T	19	45
BRCA	TCGA-D8-A1Y1	MEF2D	SNP	Splice_site	1	156437437	T	C	58	62
BRCA	TCGA-D8-A1Y1	FCRL5	SNP	Missense_Mutation	1	157504569	G	C	47	40
BRCA	TCGA-D8-A1Y1	CASP9	SNP	Silent	1	15831197	C	T	23	24
BRCA	TCGA-D8-A1Y1	CRP	SNP	Missense_Mutation	1	159683727	T	C	50	18
BRCA	TCGA-D8-A1Y1	ATP1A4	SNP	Silent	1	160143454	G	C	39	43
BRCA	TCGA-D8-A1Y1	RGS16	SNP	Missense_Mutation	1	182572462	G	C	45	61
BRCA	TCGA-D8-A1Y1	HMCN1	SNP	Silent	1	186034377	A	G	7	49
BRCA	TCGA-D8-A1Y1	CFH	SNP	Silent	1	196659317	A	G	7	42
BRCA	TCGA-D8-A1Y1	AVPR1B	SNP	Missense_Mutation	1	206224826	C	T	19	85
BRCA	TCGA-D8-A1Y1	PLXNA2	SNP	Missense_Mutation	1	208227774	T	C	59	74
BRCA	TCGA-D8-A1Y1	EIF4G3	SNP	Missense_Mutation	1	21299568	G	A	39	97
BRCA	TCGA-D8-A1Y1	TMEM63A	SNP	Missense_Mutation	1	226041376	C	T	27	100
BRCA	TCGA-D8-A1Y1	GUK1	SNP	Silent	1	228335369	G	A	42	55
BRCA	TCGA-D8-A1Y1	OBSCN	SNP	Missense_Mutation	1	228497221	G	A	40	70
BRCA	TCGA-D8-A1Y1	PCNXL2	SNP	Missense_Mutation	1	233393833	G	A	40	45
BRCA	TCGA-D8-A1Y1	KCNK1	SNP	Missense_Mutation	1	233802463	G	A	40	69
BRCA	TCGA-D8-A1Y1	AHCTF1	SNP	Silent	1	247053342	T	C	63	53
BRCA	TCGA-D8-A1Y1	SRSF11	SNP	Missense_Mutation	1	70701196	G	A	33	97
BRCA	TCGA-D8-A1Y1	C1orf173	SNP	Missense_Mutation	1	75036916	G	A	38	47
BRCA	TCGA-D8-A1Y1	DPYD	SNP	Silent	1	98058912	C	T	31	55
BRCA	TCGA-D8-A1Y1	PNLIPRP1	SNP	Silent	10	118351338	C	T	27	44
BRCA	TCGA-D8-A1Y1	OPTN	SNP	Silent	10	13169759	C	T	17	46
BRCA	TCGA-D8-A1Y1	MTG1	SNP	Missense_Mutation	10	135233665	C	A	22	53
BRCA	TCGA-D8-A1Y1	SFMBT2	SNP	Missense_Mutation	10	7218087	G	A	40	85
BRCA	TCGA-D8-A1Y1	MARCH5	SNP	Missense_Mutation	10	94109244	C	T	27	83
BRCA	TCGA-D8-A1Y1	ZBTB16	SNP	Silent	11	113935219	C	T	26	77
BRCA	TCGA-D8-A1Y1	GLB1L2	SNP	Missense_Mutation	11	134244521	T	C	50	86
BRCA	TCGA-D8-A1Y1	ALX4	SNP	Missense_Mutation	11	44289156	C	T	31	99
BRCA	TCGA-D8-A1Y1	KBTBD4	SNP	Silent	11	47599060	C	A	23	44
BRCA	TCGA-D8-A1Y1	SERPING1	SNP	Missense_Mutation	11	57373624	G	A	39	49
BRCA	TCGA-D8-A1Y1	FADS2	SNP	Silent	11	61607877	C	T	19	49
BRCA	TCGA-D8-A1Y1	MARK2	SNP	Missense_Mutation	11	63670145	G	A	39	79
BRCA	TCGA-D8-A1Y1	PLCB3	SNP	Missense_Mutation	11	64032862	C	T	27	54
BRCA	TCGA-D8-A1Y1	DLG2	SNP	Splice_site	11	83195172	G	A	40	97
BRCA	TCGA-D8-A1Y1	FAT3	SNP	Silent	11	92088560	C	T	19	46
BRCA	TCGA-D8-A1Y1	SVOP	SNP	Silent	12	109311864	C	T	19	51
BRCA	TCGA-D8-A1Y1	WDR66	SNP	Missense_Mutation	12	122413586	G	A	33	70
BRCA	TCGA-D8-A1Y1	TMEM132C	SNP	Missense_Mutation	12	128899747	C	T	23	60
BRCA	TCGA-D8-A1Y1	EP400	SNP	Missense_Mutation	12	132474593	C	T	27	85
BRCA	TCGA-D8-A1Y1	ANKLE2	SNP	Missense_Mutation	12	133324459	G	A	39	56
BRCA	TCGA-D8-A1Y1	GRIN2B	SNP	Silent	12	13724845	G	A	40	50
BRCA	TCGA-D8-A1Y1	KIAA0528	SNP	Missense_Mutation	12	22677460	G	A	37	71
BRCA	TCGA-D8-A1Y1	ITFG2	SNP	Silent	12	2929346	G	A	45	50
BRCA	TCGA-D8-A1Y1	KRT7	SNP	Missense_Mutation	12	52631316	G	A	38	86
BRCA	TCGA-D8-A1Y1	SDR9C7	SNP	Missense_Mutation	12	57323335	C	T	19	73
BRCA	TCGA-D8-A1Y1	GRIP1	SNP	Missense_Mutation	12	66932939	G	A	39	74
BRCA	TCGA-D8-A1Y1	PSPC1	SNP	Missense_Mutation	13	20315754	C	T	30	100
BRCA	TCGA-D8-A1Y1	ATP7B	SNP	Missense_Mutation	13	52539048	G	A	39	79
BRCA	TCGA-D8-A1Y1	DNAJC3	SNP	Missense_Mutation	13	96443192	G	A	39	64
BRCA	TCGA-D8-A1Y1	IGHD	DEL	Silent	14	106307559	CT	-	20	45
BRCA	TCGA-D8-A1Y1	RPGRIP1	SNP	Missense_Mutation	14	21789487	G	A	38	74
BRCA	TCGA-D8-A1Y1	PPP2R3C	SNP	Missense_Mutation	14	35568559	G	T	35	84
BRCA	TCGA-D8-A1Y1	CCDC88C	SNP	Silent	14	91780360	C	T	23	16
BRCA	TCGA-D8-A1Y1	OR4F6	SNP	Missense_Mutation	15	102345983	C	T	27	51
BRCA	TCGA-D8-A1Y1	TRPM1	SNP	Splice_site	15	31323186	G	A	39	99
BRCA	TCGA-D8-A1Y1	HERC1	SNP	Missense_Mutation	15	63908694	C	T	19	99
BRCA	TCGA-D8-A1Y1	TXNDC11	DEL	Frame_Shift_Del	16	11773171	CT	-	24	58
BRCA	TCGA-D8-A1Y1	TPSAB1	SNP	Silent	16	1291621	C	T	29	50
BRCA	TCGA-D8-A1Y1	TPSD1	SNP	Missense_Mutation	16	1307051	G	A	40	56
BRCA	TCGA-D8-A1Y1	MKL2	SNP	Missense_Mutation	16	14354864	C	T	23	70
BRCA	TCGA-D8-A1Y1	HAGH	SNP	Silent	16	1869958	G	A	40	46
BRCA	TCGA-D8-A1Y1	ACSM2A	SNP	Splice_site	16	20487095	G	A	39	52
BRCA	TCGA-D8-A1Y1	PRR14	SNP	Nonsense_Mutation	16	30664308	C	T	27	49
BRCA	TCGA-D8-A1Y1	C16orf5	SNP	Silent	16	4562821	G	A	37	45
BRCA	TCGA-D8-A1Y1	TOX3	SNP	Missense_Mutation	16	52484428	G	A	39	75
BRCA	TCGA-D8-A1Y1	MT1M	SNP	Silent	16	56667262	C	T	27	54
BRCA	TCGA-D8-A1Y1	CDH1	SNP	Splice_Site	16	68856129	G	T	36	95
BRCA	TCGA-D8-A1Y1	ZFHX3	DEL	Frame_Shift_Del	16	72830903	CT	-	24	64
BRCA	TCGA-D8-A1Y1	CHST5	SNP	Missense_Mutation	16	75563057	G	A	37	70
BRCA	TCGA-D8-A1Y1	ZNF469	DEL	In_Frame_Del	16	88501554	AGG	-	3	47
BRCA	TCGA-D8-A1Y1	MYH3	SNP	Missense_Mutation	17	10544483	C	T	23	100
BRCA	TCGA-D8-A1Y1	PLD6	SNP	Silent	17	17106258	G	A	40	46
BRCA	TCGA-D8-A1Y1	NOS2	SNP	Missense_Mutation	17	26107923	C	T	31	66
BRCA	TCGA-D8-A1Y1	FLOT2	SNP	Missense_Mutation	17	27216012	C	T	19	86
BRCA	TCGA-D8-A1Y1	MYO18A	SNP	Missense_Mutation	17	27420379	G	A	38	59
BRCA	TCGA-D8-A1Y1	TMIGD1	DEL	Frame_Shift_Del	17	28645921	CA	-	21	43
BRCA	TCGA-D8-A1Y1	DNAJC7	SNP	Missense_Mutation	17	40134299	C	T	23	86
BRCA	TCGA-D8-A1Y1	AOC3	SNP	Missense_Mutation	17	41006560	C	T	23	53
BRCA	TCGA-D8-A1Y1	MEOX1	SNP	Missense_Mutation	17	41738729	C	T	19	35
BRCA	TCGA-D8-A1Y1	UBTF	SNP	Missense_Mutation	17	42287046	A	G	8	91
BRCA	TCGA-D8-A1Y1	EPX	SNP	Missense_Mutation	17	56276490	C	T	19	49
BRCA	TCGA-D8-A1Y1	TANC2	SNP	Missense_Mutation	17	61396410	C	T	27	80
BRCA	TCGA-D8-A1Y1	ACE	SNP	Silent	17	61557230	C	T	19	55
BRCA	TCGA-D8-A1Y1	ABCA10	SNP	Nonsense_Mutation	17	67183897	C	T	21	78
BRCA	TCGA-D8-A1Y1	SLC35G6	SNP	Splice_site	17	7385307	G	A	42	57
BRCA	TCGA-D8-A1Y1	KCNAB3	SNP	Missense_Mutation	17	7828433	G	T	43	69
BRCA	TCGA-D8-A1Y1	LOXHD1	SNP	Missense_Mutation	18	44139503	C	T	19	100
BRCA	TCGA-D8-A1Y1	ATP8B1	SNP	Silent	18	55355712	A	G	10	51
BRCA	TCGA-D8-A1Y1	MC4R	SNP	Missense_Mutation	18	58039219	C	T	29	97
BRCA	TCGA-D8-A1Y1	LRRC30	SNP	Missense_Mutation	18	7231524	A	G	10	56
BRCA	TCGA-D8-A1Y1	C19orf6	SNP	Missense_Mutation	19	1014378	C	T	19	90
BRCA	TCGA-D8-A1Y1	ICAM3	SNP	Missense_Mutation	19	10445930	G	A	45	51
BRCA	TCGA-D8-A1Y1	ICAM3	SNP	Nonsense_Mutation	19	10449539	A	T	14	42
BRCA	TCGA-D8-A1Y1	C19orf35	SNP	Silent	19	2280862	C	T	19	32
BRCA	TCGA-D8-A1Y1	KIRREL2	SNP	Silent	19	36357343	A	G	8	35
BRCA	TCGA-D8-A1Y1	PAPL	SNP	Missense_Mutation	19	39591673	G	A	37	97
BRCA	TCGA-D8-A1Y1	CCDC97	SNP	Missense_Mutation	19	41825700	G	C	41	93
BRCA	TCGA-D8-A1Y1	EML2	SNP	Nonsense_Mutation	19	46130077	C	T	21	56
BRCA	TCGA-D8-A1Y1	EHD2	SNP	Nonsense_Mutation	19	48229479	C	T	27	64
BRCA	TCGA-D8-A1Y1	HRC	SNP	Missense_Mutation	19	49656895	C	T	30	64
BRCA	TCGA-D8-A1Y1	MED25	SNP	Missense_Mutation	19	50335233	C	T	19	80
BRCA	TCGA-D8-A1Y1	VRK3	SNP	Missense_Mutation	19	50519394	C	T	26	73
BRCA	TCGA-D8-A1Y1	KLK1	INS	Frame_Shift_Ins	19	51323226	-	T	28	56
BRCA	TCGA-D8-A1Y1	NLRP2	SNP	Nonsense_Mutation	19	55494672	C	T	17	51
BRCA	TCGA-D8-A1Y1	SLC5A7	DEL	In_Frame_Del	2	108614339	TCA	-	58	91
BRCA	TCGA-D8-A1Y1	KCNF1	SNP	Silent	2	11053665	C	T	31	38
BRCA	TCGA-D8-A1Y1	CCDC74A	SNP	Missense_Mutation	2	132290278	G	A	37	54
BRCA	TCGA-D8-A1Y1	LCT	SNP	Missense_Mutation	2	136564955	C	T	31	100
BRCA	TCGA-D8-A1Y1	ZEB2	DEL	In_Frame_Del	2	145147249	CTT	-	24	85
BRCA	TCGA-D8-A1Y1	PXDN	SNP	Silent	2	1653368	G	A	38	47
BRCA	TCGA-D8-A1Y1	TFPI	SNP	Missense_Mutation	2	188332651	C	T	23	53
BRCA	TCGA-D8-A1Y1	TNS1	SNP	Missense_Mutation	2	218682600	G	T	42	63
BRCA	TCGA-D8-A1Y1	EIF4E2	SNP	Missense_Mutation	2	233431669	C	T	28	83
BRCA	TCGA-D8-A1Y1	ZNF512	SNP	Missense_Mutation	2	27838044	A	G	14	61
BRCA	TCGA-D8-A1Y1	BRE	SNP	Splice_Site	2	28464261	G	A	40	98
BRCA	TCGA-D8-A1Y1	JAG1	SNP	Splice_Site	20	10644610	C	T	19	97
BRCA	TCGA-D8-A1Y1	C20orf112	SNP	Missense_Mutation	20	31041163	G	A	38	96
BRCA	TCGA-D8-A1Y1	PCNT	SNP	Missense_Mutation	21	47786639	C	T	27	52
BRCA	TCGA-D8-A1Y1	AP1B1	SNP	Missense_Mutation	22	29726657	C	T	29	95
BRCA	TCGA-D8-A1Y1	CPT1B	SNP	Silent	22	51015421	G	A	46	57
BRCA	TCGA-D8-A1Y1	TCEAL6	SNP	Missense_Mutation	23	101396134	T	G	54	64
BRCA	TCGA-D8-A1Y1	TLR7	SNP	Missense_Mutation	23	12906029	C	T	19	99
BRCA	TCGA-D8-A1Y1	L1CAM	SNP	Missense_Mutation	23	153133791	C	T	23	74
BRCA	TCGA-D8-A1Y1	RAB39B	SNP	Silent	23	154493388	G	A	33	88
BRCA	TCGA-D8-A1Y1	FAM47C	SNP	Silent	23	37026807	G	A	38	23
BRCA	TCGA-D8-A1Y1	NIT2	SNP	Silent	3	100058788	C	T	24	50
BRCA	TCGA-D8-A1Y1	ZBTB20	SNP	Missense_Mutation	3	114057923	C	T	19	100
BRCA	TCGA-D8-A1Y1	ABTB1	SNP	Silent	3	127395142	C	T	19	50
BRCA	TCGA-D8-A1Y1	DNAJC13	SNP	Silent	3	132153451	A	G	8	49
BRCA	TCGA-D8-A1Y1	HDAC11	SNP	Silent	3	13546039	C	A	24	46
BRCA	TCGA-D8-A1Y1	GMPS	SNP	Missense_Mutation	3	155652811	G	C	42	100
BRCA	TCGA-D8-A1Y1	PIK3CA	SNP	Silent	3	178916823	C	T	31	57
BRCA	TCGA-D8-A1Y1	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-D8-A1Y1	IL1RAP	SNP	Missense_Mutation	3	190373953	C	T	27	45
BRCA	TCGA-D8-A1Y1	XIRP1	SNP	Missense_Mutation	3	39227618	C	A	22	56
BRCA	TCGA-D8-A1Y1	RAD54L2	SNP	Missense_Mutation	3	51673633	G	A	40	72
BRCA	TCGA-D8-A1Y1	CCDC66	SNP	Missense_Mutation	3	56650033	A	G	14	52
BRCA	TCGA-D8-A1Y1	CAV3	SNP	Silent	3	8787229	G	A	45	77
BRCA	TCGA-D8-A1Y1	ANK2	SNP	Missense_Mutation	4	114251533	G	A	38	100
BRCA	TCGA-D8-A1Y1	KIAA1109	SNP	Nonsense_Mutation	4	123168476	C	T	31	87
BRCA	TCGA-D8-A1Y1	GRXCR1	SNP	Missense_Mutation	4	42895323	C	T	19	58
BRCA	TCGA-D8-A1Y1	ZAR1	SNP	Missense_Mutation	4	48496158	G	A	38	84
BRCA	TCGA-D8-A1Y1	LPHN3	SNP	Missense_Mutation	4	62813942	C	T	32	100
BRCA	TCGA-D8-A1Y1	MAN2B2	SNP	Silent	4	6578364	C	T	27	47
BRCA	TCGA-D8-A1Y1	UGT2A1	SNP	Silent	4	70462045	G	A	33	56
BRCA	TCGA-D8-A1Y1	MRPS18C	DEL	In_Frame_Del	4	84377269	GAA	-	41	57
BRCA	TCGA-D8-A1Y1	DCP2	SNP	Nonsense_Mutation	5	112321590	C	T	29	97
BRCA	TCGA-D8-A1Y1	YTHDC2	SNP	Missense_Mutation	5	112926754	C	T	31	74
BRCA	TCGA-D8-A1Y1	HSD17B4	SNP	Missense_Mutation	5	118835030	A	G	9	60
BRCA	TCGA-D8-A1Y1	PCDHA4	SNP	Missense_Mutation	5	140188906	G	A	44	58
BRCA	TCGA-D8-A1Y1	PCDHGA4	SNP	Missense_Mutation	5	140735488	G	A	40	56
BRCA	TCGA-D8-A1Y1	PCDHGA7	SNP	Silent	5	140764797	C	T	17	48
BRCA	TCGA-D8-A1Y1	PCDHGA10	SNP	Missense_Mutation	5	140793061	G	A	40	56
BRCA	TCGA-D8-A1Y1	RNF14	SNP	Silent	5	141359789	G	A	40	40
BRCA	TCGA-D8-A1Y1	LSM11	SNP	Missense_Mutation	5	157182096	C	T	19	66
BRCA	TCGA-D8-A1Y1	C1QTNF2	SNP	Silent	5	159776463	G	A	38	41
BRCA	TCGA-D8-A1Y1	RARS	SNP	Missense_Mutation	5	167946113	G	A	40	75
BRCA	TCGA-D8-A1Y1	UBTD2	SNP	Missense_Mutation	5	171638974	G	A	44	81
BRCA	TCGA-D8-A1Y1	OR2V1	INS	Frame_Shift_Ins	5	180551593	-	T	28	72
BRCA	TCGA-D8-A1Y1	PDZD2	SNP	Missense_Mutation	5	32090758	G	A	37	86
BRCA	TCGA-D8-A1Y1	TTC23L	SNP	Silent	5	34867123	G	A	33	58
BRCA	TCGA-D8-A1Y1	EGFLAM	SNP	Missense_Mutation	5	38438425	G	A	39	85
BRCA	TCGA-D8-A1Y1	BDP1	SNP	Nonsense_Mutation	5	70858270	C	T	31	52
BRCA	TCGA-D8-A1Y1	AKD1	SNP	Missense_Mutation	6	109906406	C	G	32	53
BRCA	TCGA-D8-A1Y1	CEP85L	SNP	Missense_Mutation	6	118886832	C	T	19	79
BRCA	TCGA-D8-A1Y1	TRIM38	SNP	Silent	6	25983774	G	A	35	62
BRCA	TCGA-D8-A1Y1	MRPS18B	SNP	Silent	6	30587733	C	T	32	64
BRCA	TCGA-D8-A1Y1	RDBP	SNP	Silent	6	31922402	T	C	54	39
BRCA	TCGA-D8-A1Y1	RPP40	SNP	Missense_Mutation	6	4996460	C	T	31	47
BRCA	TCGA-D8-A1Y1	SPACA1	SNP	Missense_Mutation	6	88773880	T	C	49	55
BRCA	TCGA-D8-A1Y1	CNR1	SNP	Silent	6	88854514	C	T	23	9
BRCA	TCGA-D8-A1Y1	TRIM56	SNP	Missense_Mutation	7	100732127	G	A	39	64
BRCA	TCGA-D8-A1Y1	ARHGEF5	SNP	Missense_Mutation	7	144068342	G	A	39	56
BRCA	TCGA-D8-A1Y1	PCLO	DEL	In_Frame_Del	7	82595175	TCT	-	50	55
BRCA	TCGA-D8-A1Y1	MCM7	SNP	Silent	7	99697274	G	A	38	78
BRCA	TCGA-D8-A1Y1	RAD21	SNP	Missense_Mutation	8	117866515	G	C	34	100
BRCA	TCGA-D8-A1Y1	TAF2	SNP	Silent	8	120774729	G	A	45	41
BRCA	TCGA-D8-A1Y1	WDR67	SNP	Missense_Mutation	8	124105925	A	G	5	90
BRCA	TCGA-D8-A1Y1	ZNF572	INS	Frame_Shift_Ins	8	125987892	-	A	33	51
BRCA	TCGA-D8-A1Y1	NAPRT1	SNP	Silent	8	144658676	G	A	38	23
BRCA	TCGA-D8-A1Y1	EPPK1	SNP	Nonsense_Mutation	8	144941901	G	A	46	59
BRCA	TCGA-D8-A1Y1	TRIM35	SNP	Missense_Mutation	8	27151640	C	T	23	65
BRCA	TCGA-D8-A1Y1	PPP2CB	SNP	Missense_Mutation	8	30648767	C	T	19	86
BRCA	TCGA-D8-A1Y1	SGK196	SNP	Silent	8	42977594	G	A	37	63
BRCA	TCGA-D8-A1Y1	CSPP1	SNP	Missense_Mutation	8	68089932	C	A	22	55
BRCA	TCGA-D8-A1Y1	OR13C4	SNP	Missense_Mutation	9	107289169	C	A	22	87
BRCA	TCGA-D8-A1Y1	PRPF4	SNP	Silent	9	116053923	C	T	28	82
BRCA	TCGA-D8-A1Y1	PAPPA	SNP	Missense_Mutation	9	118950410	C	T	19	63
BRCA	TCGA-D8-A1Y1	ADAMTS13	SNP	Missense_Mutation	9	136307529	C	T	27	63
BRCA	TCGA-D8-A1Y1	GNA14	SNP	Missense_Mutation	9	80040546	T	A	60	92
BRCA	TCGA-D8-A1Y2	OR10Z1	SNP	Missense_Mutation	1	158576343	C	G	32	53
BRCA	TCGA-D8-A1Y2	SHISA4	SNP	Missense_Mutation	1	201859604	G	A	38	91
BRCA	TCGA-D8-A1Y2	SPATA17	SNP	Missense_Mutation	1	217955553	G	A	38	87
BRCA	TCGA-D8-A1Y2	GPR3	SNP	Missense_Mutation	1	27721113	G	A	45	100
BRCA	TCGA-D8-A1Y2	C1orf173	SNP	Missense_Mutation	1	75055486	G	A	33	54
BRCA	TCGA-D8-A1Y2	KIF20B	INS	Frame_Shift_Ins	10	91497663	-	A	21	51
BRCA	TCGA-D8-A1Y2	DYNC1H1	SNP	Missense_Mutation	14	102449530	G	A	40	100
BRCA	TCGA-D8-A1Y2	MAP4K5	SNP	Missense_Mutation	14	50915497	C	T	29	81
BRCA	TCGA-D8-A1Y2	ATXN2L	SNP	Silent	16	28847726	G	T	38	64
BRCA	TCGA-D8-A1Y2	RARA	SNP	Missense_Mutation	17	38510603	T	C	62	76
BRCA	TCGA-D8-A1Y2	TUBG1	SNP	Missense_Mutation	17	40762203	G	A	37	98
BRCA	TCGA-D8-A1Y2	FAM69C	SNP	Missense_Mutation	18	72114301	C	A	26	49
BRCA	TCGA-D8-A1Y2	EHD2	SNP	Silent	19	48239730	G	C	37	42
BRCA	TCGA-D8-A1Y2	KLK3	SNP	Silent	19	51361806	C	T	29	52
BRCA	TCGA-D8-A1Y2	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A1Y2	ITPR1	SNP	Missense_Mutation	3	4847896	A	G	16	91
BRCA	TCGA-D8-A1Y2	KDM3B	SNP	Missense_Mutation	5	137766020	G	A	40	100
BRCA	TCGA-D8-A1Y2	ARAP3	SNP	Silent	5	141049557	G	A	45	56
BRCA	TCGA-D8-A1Y2	RTN4IP1	SNP	Silent	6	107070756	C	A	22	53
BRCA	TCGA-D8-A1Y2	ACO1	SNP	Missense_Mutation	9	32436286	G	T	37	87
BRCA	TCGA-D8-A1Y3	AMY1A	SNP	Missense_Mutation	1	104203222	T	A	64	64
BRCA	TCGA-D8-A1Y3	ILF2	SNP	Missense_Mutation	1	153636538	G	A	43	79
BRCA	TCGA-D8-A1Y3	PLD5	SNP	Missense_Mutation	1	242253225	G	T	45	71
BRCA	TCGA-D8-A1Y3	DPCD	SNP	Missense_Mutation	10	103360972	C	T	27	65
BRCA	TCGA-D8-A1Y3	CUBN	SNP	Silent	10	16945996	G	A	48	48
BRCA	TCGA-D8-A1Y3	APBB1IP	SNP	Missense_Mutation	10	26825123	T	A	61	93
BRCA	TCGA-D8-A1Y3	FBXO18	SNP	Splice_site	10	5951018	G	A	39	75
BRCA	TCGA-D8-A1Y3	LIPF	SNP	Missense_Mutation	10	90427417	A	G	16	75
BRCA	TCGA-D8-A1Y3	LIPN	SNP	Missense_Mutation	10	90524285	G	T	41	95
BRCA	TCGA-D8-A1Y3	NPAT	SNP	Missense_Mutation	11	108059913	C	T	31	61
BRCA	TCGA-D8-A1Y3	OR56A4	SNP	Silent	11	6024337	C	T	24	36
BRCA	TCGA-D8-A1Y3	NRXN2	SNP	Silent	11	64416348	A	G	16	46
BRCA	TCGA-D8-A1Y3	SRRM4	SNP	Missense_Mutation	12	119591417	C	T	23	77
BRCA	TCGA-D8-A1Y3	VPS33A	SNP	Missense_Mutation	12	122720362	G	A	40	82
BRCA	TCGA-D8-A1Y3	DUSP16	SNP	Missense_Mutation	12	12640024	G	A	35	99
BRCA	TCGA-D8-A1Y3	CACNA1C	SNP	Missense_Mutation	12	2795355	G	C	41	95
BRCA	TCGA-D8-A1Y3	PTPRB	SNP	Silent	12	70974895	G	A	39	21
BRCA	TCGA-D8-A1Y3	SPRY2	SNP	Missense_Mutation	13	80910967	G	A	39	83
BRCA	TCGA-D8-A1Y3	CKB	SNP	Silent	14	103988690	C	T	27	48
BRCA	TCGA-D8-A1Y3	KIAA1737	SNP	Missense_Mutation	14	77580648	A	C	6	59
BRCA	TCGA-D8-A1Y3	THBS1	DEL	In_Frame_Del	15	39874617	GAA	-	45	66
BRCA	TCGA-D8-A1Y3	TICRR	SNP	Missense_Mutation	15	90167690	A	C	2	54
BRCA	TCGA-D8-A1Y3	USP32	SNP	Silent	17	58275761	G	A	47	75
BRCA	TCGA-D8-A1Y3	PPM1D	SNP	Missense_Mutation	17	58725291	G	A	48	82
BRCA	TCGA-D8-A1Y3	TP53	SNP	Nonsense_Mutation	17	7578212	G	A	37	66
BRCA	TCGA-D8-A1Y3	ATP13A1	SNP	Missense_Mutation	19	19766896	T	C	51	70
BRCA	TCGA-D8-A1Y3	ZNF90	SNP	Missense_Mutation	19	20228629	A	G	7	54
BRCA	TCGA-D8-A1Y3	SIRT2	SNP	Missense_Mutation	19	39369929	G	A	39	58
BRCA	TCGA-D8-A1Y3	ZNF414	SNP	Missense_Mutation	19	8577364	C	T	27	59
BRCA	TCGA-D8-A1Y3	EIF5B	SNP	Silent	2	99988165	T	A	53	50
BRCA	TCGA-D8-A1Y3	MC3R	SNP	Silent	20	54824328	C	T	19	65
BRCA	TCGA-D8-A1Y3	TAF4	SNP	Silent	20	60578311	G	C	39	32
BRCA	TCGA-D8-A1Y3	C2CD2	SNP	Missense_Mutation	21	43338233	G	A	40	41
BRCA	TCGA-D8-A1Y3	SCN11A	SNP	Missense_Mutation	3	38892206	T	C	56	55
BRCA	TCGA-D8-A1Y3	ULK4	SNP	Missense_Mutation	3	41938435	G	A	37	59
BRCA	TCGA-D8-A1Y3	SLC7A11	SNP	Missense_Mutation	4	139144461	T	G	64	71
BRCA	TCGA-D8-A1Y3	DCHS2	SNP	Missense_Mutation	4	155242117	T	A	54	50
BRCA	TCGA-D8-A1Y3	TRIM61	SNP	Silent	4	165890903	T	C	62	52
BRCA	TCGA-D8-A1Y3	KLHL8	SNP	Nonsense_Mutation	4	88106441	G	A	45	86
BRCA	TCGA-D8-A1Y3	GRIA1	SNP	Missense_Mutation	5	153026664	C	G	24	99
BRCA	TCGA-D8-A1Y3	NADKD1	SNP	Missense_Mutation	5	36195293	T	C	50	62
BRCA	TCGA-D8-A1Y3	CAP2	SNP	Silent	6	17539526	G	A	40	39
BRCA	TCGA-D8-A1Y3	FAM8A1	SNP	Missense_Mutation	6	17608448	A	C	5	90
BRCA	TCGA-D8-A1Y3	KIFC1	SNP	Missense_Mutation	6	33372827	C	T	22	76
BRCA	TCGA-D8-A1Y3	MTCH1	SNP	Missense_Mutation	6	36940433	A	C	9	63
BRCA	TCGA-D8-A1Y3	KCNK5	SNP	Silent	6	39162069	G	A	38	38
BRCA	TCGA-D8-A1Y3	TREML1	SNP	Missense_Mutation	6	41122014	G	C	35	65
BRCA	TCGA-D8-A1Y3	MUC12	SNP	Missense_Mutation	7	100637521	C	G	17	60
BRCA	TCGA-D8-A1Y3	WRN	SNP	Missense_Mutation	8	30958371	C	T	19	90
BRCA	TCGA-D8-A1Y3	RAB14	SNP	Silent	9	123943767	A	G	7	48
BRCA	TCGA-D8-A1Y3	DOCK8	SNP	Missense_Mutation	9	420960	T	A	60	60
BRCA	TCGA-D8-A1Y3	ERMP1	SNP	Missense_Mutation	9	5830922	C	G	20	50
BRCA	TCGA-D8-A1Y3	AGTPBP1	SNP	Missense_Mutation	9	88204545	G	A	37	75
BRCA	TCGA-D8-A27E	CDK10	SNP	Missense_Mutation	16	89762012	C	A	23	92
BRCA	TCGA-D8-A27E	MYO5B	SNP	Missense_Mutation	18	47480795	C	A	30	97
BRCA	TCGA-D8-A27E	CEACAM19	SNP	Missense_Mutation	19	45175930	C	G	30	70
BRCA	TCGA-D8-A27E	ZNF324	SNP	Missense_Mutation	19	58982851	A	G	6	72
BRCA	TCGA-D8-A27E	MZF1	INS	In_Frame_Ins	19	59073812	-	TGAGGCGCTGGC	56	61
BRCA	TCGA-D8-A27E	PCED1A	SNP	Missense_Mutation	20	2820525	G	A	39	59
BRCA	TCGA-D8-A27E	C21orf56	SNP	Missense_Mutation	21	47602541	C	T	23	56
BRCA	TCGA-D8-A27E	COL6A6	SNP	Missense_Mutation	3	130383928	G	A	37	42
BRCA	TCGA-D8-A27E	OTUD4	SNP	Missense_Mutation	4	146058902	C	T	26	62
BRCA	TCGA-D8-A27E	MAPK14	SNP	Missense_Mutation	6	36041850	G	A	48	87
BRCA	TCGA-D8-A27E	ASZ1	SNP	Missense_Mutation	7	117022190	G	C	48	69
BRCA	TCGA-D8-A27E	GLI3	DEL	Frame_Shift_Del	7	42018291	CAGCCACCTGCACACG	-	21	46
BRCA	TCGA-D8-A27F	HSD3B1	SNP	Missense_Mutation	1	120054136	C	A	17	54
BRCA	TCGA-D8-A27F	FLG2	SNP	Missense_Mutation	1	152327278	C	T	20	62
BRCA	TCGA-D8-A27F	PKLR	SNP	Missense_Mutation	1	155263003	A	C	6	56
BRCA	TCGA-D8-A27F	HMCN1	SNP	Missense_Mutation	1	185951458	G	T	46	56
BRCA	TCGA-D8-A27F	CSMD2	SNP	Missense_Mutation	1	33988932	T	C	50	67
BRCA	TCGA-D8-A27F	PIK3CD	SNP	Missense_Mutation	1	9777639	C	G	31	31
BRCA	TCGA-D8-A27F	MKI67	DEL	In_Frame_Del	10	129904060	ACTGGTAGGACCTCTTCTTTCACACCT	-	10	44
BRCA	TCGA-D8-A27F	WDFY4	SNP	Missense_Mutation	10	50025362	G	A	40	55
BRCA	TCGA-D8-A27F	CD44	SNP	Silent	11	35226171	G	C	37	49
BRCA	TCGA-D8-A27F	OR5W2	SNP	Missense_Mutation	11	55681285	C	T	17	60
BRCA	TCGA-D8-A27F	SRRM4	DEL	In_Frame_Del	12	119588983	CCCCCAGGTACA	-	30	70
BRCA	TCGA-D8-A27F	MYF6	SNP	Missense_Mutation	12	81101569	C	A	21	77
BRCA	TCGA-D8-A27F	SALL2	SNP	Missense_Mutation	14	22005013	C	G	30	78
BRCA	TCGA-D8-A27F	L3HYPDH	SNP	Silent	14	59950711	C	T	25	57
BRCA	TCGA-D8-A27F	STARD9	SNP	Silent	15	42977022	A	C	6	49
BRCA	TCGA-D8-A27F	ITGA11	SNP	Silent	15	68612682	T	A	51	39
BRCA	TCGA-D8-A27F	BLM	DEL	Frame_Shift_Del	15	91354482	GGAAGAAGTGCCGCTGAGGAGCTCGACG	-	39	49
BRCA	TCGA-D8-A27F	SLC9A5	SNP	Splice_Site	16	67283105	G	T	44	89
BRCA	TCGA-D8-A27F	C16orf85	DEL	Frame_Shift_Del	16	88620346	CGCAGTGCAGAGCTGGGACGGACGCC	-	19	42
BRCA	TCGA-D8-A27F	COL1A1	DEL	In_Frame_Del	17	48265251	GACCCTGGAGGCCAGAGAAGCCACGGT	-	41	96
BRCA	TCGA-D8-A27F	APPBP2	SNP	Missense_Mutation	17	58525152	A	T	4	60
BRCA	TCGA-D8-A27F	ZNF407	SNP	Silent	18	72775227	C	G	29	51
BRCA	TCGA-D8-A27F	NFIX	SNP	Silent	19	13186433	C	G	22	54
BRCA	TCGA-D8-A27F	PLIN4	SNP	Nonsense_Mutation	19	4513410	G	A	48	69
BRCA	TCGA-D8-A27F	SIGLEC5	SNP	Missense_Mutation	19	52115496	C	G	32	46
BRCA	TCGA-D8-A27F	IL11	SNP	Missense_Mutation	19	55880300	C	G	27	51
BRCA	TCGA-D8-A27F	OR2Z1	SNP	Missense_Mutation	19	8842092	A	T	10	49
BRCA	TCGA-D8-A27F	EPB41L5	SNP	Missense_Mutation	2	120799675	G	C	34	97
BRCA	TCGA-D8-A27F	PHOSPHO2	SNP	Missense_Mutation	2	170558059	A	G	12	55
BRCA	TCGA-D8-A27F	ITSN2	SNP	Missense_Mutation	2	24494689	C	G	28	52
BRCA	TCGA-D8-A27F	KCNG1	SNP	Silent	20	49626537	G	A	40	60
BRCA	TCGA-D8-A27F	TFAP2C	SNP	Missense_Mutation	20	55206502	G	T	42	62
BRCA	TCGA-D8-A27F	TSPEAR	SNP	Silent	21	45947265	G	C	33	67
BRCA	TCGA-D8-A27F	HUWE1	SNP	Missense_Mutation	23	53581746	C	T	30	65
BRCA	TCGA-D8-A27F	ZNF80	SNP	Missense_Mutation	3	113955515	C	T	28	46
BRCA	TCGA-D8-A27F	ADPRH	SNP	Missense_Mutation	3	119301156	A	T	10	64
BRCA	TCGA-D8-A27F	ADCY5	DEL	Frame_Shift_Del	3	123166299	GCGA	-	42	100
BRCA	TCGA-D8-A27F	HPS3	SNP	Missense_Mutation	3	148880113	T	A	64	77
BRCA	TCGA-D8-A27F	IGSF10	SNP	Silent	3	151162894	T	A	55	45
BRCA	TCGA-D8-A27F	CCNL1	DEL	In_Frame_Del	3	156868125	AAATCGAAC	-	9	63
BRCA	TCGA-D8-A27F	ZCWPW2	SNP	Missense_Mutation	3	28557108	C	A	17	51
BRCA	TCGA-D8-A27F	TCTA	SNP	Silent	3	49450057	G	A	44	57
BRCA	TCGA-D8-A27F	BAP1	DEL	Frame_Shift_Del	3	52436639	TAAAGGTGCAGATGAACTCATCGTAG	-	49	80
BRCA	TCGA-D8-A27F	GYPB	SNP	Nonsense_Mutation	4	144922352	G	T	45	47
BRCA	TCGA-D8-A27F	ANKH	SNP	Silent	5	14871377	C	T	25	59
BRCA	TCGA-D8-A27F	SLC34A1	SNP	Silent	5	176813238	C	G	21	55
BRCA	TCGA-D8-A27F	SEPP1	SNP	Silent	5	42800932	G	C	40	73
BRCA	TCGA-D8-A27F	OR2J2	SNP	Missense_Mutation	6	29141639	C	A	18	61
BRCA	TCGA-D8-A27F	BAG6	SNP	Missense_Mutation	6	31611965	T	C	55	72
BRCA	TCGA-D8-A27F	C6orf89	SNP	Missense_Mutation	6	36884276	C	G	29	50
BRCA	TCGA-D8-A27F	APOBEC2	SNP	Missense_Mutation	6	41029494	G	A	48	48
BRCA	TCGA-D8-A27F	DSP	DEL	Frame_Shift_Del	6	7583101	CTCAATATTCC	-	20	63
BRCA	TCGA-D8-A27F	RELN	SNP	Missense_Mutation	7	103183246	G	C	48	75
BRCA	TCGA-D8-A27F	EGFR	SNP	Silent	7	55268034	C	A	26	62
BRCA	TCGA-D8-A27F	CSMD3	SNP	Missense_Mutation	8	114326893	A	G	16	91
BRCA	TCGA-D8-A27F	ANK1	SNP	Missense_Mutation	8	41575713	T	C	57	92
BRCA	TCGA-D8-A27F	UBXN2B	SNP	Missense_Mutation	8	59352284	G	C	33	63
BRCA	TCGA-D8-A27F	MYBL1	SNP	Nonsense_Mutation	8	67488508	C	A	29	82
BRCA	TCGA-D8-A27F	GDAP1	SNP	Missense_Mutation	8	75276444	A	G	2	75
BRCA	TCGA-D8-A27F	ZFHX4	SNP	Missense_Mutation	8	77764960	G	A	43	55
BRCA	TCGA-D8-A27F	RAB14	SNP	Missense_Mutation	9	123943823	C	G	29	100
BRCA	TCGA-D8-A27F	CARD9	SNP	Missense_Mutation	9	139265150	C	T	29	78
BRCA	TCGA-D8-A27H	GJA5	SNP	Missense_Mutation	1	147230977	C	G	31	56
BRCA	TCGA-D8-A27H	FLG	SNP	Missense_Mutation	1	152282807	G	A	45	38
BRCA	TCGA-D8-A27H	RRNAD1	SNP	Missense_Mutation	1	156701823	C	T	29	66
BRCA	TCGA-D8-A27H	MRPL24	SNP	Missense_Mutation	1	156707244	C	G	21	100
BRCA	TCGA-D8-A27H	OR10R2	SNP	Missense_Mutation	1	158450097	G	T	46	63
BRCA	TCGA-D8-A27H	ATP1A4	SNP	Missense_Mutation	1	160129216	G	C	45	80
BRCA	TCGA-D8-A27H	FBXO42	SNP	Missense_Mutation	1	16577968	C	G	17	66
BRCA	TCGA-D8-A27H	TNR	SNP	Missense_Mutation	1	175375432	C	T	23	99
BRCA	TCGA-D8-A27H	CACNA1E	SNP	Missense_Mutation	1	181765933	C	A	30	81
BRCA	TCGA-D8-A27H	ATP2B4	SNP	Missense_Mutation	1	203683364	G	A	45	100
BRCA	TCGA-D8-A27H	MAPKAPK2	SNP	Silent	1	206904486	G	A	48	53
BRCA	TCGA-D8-A27H	SYF2	SNP	Missense_Mutation	1	25554645	T	G	62	88
BRCA	TCGA-D8-A27H	WRAP73	SNP	Missense_Mutation	1	3550035	C	G	28	50
BRCA	TCGA-D8-A27H	CSF3R	SNP	Missense_Mutation	1	36941196	A	T	12	77
BRCA	TCGA-D8-A27H	DPH2	SNP	Missense_Mutation	1	44437957	G	T	47	25
BRCA	TCGA-D8-A27H	SLC35D1	SNP	Silent	1	67486085	A	C	7	58
BRCA	TCGA-D8-A27H	PDCD4	SNP	Missense_Mutation	10	112650367	G	A	40	96
BRCA	TCGA-D8-A27H	RNF214	SNP	Missense_Mutation	11	117110556	C	G	29	72
BRCA	TCGA-D8-A27H	ANO9	SNP	Missense_Mutation	11	418935	G	T	41	60
BRCA	TCGA-D8-A27H	CCDC83	SNP	Missense_Mutation	11	85606377	A	C	4	52
BRCA	TCGA-D8-A27H	UTP20	SNP	Silent	12	101693508	G	A	36	51
BRCA	TCGA-D8-A27H	AEBP2	SNP	Missense_Mutation	12	19653099	C	G	24	95
BRCA	TCGA-D8-A27H	BAZ2A	DNP	Silent	12	56995411	GC	AA	46	54
BRCA	TCGA-D8-A27H	PPP1R12A	SNP	Missense_Mutation	12	80226269	C	A	18	87
BRCA	TCGA-D8-A27H	FRMD6	SNP	Missense_Mutation	14	52187001	A	C	6	81
BRCA	TCGA-D8-A27H	THBS1	SNP	Silent	15	39886350	C	G	23	47
BRCA	TCGA-D8-A27H	ZWILCH	SNP	Missense_Mutation	15	66819708	G	C	35	61
BRCA	TCGA-D8-A27H	MMP25	SNP	Missense_Mutation	16	3100510	C	G	20	58
BRCA	TCGA-D8-A27H	CREBBP	SNP	Missense_Mutation	16	3779066	C	G	32	60
BRCA	TCGA-D8-A27H	C16orf78	SNP	Missense_Mutation	16	49412426	C	G	24	46
BRCA	TCGA-D8-A27H	MYH8	SNP	Missense_Mutation	17	10318835	A	G	4	89
BRCA	TCGA-D8-A27H	MYH1	SNP	Missense_Mutation	17	10398288	A	T	7	92
BRCA	TCGA-D8-A27H	CDRT1	SNP	Missense_Mutation	17	15516055	C	G	28	44
BRCA	TCGA-D8-A27H	PLD2	SNP	Missense_Mutation	17	4713241	G	C	34	84
BRCA	TCGA-D8-A27H	SMG8	SNP	Missense_Mutation	17	57288711	G	C	41	52
BRCA	TCGA-D8-A27H	ACE	SNP	Missense_Mutation	17	61568690	G	C	41	70
BRCA	TCGA-D8-A27H	CD300A	DEL	Frame_Shift_Del	17	72469794	CAGATTTT	-	17	41
BRCA	TCGA-D8-A27H	CD300LB	SNP	Silent	17	72518949	G	T	41	51
BRCA	TCGA-D8-A27H	TP53	DEL	Frame_Shift_Del	17	7579360	GAAAC	-	41	61
BRCA	TCGA-D8-A27H	TMEM235	SNP	Silent	17	76235908	C	G	24	40
BRCA	TCGA-D8-A27H	ALOX15B	SNP	Missense_Mutation	17	7945743	A	T	10	57
BRCA	TCGA-D8-A27H	NPLOC4	SNP	Missense_Mutation	17	79536048	C	G	32	69
BRCA	TCGA-D8-A27H	METRNL	SNP	Silent	17	81043180	G	C	39	40
BRCA	TCGA-D8-A27H	MEP1B	SNP	Silent	18	29775426	A	G	8	39
BRCA	TCGA-D8-A27H	ASXL3	SNP	Missense_Mutation	18	31318818	A	C	2	47
BRCA	TCGA-D8-A27H	SERPINB13	SNP	Missense_Mutation	18	61264417	C	G	17	54
BRCA	TCGA-D8-A27H	ZNF440	DEL	Frame_Shift_Del	19	11942231	TGGAGAAACT	-	59	53
BRCA	TCGA-D8-A27H	OR10H3	SNP	Missense_Mutation	19	15852362	C	T	19	52
BRCA	TCGA-D8-A27H	ZNF302	SNP	Silent	19	35174103	T	C	51	51
BRCA	TCGA-D8-A27H	FCGBP	SNP	Missense_Mutation	19	40376817	G	A	43	51
BRCA	TCGA-D8-A27H	CEACAM16	SNP	Missense_Mutation	19	45206762	G	A	40	54
BRCA	TCGA-D8-A27H	ZNF816	SNP	Missense_Mutation	19	53453742	A	T	2	54
BRCA	TCGA-D8-A27H	ZNF525	SNP	Missense_Mutation	19	53884173	C	G	17	58
BRCA	TCGA-D8-A27H	ROCK2	SNP	Missense_Mutation	2	11354992	C	A	30	95
BRCA	TCGA-D8-A27H	WDR33	SNP	Missense_Mutation	2	128471382	C	T	23	91
BRCA	TCGA-D8-A27H	TUBA3E	SNP	Silent	2	130949653	C	T	21	87
BRCA	TCGA-D8-A27H	NCKAP5	SNP	Missense_Mutation	2	133540494	A	G	10	85
BRCA	TCGA-D8-A27H	NEB	SNP	Silent	2	152543948	G	A	47	81
BRCA	TCGA-D8-A27H	NBAS	SNP	Missense_Mutation	2	15326973	T	C	57	61
BRCA	TCGA-D8-A27H	HOXD13	SNP	Missense_Mutation	2	176959403	A	C	2	91
BRCA	TCGA-D8-A27H	TTN	SNP	Missense_Mutation	2	179445095	C	G	32	61
BRCA	TCGA-D8-A27H	ITGAV	SNP	Silent	2	187455104	C	G	22	50
BRCA	TCGA-D8-A27H	FAM124B	SNP	Missense_Mutation	2	225266346	C	G	23	98
BRCA	TCGA-D8-A27H	GPR55	SNP	Silent	2	231774802	G	A	45	57
BRCA	TCGA-D8-A27H	HJURP	SNP	Missense_Mutation	2	234758445	G	C	41	49
BRCA	TCGA-D8-A27H	CAPN14	SNP	Missense_Mutation	2	31412173	C	T	19	39
BRCA	TCGA-D8-A27H	LHCGR	SNP	Silent	2	48936098	C	A	26	53
BRCA	TCGA-D8-A27H	MYH7B	SNP	Missense_Mutation	20	33587427	G	A	41	97
BRCA	TCGA-D8-A27H	PHF20	SNP	Missense_Mutation	20	34451203	A	C	11	80
BRCA	TCGA-D8-A27H	TOP1	SNP	Missense_Mutation	20	39750739	G	C	33	51
BRCA	TCGA-D8-A27H	NCOA3	SNP	Missense_Mutation	20	46268762	C	G	30	72
BRCA	TCGA-D8-A27H	CSE1L	SNP	Missense_Mutation	20	47682930	G	C	33	100
BRCA	TCGA-D8-A27H	CLDN14	SNP	Silent	21	37833619	G	A	45	61
BRCA	TCGA-D8-A27H	MTMR3	SNP	Missense_Mutation	22	30421701	G	C	36	93
BRCA	TCGA-D8-A27H	CAPN6	SNP	Silent	23	110494202	C	G	29	53
BRCA	TCGA-D8-A27H	ZNF75D	SNP	Missense_Mutation	23	134421701	C	T	31	51
BRCA	TCGA-D8-A27H	FMR1	SNP	Missense_Mutation	23	147027089	C	G	19	80
BRCA	TCGA-D8-A27H	CXorf23	DEL	Frame_Shift_Del	23	19947961	GTGAACCGTAAAC	-	36	66
BRCA	TCGA-D8-A27H	ZXDC	SNP	Missense_Mutation	3	126191121	C	G	20	70
BRCA	TCGA-D8-A27H	KIAA1257	SNP	Missense_Mutation	3	128707723	T	C	61	61
BRCA	TCGA-D8-A27H	KY	SNP	Missense_Mutation	3	134327635	C	G	30	68
BRCA	TCGA-D8-A27H	XRN1	SNP	Missense_Mutation	3	142137414	A	T	5	77
BRCA	TCGA-D8-A27H	SLITRK3	SNP	Missense_Mutation	3	164908611	G	A	35	71
BRCA	TCGA-D8-A27H	KCNMB3	SNP	Silent	3	178968569	G	A	33	59
BRCA	TCGA-D8-A27H	MFI2	SNP	Missense_Mutation	3	196735702	A	G	13	65
BRCA	TCGA-D8-A27H	ZNF445	SNP	Missense_Mutation	3	44488277	G	T	34	51
BRCA	TCGA-D8-A27H	TRPC3	SNP	Missense_Mutation	4	122825607	A	G	6	93
BRCA	TCGA-D8-A27H	C4orf29	SNP	Missense_Mutation	4	128938562	G	C	41	100
BRCA	TCGA-D8-A27H	ODZ3	SNP	Nonsense_Mutation	4	183603098	G	T	39	100
BRCA	TCGA-D8-A27H	ACSL1	DEL	Frame_Shift_Del	4	185687030	TGACATCCACCTCACC	-	59	48
BRCA	TCGA-D8-A27H	GBA3	SNP	Silent	4	22748975	A	G	8	54
BRCA	TCGA-D8-A27H	KIAA1239	SNP	Missense_Mutation	4	37445491	A	T	3	53
BRCA	TCGA-D8-A27H	SCARB2	SNP	Missense_Mutation	4	77100814	G	C	37	51
BRCA	TCGA-D8-A27H	FCHSD1	SNP	Missense_Mutation	5	141029054	C	A	26	59
BRCA	TCGA-D8-A27H	FAM153A	DEL	Frame_Shift_Del	5	177164037	CTTTACCGTGT	-	20	44
BRCA	TCGA-D8-A27H	SKP2	SNP	Missense_Mutation	5	36177372	G	C	45	69
BRCA	TCGA-D8-A27H	KIAA0947	SNP	Missense_Mutation	5	5444434	T	C	55	73
BRCA	TCGA-D8-A27H	KIAA0947	SNP	Missense_Mutation	5	5464629	C	T	26	93
BRCA	TCGA-D8-A27H	RNF146	SNP	Missense_Mutation	6	127608175	A	C	13	57
BRCA	TCGA-D8-A27H	SYNE1	SNP	Missense_Mutation	6	152686119	C	G	32	58
BRCA	TCGA-D8-A27H	ZSCAN23	SNP	Missense_Mutation	6	28402746	C	G	32	49
BRCA	TCGA-D8-A27H	PFDN6	SNP	Missense_Mutation	6	33257979	G	C	33	88
BRCA	TCGA-D8-A27H	ACTL6B	SNP	Missense_Mutation	7	100244378	C	A	27	93
BRCA	TCGA-D8-A27H	RELN	SNP	Missense_Mutation	7	103183194	C	G	30	99
BRCA	TCGA-D8-A27H	UBN2	SNP	Missense_Mutation	7	138968722	C	T	19	74
BRCA	TCGA-D8-A27H	DPP6	SNP	Silent	7	154561218	C	T	29	50
BRCA	TCGA-D8-A27H	AMPH	SNP	Missense_Mutation	7	38424487	G	A	34	71
BRCA	TCGA-D8-A27H	CYP7A1	SNP	Splice_site	8	59407066	T	G	53	53
BRCA	TCGA-D8-A27H	FABP12	SNP	Missense_Mutation	8	82441695	G	A	40	85
BRCA	TCGA-D8-A27H	RGS3	SNP	Missense_Mutation	9	116226093	C	G	30	71
BRCA	TCGA-D8-A27H	GLDC	SNP	Missense_Mutation	9	6592147	G	C	33	93
BRCA	TCGA-D8-A27H	APBA1	SNP	Missense_Mutation	9	72131068	G	C	45	68
BRCA	TCGA-D8-A27H	TMEM2	SNP	Missense_Mutation	9	74345042	T	G	50	89
BRCA	TCGA-D8-A27I	POGZ	SNP	Missense_Mutation	1	151379720	T	C	52	68
BRCA	TCGA-D8-A27I	RYR2	SNP	Missense_Mutation	1	237777819	A	T	3	50
BRCA	TCGA-D8-A27I	OR2T33	SNP	Missense_Mutation	1	248436177	T	C	64	60
BRCA	TCGA-D8-A27I	USP47	SNP	Missense_Mutation	11	11964387	A	G	12	88
BRCA	TCGA-D8-A27I	SLC22A12	SNP	Silent	11	64361228	G	T	46	51
BRCA	TCGA-D8-A27I	ABCC9	SNP	Missense_Mutation	12	22068664	G	T	42	99
BRCA	TCGA-D8-A27I	SCN8A	SNP	Missense_Mutation	12	52162755	G	A	40	100
BRCA	TCGA-D8-A27I	TUBA3C	SNP	Missense_Mutation	13	19752451	C	T	27	70
BRCA	TCGA-D8-A27I	FAM189A1	SNP	Missense_Mutation	15	29443953	G	C	41	82
BRCA	TCGA-D8-A27I	SCNN1G	SNP	Missense_Mutation	16	23200787	G	A	37	81
BRCA	TCGA-D8-A27I	TTLL6	SNP	Missense_Mutation	17	46846360	C	G	32	55
BRCA	TCGA-D8-A27I	ANKRD40	SNP	Silent	17	48777007	C	A	22	57
BRCA	TCGA-D8-A27I	PLVAP	SNP	Missense_Mutation	19	17476703	G	A	40	56
BRCA	TCGA-D8-A27I	TMPRSS15	SNP	Missense_Mutation	21	19770211	C	G	32	54
BRCA	TCGA-D8-A27I	LGALS2	SNP	Nonsense_Mutation	22	37966365	C	A	31	49
BRCA	TCGA-D8-A27I	GTSE1	SNP	Missense_Mutation	22	46719150	C	T	29	68
BRCA	TCGA-D8-A27I	VCX3B	SNP	Missense_Mutation	23	8434101	G	A	44	53
BRCA	TCGA-D8-A27I	CD200R1	SNP	Missense_Mutation	3	112648154	C	A	29	57
BRCA	TCGA-D8-A27I	MBNL1	SNP	Missense_Mutation	3	152165442	A	G	1	92
BRCA	TCGA-D8-A27I	KLB	SNP	Missense_Mutation	4	39439521	G	A	37	47
BRCA	TCGA-D8-A27I	MEGF10	SNP	Silent	5	126792857	T	C	49	50
BRCA	TCGA-D8-A27I	PCDHGB1	SNP	Missense_Mutation	5	140730020	C	T	27	54
BRCA	TCGA-D8-A27I	GABRA1	SNP	Silent	5	161324182	C	T	17	52
BRCA	TCGA-D8-A27I	ADAMTS12	SNP	Missense_Mutation	5	33658359	G	A	39	72
BRCA	TCGA-D8-A27I	AHRR	SNP	Missense_Mutation	5	434764	C	T	19	49
BRCA	TCGA-D8-A27I	GPRC6A	SNP	Silent	6	117130687	C	G	18	45
BRCA	TCGA-D8-A27I	ZNF425	SNP	Missense_Mutation	7	148815337	T	C	52	66
BRCA	TCGA-D8-A27I	PSMG3	SNP	Missense_Mutation	7	1607460	G	C	44	58
BRCA	TCGA-D8-A27I	CSPP1	SNP	Silent	8	68062079	A	G	8	58
BRCA	TCGA-D8-A27I	IKBKAP	SNP	Silent	9	111663920	G	A	45	65
BRCA	TCGA-D8-A27I	CNTRL	SNP	Missense_Mutation	9	123922564	G	A	48	58
BRCA	TCGA-D8-A27K	ARV1	INS	Frame_Shift_Ins	1	231131566	-	A	25	51
BRCA	TCGA-D8-A27K	TTC22	SNP	Silent	1	55251674	C	T	19	39
BRCA	TCGA-D8-A27K	IFI44	SNP	Missense_Mutation	1	79120883	A	G	12	52
BRCA	TCGA-D8-A27K	TACC2	SNP	Missense_Mutation	10	123954680	C	T	23	55
BRCA	TCGA-D8-A27K	GATA3	INS	Frame_Shift_Ins	10	8111558	-	AATA	17	78
BRCA	TCGA-D8-A27K	DENND5B	SNP	Missense_Mutation	12	31613237	G	C	43	98
BRCA	TCGA-D8-A27K	OR6C3	SNP	Missense_Mutation	12	55725992	G	A	40	39
BRCA	TCGA-D8-A27K	FRY	SNP	Missense_Mutation	13	32753825	C	T	21	100
BRCA	TCGA-D8-A27K	RYR3	SNP	Nonsense_Mutation	15	34064135	C	A	29	88
BRCA	TCGA-D8-A27K	B4GALNT2	SNP	Nonsense_Mutation	17	47246211	C	T	27	65
BRCA	TCGA-D8-A27K	HGS	SNP	Missense_Mutation	17	79662012	G	A	34	81
BRCA	TCGA-D8-A27K	NBAS	SNP	Missense_Mutation	2	15651439	A	T	14	51
BRCA	TCGA-D8-A27K	GNLY	SNP	Silent	2	85923124	G	T	35	41
BRCA	TCGA-D8-A27K	COL4A6	SNP	Missense_Mutation	23	107402723	C	A	27	69
BRCA	TCGA-D8-A27K	PIK3CA	DEL	In_Frame_Del	3	178916944	AAG	-	1	89
BRCA	TCGA-D8-A27K	SEMA6A	SNP	Missense_Mutation	5	115822497	G	A	37	77
BRCA	TCGA-D8-A27K	S100Z	SNP	Missense_Mutation	5	76173644	A	G	3	89
BRCA	TCGA-D8-A27K	OPRM1	SNP	Silent	6	154412457	T	C	51	50
BRCA	TCGA-D8-A27K	TPMT	SNP	Silent	6	18132371	C	T	18	41
BRCA	TCGA-D8-A27K	CDC5L	SNP	Splice_Site	6	44413391	G	C	33	100
BRCA	TCGA-D8-A27K	LRRC61	SNP	Missense_Mutation	7	150034402	G	A	39	48
BRCA	TCGA-D8-A27K	OGDH	SNP	Silent	7	44713499	G	A	35	62
BRCA	TCGA-D8-A27K	PURG	SNP	Missense_Mutation	8	30890012	C	T	23	82
BRCA	TCGA-D8-A27L	NAV1	SNP	Nonsense_Mutation	1	201772760	C	G	29	98
BRCA	TCGA-D8-A27L	RERE	SNP	Nonsense_Mutation	1	8426006	C	T	21	100
BRCA	TCGA-D8-A27L	PPRC1	SNP	Missense_Mutation	10	103908402	C	T	29	69
BRCA	TCGA-D8-A27L	PTEN	INS	Frame_Shift_Ins	10	89624271	-	T	12	66
BRCA	TCGA-D8-A27L	OTUB1	SNP	Missense_Mutation	11	63764394	T	C	52	75
BRCA	TCGA-D8-A27L	NEIL1	SNP	Missense_Mutation	15	75641328	G	A	41	64
BRCA	TCGA-D8-A27L	KAT8	SNP	Missense_Mutation	16	31141789	C	T	30	97
BRCA	TCGA-D8-A27L	RHOT2	SNP	Silent	16	723516	C	T	32	68
BRCA	TCGA-D8-A27L	GREB1L	SNP	Silent	18	19088425	C	T	19	52
BRCA	TCGA-D8-A27L	CDH7	SNP	Missense_Mutation	18	63547657	A	G	6	90
BRCA	TCGA-D8-A27L	ZNF254	SNP	Missense_Mutation	19	24270126	G	A	33	44
BRCA	TCGA-D8-A27L	NPAS1	SNP	Missense_Mutation	19	47535538	C	T	22	62
BRCA	TCGA-D8-A27L	ZNF417	SNP	Missense_Mutation	19	58423433	G	A	37	67
BRCA	TCGA-D8-A27L	TTC30B	SNP	Silent	2	178417084	T	C	53	53
BRCA	TCGA-D8-A27L	FSIP2	SNP	Missense_Mutation	2	186625798	G	A	42	43
BRCA	TCGA-D8-A27L	CAD	SNP	Missense_Mutation	2	27447710	A	G	16	90
BRCA	TCGA-D8-A27L	KDM3A	SNP	Missense_Mutation	2	86709187	G	A	47	89
BRCA	TCGA-D8-A27L	KANSL3	SNP	Missense_Mutation	2	97268573	G	C	47	95
BRCA	TCGA-D8-A27L	SGK2	SNP	Missense_Mutation	20	42195054	G	A	47	42
BRCA	TCGA-D8-A27L	TMPRSS6	SNP	Missense_Mutation	22	37482397	G	A	38	69
BRCA	TCGA-D8-A27L	PAK3	SNP	Silent	23	110385364	T	A	62	56
BRCA	TCGA-D8-A27L	FRMPD4	SNP	Missense_Mutation	23	12736552	C	A	25	93
BRCA	TCGA-D8-A27L	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A27L	MASP1	SNP	Silent	3	186953790	G	A	39	30
BRCA	TCGA-D8-A27L	LRRC15	SNP	Silent	3	194080618	G	A	37	45
BRCA	TCGA-D8-A27L	LRRC15	SNP	Silent	3	194080750	C	T	23	43
BRCA	TCGA-D8-A27L	AZI2	SNP	Missense_Mutation	3	28381965	G	C	45	61
BRCA	TCGA-D8-A27L	FOXP1	SNP	Missense_Mutation	3	71021818	G	A	38	100
BRCA	TCGA-D8-A27L	ANK2	SNP	Silent	4	114158316	C	T	19	50
BRCA	TCGA-D8-A27L	PCDHGB6	SNP	Missense_Mutation	5	140788421	G	A	35	86
BRCA	TCGA-D8-A27L	C5orf22	SNP	Splice_Site	5	31545752	G	A	33	80
BRCA	TCGA-D8-A27L	MAP3K1	INS	Frame_Shift_Ins	5	56180536	-	A	33	78
BRCA	TCGA-D8-A27L	MAP3K1	DEL	In_Frame_Del	5	56180586	CAT	-	17	57
BRCA	TCGA-D8-A27L	FAM131B	SNP	Missense_Mutation	7	143056010	G	C	45	93
BRCA	TCGA-D8-A27L	ZNF483	SNP	Silent	9	114290002	G	A	41	60
BRCA	TCGA-D8-A27M	VPS13D	SNP	Silent	1	12374322	C	A	32	68
BRCA	TCGA-D8-A27M	OR10K1	SNP	Missense_Mutation	1	158435435	T	G	63	48
BRCA	TCGA-D8-A27M	FMO1	SNP	Silent	1	171250104	C	T	19	50
BRCA	TCGA-D8-A27M	CEP350	SNP	Missense_Mutation	1	180062936	A	G	8	56
BRCA	TCGA-D8-A27M	CNKSR1	SNP	Missense_Mutation	1	26508367	A	C	1	67
BRCA	TCGA-D8-A27M	LRRC8C	SNP	Missense_Mutation	1	90180366	C	A	23	99
BRCA	TCGA-D8-A27M	AGRN	SNP	Missense_Mutation	1	984735	A	T	11	88
BRCA	TCGA-D8-A27M	PANX3	SNP	Missense_Mutation	11	124489712	G	C	41	85
BRCA	TCGA-D8-A27M	NCAPD3	SNP	Missense_Mutation	11	134090556	T	A	56	53
BRCA	TCGA-D8-A27M	ALKBH3	SNP	Missense_Mutation	11	43940636	G	A	41	71
BRCA	TCGA-D8-A27M	GSTP1	SNP	Missense_Mutation	11	67352214	C	G	18	63
BRCA	TCGA-D8-A27M	STARD10	SNP	Missense_Mutation	11	72468901	C	T	31	75
BRCA	TCGA-D8-A27M	OASL	SNP	Missense_Mutation	12	121476669	C	T	27	49
BRCA	TCGA-D8-A27M	C12orf70	SNP	Missense_Mutation	12	27654981	G	A	38	46
BRCA	TCGA-D8-A27M	MYO16	SNP	Missense_Mutation	13	109496701	G	C	44	89
BRCA	TCGA-D8-A27M	TJP1	SNP	Missense_Mutation	15	30011076	C	G	20	50
BRCA	TCGA-D8-A27M	C15orf53	SNP	Silent	15	38990578	C	G	24	50
BRCA	TCGA-D8-A27M	ANPEP	SNP	Missense_Mutation	15	90342682	T	G	55	60
BRCA	TCGA-D8-A27M	ZNF263	SNP	Silent	16	3336103	C	T	32	49
BRCA	TCGA-D8-A27M	ADCY9	SNP	Missense_Mutation	16	4057514	C	G	27	45
BRCA	TCGA-D8-A27M	FTSJD1	SNP	Missense_Mutation	16	71318994	A	C	1	89
BRCA	TCGA-D8-A27M	NF1	DEL	Splice_Site	17	29670148	TAAAAGG	-	61	88
BRCA	TCGA-D8-A27M	OTOP2	SNP	Missense_Mutation	17	72920980	G	A	40	55
BRCA	TCGA-D8-A27M	TP53	SNP	Nonsense_Mutation	17	7578263	G	A	39	67
BRCA	TCGA-D8-A27M	LILRA1	SNP	Nonsense_Mutation	19	55106797	C	A	28	53
BRCA	TCGA-D8-A27M	GCC2	SNP	Nonsense_Mutation	2	109086705	C	A	29	62
BRCA	TCGA-D8-A27M	POTEJ	SNP	Missense_Mutation	2	131414573	A	C	3	73
BRCA	TCGA-D8-A27M	CCDC74A	SNP	Missense_Mutation	2	132288293	G	C	41	68
BRCA	TCGA-D8-A27M	KIF5C	SNP	Missense_Mutation	2	149868144	G	T	37	84
BRCA	TCGA-D8-A27M	TTN	SNP	Splice_Site	2	179477304	C	G	32	100
BRCA	TCGA-D8-A27M	FAM171B	SNP	Nonsense_Mutation	2	187626600	G	T	45	59
BRCA	TCGA-D8-A27M	APMAP	SNP	Missense_Mutation	20	24954310	G	C	44	60
BRCA	TCGA-D8-A27M	ATP9A	SNP	Splice_site	20	50238710	A	T	2	88
BRCA	TCGA-D8-A27M	IGLC3	SNP	Silent	22	23248691	C	T	17	65
BRCA	TCGA-D8-A27M	TCF20	SNP	Missense_Mutation	22	42564676	G	T	46	87
BRCA	TCGA-D8-A27M	SMC1B	SNP	Silent	22	45802482	G	A	45	60
BRCA	TCGA-D8-A27M	ZNF75D	SNP	Silent	23	134426226	G	T	43	57
BRCA	TCGA-D8-A27M	GYG2	SNP	Silent	23	2761348	G	A	37	48
BRCA	TCGA-D8-A27M	ZNF81	SNP	Missense_Mutation	23	47774912	C	A	32	54
BRCA	TCGA-D8-A27M	XRN1	SNP	Missense_Mutation	3	142102248	C	T	31	64
BRCA	TCGA-D8-A27M	MUC4	SNP	Silent	3	195506982	G	C	43	54
BRCA	TCGA-D8-A27M	TET2	DEL	In_Frame_Del	4	106155404	CTC	-	32	79
BRCA	TCGA-D8-A27M	TMEM155	SNP	Missense_Mutation	4	122682813	G	A	38	50
BRCA	TCGA-D8-A27M	FREM3	SNP	Missense_Mutation	4	144545312	C	T	17	72
BRCA	TCGA-D8-A27M	TMPRSS11D	SNP	Missense_Mutation	4	68725377	T	C	58	49
BRCA	TCGA-D8-A27M	DSPP	SNP	Silent	4	88537123	C	T	27	45
BRCA	TCGA-D8-A27M	STK10	SNP	Silent	5	171533635	C	T	27	45
BRCA	TCGA-D8-A27M	KIF2A	SNP	Missense_Mutation	5	61642964	A	G	14	62
BRCA	TCGA-D8-A27M	HLA-F	SNP	Missense_Mutation	6	29692856	C	T	26	45
BRCA	TCGA-D8-A27M	KIFC1	SNP	Silent	6	33371565	T	C	56	44
BRCA	TCGA-D8-A27M	KIF6	SNP	Missense_Mutation	6	39507890	G	A	39	55
BRCA	TCGA-D8-A27M	IMPG1	SNP	Missense_Mutation	6	76728458	G	T	34	52
BRCA	TCGA-D8-A27M	VSTM2A	DEL	Frame_Shift_Del	7	54610496	TC	-	62	59
BRCA	TCGA-D8-A27M	FAM83A	SNP	Splice_Site	8	124221764	G	A	34	50
BRCA	TCGA-D8-A27M	SPTAN1	SNP	Missense_Mutation	9	131367318	C	G	28	99
BRCA	TCGA-D8-A27M	PMPCA	SNP	Missense_Mutation	9	139313014	A	C	10	89
BRCA	TCGA-D8-A27M	FAM166A	SNP	Missense_Mutation	9	140138642	G	C	33	71
BRCA	TCGA-D8-A27M	DOCK8	SNP	Silent	9	390476	C	T	30	70
BRCA	TCGA-D8-A27N	CFHR5	SNP	Missense_Mutation	1	196952137	T	G	58	53
BRCA	TCGA-D8-A27N	ZDHHC18	SNP	Splice_Site	1	27176930	G	A	40	96
BRCA	TCGA-D8-A27N	RBBP4	SNP	Silent	1	33138484	C	T	29	83
BRCA	TCGA-D8-A27N	CPT2	SNP	Missense_Mutation	1	53676854	G	A	38	100
BRCA	TCGA-D8-A27N	SERBP1	SNP	Missense_Mutation	1	67891834	C	T	31	94
BRCA	TCGA-D8-A27N	TRUB1	SNP	Missense_Mutation	10	116710886	C	T	18	59
BRCA	TCGA-D8-A27N	OR51E2	SNP	Missense_Mutation	11	4703136	G	T	43	54
BRCA	TCGA-D8-A27N	APLNR	SNP	Missense_Mutation	11	57003529	C	T	27	100
BRCA	TCGA-D8-A27N	SLC22A11	SNP	Silent	11	64338508	G	A	38	66
BRCA	TCGA-D8-A27N	PCF11	SNP	Silent	11	82877694	A	G	15	49
BRCA	TCGA-D8-A27N	PTGES3	SNP	Missense_Mutation	12	57065615	C	G	32	82
BRCA	TCGA-D8-A27N	SYNE2	DEL	Frame_Shift_Del	14	64687206	GTGAGCA	-	40	56
BRCA	TCGA-D8-A27N	DNAJC17	SNP	Silent	15	41060225	G	A	37	37
BRCA	TCGA-D8-A27N	LONP2	SNP	Silent	16	48303976	C	T	19	57
BRCA	TCGA-D8-A27N	SAMD14	SNP	Missense_Mutation	17	48191567	G	A	33	82
BRCA	TCGA-D8-A27N	GH2	SNP	Missense_Mutation	17	61958411	C	A	24	52
BRCA	TCGA-D8-A27N	C17orf28	SNP	Missense_Mutation	17	72951961	G	A	33	99
BRCA	TCGA-D8-A27N	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-D8-A27N	FASN	SNP	Silent	17	80040021	C	T	19	40
BRCA	TCGA-D8-A27N	DSEL	SNP	Missense_Mutation	18	65178341	G	C	41	70
BRCA	TCGA-D8-A27N	ENOSF1	SNP	Missense_Mutation	18	674341	T	A	56	49
BRCA	TCGA-D8-A27N	SUGP1	SNP	Missense_Mutation	19	19390149	G	T	48	58
BRCA	TCGA-D8-A27N	FCAR	SNP	Missense_Mutation	19	55399502	C	A	20	47
BRCA	TCGA-D8-A27N	DIS3L2	SNP	Missense_Mutation	2	233164783	G	A	39	84
BRCA	TCGA-D8-A27N	ABCG8	SNP	Splice_site	2	44071747	G	A	35	95
BRCA	TCGA-D8-A27N	SEPT5	SNP	Missense_Mutation	22	19708187	C	T	27	56
BRCA	TCGA-D8-A27N	MYH9	SNP	Nonsense_Mutation	22	36684952	C	A	32	87
BRCA	TCGA-D8-A27N	EIF3L	DEL	In_Frame_Del	22	38273806	GCA	-	46	99
BRCA	TCGA-D8-A27N	SBF1	SNP	Missense_Mutation	22	50906107	C	T	19	37
BRCA	TCGA-D8-A27N	GATA1	SNP	Silent	23	48650324	C	T	19	40
BRCA	TCGA-D8-A27N	NHSL2	SNP	Silent	23	71360164	G	A	39	28
BRCA	TCGA-D8-A27N	PLD1	SNP	Missense_Mutation	3	171455363	C	T	28	84
BRCA	TCGA-D8-A27N	VPS8	SNP	Missense_Mutation	3	184570300	C	G	30	96
BRCA	TCGA-D8-A27N	MFAP3L	SNP	Missense_Mutation	4	170912535	A	T	8	84
BRCA	TCGA-D8-A27N	DSPP	SNP	Silent	4	88537324	C	T	17	56
BRCA	TCGA-D8-A27N	KLHL3	DEL	Frame_Shift_Del	5	136969761	TA	-	57	91
BRCA	TCGA-D8-A27N	ADAMTS16	SNP	Missense_Mutation	5	5242237	G	T	34	50
BRCA	TCGA-D8-A27N	IL31RA	SNP	Missense_Mutation	5	55178962	C	T	27	50
BRCA	TCGA-D8-A27N	ZC3HC1	SNP	Missense_Mutation	7	129664182	C	A	27	64
BRCA	TCGA-D8-A27N	MYO1G	SNP	Missense_Mutation	7	45004603	G	T	46	64
BRCA	TCGA-D8-A27N	USP42	SNP	Splice_Site	7	6175584	T	A	57	91
BRCA	TCGA-D8-A27N	AKAP9	SNP	Missense_Mutation	7	91682267	A	C	7	61
BRCA	TCGA-D8-A27N	PKHD1L1	SNP	Missense_Mutation	8	110424512	C	A	25	80
BRCA	TCGA-D8-A27N	CYP7B1	SNP	Nonsense_Mutation	8	65509378	T	A	63	70
BRCA	TCGA-D8-A27N	PAPPA	SNP	Silent	9	119115961	T	A	55	47
BRCA	TCGA-D8-A27N	VLDLR	SNP	Missense_Mutation	9	2648254	G	A	48	88
BRCA	TCGA-D8-A27P	FLG	SNP	Nonsense_Mutation	1	152285536	G	T	37	65
BRCA	TCGA-D8-A27P	JTB	DEL	Frame_Shift_Del	1	153949695	GGGGGAGGCCA	-	47	75
BRCA	TCGA-D8-A27P	JTB	DEL	Frame_Shift_Del	1	153949711	CC	-	30	58
BRCA	TCGA-D8-A27P	ACTN2	SNP	Missense_Mutation	1	236908040	G	A	38	100
BRCA	TCGA-D8-A27P	MACF1	SNP	Missense_Mutation	1	39775287	G	A	46	44
BRCA	TCGA-D8-A27P	PLCE1	SNP	Missense_Mutation	10	96018782	G	A	38	100
BRCA	TCGA-D8-A27P	NUMA1	SNP	Nonsense_Mutation	11	71726685	G	A	46	71
BRCA	TCGA-D8-A27P	LAG3	SNP	Nonsense_Mutation	12	6882468	C	T	27	53
BRCA	TCGA-D8-A27P	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-D8-A27P	PTGDR	SNP	Silent	14	52735144	C	T	21	74
BRCA	TCGA-D8-A27P	LRRC37A3	SNP	Missense_Mutation	17	62892159	G	T	34	2
BRCA	TCGA-D8-A27P	SRP68	SNP	Silent	17	74041393	A	T	11	37
BRCA	TCGA-D8-A27P	DSG3	SNP	Missense_Mutation	18	29055684	G	T	38	26
BRCA	TCGA-D8-A27P	NETO1	SNP	Missense_Mutation	18	70526127	T	C	50	78
BRCA	TCGA-D8-A27P	SCN3A	SNP	Silent	2	165947251	C	T	31	35
BRCA	TCGA-D8-A27P	FBXO11	SNP	Missense_Mutation	2	48049368	T	C	52	91
BRCA	TCGA-D8-A27P	R3HDML	SNP	Silent	20	42965927	C	T	24	49
BRCA	TCGA-D8-A27P	ALG12	SNP	Missense_Mutation	22	50304162	A	T	9	86
BRCA	TCGA-D8-A27P	UBA1	SNP	Silent	23	47073947	A	G	4	60
BRCA	TCGA-D8-A27P	HUWE1	SNP	Missense_Mutation	23	53561598	C	T	27	96
BRCA	TCGA-D8-A27P	COLQ	SNP	Missense_Mutation	3	15531117	C	T	19	76
BRCA	TCGA-D8-A27P	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-D8-A27P	NSD1	SNP	Missense_Mutation	5	176637903	G	T	47	72
BRCA	TCGA-D8-A27P	NOS3	SNP	Silent	7	150698507	C	T	28	69
BRCA	TCGA-D8-A27P	MLL3	SNP	Splice_Site	7	152012425	T	G	53	83
BRCA	TCGA-D8-A27P	ELN	SNP	Splice_site	7	73471003	C	T	23	39
BRCA	TCGA-D8-A27R	SLC45A3	SNP	Missense_Mutation	1	205632534	C	A	19	69
BRCA	TCGA-D8-A27R	EPRS	SNP	Missense_Mutation	1	220170582	C	T	32	93
BRCA	TCGA-D8-A27R	FAM13C	SNP	Missense_Mutation	10	61028447	G	A	38	62
BRCA	TCGA-D8-A27R	LARP4B	SNP	Nonsense_Mutation	10	882385	G	T	46	73
BRCA	TCGA-D8-A27R	PLCB3	SNP	Missense_Mutation	11	64030194	G	A	45	97
BRCA	TCGA-D8-A27R	CLCF1	SNP	Missense_Mutation	11	67132963	C	T	31	69
BRCA	TCGA-D8-A27R	FBXO33	SNP	Missense_Mutation	14	39870722	C	T	30	85
BRCA	TCGA-D8-A27R	ESRRB	SNP	Silent	14	76964669	C	T	25	64
BRCA	TCGA-D8-A27R	GOLGA8A	SNP	Silent	15	34676192	C	T	28	54
BRCA	TCGA-D8-A27R	BLOC1S6	SNP	Splice_site	15	45884474	C	G	19	86
BRCA	TCGA-D8-A27R	TAOK1	SNP	Missense_Mutation	17	27822641	G	T	41	100
BRCA	TCGA-D8-A27R	MAPK4	SNP	Missense_Mutation	18	48190626	G	A	40	58
BRCA	TCGA-D8-A27R	AXL	SNP	Missense_Mutation	19	41743948	C	T	31	60
BRCA	TCGA-D8-A27R	RGPD4	SNP	Missense_Mutation	2	108487890	C	G	20	55
BRCA	TCGA-D8-A27R	INPP1	SNP	Silent	2	191236038	A	G	11	47
BRCA	TCGA-D8-A27R	ANKRD36C	SNP	Missense_Mutation	2	96581796	G	T	48	56
BRCA	TCGA-D8-A27R	ASXL1	SNP	Missense_Mutation	20	31024797	T	C	62	55
BRCA	TCGA-D8-A27R	MOV10L1	SNP	Missense_Mutation	22	50563962	C	T	22	87
BRCA	TCGA-D8-A27R	PLXNB3	SNP	Silent	23	153043430	C	T	24	51
BRCA	TCGA-D8-A27R	MXRA5	SNP	Missense_Mutation	23	3235330	G	A	38	64
BRCA	TCGA-D8-A27R	KIAA1109	SNP	Splice_Site	4	123254965	G	T	44	100
BRCA	TCGA-D8-A27R	TLL1	SNP	Splice_Site	4	166999053	A	T	7	94
BRCA	TCGA-D8-A27R	PCDHAC2	SNP	Missense_Mutation	5	140348477	T	C	49	90
BRCA	TCGA-D8-A27R	CARD6	SNP	Missense_Mutation	5	40853931	C	A	18	42
BRCA	TCGA-D8-A27R	HTR1B	SNP	Silent	6	78172317	G	C	35	51
BRCA	TCGA-D8-A27R	AKAP9	SNP	Missense_Mutation	7	91641818	C	T	31	63
BRCA	TCGA-D8-A27R	SPAG8	DNP	Missense_Mutation	9	35811883	CC	TA	26	55
BRCA	TCGA-D8-A27T	PADI3	SNP	Silent	1	17597589	T	C	51	39
BRCA	TCGA-D8-A27T	GPR137B	SNP	Missense_Mutation	1	236341813	G	T	35	51
BRCA	TCGA-D8-A27T	SCT	SNP	Silent	11	626464	G	A	38	42
BRCA	TCGA-D8-A27T	RIN1	SNP	Missense_Mutation	11	66102467	G	C	43	85
BRCA	TCGA-D8-A27T	PITPNM1	SNP	Silent	11	67260513	G	A	39	41
BRCA	TCGA-D8-A27T	PCDH9	SNP	Missense_Mutation	13	67802512	C	T	27	74
BRCA	TCGA-D8-A27T	GNPNAT1	SNP	Splice_Site	14	53247396	C	A	17	92
BRCA	TCGA-D8-A27T	EIF2AK4	SNP	Missense_Mutation	15	40295488	G	T	46	87
BRCA	TCGA-D8-A27T	CDH1	SNP	Splice_site	16	68846166	G	A	39	57
BRCA	TCGA-D8-A27T	CDH7	SNP	Silent	18	63477101	G	A	38	36
BRCA	TCGA-D8-A27T	SCN2A	SNP	Missense_Mutation	2	166223736	G	A	39	69
BRCA	TCGA-D8-A27T	TMPRSS15	SNP	Missense_Mutation	21	19770556	G	A	45	75
BRCA	TCGA-D8-A27T	TIMP3	SNP	Missense_Mutation	22	33255330	C	A	23	69
BRCA	TCGA-D8-A27T	ARMCX5	SNP	Silent	23	101858272	C	T	32	43
BRCA	TCGA-D8-A27T	PGK1	SNP	Missense_Mutation	23	77378415	T	C	64	66
BRCA	TCGA-D8-A27T	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-D8-A27T	MFI2	SNP	Missense_Mutation	3	196754653	C	G	27	52
BRCA	TCGA-D8-A27T	GRIA2	SNP	Missense_Mutation	4	158238831	G	A	48	96
BRCA	TCGA-D8-A27T	KLHL5	SNP	Silent	4	39114838	A	G	7	50
BRCA	TCGA-D8-A27T	SLC44A4	DEL	In_Frame_Del	6	31832672	AAG	-	1	75
BRCA	TCGA-D8-A27T	PTPRN2	SNP	Missense_Mutation	7	157959701	G	T	42	62
BRCA	TCGA-D8-A27T	GUSB	SNP	Missense_Mutation	7	65445321	C	T	17	56
BRCA	TCGA-D8-A27T	GAL3ST4	SNP	Missense_Mutation	7	99757738	C	T	27	84
BRCA	TCGA-D8-A27T	EHMT1	SNP	Missense_Mutation	9	140707938	G	A	40	80
BRCA	TCGA-D8-A27W	ST6GALNAC5	SNP	Missense_Mutation	1	77528749	G	A	38	99
BRCA	TCGA-D8-A27W	SHANK2	SNP	Missense_Mutation	11	70507831	C	G	29	92
BRCA	TCGA-D8-A27W	FBXO34	SNP	Missense_Mutation	14	55817206	T	C	57	51
BRCA	TCGA-D8-A27W	SEMA6D	SNP	Silent	15	48052559	G	A	42	64
BRCA	TCGA-D8-A27W	IGFBP4	SNP	Missense_Mutation	17	38610201	G	A	37	92
BRCA	TCGA-D8-A27W	ASAP2	SNP	Missense_Mutation	2	9467980	A	G	3	91
BRCA	TCGA-D8-A27W	TSHZ2	SNP	Silent	20	51872712	C	T	18	61
BRCA	TCGA-D8-A27W	KIAA2022	SNP	Missense_Mutation	23	73960046	C	T	19	95
BRCA	TCGA-D8-A27W	PLSCR2	SNP	Missense_Mutation	3	146171892	G	A	47	58
BRCA	TCGA-D8-A27W	KCNAB1	SNP	Missense_Mutation	3	156249278	G	A	46	95
BRCA	TCGA-D8-A27W	POU4F2	SNP	Missense_Mutation	4	147561811	G	A	37	87
BRCA	TCGA-D8-A27W	CCKAR	SNP	Missense_Mutation	4	26491823	C	G	31	67
BRCA	TCGA-D8-A27W	ZNF721	SNP	Missense_Mutation	4	437075	C	T	17	79
BRCA	TCGA-D8-A27W	KIF4B	SNP	Missense_Mutation	5	154396151	A	G	11	54
BRCA	TCGA-D8-A27W	RASGEF1C	SNP	Missense_Mutation	5	179563506	G	A	39	62
BRCA	TCGA-D8-A27W	CENPW	SNP	Splice_Site	6	126669611	G	A	35	76
BRCA	TCGA-D8-A27W	LRRC16A	SNP	Missense_Mutation	6	25450164	G	A	38	93
BRCA	TCGA-D8-A27W	MYLK4	SNP	Missense_Mutation	6	2689172	G	A	39	85
BRCA	TCGA-D8-A27W	MDGA1	SNP	Missense_Mutation	6	37620076	G	C	45	84
BRCA	TCGA-D8-A27W	RPA3	SNP	Missense_Mutation	7	7680043	C	T	30	82
BRCA	TCGA-D8-A27W	NXPH1	SNP	Missense_Mutation	7	8790657	C	T	19	74
BRCA	TCGA-D8-A27W	CEL	SNP	Missense_Mutation	9	135944591	G	A	48	49
BRCA	TCGA-D8-A27W	AGTPBP1	SNP	Missense_Mutation	9	88272487	G	A	39	100
BRCA	TCGA-E2-A105	ETV3	SNP	Missense_Mutation	1	157105452	G	A	41	83
BRCA	TCGA-E2-A105	IFI16	SNP	Missense_Mutation	1	159021640	G	C	36	74
BRCA	TCGA-E2-A105	SPEN	INS	Frame_Shift_Ins	1	16202800	-	ATAGAGATCCTCGA	53	90
BRCA	TCGA-E2-A105	FZD8	SNP	Missense_Mutation	10	35929970	G	C	42	91
BRCA	TCGA-E2-A105	PRKG1	SNP	Missense_Mutation	10	52834557	G	T	35	59
BRCA	TCGA-E2-A105	GOLGA7B	SNP	Silent	10	99619286	C	T	27	50
BRCA	TCGA-E2-A105	MEN1	DEL	Frame_Shift_Del	11	64577330	AGAC	-	15	55
BRCA	TCGA-E2-A105	MYO1H	SNP	Missense_Mutation	12	109831184	G	A	39	79
BRCA	TCGA-E2-A105	ATP2A2	SNP	Silent	12	110778619	C	T	25	56
BRCA	TCGA-E2-A105	OAS1	SNP	Missense_Mutation	12	113357242	C	G	29	46
BRCA	TCGA-E2-A105	ZCCHC8	SNP	Missense_Mutation	12	122966134	T	C	57	89
BRCA	TCGA-E2-A105	CACNA1C	SNP	Missense_Mutation	12	2714315	A	G	2	89
BRCA	TCGA-E2-A105	MBD6	INS	Frame_Shift_Ins	12	57918753	-	TTGGCCCC	56	64
BRCA	TCGA-E2-A105	DDX11L8	SNP	Nonsense_Mutation	12	9464152	C	T	21	74
BRCA	TCGA-E2-A105	SLC10A2	SNP	Missense_Mutation	13	103698518	T	C	61	48
BRCA	TCGA-E2-A105	SHISA2	SNP	Missense_Mutation	13	26621019	G	A	39	61
BRCA	TCGA-E2-A105	OR4M1	SNP	Missense_Mutation	14	20249411	T	G	59	53
BRCA	TCGA-E2-A105	GPHN	SNP	Missense_Mutation	14	67610087	A	G	10	89
BRCA	TCGA-E2-A105	UNC79	SNP	Nonsense_Mutation	14	94097185	C	T	19	70
BRCA	TCGA-E2-A105	ZNF18	SNP	Silent	17	11881385	A	G	9	49
BRCA	TCGA-E2-A105	NCOR1	DEL	Frame_Shift_Del	17	16068397	A	-	9	89
BRCA	TCGA-E2-A105	CCDC144A	SNP	Missense_Mutation	17	16593944	G	A	38	46
BRCA	TCGA-E2-A105	KRTAP9-9	SNP	Missense_Mutation	17	39412058	C	T	23	49
BRCA	TCGA-E2-A105	MSI2	SNP	Missense_Mutation	17	55478762	T	A	49	90
BRCA	TCGA-E2-A105	LPHN1	SNP	Missense_Mutation	19	14274041	T	C	57	60
BRCA	TCGA-E2-A105	MYO9B	SNP	Missense_Mutation	19	17317135	C	G	22	97
BRCA	TCGA-E2-A105	FPR1	SNP	Missense_Mutation	19	52249706	G	A	37	55
BRCA	TCGA-E2-A105	ZNF814	SNP	Missense_Mutation	19	58384888	G	A	38	55
BRCA	TCGA-E2-A105	MUC16	SNP	Silent	19	8982254	C	T	25	49
BRCA	TCGA-E2-A105	SP3	DEL	Splice_site	2	174777994	TCTAAA	-	54	64
BRCA	TCGA-E2-A105	ANKAR	SNP	Missense_Mutation	2	190560903	G	C	48	86
BRCA	TCGA-E2-A105	SAG	SNP	Missense_Mutation	2	234235788	G	C	44	57
BRCA	TCGA-E2-A105	PASK	SNP	Missense_Mutation	2	242066754	C	T	23	38
BRCA	TCGA-E2-A105	DQX1	SNP	Missense_Mutation	2	74746321	G	T	33	59
BRCA	TCGA-E2-A105	SLC4A11	SNP	Missense_Mutation	20	3209309	C	T	28	73
BRCA	TCGA-E2-A105	CTNNBL1	SNP	Missense_Mutation	20	36488710	G	A	35	93
BRCA	TCGA-E2-A105	RTEL1	SNP	Silent	20	62311271	G	A	47	69
BRCA	TCGA-E2-A105	RTEL1	SNP	Missense_Mutation	20	62312019	G	A	46	50
BRCA	TCGA-E2-A105	PLXNB2	DEL	In_Frame_Del	22	50720419	GTG	-	40	79
BRCA	TCGA-E2-A105	TLR8	SNP	Nonsense_Mutation	23	12937622	C	T	29	55
BRCA	TCGA-E2-A105	FMR1	SNP	Silent	23	147024827	C	T	27	51
BRCA	TCGA-E2-A105	MAGEB6	SNP	Missense_Mutation	23	26212547	T	G	57	60
BRCA	TCGA-E2-A105	FAM123B	SNP	Silent	23	63411643	G	A	33	55
BRCA	TCGA-E2-A105	CCDC37	SNP	Splice_Site	3	126137618	G	A	40	87
BRCA	TCGA-E2-A105	NLGN1	SNP	Missense_Mutation	3	173998327	G	T	40	100
BRCA	TCGA-E2-A105	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A105	DAG1	SNP	Missense_Mutation	3	49568483	C	T	32	70
BRCA	TCGA-E2-A105	TKT	SNP	Missense_Mutation	3	53263320	C	T	23	100
BRCA	TCGA-E2-A105	TCF7	SNP	Missense_Mutation	5	133473797	C	T	19	50
BRCA	TCGA-E2-A105	GABRA6	SNP	Silent	5	161116329	C	T	29	65
BRCA	TCGA-E2-A105	LOC100289470	SNP	Missense_Mutation	5	178951453	G	A	39	38
BRCA	TCGA-E2-A105	TMEM174	SNP	Missense_Mutation	5	72469563	G	A	39	65
BRCA	TCGA-E2-A105	C6orf225	SNP	Missense_Mutation	6	112421934	T	A	61	72
BRCA	TCGA-E2-A105	STX7	SNP	Silent	6	132792638	C	T	20	48
BRCA	TCGA-E2-A105	COL19A1	SNP	Missense_Mutation	6	70733563	T	G	51	56
BRCA	TCGA-E2-A105	SDK1	SNP	Missense_Mutation	7	4056882	G	A	33	100
BRCA	TCGA-E2-A105	ZNF804B	DEL	Frame_Shift_Del	7	88962693	C	-	18	95
BRCA	TCGA-E2-A105	RP1	SNP	Silent	8	55539493	G	A	47	50
BRCA	TCGA-E2-A105	LRRC8A	SNP	Missense_Mutation	9	131670265	G	C	36	69
BRCA	TCGA-E2-A105	PLIN2	SNP	Missense_Mutation	9	19126264	G	A	40	100
BRCA	TCGA-E2-A105	FAM189A2	SNP	Silent	9	71998865	A	T	12	55
BRCA	TCGA-E2-A105	C9orf64	SNP	Missense_Mutation	9	86571300	G	T	38	52
BRCA	TCGA-E2-A107	TADA1	SNP	Silent	1	166839061	C	T	28	66
BRCA	TCGA-E2-A107	KIF14	SNP	Missense_Mutation	1	200567540	T	A	52	59
BRCA	TCGA-E2-A107	RERE	SNP	Silent	1	8422899	C	T	31	51
BRCA	TCGA-E2-A107	PIWIL1	SNP	Silent	12	130833916	G	A	33	49
BRCA	TCGA-E2-A107	GLIPR1	SNP	Missense_Mutation	12	75892695	A	G	14	50
BRCA	TCGA-E2-A107	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-E2-A107	CHD2	SNP	Missense_Mutation	15	93527570	T	G	64	88
BRCA	TCGA-E2-A107	MAPK8IP3	SNP	Missense_Mutation	16	1812950	A	G	2	59
BRCA	TCGA-E2-A107	CDH1	SNP	Splice_site	16	68845762	G	A	35	97
BRCA	TCGA-E2-A107	ENSG00000228443	SNP	Silent	16	953592	G	A	47	68
BRCA	TCGA-E2-A107	TBC1D3B	SNP	Silent	17	34497337	G	A	37	61
BRCA	TCGA-E2-A107	CLUL1	SNP	Missense_Mutation	18	645027	G	A	45	60
BRCA	TCGA-E2-A107	SLC9A4	SNP	Missense_Mutation	2	103120013	G	T	41	100
BRCA	TCGA-E2-A107	RALGAPB	DEL	Frame_Shift_Del	20	37186945	CAAA	-	25	79
BRCA	TCGA-E2-A107	LOC100288309	DEL	Frame_Shift_Del	22	19164060	CCCCTTCCCCT	-	22	30
BRCA	TCGA-E2-A107	GPRASP2	SNP	Missense_Mutation	23	101971061	G	A	38	45
BRCA	TCGA-E2-A107	ACSL4	SNP	Silent	23	108926449	C	T	20	56
BRCA	TCGA-E2-A107	RPGR	SNP	Missense_Mutation	23	38182684	G	A	45	95
BRCA	TCGA-E2-A107	WNK3	SNP	Splice_site	23	54337552	G	A	40	97
BRCA	TCGA-E2-A107	ZDHHC15	SNP	Splice_site	23	74637024	G	T	43	73
BRCA	TCGA-E2-A107	MSL2	DEL	Frame_Shift_Del	3	135871094	G	-	35	69
BRCA	TCGA-E2-A107	FAT4	SNP	Silent	4	126372689	C	T	19	45
BRCA	TCGA-E2-A107	CEP44	SNP	Silent	4	175224934	C	T	30	47
BRCA	TCGA-E2-A107	DDX46	SNP	Missense_Mutation	5	134147500	C	A	32	58
BRCA	TCGA-E2-A107	PAIP2	SNP	Silent	5	138699536	C	T	19	50
BRCA	TCGA-E2-A107	PCDHB6	SNP	Missense_Mutation	5	140531214	G	A	38	45
BRCA	TCGA-E2-A107	HMGCS1	SNP	Missense_Mutation	5	43295926	A	G	8	92
BRCA	TCGA-E2-A107	ENC1	SNP	Missense_Mutation	5	73931474	A	T	8	48
BRCA	TCGA-E2-A107	ADAT2	SNP	Silent	6	143759817	G	A	37	43
BRCA	TCGA-E2-A107	KIAA0240	INS	Frame_Shift_Ins	6	42797341	-	T	20	74
BRCA	TCGA-E2-A107	GALNT11	SNP	Missense_Mutation	7	151810410	G	C	41	78
BRCA	TCGA-E2-A107	ZHX1	SNP	Missense_Mutation	8	124265786	C	T	29	99
BRCA	TCGA-E2-A107	ADAMTSL1	SNP	Missense_Mutation	9	18574047	G	A	44	100
BRCA	TCGA-E2-A108	WNT2B	SNP	Silent	1	113052034	G	C	45	57
BRCA	TCGA-E2-A108	SYT6	SNP	Splice_Site	1	114640500	C	T	32	100
BRCA	TCGA-E2-A108	CD101	SNP	Missense_Mutation	1	117568312	G	C	46	58
BRCA	TCGA-E2-A108	CERS2	SNP	Missense_Mutation	1	150939642	T	C	51	91
BRCA	TCGA-E2-A108	TCHHL1	SNP	Missense_Mutation	1	152058642	C	G	29	50
BRCA	TCGA-E2-A108	ASH1L	SNP	Silent	1	155311856	G	A	33	76
BRCA	TCGA-E2-A108	SLAMF1	SNP	Silent	1	160582299	C	T	28	50
BRCA	TCGA-E2-A108	CACNA1E	SNP	Missense_Mutation	1	181767528	G	A	39	97
BRCA	TCGA-E2-A108	EDEM3	SNP	Missense_Mutation	1	184686738	C	G	32	99
BRCA	TCGA-E2-A108	FAM5C	SNP	Missense_Mutation	1	190195266	G	A	33	95
BRCA	TCGA-E2-A108	DUSP10	SNP	Silent	1	221913018	G	C	45	75
BRCA	TCGA-E2-A108	SPRTN	SNP	Nonsense_Mutation	1	231474280	C	T	29	73
BRCA	TCGA-E2-A108	HEATR1	SNP	Missense_Mutation	1	236746159	C	G	30	90
BRCA	TCGA-E2-A108	TCEB3	SNP	Missense_Mutation	1	24086048	A	C	12	55
BRCA	TCGA-E2-A108	ZNF695	SNP	Nonsense_Mutation	1	247150838	C	A	29	43
BRCA	TCGA-E2-A108	TRIM58	SNP	Silent	1	248028177	G	A	45	57
BRCA	TCGA-E2-A108	PFKFB3	SNP	Missense_Mutation	10	6262763	G	A	37	100
BRCA	TCGA-E2-A108	POLR3A	SNP	Missense_Mutation	10	79784369	G	C	45	97
BRCA	TCGA-E2-A108	PLCE1	DEL	In_Frame_Del	10	95930961	CCAATT	-	26	98
BRCA	TCGA-E2-A108	CCDC34	SNP	Nonsense_Mutation	11	27379074	G	C	45	54
BRCA	TCGA-E2-A108	INTS5	SNP	Missense_Mutation	11	62414645	G	T	45	69
BRCA	TCGA-E2-A108	INTS5	SNP	Missense_Mutation	11	62415402	G	A	45	71
BRCA	TCGA-E2-A108	INTS5	SNP	Missense_Mutation	11	62417233	G	C	41	58
BRCA	TCGA-E2-A108	NAALADL1	SNP	Missense_Mutation	11	64813656	C	T	25	60
BRCA	TCGA-E2-A108	PHC1	SNP	Missense_Mutation	12	9070338	C	G	32	95
BRCA	TCGA-E2-A108	ZMYM2	SNP	Missense_Mutation	13	20641001	G	A	33	88
BRCA	TCGA-E2-A108	ZMYM2	SNP	Missense_Mutation	13	20657091	T	C	63	68
BRCA	TCGA-E2-A108	FRY	SNP	Missense_Mutation	13	32811934	G	A	37	100
BRCA	TCGA-E2-A108	SPTB	SNP	Silent	14	65263386	C	T	29	57
BRCA	TCGA-E2-A108	TMEM87A	SNP	Missense_Mutation	15	42564268	G	C	41	54
BRCA	TCGA-E2-A108	UBR1	SNP	Missense_Mutation	15	43244537	C	G	32	84
BRCA	TCGA-E2-A108	AGPHD1	SNP	Missense_Mutation	15	78825858	C	G	32	74
BRCA	TCGA-E2-A108	TXNDC11	SNP	Missense_Mutation	16	11782228	C	A	20	63
BRCA	TCGA-E2-A108	ZNF785	SNP	Silent	16	30596468	G	A	45	42
BRCA	TCGA-E2-A108	HMOX2	SNP	Silent	16	4559694	C	G	30	50
BRCA	TCGA-E2-A108	KCTD19	SNP	Missense_Mutation	16	67325298	G	T	35	80
BRCA	TCGA-E2-A108	CNTNAP1	SNP	Splice_Site	17	40849571	G	C	33	100
BRCA	TCGA-E2-A108	SNX11	SNP	Missense_Mutation	17	46189979	A	G	11	71
BRCA	TCGA-E2-A108	TP53	SNP	Missense_Mutation	17	7577120	C	T	19	94
BRCA	TCGA-E2-A108	LPIN2	SNP	Silent	18	2960806	C	T	29	59
BRCA	TCGA-E2-A108	LAMA1	SNP	Silent	18	7032992	G	C	35	54
BRCA	TCGA-E2-A108	LILRA2	SNP	Missense_Mutation	19	55086977	G	A	37	50
BRCA	TCGA-E2-A108	FSHR	SNP	Missense_Mutation	2	49217745	G	A	41	81
BRCA	TCGA-E2-A108	EPB41L1	SNP	Missense_Mutation	20	34778680	T	G	62	60
BRCA	TCGA-E2-A108	CD40	SNP	Nonsense_Mutation	20	44750513	C	T	29	54
BRCA	TCGA-E2-A108	SMC1A	SNP	Missense_Mutation	23	53430747	C	G	32	93
BRCA	TCGA-E2-A108	INTU	SNP	Missense_Mutation	4	128564824	G	C	33	60
BRCA	TCGA-E2-A108	TLR10	SNP	Silent	4	38775802	T	C	60	48
BRCA	TCGA-E2-A108	GRXCR1	SNP	Missense_Mutation	4	42964964	G	A	40	96
BRCA	TCGA-E2-A108	NDFIP1	SNP	Missense_Mutation	5	141511786	A	T	10	89
BRCA	TCGA-E2-A108	PNISR	SNP	Missense_Mutation	6	99860583	A	G	5	90
BRCA	TCGA-E2-A108	FAM221A	SNP	Silent	7	23729011	C	G	21	57
BRCA	TCGA-E2-A108	ATP6V1B2	SNP	Silent	8	20067922	C	G	30	52
BRCA	TCGA-E2-A108	PTK2B	SNP	Missense_Mutation	8	27293815	C	A	32	79
BRCA	TCGA-E2-A108	STX17	SNP	Missense_Mutation	9	102677570	A	G	16	66
BRCA	TCGA-E2-A108	C9orf41	SNP	Silent	9	77631273	T	C	54	59
BRCA	TCGA-E2-A109	C1orf194	SNP	Missense_Mutation	1	109649741	G	T	44	75
BRCA	TCGA-E2-A109	CSDE1	SNP	Missense_Mutation	1	115276687	G	C	45	86
BRCA	TCGA-E2-A109	C1orf226	DEL	Frame_Shift_Del	1	162351928	GA	-	45	52
BRCA	TCGA-E2-A109	ARHGEF10L	SNP	Missense_Mutation	1	17964425	A	G	7	73
BRCA	TCGA-E2-A109	CDK18	SNP	Missense_Mutation	1	205492722	G	A	39	60
BRCA	TCGA-E2-A109	ECE1	DEL	In_Frame_Del	1	21585236	AGA	-	11	72
BRCA	TCGA-E2-A109	ZFYVE9	DEL	Frame_Shift_Del	1	52703400	G	-	47	73
BRCA	TCGA-E2-A109	CUBN	SNP	Missense_Mutation	10	16878371	T	A	52	52
BRCA	TCGA-E2-A109	PLAU	SNP	Missense_Mutation	10	75672712	G	A	44	88
BRCA	TCGA-E2-A109	CHORDC1	DEL	Frame_Shift_Del	11	89938668	C	-	26	94
BRCA	TCGA-E2-A109	MYO1H	SNP	Missense_Mutation	12	109835562	G	A	39	78
BRCA	TCGA-E2-A109	ANO6	SNP	Missense_Mutation	12	45810499	G	A	40	72
BRCA	TCGA-E2-A109	OSBPL8	SNP	Missense_Mutation	12	76769099	G	T	48	98
BRCA	TCGA-E2-A109	SDR39U1	DEL	Frame_Shift_Del	14	24910883	C	-	17	78
BRCA	TCGA-E2-A109	AKAP6	SNP	Silent	14	33290718	G	A	35	55
BRCA	TCGA-E2-A109	ENSG00000187812	SNP	Missense_Mutation	15	76073206	G	A	37	53
BRCA	TCGA-E2-A109	SCAPER	SNP	Missense_Mutation	15	77067311	G	C	35	62
BRCA	TCGA-E2-A109	NOMO2	SNP	Missense_Mutation	16	18542797	A	C	11	68
BRCA	TCGA-E2-A109	SIAH1	SNP	Missense_Mutation	16	48396255	T	C	60	92
BRCA	TCGA-E2-A109	ADCY7	SNP	Missense_Mutation	16	50334759	C	T	23	61
BRCA	TCGA-E2-A109	ZNF778	SNP	Silent	16	89294298	A	G	4	34
BRCA	TCGA-E2-A109	ZNF276	SNP	Missense_Mutation	16	89804566	C	T	26	59
BRCA	TCGA-E2-A109	WSB1	SNP	Missense_Mutation	17	25637136	C	G	23	57
BRCA	TCGA-E2-A109	TP53	SNP	Missense_Mutation	17	7577538	C	T	23	80
BRCA	TCGA-E2-A109	TNRC6C	SNP	Missense_Mutation	17	76046623	G	A	37	67
BRCA	TCGA-E2-A109	MAPRE2	SNP	Missense_Mutation	18	32720267	C	A	17	69
BRCA	TCGA-E2-A109	LAMA1	SNP	Missense_Mutation	18	7033069	C	A	28	100
BRCA	TCGA-E2-A109	OR7A17	SNP	Missense_Mutation	19	14992035	T	C	51	48
BRCA	TCGA-E2-A109	MYO9B	SNP	Silent	19	17212770	C	T	19	53
BRCA	TCGA-E2-A109	PGLS	SNP	Missense_Mutation	19	17631846	G	T	38	88
BRCA	TCGA-E2-A109	SMG9	SNP	Missense_Mutation	19	44254812	G	T	43	93
BRCA	TCGA-E2-A109	TTYH1	SNP	Missense_Mutation	19	54930398	C	A	22	58
BRCA	TCGA-E2-A109	NLRP7	SNP	Silent	19	55451245	C	T	28	44
BRCA	TCGA-E2-A109	ZNF579	SNP	Missense_Mutation	19	56090537	C	T	27	59
BRCA	TCGA-E2-A109	IL18R1	SNP	Silent	2	103001345	C	T	19	46
BRCA	TCGA-E2-A109	UGT1A4	SNP	Silent	2	234681013	C	T	27	50
BRCA	TCGA-E2-A109	CAPN10	SNP	Silent	2	241535825	C	T	18	52
BRCA	TCGA-E2-A109	ZNF512	INS	Frame_Shift_Ins	2	27806578	-	A	53	47
BRCA	TCGA-E2-A109	XDH	SNP	Missense_Mutation	2	31605877	T	A	56	81
BRCA	TCGA-E2-A109	EFEMP1	SNP	Silent	2	56149540	C	T	21	69
BRCA	TCGA-E2-A109	CHD6	DEL	Frame_Shift_Del	20	40127957	A	-	7	86
BRCA	TCGA-E2-A109	CHKB	SNP	Missense_Mutation	22	51018482	T	G	54	87
BRCA	TCGA-E2-A109	RAB9B	SNP	Silent	23	103080361	G	T	35	51
BRCA	TCGA-E2-A109	CXorf57	SNP	Missense_Mutation	23	105868340	C	G	17	54
BRCA	TCGA-E2-A109	COL4A6	SNP	Missense_Mutation	23	107418928	C	A	30	85
BRCA	TCGA-E2-A109	KIAA1210	SNP	Missense_Mutation	23	118239020	C	A	31	52
BRCA	TCGA-E2-A109	OCRL	SNP	Missense_Mutation	23	128709149	A	T	3	60
BRCA	TCGA-E2-A109	BCORL1	SNP	Silent	23	129171506	G	A	37	20
BRCA	TCGA-E2-A109	OFD1	SNP	Missense_Mutation	23	13764997	A	T	3	58
BRCA	TCGA-E2-A109	DMD	SNP	Missense_Mutation	23	32305754	G	T	46	68
BRCA	TCGA-E2-A109	MED14	SNP	Missense_Mutation	23	40573796	C	T	25	95
BRCA	TCGA-E2-A109	FOXP3	INS	Frame_Shift_Ins	23	49108054	-	AGGCCTG	21	54
BRCA	TCGA-E2-A109	BMP15	SNP	Missense_Mutation	23	50659007	G	T	44	27
BRCA	TCGA-E2-A109	KIAA2022	SNP	Missense_Mutation	23	73961157	G	T	33	73
BRCA	TCGA-E2-A109	KLF15	SNP	Nonsense_Mutation	3	126062722	C	A	31	94
BRCA	TCGA-E2-A109	SOX14	SNP	Missense_Mutation	3	137484051	C	T	27	74
BRCA	TCGA-E2-A109	SHOX2	SNP	Silent	3	157823481	C	T	27	54
BRCA	TCGA-E2-A109	SKIL	SNP	Missense_Mutation	3	170102343	A	G	13	81
BRCA	TCGA-E2-A109	HTR3D	SNP	Missense_Mutation	3	183756031	C	T	19	45
BRCA	TCGA-E2-A109	LEPREL1	SNP	Missense_Mutation	3	189681772	G	C	44	84
BRCA	TCGA-E2-A109	STAC	DEL	Frame_Shift_Del	3	36547281	C	-	26	80
BRCA	TCGA-E2-A109	DHX30	SNP	Missense_Mutation	3	47891166	G	C	36	75
BRCA	TCGA-E2-A109	RNF123	SNP	Missense_Mutation	3	49758302	C	T	32	84
BRCA	TCGA-E2-A109	SPATA4	DEL	Frame_Shift_Del	4	177113974	A	-	5	23
BRCA	TCGA-E2-A109	MSANTD1	SNP	Silent	4	3255096	G	A	38	51
BRCA	TCGA-E2-A109	LPHN3	SNP	Missense_Mutation	4	62936207	C	A	26	100
BRCA	TCGA-E2-A109	PCDHB12	SNP	Silent	5	140590645	C	A	31	43
BRCA	TCGA-E2-A109	HAVCR1	SNP	Missense_Mutation	5	156456795	G	A	41	55
BRCA	TCGA-E2-A109	ATP10B	SNP	Missense_Mutation	5	159992485	C	A	31	77
BRCA	TCGA-E2-A109	PDE10A	SNP	Missense_Mutation	6	165749696	C	A	22	100
BRCA	TCGA-E2-A109	MLLT4	DEL	Frame_Shift_Del	6	168291556	C	-	29	93
BRCA	TCGA-E2-A109	WBSCR17	SNP	Missense_Mutation	7	71036313	T	A	60	84
BRCA	TCGA-E2-A109	ZNF804B	SNP	Missense_Mutation	7	88965288	C	T	30	48
BRCA	TCGA-E2-A109	WISP1	SNP	Missense_Mutation	8	134232988	C	T	27	58
BRCA	TCGA-E2-A109	BAI1	SNP	Missense_Mutation	8	143545758	C	T	27	70
BRCA	TCGA-E2-A109	ELP3	DEL	Frame_Shift_Del	8	27995267	C	-	18	97
BRCA	TCGA-E2-A109	AKNA	SNP	Missense_Mutation	9	117106081	G	A	47	61
BRCA	TCGA-E2-A109	IFT74	DEL	Frame_Shift_Del	9	26984316	A	-	5	90
BRCA	TCGA-E2-A109	TMEM8B	SNP	Missense_Mutation	9	35853682	G	T	43	75
BRCA	TCGA-E2-A109	DIRAS2	SNP	Silent	9	93375798	G	A	33	60
BRCA	TCGA-E2-A10A	OR10Z1	SNP	Missense_Mutation	1	158577134	G	C	41	51
BRCA	TCGA-E2-A10A	GATA3	INS	Frame_Shift_Ins	10	8115922	-	C	6	77
BRCA	TCGA-E2-A10A	NUDT22	SNP	Missense_Mutation	11	63994510	C	G	17	73
BRCA	TCGA-E2-A10A	MYO7A	SNP	Silent	11	76872024	C	T	32	51
BRCA	TCGA-E2-A10A	DAO	SNP	Silent	12	109288095	G	A	38	32
BRCA	TCGA-E2-A10A	DIP2B	SNP	Missense_Mutation	12	51128870	A	G	9	92
BRCA	TCGA-E2-A10A	DIS3	SNP	Silent	13	73349502	C	T	24	53
BRCA	TCGA-E2-A10A	RALGAPA1	SNP	Missense_Mutation	14	36155819	C	T	23	62
BRCA	TCGA-E2-A10A	SNX20	SNP	Silent	16	50709816	C	T	29	47
BRCA	TCGA-E2-A10A	MMP15	SNP	Missense_Mutation	16	58075625	C	A	18	93
BRCA	TCGA-E2-A10A	SLC38A8	SNP	Missense_Mutation	16	84050323	C	T	25	52
BRCA	TCGA-E2-A10A	COL1A1	SNP	Splice_Site	17	48274595	C	T	24	93
BRCA	TCGA-E2-A10A	GDPD1	SNP	Silent	17	57326133	C	T	32	52
BRCA	TCGA-E2-A10A	ACTN4	SNP	Missense_Mutation	19	39216514	G	T	37	93
BRCA	TCGA-E2-A10A	LTBP4	SNP	Nonsense_Mutation	19	41125311	G	T	37	79
BRCA	TCGA-E2-A10A	LILRB2	SNP	Missense_Mutation	19	54784374	C	T	28	47
BRCA	TCGA-E2-A10A	SLC12A5	SNP	Missense_Mutation	20	44665941	G	T	47	96
BRCA	TCGA-E2-A10A	USP11	SNP	Silent	23	47101513	A	G	2	55
BRCA	TCGA-E2-A10A	MAP3K1	INS	Frame_Shift_Ins	5	56152454	-	A	29	51
BRCA	TCGA-E2-A10A	ESR1	DEL	Frame_Shift_Del	6	152129128	CCGT	-	18	52
BRCA	TCGA-E2-A10A	WRNIP1	SNP	Missense_Mutation	6	2785389	G	A	35	71
BRCA	TCGA-E2-A10A	C7orf50	SNP	Missense_Mutation	7	1037383	C	A	26	86
BRCA	TCGA-E2-A10A	MGAM	SNP	Missense_Mutation	7	141752647	G	T	48	46
BRCA	TCGA-E2-A10B	AKR7L	SNP	Missense_Mutation	1	19595111	C	T	29	62
BRCA	TCGA-E2-A10B	MUC2	SNP	Missense_Mutation	11	1101591	C	T	30	70
BRCA	TCGA-E2-A10B	ZBTB3	SNP	Missense_Mutation	11	62520584	C	T	32	75
BRCA	TCGA-E2-A10B	UBC	SNP	Missense_Mutation	12	125396964	G	A	39	90
BRCA	TCGA-E2-A10B	PIWIL1	SNP	Missense_Mutation	12	130834441	G	A	41	85
BRCA	TCGA-E2-A10B	ATP11A	SNP	Missense_Mutation	13	113474225	G	A	38	86
BRCA	TCGA-E2-A10B	NEK3	SNP	Missense_Mutation	13	52707946	C	T	32	68
BRCA	TCGA-E2-A10B	TEP1	SNP	Missense_Mutation	14	20863645	T	G	55	62
BRCA	TCGA-E2-A10B	USP8	SNP	Missense_Mutation	15	50782646	C	G	22	98
BRCA	TCGA-E2-A10B	CRLF3	SNP	Silent	17	29123274	G	A	44	56
BRCA	TCGA-E2-A10B	HGS	SNP	Silent	17	79662007	C	T	25	33
BRCA	TCGA-E2-A10B	PSMG2	SNP	Missense_Mutation	18	12706699	G	A	33	84
BRCA	TCGA-E2-A10B	KRI1	SNP	Silent	19	10670170	C	T	29	51
BRCA	TCGA-E2-A10B	ZNF563	SNP	Missense_Mutation	19	12432110	T	C	57	53
BRCA	TCGA-E2-A10B	HOOK2	SNP	Missense_Mutation	19	12876942	G	A	38	57
BRCA	TCGA-E2-A10B	ZNF85	SNP	Missense_Mutation	19	21131813	G	C	45	47
BRCA	TCGA-E2-A10B	ZNF571	SNP	Missense_Mutation	19	38055672	G	T	36	69
BRCA	TCGA-E2-A10B	ZNF525	SNP	Silent	19	53884186	A	G	4	42
BRCA	TCGA-E2-A10B	POTED	SNP	Missense_Mutation	21	15011930	G	C	33	61
BRCA	TCGA-E2-A10B	PRR5-ARHGAP8	SNP	Silent	22	45204250	C	T	19	52
BRCA	TCGA-E2-A10B	CXorf57	SNP	Silent	23	105905447	G	A	37	45
BRCA	TCGA-E2-A10B	ERCC6L	SNP	Missense_Mutation	23	71425081	G	T	35	60
BRCA	TCGA-E2-A10B	SLCO2A1	SNP	Silent	3	133661577	G	A	39	35
BRCA	TCGA-E2-A10B	AADAC	SNP	Nonsense_Mutation	3	151535239	C	A	29	87
BRCA	TCGA-E2-A10B	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A10B	TET2	SNP	Missense_Mutation	4	106190828	C	T	29	100
BRCA	TCGA-E2-A10B	PCDH7	SNP	Nonsense_Mutation	4	30921826	C	T	29	99
BRCA	TCGA-E2-A10B	WDFY3	DEL	Frame_Shift_Del	4	85657344	ATTA	-	16	52
BRCA	TCGA-E2-A10B	FNIP1	SNP	Missense_Mutation	5	130834231	C	G	32	97
BRCA	TCGA-E2-A10B	FAT2	SNP	Missense_Mutation	5	150946518	C	A	18	75
BRCA	TCGA-E2-A10B	LAMA2	SNP	Missense_Mutation	6	129609065	C	A	24	77
BRCA	TCGA-E2-A10B	HIST1H2AE	SNP	Silent	6	26217379	G	T	45	63
BRCA	TCGA-E2-A10B	LAMB4	SNP	Splice_site	7	107710329	A	C	3	84
BRCA	TCGA-E2-A10B	ASB15	SNP	Missense_Mutation	7	123269363	G	A	47	100
BRCA	TCGA-E2-A10B	DGKB	SNP	Silent	7	14797340	T	C	61	52
BRCA	TCGA-E2-A10B	POU6F2	SNP	Missense_Mutation	7	39500226	C	T	27	100
BRCA	TCGA-E2-A10B	HRSP12	SNP	Missense_Mutation	8	99118536	C	T	29	88
BRCA	TCGA-E2-A10B	AQP3	SNP	Silent	9	33443389	C	G	25	50
BRCA	TCGA-E2-A10B	VPS13A	SNP	Missense_Mutation	9	79931137	A	G	1	89
BRCA	TCGA-E2-A10C	TAF13	SNP	Silent	1	109607256	G	A	33	56
BRCA	TCGA-E2-A10C	EXOSC10	SNP	Missense_Mutation	1	11137494	C	G	30	84
BRCA	TCGA-E2-A10C	DENND2D	SNP	Missense_Mutation	1	111737258	G	C	45	73
BRCA	TCGA-E2-A10C	HIST2H2BE	SNP	Missense_Mutation	1	149858071	G	C	33	66
BRCA	TCGA-E2-A10C	FDPS	SNP	Missense_Mutation	1	155282164	C	A	20	67
BRCA	TCGA-E2-A10C	SYT11	SNP	Missense_Mutation	1	155838071	C	G	32	81
BRCA	TCGA-E2-A10C	CDK11B	SNP	Missense_Mutation	1	1573894	C	G	30	89
BRCA	TCGA-E2-A10C	IFI16	SNP	Missense_Mutation	1	159021644	A	T	3	70
BRCA	TCGA-E2-A10C	RGS4	SNP	Nonsense_Mutation	1	163044339	C	T	29	63
BRCA	TCGA-E2-A10C	SCYL3	SNP	Nonsense_Mutation	1	169831924	C	A	32	61
BRCA	TCGA-E2-A10C	PRRX1	SNP	Missense_Mutation	1	170695469	G	C	41	94
BRCA	TCGA-E2-A10C	METTL13	SNP	Nonsense_Mutation	1	171753159	G	T	45	93
BRCA	TCGA-E2-A10C	CACNA1E	SNP	Missense_Mutation	1	181727119	C	G	32	76
BRCA	TCGA-E2-A10C	RGS8	SNP	Missense_Mutation	1	182616022	T	A	59	90
BRCA	TCGA-E2-A10C	TPR	SNP	Missense_Mutation	1	186283810	C	G	32	86
BRCA	TCGA-E2-A10C	TPR	SNP	Missense_Mutation	1	186316447	C	T	32	96
BRCA	TCGA-E2-A10C	KCNT2	SNP	Nonsense_Mutation	1	196295947	C	A	29	100
BRCA	TCGA-E2-A10C	CAMSAP2	SNP	Missense_Mutation	1	200818343	G	A	45	98
BRCA	TCGA-E2-A10C	LMOD1	SNP	Missense_Mutation	1	201869306	C	T	29	47
BRCA	TCGA-E2-A10C	TRAF3IP3	SNP	Silent	1	209953885	G	A	33	53
BRCA	TCGA-E2-A10C	IRF6	SNP	Missense_Mutation	1	209974721	C	G	21	100
BRCA	TCGA-E2-A10C	NBPF3	SNP	Silent	1	21800026	C	T	29	52
BRCA	TCGA-E2-A10C	HHIPL2	SNP	Silent	1	222721350	G	A	33	65
BRCA	TCGA-E2-A10C	LEFTY2	SNP	Missense_Mutation	1	226128645	G	A	38	67
BRCA	TCGA-E2-A10C	WNT3A	SNP	Missense_Mutation	1	228246733	C	T	31	98
BRCA	TCGA-E2-A10C	PEX10	SNP	Missense_Mutation	1	2340225	G	A	37	50
BRCA	TCGA-E2-A10C	HTR1D	SNP	Silent	1	23519996	G	A	45	60
BRCA	TCGA-E2-A10C	RYR2	SNP	Missense_Mutation	1	237670043	G	C	33	87
BRCA	TCGA-E2-A10C	GRHL3	SNP	Missense_Mutation	1	24664133	G	C	45	75
BRCA	TCGA-E2-A10C	PHACTR4	SNP	Missense_Mutation	1	28800206	G	A	45	62
BRCA	TCGA-E2-A10C	PEF1	SNP	Missense_Mutation	1	32098889	C	T	29	92
BRCA	TCGA-E2-A10C	ZBTB8B	SNP	Missense_Mutation	1	32950879	G	C	45	82
BRCA	TCGA-E2-A10C	CPT2	SNP	Missense_Mutation	1	53668050	G	A	45	48
BRCA	TCGA-E2-A10C	HEATR8	SNP	Silent	1	55145599	G	A	45	51
BRCA	TCGA-E2-A10C	C1orf168	SNP	Silent	1	57189333	G	A	45	60
BRCA	TCGA-E2-A10C	CHD5	SNP	Missense_Mutation	1	6195315	G	A	39	63
BRCA	TCGA-E2-A10C	LHX8	SNP	Missense_Mutation	1	75622602	C	T	19	96
BRCA	TCGA-E2-A10C	PPRC1	SNP	Missense_Mutation	10	103906618	A	G	8	83
BRCA	TCGA-E2-A10C	CELF2	SNP	Silent	10	11299828	G	A	45	65
BRCA	TCGA-E2-A10C	PAOX	SNP	Missense_Mutation	10	135194991	G	A	45	41
BRCA	TCGA-E2-A10C	CUBN	SNP	Missense_Mutation	10	17087062	C	G	30	50
BRCA	TCGA-E2-A10C	PTPLA	SNP	Missense_Mutation	10	17645931	C	G	29	83
BRCA	TCGA-E2-A10C	ACBD5	SNP	Splice_site	10	27486360	C	G	29	69
BRCA	TCGA-E2-A10C	WAC	SNP	Missense_Mutation	10	28908478	G	C	45	78
BRCA	TCGA-E2-A10C	FRMPD2	SNP	Missense_Mutation	10	49414927	G	A	45	65
BRCA	TCGA-E2-A10C	ERCC6	SNP	Silent	10	50678496	C	T	32	55
BRCA	TCGA-E2-A10C	ERCC6	SNP	Missense_Mutation	10	50736490	C	G	32	64
BRCA	TCGA-E2-A10C	LRRTM3	SNP	Silent	10	68687691	C	A	32	65
BRCA	TCGA-E2-A10C	STOX1	SNP	Missense_Mutation	10	70646331	G	C	33	99
BRCA	TCGA-E2-A10C	VCL	SNP	Nonsense_Mutation	10	75832608	C	A	29	99
BRCA	TCGA-E2-A10C	POLR3A	SNP	Silent	10	79745020	C	T	29	64
BRCA	TCGA-E2-A10C	NPAT	SNP	Missense_Mutation	11	108057261	G	C	35	80
BRCA	TCGA-E2-A10C	ATM	SNP	Missense_Mutation	11	108170512	G	A	33	80
BRCA	TCGA-E2-A10C	HYOU1	SNP	Silent	11	118926849	C	T	32	75
BRCA	TCGA-E2-A10C	TBRG1	SNP	Silent	11	124495579	G	A	33	62
BRCA	TCGA-E2-A10C	FLI1	SNP	Missense_Mutation	11	128651915	G	C	33	91
BRCA	TCGA-E2-A10C	NCAPD3	SNP	Silent	11	134047318	C	T	32	62
BRCA	TCGA-E2-A10C	TSSC4	SNP	Missense_Mutation	11	2424787	G	C	41	63
BRCA	TCGA-E2-A10C	RAG1	SNP	Missense_Mutation	11	36597333	G	C	33	100
BRCA	TCGA-E2-A10C	FNBP4	SNP	Missense_Mutation	11	47772520	G	A	33	71
BRCA	TCGA-E2-A10C	OR51A7	SNP	Missense_Mutation	11	4929293	G	C	33	63
BRCA	TCGA-E2-A10C	TRIM51	SNP	Silent	11	55657466	C	T	29	54
BRCA	TCGA-E2-A10C	ATL3	SNP	Silent	11	63438846	G	A	33	49
BRCA	TCGA-E2-A10C	STIP1	SNP	Missense_Mutation	11	63965415	G	A	37	98
BRCA	TCGA-E2-A10C	OR6A2	SNP	Nonsense_Mutation	11	6816236	G	T	37	70
BRCA	TCGA-E2-A10C	NLRP14	SNP	Missense_Mutation	11	7067969	G	C	33	69
BRCA	TCGA-E2-A10C	RNF169	SNP	Missense_Mutation	11	74500681	C	G	29	64
BRCA	TCGA-E2-A10C	C11orf30	SNP	Silent	11	76175025	C	A	29	67
BRCA	TCGA-E2-A10C	C11orf30	SNP	Nonsense_Mutation	11	76175093	C	G	29	98
BRCA	TCGA-E2-A10C	RPLP2	SNP	Missense_Mutation	11	812762	G	C	33	82
BRCA	TCGA-E2-A10C	FOLR4	SNP	Missense_Mutation	11	94038866	G	A	37	51
BRCA	TCGA-E2-A10C	DDX55	SNP	Missense_Mutation	12	124101077	G	A	45	99
BRCA	TCGA-E2-A10C	PLEKHA5	SNP	Missense_Mutation	12	19467754	G	C	33	96
BRCA	TCGA-E2-A10C	ITPR2	SNP	Silent	12	26748416	G	A	33	68
BRCA	TCGA-E2-A10C	IPO8	SNP	Silent	12	30834604	C	A	29	64
BRCA	TCGA-E2-A10C	KIAA1551	SNP	Missense_Mutation	12	32138135	G	A	37	61
BRCA	TCGA-E2-A10C	SLC2A13	SNP	Missense_Mutation	12	40265720	C	T	29	100
BRCA	TCGA-E2-A10C	FAM186A	SNP	Missense_Mutation	12	50724375	G	C	33	72
BRCA	TCGA-E2-A10C	DIP2B	SNP	Silent	12	51076995	G	A	45	58
BRCA	TCGA-E2-A10C	SCN8A	SNP	Missense_Mutation	12	52078046	G	C	33	99
BRCA	TCGA-E2-A10C	OR6C2	SNP	Splice_site	12	55846936	G	C	33	45
BRCA	TCGA-E2-A10C	SUOX	SNP	Missense_Mutation	12	56397621	G	A	45	97
BRCA	TCGA-E2-A10C	FOXJ2	SNP	Silent	12	8200740	C	T	22	59
BRCA	TCGA-E2-A10C	FGD6	SNP	Missense_Mutation	12	95498801	G	A	41	99
BRCA	TCGA-E2-A10C	PCCA	SNP	Missense_Mutation	13	100915005	C	G	29	96
BRCA	TCGA-E2-A10C	ATP4B	SNP	Silent	13	114303695	C	T	32	53
BRCA	TCGA-E2-A10C	TUBA3C	SNP	Silent	13	19751442	G	T	45	45
BRCA	TCGA-E2-A10C	TUBA3C	SNP	Nonsense_Mutation	13	19751650	G	T	45	81
BRCA	TCGA-E2-A10C	CENPJ	SNP	Missense_Mutation	13	25480951	C	T	30	64
BRCA	TCGA-E2-A10C	PROSER1	SNP	Silent	13	39587532	G	A	45	61
BRCA	TCGA-E2-A10C	TRIM13	SNP	Missense_Mutation	13	50587226	G	A	45	57
BRCA	TCGA-E2-A10C	RTL1	SNP	Missense_Mutation	14	101349406	C	T	29	62
BRCA	TCGA-E2-A10C	AHNAK2	SNP	Missense_Mutation	14	105410836	G	A	37	61
BRCA	TCGA-E2-A10C	AHNAK2	SNP	Silent	14	105418953	C	G	29	45
BRCA	TCGA-E2-A10C	OR4K15	SNP	Silent	14	20444652	G	C	45	63
BRCA	TCGA-E2-A10C	OR4K14	SNP	Missense_Mutation	14	20483291	C	T	31	44
BRCA	TCGA-E2-A10C	ABHD4	SNP	Missense_Mutation	14	23072319	G	A	33	65
BRCA	TCGA-E2-A10C	PSMC6	SNP	Missense_Mutation	14	53173920	G	A	45	86
BRCA	TCGA-E2-A10C	PELI2	SNP	Missense_Mutation	14	56757079	G	A	37	69
BRCA	TCGA-E2-A10C	HIF1A	SNP	Silent	14	62193473	C	G	29	51
BRCA	TCGA-E2-A10C	SYNE2	SNP	Missense_Mutation	14	64669652	G	A	33	100
BRCA	TCGA-E2-A10C	KIAA0247	SNP	Missense_Mutation	14	70175690	T	G	59	74
BRCA	TCGA-E2-A10C	C14orf118	SNP	Silent	14	76621084	C	G	29	49
BRCA	TCGA-E2-A10C	ISM2	SNP	Silent	14	77942061	G	A	41	64
BRCA	TCGA-E2-A10C	ATP10A	SNP	Missense_Mutation	15	25924558	G	A	45	69
BRCA	TCGA-E2-A10C	RYR3	SNP	Splice_Site	15	33765740	G	T	44	96
BRCA	TCGA-E2-A10C	ZFYVE19	SNP	Silent	15	41099931	G	C	41	56
BRCA	TCGA-E2-A10C	TP53BP1	SNP	Silent	15	43700247	G	C	33	48
BRCA	TCGA-E2-A10C	SPG11	SNP	Silent	15	44900705	G	A	33	49
BRCA	TCGA-E2-A10C	B2M	SNP	Missense_Mutation	15	45003787	C	T	32	52
BRCA	TCGA-E2-A10C	SLC28A2	SNP	Nonsense_Mutation	15	45564978	C	T	29	79
BRCA	TCGA-E2-A10C	BNC1	SNP	Missense_Mutation	15	83933455	A	T	8	93
BRCA	TCGA-E2-A10C	RLBP1	SNP	Missense_Mutation	15	89762200	C	T	32	75
BRCA	TCGA-E2-A10C	BLM	SNP	Silent	15	91312739	G	A	45	58
BRCA	TCGA-E2-A10C	BLM	SNP	Missense_Mutation	15	91354615	C	T	30	47
BRCA	TCGA-E2-A10C	TTC23	SNP	Missense_Mutation	15	99715275	G	A	45	79
BRCA	TCGA-E2-A10C	DEXI	SNP	Silent	16	11035707	G	A	45	51
BRCA	TCGA-E2-A10C	TMC5	SNP	Missense_Mutation	16	19468194	C	G	29	60
BRCA	TCGA-E2-A10C	TMC5	SNP	Missense_Mutation	16	19468321	C	T	29	55
BRCA	TCGA-E2-A10C	ZP2	SNP	Silent	16	21213434	C	T	31	45
BRCA	TCGA-E2-A10C	ABCA3	SNP	Missense_Mutation	16	2336827	G	A	33	96
BRCA	TCGA-E2-A10C	APOBR	SNP	Missense_Mutation	16	28508304	G	A	41	50
BRCA	TCGA-E2-A10C	APOBR	SNP	Missense_Mutation	16	28508563	G	A	33	49
BRCA	TCGA-E2-A10C	ZSCAN10	SNP	Missense_Mutation	16	3139999	G	T	41	79
BRCA	TCGA-E2-A10C	C16orf58	SNP	Missense_Mutation	16	31503569	C	T	32	77
BRCA	TCGA-E2-A10C	ZNF267	SNP	Missense_Mutation	16	31926785	G	C	33	54
BRCA	TCGA-E2-A10C	ZNF267	SNP	Missense_Mutation	16	31926979	G	A	34	58
BRCA	TCGA-E2-A10C	SLX4	SNP	Missense_Mutation	16	3633370	C	G	32	56
BRCA	TCGA-E2-A10C	BBS2	SNP	Missense_Mutation	16	56543943	G	C	33	76
BRCA	TCGA-E2-A10C	NUP93	SNP	Missense_Mutation	16	56782199	G	A	45	100
BRCA	TCGA-E2-A10C	NLRC5	SNP	Silent	16	57070087	G	T	41	61
BRCA	TCGA-E2-A10C	CX3CL1	SNP	Missense_Mutation	16	57416684	G	A	45	51
BRCA	TCGA-E2-A10C	CNGB1	SNP	Missense_Mutation	16	57994422	C	T	29	53
BRCA	TCGA-E2-A10C	NFAT5	SNP	Splice_Site	16	69718792	G	T	34	53
BRCA	TCGA-E2-A10C	HP	SNP	Silent	16	72094180	C	T	32	55
BRCA	TCGA-E2-A10C	DHX38	SNP	Missense_Mutation	16	72133171	G	A	45	93
BRCA	TCGA-E2-A10C	PMFBP1	SNP	Missense_Mutation	16	72166725	C	T	30	64
BRCA	TCGA-E2-A10C	MYH8	SNP	Silent	17	10312474	G	A	38	35
BRCA	TCGA-E2-A10C	RPA1	SNP	Missense_Mutation	17	1795220	G	A	41	84
BRCA	TCGA-E2-A10C	PAFAH1B1	SNP	Missense_Mutation	17	2569362	C	G	32	95
BRCA	TCGA-E2-A10C	NOS2	SNP	Missense_Mutation	17	26101330	G	A	45	100
BRCA	TCGA-E2-A10C	NUFIP2	SNP	Missense_Mutation	17	27613780	G	A	33	86
BRCA	TCGA-E2-A10C	NUFIP2	SNP	Missense_Mutation	17	27613855	G	T	33	84
BRCA	TCGA-E2-A10C	NUFIP2	SNP	Nonsense_Mutation	17	27614141	G	A	37	61
BRCA	TCGA-E2-A10C	ATAD5	SNP	Missense_Mutation	17	29162675	G	C	33	62
BRCA	TCGA-E2-A10C	CCL13	SNP	Silent	17	32684555	G	A	33	50
BRCA	TCGA-E2-A10C	DDX52	SNP	Silent	17	35981176	C	T	30	55
BRCA	TCGA-E2-A10C	ABI3	SNP	Missense_Mutation	17	47299506	G	C	33	69
BRCA	TCGA-E2-A10C	SCPEP1	SNP	Splice_Site	17	55065576	G	C	33	98
BRCA	TCGA-E2-A10C	SMG8	SNP	Missense_Mutation	17	57290598	G	C	33	84
BRCA	TCGA-E2-A10C	TANC2	SNP	Silent	17	61490920	G	A	37	64
BRCA	TCGA-E2-A10C	ENSG00000215769	SNP	Missense_Mutation	17	62750718	G	C	45	78
BRCA	TCGA-E2-A10C	DNAH2	SNP	Silent	17	7691442	C	T	29	59
BRCA	TCGA-E2-A10C	NARF	SNP	Missense_Mutation	17	80441594	G	A	45	80
BRCA	TCGA-E2-A10C	TBCD	SNP	Missense_Mutation	17	80828156	G	A	40	68
BRCA	TCGA-E2-A10C	SPDYE4	SNP	Missense_Mutation	17	8661642	G	A	40	54
BRCA	TCGA-E2-A10C	MYL12A	SNP	Missense_Mutation	18	3253328	C	T	29	100
BRCA	TCGA-E2-A10C	PIAS2	SNP	Missense_Mutation	18	44409752	C	T	29	100
BRCA	TCGA-E2-A10C	RTTN	SNP	Missense_Mutation	18	67833354	G	T	45	70
BRCA	TCGA-E2-A10C	ARHGAP28	SNP	Missense_Mutation	18	6876136	G	C	45	59
BRCA	TCGA-E2-A10C	SMARCA4	SNP	Missense_Mutation	19	11170495	G	A	41	94
BRCA	TCGA-E2-A10C	RTBDN	SNP	Silent	19	12936703	G	A	40	51
BRCA	TCGA-E2-A10C	CACNA1A	SNP	Missense_Mutation	19	13414674	C	T	31	72
BRCA	TCGA-E2-A10C	C19orf57	SNP	Missense_Mutation	19	13993709	C	T	23	63
BRCA	TCGA-E2-A10C	CYP4F3	SNP	Missense_Mutation	19	15757899	C	T	30	51
BRCA	TCGA-E2-A10C	FCHO1	SNP	Missense_Mutation	19	17888953	G	C	33	82
BRCA	TCGA-E2-A10C	SUGP2	SNP	Missense_Mutation	19	19136939	C	G	32	55
BRCA	TCGA-E2-A10C	MEF2B	SNP	Silent	19	19257861	G	A	47	58
BRCA	TCGA-E2-A10C	GMIP	SNP	Missense_Mutation	19	19750962	C	T	30	75
BRCA	TCGA-E2-A10C	ZNF14	SNP	Silent	19	19843741	C	G	31	41
BRCA	TCGA-E2-A10C	ZNF431	SNP	Missense_Mutation	19	21365597	T	A	53	49
BRCA	TCGA-E2-A10C	ZNF181	SNP	Missense_Mutation	19	35232425	G	C	33	51
BRCA	TCGA-E2-A10C	APBA3	SNP	Silent	19	3751546	C	T	31	49
BRCA	TCGA-E2-A10C	ZNF585B	SNP	Missense_Mutation	19	37677367	C	T	29	52
BRCA	TCGA-E2-A10C	CAPN12	SNP	Missense_Mutation	19	39229285	C	T	29	62
BRCA	TCGA-E2-A10C	SIRT2	SNP	Silent	19	39371529	C	T	29	47
BRCA	TCGA-E2-A10C	SPTBN4	SNP	Missense_Mutation	19	41029470	G	A	42	81
BRCA	TCGA-E2-A10C	PSG3	SNP	Missense_Mutation	19	43233520	T	A	58	57
BRCA	TCGA-E2-A10C	MYPOP	SNP	Missense_Mutation	19	46393934	G	C	38	51
BRCA	TCGA-E2-A10C	HRC	SNP	Silent	19	49655283	G	C	33	54
BRCA	TCGA-E2-A10C	PTOV1	SNP	Silent	19	50360970	C	G	29	45
BRCA	TCGA-E2-A10C	ZNF528	SNP	Missense_Mutation	19	52919501	G	A	45	48
BRCA	TCGA-E2-A10C	ZNF28	SNP	Missense_Mutation	19	53304398	G	C	45	61
BRCA	TCGA-E2-A10C	NLRP2	SNP	Missense_Mutation	19	55493625	G	C	45	50
BRCA	TCGA-E2-A10C	ZNF470	SNP	Missense_Mutation	19	57088676	C	A	29	56
BRCA	TCGA-E2-A10C	ZNF470	SNP	Missense_Mutation	19	57088944	C	G	32	72
BRCA	TCGA-E2-A10C	ZNF776	SNP	Missense_Mutation	19	58265613	G	C	41	70
BRCA	TCGA-E2-A10C	ZNF324	SNP	Missense_Mutation	19	58980584	C	T	30	55
BRCA	TCGA-E2-A10C	HNRNPM	SNP	Missense_Mutation	19	8533661	G	A	45	98
BRCA	TCGA-E2-A10C	MUC16	SNP	Missense_Mutation	19	9058093	T	C	64	49
BRCA	TCGA-E2-A10C	HS6ST1	SNP	Missense_Mutation	2	129026048	G	C	45	75
BRCA	TCGA-E2-A10C	ZRANB3	SNP	Missense_Mutation	2	135957946	C	A	30	72
BRCA	TCGA-E2-A10C	CYTIP	SNP	Missense_Mutation	2	158272514	G	A	41	79
BRCA	TCGA-E2-A10C	RBMS1	SNP	Missense_Mutation	2	161135089	C	G	29	100
BRCA	TCGA-E2-A10C	PXDN	SNP	Silent	2	1653128	G	A	45	59
BRCA	TCGA-E2-A10C	SCN3A	SNP	Nonsense_Mutation	2	165946941	G	A	45	100
BRCA	TCGA-E2-A10C	XIRP2	SNP	Silent	2	168102468	C	G	29	48
BRCA	TCGA-E2-A10C	XIRP2	SNP	Missense_Mutation	2	168105425	C	T	29	57
BRCA	TCGA-E2-A10C	TTN	SNP	Missense_Mutation	2	179452019	C	T	29	100
BRCA	TCGA-E2-A10C	DNAH7	SNP	Missense_Mutation	2	196699060	C	G	29	100
BRCA	TCGA-E2-A10C	DNAH7	SNP	Missense_Mutation	2	196825113	G	C	33	71
BRCA	TCGA-E2-A10C	ZNF142	DEL	Frame_Shift_Del	2	219509726	GCTTGTGGCT	-	34	78
BRCA	TCGA-E2-A10C	SLC4A3	SNP	Silent	2	220501551	C	T	29	74
BRCA	TCGA-E2-A10C	SH3YL1	SNP	Missense_Mutation	2	230038	C	G	32	75
BRCA	TCGA-E2-A10C	PSMD1	SNP	Missense_Mutation	2	231940241	G	C	33	98
BRCA	TCGA-E2-A10C	LOC391358	SNP	Missense_Mutation	2	26251148	C	T	30	63
BRCA	TCGA-E2-A10C	CIB4	SNP	Silent	2	26805698	G	A	45	64
BRCA	TCGA-E2-A10C	CAD	SNP	Silent	2	27460410	G	A	33	66
BRCA	TCGA-E2-A10C	CAPN13	SNP	Nonsense_Mutation	2	30974021	G	C	45	51
BRCA	TCGA-E2-A10C	TRAPPC12	SNP	Missense_Mutation	2	3483128	G	A	37	83
BRCA	TCGA-E2-A10C	DHX57	SNP	Missense_Mutation	2	39050344	G	C	41	100
BRCA	TCGA-E2-A10C	ZFP36L2	SNP	Missense_Mutation	2	43453450	G	C	37	91
BRCA	TCGA-E2-A10C	PLEKHH2	SNP	Missense_Mutation	2	43934621	C	G	23	70
BRCA	TCGA-E2-A10C	LRPPRC	SNP	Missense_Mutation	2	44121732	C	G	29	79
BRCA	TCGA-E2-A10C	LHCGR	SNP	Missense_Mutation	2	48915942	C	G	29	91
BRCA	TCGA-E2-A10C	EML6	SNP	Missense_Mutation	2	55126862	C	A	31	77
BRCA	TCGA-E2-A10C	XPO1	SNP	Missense_Mutation	2	61715794	C	T	32	100
BRCA	TCGA-E2-A10C	ACTG2	SNP	Missense_Mutation	2	74141897	C	T	30	96
BRCA	TCGA-E2-A10C	DCTN1	SNP	Nonsense_Mutation	2	74594520	G	A	48	76
BRCA	TCGA-E2-A10C	CTNNA2	SNP	Missense_Mutation	2	80097054	G	T	33	100
BRCA	TCGA-E2-A10C	CIAO1	SNP	Silent	2	96936858	G	A	45	58
BRCA	TCGA-E2-A10C	SIRPB1	SNP	Missense_Mutation	20	1559202	C	G	30	51
BRCA	TCGA-E2-A10C	C20orf72	SNP	Missense_Mutation	20	17956500	G	A	45	57
BRCA	TCGA-E2-A10C	CST1	SNP	Missense_Mutation	20	23728509	C	T	31	43
BRCA	TCGA-E2-A10C	KIF3B	SNP	Silent	20	30898618	C	T	29	57
BRCA	TCGA-E2-A10C	PXMP4	SNP	Missense_Mutation	20	32295624	G	A	41	51
BRCA	TCGA-E2-A10C	MYH7B	SNP	Missense_Mutation	20	33568478	C	T	29	70
BRCA	TCGA-E2-A10C	ADAM33	SNP	Nonsense_Mutation	20	3655266	G	C	45	50
BRCA	TCGA-E2-A10C	SIGLEC1	SNP	Silent	20	3677446	G	A	35	60
BRCA	TCGA-E2-A10C	SLC32A1	SNP	Nonsense_Mutation	20	37356662	C	T	29	94
BRCA	TCGA-E2-A10C	CHD6	SNP	Nonsense_Mutation	20	40045305	G	A	37	62
BRCA	TCGA-E2-A10C	NCOA5	SNP	Missense_Mutation	20	44708029	C	T	31	83
BRCA	TCGA-E2-A10C	SULF2	SNP	Silent	20	46365493	C	T	32	62
BRCA	TCGA-E2-A10C	TSHZ2	SNP	Silent	20	51589838	G	A	37	46
BRCA	TCGA-E2-A10C	FAM210B	SNP	Missense_Mutation	20	54941255	G	C	33	98
BRCA	TCGA-E2-A10C	EDN3	SNP	Missense_Mutation	20	57876668	G	A	37	36
BRCA	TCGA-E2-A10C	BMP2	SNP	Nonsense_Mutation	20	6759581	C	T	29	100
BRCA	TCGA-E2-A10C	TPTE	SNP	Missense_Mutation	21	10941954	G	A	45	75
BRCA	TCGA-E2-A10C	CLDN8	SNP	Silent	21	31587809	G	A	45	59
BRCA	TCGA-E2-A10C	PRDM15	SNP	Silent	21	43222950	G	A	38	51
BRCA	TCGA-E2-A10C	PRMT2	SNP	Missense_Mutation	21	48084230	C	T	32	62
BRCA	TCGA-E2-A10C	MTMR3	SNP	Missense_Mutation	22	30415818	G	A	33	72
BRCA	TCGA-E2-A10C	PISD	SNP	Silent	22	32019736	G	C	33	78
BRCA	TCGA-E2-A10C	ZC3H7B	SNP	Silent	22	41752441	G	A	33	62
BRCA	TCGA-E2-A10C	ZBED4	SNP	Missense_Mutation	22	50279480	G	A	45	97
BRCA	TCGA-E2-A10C	NXF3	SNP	Missense_Mutation	23	102338576	C	G	29	52
BRCA	TCGA-E2-A10C	LOC100287881	SNP	Missense_Mutation	23	102979967	G	A	33	58
BRCA	TCGA-E2-A10C	ESX1	SNP	Missense_Mutation	23	103499124	C	T	32	39
BRCA	TCGA-E2-A10C	CLDN2	SNP	Silent	23	106171608	C	G	32	56
BRCA	TCGA-E2-A10C	CLDN2	SNP	Silent	23	106171827	C	G	32	51
BRCA	TCGA-E2-A10C	ALG13	SNP	Missense_Mutation	23	110970088	G	A	37	72
BRCA	TCGA-E2-A10C	STAG2	SNP	Missense_Mutation	23	123182867	C	G	29	98
BRCA	TCGA-E2-A10C	ZNF75D	SNP	Silent	23	134427833	C	T	29	49
BRCA	TCGA-E2-A10C	DDX26B	SNP	Silent	23	134715540	C	A	29	56
BRCA	TCGA-E2-A10C	MAP7D3	SNP	Missense_Mutation	23	135309524	T	A	60	49
BRCA	TCGA-E2-A10C	HTATSF1	SNP	Missense_Mutation	23	135593186	G	A	45	80
BRCA	TCGA-E2-A10C	GPR101	SNP	Missense_Mutation	23	136112924	C	T	31	44
BRCA	TCGA-E2-A10C	ABCD1	SNP	Nonsense_Mutation	23	153001904	C	T	29	63
BRCA	TCGA-E2-A10C	RAI2	SNP	Missense_Mutation	23	17818567	G	A	40	68
BRCA	TCGA-E2-A10C	MXRA5	SNP	Silent	23	3242463	C	A	29	45
BRCA	TCGA-E2-A10C	MXRA5	SNP	Silent	23	3248697	G	A	45	44
BRCA	TCGA-E2-A10C	CXorf30	SNP	Missense_Mutation	23	36379490	C	T	32	62
BRCA	TCGA-E2-A10C	GRIPAP1	SNP	Missense_Mutation	23	48841752	C	T	29	89
BRCA	TCGA-E2-A10C	IQSEC2	SNP	Missense_Mutation	23	53267381	C	T	31	93
BRCA	TCGA-E2-A10C	FAM123B	SNP	Missense_Mutation	23	63410170	C	T	29	47
BRCA	TCGA-E2-A10C	GDPD2	SNP	Nonsense_Mutation	23	69650936	C	T	29	47
BRCA	TCGA-E2-A10C	UPRT	SNP	Silent	23	74517354	G	A	33	54
BRCA	TCGA-E2-A10C	BRWD3	SNP	Missense_Mutation	23	79932203	C	T	29	86
BRCA	TCGA-E2-A10C	FANCD2	SNP	Nonsense_Mutation	3	10107574	G	T	41	97
BRCA	TCGA-E2-A10C	DZIP3	SNP	Silent	3	108407718	C	T	32	59
BRCA	TCGA-E2-A10C	LSAMP	SNP	Silent	3	115529227	G	A	45	62
BRCA	TCGA-E2-A10C	CHST2	SNP	Missense_Mutation	3	142840898	G	A	45	72
BRCA	TCGA-E2-A10C	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-E2-A10C	SOX2	SNP	Missense_Mutation	3	181430398	G	A	41	98
BRCA	TCGA-E2-A10C	KAT2B	SNP	Silent	3	20167519	G	T	45	57
BRCA	TCGA-E2-A10C	ZCWPW2	SNP	Missense_Mutation	3	28562576	G	A	41	49
BRCA	TCGA-E2-A10C	SCN10A	SNP	Missense_Mutation	3	38755529	C	T	29	68
BRCA	TCGA-E2-A10C	FAM198A	SNP	Missense_Mutation	3	43095055	G	C	45	77
BRCA	TCGA-E2-A10C	TDGF1	SNP	Missense_Mutation	3	46620626	G	A	41	55
BRCA	TCGA-E2-A10C	PTH1R	SNP	Missense_Mutation	3	46937242	G	A	33	57
BRCA	TCGA-E2-A10C	KLHL18	SNP	Silent	3	47385248	G	A	41	62
BRCA	TCGA-E2-A10C	MST1	SNP	Nonsense_Mutation	3	49724598	G	C	45	62
BRCA	TCGA-E2-A10C	MST1R	SNP	Missense_Mutation	3	49933743	C	T	31	48
BRCA	TCGA-E2-A10C	CADPS	SNP	Missense_Mutation	3	62543150	C	G	32	68
BRCA	TCGA-E2-A10C	ALPK1	SNP	Missense_Mutation	4	113351985	G	C	33	98
BRCA	TCGA-E2-A10C	TRPC3	SNP	Missense_Mutation	4	122825623	C	T	29	100
BRCA	TCGA-E2-A10C	DDX60	SNP	Missense_Mutation	4	169183193	C	G	24	56
BRCA	TCGA-E2-A10C	WHSC1	SNP	Missense_Mutation	4	1976719	G	A	45	84
BRCA	TCGA-E2-A10C	FAM193A	DEL	Frame_Shift_Del	4	2659551	CGCATGTTAA	-	27	79
BRCA	TCGA-E2-A10C	NOP14	SNP	Missense_Mutation	4	2951877	C	T	29	65
BRCA	TCGA-E2-A10C	TLR1	SNP	Missense_Mutation	4	38798541	G	T	45	76
BRCA	TCGA-E2-A10C	TECRL	SNP	Silent	4	65175565	T	C	59	53
BRCA	TCGA-E2-A10C	EPGN	SNP	Silent	4	75174841	G	A	45	53
BRCA	TCGA-E2-A10C	ANXA3	SNP	Missense_Mutation	4	79522719	G	C	45	64
BRCA	TCGA-E2-A10C	SH3TC1	SNP	Missense_Mutation	4	8211477	G	A	37	63
BRCA	TCGA-E2-A10C	CTNND2	SNP	Missense_Mutation	5	11018106	G	C	33	74
BRCA	TCGA-E2-A10C	TERT	SNP	Silent	5	1260685	G	C	45	48
BRCA	TCGA-E2-A10C	FNIP1	SNP	Missense_Mutation	5	130857085	G	C	45	99
BRCA	TCGA-E2-A10C	SLC23A1	SNP	Missense_Mutation	5	138717666	C	T	31	98
BRCA	TCGA-E2-A10C	PCDHGB1	SNP	Missense_Mutation	5	140730032	G	A	33	69
BRCA	TCGA-E2-A10C	PCDHGB6	SNP	Missense_Mutation	5	140790173	G	C	45	66
BRCA	TCGA-E2-A10C	SLC36A2	SNP	Missense_Mutation	5	150696593	C	T	19	57
BRCA	TCGA-E2-A10C	UBLCP1	SNP	Missense_Mutation	5	158697440	G	A	45	76
BRCA	TCGA-E2-A10C	DROSHA	SNP	Missense_Mutation	5	31409170	G	C	33	64
BRCA	TCGA-E2-A10C	PDZD2	SNP	Missense_Mutation	5	32000267	G	A	33	93
BRCA	TCGA-E2-A10C	C5orf42	SNP	Missense_Mutation	5	37180152	C	T	32	68
BRCA	TCGA-E2-A10C	LIFR	SNP	Nonsense_Mutation	5	38504178	G	C	45	83
BRCA	TCGA-E2-A10C	DAB2	SNP	Missense_Mutation	5	39375157	C	G	32	63
BRCA	TCGA-E2-A10C	IQGAP2	SNP	Silent	5	75906999	G	A	33	53
BRCA	TCGA-E2-A10C	PDE8B	SNP	Silent	5	76700558	C	T	29	52
BRCA	TCGA-E2-A10C	DSE	SNP	Missense_Mutation	6	116757151	C	T	29	76
BRCA	TCGA-E2-A10C	RFX6	SNP	Missense_Mutation	6	117232129	C	T	29	85
BRCA	TCGA-E2-A10C	TAAR2	SNP	Silent	6	132938838	C	A	23	37
BRCA	TCGA-E2-A10C	FBXO30	SNP	Missense_Mutation	6	146126650	C	T	32	69
BRCA	TCGA-E2-A10C	STXBP5	SNP	Missense_Mutation	6	147660341	G	A	45	91
BRCA	TCGA-E2-A10C	MRPL18	SNP	Missense_Mutation	6	160218324	G	A	37	74
BRCA	TCGA-E2-A10C	PNLDC1	SNP	Missense_Mutation	6	160240082	G	C	33	56
BRCA	TCGA-E2-A10C	DACT2	SNP	Missense_Mutation	6	168711061	C	G	29	84
BRCA	TCGA-E2-A10C	LRRC16A	SNP	Missense_Mutation	6	25510753	C	T	32	84
BRCA	TCGA-E2-A10C	HIST1H3B	SNP	Missense_Mutation	6	26032049	C	G	32	85
BRCA	TCGA-E2-A10C	HIST1H2AB	SNP	Missense_Mutation	6	26033433	C	G	29	95
BRCA	TCGA-E2-A10C	HIST1H1B	SNP	Silent	6	27834864	C	A	31	33
BRCA	TCGA-E2-A10C	NOTCH4	SNP	Silent	6	32190850	C	G	30	51
BRCA	TCGA-E2-A10C	HLA-DMB	SNP	Splice_site	6	32904950	C	G	30	73
BRCA	TCGA-E2-A10C	SLC39A7	SNP	Silent	6	33169325	C	G	32	54
BRCA	TCGA-E2-A10C	BAI3	SNP	Missense_Mutation	6	69349121	G	A	33	72
BRCA	TCGA-E2-A10C	IBTK	SNP	Missense_Mutation	6	82927697	C	G	32	57
BRCA	TCGA-E2-A10C	NT5E	SNP	Missense_Mutation	6	86197154	C	G	29	49
BRCA	TCGA-E2-A10C	THSD7A	SNP	Nonsense_Mutation	7	11676319	G	A	45	100
BRCA	TCGA-E2-A10C	TAS2R16	SNP	Silent	7	122635653	G	A	45	51
BRCA	TCGA-E2-A10C	PLXNA4	SNP	Silent	7	132193072	C	G	29	53
BRCA	TCGA-E2-A10C	AKR1B15	SNP	Missense_Mutation	7	134260625	C	T	30	88
BRCA	TCGA-E2-A10C	NUP205	SNP	Nonsense_Mutation	7	135261125	C	T	17	100
BRCA	TCGA-E2-A10C	MGAM	SNP	Silent	7	141736724	C	G	32	50
BRCA	TCGA-E2-A10C	OR2F1	SNP	Nonsense_Mutation	7	143657556	C	T	29	73
BRCA	TCGA-E2-A10C	OR2F1	SNP	Silent	7	143657696	C	T	32	54
BRCA	TCGA-E2-A10C	OR2F1	SNP	Missense_Mutation	7	143657793	C	G	29	97
BRCA	TCGA-E2-A10C	OR2A2	SNP	Silent	7	143807338	C	T	31	35
BRCA	TCGA-E2-A10C	TPK1	SNP	Missense_Mutation	7	144320315	C	T	29	79
BRCA	TCGA-E2-A10C	GIMAP2	SNP	Missense_Mutation	7	150389612	G	C	33	82
BRCA	TCGA-E2-A10C	AGAP3	SNP	Missense_Mutation	7	150813883	C	T	31	93
BRCA	TCGA-E2-A10C	IL6	SNP	Silent	7	22769291	C	T	24	52
BRCA	TCGA-E2-A10C	STK31	SNP	Missense_Mutation	7	23766900	G	A	33	88
BRCA	TCGA-E2-A10C	DFNA5	SNP	Missense_Mutation	7	24749906	C	G	32	60
BRCA	TCGA-E2-A10C	CBX3	SNP	Missense_Mutation	7	26251371	G	A	45	87
BRCA	TCGA-E2-A10C	HOXA13	SNP	Missense_Mutation	7	27237824	G	C	36	75
BRCA	TCGA-E2-A10C	CARD11	SNP	Silent	7	2979488	C	T	29	44
BRCA	TCGA-E2-A10C	NACAD	SNP	Missense_Mutation	7	45124506	C	T	30	53
BRCA	TCGA-E2-A10C	FBXL18	SNP	Missense_Mutation	7	5541259	G	A	37	80
BRCA	TCGA-E2-A10C	TYW1B	SNP	Nonsense_Mutation	7	72040521	G	A	45	88
BRCA	TCGA-E2-A10C	POM121	SNP	Missense_Mutation	7	72414040	G	A	45	59
BRCA	TCGA-E2-A10C	SRCRB4D	SNP	Silent	7	76023178	G	C	45	45
BRCA	TCGA-E2-A10C	SAMD9	SNP	Missense_Mutation	7	92732458	G	A	45	79
BRCA	TCGA-E2-A10C	TRRAP	SNP	Missense_Mutation	7	98529178	G	C	33	100
BRCA	TCGA-E2-A10C	ARPC1B	SNP	Missense_Mutation	7	98983370	C	G	29	60
BRCA	TCGA-E2-A10C	PKHD1L1	SNP	Splice_Site	8	110400725	G	A	33	84
BRCA	TCGA-E2-A10C	MTBP	SNP	Missense_Mutation	8	121463465	G	A	45	68
BRCA	TCGA-E2-A10C	CYP11B1	SNP	Missense_Mutation	8	143957264	C	T	29	89
BRCA	TCGA-E2-A10C	KIAA0146	SNP	Nonsense_Mutation	8	48647973	C	T	31	38
BRCA	TCGA-E2-A10C	TOX	SNP	Missense_Mutation	8	59750744	C	A	29	100
BRCA	TCGA-E2-A10C	PRDM14	SNP	Silent	8	70981480	G	A	33	60
BRCA	TCGA-E2-A10C	CRISPLD1	SNP	Silent	8	75898249	C	T	29	72
BRCA	TCGA-E2-A10C	RALYL	SNP	Missense_Mutation	8	85799846	G	T	33	63
BRCA	TCGA-E2-A10C	CNBD1	SNP	Missense_Mutation	8	88249292	C	G	29	33
BRCA	TCGA-E2-A10C	DCAF4L2	SNP	Missense_Mutation	8	88886087	C	T	32	44
BRCA	TCGA-E2-A10C	MMP16	SNP	Missense_Mutation	8	89086949	C	G	32	99
BRCA	TCGA-E2-A10C	C9orf174	SNP	Missense_Mutation	9	100070026	C	T	31	34
BRCA	TCGA-E2-A10C	DFNB31	SNP	Missense_Mutation	9	117188600	T	A	51	65
BRCA	TCGA-E2-A10C	RC3H2	SNP	Missense_Mutation	9	125622277	G	C	41	82
BRCA	TCGA-E2-A10C	GTF3C5	SNP	Missense_Mutation	9	135933239	G	C	33	64
BRCA	TCGA-E2-A10C	NOTCH1	SNP	Missense_Mutation	9	139393424	G	A	42	97
BRCA	TCGA-E2-A10C	ZBTB5	SNP	Missense_Mutation	9	37441978	G	A	45	75
BRCA	TCGA-E2-A10C	RASEF	SNP	Missense_Mutation	9	85624562	G	A	36	79
BRCA	TCGA-E2-A10C	FAM120A	SNP	Nonsense_Mutation	9	96326563	C	G	29	89
BRCA	TCGA-E2-A10E	CSF1	SNP	Missense_Mutation	1	110466401	G	C	33	64
BRCA	TCGA-E2-A10E	DDR2	SNP	Missense_Mutation	1	162746132	G	A	38	97
BRCA	TCGA-E2-A10E	RALGPS2	SNP	Silent	1	178780488	A	G	1	50
BRCA	TCGA-E2-A10E	NR5A2	SNP	Missense_Mutation	1	200012952	C	T	28	72
BRCA	TCGA-E2-A10E	MSRB2	SNP	Silent	10	23393167	G	A	39	35
BRCA	TCGA-E2-A10E	NRXN2	SNP	Missense_Mutation	11	64435947	C	T	19	80
BRCA	TCGA-E2-A10E	FREM2	SNP	Missense_Mutation	13	39261792	G	A	38	66
BRCA	TCGA-E2-A10E	MEX3C	SNP	Silent	18	48702727	G	A	36	86
BRCA	TCGA-E2-A10E	ZCCHC2	SNP	Missense_Mutation	18	60191460	T	A	55	59
BRCA	TCGA-E2-A10E	GRIN2D	SNP	Missense_Mutation	19	48908478	G	A	39	69
BRCA	TCGA-E2-A10E	MCOLN1	SNP	Missense_Mutation	19	7591479	A	T	8	58
BRCA	TCGA-E2-A10E	ITGA6	DEL	In_Frame_Del	2	173356028	GCTCGAGGTTAT	-	38	71
BRCA	TCGA-E2-A10E	TTN	SNP	Missense_Mutation	2	179650417	C	T	27	70
BRCA	TCGA-E2-A10E	USP40	SNP	Splice_Site	2	234428319	T	C	53	75
BRCA	TCGA-E2-A10E	OTOF	SNP	Missense_Mutation	2	26688892	G	A	42	67
BRCA	TCGA-E2-A10E	PLS3	SNP	Missense_Mutation	23	114883857	G	A	47	97
BRCA	TCGA-E2-A10E	PIGA	SNP	Missense_Mutation	23	15339870	C	T	28	62
BRCA	TCGA-E2-A10E	NHSL2	SNP	Missense_Mutation	23	71359229	C	T	29	56
BRCA	TCGA-E2-A10E	PCDHGA1	SNP	Missense_Mutation	5	140711179	G	A	37	95
BRCA	TCGA-E2-A10E	BTNL8	SNP	Missense_Mutation	5	180376957	C	A	32	52
BRCA	TCGA-E2-A10E	MAST4	SNP	Missense_Mutation	5	66459337	G	A	40	100
BRCA	TCGA-E2-A10E	C5orf49	SNP	Missense_Mutation	5	7832054	C	G	26	58
BRCA	TCGA-E2-A10E	LOC100289162	SNP	Silent	6	160555269	C	T	32	49
BRCA	TCGA-E2-A10E	PAXIP1	SNP	Missense_Mutation	7	154752763	T	A	56	50
BRCA	TCGA-E2-A10E	COLEC10	SNP	Splice_site	8	120103458	G	C	35	57
BRCA	TCGA-E2-A10E	TG	SNP	Nonsense_Mutation	8	133948004	C	T	19	57
BRCA	TCGA-E2-A10E	C9orf114	SNP	Silent	9	131587072	G	A	39	31
BRCA	TCGA-E2-A10F	CD1B	SNP	Missense_Mutation	1	158299878	G	C	33	47
BRCA	TCGA-E2-A10F	RAP1GAP	SNP	Silent	1	21936700	G	A	37	50
BRCA	TCGA-E2-A10F	RLF	SNP	Missense_Mutation	1	40705088	C	T	19	75
BRCA	TCGA-E2-A10F	KLHL21	SNP	Missense_Mutation	1	6659504	C	T	31	97
BRCA	TCGA-E2-A10F	REEP3	SNP	Silent	10	65380602	G	T	45	69
BRCA	TCGA-E2-A10F	GLB1L3	SNP	Silent	11	134179638	G	A	39	25
BRCA	TCGA-E2-A10F	ODZ4	SNP	Missense_Mutation	11	78775887	C	T	19	85
BRCA	TCGA-E2-A10F	CAND1	SNP	Silent	12	67696173	G	A	47	86
BRCA	TCGA-E2-A10F	CDH1	INS	Frame_Shift_Ins	16	68845685	-	T	28	37
BRCA	TCGA-E2-A10F	SUPT6H	SNP	Missense_Mutation	17	27014157	C	T	23	76
BRCA	TCGA-E2-A10F	ATP8B3	SNP	Missense_Mutation	19	1802626	G	A	38	59
BRCA	TCGA-E2-A10F	ZNF99	SNP	Missense_Mutation	19	22940742	C	A	28	50
BRCA	TCGA-E2-A10F	SF3B1	SNP	Missense_Mutation	2	198266493	A	T	8	61
BRCA	TCGA-E2-A10F	PLCL1	SNP	Missense_Mutation	2	198949560	G	A	37	100
BRCA	TCGA-E2-A10F	EFR3B	SNP	Missense_Mutation	2	25358396	C	T	23	80
BRCA	TCGA-E2-A10F	PHACTR3	SNP	Silent	20	58342410	G	A	38	37
BRCA	TCGA-E2-A10F	NRK	SNP	Nonsense_Mutation	23	105152945	C	T	19	56
BRCA	TCGA-E2-A10F	FLNA	SNP	Silent	23	153599398	G	A	38	83
BRCA	TCGA-E2-A10F	STAG1	SNP	Nonsense_Mutation	3	136088052	G	A	45	85
BRCA	TCGA-E2-A10F	PIK3CA	SNP	Missense_Mutation	3	178938934	G	A	45	98
BRCA	TCGA-E2-A10F	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A10F	CSRNP1	SNP	Missense_Mutation	3	39185716	C	T	27	100
BRCA	TCGA-E2-A10F	CELSR3	SNP	Silent	3	48694417	T	C	57	54
BRCA	TCGA-E2-A10F	PCDHB7	SNP	Missense_Mutation	5	140553401	G	A	47	61
BRCA	TCGA-E2-A10F	MARVELD2	SNP	Missense_Mutation	5	68728474	A	G	13	88
BRCA	TCGA-E2-A10F	ETV7	SNP	Missense_Mutation	6	36334453	A	G	9	64
BRCA	TCGA-E2-A10F	CCIN	SNP	Missense_Mutation	9	36169514	C	A	29	66
BRCA	TCGA-E2-A14N	CTSS	SNP	Missense_Mutation	1	150722597	C	A	20	54
BRCA	TCGA-E2-A14N	PIP5K1A	SNP	Silent	1	151209081	C	T	30	69
BRCA	TCGA-E2-A14N	SPRR3	SNP	Silent	1	152975898	T	G	55	54
BRCA	TCGA-E2-A14N	CSMD2	SNP	Missense_Mutation	1	34554791	T	C	55	77
BRCA	TCGA-E2-A14N	RIMKLA	SNP	Missense_Mutation	1	42875811	T	C	51	85
BRCA	TCGA-E2-A14N	SLC5A9	SNP	Missense_Mutation	1	48699331	G	A	35	51
BRCA	TCGA-E2-A14N	PLEKHN1	SNP	Missense_Mutation	1	906108	G	T	43	54
BRCA	TCGA-E2-A14N	CCDC3	SNP	Silent	10	13043199	G	A	45	60
BRCA	TCGA-E2-A14N	THNSL1	SNP	Nonsense_Mutation	10	25313398	C	T	29	98
BRCA	TCGA-E2-A14N	ABI1	SNP	Missense_Mutation	10	27052815	C	A	17	54
BRCA	TCGA-E2-A14N	PTCHD3	SNP	Splice_site	10	27700858	C	A	18	58
BRCA	TCGA-E2-A14N	CUL5	SNP	Silent	11	107965573	C	T	27	53
BRCA	TCGA-E2-A14N	MRGPRX3	SNP	Missense_Mutation	11	18159472	G	T	41	58
BRCA	TCGA-E2-A14N	GANAB	SNP	Missense_Mutation	11	62400200	C	G	27	95
BRCA	TCGA-E2-A14N	RNF10	SNP	Missense_Mutation	12	120995476	C	T	29	67
BRCA	TCGA-E2-A14N	ATP11A	SNP	Splice_Site	13	113488902	G	C	33	99
BRCA	TCGA-E2-A14N	F7	SNP	Silent	13	113771885	C	T	20	49
BRCA	TCGA-E2-A14N	FAM124A	SNP	Silent	13	51854669	G	A	37	24
BRCA	TCGA-E2-A14N	RTL1	SNP	Missense_Mutation	14	101350779	C	T	30	50
BRCA	TCGA-E2-A14N	PROX2	SNP	Missense_Mutation	14	75329577	T	A	58	56
BRCA	TCGA-E2-A14N	MYO9A	SNP	Missense_Mutation	15	72338876	C	T	27	98
BRCA	TCGA-E2-A14N	IL27	SNP	Missense_Mutation	16	28511052	C	G	19	51
BRCA	TCGA-E2-A14N	LOC732391	SNP	Missense_Mutation	17	15469101	G	A	40	48
BRCA	TCGA-E2-A14N	BZRAP1	SNP	Missense_Mutation	17	56384995	A	C	3	89
BRCA	TCGA-E2-A14N	ACOX1	SNP	Missense_Mutation	17	73956312	C	G	32	71
BRCA	TCGA-E2-A14N	TP53	SNP	Nonsense_Mutation	17	7578263	G	A	39	67
BRCA	TCGA-E2-A14N	ZNF625	SNP	Missense_Mutation	19	12256170	G	C	36	53
BRCA	TCGA-E2-A14N	FAM108A1	SNP	Missense_Mutation	19	1877565	C	A	22	81
BRCA	TCGA-E2-A14N	PRODH2	SNP	Missense_Mutation	19	36303679	G	C	41	71
BRCA	TCGA-E2-A14N	NUMBL	SNP	Missense_Mutation	19	41173774	C	A	20	61
BRCA	TCGA-E2-A14N	RANBP3	SNP	Silent	19	5917932	C	T	25	57
BRCA	TCGA-E2-A14N	LPPR3	SNP	Silent	19	815750	G	A	33	51
BRCA	TCGA-E2-A14N	FAM171B	SNP	Missense_Mutation	2	187626606	A	T	11	50
BRCA	TCGA-E2-A14N	XPO1	SNP	Silent	2	61710129	A	G	16	77
BRCA	TCGA-E2-A14N	CEP68	SNP	Missense_Mutation	2	65298808	C	T	24	52
BRCA	TCGA-E2-A14N	TRABD2A	SNP	Missense_Mutation	2	85097456	A	C	3	56
BRCA	TCGA-E2-A14N	FER1L5	SNP	Missense_Mutation	2	97357535	C	T	26	51
BRCA	TCGA-E2-A14N	CDK5RAP1	SNP	Missense_Mutation	20	31961928	G	A	38	58
BRCA	TCGA-E2-A14N	ATRN	SNP	Splice_site	20	3527932	T	A	64	55
BRCA	TCGA-E2-A14N	PCMTD2	SNP	Missense_Mutation	20	62899355	T	C	58	76
BRCA	TCGA-E2-A14N	MYO18B	SNP	Silent	22	26423470	A	T	8	38
BRCA	TCGA-E2-A14N	MID2	SNP	Missense_Mutation	23	107170052	C	G	27	79
BRCA	TCGA-E2-A14N	ZRSR2	DEL	In_Frame_Del	23	15841195	AGGGACCGCAGC	-	15	62
BRCA	TCGA-E2-A14N	GYG2	SNP	Missense_Mutation	23	2774660	C	G	29	64
BRCA	TCGA-E2-A14N	ATG7	SNP	Missense_Mutation	3	11383698	A	G	1	65
BRCA	TCGA-E2-A14N	TTC29	SNP	Missense_Mutation	4	147724636	C	G	24	61
BRCA	TCGA-E2-A14N	UGT2A1	SNP	Missense_Mutation	4	70455314	G	T	42	72
BRCA	TCGA-E2-A14N	HPSE	SNP	Missense_Mutation	4	84234382	A	T	5	54
BRCA	TCGA-E2-A14N	KDM3B	SNP	Missense_Mutation	5	137771360	G	A	42	100
BRCA	TCGA-E2-A14N	CCDC69	SNP	Splice_Site	5	150566946	C	A	18	73
BRCA	TCGA-E2-A14N	SYCP2L	SNP	Nonsense_Mutation	6	10935310	C	A	29	46
BRCA	TCGA-E2-A14N	RSPH3	SNP	Missense_Mutation	6	159401878	G	C	35	70
BRCA	TCGA-E2-A14N	SSR1	SNP	Missense_Mutation	6	7301667	A	G	3	92
BRCA	TCGA-E2-A14N	MGAM	SNP	Missense_Mutation	7	141705436	A	G	5	51
BRCA	TCGA-E2-A14N	HTR5A	SNP	Missense_Mutation	7	154862779	G	T	47	97
BRCA	TCGA-E2-A14N	AKAP9	SNP	Missense_Mutation	7	91632139	C	G	17	69
BRCA	TCGA-E2-A14N	SAMD9	SNP	Silent	7	92733023	G	T	41	50
BRCA	TCGA-E2-A14N	SH3GL2	SNP	Missense_Mutation	9	17795652	G	A	45	100
BRCA	TCGA-E2-A14N	MLLT3	SNP	Missense_Mutation	9	20620668	G	A	41	100
BRCA	TCGA-E2-A14N	PTCH1	SNP	Missense_Mutation	9	98221930	C	G	32	96
BRCA	TCGA-E2-A14O	CFHR3	SNP	Silent	1	196757392	C	T	23	55
BRCA	TCGA-E2-A14O	OR2T2	SNP	Missense_Mutation	1	248616513	C	T	23	46
BRCA	TCGA-E2-A14O	C1orf185	SNP	Missense_Mutation	1	51584393	C	T	18	50
BRCA	TCGA-E2-A14O	SEMA4G	SNP	Missense_Mutation	10	102732993	T	G	54	66
BRCA	TCGA-E2-A14O	DHX32	SNP	Missense_Mutation	10	127530353	T	G	58	85
BRCA	TCGA-E2-A14O	MLLT10	SNP	Missense_Mutation	10	21959565	G	A	35	90
BRCA	TCGA-E2-A14O	SYT12	SNP	Missense_Mutation	11	66811295	G	T	47	67
BRCA	TCGA-E2-A14O	PITPNM1	SNP	Missense_Mutation	11	67269453	C	T	29	90
BRCA	TCGA-E2-A14O	SPRYD4	SNP	Missense_Mutation	12	56862936	A	C	9	90
BRCA	TCGA-E2-A14O	EIF5	SNP	Missense_Mutation	14	103802230	C	G	18	73
BRCA	TCGA-E2-A14O	BTBD6	SNP	Silent	14	105716214	C	T	23	19
BRCA	TCGA-E2-A14O	ARHGAP11A	SNP	Missense_Mutation	15	32929250	C	A	28	63
BRCA	TCGA-E2-A14O	TBL3	SNP	Missense_Mutation	16	2027601	G	A	43	99
BRCA	TCGA-E2-A14O	ARMC5	SNP	Missense_Mutation	16	31474228	C	T	23	59
BRCA	TCGA-E2-A14O	GLYR1	DEL	In_Frame_Del	16	4862120	AGC	-	3	89
BRCA	TCGA-E2-A14O	FLII	SNP	Missense_Mutation	17	18149307	C	T	31	96
BRCA	TCGA-E2-A14O	COL1A1	SNP	Missense_Mutation	17	48267939	C	T	23	82
BRCA	TCGA-E2-A14O	TANC2	SNP	Missense_Mutation	17	61498828	A	G	2	63
BRCA	TCGA-E2-A14O	DAZAP1	SNP	Silent	19	1418354	G	T	38	41
BRCA	TCGA-E2-A14O	EMR2	SNP	Missense_Mutation	19	14866468	G	A	39	55
BRCA	TCGA-E2-A14O	RASAL3	SNP	Missense_Mutation	19	15565621	C	T	31	81
BRCA	TCGA-E2-A14O	RFX2	SNP	Missense_Mutation	19	6040046	C	A	22	68
BRCA	TCGA-E2-A14O	TRIP10	SNP	Missense_Mutation	19	6750615	G	T	44	90
BRCA	TCGA-E2-A14O	SGSM1	SNP	Missense_Mutation	22	25315810	G	A	40	100
BRCA	TCGA-E2-A14O	IRAK1	SNP	Silent	23	153284685	C	A	30	59
BRCA	TCGA-E2-A14O	PJA1	SNP	Nonsense_Mutation	23	68382547	G	A	38	47
BRCA	TCGA-E2-A14O	FXYD8	SNP	Missense_Mutation	23	73094954	G	T	42	55
BRCA	TCGA-E2-A14O	PLXND1	SNP	Missense_Mutation	3	129289712	C	T	31	74
BRCA	TCGA-E2-A14O	NKTR	SNP	Missense_Mutation	3	42659115	A	G	1	89
BRCA	TCGA-E2-A14O	PCDH7	SNP	Missense_Mutation	4	30725334	G	T	34	73
BRCA	TCGA-E2-A14O	LATS1	SNP	Nonsense_Mutation	6	150001395	G	A	37	77
BRCA	TCGA-E2-A14O	PLXNA4	SNP	Missense_Mutation	7	131908302	C	T	31	100
BRCA	TCGA-E2-A14O	SDK1	SNP	Missense_Mutation	7	4008969	G	A	40	68
BRCA	TCGA-E2-A14O	ERVW-1	SNP	Missense_Mutation	7	92098206	A	T	12	51
BRCA	TCGA-E2-A14O	STMN4	SNP	Missense_Mutation	8	27098633	G	A	38	56
BRCA	TCGA-E2-A14O	ZNF705G	SNP	Nonsense_Mutation	8	7217792	C	A	30	56
BRCA	TCGA-E2-A14O	ASTN2	SNP	Missense_Mutation	9	119188282	C	T	19	79
BRCA	TCGA-E2-A14P	TMOD4	SNP	Missense_Mutation	1	151146968	G	A	40	99
BRCA	TCGA-E2-A14P	ARHGEF2	SNP	Silent	1	155922540	G	A	41	64
BRCA	TCGA-E2-A14P	IKBKE	SNP	Silent	1	206649567	C	T	27	21
BRCA	TCGA-E2-A14P	HP1BP3	SNP	Silent	1	21076220	A	G	12	48
BRCA	TCGA-E2-A14P	HSPG2	SNP	Missense_Mutation	1	22156504	C	A	22	88
BRCA	TCGA-E2-A14P	BROX	SNP	Missense_Mutation	1	222903003	A	T	4	49
BRCA	TCGA-E2-A14P	KMO	SNP	Missense_Mutation	1	241750005	G	C	45	92
BRCA	TCGA-E2-A14P	UBXN11	SNP	Missense_Mutation	1	26608929	G	A	39	52
BRCA	TCGA-E2-A14P	STIL	SNP	Silent	1	47728698	C	T	32	53
BRCA	TCGA-E2-A14P	SLC5A9	SNP	Missense_Mutation	1	48696327	A	G	14	90
BRCA	TCGA-E2-A14P	HFM1	SNP	Missense_Mutation	1	91859834	G	C	33	55
BRCA	TCGA-E2-A14P	JAKMIP3	SNP	Silent	10	133967268	C	T	30	44
BRCA	TCGA-E2-A14P	OR8J1	SNP	Silent	11	56127893	C	A	22	46
BRCA	TCGA-E2-A14P	MRGPRD	SNP	Silent	11	68748273	G	A	33	73
BRCA	TCGA-E2-A14P	ABCC9	SNP	Silent	12	22025600	G	A	37	35
BRCA	TCGA-E2-A14P	DBX2	SNP	Missense_Mutation	12	45444337	C	T	31	51
BRCA	TCGA-E2-A14P	C12orf44	SNP	Missense_Mutation	12	52470890	G	T	33	59
BRCA	TCGA-E2-A14P	ANO2	SNP	Silent	12	5848498	G	T	46	34
BRCA	TCGA-E2-A14P	LOC643677	SNP	Missense_Mutation	13	103391205	C	T	32	47
BRCA	TCGA-E2-A14P	OR4K2	SNP	Silent	14	20344474	G	T	42	52
BRCA	TCGA-E2-A14P	PRMT5	SNP	Missense_Mutation	14	23397820	C	G	29	94
BRCA	TCGA-E2-A14P	YLPM1	SNP	Missense_Mutation	14	75248571	T	C	50	51
BRCA	TCGA-E2-A14P	WDR76	SNP	Silent	15	44119242	G	T	39	28
BRCA	TCGA-E2-A14P	SMPD3	SNP	Missense_Mutation	16	68404767	G	T	33	66
BRCA	TCGA-E2-A14P	SPAG5	SNP	Missense_Mutation	17	26905084	G	A	37	59
BRCA	TCGA-E2-A14P	SLC35G3	SNP	Silent	17	33520478	G	A	38	72
BRCA	TCGA-E2-A14P	BRIP1	DEL	Splice_site	17	59861632	TGCTATTTT	-	55	73
BRCA	TCGA-E2-A14P	CD300E	SNP	Silent	17	72613390	G	A	37	54
BRCA	TCGA-E2-A14P	TP53	SNP	Missense_Mutation	17	7578461	C	A	19	51
BRCA	TCGA-E2-A14P	PIEZO2	SNP	Missense_Mutation	18	10696087	G	A	35	97
BRCA	TCGA-E2-A14P	KIAA1328	SNP	Missense_Mutation	18	34465536	G	A	41	94
BRCA	TCGA-E2-A14P	PIAS2	SNP	Missense_Mutation	18	44400931	T	C	51	84
BRCA	TCGA-E2-A14P	PTPRM	SNP	Missense_Mutation	18	8387170	G	A	38	76
BRCA	TCGA-E2-A14P	HNRNPL	SNP	Nonsense_Mutation	19	39329199	G	T	40	49
BRCA	TCGA-E2-A14P	BRSK1	SNP	Missense_Mutation	19	55820015	C	T	23	73
BRCA	TCGA-E2-A14P	ERCC3	SNP	Missense_Mutation	2	128046289	C	T	31	100
BRCA	TCGA-E2-A14P	IWS1	SNP	Missense_Mutation	2	128260411	C	T	29	89
BRCA	TCGA-E2-A14P	POTEF	DEL	Frame_Shift_Del	2	130868152	GTCT	-	40	49
BRCA	TCGA-E2-A14P	LRP2	SNP	Missense_Mutation	2	170003332	C	T	31	79
BRCA	TCGA-E2-A14P	TTN	SNP	Missense_Mutation	2	179456809	A	C	7	94
BRCA	TCGA-E2-A14P	TTN	SNP	Silent	2	179476280	A	G	10	55
BRCA	TCGA-E2-A14P	KCNS3	SNP	Missense_Mutation	2	18112646	G	A	38	63
BRCA	TCGA-E2-A14P	ZDBF2	SNP	Silent	2	207175720	C	T	29	63
BRCA	TCGA-E2-A14P	FAM124B	SNP	Missense_Mutation	2	225266233	C	T	19	56
BRCA	TCGA-E2-A14P	NMUR1	SNP	Missense_Mutation	2	232392911	G	A	33	57
BRCA	TCGA-E2-A14P	OXER1	SNP	Missense_Mutation	2	42990664	C	T	26	50
BRCA	TCGA-E2-A14P	RNF103	SNP	Silent	2	86831287	G	A	47	81
BRCA	TCGA-E2-A14P	DDRGK1	SNP	Missense_Mutation	20	3184039	C	T	29	75
BRCA	TCGA-E2-A14P	CENPB	SNP	Missense_Mutation	20	3765588	C	T	29	75
BRCA	TCGA-E2-A14P	PABPC1L	SNP	Missense_Mutation	20	43538932	C	T	27	74
BRCA	TCGA-E2-A14P	CDH4	SNP	Missense_Mutation	20	59829897	C	G	32	81
BRCA	TCGA-E2-A14P	ELFN2	SNP	Missense_Mutation	22	37771355	A	G	11	78
BRCA	TCGA-E2-A14P	HNRNPH2	SNP	Missense_Mutation	23	100668219	C	A	25	58
BRCA	TCGA-E2-A14P	FAM47C	SNP	Missense_Mutation	23	37028635	C	T	26	46
BRCA	TCGA-E2-A14P	EEFSEC	SNP	Silent	3	127983621	C	A	29	57
BRCA	TCGA-E2-A14P	IFT122	SNP	Silent	3	129200411	C	G	30	65
BRCA	TCGA-E2-A14P	ABCC5	SNP	Missense_Mutation	3	183669317	G	C	41	59
BRCA	TCGA-E2-A14P	EIF2B5	SNP	Missense_Mutation	3	183855975	G	A	45	86
BRCA	TCGA-E2-A14P	TBC1D9	SNP	Silent	4	141578724	A	G	2	65
BRCA	TCGA-E2-A14P	MFAP3L	SNP	Missense_Mutation	4	170912621	C	T	32	69
BRCA	TCGA-E2-A14P	LOC100288105	SNP	Silent	5	140242934	G	A	37	49
BRCA	TCGA-E2-A14P	PCDHGA2	SNP	Missense_Mutation	5	140720243	A	G	6	74
BRCA	TCGA-E2-A14P	C5orf45	SNP	Missense_Mutation	5	179267940	C	T	19	56
BRCA	TCGA-E2-A14P	IYD	SNP	Silent	6	150715289	C	T	29	58
BRCA	TCGA-E2-A14P	VIP	SNP	Missense_Mutation	6	153077328	A	T	10	91
BRCA	TCGA-E2-A14P	MAS1L	SNP	Silent	6	29454744	G	A	45	58
BRCA	TCGA-E2-A14P	MAS1L	SNP	Silent	6	29455332	G	A	37	35
BRCA	TCGA-E2-A14P	LTA	SNP	Missense_Mutation	6	31541102	G	A	41	75
BRCA	TCGA-E2-A14P	DUSP22	SNP	Silent	6	348862	C	T	27	58
BRCA	TCGA-E2-A14P	ACTL6B	SNP	Silent	7	100244881	G	A	39	40
BRCA	TCGA-E2-A14P	PLXNA4	SNP	Missense_Mutation	7	131982906	G	A	39	52
BRCA	TCGA-E2-A14P	BBS9	SNP	Missense_Mutation	7	33407456	C	T	32	89
BRCA	TCGA-E2-A14P	NPSR1	SNP	Missense_Mutation	7	34724283	G	T	34	54
BRCA	TCGA-E2-A14P	GLI3	SNP	Missense_Mutation	7	42064883	G	A	43	98
BRCA	TCGA-E2-A14P	ZDHHC4	SNP	Missense_Mutation	7	6621256	C	G	30	74
BRCA	TCGA-E2-A14P	MCM7	SNP	Nonsense_Mutation	7	99695338	G	T	45	94
BRCA	TCGA-E2-A14P	UBR5	SNP	Missense_Mutation	8	103284901	C	T	20	87
BRCA	TCGA-E2-A14P	MBOAT4	SNP	Nonsense_Mutation	8	29989859	G	C	45	90
BRCA	TCGA-E2-A14P	RNF170	SNP	Silent	8	42711536	C	T	29	72
BRCA	TCGA-E2-A14P	ADAMTS13	SNP	Missense_Mutation	9	136314932	G	A	40	57
BRCA	TCGA-E2-A14P	EHMT1	SNP	Missense_Mutation	9	140729293	A	G	3	89
BRCA	TCGA-E2-A14P	FAM205A	SNP	Silent	9	34723403	A	G	10	40
BRCA	TCGA-E2-A14P	ZCCHC6	SNP	Splice_Site	9	88920155	C	T	32	96
BRCA	TCGA-E2-A14Q	ATP1A4	SNP	Missense_Mutation	1	160147410	G	C	33	55
BRCA	TCGA-E2-A14Q	CFHR2	SNP	Missense_Mutation	1	196918689	T	C	55	56
BRCA	TCGA-E2-A14Q	RYR2	SNP	Missense_Mutation	1	237881772	A	G	11	92
BRCA	TCGA-E2-A14Q	STK32C	SNP	Silent	10	134036380	C	T	23	20
BRCA	TCGA-E2-A14Q	LOC100287896	SNP	Missense_Mutation	11	74209012	G	A	45	51
BRCA	TCGA-E2-A14Q	CLIP1	SNP	Silent	12	122825972	G	A	39	9
BRCA	TCGA-E2-A14Q	MYF6	SNP	Missense_Mutation	12	81101884	C	T	22	100
BRCA	TCGA-E2-A14Q	PSMC6	SNP	Splice_site	14	53173897	T	C	51	69
BRCA	TCGA-E2-A14Q	POMT2	SNP	Silent	14	77757676	C	T	32	73
BRCA	TCGA-E2-A14Q	EML5	DEL	Frame_Shift_Del	14	89094085	C	-	30	97
BRCA	TCGA-E2-A14Q	CCDC102A	SNP	Missense_Mutation	16	57550287	A	C	6	72
BRCA	TCGA-E2-A14Q	KIAA0664	SNP	Missense_Mutation	17	2598235	G	A	48	84
BRCA	TCGA-E2-A14Q	RGS9	SNP	Missense_Mutation	17	63221255	C	T	23	49
BRCA	TCGA-E2-A14Q	RYR1	SNP	Silent	19	38973696	C	T	23	31
BRCA	TCGA-E2-A14Q	IL28B	SNP	Missense_Mutation	19	39735556	C	T	19	46
BRCA	TCGA-E2-A14Q	IL1RL2	SNP	Missense_Mutation	2	102818091	G	A	41	74
BRCA	TCGA-E2-A14Q	LRP1B	SNP	Missense_Mutation	2	141598583	G	A	40	85
BRCA	TCGA-E2-A14Q	ZHX3	SNP	Missense_Mutation	20	39832443	G	A	39	54
BRCA	TCGA-E2-A14Q	LAMB2	SNP	Missense_Mutation	3	49167413	G	A	37	60
BRCA	TCGA-E2-A14Q	PCDHB14	SNP	Silent	5	140605357	G	C	41	49
BRCA	TCGA-E2-A14Q	PCDHGB1	SNP	Silent	5	140731438	G	A	38	45
BRCA	TCGA-E2-A14Q	PIK3R1	DEL	In_Frame_Del	5	67591130	AAGACGAGAGACCAATACTTG	-	1	90
BRCA	TCGA-E2-A14Q	KIFC1	SNP	Missense_Mutation	6	33371608	G	T	46	46
BRCA	TCGA-E2-A14Q	USP49	SNP	Silent	6	41773690	G	A	45	60
BRCA	TCGA-E2-A14Q	RBAK	SNP	Missense_Mutation	7	5103484	A	G	4	49
BRCA	TCGA-E2-A14Q	USP42	SNP	Missense_Mutation	7	6155014	T	G	56	93
BRCA	TCGA-E2-A14Q	RIMS2	SNP	Missense_Mutation	8	104924348	G	A	40	100
BRCA	TCGA-E2-A14Q	FAM86B1	SNP	Missense_Mutation	8	12044059	G	A	39	51
BRCA	TCGA-E2-A14Q	RAD54B	SNP	Missense_Mutation	8	95392443	C	A	30	99
BRCA	TCGA-E2-A14Q	CORO2A	SNP	Missense_Mutation	9	100887118	C	T	18	93
BRCA	TCGA-E2-A14R	PRPF38B	DEL	Frame_Shift_Del	1	109238924	TGGGACTGGTTTGAATCCTTCCTTGATGA	-	59	78
BRCA	TCGA-E2-A14R	KCND3	SNP	Silent	1	112524764	G	A	33	50
BRCA	TCGA-E2-A14R	CCNL2	SNP	Splice_Site	1	1328842	T	C	55	87
BRCA	TCGA-E2-A14R	NBPF12	INS	Frame_Shift_Ins	1	146408106	-	A	29	45
BRCA	TCGA-E2-A14R	PRUNE	SNP	Silent	1	151006389	T	C	54	51
BRCA	TCGA-E2-A14R	LCE2B	SNP	Missense_Mutation	1	152659424	G	T	36	64
BRCA	TCGA-E2-A14R	NES	SNP	Silent	1	156640029	T	C	54	58
BRCA	TCGA-E2-A14R	CASQ1	SNP	Silent	1	160167383	G	A	39	36
BRCA	TCGA-E2-A14R	NME7	SNP	Missense_Mutation	1	169292459	T	G	56	56
BRCA	TCGA-E2-A14R	CROCC	SNP	Nonsense_Mutation	1	17266458	G	T	37	84
BRCA	TCGA-E2-A14R	SEC16B	SNP	Missense_Mutation	1	177917055	C	G	30	97
BRCA	TCGA-E2-A14R	FCAMR	SNP	Missense_Mutation	1	207132061	G	A	35	51
BRCA	TCGA-E2-A14R	PLXNA2	SNP	Silent	1	208257821	C	T	28	72
BRCA	TCGA-E2-A14R	OBSCN	SNP	Missense_Mutation	1	228506947	G	A	42	53
BRCA	TCGA-E2-A14R	OBSCN	SNP	Missense_Mutation	1	228509882	G	A	33	60
BRCA	TCGA-E2-A14R	GPR137B	SNP	Missense_Mutation	1	236341802	T	C	63	55
BRCA	TCGA-E2-A14R	ZNF642	SNP	Missense_Mutation	1	40945155	G	C	41	57
BRCA	TCGA-E2-A14R	ZZZ3	SNP	Missense_Mutation	1	78099029	G	A	41	85
BRCA	TCGA-E2-A14R	GBF1	SNP	Missense_Mutation	10	104128052	G	T	37	100
BRCA	TCGA-E2-A14R	TDRD1	SNP	Silent	10	115986919	G	C	45	53
BRCA	TCGA-E2-A14R	NEBL	SNP	Silent	10	21097581	C	A	31	44
BRCA	TCGA-E2-A14R	PFKP	SNP	Missense_Mutation	10	3178021	C	T	19	98
BRCA	TCGA-E2-A14R	HNRNPF	SNP	Missense_Mutation	10	43883017	C	T	31	68
BRCA	TCGA-E2-A14R	C10orf71	SNP	Missense_Mutation	10	50532560	G	T	41	51
BRCA	TCGA-E2-A14R	FAM190B	SNP	Missense_Mutation	10	86198279	A	T	16	77
BRCA	TCGA-E2-A14R	MUC2	SNP	Missense_Mutation	11	1101932	C	A	29	62
BRCA	TCGA-E2-A14R	DKK3	SNP	Missense_Mutation	11	12023920	C	T	28	49
BRCA	TCGA-E2-A14R	KRTAP5-4	SNP	Missense_Mutation	11	1643059	C	A	22	75
BRCA	TCGA-E2-A14R	EIF3M	SNP	Missense_Mutation	11	32608625	G	C	41	97
BRCA	TCGA-E2-A14R	FOLH1	SNP	Silent	11	49190796	G	A	41	56
BRCA	TCGA-E2-A14R	RASGRP2	SNP	Missense_Mutation	11	64503109	G	A	44	70
BRCA	TCGA-E2-A14R	MRPL49	SNP	Missense_Mutation	11	64889852	G	C	43	41
BRCA	TCGA-E2-A14R	RBM14	SNP	Missense_Mutation	11	66391939	T	C	56	58
BRCA	TCGA-E2-A14R	ENSG00000204455	SNP	Missense_Mutation	11	89595597	C	A	29	58
BRCA	TCGA-E2-A14R	UTP20	SNP	Missense_Mutation	12	101723085	G	T	44	100
BRCA	TCGA-E2-A14R	WDR66	SNP	Missense_Mutation	12	122396206	G	A	38	48
BRCA	TCGA-E2-A14R	GALNT9	SNP	Missense_Mutation	12	132862937	G	C	40	57
BRCA	TCGA-E2-A14R	DENND5B	SNP	Missense_Mutation	12	31551140	C	G	29	48
BRCA	TCGA-E2-A14R	SUGT1	SNP	Splice_site	13	53241054	G	C	35	90
BRCA	TCGA-E2-A14R	MBNL2	SNP	Missense_Mutation	13	97928584	A	C	9	80
BRCA	TCGA-E2-A14R	PSMB11	SNP	Silent	14	23511785	G	T	45	51
BRCA	TCGA-E2-A14R	SGPP1	SNP	Missense_Mutation	14	64153112	G	C	33	99
BRCA	TCGA-E2-A14R	SNAP23	SNP	Missense_Mutation	15	42805156	C	G	32	80
BRCA	TCGA-E2-A14R	TP53BP1	SNP	Missense_Mutation	15	43767790	C	T	24	56
BRCA	TCGA-E2-A14R	HOMER2	SNP	Missense_Mutation	15	83523466	G	T	46	72
BRCA	TCGA-E2-A14R	NTRK3	SNP	Missense_Mutation	15	88678619	C	G	19	65
BRCA	TCGA-E2-A14R	VWA3A	SNP	Missense_Mutation	16	22161158	T	G	55	76
BRCA	TCGA-E2-A14R	LAT	SNP	Missense_Mutation	16	28997485	C	A	22	59
BRCA	TCGA-E2-A14R	SRCAP	SNP	Missense_Mutation	16	30733960	G	C	35	68
BRCA	TCGA-E2-A14R	CDH11	SNP	Missense_Mutation	16	65025783	G	C	40	42
BRCA	TCGA-E2-A14R	FTSJD1	SNP	Missense_Mutation	16	71319781	G	C	41	56
BRCA	TCGA-E2-A14R	STAT5A	SNP	Missense_Mutation	17	40460235	G	A	39	65
BRCA	TCGA-E2-A14R	SDK2	SNP	Missense_Mutation	17	71426721	A	T	12	72
BRCA	TCGA-E2-A14R	TP53	SNP	Missense_Mutation	17	7578265	A	G	12	68
BRCA	TCGA-E2-A14R	GREB1L	SNP	Nonsense_Mutation	18	19020262	C	T	19	61
BRCA	TCGA-E2-A14R	CHST9	SNP	Missense_Mutation	18	24496887	C	G	26	89
BRCA	TCGA-E2-A14R	C19orf25	SNP	Missense_Mutation	19	1478671	G	C	44	49
BRCA	TCGA-E2-A14R	SYMPK	SNP	Missense_Mutation	19	46321248	A	T	8	87
BRCA	TCGA-E2-A14R	SIGLEC9	SNP	Silent	19	51631731	A	T	15	50
BRCA	TCGA-E2-A14R	CD33	SNP	Missense_Mutation	19	51728821	T	C	61	63
BRCA	TCGA-E2-A14R	ZNF665	SNP	Missense_Mutation	19	53668116	T	G	63	43
BRCA	TCGA-E2-A14R	NEB	SNP	Missense_Mutation	2	152527544	A	T	15	78
BRCA	TCGA-E2-A14R	CRIM1	DEL	In_Frame_Del	2	36623768	ACTGATGACCAACTGCTTGGTTTT	-	10	74
BRCA	TCGA-E2-A14R	USP34	SNP	Splice_Site	2	61505421	C	A	20	98
BRCA	TCGA-E2-A14R	ADRA2B	SNP	Missense_Mutation	2	96780849	C	T	18	51
BRCA	TCGA-E2-A14R	GGTLC1	SNP	Silent	20	23966412	G	T	45	58
BRCA	TCGA-E2-A14R	VSX1	SNP	Missense_Mutation	20	25060118	G	C	35	58
BRCA	TCGA-E2-A14R	SOGA1	SNP	Missense_Mutation	20	35406195	C	A	28	50
BRCA	TCGA-E2-A14R	FAM65C	SNP	Missense_Mutation	20	49208955	C	G	23	83
BRCA	TCGA-E2-A14R	ITGB2	SNP	Missense_Mutation	21	46309979	A	T	10	51
BRCA	TCGA-E2-A14R	COL18A1	SNP	Missense_Mutation	21	46897375	C	T	23	45
BRCA	TCGA-E2-A14R	UPB1	SNP	Splice_Site	22	24909455	T	A	59	77
BRCA	TCGA-E2-A14R	RBMXL3	SNP	Missense_Mutation	23	114425862	T	C	55	35
BRCA	TCGA-E2-A14R	GRIA3	SNP	Missense_Mutation	23	122538638	T	C	53	89
BRCA	TCGA-E2-A14R	BCORL1	SNP	Missense_Mutation	23	129147782	C	T	19	61
BRCA	TCGA-E2-A14R	MAGEB4	SNP	Missense_Mutation	23	30260876	C	G	32	47
BRCA	TCGA-E2-A14R	CACNA1F	SNP	Missense_Mutation	23	49076144	A	G	6	86
BRCA	TCGA-E2-A14R	ITIH6	SNP	Missense_Mutation	23	54780124	G	T	44	39
BRCA	TCGA-E2-A14R	TEX11	SNP	Missense_Mutation	23	70073144	G	A	34	49
BRCA	TCGA-E2-A14R	CYSLTR1	SNP	Missense_Mutation	23	77528833	C	A	32	62
BRCA	TCGA-E2-A14R	SLC6A1	DEL	Frame_Shift_Del	3	11070440	G	-	47	73
BRCA	TCGA-E2-A14R	TMEM108	SNP	Splice_Site	3	133109180	T	A	57	86
BRCA	TCGA-E2-A14R	GK5	SNP	Missense_Mutation	3	141890304	C	G	29	91
BRCA	TCGA-E2-A14R	AP2M1	SNP	Missense_Mutation	3	183896904	C	A	28	84
BRCA	TCGA-E2-A14R	ATP13A4	SNP	Missense_Mutation	3	193188758	C	G	27	52
BRCA	TCGA-E2-A14R	MUC20	SNP	Missense_Mutation	3	195452951	G	C	45	55
BRCA	TCGA-E2-A14R	MUC4	SNP	Missense_Mutation	3	195509429	A	G	11	50
BRCA	TCGA-E2-A14R	C3orf77	SNP	Missense_Mutation	3	44283717	C	A	22	53
BRCA	TCGA-E2-A14R	DHX30	SNP	Nonsense_Mutation	3	47889002	G	T	37	65
BRCA	TCGA-E2-A14R	NDST4	SNP	Silent	4	115791933	A	G	11	52
BRCA	TCGA-E2-A14R	ENSG00000225665	SNP	Silent	4	121263727	C	G	23	36
BRCA	TCGA-E2-A14R	BOD1L1	SNP	Missense_Mutation	4	13606196	A	T	10	62
BRCA	TCGA-E2-A14R	PRKG2	SNP	Missense_Mutation	4	82061764	T	C	53	26
BRCA	TCGA-E2-A14R	ARAP3	SNP	Missense_Mutation	5	141051178	T	C	62	54
BRCA	TCGA-E2-A14R	MTMR12	SNP	Missense_Mutation	5	32233994	G	C	44	98
BRCA	TCGA-E2-A14R	BRD9	SNP	Missense_Mutation	5	865540	T	A	55	56
BRCA	TCGA-E2-A14R	FIG4	SNP	Missense_Mutation	6	110107520	A	T	2	63
BRCA	TCGA-E2-A14R	HLA-DMB	SNP	Missense_Mutation	6	32905029	G	T	42	73
BRCA	TCGA-E2-A14R	FAM217A	SNP	Missense_Mutation	6	4077645	C	T	22	61
BRCA	TCGA-E2-A14R	DST	SNP	Missense_Mutation	6	56473155	A	C	4	51
BRCA	TCGA-E2-A14R	KHDC1	SNP	Silent	6	73951884	A	G	15	50
BRCA	TCGA-E2-A14R	FAM46A	SNP	Missense_Mutation	6	82461445	C	G	24	60
BRCA	TCGA-E2-A14R	C7orf60	SNP	Nonsense_Mutation	7	112462311	C	A	32	87
BRCA	TCGA-E2-A14R	CPA1	SNP	Missense_Mutation	7	130023284	A	G	8	75
BRCA	TCGA-E2-A14R	AGBL3	SNP	Missense_Mutation	7	134717625	G	A	37	73
BRCA	TCGA-E2-A14R	GALNTL5	SNP	Nonsense_Mutation	7	151716746	C	T	31	53
BRCA	TCGA-E2-A14R	MPLKIP	SNP	Missense_Mutation	7	40172716	C	G	28	65
BRCA	TCGA-E2-A14R	ABCA13	SNP	Missense_Mutation	7	48338055	A	T	8	50
BRCA	TCGA-E2-A14R	ASL	SNP	Missense_Mutation	7	65547366	G	C	36	57
BRCA	TCGA-E2-A14R	AZGP1	SNP	Missense_Mutation	7	99565858	G	A	42	50
BRCA	TCGA-E2-A14R	ANGPT1	SNP	Missense_Mutation	8	108334142	G	C	33	81
BRCA	TCGA-E2-A14R	MBOAT4	SNP	Missense_Mutation	8	29990295	G	A	46	53
BRCA	TCGA-E2-A14R	SLCO5A1	SNP	Silent	8	70588856	A	G	2	49
BRCA	TCGA-E2-A14R	C9orf174	SNP	Missense_Mutation	9	100092921	C	G	29	49
BRCA	TCGA-E2-A14S	LPHN2	SNP	Missense_Mutation	1	82409015	T	C	54	92
BRCA	TCGA-E2-A14S	PLEKHA1	SNP	Missense_Mutation	10	124177438	A	G	16	90
BRCA	TCGA-E2-A14S	AHNAK	SNP	Missense_Mutation	11	62284554	G	A	39	56
BRCA	TCGA-E2-A14S	NPAS4	SNP	Missense_Mutation	11	66188712	G	A	39	95
BRCA	TCGA-E2-A14S	MYO7A	SNP	Missense_Mutation	11	76893500	G	A	38	97
BRCA	TCGA-E2-A14S	ASCL3	SNP	Silent	11	8959451	G	A	38	49
BRCA	TCGA-E2-A14S	TRIM53	SNP	Missense_Mutation	11	89732527	G	A	39	33
BRCA	TCGA-E2-A14S	PDE3A	SNP	Silent	12	20522503	G	A	39	69
BRCA	TCGA-E2-A14S	SMARCC2	SNP	Silent	12	56565650	G	A	46	71
BRCA	TCGA-E2-A14S	VPS18	SNP	Missense_Mutation	15	41194898	C	G	19	100
BRCA	TCGA-E2-A14S	ADAMTS7	SNP	Missense_Mutation	15	79069734	G	T	45	45
BRCA	TCGA-E2-A14S	GRIN2A	SNP	Missense_Mutation	16	10273954	G	C	44	81
BRCA	TCGA-E2-A14S	CACNA1H	SNP	Silent	16	1268395	C	T	19	46
BRCA	TCGA-E2-A14S	CCP110	SNP	Silent	16	19548275	A	G	14	49
BRCA	TCGA-E2-A14S	ZNF668	SNP	Silent	16	31075619	G	A	39	6
BRCA	TCGA-E2-A14S	KLHL14	SNP	Missense_Mutation	18	30349869	G	C	39	96
BRCA	TCGA-E2-A14S	ENSG00000235297	SNP	Missense_Mutation	18	72057442	G	T	36	52
BRCA	TCGA-E2-A14S	CACNA1A	SNP	Missense_Mutation	19	13356070	G	A	39	68
BRCA	TCGA-E2-A14S	ZNF333	SNP	Missense_Mutation	19	14830057	C	T	21	73
BRCA	TCGA-E2-A14S	LOC100287226	SNP	Silent	19	22498943	T	C	57	49
BRCA	TCGA-E2-A14S	NMRK2	SNP	Missense_Mutation	19	3942216	G	A	38	42
BRCA	TCGA-E2-A14S	KIR3DL3	SNP	Silent	19	55247306	A	G	3	56
BRCA	TCGA-E2-A14S	USP29	SNP	Missense_Mutation	19	57640371	C	T	18	44
BRCA	TCGA-E2-A14S	MUC16	SNP	Silent	19	9069332	G	A	48	58
BRCA	TCGA-E2-A14S	CDK15	SNP	Missense_Mutation	2	202744815	C	T	23	66
BRCA	TCGA-E2-A14S	LOC100289192	SNP	Missense_Mutation	2	242438383	C	T	23	48
BRCA	TCGA-E2-A14S	ST3GAL5	SNP	Missense_Mutation	2	86073664	C	T	22	83
BRCA	TCGA-E2-A14S	RASSF2	SNP	Missense_Mutation	20	4771137	C	T	27	97
BRCA	TCGA-E2-A14S	LOC100287161	SNP	Missense_Mutation	22	24656759	G	A	43	85
BRCA	TCGA-E2-A14S	CPT1B	SNP	Missense_Mutation	22	51009679	T	C	55	72
BRCA	TCGA-E2-A14S	MAGEA3	SNP	Nonsense_Mutation	23	151936112	G	A	39	50
BRCA	TCGA-E2-A14S	PCDH11X	SNP	Nonsense_Mutation	23	91133194	C	A	29	61
BRCA	TCGA-E2-A14S	BTD	SNP	Missense_Mutation	3	15643051	C	A	25	51
BRCA	TCGA-E2-A14S	NAALADL2	SNP	Missense_Mutation	3	174974237	A	T	12	73
BRCA	TCGA-E2-A14S	LRRC15	SNP	Missense_Mutation	3	194080956	G	A	39	55
BRCA	TCGA-E2-A14S	SNRK	SNP	Missense_Mutation	3	43389153	C	T	27	76
BRCA	TCGA-E2-A14S	RAD18	SNP	Missense_Mutation	3	8983486	T	A	52	53
BRCA	TCGA-E2-A14S	PIK3R1	INS	In_Frame_Ins	5	67589601	-	GTT	7	89
BRCA	TCGA-E2-A14S	MTRF1L	SNP	Missense_Mutation	6	153315705	C	G	28	61
BRCA	TCGA-E2-A14S	KIAA0240	SNP	Missense_Mutation	6	42832565	A	C	4	61
BRCA	TCGA-E2-A14T	KIAA1614	SNP	Missense_Mutation	1	180904418	G	A	38	54
BRCA	TCGA-E2-A14T	EIF4G3	SNP	Silent	1	21167444	G	A	43	56
BRCA	TCGA-E2-A14T	LGALS8	DEL	In_Frame_Del	1	236706922	AGG	-	3	68
BRCA	TCGA-E2-A14T	CYP4A22	SNP	Silent	1	47610236	C	T	25	53
BRCA	TCGA-E2-A14T	ZNF239	SNP	Missense_Mutation	10	44052732	C	G	29	61
BRCA	TCGA-E2-A14T	NEUROG3	SNP	Missense_Mutation	10	71332756	C	G	19	45
BRCA	TCGA-E2-A14T	GATA3	INS	Frame_Shift_Ins	10	8115874	-	G	31	85
BRCA	TCGA-E2-A14T	EXOC6	SNP	Silent	10	94653133	G	A	38	50
BRCA	TCGA-E2-A14T	ABCC8	SNP	Missense_Mutation	11	17418752	C	T	31	85
BRCA	TCGA-E2-A14T	NUP160	SNP	Missense_Mutation	11	47808045	C	T	28	76
BRCA	TCGA-E2-A14T	SPTBN2	SNP	Missense_Mutation	11	66456618	G	A	38	65
BRCA	TCGA-E2-A14T	ATP2A2	SNP	Missense_Mutation	12	110781179	C	T	23	100
BRCA	TCGA-E2-A14T	PTMS	SNP	Nonsense_Mutation	12	6879111	G	T	41	70
BRCA	TCGA-E2-A14T	PTMS	SNP	Splice_Site	12	6879322	G	C	33	69
BRCA	TCGA-E2-A14T	TBC1D4	DEL	Frame_Shift_Del	13	75933979	TC	-	50	64
BRCA	TCGA-E2-A14T	ZBTB42	SNP	Missense_Mutation	14	105268210	G	A	37	72
BRCA	TCGA-E2-A14T	UBR7	DEL	Frame_Shift_Del	14	93686624	C	-	30	67
BRCA	TCGA-E2-A14T	USP31	SNP	Missense_Mutation	16	23096260	C	T	19	83
BRCA	TCGA-E2-A14T	SPAG5	SNP	Missense_Mutation	17	26919888	T	A	49	45
BRCA	TCGA-E2-A14T	DDX42	SNP	Missense_Mutation	17	61886223	G	A	37	86
BRCA	TCGA-E2-A14T	ITPKC	SNP	Silent	19	41235234	G	T	46	65
BRCA	TCGA-E2-A14T	KLK7	SNP	Missense_Mutation	19	51483714	G	A	40	33
BRCA	TCGA-E2-A14T	TTN	SNP	Missense_Mutation	2	179429426	A	C	2	94
BRCA	TCGA-E2-A14T	KIF1A	SNP	Missense_Mutation	2	241662889	T	A	54	85
BRCA	TCGA-E2-A14T	EXOC6B	SNP	Missense_Mutation	2	72406489	C	G	30	74
BRCA	TCGA-E2-A14T	ITSN1	SNP	Missense_Mutation	21	35183459	G	A	38	56
BRCA	TCGA-E2-A14T	CKS1BP6	SNP	Silent	23	30635657	C	T	21	49
BRCA	TCGA-E2-A14T	ALDH1L1	SNP	Missense_Mutation	3	125828868	C	A	17	49
BRCA	TCGA-E2-A14T	CELSR3	SNP	Silent	3	48699138	C	T	31	50
BRCA	TCGA-E2-A14T	DOCK2	SNP	Missense_Mutation	5	169098135	C	T	19	66
BRCA	TCGA-E2-A14T	MOGAT3	SNP	Missense_Mutation	7	100839243	C	A	25	47
BRCA	TCGA-E2-A14T	ATXN7L1	SNP	Missense_Mutation	7	105255024	T	A	51	72
BRCA	TCGA-E2-A14T	B4GALT1	SNP	Missense_Mutation	9	33135287	G	A	47	96
BRCA	TCGA-E2-A14T	LOC100287684	SNP	Nonsense_Mutation	9	6793146	G	A	37	57
BRCA	TCGA-E2-A14V	ATAD3B	SNP	Splice_Site	1	1425849	G	C	42	55
BRCA	TCGA-E2-A14V	IGSF9	SNP	Silent	1	159900122	G	A	35	53
BRCA	TCGA-E2-A14V	ITLN2	SNP	Nonsense_Mutation	1	160920836	G	C	48	83
BRCA	TCGA-E2-A14V	CACNA1E	SNP	Missense_Mutation	1	181684488	G	T	38	96
BRCA	TCGA-E2-A14V	CFH	SNP	Missense_Mutation	1	196694377	C	A	30	61
BRCA	TCGA-E2-A14V	KCNH1	SNP	Missense_Mutation	1	210856855	G	A	37	70
BRCA	TCGA-E2-A14V	DISP1	SNP	Nonsense_Mutation	1	223176630	C	T	23	49
BRCA	TCGA-E2-A14V	NID1	DEL	Splice_Site	1	236208972	GAACGTGTTTCTCTGT	-	41	64
BRCA	TCGA-E2-A14V	RYR2	SNP	Silent	1	237777585	C	T	29	47
BRCA	TCGA-E2-A14V	DCDC2B	SNP	Missense_Mutation	1	32681437	T	G	55	50
BRCA	TCGA-E2-A14V	C1orf94	SNP	Missense_Mutation	1	34663261	G	T	35	57
BRCA	TCGA-E2-A14V	ITPRIP	SNP	Missense_Mutation	10	106075563	G	A	40	57
BRCA	TCGA-E2-A14V	SORCS3	SNP	Silent	10	106737218	G	A	35	53
BRCA	TCGA-E2-A14V	CCDC172	SNP	Missense_Mutation	10	118117417	G	T	36	30
BRCA	TCGA-E2-A14V	PHYH	SNP	Missense_Mutation	10	13320306	G	C	33	76
BRCA	TCGA-E2-A14V	LOC100289151	SNP	Missense_Mutation	10	15057441	C	G	30	55
BRCA	TCGA-E2-A14V	NXPE2	SNP	Missense_Mutation	11	114569175	C	G	32	52
BRCA	TCGA-E2-A14V	CYB5R2	SNP	Missense_Mutation	11	7689777	C	G	32	49
BRCA	TCGA-E2-A14V	GCN1L1	SNP	Silent	12	120613011	C	T	23	27
BRCA	TCGA-E2-A14V	CCDC62	SNP	Silent	12	123265847	G	A	38	42
BRCA	TCGA-E2-A14V	ARHGEF25	SNP	Missense_Mutation	12	58010663	G	A	45	83
BRCA	TCGA-E2-A14V	AGAP2	SNP	Missense_Mutation	12	58125611	C	A	27	93
BRCA	TCGA-E2-A14V	RAB21	SNP	Missense_Mutation	12	72176409	T	C	52	92
BRCA	TCGA-E2-A14V	OR11H6	SNP	Missense_Mutation	14	20691885	A	T	8	68
BRCA	TCGA-E2-A14V	SLC7A7	SNP	Missense_Mutation	14	23248035	T	G	60	90
BRCA	TCGA-E2-A14V	EIF2S1	SNP	Missense_Mutation	14	67847477	G	A	37	88
BRCA	TCGA-E2-A14V	PIGB	SNP	Missense_Mutation	15	55647072	G	A	45	97
BRCA	TCGA-E2-A14V	EFTUD1	SNP	Missense_Mutation	15	82450123	G	A	40	100
BRCA	TCGA-E2-A14V	SMG1	INS	Frame_Shift_Ins	16	18903661	-	AA	49	90
BRCA	TCGA-E2-A14V	PDILT	SNP	Missense_Mutation	16	20387489	C	G	29	66
BRCA	TCGA-E2-A14V	DNAH3	SNP	Missense_Mutation	16	20976354	T	G	56	46
BRCA	TCGA-E2-A14V	EARS2	SNP	Missense_Mutation	16	23563498	C	G	32	50
BRCA	TCGA-E2-A14V	SRCAP	SNP	Missense_Mutation	16	30724033	C	G	18	80
BRCA	TCGA-E2-A14V	NLRC3	SNP	Missense_Mutation	16	3611719	G	A	37	65
BRCA	TCGA-E2-A14V	PHLPP2	SNP	Missense_Mutation	16	71682825	C	T	31	66
BRCA	TCGA-E2-A14V	THRA	SNP	Missense_Mutation	17	38230773	G	T	43	63
BRCA	TCGA-E2-A14V	RSAD1	SNP	Missense_Mutation	17	48560768	G	T	47	61
BRCA	TCGA-E2-A14V	MBTD1	SNP	Missense_Mutation	17	49270286	C	T	31	100
BRCA	TCGA-E2-A14V	KCNJ16	SNP	Silent	17	68128510	C	T	29	42
BRCA	TCGA-E2-A14V	EVPL	SNP	Missense_Mutation	17	74006302	A	C	6	53
BRCA	TCGA-E2-A14V	AMAC1L1	SNP	Nonsense_Mutation	18	11644698	C	T	25	51
BRCA	TCGA-E2-A14V	ENSG00000215512	SNP	Missense_Mutation	18	15325695	A	G	4	64
BRCA	TCGA-E2-A14V	RPL17	SNP	Missense_Mutation	18	47015767	C	T	17	99
BRCA	TCGA-E2-A14V	LAMA1	SNP	Missense_Mutation	18	6942104	G	A	45	69
BRCA	TCGA-E2-A14V	ZSWIM4	SNP	Missense_Mutation	19	13941680	C	T	31	78
BRCA	TCGA-E2-A14V	BIRC8	SNP	Missense_Mutation	19	53793014	C	T	30	74
BRCA	TCGA-E2-A14V	CACNG7	SNP	Silent	19	54416214	G	A	38	46
BRCA	TCGA-E2-A14V	CATSPERD	SNP	Missense_Mutation	19	5776305	C	T	31	60
BRCA	TCGA-E2-A14V	ZNF530	SNP	Missense_Mutation	19	58117885	C	A	32	46
BRCA	TCGA-E2-A14V	OR7G1	SNP	Missense_Mutation	19	9226091	C	A	20	66
BRCA	TCGA-E2-A14V	DIRC1	SNP	Missense_Mutation	2	189599494	C	A	25	48
BRCA	TCGA-E2-A14V	EHBP1	SNP	Missense_Mutation	2	63169992	C	G	32	99
BRCA	TCGA-E2-A14V	AAK1	DEL	In_Frame_Del	2	69870164	CTT	-	20	72
BRCA	TCGA-E2-A14V	SYCP2	SNP	Missense_Mutation	20	58444998	C	G	32	34
BRCA	TCGA-E2-A14V	CHGB	SNP	Missense_Mutation	20	5903673	C	G	29	62
BRCA	TCGA-E2-A14V	XKR3	SNP	Missense_Mutation	22	17288863	G	T	35	61
BRCA	TCGA-E2-A14V	UTP14A	SNP	Missense_Mutation	23	129063526	A	T	4	64
BRCA	TCGA-E2-A14V	FAM58A	SNP	Missense_Mutation	23	152853866	G	A	33	66
BRCA	TCGA-E2-A14V	ARHGAP31	SNP	Missense_Mutation	3	119099788	C	A	26	64
BRCA	TCGA-E2-A14V	PAQR9	SNP	Missense_Mutation	3	142681942	C	G	28	68
BRCA	TCGA-E2-A14V	MED12L	SNP	Silent	3	151085954	C	T	19	39
BRCA	TCGA-E2-A14V	PIK3CA	SNP	Missense_Mutation	3	178952075	A	T	9	91
BRCA	TCGA-E2-A14V	SCN5A	SNP	Missense_Mutation	3	38592777	T	C	58	89
BRCA	TCGA-E2-A14V	SETD2	SNP	Missense_Mutation	3	47158198	A	G	6	93
BRCA	TCGA-E2-A14V	WDFY3	SNP	Missense_Mutation	4	85642669	C	T	30	99
BRCA	TCGA-E2-A14V	DGKQ	SNP	Silent	4	955823	C	G	29	49
BRCA	TCGA-E2-A14V	SLCO6A1	SNP	Silent	5	101813402	T	A	59	44
BRCA	TCGA-E2-A14V	PPIP5K2	SNP	Missense_Mutation	5	102482291	C	T	21	100
BRCA	TCGA-E2-A14V	PCDHB6	SNP	Silent	5	140531491	C	T	19	64
BRCA	TCGA-E2-A14V	SYNPO	SNP	Silent	5	150028362	G	A	38	44
BRCA	TCGA-E2-A14V	CDH9	SNP	Missense_Mutation	5	26885845	C	T	19	77
BRCA	TCGA-E2-A14V	SPEF2	SNP	Splice_Site	5	35800068	A	T	7	79
BRCA	TCGA-E2-A14V	CDC20B	SNP	Missense_Mutation	5	54436202	C	T	19	56
BRCA	TCGA-E2-A14V	KIAA0319	SNP	Missense_Mutation	6	24566862	T	C	49	58
BRCA	TCGA-E2-A14V	EXOC2	SNP	Missense_Mutation	6	497377	C	G	30	100
BRCA	TCGA-E2-A14V	ASZ1	SNP	Missense_Mutation	7	117021097	G	C	33	81
BRCA	TCGA-E2-A14V	CDCA7L	SNP	Missense_Mutation	7	21946010	C	T	23	98
BRCA	TCGA-E2-A14V	MTBP	SNP	Missense_Mutation	8	121468800	C	G	29	86
BRCA	TCGA-E2-A14V	RNF139	SNP	Missense_Mutation	8	125498596	G	A	33	96
BRCA	TCGA-E2-A14V	LPL	SNP	Missense_Mutation	8	19805748	C	T	17	64
BRCA	TCGA-E2-A14V	ENTPD4	SNP	Missense_Mutation	8	23302096	G	C	41	96
BRCA	TCGA-E2-A14V	ADAM2	SNP	Silent	8	39695672	G	A	37	51
BRCA	TCGA-E2-A14V	ZNF483	SNP	Silent	9	114305318	T	C	58	47
BRCA	TCGA-E2-A14V	COL5A1	SNP	Silent	9	137620530	C	T	19	38
BRCA	TCGA-E2-A14V	FAM75E1	SNP	Missense_Mutation	9	90501430	G	C	46	51
BRCA	TCGA-E2-A14V	OMD	INS	Frame_Shift_Ins	9	95178955	-	TGCT	4	76
BRCA	TCGA-E2-A14W	CTTNBP2NL	DEL	In_Frame_Del	1	112997128	GAT	-	33	99
BRCA	TCGA-E2-A14W	HFE2	SNP	Missense_Mutation	1	145415526	C	G	30	44
BRCA	TCGA-E2-A14W	ITGA10	SNP	Silent	1	145530313	C	T	17	63
BRCA	TCGA-E2-A14W	OLFML2B	SNP	Missense_Mutation	1	161953515	C	G	25	83
BRCA	TCGA-E2-A14W	ATP13A2	SNP	Nonsense_Mutation	1	17316489	G	A	47	84
BRCA	TCGA-E2-A14W	OR2T34	SNP	Missense_Mutation	1	248737334	G	T	42	86
BRCA	TCGA-E2-A14W	INADL	DEL	Frame_Shift_Del	1	62293244	C	-	30	51
BRCA	TCGA-E2-A14W	MYPN	DEL	Frame_Shift_Del	10	69955248	GCCCATTC	-	46	55
BRCA	TCGA-E2-A14W	GRID1	SNP	Missense_Mutation	10	87615835	G	C	41	83
BRCA	TCGA-E2-A14W	PLCE1	SNP	Missense_Mutation	10	96058171	T	A	50	45
BRCA	TCGA-E2-A14W	DSCAML1	SNP	Missense_Mutation	11	117308077	G	A	40	74
BRCA	TCGA-E2-A14W	ABCC8	SNP	Missense_Mutation	11	17482153	C	T	27	86
BRCA	TCGA-E2-A14W	KIAA1549L	SNP	Silent	11	33667477	G	A	39	12
BRCA	TCGA-E2-A14W	FADS2	SNP	Missense_Mutation	11	61624993	G	C	33	48
BRCA	TCGA-E2-A14W	PYGM	SNP	Splice_Site	11	64525907	A	T	14	75
BRCA	TCGA-E2-A14W	CAPN1	SNP	Missense_Mutation	11	64972292	G	A	42	93
BRCA	TCGA-E2-A14W	UTP20	SNP	Missense_Mutation	12	101705565	C	A	28	72
BRCA	TCGA-E2-A14W	SLC24A6	DEL	Frame_Shift_Del	12	113753164	C	-	18	64
BRCA	TCGA-E2-A14W	CIT	SNP	Missense_Mutation	12	120295405	C	G	24	54
BRCA	TCGA-E2-A14W	FBRSL1	SNP	Missense_Mutation	12	133158042	T	A	54	48
BRCA	TCGA-E2-A14W	NAV3	SNP	Missense_Mutation	12	78542637	C	T	27	61
BRCA	TCGA-E2-A14W	BRCA2	DEL	Frame_Shift_Del	13	32907409	ATCTT	-	8	64
BRCA	TCGA-E2-A14W	PATL2	SNP	Missense_Mutation	15	44962197	G	A	35	90
BRCA	TCGA-E2-A14W	SORD	SNP	Missense_Mutation	15	45335550	A	G	8	85
BRCA	TCGA-E2-A14W	NEO1	SNP	Missense_Mutation	15	73409162	A	C	2	76
BRCA	TCGA-E2-A14W	KIAA1199	SNP	Silent	15	81216988	C	G	29	53
BRCA	TCGA-E2-A14W	BCMO1	SNP	Missense_Mutation	16	81303899	G	A	37	61
BRCA	TCGA-E2-A14W	ARHGAP23	SNP	Missense_Mutation	17	36622726	C	T	23	55
BRCA	TCGA-E2-A14W	CAMKK1	DEL	In_Frame_Del	17	3775903	AATCGTCGATGAATGGGC	-	1	61
BRCA	TCGA-E2-A14W	METTL23	SNP	Nonsense_Mutation	17	74729124	C	G	29	84
BRCA	TCGA-E2-A14W	MGAT5B	SNP	Missense_Mutation	17	74934211	C	A	28	62
BRCA	TCGA-E2-A14W	FHOD3	SNP	Missense_Mutation	18	34289076	A	G	9	49
BRCA	TCGA-E2-A14W	CCDC159	SNP	Silent	19	11464539	C	T	31	50
BRCA	TCGA-E2-A14W	JAK3	DEL	Frame_Shift_Del	19	17954274	AGCCCAA	-	7	55
BRCA	TCGA-E2-A14W	RYR1	SNP	Missense_Mutation	19	38990591	C	A	17	76
BRCA	TCGA-E2-A14W	CPT1C	SNP	Missense_Mutation	19	50195607	T	A	54	68
BRCA	TCGA-E2-A14W	LRRC4B	SNP	Silent	19	51022417	G	T	38	91
BRCA	TCGA-E2-A14W	NLRP12	SNP	Missense_Mutation	19	54307284	C	T	30	50
BRCA	TCGA-E2-A14W	ENSG00000186629	SNP	Missense_Mutation	19	6981117	T	A	56	52
BRCA	TCGA-E2-A14W	OR7D4	DEL	Frame_Shift_Del	19	9324875	CC	-	30	54
BRCA	TCGA-E2-A14W	SULT1C4	SNP	Silent	2	108998294	T	C	54	51
BRCA	TCGA-E2-A14W	KCNH7	DEL	Frame_Shift_Del	2	163236470	A	-	10	54
BRCA	TCGA-E2-A14W	DNAH7	SNP	Missense_Mutation	2	196749335	T	C	52	56
BRCA	TCGA-E2-A14W	SUMO1	SNP	Nonstop_Mutation	2	203084812	A	C	7	52
BRCA	TCGA-E2-A14W	DYTN	SNP	Missense_Mutation	2	207530636	A	C	16	23
BRCA	TCGA-E2-A14W	C2orf43	DEL	In_Frame_Del	2	20886840	ATA	-	8	50
BRCA	TCGA-E2-A14W	MAP2	SNP	Silent	2	210559282	C	T	17	54
BRCA	TCGA-E2-A14W	TNS1	SNP	Missense_Mutation	2	218686502	C	T	28	76
BRCA	TCGA-E2-A14W	HEATR5B	SNP	Missense_Mutation	2	37217922	C	G	29	100
BRCA	TCGA-E2-A14W	SOS1	SNP	Missense_Mutation	2	39249723	G	A	47	100
BRCA	TCGA-E2-A14W	B3GNT2	SNP	Missense_Mutation	2	62450052	A	T	14	60
BRCA	TCGA-E2-A14W	TRABD2A	SNP	Missense_Mutation	2	85066288	A	T	3	68
BRCA	TCGA-E2-A14W	NCAM2	SNP	Silent	21	22664443	A	T	5	48
BRCA	TCGA-E2-A14W	ADAMTS1	DEL	Frame_Shift_Del	21	28212818	GAGGTGCCAGG	-	37	71
BRCA	TCGA-E2-A14W	IFNAR2	SNP	Missense_Mutation	21	34635572	G	A	41	55
BRCA	TCGA-E2-A14W	PCNT	SNP	Missense_Mutation	21	47783719	G	A	41	64
BRCA	TCGA-E2-A14W	SPECC1L	SNP	Missense_Mutation	22	24765272	A	C	1	91
BRCA	TCGA-E2-A14W	MYO18B	SNP	Missense_Mutation	22	26299726	G	T	36	44
BRCA	TCGA-E2-A14W	KREMEN1	SNP	Missense_Mutation	22	29534662	G	T	42	60
BRCA	TCGA-E2-A14W	TYMP	SNP	Silent	22	50967953	C	T	29	51
BRCA	TCGA-E2-A14W	DMD	SNP	Splice_site	23	32328199	C	T	24	83
BRCA	TCGA-E2-A14W	ELK1	SNP	Missense_Mutation	23	47498688	G	C	41	70
BRCA	TCGA-E2-A14W	PAGE1	SNP	Missense_Mutation	23	49454099	C	G	21	56
BRCA	TCGA-E2-A14W	SHROOM4	INS	Frame_Shift_Ins	23	50350726	-	C	62	66
BRCA	TCGA-E2-A14W	VCX3A	SNP	Missense_Mutation	23	6451836	C	G	30	45
BRCA	TCGA-E2-A14W	RGAG4	SNP	Missense_Mutation	23	71351178	G	C	37	58
BRCA	TCGA-E2-A14W	VCX	SNP	Missense_Mutation	23	7812007	G	C	41	50
BRCA	TCGA-E2-A14W	PPP2R3A	SNP	Silent	3	135721060	C	A	23	47
BRCA	TCGA-E2-A14W	PPP2R3A	SNP	Missense_Mutation	3	135745705	C	T	17	82
BRCA	TCGA-E2-A14W	WDR49	SNP	Missense_Mutation	3	167320043	T	G	61	59
BRCA	TCGA-E2-A14W	SATB1	SNP	Missense_Mutation	3	18458465	A	T	3	92
BRCA	TCGA-E2-A14W	CYP8B1	DEL	In_Frame_Del	3	42916934	TGAGTG	-	55	33
BRCA	TCGA-E2-A14W	TMEM89	DEL	In_Frame_Del	3	48658374	GTGCAGGAC	-	48	51
BRCA	TCGA-E2-A14W	CRYBG3	SNP	Missense_Mutation	3	97614826	A	G	8	62
BRCA	TCGA-E2-A14W	CENPE	SNP	Missense_Mutation	4	104066383	C	T	30	58
BRCA	TCGA-E2-A14W	LETM1	SNP	Splice_Site	4	1836571	C	A	18	96
BRCA	TCGA-E2-A14W	ENAM	SNP	Missense_Mutation	4	71510070	G	C	36	53
BRCA	TCGA-E2-A14W	GPRIN3	DEL	Frame_Shift_Del	4	90169748	GTTTTGTGGCC	-	48	54
BRCA	TCGA-E2-A14W	CEP120	SNP	Missense_Mutation	5	122729131	A	C	1	55
BRCA	TCGA-E2-A14W	ZNF608	DEL	In_Frame_Del	5	124080558	TCCAAATCAGCG	-	54	92
BRCA	TCGA-E2-A14W	ANXA6	SNP	Missense_Mutation	5	150483215	C	G	21	78
BRCA	TCGA-E2-A14W	GHR	SNP	Missense_Mutation	5	42718684	G	A	41	87
BRCA	TCGA-E2-A14W	ZFYVE16	DEL	Frame_Shift_Del	5	79743961	G	-	47	51
BRCA	TCGA-E2-A14W	MAS1	SNP	Missense_Mutation	6	160328951	G	C	45	82
BRCA	TCGA-E2-A14W	HIST1H1C	DEL	In_Frame_Del	6	26056168	CGCGGCCGGCTTCTT	-	23	34
BRCA	TCGA-E2-A14W	OR2B6	SNP	Silent	6	27925573	C	G	29	54
BRCA	TCGA-E2-A14W	CPNE5	SNP	Missense_Mutation	6	36710076	G	C	43	61
BRCA	TCGA-E2-A14W	ANKRD6	SNP	Missense_Mutation	6	90338952	C	G	32	60
BRCA	TCGA-E2-A14W	BACH2	SNP	Silent	6	90660211	G	A	46	55
BRCA	TCGA-E2-A14W	RELN	SNP	Missense_Mutation	7	103183270	C	G	20	50
BRCA	TCGA-E2-A14W	PLEKHA8	DEL	Splice_site	7	30092481	AGGTAAAAACAAA	-	7	76
BRCA	TCGA-E2-A14W	DPY19L1	SNP	Missense_Mutation	7	35057529	T	A	60	67
BRCA	TCGA-E2-A14W	PDGFRL	SNP	Missense_Mutation	8	17486008	T	C	54	89
BRCA	TCGA-E2-A14W	PREX2	SNP	Silent	8	69002851	G	A	36	59
BRCA	TCGA-E2-A14X	BCAR3	SNP	Silent	1	94032999	C	T	27	40
BRCA	TCGA-E2-A14X	TUBA3C	SNP	Silent	13	19748195	G	A	35	81
BRCA	TCGA-E2-A14X	OR6S1	SNP	Silent	14	21109743	G	C	33	53
BRCA	TCGA-E2-A14X	G2E3	SNP	Silent	14	31071093	C	T	17	61
BRCA	TCGA-E2-A14X	ARHGAP5	SNP	Missense_Mutation	14	32562091	G	A	40	100
BRCA	TCGA-E2-A14X	AQR	SNP	Missense_Mutation	15	35168164	A	G	16	88
BRCA	TCGA-E2-A14X	ZFP106	SNP	Missense_Mutation	15	42740787	G	C	37	73
BRCA	TCGA-E2-A14X	USP31	SNP	Silent	16	23116870	T	C	56	51
BRCA	TCGA-E2-A14X	WFIKKN1	SNP	Missense_Mutation	16	682837	G	A	38	96
BRCA	TCGA-E2-A14X	TP53	SNP	Nonsense_Mutation	17	7578212	G	A	37	66
BRCA	TCGA-E2-A14X	DNAH17	SNP	Silent	17	76471537	G	A	40	44
BRCA	TCGA-E2-A14X	ZNF91	SNP	Missense_Mutation	19	23542476	C	G	30	83
BRCA	TCGA-E2-A14X	TGFB1	SNP	Silent	19	41858878	G	T	42	55
BRCA	TCGA-E2-A14X	TTN	SNP	Missense_Mutation	2	179480082	C	T	19	100
BRCA	TCGA-E2-A14X	PLXNA3	SNP	Missense_Mutation	23	153699919	G	A	37	94
BRCA	TCGA-E2-A14X	NAP1L2	SNP	Silent	23	72433234	A	G	9	42
BRCA	TCGA-E2-A14X	MYH15	SNP	Missense_Mutation	3	108129643	G	T	39	58
BRCA	TCGA-E2-A14X	GAP43	SNP	Missense_Mutation	3	115382754	G	T	41	48
BRCA	TCGA-E2-A14X	HSPBAP1	SNP	Missense_Mutation	3	122459884	G	A	47	79
BRCA	TCGA-E2-A14X	CDHR4	SNP	Missense_Mutation	3	49832471	G	A	39	61
BRCA	TCGA-E2-A14X	TLR3	SNP	Missense_Mutation	4	187003591	C	T	31	58
BRCA	TCGA-E2-A14X	CTNND2	SNP	Missense_Mutation	5	11346626	C	G	28	76
BRCA	TCGA-E2-A14X	ADAMTS2	SNP	Silent	5	178608136	G	A	40	39
BRCA	TCGA-E2-A14X	TARS	SNP	Missense_Mutation	5	33453503	G	A	45	100
BRCA	TCGA-E2-A14X	RDBP	SNP	Missense_Mutation	6	31922367	C	T	23	93
BRCA	TCGA-E2-A14X	HECW1	SNP	Silent	7	43591895	C	A	31	40
BRCA	TCGA-E2-A14Y	ATP1A1	SNP	Splice_site	1	116933404	G	A	44	90
BRCA	TCGA-E2-A14Y	FLG	SNP	Missense_Mutation	1	152278409	A	T	10	52
BRCA	TCGA-E2-A14Y	OR10K1	SNP	Missense_Mutation	1	158436273	A	T	2	59
BRCA	TCGA-E2-A14Y	PDZD8	SNP	Missense_Mutation	10	119078457	C	T	32	86
BRCA	TCGA-E2-A14Y	PCDH15	SNP	Nonsense_Mutation	10	56077174	G	A	38	60
BRCA	TCGA-E2-A14Y	ANK3	SNP	Missense_Mutation	10	61946501	C	G	32	84
BRCA	TCGA-E2-A14Y	AHNAK	SNP	Silent	11	62297977	T	C	62	44
BRCA	TCGA-E2-A14Y	C11orf85	DEL	Splice_Site	11	64722223	CCCTAC	-	30	50
BRCA	TCGA-E2-A14Y	PLEKHG6	SNP	Silent	12	6426507	C	T	30	51
BRCA	TCGA-E2-A14Y	MGA	DEL	Frame_Shift_Del	15	42002989	G	-	47	65
BRCA	TCGA-E2-A14Y	TIPIN	SNP	Missense_Mutation	15	66629421	C	G	30	64
BRCA	TCGA-E2-A14Y	ISLR	SNP	Silent	15	74468237	G	A	38	34
BRCA	TCGA-E2-A14Y	SNTB2	SNP	Silent	16	69294160	A	G	2	54
BRCA	TCGA-E2-A14Y	LOC732391	SNP	Nonsense_Mutation	17	15468937	C	T	30	78
BRCA	TCGA-E2-A14Y	SEZ6	SNP	Silent	17	27296863	G	A	45	56
BRCA	TCGA-E2-A14Y	ARRB2	SNP	Missense_Mutation	17	4621248	C	T	29	67
BRCA	TCGA-E2-A14Y	TP53	SNP	Missense_Mutation	17	7578524	G	C	47	97
BRCA	TCGA-E2-A14Y	KANK2	SNP	Missense_Mutation	19	11277272	C	T	32	67
BRCA	TCGA-E2-A14Y	AKAP8L	SNP	Silent	19	15511970	G	C	39	20
BRCA	TCGA-E2-A14Y	ZNF540	SNP	Missense_Mutation	19	38104051	G	A	45	43
BRCA	TCGA-E2-A14Y	LMTK3	SNP	Silent	19	49014822	G	A	39	46
BRCA	TCGA-E2-A14Y	TSHZ2	SNP	Missense_Mutation	20	51871700	G	A	39	82
BRCA	TCGA-E2-A14Y	KIAA1210	SNP	Missense_Mutation	23	118284280	G	A	39	32
BRCA	TCGA-E2-A14Y	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A14Y	LAMB2	SNP	Missense_Mutation	3	49159432	C	T	18	59
BRCA	TCGA-E2-A14Y	FGFBP2	SNP	Missense_Mutation	4	15964689	G	T	43	81
BRCA	TCGA-E2-A14Y	MTRR	SNP	Missense_Mutation	5	7889262	C	G	28	63
BRCA	TCGA-E2-A14Y	EFHA2	SNP	Missense_Mutation	8	16961987	G	C	45	93
BRCA	TCGA-E2-A14Y	ANK1	SNP	Missense_Mutation	8	41582042	G	A	45	100
BRCA	TCGA-E2-A14Y	HAUS6	SNP	Missense_Mutation	9	19096691	G	C	33	70
BRCA	TCGA-E2-A14Z	AMPD1	SNP	Missense_Mutation	1	115226908	C	G	20	62
BRCA	TCGA-E2-A14Z	TATDN3	SNP	Missense_Mutation	1	212985604	G	A	45	55
BRCA	TCGA-E2-A14Z	GMEB1	SNP	Missense_Mutation	1	29023445	G	A	45	98
BRCA	TCGA-E2-A14Z	PKD2L1	SNP	Missense_Mutation	10	102054793	C	T	19	53
BRCA	TCGA-E2-A14Z	PTEN	DEL	Frame_Shift_Del	10	89717727	GTGATATCAAA	-	44	96
BRCA	TCGA-E2-A14Z	CYP2C19	SNP	Silent	10	96580363	C	A	30	39
BRCA	TCGA-E2-A14Z	PKNOX2	SNP	Missense_Mutation	11	125280153	T	C	59	89
BRCA	TCGA-E2-A14Z	KIRREL3	SNP	Silent	11	126396533	C	T	23	16
BRCA	TCGA-E2-A14Z	OR51Q1	SNP	Missense_Mutation	11	5444328	C	G	25	62
BRCA	TCGA-E2-A14Z	OR5R1	SNP	Silent	11	56185676	T	C	49	44
BRCA	TCGA-E2-A14Z	ROM1	SNP	Silent	11	62381062	G	T	46	55
BRCA	TCGA-E2-A14Z	DTX1	SNP	Missense_Mutation	12	113532664	T	A	59	73
BRCA	TCGA-E2-A14Z	NBEA	SNP	Silent	13	35517230	C	T	31	94
BRCA	TCGA-E2-A14Z	VWA8	SNP	Missense_Mutation	13	42149921	C	T	29	30
BRCA	TCGA-E2-A14Z	HAUS4	SNP	Missense_Mutation	14	23421871	G	A	35	80
BRCA	TCGA-E2-A14Z	ZKSCAN2	SNP	Missense_Mutation	16	25266659	C	T	18	50
BRCA	TCGA-E2-A14Z	ZFHX3	SNP	Silent	16	72984482	G	A	37	50
BRCA	TCGA-E2-A14Z	ITGAE	SNP	Silent	17	3620003	C	T	29	50
BRCA	TCGA-E2-A14Z	TP53	SNP	Missense_Mutation	17	7577094	G	A	39	66
BRCA	TCGA-E2-A14Z	ILF3	SNP	Missense_Mutation	19	10781755	C	G	21	75
BRCA	TCGA-E2-A14Z	CIRBP	SNP	Missense_Mutation	19	1272339	G	A	38	43
BRCA	TCGA-E2-A14Z	ZNF780B	SNP	Missense_Mutation	19	40541078	C	T	22	71
BRCA	TCGA-E2-A14Z	MAP3K10	SNP	Silent	19	40704346	C	T	31	49
BRCA	TCGA-E2-A14Z	PSG6	SNP	Missense_Mutation	19	43411997	G	T	43	51
BRCA	TCGA-E2-A14Z	MED25	SNP	Missense_Mutation	19	50322461	C	G	29	76
BRCA	TCGA-E2-A14Z	CD33	SNP	Splice_site	19	51738413	G	T	41	50
BRCA	TCGA-E2-A14Z	TGFBRAP1	SNP	Missense_Mutation	2	105897089	G	A	45	100
BRCA	TCGA-E2-A14Z	NCOA5	SNP	Silent	20	44692114	G	A	45	59
BRCA	TCGA-E2-A14Z	PRPF6	SNP	Silent	20	62658961	G	A	33	59
BRCA	TCGA-E2-A14Z	CCT8L2	SNP	Silent	22	17072619	G	A	38	45
BRCA	TCGA-E2-A14Z	IL13RA2	SNP	Silent	23	114244201	A	C	3	51
BRCA	TCGA-E2-A14Z	FRMPD4	SNP	Missense_Mutation	23	12736883	G	T	39	80
BRCA	TCGA-E2-A14Z	CSF2RA	SNP	Missense_Mutation	23	1407467	T	A	58	51
BRCA	TCGA-E2-A14Z	SPANXD	SNP	Silent	23	140786506	G	A	40	51
BRCA	TCGA-E2-A14Z	CCNB3	INS	Frame_Shift_Ins	23	50089661	-	A	29	68
BRCA	TCGA-E2-A14Z	RASA2	SNP	Nonsense_Mutation	3	141277776	G	T	33	89
BRCA	TCGA-E2-A14Z	SLC4A7	SNP	Splice_Site	3	27418337	C	T	20	87
BRCA	TCGA-E2-A14Z	XIRP1	SNP	Missense_Mutation	3	39226889	G	A	41	51
BRCA	TCGA-E2-A14Z	RBM6	SNP	Missense_Mutation	3	50005657	C	A	29	88
BRCA	TCGA-E2-A14Z	ABHD14A-ACY1	SNP	Missense_Mutation	3	52019910	G	C	45	56
BRCA	TCGA-E2-A14Z	IL17RD	SNP	Silent	3	57132384	G	A	33	62
BRCA	TCGA-E2-A14Z	GUCY1B3	SNP	Silent	4	156721140	C	T	17	59
BRCA	TCGA-E2-A14Z	TMCO6	SNP	Missense_Mutation	5	140022500	C	T	32	64
BRCA	TCGA-E2-A14Z	PCDHB14	SNP	Missense_Mutation	5	140604455	G	A	40	47
BRCA	TCGA-E2-A14Z	ATP10B	SNP	Missense_Mutation	5	160059363	C	G	30	71
BRCA	TCGA-E2-A14Z	DDX41	SNP	Missense_Mutation	5	176943429	C	T	31	64
BRCA	TCGA-E2-A14Z	WDR70	SNP	Silent	5	37605229	G	A	37	46
BRCA	TCGA-E2-A14Z	CARD6	SNP	Missense_Mutation	5	40843622	G	C	48	54
BRCA	TCGA-E2-A14Z	ANKRD31	SNP	Missense_Mutation	5	74364415	C	T	32	79
BRCA	TCGA-E2-A14Z	F2RL2	SNP	Missense_Mutation	5	75914384	C	T	32	54
BRCA	TCGA-E2-A14Z	GPR98	SNP	Missense_Mutation	5	90024745	T	G	64	51
BRCA	TCGA-E2-A14Z	SPATA9	SNP	Missense_Mutation	5	95011246	G	A	41	63
BRCA	TCGA-E2-A14Z	GRIK2	SNP	Missense_Mutation	6	102074363	A	C	7	90
BRCA	TCGA-E2-A14Z	MTHFD1L	SNP	Missense_Mutation	6	151334924	G	A	47	100
BRCA	TCGA-E2-A14Z	SLC22A3	SNP	Silent	6	160858113	G	A	39	17
BRCA	TCGA-E2-A14Z	MSH5	SNP	Missense_Mutation	6	31727737	G	A	37	78
BRCA	TCGA-E2-A14Z	GSTA4	SNP	Nonsense_Mutation	6	52849324	G	A	46	58
BRCA	TCGA-E2-A14Z	EPHA7	SNP	Missense_Mutation	6	94068126	C	A	17	100
BRCA	TCGA-E2-A14Z	MPP6	SNP	Silent	7	24718895	T	C	52	56
BRCA	TCGA-E2-A14Z	HOXA5	SNP	Missense_Mutation	7	27181585	T	C	52	90
BRCA	TCGA-E2-A14Z	ARFGEF1	SNP	Missense_Mutation	8	68178346	G	A	45	100
BRCA	TCGA-E2-A150	LCE6A	SNP	Silent	1	152816068	C	T	18	48
BRCA	TCGA-E2-A150	CHRNB2	SNP	Missense_Mutation	1	154543672	G	A	39	95
BRCA	TCGA-E2-A150	OR6Y1	SNP	Silent	1	158517488	G	C	34	42
BRCA	TCGA-E2-A150	TMCO4	SNP	Silent	1	20009551	G	A	47	61
BRCA	TCGA-E2-A150	USH2A	SNP	Silent	1	215953312	C	T	21	51
BRCA	TCGA-E2-A150	AHCTF1	SNP	Missense_Mutation	1	247014111	C	A	29	63
BRCA	TCGA-E2-A150	ACOT11	SNP	Missense_Mutation	1	55059698	C	G	23	64
BRCA	TCGA-E2-A150	SLC35D1	SNP	Missense_Mutation	1	67507959	G	C	43	96
BRCA	TCGA-E2-A150	SLC44A5	SNP	Missense_Mutation	1	75708648	G	C	46	66
BRCA	TCGA-E2-A150	USP33	SNP	Missense_Mutation	1	78194177	T	A	52	62
BRCA	TCGA-E2-A150	C10orf47	DEL	Frame_Shift_Del	10	11908656	CTCTG	-	24	64
BRCA	TCGA-E2-A150	ZEB1	SNP	Silent	10	31810768	G	A	37	47
BRCA	TCGA-E2-A150	PCDH15	SNP	Missense_Mutation	10	55944938	G	A	36	67
BRCA	TCGA-E2-A150	ZNF365	SNP	Missense_Mutation	10	64425930	T	C	56	50
BRCA	TCGA-E2-A150	SFMBT2	SNP	Missense_Mutation	10	7244480	T	G	64	60
BRCA	TCGA-E2-A150	BCAT1	SNP	Missense_Mutation	12	24970952	A	G	6	50
BRCA	TCGA-E2-A150	DNAH3	SNP	Missense_Mutation	16	20955961	G	T	33	64
BRCA	TCGA-E2-A150	DNAH9	SNP	Nonsense_Mutation	17	11522985	G	T	41	81
BRCA	TCGA-E2-A150	SCPEP1	SNP	Missense_Mutation	17	55058560	T	A	62	66
BRCA	TCGA-E2-A150	TP53	SNP	Nonsense_Mutation	17	7578402	G	T	42	53
BRCA	TCGA-E2-A150	SETBP1	SNP	Silent	18	42643576	C	G	22	72
BRCA	TCGA-E2-A150	CLUL1	SNP	Missense_Mutation	18	618062	C	T	25	64
BRCA	TCGA-E2-A150	NCCRP1	SNP	Nonsense_Mutation	19	39690990	G	T	37	74
BRCA	TCGA-E2-A150	PSMC4	SNP	Missense_Mutation	19	40480708	G	A	42	94
BRCA	TCGA-E2-A150	LIG1	SNP	Missense_Mutation	19	48620916	G	C	33	66
BRCA	TCGA-E2-A150	ACVR1C	SNP	Missense_Mutation	2	158406760	C	A	32	100
BRCA	TCGA-E2-A150	CPS1	SNP	Missense_Mutation	2	211471611	T	G	52	89
BRCA	TCGA-E2-A150	ERBB4	SNP	Missense_Mutation	2	212543900	C	T	30	66
BRCA	TCGA-E2-A150	SPEG	SNP	Silent	2	220354392	A	C	7	56
BRCA	TCGA-E2-A150	KDM3A	SNP	Missense_Mutation	2	86705821	T	G	54	77
BRCA	TCGA-E2-A150	ZNF217	SNP	Silent	20	52192498	A	G	4	47
BRCA	TCGA-E2-A150	BCAS1	SNP	Nonsense_Mutation	20	52570137	G	T	45	67
BRCA	TCGA-E2-A150	LOC100288017	SNP	Silent	21	14568634	G	A	38	51
BRCA	TCGA-E2-A150	MORF4L2	SNP	Silent	23	102931122	C	A	21	53
BRCA	TCGA-E2-A150	CACNA1F	SNP	Missense_Mutation	23	49065116	C	T	27	53
BRCA	TCGA-E2-A150	COPG1	SNP	Splice_Site	3	128996136	G	C	35	96
BRCA	TCGA-E2-A150	SULT1E1	SNP	Missense_Mutation	4	70715248	C	T	26	63
BRCA	TCGA-E2-A150	LOC100288554	SNP	Missense_Mutation	4	9423986	C	T	22	49
BRCA	TCGA-E2-A150	HAVCR1	SNP	Missense_Mutation	5	156464344	G	A	40	32
BRCA	TCGA-E2-A150	ITGA1	SNP	Missense_Mutation	5	52216261	G	A	37	50
BRCA	TCGA-E2-A150	PPP1R10	SNP	Missense_Mutation	6	30571347	C	T	20	93
BRCA	TCGA-E2-A150	EYS	SNP	Missense_Mutation	6	65301142	T	G	64	65
BRCA	TCGA-E2-A150	RWDD2A	SNP	Missense_Mutation	6	83905471	T	A	57	89
BRCA	TCGA-E2-A150	BRAF	SNP	Missense_Mutation	7	140476796	A	G	5	93
BRCA	TCGA-E2-A150	RB1CC1	SNP	Nonsense_Mutation	8	53569190	T	A	62	89
BRCA	TCGA-E2-A150	CACNA1B	SNP	Missense_Mutation	9	140938304	G	A	39	63
BRCA	TCGA-E2-A152	GPSM2	SNP	Missense_Mutation	1	109445764	G	A	34	100
BRCA	TCGA-E2-A152	RBM8A	SNP	Missense_Mutation	1	145508273	G	T	41	90
BRCA	TCGA-E2-A152	OTUD7B	SNP	Missense_Mutation	1	149937782	C	T	20	62
BRCA	TCGA-E2-A152	SPRR2F	SNP	Nonsense_Mutation	1	153085068	G	A	45	69
BRCA	TCGA-E2-A152	THBS3	SNP	Missense_Mutation	1	155165801	G	C	41	90
BRCA	TCGA-E2-A152	GPATCH4	SNP	Missense_Mutation	1	156567909	C	A	30	69
BRCA	TCGA-E2-A152	MNDA	SNP	Missense_Mutation	1	158812198	G	C	33	49
BRCA	TCGA-E2-A152	SZRD1	SNP	Missense_Mutation	1	16719813	G	C	33	60
BRCA	TCGA-E2-A152	PAPPA2	SNP	Missense_Mutation	1	176564678	C	A	18	61
BRCA	TCGA-E2-A152	FAM58B	SNP	Silent	1	200182787	C	T	30	54
BRCA	TCGA-E2-A152	CD55	SNP	Missense_Mutation	1	207498997	G	A	37	15
BRCA	TCGA-E2-A152	EIF4G3	SNP	Missense_Mutation	1	21175934	C	T	29	99
BRCA	TCGA-E2-A152	PGBD5	SNP	Missense_Mutation	1	230503782	G	C	41	52
BRCA	TCGA-E2-A152	OR2T34	SNP	Missense_Mutation	1	248737415	G	T	43	59
BRCA	TCGA-E2-A152	PTPRU	SNP	Missense_Mutation	1	29587268	G	A	45	98
BRCA	TCGA-E2-A152	CA6	SNP	Missense_Mutation	1	9022689	C	T	32	61
BRCA	TCGA-E2-A152	SNX7	SNP	Nonsense_Mutation	1	99150448	C	G	29	89
BRCA	TCGA-E2-A152	WDR96	SNP	Splice_Site	10	105965792	C	G	32	49
BRCA	TCGA-E2-A152	FAM45A	SNP	Missense_Mutation	10	120863682	C	G	29	67
BRCA	TCGA-E2-A152	FANK1	SNP	Missense_Mutation	10	127668745	C	T	29	59
BRCA	TCGA-E2-A152	TTC18	SNP	Nonsense_Mutation	10	75034278	A	C	8	51
BRCA	TCGA-E2-A152	TEAD1	SNP	Nonsense_Mutation	11	12785961	C	G	29	100
BRCA	TCGA-E2-A152	SLC17A6	SNP	Missense_Mutation	11	22391723	G	A	45	100
BRCA	TCGA-E2-A152	OR56A5	SNP	Missense_Mutation	11	5989304	C	T	29	52
BRCA	TCGA-E2-A152	OR2AG1	SNP	Missense_Mutation	11	6807135	C	G	32	53
BRCA	TCGA-E2-A152	LRRC43	SNP	Silent	12	122685099	G	A	46	49
BRCA	TCGA-E2-A152	CCNT1	SNP	Silent	12	49086993	G	C	45	53
BRCA	TCGA-E2-A152	AQP5	SNP	Missense_Mutation	12	50355892	C	G	31	69
BRCA	TCGA-E2-A152	FAM186A	SNP	Silent	12	50747708	C	T	32	63
BRCA	TCGA-E2-A152	DGKA	SNP	Missense_Mutation	12	56335341	A	G	2	87
BRCA	TCGA-E2-A152	NFATC4	SNP	Missense_Mutation	14	24836334	C	G	32	50
BRCA	TCGA-E2-A152	SDR39U1	SNP	Missense_Mutation	14	24909407	C	T	31	51
BRCA	TCGA-E2-A152	EML5	SNP	Missense_Mutation	14	89091348	C	T	32	96
BRCA	TCGA-E2-A152	GOLGA8G	SNP	Missense_Mutation	15	28769180	C	T	30	64
BRCA	TCGA-E2-A152	UNC13C	SNP	Nonsense_Mutation	15	54793090	C	T	29	98
BRCA	TCGA-E2-A152	ZNF609	SNP	Missense_Mutation	15	64792007	A	G	4	56
BRCA	TCGA-E2-A152	SMAD3	SNP	Missense_Mutation	15	67457304	G	A	37	97
BRCA	TCGA-E2-A152	CHRNB4	SNP	Missense_Mutation	15	78921439	G	A	33	64
BRCA	TCGA-E2-A152	CCDC154	SNP	Missense_Mutation	16	1488633	C	T	31	64
BRCA	TCGA-E2-A152	TESSP1	DEL	In_Frame_Del	16	2848500	GGCGCTGCTGCT	-	43	53
BRCA	TCGA-E2-A152	C16orf96	SNP	Silent	16	4638311	C	G	29	41
BRCA	TCGA-E2-A152	SF3B3	SNP	Missense_Mutation	16	70569223	C	T	29	98
BRCA	TCGA-E2-A152	ZNF469	SNP	Nonsense_Mutation	16	88504833	C	G	29	52
BRCA	TCGA-E2-A152	SNAI3	SNP	Silent	16	88747605	G	A	45	57
BRCA	TCGA-E2-A152	KRTAP4-8	SNP	Missense_Mutation	17	39254032	G	T	43	58
BRCA	TCGA-E2-A152	PPM1E	SNP	Nonsense_Mutation	17	57043169	C	G	29	100
BRCA	TCGA-E2-A152	CHRNB1	SNP	Silent	17	7359155	C	A	31	49
BRCA	TCGA-E2-A152	TP53	SNP	Missense_Mutation	17	7578536	T	C	63	89
BRCA	TCGA-E2-A152	SMAD2	SNP	Missense_Mutation	18	45372102	A	C	1	94
BRCA	TCGA-E2-A152	DCC	SNP	Missense_Mutation	18	51053085	G	A	45	89
BRCA	TCGA-E2-A152	LPPR2	SNP	Silent	19	11473233	C	G	29	44
BRCA	TCGA-E2-A152	EPOR	SNP	Missense_Mutation	19	11488778	G	A	45	68
BRCA	TCGA-E2-A152	MAST1	SNP	Missense_Mutation	19	12976890	C	T	31	94
BRCA	TCGA-E2-A152	FBL	SNP	Missense_Mutation	19	40328380	C	T	31	96
BRCA	TCGA-E2-A152	LTBP4	SNP	Missense_Mutation	19	41117097	G	T	37	61
BRCA	TCGA-E2-A152	CCDC114	SNP	Missense_Mutation	19	48800800	C	T	23	51
BRCA	TCGA-E2-A152	C19orf76	SNP	Missense_Mutation	19	50193365	G	A	37	42
BRCA	TCGA-E2-A152	AP2A1	SNP	Silent	19	50302177	C	T	31	49
BRCA	TCGA-E2-A152	ZNF480	SNP	Nonsense_Mutation	19	52825581	C	T	19	44
BRCA	TCGA-E2-A152	NLRP2	SNP	Splice_Site	19	55493529	G	C	33	50
BRCA	TCGA-E2-A152	ZSCAN5A	SNP	Missense_Mutation	19	56735124	C	G	32	38
BRCA	TCGA-E2-A152	TAF1B	SNP	Missense_Mutation	2	10050972	G	A	37	87
BRCA	TCGA-E2-A152	IL37	SNP	Missense_Mutation	2	113676141	G	C	41	56
BRCA	TCGA-E2-A152	THSD7B	SNP	Missense_Mutation	2	137814238	G	C	33	65
BRCA	TCGA-E2-A152	RIF1	SNP	Missense_Mutation	2	152322549	C	T	32	97
BRCA	TCGA-E2-A152	C2orf83	SNP	Silent	2	228476365	A	G	10	62
BRCA	TCGA-E2-A152	TACR1	SNP	Silent	2	75280858	C	A	29	55
BRCA	TCGA-E2-A152	SPINT3	SNP	Nonsense_Mutation	20	44141314	C	A	29	43
BRCA	TCGA-E2-A152	TMEM189-UBE2V1	SNP	Nonsense_Mutation	20	48699337	G	A	45	100
BRCA	TCGA-E2-A152	ZBTB46	SNP	Missense_Mutation	20	62421337	C	G	32	62
BRCA	TCGA-E2-A152	ZBTB46	SNP	Missense_Mutation	20	62421476	G	T	33	71
BRCA	TCGA-E2-A152	VSIG1	SNP	Silent	23	107301404	C	T	30	46
BRCA	TCGA-E2-A152	GABRQ	SNP	Missense_Mutation	23	151808900	G	A	37	78
BRCA	TCGA-E2-A152	P2RY4	SNP	Silent	23	69478551	G	C	45	53
BRCA	TCGA-E2-A152	KIAA2022	SNP	Missense_Mutation	23	73962903	C	G	29	97
BRCA	TCGA-E2-A152	ATP7A	SNP	Missense_Mutation	23	77289220	G	A	33	76
BRCA	TCGA-E2-A152	HMGN5	SNP	Nonsense_Mutation	23	80371738	C	A	29	57
BRCA	TCGA-E2-A152	PLA1A	SNP	Silent	3	119327722	A	T	11	31
BRCA	TCGA-E2-A152	MYLK	SNP	Missense_Mutation	3	123419644	C	G	30	72
BRCA	TCGA-E2-A152	TSC22D2	SNP	Missense_Mutation	3	150127372	G	C	41	96
BRCA	TCGA-E2-A152	PIK3CA	SNP	Silent	3	178941973	C	T	29	60
BRCA	TCGA-E2-A152	MAP4	SNP	Nonsense_Mutation	3	47951254	C	A	29	65
BRCA	TCGA-E2-A152	LOC100289156	SNP	Missense_Mutation	3	49459189	C	G	32	48
BRCA	TCGA-E2-A152	CDHR4	SNP	Missense_Mutation	3	49831147	G	A	45	52
BRCA	TCGA-E2-A152	NSUN3	SNP	Silent	3	93783283	G	C	45	80
BRCA	TCGA-E2-A152	MANBA	SNP	Missense_Mutation	4	103590198	C	G	24	84
BRCA	TCGA-E2-A152	KIAA1109	SNP	Missense_Mutation	4	123230553	G	T	45	88
BRCA	TCGA-E2-A152	BOD1L1	SNP	Missense_Mutation	4	13579099	C	G	32	70
BRCA	TCGA-E2-A152	PCDH18	SNP	Missense_Mutation	4	138451370	C	T	29	100
BRCA	TCGA-E2-A152	GALNTL6	DEL	In_Frame_Del	4	173961139	AGA	-	11	90
BRCA	TCGA-E2-A152	CCDC158	SNP	Missense_Mutation	4	77304840	G	C	36	51
BRCA	TCGA-E2-A152	SHROOM3	SNP	Missense_Mutation	4	77476816	G	A	45	90
BRCA	TCGA-E2-A152	SHROOM3	SNP	Missense_Mutation	4	77676338	C	T	19	36
BRCA	TCGA-E2-A152	SPARCL1	SNP	Nonsense_Mutation	4	88415072	G	A	46	76
BRCA	TCGA-E2-A152	PCDHGA3	SNP	Missense_Mutation	5	140724883	G	T	41	100
BRCA	TCGA-E2-A152	PPARGC1B	SNP	Missense_Mutation	5	149206414	C	T	31	43
BRCA	TCGA-E2-A152	UBTD2	SNP	Missense_Mutation	5	171639034	G	A	37	98
BRCA	TCGA-E2-A152	TARS	SNP	Missense_Mutation	5	33459816	G	A	33	100
BRCA	TCGA-E2-A152	RICTOR	SNP	Silent	5	38944601	G	C	45	45
BRCA	TCGA-E2-A152	ITGA2	SNP	Missense_Mutation	5	52366060	G	C	33	54
BRCA	TCGA-E2-A152	TPPP	SNP	Missense_Mutation	5	666230	G	A	33	94
BRCA	TCGA-E2-A152	CDK19	SNP	Missense_Mutation	6	110944522	C	A	18	99
BRCA	TCGA-E2-A152	HIST1H2BC	SNP	Nonsense_Mutation	6	26123904	C	A	31	100
BRCA	TCGA-E2-A152	HIST1H2AD	SNP	Missense_Mutation	6	26199108	C	G	29	93
BRCA	TCGA-E2-A152	HIST1H4I	SNP	Silent	6	27107360	C	G	29	51
BRCA	TCGA-E2-A152	RIPK1	SNP	Missense_Mutation	6	3081330	G	A	45	99
BRCA	TCGA-E2-A152	EYS	SNP	Missense_Mutation	6	65531584	G	A	45	50
BRCA	TCGA-E2-A152	COL12A1	SNP	Silent	6	75814970	G	A	46	52
BRCA	TCGA-E2-A152	COL12A1	SNP	Missense_Mutation	6	75892984	C	G	32	67
BRCA	TCGA-E2-A152	LOC100289653	SNP	Missense_Mutation	6	87607258	G	C	33	54
BRCA	TCGA-E2-A152	MUC17	SNP	Missense_Mutation	7	100681335	C	T	29	63
BRCA	TCGA-E2-A152	MUC17	SNP	Silent	7	100683508	C	T	23	49
BRCA	TCGA-E2-A152	TSGA13	SNP	Missense_Mutation	7	130364154	G	C	45	57
BRCA	TCGA-E2-A152	AGBL3	SNP	Missense_Mutation	7	134672706	G	A	41	72
BRCA	TCGA-E2-A152	NUP205	SNP	Missense_Mutation	7	135272700	C	G	32	100
BRCA	TCGA-E2-A152	PIP	SNP	Missense_Mutation	7	142836690	C	G	29	40
BRCA	TCGA-E2-A152	ZNF786	SNP	Missense_Mutation	7	148767652	C	T	21	89
BRCA	TCGA-E2-A152	PLEKHA8	SNP	Silent	7	30088947	C	G	32	47
BRCA	TCGA-E2-A152	POU6F2	SNP	Silent	7	39125579	G	A	46	74
BRCA	TCGA-E2-A152	LIMK1	SNP	Missense_Mutation	7	73511431	C	T	21	92
BRCA	TCGA-E2-A152	CSMD1	SNP	Silent	8	3057296	G	A	33	60
BRCA	TCGA-E2-A152	GRIN3A	SNP	Silent	9	104499593	G	A	37	53
BRCA	TCGA-E2-A152	ZNF462	SNP	Silent	9	109689136	G	A	45	84
BRCA	TCGA-E2-A152	SARDH	SNP	Missense_Mutation	9	136595296	C	T	25	96
BRCA	TCGA-E2-A152	TPRN	SNP	Silent	9	140093982	G	T	37	42
BRCA	TCGA-E2-A152	FREM1	SNP	Missense_Mutation	9	14851512	C	G	30	100
BRCA	TCGA-E2-A152	LOC642406	SNP	Silent	9	40582302	G	A	45	62
BRCA	TCGA-E2-A152	FAM75D1	SNP	Missense_Mutation	9	84607526	G	A	40	35
BRCA	TCGA-E2-A152	BICD2	SNP	Silent	9	95482669	G	A	37	39
BRCA	TCGA-E2-A153	SYCP1	SNP	Missense_Mutation	1	115454161	C	T	29	51
BRCA	TCGA-E2-A153	OPRD1	SNP	Missense_Mutation	1	29189416	C	T	31	91
BRCA	TCGA-E2-A153	TLL2	SNP	Missense_Mutation	10	98129947	C	T	23	81
BRCA	TCGA-E2-A153	CAT	SNP	Missense_Mutation	11	34492955	C	T	27	59
BRCA	TCGA-E2-A153	C12orf40	SNP	Missense_Mutation	12	40044140	T	G	52	57
BRCA	TCGA-E2-A153	TRMT5	SNP	Nonsense_Mutation	14	61444282	G	A	39	58
BRCA	TCGA-E2-A153	MAPKBP1	SNP	Silent	15	42115928	C	T	30	55
BRCA	TCGA-E2-A153	CBFB	DEL	Frame_Shift_Del	16	67070600	GA	-	41	93
BRCA	TCGA-E2-A153	RLTPR	SNP	Silent	16	67685827	C	T	17	48
BRCA	TCGA-E2-A153	POTEF	SNP	Missense_Mutation	2	130832185	G	A	38	53
BRCA	TCGA-E2-A153	ZNF41	SNP	Missense_Mutation	23	47326822	C	A	26	58
BRCA	TCGA-E2-A153	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-E2-A153	ADAMTS9	SNP	Missense_Mutation	3	64666931	G	A	38	67
BRCA	TCGA-E2-A153	EPHA5	SNP	Missense_Mutation	4	66201815	C	T	19	100
BRCA	TCGA-E2-A153	CCDC112	SNP	Missense_Mutation	5	114620509	G	A	40	64
BRCA	TCGA-E2-A153	GABRB2	SNP	Missense_Mutation	5	160753392	C	A	31	67
BRCA	TCGA-E2-A153	MTMR12	SNP	Silent	5	32233993	G	C	39	51
BRCA	TCGA-E2-A153	MUT	SNP	Missense_Mutation	6	49416584	T	C	57	50
BRCA	TCGA-E2-A153	UBE3D	SNP	Missense_Mutation	6	83667047	C	T	19	35
BRCA	TCGA-E2-A153	KCNQ3	SNP	Missense_Mutation	8	133141532	T	C	58	66
BRCA	TCGA-E2-A153	ENSG00000237029	SNP	Missense_Mutation	8	86556497	G	A	39	48
BRCA	TCGA-E2-A153	DBH	SNP	Missense_Mutation	9	136508616	G	A	40	44
BRCA	TCGA-E2-A153	CACNA1B	SNP	Silent	9	140952286	G	A	38	12
BRCA	TCGA-E2-A154	PGLYRP3	SNP	Missense_Mutation	1	153270481	C	A	22	60
BRCA	TCGA-E2-A154	PRRX1	SNP	Missense_Mutation	1	170695377	G	A	37	95
BRCA	TCGA-E2-A154	PHYHIPL	DEL	In_Frame_Del	10	60994219	AACAAGAAAGAG	-	5	92
BRCA	TCGA-E2-A154	DUPD1	SNP	Nonsense_Mutation	10	76818229	G	T	45	53
BRCA	TCGA-E2-A154	SLIT1	SNP	Missense_Mutation	10	98816176	G	T	41	77
BRCA	TCGA-E2-A154	IFITM3	SNP	Missense_Mutation	11	320790	G	T	33	52
BRCA	TCGA-E2-A154	OR5T2	SNP	Missense_Mutation	11	56000198	G	A	34	85
BRCA	TCGA-E2-A154	OR5AR1	SNP	Silent	11	56431680	C	T	29	60
BRCA	TCGA-E2-A154	IRAK3	SNP	Missense_Mutation	12	66641568	T	G	52	73
BRCA	TCGA-E2-A154	CLYBL	SNP	Missense_Mutation	13	100518535	C	T	23	64
BRCA	TCGA-E2-A154	FBXL3	SNP	Missense_Mutation	13	77595895	C	G	17	51
BRCA	TCGA-E2-A154	CHD8	SNP	Silent	14	21859709	C	A	21	60
BRCA	TCGA-E2-A154	CMTM5	SNP	Missense_Mutation	14	23848056	G	T	46	59
BRCA	TCGA-E2-A154	ENSG00000185864	SNP	Nonsense_Mutation	16	21854855	G	A	37	46
BRCA	TCGA-E2-A154	MEGF8	SNP	Silent	19	42862378	G	A	47	52
BRCA	TCGA-E2-A154	NOVA2	SNP	Missense_Mutation	19	46457123	C	T	31	95
BRCA	TCGA-E2-A154	CATSPERD	SNP	Missense_Mutation	19	5744496	C	T	27	52
BRCA	TCGA-E2-A154	SLC40A1	SNP	Missense_Mutation	2	190428591	A	C	7	81
BRCA	TCGA-E2-A154	ALS2CR11	DEL	Frame_Shift_Del	2	202358909	T	-	56	50
BRCA	TCGA-E2-A154	E2F1	SNP	Missense_Mutation	20	32267640	G	A	38	63
BRCA	TCGA-E2-A154	RUNX1	DEL	Frame_Shift_Del	21	36206729	AGGGTTAA	-	11	60
BRCA	TCGA-E2-A154	RNF113A	SNP	Missense_Mutation	23	119005097	C	A	32	53
BRCA	TCGA-E2-A154	OCRL	SNP	Missense_Mutation	23	128692644	G	T	45	73
BRCA	TCGA-E2-A154	DMD	SNP	Missense_Mutation	23	31152232	G	T	41	55
BRCA	TCGA-E2-A154	UBA1	SNP	Missense_Mutation	23	47065655	A	T	8	84
BRCA	TCGA-E2-A154	CCNB3	SNP	Missense_Mutation	23	50037884	C	G	21	59
BRCA	TCGA-E2-A154	SMC1A	SNP	Missense_Mutation	23	53439174	C	T	23	80
BRCA	TCGA-E2-A154	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-E2-A154	SLMAP	SNP	Missense_Mutation	3	57875847	A	G	16	42
BRCA	TCGA-E2-A154	PPID	SNP	Missense_Mutation	4	159644428	A	C	10	51
BRCA	TCGA-E2-A154	PCDHGA7	SNP	Silent	5	140764680	G	A	38	35
BRCA	TCGA-E2-A154	ERVFRD-1	SNP	Missense_Mutation	6	11103979	G	T	40	44
BRCA	TCGA-E2-A154	C2	SNP	Silent	6	31896624	G	A	43	52
BRCA	TCGA-E2-A154	CGA	SNP	Silent	6	87796031	C	T	31	49
BRCA	TCGA-E2-A154	SLC12A9	SNP	Silent	7	100456724	C	T	31	29
BRCA	TCGA-E2-A154	VPS13B	SNP	Missense_Mutation	8	100883111	G	A	48	95
BRCA	TCGA-E2-A154	KLHL38	SNP	Missense_Mutation	8	124664638	C	T	25	59
BRCA	TCGA-E2-A154	VPS28	SNP	Missense_Mutation	8	145649475	C	T	27	74
BRCA	TCGA-E2-A154	RP1	SNP	Missense_Mutation	8	55533917	C	T	23	76
BRCA	TCGA-E2-A154	C9orf9	SNP	Silent	9	135763881	G	A	35	50
BRCA	TCGA-E2-A154	PGM5	SNP	Missense_Mutation	9	70993224	G	T	46	64
BRCA	TCGA-E2-A155	OTUD7B	SNP	Missense_Mutation	1	149939428	C	A	26	82
BRCA	TCGA-E2-A155	ARHGEF11	SNP	Missense_Mutation	1	156907126	C	T	27	47
BRCA	TCGA-E2-A155	CD1A	SNP	Nonsense_Mutation	1	158225973	C	T	29	42
BRCA	TCGA-E2-A155	TROVE2	SNP	Missense_Mutation	1	193045697	G	T	46	93
BRCA	TCGA-E2-A155	PLEKHA6	SNP	Missense_Mutation	1	204214761	C	T	30	92
BRCA	TCGA-E2-A155	RYR2	SNP	Missense_Mutation	1	237863760	C	G	18	52
BRCA	TCGA-E2-A155	ZNF684	SNP	Silent	1	41006377	C	T	32	53
BRCA	TCGA-E2-A155	SGIP1	SNP	Missense_Mutation	1	67206375	C	A	30	86
BRCA	TCGA-E2-A155	PHYH	SNP	Silent	10	13325695	G	T	39	55
BRCA	TCGA-E2-A155	GATA3	INS	Frame_Shift_Ins	10	8111501	-	A	41	76
BRCA	TCGA-E2-A155	RBM19	SNP	Missense_Mutation	12	114380175	C	T	23	80
BRCA	TCGA-E2-A155	KIAA0528	SNP	Missense_Mutation	12	22677465	C	T	31	85
BRCA	TCGA-E2-A155	C14orf80	SNP	Silent	14	105965157	G	T	38	20
BRCA	TCGA-E2-A155	OR11G2	SNP	Silent	14	20665593	G	A	42	48
BRCA	TCGA-E2-A155	OR4F6	SNP	Silent	15	102346324	C	T	21	48
BRCA	TCGA-E2-A155	OR4F15	SNP	Missense_Mutation	15	102358597	G	A	45	80
BRCA	TCGA-E2-A155	NPAP1	SNP	Missense_Mutation	15	24921813	G	T	40	51
BRCA	TCGA-E2-A155	TTBK2	SNP	Splice_site	15	43122137	G	A	39	100
BRCA	TCGA-E2-A155	MRPS11	SNP	Silent	15	89020270	G	A	47	59
BRCA	TCGA-E2-A155	ZNF646	SNP	Nonsense_Mutation	16	31092215	C	T	29	64
BRCA	TCGA-E2-A155	ZNF597	SNP	Nonsense_Mutation	16	3486606	C	A	32	51
BRCA	TCGA-E2-A155	WDR90	SNP	Silent	16	708527	G	A	46	53
BRCA	TCGA-E2-A155	PPM1E	SNP	Missense_Mutation	17	57057854	C	T	25	65
BRCA	TCGA-E2-A155	CACNG5	SNP	Missense_Mutation	17	64875098	C	T	27	74
BRCA	TCGA-E2-A155	TP53	SNP	Splice_Site	17	7579591	C	G	20	64
BRCA	TCGA-E2-A155	USP36	SNP	Nonsense_Mutation	17	76831512	G	A	38	73
BRCA	TCGA-E2-A155	DSC2	SNP	Missense_Mutation	18	28654837	A	G	3	81
BRCA	TCGA-E2-A155	KCNG2	SNP	Missense_Mutation	18	77659086	T	C	59	86
BRCA	TCGA-E2-A155	PSG3	SNP	Silent	19	43233453	G	A	37	47
BRCA	TCGA-E2-A155	HIF3A	SNP	Missense_Mutation	19	46825069	C	T	23	73
BRCA	TCGA-E2-A155	FUT5	SNP	Missense_Mutation	19	5866890	C	T	19	63
BRCA	TCGA-E2-A155	SATB2	SNP	Missense_Mutation	2	200137283	C	T	27	82
BRCA	TCGA-E2-A155	ATIC	DEL	Frame_Shift_Del	2	216209567	CT	-	20	52
BRCA	TCGA-E2-A155	GLB1L	SNP	Silent	2	220102662	C	T	21	87
BRCA	TCGA-E2-A155	NLRC4	SNP	Nonsense_Mutation	2	32476278	G	A	45	62
BRCA	TCGA-E2-A155	ZNF217	SNP	Missense_Mutation	20	52193283	A	G	7	42
BRCA	TCGA-E2-A155	SLC5A1	SNP	Silent	22	32479101	G	A	39	29
BRCA	TCGA-E2-A155	CENPI	SNP	Silent	23	100382636	G	A	33	50
BRCA	TCGA-E2-A155	ARHGAP6	SNP	Silent	23	11162146	C	T	19	49
BRCA	TCGA-E2-A155	MTMR8	SNP	Missense_Mutation	23	63488612	C	T	17	53
BRCA	TCGA-E2-A155	RUVBL1	SNP	Silent	3	127800192	G	A	46	51
BRCA	TCGA-E2-A155	ATR	SNP	Missense_Mutation	3	142176483	T	C	52	48
BRCA	TCGA-E2-A155	NAALADL2	SNP	Missense_Mutation	3	175042047	C	G	26	50
BRCA	TCGA-E2-A155	DGKG	SNP	Missense_Mutation	3	185990120	G	C	36	95
BRCA	TCGA-E2-A155	CRYBG3	SNP	Missense_Mutation	3	97614915	C	T	23	70
BRCA	TCGA-E2-A155	MFAP3L	SNP	Missense_Mutation	4	170912804	C	T	18	97
BRCA	TCGA-E2-A155	CRMP1	SNP	Splice_site	4	5837643	G	A	37	95
BRCA	TCGA-E2-A155	MRFAP1L1	SNP	Silent	4	6711321	A	G	7	36
BRCA	TCGA-E2-A155	GIN1	SNP	Missense_Mutation	5	102432359	C	G	32	83
BRCA	TCGA-E2-A155	HDAC3	SNP	Missense_Mutation	5	141005299	G	A	36	100
BRCA	TCGA-E2-A155	CREBRF	SNP	Missense_Mutation	5	172517553	C	G	32	100
BRCA	TCGA-E2-A155	CMYA5	SNP	Missense_Mutation	5	79028598	C	T	29	79
BRCA	TCGA-E2-A155	ENSG00000225705	SNP	Missense_Mutation	7	48886213	G	T	44	51
BRCA	TCGA-E2-A155	AKAP9	DEL	Frame_Shift_Del	7	91603204	T	-	55	35
BRCA	TCGA-E2-A155	LYN	SNP	Missense_Mutation	8	56912024	G	A	47	99
BRCA	TCGA-E2-A155	LOC645969	SNP	Missense_Mutation	9	6278962	T	C	51	72
BRCA	TCGA-E2-A156	CD34	SNP	Missense_Mutation	1	208062812	G	T	48	58
BRCA	TCGA-E2-A156	TCEB3	INS	Frame_Shift_Ins	1	24078169	-	C	46	44
BRCA	TCGA-E2-A156	APLNR	SNP	Missense_Mutation	11	57003857	C	T	19	49
BRCA	TCGA-E2-A156	DAK	SNP	Missense_Mutation	11	61105416	T	A	54	56
BRCA	TCGA-E2-A156	ZNF215	SNP	Nonsense_Mutation	11	6964815	G	T	41	46
BRCA	TCGA-E2-A156	ANO2	SNP	Missense_Mutation	12	5936961	G	A	42	59
BRCA	TCGA-E2-A156	FREM2	SNP	Silent	13	39266455	C	T	31	52
BRCA	TCGA-E2-A156	PEAK1	SNP	Missense_Mutation	15	77406833	G	A	39	57
BRCA	TCGA-E2-A156	CTCF	SNP	Nonsense_Mutation	16	67644796	G	T	41	94
BRCA	TCGA-E2-A156	MAP2K4	DEL	Frame_Shift_Del	17	11984840	CAGTTAAAGTAGGTGAT	-	25	98
BRCA	TCGA-E2-A156	NCOR1	DEL	Frame_Shift_Del	17	16068342	CGATCTACACG	-	31	97
BRCA	TCGA-E2-A156	HDLBP	SNP	Missense_Mutation	2	242202328	G	A	43	89
BRCA	TCGA-E2-A156	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-E2-A156	TRIM71	SNP	Missense_Mutation	3	32933232	G	A	39	99
BRCA	TCGA-E2-A156	ADAM19	SNP	Missense_Mutation	5	156945842	C	G	29	92
BRCA	TCGA-E2-A156	RGS14	SNP	Silent	5	176795135	G	T	40	51
BRCA	TCGA-E2-A156	MAP3K1	DEL	Frame_Shift_Del	5	56168483	G	-	33	95
BRCA	TCGA-E2-A156	BCLAF1	SNP	Nonsense_Mutation	6	136599544	G	A	40	73
BRCA	TCGA-E2-A156	DSP	SNP	Missense_Mutation	6	7583485	G	T	43	99
BRCA	TCGA-E2-A156	HSF1	SNP	Missense_Mutation	8	145535048	C	G	30	56
BRCA	TCGA-E2-A156	CEP78	SNP	Missense_Mutation	9	80856675	T	C	55	84
BRCA	TCGA-E2-A158	MASP2	SNP	Missense_Mutation	1	11107016	G	A	39	57
BRCA	TCGA-E2-A158	ADAM30	SNP	Missense_Mutation	1	120438621	C	A	21	50
BRCA	TCGA-E2-A158	CHD1L	SNP	Missense_Mutation	1	146759365	G	C	37	89
BRCA	TCGA-E2-A158	LOC100132108	SNP	Silent	1	155815738	G	A	35	76
BRCA	TCGA-E2-A158	IQGAP3	SNP	Missense_Mutation	1	156498803	C	G	24	58
BRCA	TCGA-E2-A158	VANGL2	SNP	Missense_Mutation	1	160388826	C	T	19	91
BRCA	TCGA-E2-A158	POU2F1	SNP	Missense_Mutation	1	167367365	T	G	56	50
BRCA	TCGA-E2-A158	TDRD5	SNP	Splice_site	1	179609514	G	A	44	52
BRCA	TCGA-E2-A158	ASPM	SNP	Missense_Mutation	1	197073197	C	A	25	51
BRCA	TCGA-E2-A158	PTPN7	SNP	Missense_Mutation	1	202119541	C	G	26	96
BRCA	TCGA-E2-A158	LRRN2	SNP	Missense_Mutation	1	204588156	C	T	23	68
BRCA	TCGA-E2-A158	CSMD2	SNP	Missense_Mutation	1	34254306	C	A	24	93
BRCA	TCGA-E2-A158	IPO13	SNP	Silent	1	44422562	T	C	51	51
BRCA	TCGA-E2-A158	PTPRE	SNP	Missense_Mutation	10	129875909	G	A	37	81
BRCA	TCGA-E2-A158	SLC29A3	SNP	Missense_Mutation	10	73111428	T	C	64	88
BRCA	TCGA-E2-A158	PLCE1	SNP	Missense_Mutation	10	96030357	A	C	5	91
BRCA	TCGA-E2-A158	ARFGAP2	SNP	Silent	11	47193042	T	G	57	41
BRCA	TCGA-E2-A158	LETMD1	SNP	Missense_Mutation	12	51450235	G	A	42	88
BRCA	TCGA-E2-A158	NACA	SNP	Missense_Mutation	12	57110900	G	T	41	48
BRCA	TCGA-E2-A158	MDM2	SNP	Missense_Mutation	12	69202261	G	C	44	69
BRCA	TCGA-E2-A158	ACSM4	SNP	Missense_Mutation	12	7475135	G	T	36	56
BRCA	TCGA-E2-A158	C12orf55	SNP	Missense_Mutation	12	97045441	C	A	20	50
BRCA	TCGA-E2-A158	MYCBP2	SNP	Missense_Mutation	13	77644815	A	G	8	88
BRCA	TCGA-E2-A158	UGGT2	SNP	Silent	13	96547535	A	G	4	52
BRCA	TCGA-E2-A158	FURIN	SNP	Silent	15	91423399	G	A	47	69
BRCA	TCGA-E2-A158	NOMO3	SNP	Missense_Mutation	16	16349580	G	A	40	63
BRCA	TCGA-E2-A158	AKTIP	SNP	Missense_Mutation	16	53534164	G	C	35	97
BRCA	TCGA-E2-A158	HLF	SNP	Missense_Mutation	17	53398125	C	G	31	67
BRCA	TCGA-E2-A158	TP53	SNP	Missense_Mutation	17	7578265	A	G	12	68
BRCA	TCGA-E2-A158	ASXL3	SNP	Missense_Mutation	18	31320313	T	A	49	88
BRCA	TCGA-E2-A158	LOXHD1	SNP	Missense_Mutation	18	44157812	C	T	31	100
BRCA	TCGA-E2-A158	SERPINB3	SNP	Missense_Mutation	18	61325830	G	C	44	86
BRCA	TCGA-E2-A158	SAMD1	SNP	Silent	19	14199331	C	T	17	52
BRCA	TCGA-E2-A158	OR10H2	SNP	Missense_Mutation	19	15838966	C	T	19	64
BRCA	TCGA-E2-A158	SLC5A5	SNP	Missense_Mutation	19	17985316	G	T	42	71
BRCA	TCGA-E2-A158	ZNF100	SNP	Missense_Mutation	19	21909523	G	C	48	61
BRCA	TCGA-E2-A158	ZNF181	SNP	Missense_Mutation	19	35232115	G	T	47	55
BRCA	TCGA-E2-A158	HRC	SNP	Missense_Mutation	19	49658427	G	T	43	60
BRCA	TCGA-E2-A158	FLT3LG	DEL	Frame_Shift_Del	19	49978980	GGGACTCAGT	-	39	36
BRCA	TCGA-E2-A158	PEG3	SNP	Missense_Mutation	19	57326308	A	C	6	83
BRCA	TCGA-E2-A158	GPD2	SNP	Missense_Mutation	2	157407221	A	G	3	80
BRCA	TCGA-E2-A158	CHRNA1	SNP	Silent	2	175613362	G	A	37	30
BRCA	TCGA-E2-A158	TTN	SNP	Missense_Mutation	2	179585241	T	G	52	50
BRCA	TCGA-E2-A158	TTN	SNP	Missense_Mutation	2	179592849	A	C	3	54
BRCA	TCGA-E2-A158	COL5A2	SNP	Missense_Mutation	2	189928732	C	G	24	94
BRCA	TCGA-E2-A158	STAT4	SNP	Missense_Mutation	2	191900935	C	T	21	100
BRCA	TCGA-E2-A158	GPR35	SNP	Missense_Mutation	2	241569563	C	T	26	69
BRCA	TCGA-E2-A158	SPAST	SNP	Missense_Mutation	2	32379525	A	G	14	80
BRCA	TCGA-E2-A158	PPM1B	SNP	Missense_Mutation	2	44457678	G	C	34	85
BRCA	TCGA-E2-A158	TMEM18	SNP	Missense_Mutation	2	675561	A	T	7	61
BRCA	TCGA-E2-A158	C2orf78	SNP	Missense_Mutation	2	74042839	G	C	45	53
BRCA	TCGA-E2-A158	SLC4A5	SNP	Missense_Mutation	2	74474219	T	A	58	57
BRCA	TCGA-E2-A158	TRIM43	SNP	Missense_Mutation	2	96259815	G	C	46	72
BRCA	TCGA-E2-A158	CPXM1	SNP	Missense_Mutation	20	2775057	G	A	38	66
BRCA	TCGA-E2-A158	PLAGL2	DEL	In_Frame_Del	20	30785163	GGTCACAGG	-	47	100
BRCA	TCGA-E2-A158	HRH3	SNP	Missense_Mutation	20	60794857	A	T	11	71
BRCA	TCGA-E2-A158	ETS2	SNP	Missense_Mutation	21	40188980	C	T	18	54
BRCA	TCGA-E2-A158	COL18A1	INS	In_Frame_Ins	21	46876470	-	GTCTGC	7	19
BRCA	TCGA-E2-A158	IL2RB	SNP	Splice_Site	22	37540124	C	A	18	63
BRCA	TCGA-E2-A158	IGSF1	SNP	Nonsense_Mutation	23	130408820	C	T	26	73
BRCA	TCGA-E2-A158	PHEX	SNP	Splice_Site	23	22208620	G	A	40	80
BRCA	TCGA-E2-A158	IGBP1	SNP	Missense_Mutation	23	69353826	C	T	23	80
BRCA	TCGA-E2-A158	TBC1D23	SNP	Missense_Mutation	3	100015073	C	G	32	98
BRCA	TCGA-E2-A158	CD86	SNP	Missense_Mutation	3	121828123	C	G	22	35
BRCA	TCGA-E2-A158	KIAA1109	SNP	Missense_Mutation	4	123207765	C	T	17	73
BRCA	TCGA-E2-A158	MAB21L2	SNP	Silent	4	151504781	G	C	47	66
BRCA	TCGA-E2-A158	CLRN2	SNP	Missense_Mutation	4	17528460	A	G	8	50
BRCA	TCGA-E2-A158	SCFD2	SNP	Missense_Mutation	4	53752015	T	A	53	66
BRCA	TCGA-E2-A158	FRAS1	SNP	Missense_Mutation	4	79340212	A	T	4	45
BRCA	TCGA-E2-A158	PCDHGA5	SNP	Missense_Mutation	5	140746002	G	C	46	66
BRCA	TCGA-E2-A158	RNF130	SNP	Silent	5	179440193	C	A	31	43
BRCA	TCGA-E2-A158	ARID1B	SNP	Missense_Mutation	6	157522383	G	A	35	73
BRCA	TCGA-E2-A158	RBM24	SNP	Missense_Mutation	6	17283067	G	C	35	98
BRCA	TCGA-E2-A158	CUL7	SNP	Splice_Site	6	43017144	C	T	18	62
BRCA	TCGA-E2-A158	CNTNAP2	SNP	Nonsense_Mutation	7	146829361	G	T	41	95
BRCA	TCGA-E2-A158	SNX10	SNP	Missense_Mutation	7	26412173	C	G	17	64
BRCA	TCGA-E2-A158	LOC100128031	SNP	Missense_Mutation	7	73245517	C	G	23	20
BRCA	TCGA-E2-A158	EFR3A	SNP	Silent	8	132966110	A	G	1	61
BRCA	TCGA-E2-A158	C9orf84	SNP	Missense_Mutation	9	114464479	C	A	26	67
BRCA	TCGA-E2-A158	B4GALT1	SNP	Missense_Mutation	9	33116073	A	G	15	89
BRCA	TCGA-E2-A159	HIST2H3D	SNP	Missense_Mutation	1	149785205	G	A	37	93
BRCA	TCGA-E2-A159	ECM1	SNP	Silent	1	150484178	C	T	30	61
BRCA	TCGA-E2-A159	HORMAD1	SNP	Missense_Mutation	1	150684035	G	C	43	73
BRCA	TCGA-E2-A159	TCHH	SNP	Silent	1	152083125	G	C	41	49
BRCA	TCGA-E2-A159	TPM3	SNP	Missense_Mutation	1	154163705	T	A	50	92
BRCA	TCGA-E2-A159	TRIM46	SNP	Silent	1	155150660	C	G	28	53
BRCA	TCGA-E2-A159	IQGAP3	SNP	Splice_site	1	156531792	G	C	41	55
BRCA	TCGA-E2-A159	CD1E	SNP	Missense_Mutation	1	158325653	C	G	24	62
BRCA	TCGA-E2-A159	OR10J1	SNP	Silent	1	159409770	G	C	45	51
BRCA	TCGA-E2-A159	ARHGEF19	SNP	Missense_Mutation	1	16525668	G	A	45	65
BRCA	TCGA-E2-A159	UBR4	SNP	Missense_Mutation	1	19407923	C	G	30	95
BRCA	TCGA-E2-A159	LAMB3	SNP	Silent	1	209803110	C	T	23	13
BRCA	TCGA-E2-A159	ARID4B	SNP	Missense_Mutation	1	235345497	C	G	29	98
BRCA	TCGA-E2-A159	OR2G3	SNP	Silent	1	247769442	C	G	29	50
BRCA	TCGA-E2-A159	OR2T35	SNP	Missense_Mutation	1	248801684	C	G	29	48
BRCA	TCGA-E2-A159	PUM1	SNP	Missense_Mutation	1	31437562	G	A	35	100
BRCA	TCGA-E2-A159	ZMYM4	SNP	Missense_Mutation	1	35873661	G	C	45	59
BRCA	TCGA-E2-A159	MACF1	SNP	Silent	1	39797744	G	A	45	45
BRCA	TCGA-E2-A159	MACF1	SNP	Missense_Mutation	1	39798309	G	C	45	49
BRCA	TCGA-E2-A159	AK5	SNP	Missense_Mutation	1	77748056	G	C	45	77
BRCA	TCGA-E2-A159	CUBN	SNP	Missense_Mutation	10	16955917	G	A	39	65
BRCA	TCGA-E2-A159	TUBAL3	SNP	Missense_Mutation	10	5436386	G	T	41	68
BRCA	TCGA-E2-A159	CDHR1	SNP	Missense_Mutation	10	85962805	G	A	41	67
BRCA	TCGA-E2-A159	TNKS2	SNP	Missense_Mutation	10	93572805	G	A	45	100
BRCA	TCGA-E2-A159	NPAT	SNP	Missense_Mutation	11	108031617	T	C	56	73
BRCA	TCGA-E2-A159	NPAT	SNP	Nonsense_Mutation	11	108032049	G	C	45	81
BRCA	TCGA-E2-A159	CCDC84	SNP	Missense_Mutation	11	118885784	C	G	32	91
BRCA	TCGA-E2-A159	ANO9	SNP	Silent	11	419605	C	G	29	40
BRCA	TCGA-E2-A159	ENSG00000231657	SNP	Silent	11	557881	C	T	29	61
BRCA	TCGA-E2-A159	C11orf20	SNP	Missense_Mutation	11	64068205	C	G	19	44
BRCA	TCGA-E2-A159	C11orf20	SNP	Missense_Mutation	11	64072038	G	A	41	50
BRCA	TCGA-E2-A159	RBM14	SNP	Nonsense_Mutation	11	66392812	C	T	29	78
BRCA	TCGA-E2-A159	SPTBN2	SNP	Missense_Mutation	11	66468355	C	T	27	95
BRCA	TCGA-E2-A159	UVRAG	SNP	Missense_Mutation	11	75590926	C	T	30	95
BRCA	TCGA-E2-A159	THRSP	SNP	Missense_Mutation	11	77775298	T	C	54	86
BRCA	TCGA-E2-A159	MLXIP	SNP	Missense_Mutation	12	122516984	G	C	33	61
BRCA	TCGA-E2-A159	SLC15A5	SNP	Missense_Mutation	12	16377519	C	G	25	94
BRCA	TCGA-E2-A159	TMTC1	SNP	Silent	12	29709801	C	T	30	44
BRCA	TCGA-E2-A159	ACVR1B	SNP	Missense_Mutation	12	52377883	G	T	45	100
BRCA	TCGA-E2-A159	ACVR1B	SNP	Missense_Mutation	12	52380701	G	C	33	58
BRCA	TCGA-E2-A159	TARBP2	SNP	Silent	12	53895943	C	T	29	68
BRCA	TCGA-E2-A159	OS9	SNP	Missense_Mutation	12	58112055	G	A	45	70
BRCA	TCGA-E2-A159	PHB2	SNP	Silent	12	7076337	C	T	32	54
BRCA	TCGA-E2-A159	NALCN	SNP	Missense_Mutation	13	102030929	C	A	18	95
BRCA	TCGA-E2-A159	RNF6	SNP	Missense_Mutation	13	26793693	C	T	32	93
BRCA	TCGA-E2-A159	SLC7A1	SNP	Silent	13	30091320	G	A	33	51
BRCA	TCGA-E2-A159	RB1	SNP	Missense_Mutation	13	48955532	T	A	64	70
BRCA	TCGA-E2-A159	RB1	DEL	Frame_Shift_Del	13	48955534	A	-	15	69
BRCA	TCGA-E2-A159	NFKBIA	SNP	Missense_Mutation	14	35873760	C	T	31	91
BRCA	TCGA-E2-A159	IVD	SNP	Nonsense_Mutation	15	40710373	C	T	31	76
BRCA	TCGA-E2-A159	TGM5	SNP	Missense_Mutation	15	43545083	A	G	13	86
BRCA	TCGA-E2-A159	IGDCC3	SNP	Missense_Mutation	15	65628154	C	G	29	79
BRCA	TCGA-E2-A159	MAP2K1	SNP	Missense_Mutation	15	66774131	G	A	41	100
BRCA	TCGA-E2-A159	PKD1	SNP	Silent	16	2140301	G	C	45	61
BRCA	TCGA-E2-A159	RLTPR	SNP	Silent	16	67682005	C	T	31	56
BRCA	TCGA-E2-A159	PRPF8	SNP	Splice_site	17	1554097	C	T	29	57
BRCA	TCGA-E2-A159	GPR179	SNP	Missense_Mutation	17	36482587	C	T	32	58
BRCA	TCGA-E2-A159	CASC3	SNP	Missense_Mutation	17	38296935	G	C	34	66
BRCA	TCGA-E2-A159	OTOP2	SNP	Silent	17	72926762	G	C	45	46
BRCA	TCGA-E2-A159	TP53	SNP	Missense_Mutation	17	7578203	C	T	17	96
BRCA	TCGA-E2-A159	DNAH2	SNP	Missense_Mutation	17	7667478	T	G	56	38
BRCA	TCGA-E2-A159	ZNF681	SNP	Missense_Mutation	19	23926992	C	G	32	60
BRCA	TCGA-E2-A159	EML2	SNP	Missense_Mutation	19	46128000	C	A	22	91
BRCA	TCGA-E2-A159	KLK15	SNP	Missense_Mutation	19	51330233	G	T	44	93
BRCA	TCGA-E2-A159	SIGLEC7	SNP	Missense_Mutation	19	51649165	C	G	32	54
BRCA	TCGA-E2-A159	CEACAM18	SNP	Missense_Mutation	19	51983701	T	A	60	42
BRCA	TCGA-E2-A159	EPS8L1	SNP	Missense_Mutation	19	55591557	G	A	39	60
BRCA	TCGA-E2-A159	PTPRH	SNP	Missense_Mutation	19	55716783	C	T	30	44
BRCA	TCGA-E2-A159	C2orf50	SNP	Missense_Mutation	2	11284204	G	C	33	59
BRCA	TCGA-E2-A159	GREB1	SNP	Missense_Mutation	2	11702668	C	A	30	58
BRCA	TCGA-E2-A159	TMEM37	SNP	Silent	2	120194851	C	A	30	49
BRCA	TCGA-E2-A159	NCKAP5	SNP	Silent	2	133636435	G	T	38	44
BRCA	TCGA-E2-A159	BAZ2B	SNP	Missense_Mutation	2	160257133	G	C	36	96
BRCA	TCGA-E2-A159	METTL5	SNP	Missense_Mutation	2	170668867	C	G	29	59
BRCA	TCGA-E2-A159	MYT1L	SNP	Missense_Mutation	2	1805566	C	G	32	99
BRCA	TCGA-E2-A159	NT5C1B-RDH14	SNP	Missense_Mutation	2	18757611	C	G	29	62
BRCA	TCGA-E2-A159	APOB	SNP	Missense_Mutation	2	21232419	C	T	29	54
BRCA	TCGA-E2-A159	ITSN2	SNP	Missense_Mutation	2	24484608	C	T	29	82
BRCA	TCGA-E2-A159	CENPO	SNP	Nonsense_Mutation	2	25040616	C	T	29	49
BRCA	TCGA-E2-A159	SOX11	SNP	Missense_Mutation	2	5833196	G	T	37	91
BRCA	TCGA-E2-A159	SFTPB	SNP	Missense_Mutation	2	85893784	C	G	29	56
BRCA	TCGA-E2-A159	C20orf26	SNP	Nonsense_Mutation	20	20269469	C	T	29	70
BRCA	TCGA-E2-A159	SYCP2	SNP	Missense_Mutation	20	58494610	G	C	45	54
BRCA	TCGA-E2-A159	NCAM2	SNP	Silent	21	22804504	G	A	39	21
BRCA	TCGA-E2-A159	ERG	SNP	Missense_Mutation	21	39817464	C	T	29	98
BRCA	TCGA-E2-A159	PCNT	SNP	Missense_Mutation	21	47851969	A	G	11	59
BRCA	TCGA-E2-A159	UPB1	SNP	Silent	22	24919738	C	T	29	61
BRCA	TCGA-E2-A159	DMC1	SNP	Missense_Mutation	22	38933603	G	A	36	79
BRCA	TCGA-E2-A159	FAM83F	SNP	Missense_Mutation	22	40425538	C	A	32	62
BRCA	TCGA-E2-A159	DOCK11	SNP	Missense_Mutation	23	117679991	C	T	32	89
BRCA	TCGA-E2-A159	ZNF75D	SNP	Missense_Mutation	23	134427939	A	C	3	54
BRCA	TCGA-E2-A159	SAGE1	SNP	Silent	23	134995026	C	G	29	50
BRCA	TCGA-E2-A159	BRS3	SNP	Missense_Mutation	23	135570328	G	T	45	72
BRCA	TCGA-E2-A159	CXorf19	SNP	Missense_Mutation	23	138444474	G	T	34	56
BRCA	TCGA-E2-A159	AKAP17A	SNP	Missense_Mutation	23	1712954	C	T	19	62
BRCA	TCGA-E2-A159	MAGEB10	SNP	Missense_Mutation	23	27839536	C	T	32	35
BRCA	TCGA-E2-A159	MAGEB1	SNP	Missense_Mutation	23	30269315	C	A	20	47
BRCA	TCGA-E2-A159	PCTK1	SNP	Nonsense_Mutation	23	47085540	G	A	41	49
BRCA	TCGA-E2-A159	TIGIT	SNP	Missense_Mutation	3	114014431	C	T	32	62
BRCA	TCGA-E2-A159	XIRP1	SNP	Missense_Mutation	3	39228203	G	C	33	60
BRCA	TCGA-E2-A159	GTDC2	SNP	Silent	3	43122777	C	T	29	57
BRCA	TCGA-E2-A159	SLC26A6	SNP	Splice_Site	3	48667870	C	A	18	99
BRCA	TCGA-E2-A159	BANK1	SNP	Missense_Mutation	4	102946639	C	A	20	65
BRCA	TCGA-E2-A159	PRDM5	SNP	Silent	4	121616407	C	T	29	56
BRCA	TCGA-E2-A159	PRMT10	SNP	Missense_Mutation	4	148575483	G	C	33	75
BRCA	TCGA-E2-A159	C1QTNF7	SNP	Missense_Mutation	4	15444327	C	G	32	68
BRCA	TCGA-E2-A159	TMA16	SNP	Silent	4	164436573	G	A	37	40
BRCA	TCGA-E2-A159	WDR17	SNP	Splice_Site	4	177049888	G	C	33	95
BRCA	TCGA-E2-A159	CPZ	SNP	Missense_Mutation	4	8607783	C	G	32	58
BRCA	TCGA-E2-A159	PCDHB1	SNP	Silent	5	140431703	C	T	19	44
BRCA	TCGA-E2-A159	TRIO	SNP	Missense_Mutation	5	14399162	T	C	61	92
BRCA	TCGA-E2-A159	SPARC	SNP	Silent	5	151047100	G	C	45	51
BRCA	TCGA-E2-A159	G3BP1	SNP	Missense_Mutation	5	151178806	C	G	32	97
BRCA	TCGA-E2-A159	FAM114A2	SNP	Missense_Mutation	5	153409057	G	C	45	81
BRCA	TCGA-E2-A159	ATP10B	SNP	Missense_Mutation	5	160076224	C	T	19	83
BRCA	TCGA-E2-A159	RANBP17	SNP	Missense_Mutation	5	170669806	G	A	33	86
BRCA	TCGA-E2-A159	DOK3	SNP	Missense_Mutation	5	176931433	C	G	29	56
BRCA	TCGA-E2-A159	COL23A1	SNP	Missense_Mutation	5	177669088	C	G	32	73
BRCA	TCGA-E2-A159	PDE4D	SNP	Missense_Mutation	5	58270700	C	G	32	96
BRCA	TCGA-E2-A159	TRIM23	SNP	Missense_Mutation	5	64892251	G	C	45	100
BRCA	TCGA-E2-A159	LOC100131573	SNP	Silent	5	93929057	C	G	32	48
BRCA	TCGA-E2-A159	TTC37	SNP	Missense_Mutation	5	94863730	C	G	19	53
BRCA	TCGA-E2-A159	AIM1	SNP	Missense_Mutation	6	106967869	G	C	41	48
BRCA	TCGA-E2-A159	SLC2A12	SNP	Silent	6	134349970	G	T	47	51
BRCA	TCGA-E2-A159	UTRN	SNP	Splice_Site	6	144761487	G	C	33	98
BRCA	TCGA-E2-A159	RAET1G	SNP	Silent	6	150240756	C	T	29	55
BRCA	TCGA-E2-A159	SYNE1	SNP	Silent	6	152599233	G	T	45	57
BRCA	TCGA-E2-A159	ARID1B	SNP	Missense_Mutation	6	157528895	G	A	33	69
BRCA	TCGA-E2-A159	KIF13A	SNP	Missense_Mutation	6	17837174	C	T	27	100
BRCA	TCGA-E2-A159	HIST1H2BC	SNP	Missense_Mutation	6	26123759	G	A	41	86
BRCA	TCGA-E2-A159	NOTCH4	SNP	Missense_Mutation	6	32190561	C	G	29	71
BRCA	TCGA-E2-A159	WDR46	SNP	Silent	6	33247580	G	A	33	88
BRCA	TCGA-E2-A159	ZNF318	SNP	Silent	6	43306894	A	C	15	45
BRCA	TCGA-E2-A159	SLC35B2	SNP	Missense_Mutation	6	44223268	C	T	29	100
BRCA	TCGA-E2-A159	CDC5L	SNP	Missense_Mutation	6	44358031	G	A	45	100
BRCA	TCGA-E2-A159	TFR2	SNP	Splice_Site	7	100238598	C	A	18	77
BRCA	TCGA-E2-A159	LAMB1	SNP	Nonsense_Mutation	7	107594139	G	T	37	49
BRCA	TCGA-E2-A159	FASTK	SNP	Silent	7	150774081	G	A	33	72
BRCA	TCGA-E2-A159	MACC1	SNP	Missense_Mutation	7	20199737	G	C	45	72
BRCA	TCGA-E2-A159	BAIAP2L1	SNP	Silent	7	97937087	G	C	45	36
BRCA	TCGA-E2-A159	STAG3	SNP	Nonsense_Mutation	7	99799582	C	A	31	64
BRCA	TCGA-E2-A159	SYBU	SNP	Missense_Mutation	8	110587700	C	T	18	44
BRCA	TCGA-E2-A159	LOC100131552	SNP	Silent	8	123715489	G	A	45	59
BRCA	TCGA-E2-A159	TSNARE1	SNP	Missense_Mutation	8	143356182	T	G	54	65
BRCA	TCGA-E2-A159	SCARA3	SNP	Missense_Mutation	8	27528720	C	T	29	63
BRCA	TCGA-E2-A159	PENK	SNP	Silent	8	57354365	C	T	23	51
BRCA	TCGA-E2-A159	DPY19L4	SNP	Missense_Mutation	8	95751734	G	C	34	95
BRCA	TCGA-E2-A159	CORO2A	SNP	Missense_Mutation	9	100890527	C	T	32	80
BRCA	TCGA-E2-A159	TXNDC8	SNP	Missense_Mutation	9	113065819	C	G	32	74
BRCA	TCGA-E2-A159	NPDC1	SNP	Missense_Mutation	9	139934476	C	G	29	63
BRCA	TCGA-E2-A159	MAN1B1	SNP	Missense_Mutation	9	139995528	G	C	45	99
BRCA	TCGA-E2-A159	NFIB	SNP	Missense_Mutation	9	14146751	C	G	32	90
BRCA	TCGA-E2-A159	RFX3	SNP	Missense_Mutation	9	3263041	G	T	40	100
BRCA	TCGA-E2-A159	FAM22F	SNP	Missense_Mutation	9	97082696	C	T	29	47
BRCA	TCGA-E2-A15A	EPHA2	SNP	Missense_Mutation	1	16464453	C	T	30	80
BRCA	TCGA-E2-A15A	RAB3GAP2	SNP	Missense_Mutation	1	220359016	A	G	13	73
BRCA	TCGA-E2-A15A	GTPBP4	SNP	Splice_site	10	1038429	G	T	41	88
BRCA	TCGA-E2-A15A	SORCS1	SNP	Nonsense_Mutation	10	108380241	C	T	21	84
BRCA	TCGA-E2-A15A	TACC2	SNP	Missense_Mutation	10	123845245	C	T	21	67
BRCA	TCGA-E2-A15A	SRGN	SNP	Missense_Mutation	10	70863653	G	A	40	55
BRCA	TCGA-E2-A15A	REXO2	SNP	Missense_Mutation	11	114318554	G	C	44	85
BRCA	TCGA-E2-A15A	F2	SNP	Missense_Mutation	11	46741275	C	G	19	49
BRCA	TCGA-E2-A15A	TTC9C	SNP	Missense_Mutation	11	62502958	G	A	39	98
BRCA	TCGA-E2-A15A	ATL3	SNP	Missense_Mutation	11	63398771	T	G	60	61
BRCA	TCGA-E2-A15A	NPAS4	SNP	Missense_Mutation	11	66192244	A	G	11	70
BRCA	TCGA-E2-A15A	ZNF214	SNP	Missense_Mutation	11	7021109	C	A	32	53
BRCA	TCGA-E2-A15A	TUB	SNP	Missense_Mutation	11	8122413	C	T	19	100
BRCA	TCGA-E2-A15A	TAOK3	SNP	Splice_Site	12	118619174	A	C	10	91
BRCA	TCGA-E2-A15A	ZNF10	DEL	Frame_Shift_Del	12	133733175	T	-	56	83
BRCA	TCGA-E2-A15A	SYT10	SNP	Missense_Mutation	12	33538115	C	T	21	93
BRCA	TCGA-E2-A15A	DPEP1	SNP	Missense_Mutation	16	89702958	C	T	23	59
BRCA	TCGA-E2-A15A	MGAT5B	SNP	Splice_site	17	74902269	G	A	35	84
BRCA	TCGA-E2-A15A	WIZ	SNP	Missense_Mutation	19	15559079	G	C	37	57
BRCA	TCGA-E2-A15A	CCDC155	SNP	Missense_Mutation	19	49920669	C	A	28	54
BRCA	TCGA-E2-A15A	SCN1A	SNP	Missense_Mutation	2	166854657	C	T	20	81
BRCA	TCGA-E2-A15A	ZAK	SNP	Missense_Mutation	2	174131293	C	T	18	62
BRCA	TCGA-E2-A15A	PRKCE	SNP	Silent	2	46207466	C	T	19	48
BRCA	TCGA-E2-A15A	CEP250	SNP	Missense_Mutation	20	34061226	C	G	29	71
BRCA	TCGA-E2-A15A	ADAMTS1	SNP	Silent	21	28214903	G	A	33	72
BRCA	TCGA-E2-A15A	DOPEY2	SNP	Missense_Mutation	21	37618234	G	A	46	94
BRCA	TCGA-E2-A15A	SLC10A3	SNP	Missense_Mutation	23	153715914	C	T	23	60
BRCA	TCGA-E2-A15A	PHF16	DEL	Splice_Site	23	46887292	A	-	7	78
BRCA	TCGA-E2-A15A	WNK3	SNP	Missense_Mutation	23	54224848	G	A	33	61
BRCA	TCGA-E2-A15A	PDHB	SNP	Missense_Mutation	3	58413894	T	G	52	81
BRCA	TCGA-E2-A15A	FBXL17	SNP	Nonsense_Mutation	5	107216863	G	A	38	78
BRCA	TCGA-E2-A15A	ODZ2	SNP	Missense_Mutation	5	167626024	G	C	47	100
BRCA	TCGA-E2-A15A	KIAA1191	SNP	Missense_Mutation	5	175782743	G	C	34	60
BRCA	TCGA-E2-A15A	GPR98	SNP	Missense_Mutation	5	90052933	A	C	3	57
BRCA	TCGA-E2-A15A	FAM184A	SNP	Missense_Mutation	6	119345581	G	T	46	98
BRCA	TCGA-E2-A15A	EXOC2	SNP	Missense_Mutation	6	564578	C	A	30	97
BRCA	TCGA-E2-A15A	PNPLA8	SNP	Missense_Mutation	7	108155517	G	C	37	59
BRCA	TCGA-E2-A15A	KCNH2	SNP	Missense_Mutation	7	150648593	C	T	19	78
BRCA	TCGA-E2-A15A	PLEC	SNP	Silent	8	145004699	C	T	32	57
BRCA	TCGA-E2-A15A	SCAI	SNP	Missense_Mutation	9	127781175	C	T	27	94
BRCA	TCGA-E2-A15A	PRRC2B	SNP	Missense_Mutation	9	134362560	G	A	38	66
BRCA	TCGA-E2-A15A	PTPRD	SNP	Nonsense_Mutation	9	8500901	C	A	31	82
BRCA	TCGA-E2-A15A	AGTPBP1	SNP	Missense_Mutation	9	88211299	C	A	22	99
BRCA	TCGA-E2-A15C	ACTN2	SNP	Missense_Mutation	1	236907962	C	T	31	86
BRCA	TCGA-E2-A15C	PGBD2	SNP	Silent	1	249210807	C	G	29	47
BRCA	TCGA-E2-A15C	GAL3ST3	SNP	Silent	11	65810935	C	T	27	51
BRCA	TCGA-E2-A15C	RPS6KB2	SNP	Splice_Site	11	67200919	G	T	44	72
BRCA	TCGA-E2-A15C	OR5P2	SNP	Missense_Mutation	11	7817592	C	T	32	43
BRCA	TCGA-E2-A15C	DDX23	SNP	Missense_Mutation	12	49228171	G	A	39	82
BRCA	TCGA-E2-A15C	MEGF11	SNP	Silent	15	66257398	G	A	42	59
BRCA	TCGA-E2-A15C	PLIN1	SNP	Missense_Mutation	15	90213364	C	T	23	52
BRCA	TCGA-E2-A15C	SMARCA4	SNP	Silent	19	11129678	C	G	23	35
BRCA	TCGA-E2-A15C	MBD3	SNP	Missense_Mutation	19	1585064	T	C	60	46
BRCA	TCGA-E2-A15C	ZC3H4	SNP	Missense_Mutation	19	47570929	G	A	39	63
BRCA	TCGA-E2-A15C	RUVBL2	SNP	Silent	19	49507653	G	A	39	0
BRCA	TCGA-E2-A15C	TTC21B	INS	Frame_Shift_Ins	2	166788288	-	A	57	62
BRCA	TCGA-E2-A15C	CREB1	SNP	Missense_Mutation	2	208442363	C	T	23	84
BRCA	TCGA-E2-A15C	GIGYF2	SNP	Missense_Mutation	2	233708862	C	T	19	100
BRCA	TCGA-E2-A15C	DYSF	SNP	Missense_Mutation	2	71894557	C	T	28	95
BRCA	TCGA-E2-A15C	ZNRF3	SNP	Silent	22	29445672	G	A	37	11
BRCA	TCGA-E2-A15C	HCFC1	SNP	Missense_Mutation	23	153222202	C	A	22	96
BRCA	TCGA-E2-A15C	PHKA2	SNP	Missense_Mutation	23	18944633	G	A	38	80
BRCA	TCGA-E2-A15C	GPR174	SNP	Missense_Mutation	23	78426998	G	T	35	50
BRCA	TCGA-E2-A15C	KLF15	SNP	Missense_Mutation	3	126062602	G	A	38	60
BRCA	TCGA-E2-A15C	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A15C	LOC100287077	SNP	Silent	4	8621348	C	T	23	47
BRCA	TCGA-E2-A15C	MMRN1	SNP	Missense_Mutation	4	90833166	G	T	48	82
BRCA	TCGA-E2-A15C	PCDHB10	SNP	Missense_Mutation	5	140573470	C	T	22	92
BRCA	TCGA-E2-A15C	MAP3K1	INS	Frame_Shift_Ins	5	56161239	-	CT	18	72
BRCA	TCGA-E2-A15C	MTO1	SNP	Missense_Mutation	6	74190485	G	A	41	99
BRCA	TCGA-E2-A15C	AMPH	SNP	Missense_Mutation	7	38431426	G	T	44	51
BRCA	TCGA-E2-A15C	GRB10	SNP	Missense_Mutation	7	50673033	G	A	39	100
BRCA	TCGA-E2-A15C	POM121L12	SNP	Silent	7	53103484	C	G	22	43
BRCA	TCGA-E2-A15C	PTPRD	SNP	Missense_Mutation	9	8341168	G	A	41	88
BRCA	TCGA-E2-A15D	MMACHC	SNP	Silent	1	45974590	T	A	53	49
BRCA	TCGA-E2-A15D	WLS	SNP	Missense_Mutation	1	68624888	C	T	19	99
BRCA	TCGA-E2-A15D	GATA3	SNP	Splice_Site	10	8115701	G	C	33	99
BRCA	TCGA-E2-A15D	NCAPD3	SNP	Missense_Mutation	11	134027885	C	T	23	53
BRCA	TCGA-E2-A15D	MED13L	SNP	Missense_Mutation	12	116429370	C	T	28	96
BRCA	TCGA-E2-A15D	SP7	SNP	Missense_Mutation	12	53722021	G	A	42	58
BRCA	TCGA-E2-A15D	CD69	SNP	Nonsense_Mutation	12	9907274	G	A	40	65
BRCA	TCGA-E2-A15D	GSX1	SNP	Missense_Mutation	13	28367816	C	T	19	64
BRCA	TCGA-E2-A15D	MYCBP2	SNP	Missense_Mutation	13	77636761	C	A	30	100
BRCA	TCGA-E2-A15D	UNC79	SNP	Missense_Mutation	14	94088576	C	A	32	80
BRCA	TCGA-E2-A15D	MAP1A	SNP	Nonsense_Mutation	15	43814971	G	T	45	71
BRCA	TCGA-E2-A15D	FBXL19	SNP	Missense_Mutation	16	30958481	G	A	39	68
BRCA	TCGA-E2-A15D	CNOT1	SNP	Silent	16	58585042	T	C	59	49
BRCA	TCGA-E2-A15D	WWP2	SNP	Missense_Mutation	16	69969793	C	T	18	100
BRCA	TCGA-E2-A15D	QRICH2	SNP	Missense_Mutation	17	74274115	C	T	27	61
BRCA	TCGA-E2-A15D	USP34	SNP	Missense_Mutation	2	61622023	G	T	33	86
BRCA	TCGA-E2-A15D	REG1A	SNP	Silent	2	79350038	T	C	59	37
BRCA	TCGA-E2-A15D	LOC100289538	DEL	Frame_Shift_Del	20	3027416	C	-	26	35
BRCA	TCGA-E2-A15D	APEX2	SNP	Missense_Mutation	23	55028014	G	A	43	88
BRCA	TCGA-E2-A15D	FHIT	SNP	Missense_Mutation	3	60522632	A	G	10	86
BRCA	TCGA-E2-A15D	SH3TC1	SNP	Silent	4	8217920	C	T	21	66
BRCA	TCGA-E2-A15D	PRDM1	SNP	Missense_Mutation	6	106547367	C	T	31	99
BRCA	TCGA-E2-A15D	RMND1	SNP	Missense_Mutation	6	151766672	T	C	56	54
BRCA	TCGA-E2-A15D	MPC1	SNP	Missense_Mutation	6	166779514	C	T	27	65
BRCA	TCGA-E2-A15D	DLL1	SNP	Missense_Mutation	6	170592575	G	T	38	58
BRCA	TCGA-E2-A15D	CUL9	SNP	Missense_Mutation	6	43153245	A	C	7	88
BRCA	TCGA-E2-A15D	MUC17	SNP	Missense_Mutation	7	100677246	C	T	28	57
BRCA	TCGA-E2-A15D	EIF3B	SNP	Missense_Mutation	7	2418800	A	G	9	93
BRCA	TCGA-E2-A15D	TRPS1	SNP	Missense_Mutation	8	116426295	T	C	53	75
BRCA	TCGA-E2-A15D	ZCCHC7	SNP	Missense_Mutation	9	37354798	A	G	3	50
BRCA	TCGA-E2-A15E	GPR61	SNP	Silent	1	110086562	C	T	30	65
BRCA	TCGA-E2-A15E	TSEN15	SNP	Missense_Mutation	1	184023924	G	T	47	64
BRCA	TCGA-E2-A15E	CHI3L1	SNP	Missense_Mutation	1	203152855	G	C	33	93
BRCA	TCGA-E2-A15E	PRKCZ	SNP	Missense_Mutation	1	2103803	G	A	37	96
BRCA	TCGA-E2-A15E	ACTN2	SNP	Silent	1	236883433	C	A	22	50
BRCA	TCGA-E2-A15E	ETS1	SNP	Missense_Mutation	11	128443000	C	T	22	49
BRCA	TCGA-E2-A15E	EED	SNP	Missense_Mutation	11	85961453	A	G	1	88
BRCA	TCGA-E2-A15E	GRIN2B	SNP	Missense_Mutation	12	13906449	G	A	38	79
BRCA	TCGA-E2-A15E	TMEM117	SNP	Missense_Mutation	12	44238679	C	T	21	71
BRCA	TCGA-E2-A15E	DCLK1	SNP	Silent	13	36700191	G	A	40	49
BRCA	TCGA-E2-A15E	CEP128	SNP	Missense_Mutation	14	81382827	G	T	42	76
BRCA	TCGA-E2-A15E	MGA	SNP	Missense_Mutation	15	42032290	C	T	19	74
BRCA	TCGA-E2-A15E	EFTUD2	SNP	Missense_Mutation	17	42929146	G	A	39	66
BRCA	TCGA-E2-A15E	TP53	SNP	Missense_Mutation	17	7578271	T	C	51	76
BRCA	TCGA-E2-A15E	ALOX12B	SNP	Silent	17	7980404	G	A	40	50
BRCA	TCGA-E2-A15E	DHRS7C	SNP	Missense_Mutation	17	9680524	G	A	39	93
BRCA	TCGA-E2-A15E	NR1H2	SNP	Missense_Mutation	19	50885244	A	T	2	67
BRCA	TCGA-E2-A15E	C21orf119	SNP	Missense_Mutation	21	33765616	G	C	42	37
BRCA	TCGA-E2-A15E	DYRK1A	SNP	Missense_Mutation	21	38884440	A	G	14	88
BRCA	TCGA-E2-A15E	KCNJ6	SNP	Missense_Mutation	21	39086565	T	C	63	80
BRCA	TCGA-E2-A15E	SHROOM2	SNP	Missense_Mutation	23	9905362	G	A	38	74
BRCA	TCGA-E2-A15E	WNT7A	SNP	Missense_Mutation	3	13860785	C	T	19	96
BRCA	TCGA-E2-A15E	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A15E	DGKG	SNP	Splice_Site	3	185960291	A	G	14	87
BRCA	TCGA-E2-A15E	LHFPL4	SNP	Missense_Mutation	3	9594129	C	G	22	95
BRCA	TCGA-E2-A15E	PCDHA1	SNP	Missense_Mutation	5	140167773	C	T	19	79
BRCA	TCGA-E2-A15E	PCDHGB2	SNP	Missense_Mutation	5	140741005	A	G	7	70
BRCA	TCGA-E2-A15E	DSP	SNP	Missense_Mutation	6	7570674	G	A	45	98
BRCA	TCGA-E2-A15E	TEX15	SNP	Missense_Mutation	8	30695338	C	G	32	47
BRCA	TCGA-E2-A15E	TEX15	SNP	Missense_Mutation	8	30695447	C	G	32	49
BRCA	TCGA-E2-A15E	TEX15	SNP	Missense_Mutation	8	30695512	C	A	32	57
BRCA	TCGA-E2-A15F	ANKRD34A	SNP	Silent	1	145473655	C	T	19	73
BRCA	TCGA-E2-A15F	EFCAB2	SNP	Missense_Mutation	1	245246937	C	T	28	52
BRCA	TCGA-E2-A15F	SH3BP5L	SNP	Missense_Mutation	1	249107351	G	A	38	90
BRCA	TCGA-E2-A15F	TYW3	SNP	Missense_Mutation	1	75202299	A	T	12	81
BRCA	TCGA-E2-A15F	PNLIP	SNP	Missense_Mutation	10	118313248	G	A	39	61
BRCA	TCGA-E2-A15F	KIAA1279	SNP	Silent	10	70748750	T	C	55	11
BRCA	TCGA-E2-A15F	UEVLD	SNP	Missense_Mutation	11	18568489	G	C	42	63
BRCA	TCGA-E2-A15F	MUC15	SNP	Missense_Mutation	11	26584710	G	A	40	50
BRCA	TCGA-E2-A15F	RAG2	SNP	Missense_Mutation	11	36615502	G	A	37	84
BRCA	TCGA-E2-A15F	STRN3	SNP	Missense_Mutation	14	31388247	G	C	43	71
BRCA	TCGA-E2-A15F	PDXDC1	DEL	Frame_Shift_Del	16	15128373	G	-	35	46
BRCA	TCGA-E2-A15F	SLC47A2	SNP	Missense_Mutation	17	19607404	C	T	19	27
BRCA	TCGA-E2-A15F	PBX4	SNP	Missense_Mutation	19	19681029	A	G	4	80
BRCA	TCGA-E2-A15F	CBR1	SNP	Missense_Mutation	21	37445117	G	T	46	53
BRCA	TCGA-E2-A15F	SLC19A1	SNP	Missense_Mutation	21	46951971	G	A	39	96
BRCA	TCGA-E2-A15F	MORC1	SNP	Missense_Mutation	3	108819313	G	A	40	60
BRCA	TCGA-E2-A15F	PARP15	SNP	Missense_Mutation	3	122296675	C	T	30	46
BRCA	TCGA-E2-A15F	AMT	SNP	Missense_Mutation	3	49455277	A	T	12	86
BRCA	TCGA-E2-A15F	ANKHD1	INS	Frame_Shift_Ins	5	139862242	-	A	61	50
BRCA	TCGA-E2-A15F	HOXA1	SNP	Missense_Mutation	7	27134229	G	A	39	85
BRCA	TCGA-E2-A15F	KCNU1	SNP	Missense_Mutation	8	36662741	G	C	33	73
BRCA	TCGA-E2-A15G	YY1AP1	SNP	Splice_Site	1	155649105	C	G	28	48
BRCA	TCGA-E2-A15G	FMO1	SNP	Missense_Mutation	1	171251383	C	A	18	100
BRCA	TCGA-E2-A15G	HMCN1	DEL	Frame_Shift_Del	1	185984285	TTGTAGTTCCA	-	64	59
BRCA	TCGA-E2-A15G	SLC5A9	SNP	Missense_Mutation	1	48703432	C	A	20	69
BRCA	TCGA-E2-A15G	DNAJB4	SNP	Silent	1	78481910	G	A	41	61
BRCA	TCGA-E2-A15G	TAF3	SNP	Silent	10	8006835	C	G	23	36
BRCA	TCGA-E2-A15G	SLC16A12	SNP	Silent	10	91198855	G	A	37	47
BRCA	TCGA-E2-A15G	ZFYVE27	DEL	Frame_Shift_Del	10	99502856	A	-	7	81
BRCA	TCGA-E2-A15G	PCNXL3	SNP	Missense_Mutation	11	65396838	G	A	48	94
BRCA	TCGA-E2-A15G	FGF4	SNP	Silent	11	69588113	G	T	47	53
BRCA	TCGA-E2-A15G	CCDC67	SNP	Nonsense_Mutation	11	93097377	C	T	17	82
BRCA	TCGA-E2-A15G	SBF2	SNP	Missense_Mutation	11	9989966	T	A	64	80
BRCA	TCGA-E2-A15G	POLR3B	SNP	Missense_Mutation	12	106824180	G	A	36	100
BRCA	TCGA-E2-A15G	IFT81	SNP	Missense_Mutation	12	110566885	G	A	44	83
BRCA	TCGA-E2-A15G	TAOK3	SNP	Missense_Mutation	12	118590144	A	G	7	91
BRCA	TCGA-E2-A15G	IRAK4	SNP	Missense_Mutation	12	44180307	G	T	48	50
BRCA	TCGA-E2-A15G	NALCN	SNP	Missense_Mutation	13	101756927	A	T	8	93
BRCA	TCGA-E2-A15G	CARKD	SNP	Missense_Mutation	13	111274599	C	T	31	70
BRCA	TCGA-E2-A15G	HNRNPA1L2	SNP	Silent	13	53217035	C	A	29	49
BRCA	TCGA-E2-A15G	PCSK6	SNP	Missense_Mutation	15	101910696	G	A	40	52
BRCA	TCGA-E2-A15G	TRPM1	SNP	Silent	15	31295003	G	A	40	48
BRCA	TCGA-E2-A15G	TLN2	SNP	Silent	15	63102180	C	T	31	47
BRCA	TCGA-E2-A15G	HERC1	SNP	Silent	15	63970199	G	C	39	17
BRCA	TCGA-E2-A15G	KIAA1199	SNP	Silent	15	81176528	T	C	49	49
BRCA	TCGA-E2-A15G	FES	SNP	Missense_Mutation	15	91436887	C	A	18	62
BRCA	TCGA-E2-A15G	ZFHX3	SNP	Missense_Mutation	16	72830186	T	C	57	92
BRCA	TCGA-E2-A15G	MYH13	SNP	Silent	17	10213133	G	A	40	41
BRCA	TCGA-E2-A15G	HOXB2	SNP	Missense_Mutation	17	46620904	C	A	28	56
BRCA	TCGA-E2-A15G	USP6	SNP	Missense_Mutation	17	5072218	G	A	45	64
BRCA	TCGA-E2-A15G	GABARAP	SNP	Missense_Mutation	17	7145570	T	C	58	85
BRCA	TCGA-E2-A15G	CDH20	SNP	Missense_Mutation	18	59167643	C	A	17	100
BRCA	TCGA-E2-A15G	MKNK2	SNP	Silent	19	2041144	G	T	43	50
BRCA	TCGA-E2-A15G	MYBPC2	SNP	Silent	19	50939058	G	A	37	48
BRCA	TCGA-E2-A15G	MYBPC2	SNP	Splice_Site	19	50964798	G	A	35	95
BRCA	TCGA-E2-A15G	DENND1C	SNP	Splice_Site	19	6480063	C	T	32	79
BRCA	TCGA-E2-A15G	CCDC141	SNP	Silent	2	179730515	G	A	47	50
BRCA	TCGA-E2-A15G	CHPF	SNP	Missense_Mutation	2	220405780	C	T	31	55
BRCA	TCGA-E2-A15G	RNF103	SNP	Silent	2	86832076	C	T	25	63
BRCA	TCGA-E2-A15G	RRP1	SNP	Missense_Mutation	21	45217847	C	T	23	81
BRCA	TCGA-E2-A15G	BRS3	SNP	Silent	23	135574435	G	A	45	58
BRCA	TCGA-E2-A15G	FAM48B1	SNP	Silent	23	24383517	C	T	25	52
BRCA	TCGA-E2-A15G	KIAA1257	SNP	Missense_Mutation	3	128707653	A	G	7	77
BRCA	TCGA-E2-A15G	TBL1XR1	SNP	Nonsense_Mutation	3	176744190	T	A	63	90
BRCA	TCGA-E2-A15G	TBL1XR1	SNP	Nonsense_Mutation	3	176771659	G	A	45	98
BRCA	TCGA-E2-A15G	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A15G	BCL6	SNP	Missense_Mutation	3	187451419	G	C	44	68
BRCA	TCGA-E2-A15G	DHX30	SNP	Missense_Mutation	3	47891404	C	T	27	54
BRCA	TCGA-E2-A15G	KBTBD8	SNP	Silent	3	67054333	G	A	48	53
BRCA	TCGA-E2-A15G	ROBO2	SNP	Missense_Mutation	3	77623847	T	G	49	52
BRCA	TCGA-E2-A15G	SRGAP3	SNP	Missense_Mutation	3	9027246	T	C	56	78
BRCA	TCGA-E2-A15G	PDHA2	SNP	Missense_Mutation	4	96761984	G	T	41	78
BRCA	TCGA-E2-A15G	EGFLAM	SNP	Silent	5	38407953	G	A	40	53
BRCA	TCGA-E2-A15G	C6	SNP	Nonsense_Mutation	5	41159254	G	A	40	59
BRCA	TCGA-E2-A15G	ADAMTS16	SNP	Silent	5	5318312	G	A	39	37
BRCA	TCGA-E2-A15G	MAP3K1	SNP	Missense_Mutation	5	56160565	A	C	7	84
BRCA	TCGA-E2-A15G	MAP3K1	DEL	Frame_Shift_Del	5	56177598	G	-	47	94
BRCA	TCGA-E2-A15G	MYB	SNP	Nonsense_Mutation	6	135511399	G	A	41	100
BRCA	TCGA-E2-A15G	PLEKHG1	SNP	Silent	6	151055039	G	A	39	44
BRCA	TCGA-E2-A15G	RARS2	SNP	Missense_Mutation	6	88279250	G	T	47	66
BRCA	TCGA-E2-A15G	GDF6	SNP	Silent	8	97157010	G	A	38	74
BRCA	TCGA-E2-A15G	C9orf69	SNP	Missense_Mutation	9	139008534	A	T	6	51
BRCA	TCGA-E2-A15G	C9orf142	SNP	Missense_Mutation	9	139888077	G	A	39	63
BRCA	TCGA-E2-A15H	RGS7	SNP	Missense_Mutation	1	240969512	C	A	21	70
BRCA	TCGA-E2-A15H	IFI44	SNP	Missense_Mutation	1	79115985	C	A	30	48
BRCA	TCGA-E2-A15H	GATA3	INS	Frame_Shift_Ins	10	8115851	-	A	17	78
BRCA	TCGA-E2-A15H	XRRA1	SNP	Missense_Mutation	11	74651907	A	C	12	62
BRCA	TCGA-E2-A15H	NUAK1	SNP	Missense_Mutation	12	106461239	G	A	43	54
BRCA	TCGA-E2-A15H	RFX4	SNP	Silent	12	106995096	G	A	41	50
BRCA	TCGA-E2-A15H	FGD4	SNP	Nonsense_Mutation	12	32778624	C	T	23	83
BRCA	TCGA-E2-A15H	CYP27B1	SNP	Missense_Mutation	12	58159205	G	A	42	62
BRCA	TCGA-E2-A15H	NID2	SNP	Missense_Mutation	14	52485857	C	T	19	84
BRCA	TCGA-E2-A15H	ZNF668	SNP	Missense_Mutation	16	31073089	G	A	37	82
BRCA	TCGA-E2-A15H	CA7	SNP	Silent	16	66884454	G	A	43	57
BRCA	TCGA-E2-A15H	ZNF385C	SNP	Missense_Mutation	17	40180151	G	A	39	70
BRCA	TCGA-E2-A15H	CBX8	SNP	Missense_Mutation	17	77768618	C	T	30	83
BRCA	TCGA-E2-A15H	CBX8	SNP	Missense_Mutation	17	77768957	C	T	26	62
BRCA	TCGA-E2-A15H	ANO8	SNP	Missense_Mutation	19	17435958	C	A	24	64
BRCA	TCGA-E2-A15H	WDR33	SNP	Missense_Mutation	2	128522166	C	T	27	55
BRCA	TCGA-E2-A15H	POTEE	SNP	Missense_Mutation	2	131976471	G	A	40	34
BRCA	TCGA-E2-A15H	XPNPEP3	SNP	Missense_Mutation	22	41310322	A	G	4	65
BRCA	TCGA-E2-A15H	PHF21B	SNP	Missense_Mutation	22	45309833	T	C	51	59
BRCA	TCGA-E2-A15H	BCORL1	SNP	Missense_Mutation	23	129147755	C	T	23	87
BRCA	TCGA-E2-A15H	BCOR	SNP	Missense_Mutation	23	39923040	G	A	37	85
BRCA	TCGA-E2-A15H	BRWD3	SNP	Missense_Mutation	23	79990688	G	C	39	94
BRCA	TCGA-E2-A15H	TNIK	SNP	Silent	3	170784081	G	A	38	57
BRCA	TCGA-E2-A15H	DMP1	DEL	Frame_Shift_Del	4	88584457	C	-	26	64
BRCA	TCGA-E2-A15H	PHACTR2	SNP	Missense_Mutation	6	144070161	A	G	11	77
BRCA	TCGA-E2-A15H	PPIL4	SNP	Missense_Mutation	6	149862525	G	A	39	67
BRCA	TCGA-E2-A15H	SDK1	SNP	Missense_Mutation	7	4153004	C	A	22	96
BRCA	TCGA-E2-A15H	GTF2I	SNP	Missense_Mutation	7	74148311	C	T	26	63
BRCA	TCGA-E2-A15H	KIAA0368	SNP	Missense_Mutation	9	114170924	C	A	30	95
BRCA	TCGA-E2-A15H	FANCC	SNP	Silent	9	97873829	T	C	55	45
BRCA	TCGA-E2-A15I	ANKRD30A	SNP	Silent	10	37486216	C	G	23	50
BRCA	TCGA-E2-A15I	TECTA	SNP	Silent	11	121000388	G	A	39	51
BRCA	TCGA-E2-A15I	RPH3A	SNP	Silent	12	113307580	G	A	41	51
BRCA	TCGA-E2-A15I	KLHL1	SNP	Splice_Site	13	70281929	C	T	32	87
BRCA	TCGA-E2-A15I	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-E2-A15I	RYR3	SNP	Silent	15	33923486	G	T	46	48
BRCA	TCGA-E2-A15I	LPO	SNP	Nonsense_Mutation	17	56332273	C	T	29	70
BRCA	TCGA-E2-A15I	SHKBP1	SNP	Missense_Mutation	19	41092756	G	T	33	65
BRCA	TCGA-E2-A15I	IGFL3	SNP	Silent	19	46627331	G	A	34	49
BRCA	TCGA-E2-A15I	XIRP2	SNP	Silent	2	168115717	A	G	5	50
BRCA	TCGA-E2-A15I	DNAJB2	SNP	Silent	2	220144582	C	T	19	48
BRCA	TCGA-E2-A15I	CHRND	DEL	Frame_Shift_Del	2	233399890	G	-	48	52
BRCA	TCGA-E2-A15I	SLC35A2	SNP	Missense_Mutation	23	48762371	C	A	21	80
BRCA	TCGA-E2-A15I	SYP	SNP	Missense_Mutation	23	49050648	C	T	31	78
BRCA	TCGA-E2-A15I	DNAH12	SNP	Missense_Mutation	3	57414077	T	C	63	55
BRCA	TCGA-E2-A15I	NDST1	SNP	Silent	5	149915315	C	T	27	47
BRCA	TCGA-E2-A15I	GABRA6	SNP	Missense_Mutation	5	161116743	A	C	12	65
BRCA	TCGA-E2-A15I	RXFP3	SNP	Silent	5	33937028	G	A	38	48
BRCA	TCGA-E2-A15I	HDDC2	SNP	Missense_Mutation	6	125598352	A	T	1	74
BRCA	TCGA-E2-A15I	GRM3	SNP	Missense_Mutation	7	86493622	C	T	19	90
BRCA	TCGA-E2-A15J	GPATCH2	SNP	Missense_Mutation	1	217783712	C	A	30	77
BRCA	TCGA-E2-A15J	HNRNPR	SNP	Missense_Mutation	1	23637492	C	A	21	87
BRCA	TCGA-E2-A15J	CHD5	SNP	Missense_Mutation	1	6202309	G	A	38	96
BRCA	TCGA-E2-A15J	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-E2-A15J	BET1L	SNP	Nonsense_Mutation	11	205996	G	A	38	82
BRCA	TCGA-E2-A15J	DCHS1	SNP	Missense_Mutation	11	6645350	G	C	36	55
BRCA	TCGA-E2-A15J	LRP1	SNP	Missense_Mutation	12	57548459	G	A	38	93
BRCA	TCGA-E2-A15J	FOXJ2	SNP	Missense_Mutation	12	8203193	A	G	10	71
BRCA	TCGA-E2-A15J	FEM1B	SNP	Silent	15	68582869	T	A	64	50
BRCA	TCGA-E2-A15J	PYCARD	SNP	Nonsense_Mutation	16	31213061	G	A	46	71
BRCA	TCGA-E2-A15J	NCOR1	DEL	Splice_Site	17	16012215	TTTTCGTGAAGTC	-	60	54
BRCA	TCGA-E2-A15J	AKAP1	SNP	Silent	17	55183677	G	A	39	52
BRCA	TCGA-E2-A15J	USP36	SNP	Missense_Mutation	17	76803588	G	A	41	54
BRCA	TCGA-E2-A15J	GAA	SNP	Missense_Mutation	17	78079665	G	A	40	60
BRCA	TCGA-E2-A15J	JAK3	SNP	Silent	19	17945965	C	T	24	52
BRCA	TCGA-E2-A15J	LTBP4	SNP	Missense_Mutation	19	41113324	G	A	39	76
BRCA	TCGA-E2-A15J	INSIG2	SNP	Missense_Mutation	2	118860893	G	A	36	100
BRCA	TCGA-E2-A15J	ADA	SNP	Silent	20	43255195	C	T	32	68
BRCA	TCGA-E2-A15J	RAB9B	SNP	Missense_Mutation	23	103080672	C	A	29	92
BRCA	TCGA-E2-A15J	VGLL4	SNP	Nonsense_Mutation	3	11684952	A	T	5	87
BRCA	TCGA-E2-A15J	CNTN6	SNP	Missense_Mutation	3	1414040	T	C	49	77
BRCA	TCGA-E2-A15J	COL8A1	SNP	Missense_Mutation	3	99513227	G	T	44	96
BRCA	TCGA-E2-A15J	RIMS2	SNP	Missense_Mutation	8	104948831	T	G	51	90
BRCA	TCGA-E2-A15J	VAV2	SNP	Missense_Mutation	9	136634607	T	C	60	57
BRCA	TCGA-E2-A15K	SLC16A1	SNP	Missense_Mutation	1	113456766	C	T	30	82
BRCA	TCGA-E2-A15K	LOC440563	SNP	Silent	1	13183591	G	A	40	31
BRCA	TCGA-E2-A15K	FMN2	SNP	Silent	1	240370374	G	A	46	42
BRCA	TCGA-E2-A15K	IPO13	SNP	Missense_Mutation	1	44426575	G	T	48	100
BRCA	TCGA-E2-A15K	PIK3R3	SNP	Missense_Mutation	1	46512262	A	C	7	91
BRCA	TCGA-E2-A15K	FGFR2	SNP	Missense_Mutation	10	123258034	A	T	12	55
BRCA	TCGA-E2-A15K	MLLT10	SNP	Nonsense_Mutation	10	21827779	C	T	29	100
BRCA	TCGA-E2-A15K	AMICA1	SNP	Missense_Mutation	11	118081378	C	T	27	58
BRCA	TCGA-E2-A15K	OR8D1	SNP	Missense_Mutation	11	124180566	C	T	22	52
BRCA	TCGA-E2-A15K	OR51E2	SNP	Missense_Mutation	11	4703745	G	C	46	83
BRCA	TCGA-E2-A15K	GCN1L1	SNP	Silent	12	120602272	C	A	25	53
BRCA	TCGA-E2-A15K	BCAT1	SNP	Missense_Mutation	12	24982785	C	T	27	76
BRCA	TCGA-E2-A15K	KRT82	SNP	Missense_Mutation	12	52797575	C	T	23	77
BRCA	TCGA-E2-A15K	NFATC4	DEL	Frame_Shift_Del	14	24845738	C	-	30	65
BRCA	TCGA-E2-A15K	ZSCAN2	SNP	Missense_Mutation	15	85164438	G	A	37	59
BRCA	TCGA-E2-A15K	MAZ	SNP	Missense_Mutation	16	29821425	C	T	27	64
BRCA	TCGA-E2-A15K	ALOX12B	SNP	Missense_Mutation	17	7989371	C	T	21	47
BRCA	TCGA-E2-A15K	MYH10	SNP	Missense_Mutation	17	8415888	C	G	25	77
BRCA	TCGA-E2-A15K	MBD1	SNP	Missense_Mutation	18	47802228	G	A	40	59
BRCA	TCGA-E2-A15K	DOT1L	SNP	Missense_Mutation	19	2213589	C	G	21	92
BRCA	TCGA-E2-A15K	ZNF675	SNP	Nonsense_Mutation	19	23837311	T	A	63	56
BRCA	TCGA-E2-A15K	ZNF829	DEL	In_Frame_Del	19	37382643	CTT	-	28	49
BRCA	TCGA-E2-A15K	LGALS4	SNP	Missense_Mutation	19	39292540	C	T	27	69
BRCA	TCGA-E2-A15K	TRIP10	SNP	Missense_Mutation	19	6751237	G	A	39	57
BRCA	TCGA-E2-A15K	BCL2L11	SNP	Missense_Mutation	2	111907761	C	T	18	53
BRCA	TCGA-E2-A15K	FN1	SNP	Missense_Mutation	2	216288147	C	A	32	88
BRCA	TCGA-E2-A15K	ATAD2B	SNP	Missense_Mutation	2	24118722	C	A	31	84
BRCA	TCGA-E2-A15K	DSCAM	SNP	Silent	21	41719610	C	T	24	51
BRCA	TCGA-E2-A15K	TIMP3	SNP	Silent	22	33245467	G	A	34	74
BRCA	TCGA-E2-A15K	DMD	SNP	Missense_Mutation	23	32591673	T	G	52	63
BRCA	TCGA-E2-A15K	SSX3	SNP	Splice_site	23	48214616	C	A	24	59
BRCA	TCGA-E2-A15K	NAALADL2	SNP	Splice_site	3	175189546	G	T	35	72
BRCA	TCGA-E2-A15K	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A15K	CRTAP	SNP	Missense_Mutation	3	33175699	C	T	18	96
BRCA	TCGA-E2-A15K	TRAK1	SNP	Missense_Mutation	3	42230525	C	T	31	76
BRCA	TCGA-E2-A15K	MAGI1	SNP	Missense_Mutation	3	65346921	C	T	32	72
BRCA	TCGA-E2-A15K	DNAH5	SNP	Silent	5	13759060	G	A	41	56
BRCA	TCGA-E2-A15K	CCNB1	SNP	Missense_Mutation	5	68470891	G	T	44	79
BRCA	TCGA-E2-A15K	L3MBTL3	SNP	Missense_Mutation	6	130407393	A	G	1	85
BRCA	TCGA-E2-A15K	MLIP	SNP	Silent	6	53883886	G	T	45	59
BRCA	TCGA-E2-A15K	PIWIL2	INS	Frame_Shift_Ins	8	22146119	-	A	17	82
BRCA	TCGA-E2-A15K	CTNNAL1	SNP	Missense_Mutation	9	111735100	G	T	38	97
BRCA	TCGA-E2-A15L	GPSM2	SNP	Missense_Mutation	1	109466799	C	A	28	75
BRCA	TCGA-E2-A15L	RYR2	SNP	Missense_Mutation	1	237947353	G	A	37	100
BRCA	TCGA-E2-A15L	UNC5B	SNP	Missense_Mutation	10	73039667	G	A	38	97
BRCA	TCGA-E2-A15L	TMEM132B	SNP	Missense_Mutation	12	126137027	C	T	19	100
BRCA	TCGA-E2-A15L	FMNL3	SNP	Missense_Mutation	12	50045069	C	T	31	80
BRCA	TCGA-E2-A15L	NIN	SNP	Missense_Mutation	14	51237222	C	G	32	96
BRCA	TCGA-E2-A15L	CCNK	SNP	Missense_Mutation	14	99968624	A	G	1	80
BRCA	TCGA-E2-A15L	TAOK2	SNP	Missense_Mutation	16	29994166	A	T	12	76
BRCA	TCGA-E2-A15L	RRAD	SNP	Missense_Mutation	16	66957813	T	C	49	85
BRCA	TCGA-E2-A15L	MEX3C	SNP	Silent	18	48723154	G	C	39	58
BRCA	TCGA-E2-A15L	PRKACA	SNP	Missense_Mutation	19	14213716	A	G	7	89
BRCA	TCGA-E2-A15L	PCSK4	SNP	Silent	19	1482437	C	T	23	45
BRCA	TCGA-E2-A15L	CIB3	SNP	Missense_Mutation	19	16279058	G	C	33	81
BRCA	TCGA-E2-A15L	RPS16	SNP	Missense_Mutation	19	39926258	G	C	34	68
BRCA	TCGA-E2-A15L	CCDC8	SNP	Silent	19	46915828	C	T	30	59
BRCA	TCGA-E2-A15L	FOSL2	SNP	Missense_Mutation	2	28631710	G	C	41	100
BRCA	TCGA-E2-A15L	CCDC142	SNP	Missense_Mutation	2	74709370	A	C	10	54
BRCA	TCGA-E2-A15L	PTPRA	SNP	Missense_Mutation	20	3016449	G	A	39	100
BRCA	TCGA-E2-A15L	ACE2	SNP	Nonsense_Mutation	23	15610358	C	A	29	92
BRCA	TCGA-E2-A15L	FAM47C	SNP	Missense_Mutation	23	37026638	C	T	19	17
BRCA	TCGA-E2-A15L	LOC100129144	SNP	Silent	23	66594453	C	T	27	41
BRCA	TCGA-E2-A15L	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A15L	DNAH1	SNP	Missense_Mutation	3	52430731	A	G	16	89
BRCA	TCGA-E2-A15L	PRICKLE2	SNP	Nonsense_Mutation	3	64133124	C	A	30	86
BRCA	TCGA-E2-A15L	DMXL1	SNP	Missense_Mutation	5	118480270	G	A	33	66
BRCA	TCGA-E2-A15L	NLN	SNP	Silent	5	65088425	C	T	19	49
BRCA	TCGA-E2-A15L	GRHL2	SNP	Missense_Mutation	8	102571029	G	A	38	81
BRCA	TCGA-E2-A15L	OXR1	SNP	Missense_Mutation	8	107715146	G	A	47	100
BRCA	TCGA-E2-A15L	MSMP	SNP	Missense_Mutation	9	35753714	C	T	27	79
BRCA	TCGA-E2-A15M	TAS1R2	SNP	Missense_Mutation	1	19186120	A	T	9	52
BRCA	TCGA-E2-A15M	CRB1	SNP	Missense_Mutation	1	197397057	C	T	30	50
BRCA	TCGA-E2-A15M	CR1	SNP	Missense_Mutation	1	207753648	C	T	29	53
BRCA	TCGA-E2-A15M	OR2M5	SNP	Missense_Mutation	1	248308750	A	G	4	55
BRCA	TCGA-E2-A15M	OR2T3	SNP	Missense_Mutation	1	248637013	C	A	28	52
BRCA	TCGA-E2-A15M	SORCS1	SNP	Missense_Mutation	10	108434901	C	T	29	86
BRCA	TCGA-E2-A15M	RPP30	SNP	Missense_Mutation	10	92638822	A	T	11	67
BRCA	TCGA-E2-A15M	OR9G4	SNP	Missense_Mutation	11	56510936	A	G	1	72
BRCA	TCGA-E2-A15M	OR56A1	SNP	Silent	11	6048719	G	C	41	38
BRCA	TCGA-E2-A15M	C11orf84	SNP	Silent	11	63585290	G	A	33	49
BRCA	TCGA-E2-A15M	ACACB	SNP	Missense_Mutation	12	109577236	G	T	48	58
BRCA	TCGA-E2-A15M	TBX3	SNP	Missense_Mutation	12	115114129	G	C	37	78
BRCA	TCGA-E2-A15M	KSR2	SNP	Silent	12	118293372	G	A	39	0
BRCA	TCGA-E2-A15M	IPO8	SNP	Silent	12	30823923	G	T	35	49
BRCA	TCGA-E2-A15M	WNK1	SNP	Missense_Mutation	12	977510	C	T	29	68
BRCA	TCGA-E2-A15M	DCT	DEL	Frame_Shift_Del	13	95114308	CTTCTGGAGAG	-	20	58
BRCA	TCGA-E2-A15M	MIA2	SNP	Missense_Mutation	14	39722059	G	A	37	59
BRCA	TCGA-E2-A15M	KCNH5	SNP	Silent	14	63174802	G	A	45	58
BRCA	TCGA-E2-A15M	ENSG00000181984	SNP	Missense_Mutation	15	20771933	C	T	19	57
BRCA	TCGA-E2-A15M	GOLGA6L2	SNP	Missense_Mutation	15	23685871	C	T	31	NaN
BRCA	TCGA-E2-A15M	ENSG00000233556	SNP	Missense_Mutation	15	35385282	C	T	29	52
BRCA	TCGA-E2-A15M	TRPM7	SNP	Missense_Mutation	15	50905926	G	C	48	98
BRCA	TCGA-E2-A15M	PLIN1	SNP	Silent	15	90210242	C	G	30	45
BRCA	TCGA-E2-A15M	BFAR	SNP	Missense_Mutation	16	14738316	A	C	14	90
BRCA	TCGA-E2-A15M	CIRH1A	SNP	Missense_Mutation	16	69202749	A	C	12	63
BRCA	TCGA-E2-A15M	IFI35	DEL	Frame_Shift_Del	17	41158967	G	-	48	60
BRCA	TCGA-E2-A15M	ZNF652	SNP	Missense_Mutation	17	47376040	A	G	6	54
BRCA	TCGA-E2-A15M	TP53	SNP	Missense_Mutation	17	7578542	G	C	35	75
BRCA	TCGA-E2-A15M	ACAA2	SNP	Missense_Mutation	18	47329199	C	A	31	100
BRCA	TCGA-E2-A15M	EPOR	SNP	Missense_Mutation	19	11493879	C	T	32	53
BRCA	TCGA-E2-A15M	ZNF540	SNP	Missense_Mutation	19	38102566	G	C	45	48
BRCA	TCGA-E2-A15M	SIGLEC9	SNP	Missense_Mutation	19	51629007	C	T	18	46
BRCA	TCGA-E2-A15M	NLRP7	SNP	Missense_Mutation	19	55450823	C	T	27	50
BRCA	TCGA-E2-A15M	FBN3	SNP	Silent	19	8191185	G	A	38	48
BRCA	TCGA-E2-A15M	MUC16	SNP	Missense_Mutation	19	9076968	A	G	16	46
BRCA	TCGA-E2-A15M	FN1	SNP	Missense_Mutation	2	216262561	C	G	31	67
BRCA	TCGA-E2-A15M	PER2	SNP	Missense_Mutation	2	239164504	G	A	38	46
BRCA	TCGA-E2-A15M	KIF3C	SNP	Silent	2	26204304	C	T	23	34
BRCA	TCGA-E2-A15M	FBXO41	SNP	Missense_Mutation	2	73487592	C	T	30	92
BRCA	TCGA-E2-A15M	LAMA5	SNP	Nonsense_Mutation	20	60889977	G	A	47	61
BRCA	TCGA-E2-A15M	ISX	SNP	Silent	22	35478527	G	A	34	50
BRCA	TCGA-E2-A15M	ATG4A	DEL	Frame_Shift_Del	23	107396915	G	-	35	59
BRCA	TCGA-E2-A15M	DMD	DEL	Frame_Shift_Del	23	31525555	T	-	52	70
BRCA	TCGA-E2-A15M	WDR13	SNP	Missense_Mutation	23	48458901	A	G	6	72
BRCA	TCGA-E2-A15M	GPR149	SNP	Silent	3	154138885	T	C	60	56
BRCA	TCGA-E2-A15M	ENSG00000214210	SNP	Nonsense_Mutation	3	163719429	G	A	38	32
BRCA	TCGA-E2-A15M	ECT2	SNP	Splice_Site	3	172520404	A	G	7	88
BRCA	TCGA-E2-A15M	CCDC66	SNP	Missense_Mutation	3	56653393	G	A	33	72
BRCA	TCGA-E2-A15M	CRYBG3	SNP	Missense_Mutation	3	97607255	G	C	45	81
BRCA	TCGA-E2-A15M	CENPE	SNP	Missense_Mutation	4	104084638	C	G	29	59
BRCA	TCGA-E2-A15M	SCLT1	SNP	Silent	4	129964598	C	T	20	56
BRCA	TCGA-E2-A15M	PALLD	SNP	Missense_Mutation	4	169433082	C	T	27	63
BRCA	TCGA-E2-A15M	GPR125	SNP	Silent	4	22390713	G	C	35	47
BRCA	TCGA-E2-A15M	FAM114A1	SNP	Missense_Mutation	4	38910268	C	A	18	100
BRCA	TCGA-E2-A15M	UGT2B11	SNP	Missense_Mutation	4	69870734	C	T	31	85
BRCA	TCGA-E2-A15M	BRD8	SNP	Splice_Site	5	137480865	C	T	18	77
BRCA	TCGA-E2-A15M	LCP2	SNP	Missense_Mutation	5	169697879	C	T	30	77
BRCA	TCGA-E2-A15M	C7	SNP	Splice_Site	5	40936438	A	T	7	81
BRCA	TCGA-E2-A15M	ITGA1	SNP	Silent	5	52243219	A	T	8	47
BRCA	TCGA-E2-A15M	CMYA5	SNP	Missense_Mutation	5	79032493	C	A	30	53
BRCA	TCGA-E2-A15M	TTBK1	SNP	Silent	6	43225687	G	A	33	65
BRCA	TCGA-E2-A15M	DSP	SNP	Missense_Mutation	6	7583848	G	C	33	69
BRCA	TCGA-E2-A15M	FLNC	SNP	Silent	7	128491585	C	A	23	34
BRCA	TCGA-E2-A15M	AGK	SNP	Missense_Mutation	7	141296374	C	G	29	86
BRCA	TCGA-E2-A15M	HOXA5	SNP	Missense_Mutation	7	27182735	G	T	38	66
BRCA	TCGA-E2-A15M	POU6F2	SNP	Silent	7	39379419	C	T	23	43
BRCA	TCGA-E2-A15M	HECW1	SNP	Missense_Mutation	7	43351515	G	A	40	66
BRCA	TCGA-E2-A15M	ASL	SNP	Missense_Mutation	7	65551616	C	T	26	80
BRCA	TCGA-E2-A15M	LRP12	SNP	Missense_Mutation	8	105509599	C	T	19	98
BRCA	TCGA-E2-A15M	EIF2C2	SNP	Missense_Mutation	8	141549423	T	A	54	91
BRCA	TCGA-E2-A15M	FBXL6	DEL	Splice_Site	8	145580359	GGGGCAGCAGCTGCCCTGCAGA	-	43	39
BRCA	TCGA-E2-A15M	HEY1	SNP	Silent	8	80679523	C	T	29	78
BRCA	TCGA-E2-A15M	FBXW2	SNP	Missense_Mutation	9	123550286	G	C	33	82
BRCA	TCGA-E2-A15M	PPAPDC3	SNP	Missense_Mutation	9	134165688	C	T	23	59
BRCA	TCGA-E2-A15M	RAPGEF1	SNP	Missense_Mutation	9	134514093	C	T	19	80
BRCA	TCGA-E2-A15M	FBXO10	SNP	Silent	9	37537587	G	A	37	37
BRCA	TCGA-E2-A15O	UBE4B	SNP	Missense_Mutation	1	10205077	C	T	27	83
BRCA	TCGA-E2-A15O	MTOR	SNP	Missense_Mutation	1	11188177	T	A	51	90
BRCA	TCGA-E2-A15O	OR10K1	SNP	Missense_Mutation	1	158435388	G	A	40	49
BRCA	TCGA-E2-A15O	COPA	SNP	Missense_Mutation	1	160261650	G	C	34	62
BRCA	TCGA-E2-A15O	SOAT1	SNP	Missense_Mutation	1	179310278	C	T	17	59
BRCA	TCGA-E2-A15O	ECE1	SNP	Missense_Mutation	1	21546502	G	C	41	61
BRCA	TCGA-E2-A15O	SLC35F3	SNP	Silent	1	234367371	C	T	19	50
BRCA	TCGA-E2-A15O	TACSTD2	SNP	Missense_Mutation	1	59042071	A	C	6	80
BRCA	TCGA-E2-A15O	PLEKHG5	DEL	Frame_Shift_Del	1	6529190	CC	-	30	58
BRCA	TCGA-E2-A15O	RBM19	SNP	Missense_Mutation	12	114386694	C	A	23	90
BRCA	TCGA-E2-A15O	NEK5	SNP	Missense_Mutation	13	52684534	T	C	53	74
BRCA	TCGA-E2-A15O	SERPINA5	SNP	Missense_Mutation	14	95053768	C	A	18	51
BRCA	TCGA-E2-A15O	MEF2A	DEL	Frame_Shift_Del	15	100173343	CAAAT	-	17	80
BRCA	TCGA-E2-A15O	GOLGA6L2	SNP	Silent	15	23685786	G	A	40	54
BRCA	TCGA-E2-A15O	GPR179	SNP	Missense_Mutation	17	36491508	T	C	51	62
BRCA	TCGA-E2-A15O	GRB7	SNP	Missense_Mutation	17	37899253	G	A	38	76
BRCA	TCGA-E2-A15O	ACLY	SNP	Splice_Site	17	40042364	C	T	18	97
BRCA	TCGA-E2-A15O	ENSG00000237368	INS	Frame_Shift_Ins	18	14156653	-	A	25	74
BRCA	TCGA-E2-A15O	ZNF492	SNP	Silent	19	22847203	G	A	33	59
BRCA	TCGA-E2-A15O	LRRC4B	SNP	Silent	19	51021653	C	A	31	52
BRCA	TCGA-E2-A15O	LOC100288469	SNP	Splice_Site	19	7570384	C	A	18	51
BRCA	TCGA-E2-A15O	KISS1R	SNP	Silent	19	918593	C	T	29	68
BRCA	TCGA-E2-A15O	SLC40A1	SNP	Missense_Mutation	2	190428601	G	A	37	80
BRCA	TCGA-E2-A15O	LOXL3	SNP	Missense_Mutation	2	74762803	C	A	26	95
BRCA	TCGA-E2-A15O	KIAA1755	SNP	Missense_Mutation	20	36869418	G	A	41	77
BRCA	TCGA-E2-A15O	CABIN1	DEL	Frame_Shift_Del	22	24463095	C	-	30	96
BRCA	TCGA-E2-A15O	MAGEB1	SNP	Silent	23	30268880	T	C	51	44
BRCA	TCGA-E2-A15O	STAG1	SNP	Missense_Mutation	3	136078054	G	A	37	67
BRCA	TCGA-E2-A15O	MCCC1	INS	Splice_site	3	182817227	-	T	8	60
BRCA	TCGA-E2-A15O	MUC4	SNP	Silent	3	195509202	T	G	55	45
BRCA	TCGA-E2-A15O	HMGB2	SNP	Missense_Mutation	4	174254765	T	A	64	48
BRCA	TCGA-E2-A15O	PCDHA3	SNP	Missense_Mutation	5	140182767	C	T	19	83
BRCA	TCGA-E2-A15O	TCOF1	SNP	Missense_Mutation	5	149773041	C	T	26	51
BRCA	TCGA-E2-A15O	HNRNPH1	SNP	Missense_Mutation	5	179044055	A	T	13	75
BRCA	TCGA-E2-A15O	BTNL8	SNP	Missense_Mutation	5	180377233	G	A	40	49
BRCA	TCGA-E2-A15O	MAP3K1	DEL	Frame_Shift_Del	5	56160578	CA	-	29	62
BRCA	TCGA-E2-A15O	CAST	SNP	Missense_Mutation	5	96077234	A	T	10	47
BRCA	TCGA-E2-A15O	CHD1	SNP	Silent	5	98236686	T	G	56	67
BRCA	TCGA-E2-A15O	CUL7	DEL	Frame_Shift_Del	6	43014812	G	-	35	79
BRCA	TCGA-E2-A15O	CUL7	DEL	Frame_Shift_Del	6	43014815	GGTGCAGG	-	39	86
BRCA	TCGA-E2-A15O	C7orf23	SNP	Silent	7	86825961	C	T	21	78
BRCA	TCGA-E2-A15O	FER1L6	SNP	Splice_Site	8	125047696	G	T	44	93
BRCA	TCGA-E2-A15P	WDR47	SNP	Missense_Mutation	1	109525305	C	T	30	96
BRCA	TCGA-E2-A15P	PRDM2	DEL	In_Frame_Del	1	14107659	TGT	-	51	52
BRCA	TCGA-E2-A15P	LEPRE1	DEL	Frame_Shift_Del	1	43212402	GA	-	45	57
BRCA	TCGA-E2-A15P	DBX1	SNP	Silent	11	20177994	G	A	38	56
BRCA	TCGA-E2-A15P	ABTB2	SNP	Silent	11	34194815	G	A	38	32
BRCA	TCGA-E2-A15P	LPXN	SNP	Splice_site	11	58345493	G	A	39	46
BRCA	TCGA-E2-A15P	SLC35E3	DEL	In_Frame_Del	12	69140514	CTT	-	24	55
BRCA	TCGA-E2-A15P	TTC7B	SNP	Missense_Mutation	14	91007788	T	G	54	92
BRCA	TCGA-E2-A15P	TTC7B	SNP	Missense_Mutation	14	91007891	T	G	62	93
BRCA	TCGA-E2-A15P	TMEM87A	SNP	Missense_Mutation	15	42529656	T	C	55	93
BRCA	TCGA-E2-A15P	DNAJA4	DEL	Frame_Shift_Del	15	78572663	AAGT	-	1	71
BRCA	TCGA-E2-A15P	SUZ12	DEL	Frame_Shift_Del	17	30267462	CTTA	-	32	95
BRCA	TCGA-E2-A15P	PHLDB3	DEL	In_Frame_Del	19	44008096	CTT	-	20	74
BRCA	TCGA-E2-A15P	MYO3B	SNP	Silent	2	171240240	G	A	43	50
BRCA	TCGA-E2-A15P	SP3	DEL	Frame_Shift_Del	2	174819671	TGTT	-	55	56
BRCA	TCGA-E2-A15P	RTN4	DEL	Frame_Shift_Del	2	55214698	CA	-	29	64
BRCA	TCGA-E2-A15P	TIA1	DEL	Splice_site	2	70475537	AG	-	7	84
BRCA	TCGA-E2-A15P	SEMA4F	DEL	In_Frame_Del	2	74900877	CTT	-	20	58
BRCA	TCGA-E2-A15P	ZNF2	SNP	Silent	2	95847302	G	A	40	21
BRCA	TCGA-E2-A15P	CRYZL1	SNP	Missense_Mutation	21	34968081	T	C	50	84
BRCA	TCGA-E2-A15P	RIPK4	SNP	Missense_Mutation	21	43187137	A	T	9	80
BRCA	TCGA-E2-A15P	PASD1	SNP	Missense_Mutation	23	150832809	G	A	38	29
BRCA	TCGA-E2-A15P	TBL1XR1	DEL	In_Frame_Del	3	176756187	TGT	-	59	89
BRCA	TCGA-E2-A15P	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-E2-A15P	DLG1	DEL	In_Frame_Del	3	196846394	AGA	-	11	60
BRCA	TCGA-E2-A15P	EPM2AIP1	DEL	In_Frame_Del	3	37033943	AGA	-	7	86
BRCA	TCGA-E2-A15P	KBTBD8	DEL	In_Frame_Del	3	67058478	ATC	-	4	89
BRCA	TCGA-E2-A15P	C3orf38	DEL	In_Frame_Del	3	88205221	AGA	-	11	51
BRCA	TCGA-E2-A15P	ZNF518B	SNP	Missense_Mutation	4	10445214	A	C	12	47
BRCA	TCGA-E2-A15P	ZNF300	SNP	Missense_Mutation	5	150275009	T	A	52	71
BRCA	TCGA-E2-A15P	BRIX1	SNP	Missense_Mutation	5	34925580	G	T	41	58
BRCA	TCGA-E2-A15P	COL4A3BP	DEL	In_Frame_Del	5	74706907	TTC	-	60	48
BRCA	TCGA-E2-A15P	TAS2R3	DEL	In_Frame_Del	7	141464672	CTT	-	24	57
BRCA	TCGA-E2-A15P	ADCY1	SNP	Missense_Mutation	7	45753497	C	T	22	84
BRCA	TCGA-E2-A15P	CYP3A7	SNP	Missense_Mutation	7	99306769	A	G	2	63
BRCA	TCGA-E2-A15P	CYP3A4	DEL	In_Frame_Del	7	99358590	TTC	-	60	59
BRCA	TCGA-E2-A15P	SQLE	DEL	In_Frame_Del	8	126030304	TTC	-	60	92
BRCA	TCGA-E2-A15P	NUDT18	DEL	Frame_Shift_Del	8	21965179	CTGT	-	20	55
BRCA	TCGA-E2-A15P	ENTPD2	SNP	Missense_Mutation	9	139943179	G	A	41	60
BRCA	TCGA-E2-A15R	SCNN1D	SNP	Splice_site	1	1222976	G	A	39	52
BRCA	TCGA-E2-A15R	DCAF8	SNP	Missense_Mutation	1	160210035	G	A	39	67
BRCA	TCGA-E2-A15R	TEX35	SNP	Missense_Mutation	1	178490396	C	T	31	57
BRCA	TCGA-E2-A15R	ELF3	SNP	Missense_Mutation	1	201980286	A	G	15	69
BRCA	TCGA-E2-A15R	TRIM58	SNP	Missense_Mutation	1	248039412	G	A	43	92
BRCA	TCGA-E2-A15R	OPRD1	SNP	Missense_Mutation	1	29189481	G	A	38	77
BRCA	TCGA-E2-A15R	RNF207	SNP	Missense_Mutation	1	6271954	G	A	38	49
BRCA	TCGA-E2-A15R	PCGF5	SNP	Missense_Mutation	10	93021117	G	A	40	98
BRCA	TCGA-E2-A15R	ARHGEF12	SNP	Missense_Mutation	11	120351050	A	T	12	80
BRCA	TCGA-E2-A15R	CSNK1A1L	SNP	Missense_Mutation	13	37678978	G	T	47	79
BRCA	TCGA-E2-A15R	FKBP3	SNP	Silent	14	45590698	A	G	16	58
BRCA	TCGA-E2-A15R	GCH1	SNP	Missense_Mutation	14	55369216	C	T	31	55
BRCA	TCGA-E2-A15R	DCI	SNP	Silent	16	2301520	G	C	38	45
BRCA	TCGA-E2-A15R	SLC4A1	SNP	Missense_Mutation	17	42330650	G	T	42	52
BRCA	TCGA-E2-A15R	MTMR4	SNP	Missense_Mutation	17	56569882	G	A	48	95
BRCA	TCGA-E2-A15R	DEDD2	SNP	Silent	19	42703632	C	T	29	61
BRCA	TCGA-E2-A15R	LRRC8E	SNP	Silent	19	7964376	C	T	19	34
BRCA	TCGA-E2-A15R	ZNF699	DEL	Frame_Shift_Del	19	9407034	T	-	59	52
BRCA	TCGA-E2-A15R	ARHGAP15	SNP	Missense_Mutation	2	144193247	C	G	29	86
BRCA	TCGA-E2-A15R	ADD2	SNP	Missense_Mutation	2	70923448	A	G	6	84
BRCA	TCGA-E2-A15R	BPIFB6	SNP	Silent	20	31631125	G	A	39	37
BRCA	TCGA-E2-A15R	DLGAP4	SNP	Missense_Mutation	20	35064600	G	A	38	78
BRCA	TCGA-E2-A15R	WDR4	SNP	Silent	21	44279796	G	A	39	26
BRCA	TCGA-E2-A15R	ZIC3	SNP	Silent	23	136649808	C	A	23	64
BRCA	TCGA-E2-A15R	ARSF	SNP	Silent	23	3030432	C	T	19	43
BRCA	TCGA-E2-A15R	CXCR3	SNP	Missense_Mutation	23	70836846	A	T	11	84
BRCA	TCGA-E2-A15R	WNT7A	SNP	Missense_Mutation	3	13860569	A	T	6	88
BRCA	TCGA-E2-A15R	CADPS	SNP	Missense_Mutation	3	62467428	G	A	39	98
BRCA	TCGA-E2-A15R	OTUD4	SNP	Nonsense_Mutation	4	146062555	G	A	45	65
BRCA	TCGA-E2-A15R	RGS12	SNP	Silent	4	3441258	C	G	23	47
BRCA	TCGA-E2-A15R	PHF15	SNP	Missense_Mutation	5	133902109	G	A	37	100
BRCA	TCGA-E2-A15R	POU5F2	SNP	Missense_Mutation	5	93077199	G	A	39	59
BRCA	TCGA-E2-A15R	KIFC1	SNP	Missense_Mutation	6	33374648	C	T	30	76
BRCA	TCGA-E2-A15R	ENSG00000214666	SNP	Silent	6	44240764	C	T	30	52
BRCA	TCGA-E2-A15R	TRBC2	SNP	Silent	7	142498959	G	A	38	66
BRCA	TCGA-E2-A15R	NOM1	SNP	Missense_Mutation	7	156742517	G	A	43	65
BRCA	TCGA-E2-A15R	NFE2L3	INS	Frame_Shift_Ins	7	26225181	-	AA	33	52
BRCA	TCGA-E2-A15R	ASAH1	SNP	Missense_Mutation	8	17941525	C	A	27	53
BRCA	TCGA-E2-A15R	KCTD9	SNP	Missense_Mutation	8	25292958	A	G	13	90
BRCA	TCGA-E2-A15R	ASPH	SNP	Missense_Mutation	8	62555969	C	T	32	59
BRCA	TCGA-E2-A15R	OR13D1	SNP	Nonsense_Mutation	9	107457129	G	T	45	86
BRCA	TCGA-E2-A15R	OR1N1	SNP	Missense_Mutation	9	125288840	C	T	19	70
BRCA	TCGA-E2-A15R	PRRC2B	SNP	Missense_Mutation	9	134354682	G	A	37	94
BRCA	TCGA-E2-A15R	SIGMAR1	SNP	Missense_Mutation	9	34635777	C	T	23	81
BRCA	TCGA-E2-A15S	THEM5	SNP	Missense_Mutation	1	151823599	A	G	3	75
BRCA	TCGA-E2-A15S	UCK2	SNP	Silent	1	165859581	G	A	36	63
BRCA	TCGA-E2-A15S	HMCN1	SNP	Splice_site	1	185984569	G	C	47	80
BRCA	TCGA-E2-A15S	PINK1	SNP	Missense_Mutation	1	20977053	T	G	64	40
BRCA	TCGA-E2-A15S	OR2T3	SNP	Silent	1	248636948	G	A	40	39
BRCA	TCGA-E2-A15S	PTGER3	SNP	Splice_site	1	71318542	C	G	30	56
BRCA	TCGA-E2-A15S	GHITM	SNP	Silent	10	85901316	T	G	56	45
BRCA	TCGA-E2-A15S	HTR3A	DEL	Frame_Shift_Del	11	113853915	CCCCT	-	26	100
BRCA	TCGA-E2-A15S	BTBD10	SNP	Missense_Mutation	11	13410404	G	A	41	65
BRCA	TCGA-E2-A15S	F2	SNP	Missense_Mutation	11	46744957	G	T	42	63
BRCA	TCGA-E2-A15S	TPCN2	SNP	Missense_Mutation	11	68825062	G	C	47	75
BRCA	TCGA-E2-A15S	KRTAP5-10	SNP	Missense_Mutation	11	71276905	A	C	3	56
BRCA	TCGA-E2-A15S	NFYB	SNP	Nonsense_Mutation	12	104519903	G	A	45	87
BRCA	TCGA-E2-A15S	C12orf39	SNP	Missense_Mutation	12	21679844	A	G	2	46
BRCA	TCGA-E2-A15S	LMBR1L	SNP	Missense_Mutation	12	49499717	T	C	63	92
BRCA	TCGA-E2-A15S	PIP4K2C	SNP	Missense_Mutation	12	57987825	G	T	35	64
BRCA	TCGA-E2-A15S	USPL1	SNP	Missense_Mutation	13	31232168	A	G	8	48
BRCA	TCGA-E2-A15S	ZWILCH	SNP	Missense_Mutation	15	66829513	A	C	8	56
BRCA	TCGA-E2-A15S	CTRB2	SNP	Missense_Mutation	16	75239875	G	T	47	97
BRCA	TCGA-E2-A15S	CHAD	SNP	Silent	17	48545782	G	A	44	76
BRCA	TCGA-E2-A15S	CYP2F1	SNP	Missense_Mutation	19	41627952	G	T	38	55
BRCA	TCGA-E2-A15S	TMEM91	SNP	Silent	19	41889743	C	T	24	64
BRCA	TCGA-E2-A15S	POU2F2	SNP	Missense_Mutation	19	42596350	C	T	22	57
BRCA	TCGA-E2-A15S	NLRP12	SNP	Silent	19	54312951	C	T	29	51
BRCA	TCGA-E2-A15S	SCN2A	DEL	Frame_Shift_Del	2	166179821	CT	-	20	58
BRCA	TCGA-E2-A15S	ABCB11	SNP	Missense_Mutation	2	169814622	A	C	6	55
BRCA	TCGA-E2-A15S	ANGPT4	SNP	Missense_Mutation	20	896760	C	T	25	64
BRCA	TCGA-E2-A15S	BID	DEL	Frame_Shift_Del	22	18222887	G	-	38	35
BRCA	TCGA-E2-A15S	SMC1B	SNP	Silent	22	45804622	G	A	38	43
BRCA	TCGA-E2-A15S	IGSF1	SNP	Nonsense_Mutation	23	130409100	G	T	48	72
BRCA	TCGA-E2-A15S	BCOR	SNP	Missense_Mutation	23	39937122	G	A	39	84
BRCA	TCGA-E2-A15S	SHROOM4	SNP	Missense_Mutation	23	50350476	G	C	36	48
BRCA	TCGA-E2-A15S	CCDC50	SNP	Missense_Mutation	3	191093245	A	T	1	56
BRCA	TCGA-E2-A15S	CTNNB1	SNP	Silent	3	41268806	T	A	55	49
BRCA	TCGA-E2-A15S	LTF	SNP	Silent	3	46501161	A	G	14	43
BRCA	TCGA-E2-A15S	DALRD3	SNP	Missense_Mutation	3	49053757	G	C	34	54
BRCA	TCGA-E2-A15S	CD38	SNP	Missense_Mutation	4	15818139	T	C	57	44
BRCA	TCGA-E2-A15S	BMP3	SNP	Missense_Mutation	4	81967479	C	T	28	85
BRCA	TCGA-E2-A15S	FAT2	SNP	Missense_Mutation	5	150905430	C	A	22	82
BRCA	TCGA-E2-A15S	FAT2	INS	In_Frame_Ins	5	150924167	-	TGGGCT	35	63
BRCA	TCGA-E2-A15S	FAT2	SNP	Silent	5	150924172	C	T	32	62
BRCA	TCGA-E2-A15S	MBOAT1	SNP	Missense_Mutation	6	20144468	G	A	45	52
BRCA	TCGA-E2-A15S	PGK2	SNP	Silent	6	49753845	G	T	47	51
BRCA	TCGA-E2-A15S	BMP6	SNP	Missense_Mutation	6	7845540	C	G	29	96
BRCA	TCGA-E2-A15S	PKD1L1	SNP	Missense_Mutation	7	47921536	C	T	31	43
BRCA	TCGA-E2-A15S	AK8	SNP	Missense_Mutation	9	135702351	G	T	34	63
BRCA	TCGA-E2-A15T	PALMD	SNP	Silent	1	100154698	G	A	47	45
BRCA	TCGA-E2-A15T	UBR4	SNP	Silent	1	19491831	T	C	57	56
BRCA	TCGA-E2-A15T	OBSCN	SNP	Silent	1	228444554	G	A	39	53
BRCA	TCGA-E2-A15T	FMN2	SNP	Missense_Mutation	1	240374531	A	G	1	87
BRCA	TCGA-E2-A15T	EIF2C1	SNP	Missense_Mutation	1	36359982	G	A	40	100
BRCA	TCGA-E2-A15T	PARD3	SNP	Missense_Mutation	10	34620061	A	T	8	43
BRCA	TCGA-E2-A15T	BCL9L	DEL	Frame_Shift_Del	11	118769652	G	-	37	50
BRCA	TCGA-E2-A15T	HYOU1	SNP	Missense_Mutation	11	118925916	C	A	17	97
BRCA	TCGA-E2-A15T	NTM	DEL	Frame_Shift_Del	11	132180029	A	-	5	68
BRCA	TCGA-E2-A15T	PTPN5	DEL	Frame_Shift_Del	11	18765723	C	-	30	59
BRCA	TCGA-E2-A15T	MADD	DEL	Frame_Shift_Del	11	47303974	G	-	35	58
BRCA	TCGA-E2-A15T	TBC1D10C	SNP	Missense_Mutation	11	67173127	G	A	40	81
BRCA	TCGA-E2-A15T	HECTD4	DEL	Frame_Shift_Del	12	112657218	G	-	47	99
BRCA	TCGA-E2-A15T	ANKRD52	DEL	Splice_Site	12	56651611	C	-	18	91
BRCA	TCGA-E2-A15T	FRY	SNP	Missense_Mutation	13	32869412	C	T	23	100
BRCA	TCGA-E2-A15T	PRPF39	SNP	Missense_Mutation	14	45566145	A	G	16	90
BRCA	TCGA-E2-A15T	SYNDIG1L	DEL	Frame_Shift_Del	14	74876345	G	-	47	90
BRCA	TCGA-E2-A15T	ANKRD34C	DEL	Frame_Shift_Del	15	79586581	A	-	9	65
BRCA	TCGA-E2-A15T	SYNM	SNP	Missense_Mutation	15	99672941	C	T	31	62
BRCA	TCGA-E2-A15T	CTCF	SNP	Nonsense_Mutation	16	67670628	G	T	45	87
BRCA	TCGA-E2-A15T	HAS3	DEL	Frame_Shift_Del	16	69148464	C	-	18	67
BRCA	TCGA-E2-A15T	FAM83G	DEL	Frame_Shift_Del	17	18891586	C	-	26	78
BRCA	TCGA-E2-A15T	CTC1	DEL	Frame_Shift_Del	17	8138378	C	-	26	51
BRCA	TCGA-E2-A15T	TRIP10	DEL	Frame_Shift_Del	19	6751229	C	-	26	66
BRCA	TCGA-E2-A15T	RGPD8	SNP	Missense_Mutation	2	113161599	A	T	4	65
BRCA	TCGA-E2-A15T	UGT1A6	SNP	Missense_Mutation	2	234601744	G	T	44	32
BRCA	TCGA-E2-A15T	PDCD1	SNP	Silent	2	242793270	G	A	40	42
BRCA	TCGA-E2-A15T	NFATC2	SNP	Silent	20	50048860	G	A	38	50
BRCA	TCGA-E2-A15T	LIF	SNP	Nonsense_Mutation	22	30639826	G	A	39	7
BRCA	TCGA-E2-A15T	GUCY2F	SNP	Missense_Mutation	23	108718516	C	A	22	89
BRCA	TCGA-E2-A15T	SHROOM4	SNP	Silent	23	50377366	C	T	26	46
BRCA	TCGA-E2-A15T	FANCD2	SNP	Missense_Mutation	3	10106486	C	T	24	65
BRCA	TCGA-E2-A15T	RETNLB	SNP	Missense_Mutation	3	108474726	C	T	21	75
BRCA	TCGA-E2-A15T	DRD3	SNP	Missense_Mutation	3	113890710	C	T	19	48
BRCA	TCGA-E2-A15T	SCN11A	SNP	Silent	3	38938447	G	A	41	53
BRCA	TCGA-E2-A15T	INPP4B	SNP	Silent	4	143226676	G	A	34	51
BRCA	TCGA-E2-A15T	KIAA0922	SNP	Silent	4	154471282	T	C	52	63
BRCA	TCGA-E2-A15T	PSD2	DEL	Frame_Shift_Del	5	139202313	G	-	47	92
BRCA	TCGA-E2-A15T	TNFAIP3	SNP	Silent	6	138197170	C	T	31	46
BRCA	TCGA-E2-A15T	SYNE1	DEL	Frame_Shift_Del	6	152652696	G	-	35	100
BRCA	TCGA-E2-A15T	THBS2	SNP	Silent	6	169626380	T	C	60	54
BRCA	TCGA-E2-A15T	MUC17	SNP	Silent	7	100696339	C	T	19	39
BRCA	TCGA-E2-A15T	GALNT11	SNP	Splice_Site	7	151807732	T	A	57	78
BRCA	TCGA-E2-A15T	ENSG00000186921	SNP	Missense_Mutation	7	158415438	A	C	4	53
BRCA	TCGA-E2-A15T	EFHA2	SNP	Missense_Mutation	8	16944521	G	C	33	87
BRCA	TCGA-E2-A15T	EXTL3	SNP	Missense_Mutation	8	28595139	G	C	45	85
BRCA	TCGA-E2-A15T	DAB2IP	SNP	Missense_Mutation	9	124522318	G	A	42	97
BRCA	TCGA-E2-A15T	COL5A1	SNP	Missense_Mutation	9	137687132	C	T	23	62
BRCA	TCGA-E2-A1AZ	KIF1B	SNP	Missense_Mutation	1	10364067	C	T	31	82
BRCA	TCGA-E2-A1AZ	VPS45	SNP	Silent	1	150054883	A	C	12	52
BRCA	TCGA-E2-A1AZ	HCN3	SNP	Missense_Mutation	1	155255046	G	T	43	96
BRCA	TCGA-E2-A1AZ	TNN	SNP	Missense_Mutation	1	175046741	C	G	29	55
BRCA	TCGA-E2-A1AZ	KIAA1804	SNP	Silent	1	233482294	A	G	7	39
BRCA	TCGA-E2-A1AZ	TYW3	SNP	Missense_Mutation	1	75229641	C	G	29	54
BRCA	TCGA-E2-A1AZ	NKX6-2	SNP	Nonstop_Mutation	10	134598422	A	G	6	71
BRCA	TCGA-E2-A1AZ	FAM208B	SNP	Missense_Mutation	10	5789754	G	T	44	59
BRCA	TCGA-E2-A1AZ	CHST3	SNP	Silent	10	73767170	C	A	23	51
BRCA	TCGA-E2-A1AZ	MARCH5	SNP	Missense_Mutation	10	94110927	G	A	38	98
BRCA	TCGA-E2-A1AZ	MPPED2	SNP	Missense_Mutation	11	30433116	C	T	31	100
BRCA	TCGA-E2-A1AZ	OR5AS1	SNP	Missense_Mutation	11	55798847	G	A	40	45
BRCA	TCGA-E2-A1AZ	CDC42BPG	SNP	Silent	11	64597091	G	A	38	43
BRCA	TCGA-E2-A1AZ	CDC42BPG	SNP	Nonsense_Mutation	11	64597720	G	A	37	60
BRCA	TCGA-E2-A1AZ	C2CD3	SNP	Missense_Mutation	11	73809103	G	C	35	50
BRCA	TCGA-E2-A1AZ	UNC119B	SNP	Silent	12	121148295	G	A	37	47
BRCA	TCGA-E2-A1AZ	CNTN1	SNP	Silent	12	41337930	C	A	31	40
BRCA	TCGA-E2-A1AZ	DCLK1	SNP	Missense_Mutation	13	36348770	A	T	14	65
BRCA	TCGA-E2-A1AZ	SEPT1	SNP	Missense_Mutation	16	30392785	C	A	23	10
BRCA	TCGA-E2-A1AZ	COIL	DEL	Frame_Shift_Del	17	55028115	TT	-	56	60
BRCA	TCGA-E2-A1AZ	ITGB4	SNP	Missense_Mutation	17	73748569	G	A	43	81
BRCA	TCGA-E2-A1AZ	SIGLEC8	SNP	Missense_Mutation	19	51961309	G	C	45	55
BRCA	TCGA-E2-A1AZ	ZNF611	SNP	Missense_Mutation	19	53208630	G	C	45	82
BRCA	TCGA-E2-A1AZ	ZNF665	SNP	Missense_Mutation	19	53668314	G	A	37	46
BRCA	TCGA-E2-A1AZ	IWS1	SNP	Silent	2	128250923	T	G	59	46
BRCA	TCGA-E2-A1AZ	ARL6IP6	SNP	Missense_Mutation	2	153575347	G	T	38	52
BRCA	TCGA-E2-A1AZ	TANC1	SNP	Missense_Mutation	2	160006902	A	C	8	60
BRCA	TCGA-E2-A1AZ	EPAS1	SNP	Missense_Mutation	2	46587815	G	C	33	84
BRCA	TCGA-E2-A1AZ	SLC1A4	SNP	Silent	2	65217239	G	T	42	46
BRCA	TCGA-E2-A1AZ	LYG1	SNP	Missense_Mutation	2	99907849	T	C	51	51
BRCA	TCGA-E2-A1AZ	NRK	SNP	Missense_Mutation	23	105152799	C	A	22	52
BRCA	TCGA-E2-A1AZ	TRPC5	SNP	Silent	23	111097215	C	A	17	58
BRCA	TCGA-E2-A1AZ	ODZ1	SNP	Missense_Mutation	23	123556236	C	T	31	86
BRCA	TCGA-E2-A1AZ	C3orf27	SNP	Silent	3	128292138	G	A	45	49
BRCA	TCGA-E2-A1AZ	COL6A5	SNP	Missense_Mutation	3	130116760	G	T	39	51
BRCA	TCGA-E2-A1AZ	TOPBP1	SNP	Missense_Mutation	3	133347430	G	C	45	66
BRCA	TCGA-E2-A1AZ	COL7A1	SNP	Missense_Mutation	3	48627949	C	A	26	53
BRCA	TCGA-E2-A1AZ	CASP6	SNP	Missense_Mutation	4	110610542	G	A	41	100
BRCA	TCGA-E2-A1AZ	HIST1H1B	SNP	Missense_Mutation	6	27834744	C	G	32	64
BRCA	TCGA-E2-A1AZ	CUL9	SNP	Missense_Mutation	6	43188323	G	C	33	100
BRCA	TCGA-E2-A1AZ	CENPQ	SNP	Silent	6	49438722	G	C	45	52
BRCA	TCGA-E2-A1AZ	CUL1	SNP	Missense_Mutation	7	148454195	C	T	31	76
BRCA	TCGA-E2-A1AZ	KCNH2	SNP	Missense_Mutation	7	150645546	C	T	24	74
BRCA	TCGA-E2-A1AZ	CCDC129	SNP	Missense_Mutation	7	31690768	G	C	45	74
BRCA	TCGA-E2-A1AZ	WBSCR22	SNP	Silent	7	73100970	C	A	19	77
BRCA	TCGA-E2-A1AZ	PKHD1L1	SNP	Missense_Mutation	8	110461681	A	C	14	48
BRCA	TCGA-E2-A1AZ	KCNQ3	SNP	Silent	8	133182583	G	A	45	83
BRCA	TCGA-E2-A1AZ	BAI1	SNP	Missense_Mutation	8	143546131	G	A	38	66
BRCA	TCGA-E2-A1AZ	ADAM7	SNP	Silent	8	24300020	G	C	47	56
BRCA	TCGA-E2-A1AZ	CA2	SNP	Missense_Mutation	8	86389385	G	C	47	52
BRCA	TCGA-E2-A1AZ	TRIM14	SNP	Missense_Mutation	9	100862335	G	A	34	61
BRCA	TCGA-E2-A1AZ	PNPLA7	SNP	Missense_Mutation	9	140400143	C	T	29	63
BRCA	TCGA-E2-A1B0	PRAMEF11	SNP	Missense_Mutation	1	12887489	T	C	57	47
BRCA	TCGA-E2-A1B0	IGSF8	SNP	Silent	1	160063723	G	C	39	18
BRCA	TCGA-E2-A1B0	RAP1GAP	SNP	Silent	1	21924472	C	T	28	55
BRCA	TCGA-E2-A1B0	OR2G3	SNP	Missense_Mutation	1	247769043	T	G	50	27
BRCA	TCGA-E2-A1B0	MYO3A	SNP	Silent	10	26463156	A	G	3	49
BRCA	TCGA-E2-A1B0	TUBAL3	SNP	Silent	10	5435789	C	T	31	45
BRCA	TCGA-E2-A1B0	KAT6B	SNP	Silent	10	76788710	A	G	9	52
BRCA	TCGA-E2-A1B0	KDM2A	SNP	Missense_Mutation	11	67020978	G	A	34	99
BRCA	TCGA-E2-A1B0	PANX1	SNP	Missense_Mutation	11	93913090	G	T	40	49
BRCA	TCGA-E2-A1B0	LRP1	SNP	Missense_Mutation	12	57602874	G	A	40	97
BRCA	TCGA-E2-A1B0	DCLK1	SNP	Missense_Mutation	13	36700097	G	A	37	100
BRCA	TCGA-E2-A1B0	SLC7A7	SNP	Silent	14	23245482	G	A	45	54
BRCA	TCGA-E2-A1B0	AK7	SNP	Missense_Mutation	14	96871122	G	A	38	48
BRCA	TCGA-E2-A1B0	MAP1A	SNP	Missense_Mutation	15	43817021	C	T	26	55
BRCA	TCGA-E2-A1B0	IDH3A	SNP	Missense_Mutation	15	78453949	G	A	39	100
BRCA	TCGA-E2-A1B0	KIAA1199	SNP	Missense_Mutation	15	81221455	A	G	10	76
BRCA	TCGA-E2-A1B0	MMP15	SNP	Missense_Mutation	16	58073925	A	T	10	88
BRCA	TCGA-E2-A1B0	C16orf47	SNP	Missense_Mutation	16	73164976	G	T	48	47
BRCA	TCGA-E2-A1B0	TRPV2	SNP	Missense_Mutation	17	16330833	T	G	53	73
BRCA	TCGA-E2-A1B0	MYO15A	SNP	Silent	17	18022852	C	T	19	49
BRCA	TCGA-E2-A1B0	ACLY	SNP	Missense_Mutation	17	40065254	T	A	50	93
BRCA	TCGA-E2-A1B0	TP53	SNP	Missense_Mutation	17	7578534	C	G	32	75
BRCA	TCGA-E2-A1B0	TLE6	SNP	Nonsense_Mutation	19	2987728	G	T	41	56
BRCA	TCGA-E2-A1B0	ZNF577	SNP	Silent	19	52376691	T	C	60	48
BRCA	TCGA-E2-A1B0	EMR1	SNP	Silent	19	6919734	C	T	29	49
BRCA	TCGA-E2-A1B0	CBS	SNP	Missense_Mutation	21	44483098	C	T	23	90
BRCA	TCGA-E2-A1B0	PFKL	SNP	Silent	21	45742920	C	T	31	49
BRCA	TCGA-E2-A1B0	PIWIL3	SNP	Silent	22	25115535	C	T	27	48
BRCA	TCGA-E2-A1B0	PITPNB	SNP	Splice_site	22	28293118	C	T	23	82
BRCA	TCGA-E2-A1B0	PAK3	SNP	Missense_Mutation	23	110366476	C	T	31	92
BRCA	TCGA-E2-A1B0	TRAPPC2	SNP	Missense_Mutation	23	13734634	A	G	14	55
BRCA	TCGA-E2-A1B0	CCDC37	SNP	Silent	3	126153123	C	T	29	52
BRCA	TCGA-E2-A1B0	RAB43	SNP	Missense_Mutation	3	128810076	T	C	63	87
BRCA	TCGA-E2-A1B0	CDH6	SNP	Nonsense_Mutation	5	31294332	C	A	17	71
BRCA	TCGA-E2-A1B0	REV3L	SNP	Missense_Mutation	6	111688818	C	A	17	56
BRCA	TCGA-E2-A1B0	SASH1	SNP	Missense_Mutation	6	148852768	G	A	38	97
BRCA	TCGA-E2-A1B0	ITPR3	SNP	Missense_Mutation	6	33653896	G	A	41	97
BRCA	TCGA-E2-A1B0	DAAM2	SNP	Silent	6	39847226	G	A	36	57
BRCA	TCGA-E2-A1B0	SMARCD3	SNP	Missense_Mutation	7	150937202	C	T	20	76
BRCA	TCGA-E2-A1B0	ANXA13	SNP	Missense_Mutation	8	124710745	A	C	2	48
BRCA	TCGA-E2-A1B0	DLC1	SNP	Missense_Mutation	8	13357027	T	C	58	54
BRCA	TCGA-E2-A1B0	LOC100288765	SNP	Missense_Mutation	9	69845843	A	C	9	48
BRCA	TCGA-E2-A1B1	SLAMF9	SNP	Silent	1	159923409	G	A	39	56
BRCA	TCGA-E2-A1B1	CHI3L1	SNP	Silent	1	203154335	G	C	46	57
BRCA	TCGA-E2-A1B1	SRRM1	SNP	Missense_Mutation	1	24996733	C	T	23	69
BRCA	TCGA-E2-A1B1	PNLIP	SNP	Silent	10	118318677	C	T	30	59
BRCA	TCGA-E2-A1B1	FAT3	SNP	Missense_Mutation	11	92533820	C	G	17	55
BRCA	TCGA-E2-A1B1	ATP2B1	SNP	Missense_Mutation	12	90018057	A	C	1	92
BRCA	TCGA-E2-A1B1	NEDD4	SNP	Missense_Mutation	15	56141078	G	A	41	80
BRCA	TCGA-E2-A1B1	NTRK3	SNP	Missense_Mutation	15	88476388	G	A	39	53
BRCA	TCGA-E2-A1B1	CDH11	SNP	Silent	16	65016151	G	A	40	49
BRCA	TCGA-E2-A1B1	HLF	SNP	Missense_Mutation	17	53345424	G	A	48	97
BRCA	TCGA-E2-A1B1	TRIP12	SNP	Silent	2	230643194	G	A	34	52
BRCA	TCGA-E2-A1B1	ZCCHC12	SNP	Missense_Mutation	23	117959237	C	G	17	48
BRCA	TCGA-E2-A1B1	GRK4	SNP	Missense_Mutation	4	2986263	C	T	31	85
BRCA	TCGA-E2-A1B1	PTPN13	SNP	Missense_Mutation	4	87728895	C	G	29	100
BRCA	TCGA-E2-A1B1	PHIP	DEL	In_Frame_Del	6	79665349	TTC	-	64	75
BRCA	TCGA-E2-A1B4	SDHB	SNP	Missense_Mutation	1	17355201	T	C	52	76
BRCA	TCGA-E2-A1B4	PCNXL2	SNP	Nonsense_Mutation	1	233136233	C	A	31	100
BRCA	TCGA-E2-A1B4	NPHP4	SNP	Missense_Mutation	1	5964847	C	T	31	46
BRCA	TCGA-E2-A1B4	HIP1R	SNP	Missense_Mutation	12	123345688	T	G	52	56
BRCA	TCGA-E2-A1B4	LOC100288809	SNP	Missense_Mutation	12	53201674	G	T	47	35
BRCA	TCGA-E2-A1B4	ENOX1	SNP	Splice_site	13	43810874	C	A	30	83
BRCA	TCGA-E2-A1B4	KATNB1	SNP	Missense_Mutation	16	57786814	G	A	37	99
BRCA	TCGA-E2-A1B4	ELAC2	SNP	Silent	17	12897055	G	A	33	51
BRCA	TCGA-E2-A1B4	MYBBP1A	SNP	Splice_Site	17	4448552	A	C	6	57
BRCA	TCGA-E2-A1B4	GP1BA	SNP	Missense_Mutation	17	4837651	G	C	43	50
BRCA	TCGA-E2-A1B4	XYLT2	SNP	Missense_Mutation	17	48433561	T	C	52	90
BRCA	TCGA-E2-A1B4	DSG1	SNP	Missense_Mutation	18	28934692	G	C	45	74
BRCA	TCGA-E2-A1B4	FCHO1	SNP	Nonsense_Mutation	19	17883272	C	T	21	85
BRCA	TCGA-E2-A1B4	ATP8B3	SNP	Missense_Mutation	19	1802548	A	C	11	72
BRCA	TCGA-E2-A1B4	PNMAL2	SNP	Silent	19	46998318	C	T	27	45
BRCA	TCGA-E2-A1B4	THSD7B	SNP	Missense_Mutation	2	138000059	G	A	38	85
BRCA	TCGA-E2-A1B4	ZSWIM2	SNP	Missense_Mutation	2	187697884	T	C	50	51
BRCA	TCGA-E2-A1B4	KLHL30	SNP	Silent	2	239049614	C	T	27	44
BRCA	TCGA-E2-A1B4	USP34	SNP	Missense_Mutation	2	61492669	A	G	13	91
BRCA	TCGA-E2-A1B4	RRBP1	SNP	Missense_Mutation	20	17640582	T	G	59	44
BRCA	TCGA-E2-A1B4	TPTE	SNP	Missense_Mutation	21	10921971	G	A	42	48
BRCA	TCGA-E2-A1B4	ADAMTS5	SNP	Missense_Mutation	21	28305265	G	T	44	55
BRCA	TCGA-E2-A1B4	MTMR3	SNP	Missense_Mutation	22	30414019	A	C	14	89
BRCA	TCGA-E2-A1B4	TMSB15A	SNP	Missense_Mutation	23	101769050	T	G	49	52
BRCA	TCGA-E2-A1B4	STAG2	SNP	Missense_Mutation	23	123211834	A	G	5	90
BRCA	TCGA-E2-A1B4	CD96	SNP	Missense_Mutation	3	111304209	C	A	19	43
BRCA	TCGA-E2-A1B4	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-E2-A1B4	DOCK3	SNP	Missense_Mutation	3	51393602	C	A	28	59
BRCA	TCGA-E2-A1B4	DNAH5	SNP	Missense_Mutation	5	13902213	G	A	46	74
BRCA	TCGA-E2-A1B4	CDHR2	SNP	Missense_Mutation	5	176004515	C	T	27	43
BRCA	TCGA-E2-A1B4	MAP3K1	SNP	Nonsense_Mutation	5	56178085	C	T	29	76
BRCA	TCGA-E2-A1B4	MAP3K1	INS	Frame_Shift_Ins	5	56178466	-	T	36	92
BRCA	TCGA-E2-A1B4	PTCD2	SNP	Missense_Mutation	5	71654216	A	C	6	62
BRCA	TCGA-E2-A1B4	FOXK1	SNP	Silent	7	4796777	T	G	59	35
BRCA	TCGA-E2-A1B4	SLC52A2	SNP	Missense_Mutation	8	145584626	A	G	16	75
BRCA	TCGA-E2-A1B4	RGS3	SNP	Missense_Mutation	9	116346360	G	A	41	74
BRCA	TCGA-E2-A1B4	OLFML2A	SNP	Missense_Mutation	9	127563854	G	T	34	67
BRCA	TCGA-E2-A1B4	SMARCA2	SNP	Missense_Mutation	9	2088587	G	A	33	100
BRCA	TCGA-E2-A1B5	GATA3	INS	Frame_Shift_Ins	10	8115965	-	A	25	44
BRCA	TCGA-E2-A1B5	TRIM34	DEL	Frame_Shift_Del	11	5624628	AC	-	10	70
BRCA	TCGA-E2-A1B5	RAB6A	INS	Frame_Shift_Ins	11	73429669	-	A	49	76
BRCA	TCGA-E2-A1B5	PANX1	DEL	In_Frame_Del	11	93886744	AGA	-	7	68
BRCA	TCGA-E2-A1B5	BRIP1	SNP	Silent	17	59821812	G	A	45	66
BRCA	TCGA-E2-A1B5	BRIP1	SNP	Missense_Mutation	17	59821901	G	C	33	70
BRCA	TCGA-E2-A1B5	ADNP2	SNP	Silent	18	77895774	C	T	29	43
BRCA	TCGA-E2-A1B5	PCSK4	SNP	Silent	19	1482992	G	A	48	58
BRCA	TCGA-E2-A1B5	GRIN2D	SNP	Missense_Mutation	19	48945466	G	A	37	95
BRCA	TCGA-E2-A1B5	FTL	SNP	Missense_Mutation	19	49469846	G	A	45	93
BRCA	TCGA-E2-A1B5	PRR12	SNP	Missense_Mutation	19	50128449	C	T	23	61
BRCA	TCGA-E2-A1B5	PCDHA3	SNP	Missense_Mutation	5	140181539	G	A	37	99
BRCA	TCGA-E2-A1B5	PDGFRB	SNP	Missense_Mutation	5	149510110	G	T	44	51
BRCA	TCGA-E2-A1B5	LPA	SNP	Missense_Mutation	6	161071469	C	T	31	55
BRCA	TCGA-E2-A1B5	ZBTB6	SNP	Silent	9	125674142	G	C	45	57
BRCA	TCGA-E2-A1B6	RYR2	SNP	Missense_Mutation	1	237796915	G	A	40	99
BRCA	TCGA-E2-A1B6	DHCR24	SNP	Missense_Mutation	1	55331007	C	T	27	100
BRCA	TCGA-E2-A1B6	CHD4	SNP	Silent	12	6690307	A	G	8	43
BRCA	TCGA-E2-A1B6	LINGO1	SNP	Missense_Mutation	15	77907402	C	T	19	62
BRCA	TCGA-E2-A1B6	TP53	SNP	Nonsense_Mutation	17	7574003	G	A	39	57
BRCA	TCGA-E2-A1B6	PDE4A	SNP	Missense_Mutation	19	10570300	C	G	30	65
BRCA	TCGA-E2-A1B6	CASP8	SNP	Missense_Mutation	2	202149683	C	T	30	71
BRCA	TCGA-E2-A1B6	PHF21B	SNP	Missense_Mutation	22	45279150	C	T	27	56
BRCA	TCGA-E2-A1B6	C6orf118	SNP	Missense_Mutation	6	165715615	G	T	43	79
BRCA	TCGA-E2-A1B6	ZNF618	SNP	Missense_Mutation	9	116811102	G	T	43	94
BRCA	TCGA-E2-A1BC	C1orf129	SNP	Silent	1	170952657	C	T	19	33
BRCA	TCGA-E2-A1BC	CCSAP	SNP	Missense_Mutation	1	229461134	T	G	63	68
BRCA	TCGA-E2-A1BC	DDAH1	SNP	Missense_Mutation	1	85790543	G	T	44	53
BRCA	TCGA-E2-A1BC	MUS81	SNP	Missense_Mutation	11	65632201	G	T	42	75
BRCA	TCGA-E2-A1BC	SPTBN2	SNP	Silent	11	66475053	G	C	45	52
BRCA	TCGA-E2-A1BC	PRB1	SNP	Missense_Mutation	12	11506225	G	A	41	67
BRCA	TCGA-E2-A1BC	GPR133	SNP	Missense_Mutation	12	131616342	G	A	47	70
BRCA	TCGA-E2-A1BC	TM7SF3	SNP	Silent	12	27133509	G	C	45	45
BRCA	TCGA-E2-A1BC	SMAD9	SNP	Missense_Mutation	13	37446983	C	T	27	99
BRCA	TCGA-E2-A1BC	ALDH1A3	SNP	Missense_Mutation	15	101447414	C	T	25	81
BRCA	TCGA-E2-A1BC	ARHGAP11A	SNP	Nonsense_Mutation	15	32929655	C	A	29	57
BRCA	TCGA-E2-A1BC	RBFOX1	SNP	Splice_site	16	7102099	G	T	43	77
BRCA	TCGA-E2-A1BC	MAP2K4	DEL	Splice_Site	17	11984671	AG	-	7	89
BRCA	TCGA-E2-A1BC	NF1	DEL	Splice_Site	17	29588873	TAGG	-	53	45
BRCA	TCGA-E2-A1BC	KIF18B	SNP	Silent	17	43009058	G	A	36	49
BRCA	TCGA-E2-A1BC	USH1G	SNP	Missense_Mutation	17	72916760	G	C	44	59
BRCA	TCGA-E2-A1BC	KCNJ6	SNP	Silent	21	39087022	T	C	63	41
BRCA	TCGA-E2-A1BC	FAM48B2	SNP	Missense_Mutation	23	24329460	G	T	38	43
BRCA	TCGA-E2-A1BC	BCOR	SNP	Missense_Mutation	23	39922954	T	C	51	48
BRCA	TCGA-E2-A1BC	RLIM	SNP	Missense_Mutation	23	73812045	G	A	40	83
BRCA	TCGA-E2-A1BC	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A1BC	BSN	SNP	Nonsense_Mutation	3	49698237	A	T	5	89
BRCA	TCGA-E2-A1BC	RNF123	SNP	Missense_Mutation	3	49742580	G	C	38	76
BRCA	TCGA-E2-A1BC	PCDH10	SNP	Nonsense_Mutation	4	134084410	C	T	27	69
BRCA	TCGA-E2-A1BC	GABRG1	SNP	Missense_Mutation	4	46053637	G	C	36	99
BRCA	TCGA-E2-A1BC	SH3TC1	SNP	Silent	4	8228801	C	G	22	28
BRCA	TCGA-E2-A1BC	FAM13A	SNP	Silent	4	89744132	C	A	25	57
BRCA	TCGA-E2-A1BC	EXOC3	SNP	Silent	5	447698	C	T	30	42
BRCA	TCGA-E2-A1BC	MED23	DEL	Frame_Shift_Del	6	131937129	G	-	47	87
BRCA	TCGA-E2-A1BC	SCARA5	SNP	Silent	8	27845103	G	A	39	51
BRCA	TCGA-E2-A1BC	OR1N1	SNP	Silent	9	125288841	G	A	38	48
BRCA	TCGA-E2-A1BD	RNASEL	SNP	Missense_Mutation	1	182554944	G	T	34	53
BRCA	TCGA-E2-A1BD	ACTN2	SNP	Missense_Mutation	1	236918328	C	T	23	97
BRCA	TCGA-E2-A1BD	SLC45A1	SNP	Splice_site	1	8385359	A	G	12	50
BRCA	TCGA-E2-A1BD	UBE3B	SNP	Missense_Mutation	12	109948241	C	G	22	97
BRCA	TCGA-E2-A1BD	RIMBP2	SNP	Silent	12	130935809	C	T	23	35
BRCA	TCGA-E2-A1BD	RERGL	SNP	Missense_Mutation	12	18234200	C	G	32	61
BRCA	TCGA-E2-A1BD	KCNA1	SNP	Silent	12	5021915	C	T	31	50
BRCA	TCGA-E2-A1BD	RNF41	SNP	Missense_Mutation	12	56601499	C	T	19	100
BRCA	TCGA-E2-A1BD	ITGA11	SNP	Missense_Mutation	15	68613777	C	T	23	50
BRCA	TCGA-E2-A1BD	GP2	SNP	Splice_site	16	20327362	A	T	10	52
BRCA	TCGA-E2-A1BD	CACNA1A	SNP	Missense_Mutation	19	13414649	G	T	33	95
BRCA	TCGA-E2-A1BD	ALK	SNP	Missense_Mutation	2	29455275	C	T	23	96
BRCA	TCGA-E2-A1BD	DNAH6	SNP	Silent	2	84846872	C	T	23	46
BRCA	TCGA-E2-A1BD	MATN4	SNP	Missense_Mutation	20	43927055	C	T	27	85
BRCA	TCGA-E2-A1BD	ELMO2	DEL	Frame_Shift_Del	20	45021747	T	-	60	53
BRCA	TCGA-E2-A1BD	PLCB1	SNP	Silent	20	8721040	G	T	46	40
BRCA	TCGA-E2-A1BD	RRP1	SNP	Missense_Mutation	21	45220491	C	T	23	61
BRCA	TCGA-E2-A1BD	CCT8L2	SNP	Missense_Mutation	22	17071880	C	T	19	48
BRCA	TCGA-E2-A1BD	GRIA3	SNP	Missense_Mutation	23	122599568	C	T	24	98
BRCA	TCGA-E2-A1BD	SYTL5	SNP	Silent	23	37893157	A	T	7	29
BRCA	TCGA-E2-A1BD	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A1BD	GAK	SNP	Missense_Mutation	4	906526	G	T	45	59
BRCA	TCGA-E2-A1BD	MAP3K1	DEL	Frame_Shift_Del	5	56177011	ATAG	-	16	62
BRCA	TCGA-E2-A1BD	MAP3K1	INS	Frame_Shift_Ins	5	56179424	-	T	44	95
BRCA	TCGA-E2-A1BD	MAP1B	SNP	Nonsense_Mutation	5	71479590	C	T	23	70
BRCA	TCGA-E2-A1BD	NEUROD6	SNP	Missense_Mutation	7	31377921	C	T	27	96
BRCA	TCGA-E2-A1BD	GNAI1	SNP	Missense_Mutation	7	79818279	C	T	32	100
BRCA	TCGA-E2-A1BD	COMMD5	SNP	Nonsense_Mutation	8	146076483	G	A	46	71
BRCA	TCGA-E2-A1BD	PCM1	SNP	Missense_Mutation	8	17838141	A	C	5	67
BRCA	TCGA-E2-A1IE	CTTNBP2NL	SNP	Missense_Mutation	1	112998889	C	T	23	99
BRCA	TCGA-E2-A1IE	EIF3I	SNP	Missense_Mutation	1	32694376	C	T	19	75
BRCA	TCGA-E2-A1IE	ATM	SNP	Missense_Mutation	11	108214019	T	G	56	93
BRCA	TCGA-E2-A1IE	CD59	SNP	Missense_Mutation	11	33731840	G	A	40	5
BRCA	TCGA-E2-A1IE	OR10P1	SNP	Missense_Mutation	12	56031321	G	T	48	50
BRCA	TCGA-E2-A1IE	NPAP1	SNP	Missense_Mutation	15	24922753	C	T	20	50
BRCA	TCGA-E2-A1IE	MSLNL	SNP	Missense_Mutation	16	832874	C	T	23	30
BRCA	TCGA-E2-A1IE	ZNF175	SNP	Missense_Mutation	19	52091101	G	A	36	48
BRCA	TCGA-E2-A1IE	MUC16	SNP	Missense_Mutation	19	9058547	C	A	20	48
BRCA	TCGA-E2-A1IE	TTN	SNP	Missense_Mutation	2	179444052	G	A	39	87
BRCA	TCGA-E2-A1IE	TTN	SNP	Missense_Mutation	2	179479294	A	G	6	93
BRCA	TCGA-E2-A1IE	HNF4A	SNP	Silent	20	43052731	C	T	17	86
BRCA	TCGA-E2-A1IE	ZCCHC12	SNP	Missense_Mutation	23	117960036	G	A	48	65
BRCA	TCGA-E2-A1IE	KIAA2018	DEL	In_Frame_Del	3	113376111	TGC	-	63	73
BRCA	TCGA-E2-A1IE	DCBLD2	SNP	Silent	3	98538119	C	T	27	50
BRCA	TCGA-E2-A1IE	MICAL1	SNP	Missense_Mutation	6	109766645	C	T	30	53
BRCA	TCGA-E2-A1IE	HIST1H3B	SNP	Missense_Mutation	6	26032045	C	T	31	98
BRCA	TCGA-E2-A1IE	CCND3	SNP	Missense_Mutation	6	41903724	G	C	43	73
BRCA	TCGA-E2-A1IE	FBXL18	SNP	Missense_Mutation	7	5545048	A	C	15	86
BRCA	TCGA-E2-A1IE	DOCK5	SNP	Missense_Mutation	8	25189823	C	A	24	62
BRCA	TCGA-E2-A1IE	PCSK5	SNP	Missense_Mutation	9	78799604	G	A	39	74
BRCA	TCGA-E2-A1IF	PPP1R12B	SNP	Missense_Mutation	1	202411672	T	C	54	61
BRCA	TCGA-E2-A1IF	AHCTF1	SNP	Missense_Mutation	1	247016578	C	T	21	55
BRCA	TCGA-E2-A1IF	KCNA4	SNP	Missense_Mutation	11	30033418	G	A	37	83
BRCA	TCGA-E2-A1IF	STAB2	SNP	Silent	12	104100710	C	T	27	21
BRCA	TCGA-E2-A1IF	TBX3	SNP	Missense_Mutation	12	115120669	A	G	5	92
BRCA	TCGA-E2-A1IF	PLA2G1B	SNP	Silent	12	120763747	C	A	30	50
BRCA	TCGA-E2-A1IF	COQ5	SNP	Missense_Mutation	12	120966842	C	A	23	44
BRCA	TCGA-E2-A1IF	KRAS	SNP	Missense_Mutation	12	25398284	C	T	18	99
BRCA	TCGA-E2-A1IF	CYSLTR2	SNP	Missense_Mutation	13	49281768	C	T	19	51
BRCA	TCGA-E2-A1IF	ZNF747	SNP	Nonsense_Mutation	16	30545573	C	T	22	78
BRCA	TCGA-E2-A1IF	SLC41A3	SNP	Missense_Mutation	3	125769871	A	G	6	87
BRCA	TCGA-E2-A1IF	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A1IF	KLHL31	SNP	Missense_Mutation	6	53519409	A	C	16	67
BRCA	TCGA-E2-A1IF	C7orf63	INS	Splice_Site	7	89938682	-	T	44	86
BRCA	TCGA-E2-A1IF	APBA1	SNP	Missense_Mutation	9	72073092	A	C	4	69
BRCA	TCGA-E2-A1IF	FAM120A	SNP	Missense_Mutation	9	96238607	T	C	53	92
BRCA	TCGA-E2-A1IG	OBSCN	SNP	Missense_Mutation	1	228480325	T	C	59	91
BRCA	TCGA-E2-A1IG	MORN1	SNP	Missense_Mutation	1	2304001	G	C	41	74
BRCA	TCGA-E2-A1IG	ZNF683	SNP	Silent	1	26688661	C	T	19	51
BRCA	TCGA-E2-A1IG	ARID1A	SNP	Missense_Mutation	1	27106363	T	C	58	91
BRCA	TCGA-E2-A1IG	MIER1	INS	Splice_Site	1	67424667	-	T	36	87
BRCA	TCGA-E2-A1IG	CCBL2	SNP	Missense_Mutation	1	89434456	T	C	52	89
BRCA	TCGA-E2-A1IG	BTBD16	INS	Frame_Shift_Ins	10	124097568	-	T	48	76
BRCA	TCGA-E2-A1IG	EBF3	SNP	Missense_Mutation	10	131640515	A	T	14	93
BRCA	TCGA-E2-A1IG	DIP2C	SNP	Silent	10	329357	G	A	38	50
BRCA	TCGA-E2-A1IG	LRRTM3	SNP	Missense_Mutation	10	68686978	G	A	37	84
BRCA	TCGA-E2-A1IG	DNA2	SNP	Missense_Mutation	10	70182350	A	C	8	92
BRCA	TCGA-E2-A1IG	HSPA8	DEL	In_Frame_Del	11	122930239	GAA	-	45	98
BRCA	TCGA-E2-A1IG	SELPLG	DEL	In_Frame_Del	12	109017672	GCA	-	42	43
BRCA	TCGA-E2-A1IG	SPTB	SNP	Silent	14	65220359	G	A	39	38
BRCA	TCGA-E2-A1IG	GOLGA6L6	SNP	Missense_Mutation	15	20739675	C	T	31	51
BRCA	TCGA-E2-A1IG	USP7	SNP	Silent	16	8997212	G	A	40	44
BRCA	TCGA-E2-A1IG	DNAH9	SNP	Silent	17	11572851	C	T	19	47
BRCA	TCGA-E2-A1IG	MAP2K4	SNP	Nonsense_Mutation	17	12032459	G	T	45	98
BRCA	TCGA-E2-A1IG	NOS2	SNP	Missense_Mutation	17	26116644	C	T	19	35
BRCA	TCGA-E2-A1IG	C17orf50	SNP	Missense_Mutation	17	34091079	G	T	38	57
BRCA	TCGA-E2-A1IG	TBC1D3	SNP	Missense_Mutation	17	36339584	G	T	47	67
BRCA	TCGA-E2-A1IG	SPPL2C	SNP	Missense_Mutation	17	43924233	C	T	26	71
BRCA	TCGA-E2-A1IG	ABCA10	SNP	Splice_Site	17	67212357	C	A	18	70
BRCA	TCGA-E2-A1IG	FASN	DEL	In_Frame_Del	17	80046886	GCTCAG	-	46	51
BRCA	TCGA-E2-A1IG	GREB1L	SNP	Missense_Mutation	18	19031101	C	T	18	64
BRCA	TCGA-E2-A1IG	DYM	SNP	Silent	18	46808427	C	T	25	52
BRCA	TCGA-E2-A1IG	KCNH7	SNP	Missense_Mutation	2	163693155	C	T	31	100
BRCA	TCGA-E2-A1IG	PGAP1	SNP	Missense_Mutation	2	197707454	A	G	16	67
BRCA	TCGA-E2-A1IG	SLC16A14	SNP	Missense_Mutation	2	230910775	G	A	40	77
BRCA	TCGA-E2-A1IG	EML6	SNP	Silent	2	55144045	C	T	31	51
BRCA	TCGA-E2-A1IG	WRB	DEL	Splice_Site	21	40762623	GATGTCCAGGGTGCT	-	33	87
BRCA	TCGA-E2-A1IG	COL4A5	INS	Frame_Shift_Ins	23	107834827	-	A	21	69
BRCA	TCGA-E2-A1IG	UMPS	SNP	Missense_Mutation	3	124457125	C	A	30	49
BRCA	TCGA-E2-A1IG	ITPR1	SNP	Missense_Mutation	3	4730264	C	A	28	77
BRCA	TCGA-E2-A1IG	HERC6	SNP	Missense_Mutation	4	89363548	A	G	9	66
BRCA	TCGA-E2-A1IG	DIAPH1	SNP	Missense_Mutation	5	140960365	A	C	4	70
BRCA	TCGA-E2-A1IG	CENPK	SNP	Missense_Mutation	5	64824380	T	A	52	48
BRCA	TCGA-E2-A1IG	FRK	SNP	Missense_Mutation	6	116381284	C	G	31	44
BRCA	TCGA-E2-A1IG	HIVEP1	SNP	Missense_Mutation	6	12131113	G	A	37	100
BRCA	TCGA-E2-A1IG	SYNE1	SNP	Silent	6	152861113	G	A	45	67
BRCA	TCGA-E2-A1IG	GPR110	SNP	Silent	6	46975029	T	C	50	13
BRCA	TCGA-E2-A1IG	GPR111	SNP	Missense_Mutation	6	47646834	C	G	17	39
BRCA	TCGA-E2-A1IG	BACH2	SNP	Missense_Mutation	6	90660252	A	T	9	88
BRCA	TCGA-E2-A1IG	SDK1	SNP	Silent	7	4249712	C	T	19	47
BRCA	TCGA-E2-A1IG	DLGAP2	SNP	Missense_Mutation	8	1497301	C	T	27	51
BRCA	TCGA-E2-A1IG	HOOK3	SNP	Missense_Mutation	8	42798513	C	A	25	81
BRCA	TCGA-E2-A1IG	PREX2	SNP	Missense_Mutation	8	68965476	G	A	39	100
BRCA	TCGA-E2-A1IG	GRIN3A	SNP	Silent	9	104433299	G	A	33	57
BRCA	TCGA-E2-A1IH	SLC16A1	SNP	Missense_Mutation	1	113471850	G	C	45	62
BRCA	TCGA-E2-A1IH	SELP	SNP	Missense_Mutation	1	169562905	G	A	40	52
BRCA	TCGA-E2-A1IH	KCNH1	SNP	Missense_Mutation	1	211263988	C	T	31	98
BRCA	TCGA-E2-A1IH	GJB5	SNP	Missense_Mutation	1	35223650	A	C	5	64
BRCA	TCGA-E2-A1IH	YME1L1	SNP	Missense_Mutation	10	27437888	A	G	9	51
BRCA	TCGA-E2-A1IH	JMJD1C	SNP	Missense_Mutation	10	64968401	C	T	30	99
BRCA	TCGA-E2-A1IH	CDH23	SNP	Missense_Mutation	10	73326553	G	A	43	96
BRCA	TCGA-E2-A1IH	PTEN	DEL	Frame_Shift_Del	10	89690810	GAAA	-	45	98
BRCA	TCGA-E2-A1IH	SART1	SNP	Missense_Mutation	11	65746121	G	T	45	91
BRCA	TCGA-E2-A1IH	RPS6KB2	SNP	Missense_Mutation	11	67200221	G	A	45	96
BRCA	TCGA-E2-A1IH	PPFIA1	SNP	Silent	11	70171069	G	C	45	48
BRCA	TCGA-E2-A1IH	C2CD3	SNP	Missense_Mutation	11	73872571	G	T	44	81
BRCA	TCGA-E2-A1IH	TAOK3	SNP	Silent	12	118610295	C	T	28	68
BRCA	TCGA-E2-A1IH	GALNT8	SNP	Silent	12	4855388	C	T	29	53
BRCA	TCGA-E2-A1IH	KRT1	SNP	Missense_Mutation	12	53074048	G	A	38	57
BRCA	TCGA-E2-A1IH	GAS6	SNP	Missense_Mutation	13	114531617	G	A	38	82
BRCA	TCGA-E2-A1IH	RB1	SNP	Silent	13	48954373	T	C	49	77
BRCA	TCGA-E2-A1IH	RNF31	SNP	Missense_Mutation	14	24619840	C	G	29	60
BRCA	TCGA-E2-A1IH	MPP5	SNP	Missense_Mutation	14	67790494	C	G	31	76
BRCA	TCGA-E2-A1IH	RYR3	SNP	Silent	15	33954810	G	A	37	40
BRCA	TCGA-E2-A1IH	DMXL2	SNP	Missense_Mutation	15	51742471	C	T	18	97
BRCA	TCGA-E2-A1IH	ATP2A1	SNP	Missense_Mutation	16	28913342	C	G	32	69
BRCA	TCGA-E2-A1IH	NFATC3	SNP	Splice_site	16	68215432	G	A	43	74
BRCA	TCGA-E2-A1IH	CDH1	DEL	Frame_Shift_Del	16	68855977	AGAACCTCGAACTATATTCTTCTGTG	-	7	52
BRCA	TCGA-E2-A1IH	CDH1	SNP	Missense_Mutation	16	68856011	C	T	30	74
BRCA	TCGA-E2-A1IH	SPAG9	SNP	Missense_Mutation	17	49067939	T	C	60	57
BRCA	TCGA-E2-A1IH	ABCA8	SNP	Missense_Mutation	17	66928618	G	A	45	68
BRCA	TCGA-E2-A1IH	NETO1	SNP	Missense_Mutation	18	70417314	G	T	40	53
BRCA	TCGA-E2-A1IH	CACNA1A	SNP	Missense_Mutation	19	13368334	C	T	29	97
BRCA	TCGA-E2-A1IH	WDR87	SNP	Missense_Mutation	19	38382389	G	C	41	48
BRCA	TCGA-E2-A1IH	PAK4	SNP	Missense_Mutation	19	39660228	C	T	30	90
BRCA	TCGA-E2-A1IH	CCDC8	SNP	Silent	19	46914499	G	A	39	15
BRCA	TCGA-E2-A1IH	PPP2R1A	SNP	Missense_Mutation	19	52705251	G	C	45	89
BRCA	TCGA-E2-A1IH	ZNF578	SNP	Missense_Mutation	19	53014257	A	T	16	57
BRCA	TCGA-E2-A1IH	TTN	SNP	Missense_Mutation	2	179605501	C	G	32	53
BRCA	TCGA-E2-A1IH	CCDC141	SNP	Missense_Mutation	2	179718227	G	A	45	69
BRCA	TCGA-E2-A1IH	HSPD1	INS	Frame_Shift_Ins	2	198363536	-	T	44	99
BRCA	TCGA-E2-A1IH	TRAK2	SNP	Missense_Mutation	2	202245814	T	C	57	54
BRCA	TCGA-E2-A1IH	PLEKHH2	SNP	Missense_Mutation	2	43992655	C	A	18	49
BRCA	TCGA-E2-A1IH	WDR92	SNP	Missense_Mutation	2	68371831	C	T	32	67
BRCA	TCGA-E2-A1IH	APLF	SNP	Missense_Mutation	2	68740758	A	T	12	75
BRCA	TCGA-E2-A1IH	RAB36	INS	In_Frame_Ins	22	23498327	-	CTGAGAAAA	54	51
BRCA	TCGA-E2-A1IH	RAB36	INS	Frame_Shift_Ins	22	23498334	-	A	18	37
BRCA	TCGA-E2-A1IH	SMARCA1	SNP	Splice_Site	23	128650475	C	G	32	98
BRCA	TCGA-E2-A1IH	FANCB	SNP	Missense_Mutation	23	14871186	T	A	50	49
BRCA	TCGA-E2-A1IH	SLC7A3	SNP	Missense_Mutation	23	70149574	G	T	41	94
BRCA	TCGA-E2-A1IH	UROC1	SNP	Missense_Mutation	3	126222869	C	T	29	77
BRCA	TCGA-E2-A1IH	SH3BP5	SNP	Missense_Mutation	3	15300446	G	A	38	50
BRCA	TCGA-E2-A1IH	TTC14	SNP	Missense_Mutation	3	180328183	C	G	29	48
BRCA	TCGA-E2-A1IH	ZNF619	SNP	Nonsense_Mutation	3	40528668	C	T	29	49
BRCA	TCGA-E2-A1IH	PRICKLE2	SNP	Missense_Mutation	3	64142855	A	G	7	93
BRCA	TCGA-E2-A1IH	NUP155	SNP	Silent	5	37330153	G	T	37	69
BRCA	TCGA-E2-A1IH	DDX4	SNP	Missense_Mutation	5	55042014	G	C	41	61
BRCA	TCGA-E2-A1IH	CEP85L	SNP	Silent	6	118886718	G	T	37	57
BRCA	TCGA-E2-A1IH	SYTL3	SNP	Splice_site	6	159184541	A	C	3	53
BRCA	TCGA-E2-A1IH	MYO6	SNP	Missense_Mutation	6	76623827	G	A	45	100
BRCA	TCGA-E2-A1IH	DOPEY1	SNP	Nonsense_Mutation	6	83869520	C	A	29	97
BRCA	TCGA-E2-A1IH	THAP5	SNP	Missense_Mutation	7	108204886	A	G	15	48
BRCA	TCGA-E2-A1IH	MTSS1	SNP	Silent	8	125711807	G	A	40	40
BRCA	TCGA-E2-A1IH	OR1L8	SNP	Missense_Mutation	9	125329986	G	T	33	48
BRCA	TCGA-E2-A1IH	GLE1	SNP	Missense_Mutation	9	131287520	G	A	39	72
BRCA	TCGA-E2-A1IH	PSIP1	SNP	Splice_Site	9	15489983	C	A	18	100
BRCA	TCGA-E2-A1II	TUBG1	SNP	Silent	17	40762178	G	A	35	68
BRCA	TCGA-E2-A1II	TP53	SNP	Splice_Site	17	7578556	T	G	55	80
BRCA	TCGA-E2-A1II	DCC	SNP	Missense_Mutation	18	50278619	C	G	32	95
BRCA	TCGA-E2-A1II	SAMD1	SNP	Missense_Mutation	19	14199928	T	G	59	58
BRCA	TCGA-E2-A1II	SLC5A5	SNP	Missense_Mutation	19	17986867	G	A	38	41
BRCA	TCGA-E2-A1II	GRIK5	SNP	Missense_Mutation	19	42569462	C	T	23	69
BRCA	TCGA-E2-A1II	BCL2L11	SNP	Missense_Mutation	2	111886207	T	A	58	52
BRCA	TCGA-E2-A1II	PLCG1	SNP	Missense_Mutation	20	39798164	T	A	52	91
BRCA	TCGA-E2-A1II	GTPBP5	SNP	Missense_Mutation	20	60772932	C	G	31	89
BRCA	TCGA-E2-A1II	ZNF275	SNP	Silent	23	152612458	G	A	36	54
BRCA	TCGA-E2-A1II	IL1RAPL1	SNP	Silent	23	29935696	T	G	64	52
BRCA	TCGA-E2-A1II	SHROOM4	SNP	Missense_Mutation	23	50377007	T	G	55	49
BRCA	TCGA-E2-A1II	HUWE1	SNP	Missense_Mutation	23	53562452	A	C	1	85
BRCA	TCGA-E2-A1II	FAAH2	SNP	Silent	23	57358083	A	G	7	46
BRCA	TCGA-E2-A1II	PCDH19	SNP	Missense_Mutation	23	99662058	C	G	26	99
BRCA	TCGA-E2-A1II	PCDH10	SNP	Silent	4	134073920	C	T	21	70
BRCA	TCGA-E2-A1II	MAML1	SNP	Missense_Mutation	5	179200977	A	T	4	48
BRCA	TCGA-E2-A1II	NMBR	SNP	Missense_Mutation	6	142396871	T	A	58	88
BRCA	TCGA-E2-A1II	TMEM181	SNP	Silent	6	159029468	G	C	48	49
BRCA	TCGA-E2-A1II	ZNF292	SNP	Missense_Mutation	6	87965080	T	G	64	75
BRCA	TCGA-E2-A1II	CCM2	SNP	Missense_Mutation	7	45113873	G	A	38	70
BRCA	TCGA-E2-A1II	UBR5	SNP	Missense_Mutation	8	103297830	T	C	50	93
BRCA	TCGA-E2-A1II	WHSC1L1	SNP	Missense_Mutation	8	38162915	C	T	19	98
BRCA	TCGA-E2-A1IJ	OPN4	SNP	Missense_Mutation	10	88421081	G	A	40	65
BRCA	TCGA-E2-A1IJ	ATM	SNP	Missense_Mutation	11	108098605	G	T	46	65
BRCA	TCGA-E2-A1IJ	TBX5	SNP	Missense_Mutation	12	114793417	C	T	19	62
BRCA	TCGA-E2-A1IJ	TSC22D1	SNP	Missense_Mutation	13	45010182	T	C	49	91
BRCA	TCGA-E2-A1IJ	SLX4	SNP	Missense_Mutation	16	3656563	C	A	29	54
BRCA	TCGA-E2-A1IJ	CDH1	INS	Frame_Shift_Ins	16	68857397	-	T	36	74
BRCA	TCGA-E2-A1IJ	TNRC6C	SNP	Nonsense_Mutation	17	76089144	G	A	44	99
BRCA	TCGA-E2-A1IJ	SOGA1	SNP	Silent	20	35443694	C	A	29	61
BRCA	TCGA-E2-A1IJ	FAM153A	SNP	Missense_Mutation	5	177171957	G	A	40	50
BRCA	TCGA-E2-A1IJ	C6orf57	SNP	Missense_Mutation	6	71298411	G	T	38	97
BRCA	TCGA-E2-A1IJ	TAS2R38	SNP	Missense_Mutation	7	141672880	G	T	42	51
BRCA	TCGA-E2-A1IJ	GPNMB	SNP	Missense_Mutation	7	23309653	A	C	7	60
BRCA	TCGA-E2-A1IJ	GSR	SNP	Silent	8	30557645	G	A	34	50
BRCA	TCGA-E2-A1IJ	NUP214	SNP	Silent	9	134027158	T	G	56	40
BRCA	TCGA-E2-A1IK	SLC9A1	SNP	Missense_Mutation	1	27427750	G	T	40	96
BRCA	TCGA-E2-A1IK	PTP4A2	SNP	Missense_Mutation	1	32384627	T	A	51	89
BRCA	TCGA-E2-A1IK	MACF1	SNP	Missense_Mutation	1	39798985	A	G	9	60
BRCA	TCGA-E2-A1IK	RASGEF1A	SNP	Missense_Mutation	10	43696327	T	A	59	82
BRCA	TCGA-E2-A1IK	PIK3C2G	SNP	Missense_Mutation	12	18443835	A	C	9	68
BRCA	TCGA-E2-A1IK	ADAMTSL3	SNP	Missense_Mutation	15	84506850	T	A	55	92
BRCA	TCGA-E2-A1IK	CLEC16A	SNP	Missense_Mutation	16	11154805	G	A	37	58
BRCA	TCGA-E2-A1IK	RPGRIP1L	SNP	Silent	16	53706824	T	C	60	50
BRCA	TCGA-E2-A1IK	CMIP	SNP	Missense_Mutation	16	81737574	G	T	39	83
BRCA	TCGA-E2-A1IK	NWD1	SNP	Silent	19	16905357	C	T	31	41
BRCA	TCGA-E2-A1IK	NR2C2	SNP	Missense_Mutation	3	15094988	G	C	34	56
BRCA	TCGA-E2-A1IK	SETD2	INS	Frame_Shift_Ins	3	47058736	-	T	40	48
BRCA	TCGA-E2-A1IK	SHROOM1	SNP	Missense_Mutation	5	132159726	C	T	31	57
BRCA	TCGA-E2-A1IL	FMN2	SNP	Missense_Mutation	1	240370352	C	T	30	86
BRCA	TCGA-E2-A1IL	JAM3	SNP	Missense_Mutation	11	134014849	G	A	38	57
BRCA	TCGA-E2-A1IL	TNKS1BP1	SNP	Silent	11	57077320	G	A	38	28
BRCA	TCGA-E2-A1IL	RELT	SNP	Silent	11	73103329	T	G	55	31
BRCA	TCGA-E2-A1IL	AGBL1	SNP	Missense_Mutation	15	86768172	G	T	46	79
BRCA	TCGA-E2-A1IL	CNTD1	DEL	Frame_Shift_Del	17	40956304	AA	-	13	59
BRCA	TCGA-E2-A1IL	ZNF232	SNP	Missense_Mutation	17	5009336	T	G	51	57
BRCA	TCGA-E2-A1IL	PGPEP1	SNP	Silent	19	18474258	C	T	24	48
BRCA	TCGA-E2-A1IL	ZNF846	DEL	Frame_Shift_Del	19	9868344	CG	-	31	55
BRCA	TCGA-E2-A1IL	RGPD4	SNP	Silent	2	108473295	G	T	42	46
BRCA	TCGA-E2-A1IL	PLEKHB2	SNP	Missense_Mutation	2	131883435	G	A	46	77
BRCA	TCGA-E2-A1IL	PTPRT	SNP	Silent	20	40828001	G	T	43	36
BRCA	TCGA-E2-A1IL	ARFGEF2	SNP	Missense_Mutation	20	47607613	T	C	56	93
BRCA	TCGA-E2-A1IL	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A1IL	ANKRD17	SNP	Silent	4	73942663	A	C	11	56
BRCA	TCGA-E2-A1IL	GFOD1	SNP	Silent	6	13365419	G	A	38	39
BRCA	TCGA-E2-A1IL	SYNE1	SNP	Nonsense_Mutation	6	152751745	G	A	37	72
BRCA	TCGA-E2-A1IL	SERPINB6	SNP	Missense_Mutation	6	2955880	C	T	23	73
BRCA	TCGA-E2-A1IL	TBCC	SNP	Missense_Mutation	6	42712938	A	G	13	88
BRCA	TCGA-E2-A1IL	NEUROD6	SNP	Missense_Mutation	7	31378167	G	A	38	74
BRCA	TCGA-E2-A1IL	AVL9	SNP	Missense_Mutation	7	32598971	T	G	61	54
BRCA	TCGA-E2-A1IL	NME8	SNP	Missense_Mutation	7	37896882	G	C	34	70
BRCA	TCGA-E2-A1IL	SIT1	SNP	Silent	9	35649944	G	A	39	21
BRCA	TCGA-E2-A1IN	UBE4B	SNP	Silent	1	10166258	C	G	32	58
BRCA	TCGA-E2-A1IN	CELSR2	SNP	Missense_Mutation	1	109793212	C	T	31	57
BRCA	TCGA-E2-A1IN	C1orf127	SNP	Missense_Mutation	1	11008331	C	G	30	61
BRCA	TCGA-E2-A1IN	C1orf127	SNP	Missense_Mutation	1	11008427	G	T	47	54
BRCA	TCGA-E2-A1IN	MTOR	SNP	Missense_Mutation	1	11270881	C	G	32	99
BRCA	TCGA-E2-A1IN	NRAS	SNP	Missense_Mutation	1	115251203	C	T	29	100
BRCA	TCGA-E2-A1IN	CD58	SNP	Missense_Mutation	1	117078619	G	A	45	54
BRCA	TCGA-E2-A1IN	CGN	SNP	Missense_Mutation	1	151509297	G	A	40	94
BRCA	TCGA-E2-A1IN	PGLYRP3	SNP	Silent	1	153283097	G	C	41	40
BRCA	TCGA-E2-A1IN	DCST2	SNP	Nonsense_Mutation	1	154991075	G	C	45	59
BRCA	TCGA-E2-A1IN	FCGR3A	SNP	Silent	1	161518251	G	C	33	52
BRCA	TCGA-E2-A1IN	SPATA21	SNP	Missense_Mutation	1	16736350	C	G	32	54
BRCA	TCGA-E2-A1IN	SERPINC1	SNP	Missense_Mutation	1	173884020	A	G	7	72
BRCA	TCGA-E2-A1IN	FAM5B	SNP	Missense_Mutation	1	177250316	G	T	45	71
BRCA	TCGA-E2-A1IN	PTPRC	SNP	Nonsense_Mutation	1	198691597	C	G	29	61
BRCA	TCGA-E2-A1IN	DDX59	SNP	Missense_Mutation	1	200635322	C	G	29	63
BRCA	TCGA-E2-A1IN	PIGR	SNP	Missense_Mutation	1	207106470	C	G	29	50
BRCA	TCGA-E2-A1IN	PCNXL2	SNP	Nonsense_Mutation	1	233161098	C	A	31	99
BRCA	TCGA-E2-A1IN	BSDC1	SNP	Missense_Mutation	1	32843862	G	A	45	78
BRCA	TCGA-E2-A1IN	RAVER2	SNP	Silent	1	65243506	C	T	32	53
BRCA	TCGA-E2-A1IN	PTGER3	SNP	Silent	1	71512883	C	T	23	49
BRCA	TCGA-E2-A1IN	KIAA1107	SNP	Missense_Mutation	1	92649701	G	C	33	75
BRCA	TCGA-E2-A1IN	WDR11	SNP	Missense_Mutation	10	122622406	A	G	1	93
BRCA	TCGA-E2-A1IN	LRRC27	SNP	Missense_Mutation	10	134161507	G	C	33	56
BRCA	TCGA-E2-A1IN	PFKP	SNP	Missense_Mutation	10	3149487	G	A	45	85
BRCA	TCGA-E2-A1IN	PRKG1	SNP	Missense_Mutation	10	53227489	A	T	3	77
BRCA	TCGA-E2-A1IN	FAM208B	SNP	Missense_Mutation	10	5788925	C	G	29	55
BRCA	TCGA-E2-A1IN	CTNNA3	SNP	Missense_Mutation	10	67862936	C	G	32	60
BRCA	TCGA-E2-A1IN	TET1	SNP	Missense_Mutation	10	70450589	C	G	24	56
BRCA	TCGA-E2-A1IN	PSAP	SNP	Silent	10	73579279	C	T	32	68
BRCA	TCGA-E2-A1IN	PDE6C	SNP	Missense_Mutation	10	95415556	G	C	45	83
BRCA	TCGA-E2-A1IN	DCUN1D5	SNP	Missense_Mutation	11	102935019	C	T	29	100
BRCA	TCGA-E2-A1IN	PRDM11	SNP	Silent	11	45203410	C	T	30	52
BRCA	TCGA-E2-A1IN	OR9G1	SNP	Silent	11	56468331	A	C	5	36
BRCA	TCGA-E2-A1IN	ZDHHC5	SNP	Silent	11	57457520	C	T	26	66
BRCA	TCGA-E2-A1IN	SYT12	SNP	Missense_Mutation	11	66807366	G	C	45	82
BRCA	TCGA-E2-A1IN	ADRBK1	SNP	Silent	11	67048617	C	T	27	41
BRCA	TCGA-E2-A1IN	OR10A6	SNP	Missense_Mutation	11	7949551	C	G	31	49
BRCA	TCGA-E2-A1IN	FAT3	SNP	Silent	11	92568091	G	A	47	51
BRCA	TCGA-E2-A1IN	LHX5	SNP	Missense_Mutation	12	113906151	G	T	44	69
BRCA	TCGA-E2-A1IN	SLC15A5	SNP	Missense_Mutation	12	16430536	A	C	5	48
BRCA	TCGA-E2-A1IN	CNTN1	SNP	Missense_Mutation	12	41419117	G	C	45	58
BRCA	TCGA-E2-A1IN	ADAMTS20	SNP	Missense_Mutation	12	43896138	C	T	29	54
BRCA	TCGA-E2-A1IN	KRT79	SNP	Silent	12	53225306	G	C	33	66
BRCA	TCGA-E2-A1IN	STAC3	SNP	Missense_Mutation	12	57637603	C	G	30	96
BRCA	TCGA-E2-A1IN	DTX3	SNP	Missense_Mutation	12	58002372	G	A	45	94
BRCA	TCGA-E2-A1IN	LLPH	SNP	Silent	12	66522788	G	A	45	65
BRCA	TCGA-E2-A1IN	PPFIA2	SNP	Missense_Mutation	12	82147853	G	A	37	75
BRCA	TCGA-E2-A1IN	DEGS2	SNP	Missense_Mutation	14	100625894	C	G	31	90
BRCA	TCGA-E2-A1IN	TDRD9	SNP	Missense_Mutation	14	104506621	G	A	37	74
BRCA	TCGA-E2-A1IN	OR4N5	SNP	Missense_Mutation	14	20612635	A	G	16	46
BRCA	TCGA-E2-A1IN	KTN1	SNP	Silent	14	56107112	C	T	32	55
BRCA	TCGA-E2-A1IN	ACOT1	SNP	Missense_Mutation	14	74004171	G	A	41	76
BRCA	TCGA-E2-A1IN	PPP4R4	SNP	Missense_Mutation	14	94718190	C	G	32	51
BRCA	TCGA-E2-A1IN	CERS3	SNP	Missense_Mutation	15	100996101	C	T	29	48
BRCA	TCGA-E2-A1IN	DUOX1	SNP	Missense_Mutation	15	45454016	C	G	32	58
BRCA	TCGA-E2-A1IN	FBN1	SNP	Missense_Mutation	15	48787352	G	A	38	100
BRCA	TCGA-E2-A1IN	MYO9A	SNP	Missense_Mutation	15	72180453	G	A	45	58
BRCA	TCGA-E2-A1IN	SENP8	SNP	Missense_Mutation	15	72432133	G	A	45	88
BRCA	TCGA-E2-A1IN	SEMA7A	SNP	Missense_Mutation	15	74704309	G	A	46	65
BRCA	TCGA-E2-A1IN	TBC1D2B	SNP	Missense_Mutation	15	78305373	C	T	29	59
BRCA	TCGA-E2-A1IN	CRTC3	SNP	Missense_Mutation	15	91136895	C	T	31	70
BRCA	TCGA-E2-A1IN	CACNA1H	SNP	Missense_Mutation	16	1256238	A	G	10	85
BRCA	TCGA-E2-A1IN	MKL2	SNP	Silent	16	14339391	C	T	29	53
BRCA	TCGA-E2-A1IN	HIRIP3	SNP	Missense_Mutation	16	30004965	C	T	29	57
BRCA	TCGA-E2-A1IN	ZNF629	SNP	Nonsense_Mutation	16	30793337	G	C	45	65
BRCA	TCGA-E2-A1IN	VKORC1	SNP	Silent	16	31105925	G	C	33	63
BRCA	TCGA-E2-A1IN	ITGAM	SNP	Silent	16	31336602	G	T	47	54
BRCA	TCGA-E2-A1IN	C16orf5	SNP	Missense_Mutation	16	4563801	G	C	35	89
BRCA	TCGA-E2-A1IN	MYH13	SNP	Missense_Mutation	17	10206539	A	T	10	52
BRCA	TCGA-E2-A1IN	MYH2	SNP	Silent	17	10447097	G	A	45	72
BRCA	TCGA-E2-A1IN	SPAG5	SNP	Missense_Mutation	17	26918847	C	G	32	66
BRCA	TCGA-E2-A1IN	MAPT	SNP	Missense_Mutation	17	44067416	C	G	32	58
BRCA	TCGA-E2-A1IN	ACSF2	SNP	Silent	17	48538641	C	T	32	52
BRCA	TCGA-E2-A1IN	MPO	SNP	Silent	17	56356465	G	C	37	39
BRCA	TCGA-E2-A1IN	DLG4	SNP	Missense_Mutation	17	7100285	G	A	37	61
BRCA	TCGA-E2-A1IN	POLR2A	SNP	Silent	17	7404270	G	A	33	69
BRCA	TCGA-E2-A1IN	TP53	SNP	Missense_Mutation	17	7578460	A	C	10	89
BRCA	TCGA-E2-A1IN	DNAH2	SNP	Missense_Mutation	17	7736442	G	C	33	76
BRCA	TCGA-E2-A1IN	CHD3	SNP	Missense_Mutation	17	7796626	C	G	30	94
BRCA	TCGA-E2-A1IN	FASN	SNP	Missense_Mutation	17	80038680	C	G	32	68
BRCA	TCGA-E2-A1IN	ARHGEF15	SNP	Silent	17	8216367	G	A	38	40
BRCA	TCGA-E2-A1IN	LAMA3	SNP	Silent	18	21417017	C	T	17	64
BRCA	TCGA-E2-A1IN	ZNF396	SNP	Missense_Mutation	18	32949307	G	C	33	72
BRCA	TCGA-E2-A1IN	ABCA7	SNP	Nonsense_Mutation	19	1045035	C	G	29	63
BRCA	TCGA-E2-A1IN	CIRBP	SNP	Missense_Mutation	19	1272306	C	G	30	57
BRCA	TCGA-E2-A1IN	APC2	SNP	Missense_Mutation	19	1465771	G	A	37	56
BRCA	TCGA-E2-A1IN	RFXANK	SNP	Splice_site	19	19312527	G	A	45	61
BRCA	TCGA-E2-A1IN	ZNF536	SNP	Silent	19	31039733	C	T	29	24
BRCA	TCGA-E2-A1IN	APBA3	SNP	Missense_Mutation	19	3759707	C	T	32	58
BRCA	TCGA-E2-A1IN	SUPT5H	SNP	Silent	19	39955656	C	G	29	77
BRCA	TCGA-E2-A1IN	ZNF574	SNP	Missense_Mutation	19	42585045	G	A	45	81
BRCA	TCGA-E2-A1IN	ZNF235	SNP	Missense_Mutation	19	44791480	C	G	32	73
BRCA	TCGA-E2-A1IN	CEACAM16	SNP	Silent	19	45209092	C	T	21	58
BRCA	TCGA-E2-A1IN	NUCB1	SNP	Silent	19	49424449	G	A	45	75
BRCA	TCGA-E2-A1IN	CCDC155	SNP	Missense_Mutation	19	49902741	G	C	45	57
BRCA	TCGA-E2-A1IN	SCAF1	SNP	Silent	19	50161137	C	T	23	43
BRCA	TCGA-E2-A1IN	ZNF432	SNP	Missense_Mutation	19	52537854	C	G	17	60
BRCA	TCGA-E2-A1IN	GCC2	SNP	Silent	2	109102990	A	G	7	42
BRCA	TCGA-E2-A1IN	NEB	SNP	Silent	2	152541307	A	G	8	52
BRCA	TCGA-E2-A1IN	WDR35	SNP	Silent	2	20113974	G	A	33	54
BRCA	TCGA-E2-A1IN	FAM124B	SNP	Missense_Mutation	2	225244906	A	C	3	43
BRCA	TCGA-E2-A1IN	SP110	SNP	Missense_Mutation	2	231077589	C	T	20	50
BRCA	TCGA-E2-A1IN	GPR113	SNP	Silent	2	26534505	G	A	45	51
BRCA	TCGA-E2-A1IN	RTN4	SNP	Missense_Mutation	2	55253275	C	T	29	86
BRCA	TCGA-E2-A1IN	KCMF1	SNP	Missense_Mutation	2	85280380	G	A	33	75
BRCA	TCGA-E2-A1IN	IDH3B	SNP	Missense_Mutation	20	2640352	G	C	46	73
BRCA	TCGA-E2-A1IN	SGK2	SNP	Missense_Mutation	20	42204933	G	A	39	70
BRCA	TCGA-E2-A1IN	STK4	SNP	Missense_Mutation	20	43615911	G	A	33	100
BRCA	TCGA-E2-A1IN	SLC12A5	SNP	Missense_Mutation	20	44684870	G	A	33	96
BRCA	TCGA-E2-A1IN	BCAS4	SNP	Missense_Mutation	20	49493134	C	T	31	41
BRCA	TCGA-E2-A1IN	ATP9A	SNP	Missense_Mutation	20	50286620	G	C	45	77
BRCA	TCGA-E2-A1IN	COL9A3	SNP	Silent	20	61458148	G	A	41	50
BRCA	TCGA-E2-A1IN	RTEL1	SNP	Silent	20	62293270	C	T	29	51
BRCA	TCGA-E2-A1IN	URB1	SNP	Silent	21	33709732	G	A	38	21
BRCA	TCGA-E2-A1IN	SYNJ1	SNP	Splice_Site	21	34012090	C	G	32	89
BRCA	TCGA-E2-A1IN	DEPDC5	SNP	Silent	22	32180825	G	T	45	62
BRCA	TCGA-E2-A1IN	APOL6	SNP	Missense_Mutation	22	36054859	C	G	32	75
BRCA	TCGA-E2-A1IN	PKDREJ	SNP	Silent	22	46656331	A	T	3	43
BRCA	TCGA-E2-A1IN	ODZ1	SNP	Missense_Mutation	23	123539030	C	T	32	97
BRCA	TCGA-E2-A1IN	DCAF12L2	SNP	Silent	23	125298870	A	T	11	48
BRCA	TCGA-E2-A1IN	PHF6	SNP	Missense_Mutation	23	133547523	G	A	45	92
BRCA	TCGA-E2-A1IN	MOSPD2	SNP	Missense_Mutation	23	14915213	C	G	29	67
BRCA	TCGA-E2-A1IN	PTCHD1	SNP	Missense_Mutation	23	23397794	G	C	33	64
BRCA	TCGA-E2-A1IN	GNL3L	SNP	Splice_Site	23	54586952	G	A	33	81
BRCA	TCGA-E2-A1IN	C3orf30	SNP	Missense_Mutation	3	118865557	G	T	44	44
BRCA	TCGA-E2-A1IN	SEMA5B	SNP	Nonsense_Mutation	3	122642520	G	A	47	99
BRCA	TCGA-E2-A1IN	ATR	SNP	Missense_Mutation	3	142266743	C	T	32	88
BRCA	TCGA-E2-A1IN	ANKRD28	SNP	Missense_Mutation	3	15727589	C	T	32	100
BRCA	TCGA-E2-A1IN	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-E2-A1IN	PIK3CA	SNP	Missense_Mutation	3	178947827	G	T	48	98
BRCA	TCGA-E2-A1IN	LRCH3	SNP	Nonsense_Mutation	3	197574833	G	T	45	81
BRCA	TCGA-E2-A1IN	SCN5A	DNP	Missense_Mutation	3	38645493	TG	AA	55	52
BRCA	TCGA-E2-A1IN	SLC25A38	SNP	Missense_Mutation	3	39425264	G	A	33	71
BRCA	TCGA-E2-A1IN	COL7A1	SNP	Missense_Mutation	3	48609475	C	T	29	89
BRCA	TCGA-E2-A1IN	HEMK1	SNP	Missense_Mutation	3	50608618	C	T	29	61
BRCA	TCGA-E2-A1IN	CACNA1D	SNP	Missense_Mutation	3	53531432	C	G	32	88
BRCA	TCGA-E2-A1IN	DNASE1L3	SNP	Missense_Mutation	3	58190568	C	G	29	79
BRCA	TCGA-E2-A1IN	PRICKLE2	SNP	Silent	3	64133158	G	A	46	58
BRCA	TCGA-E2-A1IN	AGXT2L1	SNP	Missense_Mutation	4	109669230	C	G	32	62
BRCA	TCGA-E2-A1IN	UVSSA	SNP	Silent	4	1348587	C	G	29	56
BRCA	TCGA-E2-A1IN	FBXL5	SNP	Silent	4	15638232	G	A	45	72
BRCA	TCGA-E2-A1IN	POLN	SNP	Missense_Mutation	4	2210055	C	G	32	52
BRCA	TCGA-E2-A1IN	LGI2	SNP	Missense_Mutation	4	25005818	C	G	18	88
BRCA	TCGA-E2-A1IN	FAM114A1	SNP	Missense_Mutation	4	38907253	G	A	45	53
BRCA	TCGA-E2-A1IN	PPEF2	SNP	Missense_Mutation	4	76805791	G	T	41	52
BRCA	TCGA-E2-A1IN	HELQ	SNP	Missense_Mutation	4	84361040	T	C	62	59
BRCA	TCGA-E2-A1IN	DAP	SNP	Missense_Mutation	5	10681199	C	G	32	57
BRCA	TCGA-E2-A1IN	DNAH5	SNP	Missense_Mutation	5	13769169	G	A	42	100
BRCA	TCGA-E2-A1IN	UBE2D2	SNP	Missense_Mutation	5	138980017	G	A	45	89
BRCA	TCGA-E2-A1IN	PCDHA3	SNP	Missense_Mutation	5	140180926	C	G	31	50
BRCA	TCGA-E2-A1IN	CSNK1A1	SNP	Silent	5	148885086	G	C	35	65
BRCA	TCGA-E2-A1IN	SLU7	SNP	Nonsense_Mutation	5	159842203	C	T	30	85
BRCA	TCGA-E2-A1IN	ADCY2	SNP	Silent	5	7709482	C	T	19	49
BRCA	TCGA-E2-A1IN	AKD1	SNP	Missense_Mutation	6	109814642	C	G	32	81
BRCA	TCGA-E2-A1IN	NHSL1	SNP	Missense_Mutation	6	138754770	G	C	43	96
BRCA	TCGA-E2-A1IN	MSH5	SNP	Missense_Mutation	6	31730243	C	T	30	61
BRCA	TCGA-E2-A1IN	ZBTB22	SNP	Silent	6	33283626	G	A	45	49
BRCA	TCGA-E2-A1IN	USP49	SNP	Missense_Mutation	6	41774547	C	G	29	58
BRCA	TCGA-E2-A1IN	RIOK1	SNP	Silent	6	7405582	C	G	32	54
BRCA	TCGA-E2-A1IN	PIK3CG	SNP	Missense_Mutation	7	106509345	G	A	46	55
BRCA	TCGA-E2-A1IN	FOXP2	SNP	Missense_Mutation	7	114066652	C	A	28	97
BRCA	TCGA-E2-A1IN	PLXNA4	SNP	Missense_Mutation	7	132192988	C	G	32	64
BRCA	TCGA-E2-A1IN	SDK1	SNP	Silent	7	4213862	G	A	43	58
BRCA	TCGA-E2-A1IN	ZMIZ2	SNP	Missense_Mutation	7	44802875	G	T	39	98
BRCA	TCGA-E2-A1IN	POM121C	SNP	Missense_Mutation	7	75070302	C	G	32	70
BRCA	TCGA-E2-A1IN	TNFRSF11B	SNP	Missense_Mutation	8	119941001	C	T	29	78
BRCA	TCGA-E2-A1IN	ZNF572	SNP	Missense_Mutation	8	125988660	A	T	2	52
BRCA	TCGA-E2-A1IN	TG	SNP	Missense_Mutation	8	133913623	G	C	33	61
BRCA	TCGA-E2-A1IN	LY6K	SNP	Missense_Mutation	8	143784680	C	T	29	38
BRCA	TCGA-E2-A1IN	GPT	SNP	Missense_Mutation	8	145730656	G	A	37	54
BRCA	TCGA-E2-A1IN	PPP2R2A	SNP	Silent	8	26221289	C	T	32	59
BRCA	TCGA-E2-A1IN	LETM2	SNP	Nonsense_Mutation	8	38258464	C	T	29	99
BRCA	TCGA-E2-A1IN	UBE2V2	SNP	Missense_Mutation	8	48962528	C	G	30	99
BRCA	TCGA-E2-A1IN	ST18	SNP	Silent	8	53038649	A	T	7	40
BRCA	TCGA-E2-A1IN	ZC2HC1A	SNP	Missense_Mutation	8	79629583	C	G	32	69
BRCA	TCGA-E2-A1IN	PLEKHF2	SNP	Missense_Mutation	8	96166542	C	G	29	64
BRCA	TCGA-E2-A1IN	ZNF462	SNP	Missense_Mutation	9	109773294	G	A	33	86
BRCA	TCGA-E2-A1IN	SVEP1	SNP	Missense_Mutation	9	113265399	C	T	29	82
BRCA	TCGA-E2-A1IN	C9orf50	SNP	Silent	9	132382053	G	T	38	57
BRCA	TCGA-E2-A1IN	DDX31	SNP	Splice_site	9	135513749	C	T	29	44
BRCA	TCGA-E2-A1IN	C9orf96	SNP	Missense_Mutation	9	136270506	C	A	26	49
BRCA	TCGA-E2-A1IN	VAV2	SNP	Silent	9	136661557	G	C	33	56
BRCA	TCGA-E2-A1IN	IFNA17	SNP	Missense_Mutation	9	21228028	G	T	41	34
BRCA	TCGA-E2-A1IN	IFNA2	SNP	Silent	9	21384861	C	T	32	49
BRCA	TCGA-E2-A1IN	PGM5	SNP	Missense_Mutation	9	71002421	G	A	39	75
BRCA	TCGA-E2-A1IN	FAM108B1	SNP	Silent	9	74489592	C	A	30	52
BRCA	TCGA-E2-A1IN	FAM75D1	SNP	Missense_Mutation	9	84605770	G	A	40	49
BRCA	TCGA-E2-A1IN	SLC28A3	SNP	Missense_Mutation	9	86900304	C	G	32	52
BRCA	TCGA-E2-A1IN	S1PR3	SNP	Silent	9	91616635	C	T	32	62
BRCA	TCGA-E2-A1IN	ZNF169	SNP	Missense_Mutation	9	97062379	G	C	33	50
BRCA	TCGA-E2-A1IO	CFHR5	SNP	Missense_Mutation	1	196973889	C	T	23	50
BRCA	TCGA-E2-A1IO	IL22RA1	SNP	Missense_Mutation	1	24465129	G	A	40	56
BRCA	TCGA-E2-A1IO	SCGB1D4	SNP	Silent	11	62065069	G	A	40	37
BRCA	TCGA-E2-A1IO	INTS6	SNP	Missense_Mutation	13	51950260	A	T	12	59
BRCA	TCGA-E2-A1IO	RNF111	DEL	In_Frame_Del	15	59350720	GCAATAGTACCACTG	-	34	67
BRCA	TCGA-E2-A1IO	MYH1	SNP	Missense_Mutation	17	10415212	G	T	46	100
BRCA	TCGA-E2-A1IO	ZNF207	SNP	Splice_Site	17	30690005	T	C	57	89
BRCA	TCGA-E2-A1IO	TP53	INS	Frame_Shift_Ins	17	7578278	-	A	41	68
BRCA	TCGA-E2-A1IO	U2AF1	SNP	Missense_Mutation	21	44514780	C	T	19	99
BRCA	TCGA-E2-A1IO	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-E2-A1IO	PCDHB15	SNP	Missense_Mutation	5	140626431	C	A	30	97
BRCA	TCGA-E2-A1IO	FST	INS	Frame_Shift_Ins	5	52781027	-	T	20	61
BRCA	TCGA-E2-A1IO	FAM135B	SNP	Missense_Mutation	8	139164616	C	T	31	62
BRCA	TCGA-E2-A1IO	FAM75A6	SNP	Missense_Mutation	9	43627675	C	A	18	44
BRCA	TCGA-E2-A1IU	MST1P9	INS	Frame_Shift_Ins	1	17087543	-	A	59	48
BRCA	TCGA-E2-A1IU	REN	SNP	Missense_Mutation	1	204129737	C	T	27	51
BRCA	TCGA-E2-A1IU	PIK3C2B	SNP	Missense_Mutation	1	204425132	G	T	34	82
BRCA	TCGA-E2-A1IU	PTCHD3	SNP	Missense_Mutation	10	27687621	C	T	31	51
BRCA	TCGA-E2-A1IU	NAMPTL	SNP	Missense_Mutation	10	36811974	C	A	30	63
BRCA	TCGA-E2-A1IU	OR8U1	SNP	Silent	11	56143720	C	T	29	52
BRCA	TCGA-E2-A1IU	EIF2B1	SNP	Missense_Mutation	12	124110991	C	G	18	62
BRCA	TCGA-E2-A1IU	OR11H12	SNP	Missense_Mutation	14	19378395	A	G	15	52
BRCA	TCGA-E2-A1IU	ASXL3	SNP	Missense_Mutation	18	31326555	G	A	37	99
BRCA	TCGA-E2-A1IU	ZNF532	SNP	Missense_Mutation	18	56586060	G	C	35	89
BRCA	TCGA-E2-A1IU	PRKACA	SNP	Missense_Mutation	19	14208444	A	T	5	85
BRCA	TCGA-E2-A1IU	DOCK10	SNP	Missense_Mutation	2	225662592	G	T	38	99
BRCA	TCGA-E2-A1IU	C20orf72	SNP	Silent	20	17950658	C	T	20	50
BRCA	TCGA-E2-A1IU	TMPRSS2	SNP	Splice_site	21	42838079	G	T	46	62
BRCA	TCGA-E2-A1IU	ZBED1	SNP	Silent	23	2407843	C	T	31	43
BRCA	TCGA-E2-A1IU	C5orf56	SNP	Nonsense_Mutation	5	131796262	C	T	29	52
BRCA	TCGA-E2-A1IU	FAM71B	SNP	Silent	5	156589497	C	T	32	60
BRCA	TCGA-E2-A1IU	PIK3R1	INS	In_Frame_Ins	5	67591136	-	GAGACC	11	69
BRCA	TCGA-E2-A1IU	GMDS	SNP	Silent	6	1930370	T	C	60	51
BRCA	TCGA-E2-A1IU	HIST1H2AK	SNP	Missense_Mutation	6	27805735	T	C	56	88
BRCA	TCGA-E2-A1IU	EPPK1	SNP	Missense_Mutation	8	144945188	C	G	23	52
BRCA	TCGA-E2-A1IU	CHD7	SNP	Missense_Mutation	8	61766023	G	T	41	80
BRCA	TCGA-E2-A1IU	ZNF462	SNP	Silent	9	109687060	G	A	37	70
BRCA	TCGA-E2-A1IU	TYRP1	SNP	Nonsense_Mutation	9	12698600	G	A	42	99
BRCA	TCGA-E2-A1L6	DCAF6	SNP	Missense_Mutation	1	168032951	C	T	23	84
BRCA	TCGA-E2-A1L6	SELL	SNP	Missense_Mutation	1	169677935	G	T	46	47
BRCA	TCGA-E2-A1L6	SRGAP2	SNP	Missense_Mutation	1	206574931	G	A	38	87
BRCA	TCGA-E2-A1L6	ANKRD30A	SNP	Splice_Site	10	37490161	A	G	7	58
BRCA	TCGA-E2-A1L6	TMEM26	SNP	Missense_Mutation	10	63191081	T	C	49	49
BRCA	TCGA-E2-A1L6	AP3M1	SNP	Missense_Mutation	10	75885944	G	C	44	63
BRCA	TCGA-E2-A1L6	GCN1L1	SNP	Missense_Mutation	12	120593147	C	A	26	52
BRCA	TCGA-E2-A1L6	BAZ2A	SNP	Missense_Mutation	12	56997461	C	T	31	85
BRCA	TCGA-E2-A1L6	TPPP2	SNP	Missense_Mutation	14	21500170	G	A	45	50
BRCA	TCGA-E2-A1L6	ARID3B	SNP	Missense_Mutation	15	74836605	G	A	44	57
BRCA	TCGA-E2-A1L6	COASY	DEL	In_Frame_Del	17	40715065	GCT	-	34	71
BRCA	TCGA-E2-A1L6	NEDD4L	SNP	Silent	18	56018246	C	T	20	59
BRCA	TCGA-E2-A1L6	SERPINB8	SNP	Missense_Mutation	18	61650836	G	A	46	47
BRCA	TCGA-E2-A1L6	IL27RA	SNP	Missense_Mutation	19	14150592	C	G	24	61
BRCA	TCGA-E2-A1L6	ABCD1	SNP	Silent	23	153005554	A	G	3	44
BRCA	TCGA-E2-A1L6	GK5	SNP	Silent	3	141934463	G	A	39	50
BRCA	TCGA-E2-A1L6	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A1L6	ATRIP	SNP	Silent	3	48501938	A	G	16	40
BRCA	TCGA-E2-A1L6	ARSK	SNP	Missense_Mutation	5	94927224	G	A	37	98
BRCA	TCGA-E2-A1L6	KCNK16	SNP	Missense_Mutation	6	39283076	G	A	42	49
BRCA	TCGA-E2-A1L6	PKD1L1	SNP	Nonsense_Mutation	7	47969011	G	A	37	49
BRCA	TCGA-E2-A1L6	RP1L1	DEL	In_Frame_Del	8	10469694	CTG	-	32	45
BRCA	TCGA-E2-A1L7	RXRG	SNP	Missense_Mutation	1	165398021	C	G	22	78
BRCA	TCGA-E2-A1L7	SCYL3	SNP	Silent	1	169857904	A	C	1	42
BRCA	TCGA-E2-A1L7	SPOCD1	SNP	Missense_Mutation	1	32279574	C	A	28	69
BRCA	TCGA-E2-A1L7	C1orf173	SNP	Missense_Mutation	1	75038741	C	G	20	74
BRCA	TCGA-E2-A1L7	CLCA4	SNP	Missense_Mutation	1	87045132	G	T	48	55
BRCA	TCGA-E2-A1L7	HSPA14	SNP	Missense_Mutation	10	14909121	C	G	17	96
BRCA	TCGA-E2-A1L7	TRMT112	SNP	Missense_Mutation	11	64084394	A	C	8	64
BRCA	TCGA-E2-A1L7	PRB2	SNP	Missense_Mutation	12	11546260	T	G	60	52
BRCA	TCGA-E2-A1L7	DDX47	SNP	Silent	12	12974614	A	C	5	43
BRCA	TCGA-E2-A1L7	EMP1	SNP	Missense_Mutation	12	13366467	A	G	14	50
BRCA	TCGA-E2-A1L7	OVCH1	SNP	Missense_Mutation	12	29629199	G	A	41	50
BRCA	TCGA-E2-A1L7	KCNA1	SNP	Missense_Mutation	12	5021319	A	G	8	77
BRCA	TCGA-E2-A1L7	ACVR1B	SNP	Silent	12	52387771	A	T	6	25
BRCA	TCGA-E2-A1L7	KRT75	SNP	Silent	12	52825420	G	A	40	39
BRCA	TCGA-E2-A1L7	CSAD	DEL	Frame_Shift_Del	12	53565185	GCGG	-	34	52
BRCA	TCGA-E2-A1L7	HOXC10	SNP	Silent	12	54379358	C	G	29	76
BRCA	TCGA-E2-A1L7	PIP4K2C	DEL	In_Frame_Del	12	57994636	GGCATCCACGACATCATTCGG	-	35	92
BRCA	TCGA-E2-A1L7	PTPRB	SNP	Missense_Mutation	12	71002944	G	C	48	77
BRCA	TCGA-E2-A1L7	ZAR1L	SNP	Missense_Mutation	13	32885924	G	C	42	54
BRCA	TCGA-E2-A1L7	GPC5	SNP	Missense_Mutation	13	92346012	G	C	47	60
BRCA	TCGA-E2-A1L7	C14orf102	SNP	Missense_Mutation	14	90782992	C	T	32	61
BRCA	TCGA-E2-A1L7	WHAMM	SNP	Missense_Mutation	15	83502073	A	G	4	55
BRCA	TCGA-E2-A1L7	AKAP13	SNP	Missense_Mutation	15	86284649	C	T	28	63
BRCA	TCGA-E2-A1L7	RRN3	SNP	Missense_Mutation	16	15165061	G	T	44	56
BRCA	TCGA-E2-A1L7	MYH11	SNP	Splice_Site	16	15878554	C	T	19	88
BRCA	TCGA-E2-A1L7	ABCC6	SNP	Silent	16	16284084	G	A	35	56
BRCA	TCGA-E2-A1L7	E4F1	SNP	Missense_Mutation	16	2284337	C	T	29	96
BRCA	TCGA-E2-A1L7	HYDIN	SNP	Missense_Mutation	16	70926361	C	A	18	90
BRCA	TCGA-E2-A1L7	NCOR1	DEL	Frame_Shift_Del	17	15973571	CCAGGGCTCAGTTGTGCTTTGGG	-	22	83
BRCA	TCGA-E2-A1L7	SLC4A1	SNP	Missense_Mutation	17	42335404	A	G	9	88
BRCA	TCGA-E2-A1L7	TP53	SNP	Missense_Mutation	17	7577518	T	A	51	55
BRCA	TCGA-E2-A1L7	MUM1	SNP	Silent	19	1370741	G	A	47	47
BRCA	TCGA-E2-A1L7	AKAP8	SNP	Missense_Mutation	19	15469801	T	G	62	79
BRCA	TCGA-E2-A1L7	ZNF461	SNP	Missense_Mutation	19	37129736	T	G	56	84
BRCA	TCGA-E2-A1L7	RYR1	SNP	Missense_Mutation	19	38939431	G	A	39	95
BRCA	TCGA-E2-A1L7	CYP2B6	SNP	Missense_Mutation	19	41515230	A	T	3	72
BRCA	TCGA-E2-A1L7	RPL13A	SNP	Missense_Mutation	19	49993772	C	A	18	73
BRCA	TCGA-E2-A1L7	LILRA6	SNP	Missense_Mutation	19	54743824	T	G	59	50
BRCA	TCGA-E2-A1L7	ZNF671	SNP	Missense_Mutation	19	58232994	C	T	18	52
BRCA	TCGA-E2-A1L7	TANC1	SNP	Missense_Mutation	2	160019974	C	T	25	61
BRCA	TCGA-E2-A1L7	MYT1L	SNP	Splice_site	2	1805469	T	A	55	91
BRCA	TCGA-E2-A1L7	NCKAP1	SNP	Missense_Mutation	2	183800077	T	C	58	92
BRCA	TCGA-E2-A1L7	MFSD6	SNP	Silent	2	191362340	A	C	11	49
BRCA	TCGA-E2-A1L7	DIDO1	SNP	Missense_Mutation	20	61542888	G	A	48	99
BRCA	TCGA-E2-A1L7	TLR7	SNP	Missense_Mutation	23	12903898	C	A	32	67
BRCA	TCGA-E2-A1L7	TFDP3	DNP	Missense_Mutation	23	132351078	CC	AA	30	56
BRCA	TCGA-E2-A1L7	MORC1	SNP	Missense_Mutation	3	108723692	G	T	47	51
BRCA	TCGA-E2-A1L7	DNAJB8	SNP	Missense_Mutation	3	128181838	T	A	59	49
BRCA	TCGA-E2-A1L7	ABCF3	SNP	Missense_Mutation	3	183905745	G	C	33	82
BRCA	TCGA-E2-A1L7	CRYBG3	SNP	Missense_Mutation	3	97599998	A	G	12	45
BRCA	TCGA-E2-A1L7	BRPF1	SNP	Missense_Mutation	3	9781344	A	G	8	94
BRCA	TCGA-E2-A1L7	LPHN3	SNP	Missense_Mutation	4	62542579	G	T	44	99
BRCA	TCGA-E2-A1L7	MFSD7	SNP	Silent	4	678308	G	A	41	50
BRCA	TCGA-E2-A1L7	C4orf26	SNP	Missense_Mutation	4	76489622	G	A	33	53
BRCA	TCGA-E2-A1L7	PCDHB7	SNP	Missense_Mutation	5	140553041	A	G	7	58
BRCA	TCGA-E2-A1L7	PCDHB7	SNP	Missense_Mutation	5	140554394	G	A	40	53
BRCA	TCGA-E2-A1L7	SGK1	SNP	Missense_Mutation	6	134494418	C	G	32	74
BRCA	TCGA-E2-A1L7	AHI1	SNP	Nonsense_Mutation	6	135787286	G	A	48	55
BRCA	TCGA-E2-A1L7	RSPH10B	SNP	Missense_Mutation	7	6005323	C	T	19	49
BRCA	TCGA-E2-A1L7	ANXA13	SNP	Missense_Mutation	8	124724944	T	G	56	50
BRCA	TCGA-E2-A1L7	PAPPA	SNP	Missense_Mutation	9	118997528	T	C	53	62
BRCA	TCGA-E2-A1L7	RUSC2	SNP	Missense_Mutation	9	35558483	G	T	42	100
BRCA	TCGA-E2-A1L7	SEMA4D	SNP	Missense_Mutation	9	91978680	C	T	18	71
BRCA	TCGA-E2-A1L8	NUP210L	SNP	Missense_Mutation	1	153974380	T	C	49	72
BRCA	TCGA-E2-A1L8	LMNA	SNP	Missense_Mutation	1	156104249	G	A	39	96
BRCA	TCGA-E2-A1L8	ARHGEF10L	SNP	Missense_Mutation	1	17949512	G	A	41	91
BRCA	TCGA-E2-A1L8	LAMC1	SNP	Missense_Mutation	1	183093773	A	C	12	45
BRCA	TCGA-E2-A1L8	EIF2D	SNP	Missense_Mutation	1	206769083	C	G	32	67
BRCA	TCGA-E2-A1L8	LAMB3	SNP	Missense_Mutation	1	209803184	C	T	29	97
BRCA	TCGA-E2-A1L8	CLEC12A	SNP	Missense_Mutation	12	10134707	A	C	4	49
BRCA	TCGA-E2-A1L8	GNS	SNP	Silent	12	65133264	G	A	33	52
BRCA	TCGA-E2-A1L8	SPACA7	SNP	Splice_site	13	113052452	C	T	19	45
BRCA	TCGA-E2-A1L8	CDH1	SNP	Splice_Site	16	68844245	G	A	44	91
BRCA	TCGA-E2-A1L8	DNAH9	SNP	Missense_Mutation	17	11650986	G	A	45	83
BRCA	TCGA-E2-A1L8	ATAD5	SNP	Missense_Mutation	17	29214375	C	G	18	60
BRCA	TCGA-E2-A1L8	BZRAP1	SNP	Missense_Mutation	17	56382935	T	C	60	74
BRCA	TCGA-E2-A1L8	TYK2	INS	Frame_Shift_Ins	19	10475700	-	C	62	52
BRCA	TCGA-E2-A1L8	GCC2	SNP	Missense_Mutation	2	109092242	G	T	37	48
BRCA	TCGA-E2-A1L8	ADAM23	SNP	Silent	2	207406802	A	G	9	44
BRCA	TCGA-E2-A1L8	SP100	DEL	Frame_Shift_Del	2	231334505	AAAG	-	1	53
BRCA	TCGA-E2-A1L8	ANKRD36C	SNP	Silent	2	96521224	C	T	28	68
BRCA	TCGA-E2-A1L8	RBL1	SNP	Missense_Mutation	20	35661256	T	G	50	79
BRCA	TCGA-E2-A1L8	ARHGAP6	SNP	Missense_Mutation	23	11162258	G	A	41	93
BRCA	TCGA-E2-A1L8	AKAP4	SNP	Silent	23	49958245	C	T	26	50
BRCA	TCGA-E2-A1L8	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E2-A1L8	ENPEP	SNP	Missense_Mutation	4	111397859	G	A	40	45
BRCA	TCGA-E2-A1L8	C5orf42	SNP	Missense_Mutation	5	37169187	A	T	12	49
BRCA	TCGA-E2-A1L8	GRIK2	SNP	Silent	6	102376327	A	C	15	70
BRCA	TCGA-E2-A1L8	MEA1	SNP	Silent	6	42981072	A	G	14	48
BRCA	TCGA-E2-A1L8	MGAM	SNP	Splice_site	7	141794453	A	T	16	76
BRCA	TCGA-E2-A1L8	EIF4H	SNP	Silent	7	73609623	A	G	1	37
BRCA	TCGA-E2-A1L8	DTX2	SNP	Missense_Mutation	7	76111950	C	G	32	67
BRCA	TCGA-E2-A1L8	CNTRL	SNP	Missense_Mutation	9	123917201	C	G	32	51
BRCA	TCGA-E2-A1L8	OR1B1	SNP	Missense_Mutation	9	125391118	G	A	40	58
BRCA	TCGA-E2-A1L8	SMARCA2	SNP	Missense_Mutation	9	2054717	G	T	34	47
BRCA	TCGA-E2-A1L8	C9orf89	SNP	Missense_Mutation	9	95869982	C	G	25	70
BRCA	TCGA-E2-A1L9	CD1C	SNP	Missense_Mutation	1	158261046	T	C	50	47
BRCA	TCGA-E2-A1L9	STX6	SNP	Silent	1	180974506	G	A	37	64
BRCA	TCGA-E2-A1L9	TTC40	INS	Frame_Shift_Ins	10	134659572	-	G	27	46
BRCA	TCGA-E2-A1L9	GATA3	DEL	Frame_Shift_Del	10	8115705	AA	-	13	90
BRCA	TCGA-E2-A1L9	SYT9	SNP	Missense_Mutation	11	7439351	C	A	20	52
BRCA	TCGA-E2-A1L9	E2F7	SNP	Silent	12	77439990	C	T	29	52
BRCA	TCGA-E2-A1L9	ABHD13	SNP	Missense_Mutation	13	108882272	C	T	27	65
BRCA	TCGA-E2-A1L9	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-E2-A1L9	C14orf38	SNP	Missense_Mutation	14	60011911	G	T	34	51
BRCA	TCGA-E2-A1L9	CBFB	SNP	Splice_site	16	67070543	C	G	28	92
BRCA	TCGA-E2-A1L9	CTCF	DEL	Frame_Shift_Del	16	67644817	CGCCGGGAAGGGGG	-	19	71
BRCA	TCGA-E2-A1L9	BRCA1	SNP	Missense_Mutation	17	41244468	C	A	28	67
BRCA	TCGA-E2-A1L9	CBX2	SNP	Missense_Mutation	17	77755934	G	A	34	53
BRCA	TCGA-E2-A1L9	COL5A3	SNP	Silent	19	10084883	C	T	23	40
BRCA	TCGA-E2-A1L9	SLC1A6	SNP	Missense_Mutation	19	15079170	G	A	39	55
BRCA	TCGA-E2-A1L9	SLC40A1	SNP	Missense_Mutation	2	190428522	G	T	43	89
BRCA	TCGA-E2-A1L9	ASXL2	SNP	Missense_Mutation	2	25982469	G	A	39	98
BRCA	TCGA-E2-A1L9	CXorf36	SNP	Missense_Mutation	23	45011033	C	T	17	83
BRCA	TCGA-E2-A1L9	ELP6	SNP	Missense_Mutation	3	47545880	T	C	56	59
BRCA	TCGA-E2-A1L9	SEMA3G	SNP	Silent	3	52469820	G	A	37	23
BRCA	TCGA-E2-A1L9	DSPP	SNP	Missense_Mutation	4	88534248	T	A	49	59
BRCA	TCGA-E2-A1L9	SYNCRIP	SNP	Silent	6	86332254	T	C	62	58
BRCA	TCGA-E2-A1L9	GRM8	SNP	Silent	7	126173165	G	T	41	60
BRCA	TCGA-E2-A1L9	MLL3	INS	Frame_Shift_Ins	7	151932951	-	GG	31	96
BRCA	TCGA-E2-A1L9	MLL3	SNP	Nonsense_Mutation	7	152012230	G	A	48	91
BRCA	TCGA-E2-A1L9	SLC25A13	SNP	Missense_Mutation	7	95761189	G	A	42	98
BRCA	TCGA-E2-A1L9	IFNA21	SNP	Missense_Mutation	9	21166507	C	A	30	48
BRCA	TCGA-E2-A1LA	OR10K1	SNP	Missense_Mutation	1	158435767	G	T	43	60
BRCA	TCGA-E2-A1LA	ARID1A	SNP	Silent	1	27087442	G	A	34	65
BRCA	TCGA-E2-A1LA	ZCCHC11	SNP	Silent	1	52901105	G	C	45	86
BRCA	TCGA-E2-A1LA	BMI1	SNP	Silent	10	22618336	T	G	54	56
BRCA	TCGA-E2-A1LA	UBE4A	SNP	Missense_Mutation	11	118257271	G	C	40	100
BRCA	TCGA-E2-A1LA	C2CD2L	SNP	Missense_Mutation	11	118984672	A	T	6	87
BRCA	TCGA-E2-A1LA	MUC5B	SNP	Silent	11	1268478	G	A	42	38
BRCA	TCGA-E2-A1LA	C11orf40	SNP	Missense_Mutation	11	4594648	C	G	30	45
BRCA	TCGA-E2-A1LA	PHRF1	SNP	Silent	11	611058	C	T	17	65
BRCA	TCGA-E2-A1LA	SNX15	SNP	Missense_Mutation	11	64803030	G	C	41	86
BRCA	TCGA-E2-A1LA	SNX32	SNP	Missense_Mutation	11	65620794	G	C	35	50
BRCA	TCGA-E2-A1LA	NUMA1	SNP	Silent	11	71726410	G	T	45	53
BRCA	TCGA-E2-A1LA	ANO4	DNP	Missense_Mutation	12	101436158	TG	CA	55	94
BRCA	TCGA-E2-A1LA	MFAP5	SNP	Missense_Mutation	12	8803117	G	A	45	63
BRCA	TCGA-E2-A1LA	IFT88	SNP	Missense_Mutation	13	21217606	G	A	47	87
BRCA	TCGA-E2-A1LA	OLFM4	SNP	Silent	13	53624150	G	T	47	50
BRCA	TCGA-E2-A1LA	DEGS2	SNP	Silent	14	100615659	G	C	43	51
BRCA	TCGA-E2-A1LA	PLEKHH1	SNP	Missense_Mutation	14	68042170	A	C	16	60
BRCA	TCGA-E2-A1LA	OCA2	SNP	Missense_Mutation	15	28273032	C	T	19	40
BRCA	TCGA-E2-A1LA	SPINT1	SNP	Missense_Mutation	15	41145408	G	T	33	65
BRCA	TCGA-E2-A1LA	RPAP1	SNP	Silent	15	41820178	G	A	42	52
BRCA	TCGA-E2-A1LA	WDR72	SNP	Missense_Mutation	15	54015063	T	A	60	79
BRCA	TCGA-E2-A1LA	PARP16	SNP	Missense_Mutation	15	65553280	T	C	52	87
BRCA	TCGA-E2-A1LA	EXOC3L1	SNP	Missense_Mutation	16	67222677	G	A	42	50
BRCA	TCGA-E2-A1LA	ST3GAL2	SNP	Silent	16	70428926	A	G	7	47
BRCA	TCGA-E2-A1LA	MYBBP1A	SNP	Silent	17	4448560	A	C	6	43
BRCA	TCGA-E2-A1LA	KIF2B	SNP	Missense_Mutation	17	51902147	C	G	18	54
BRCA	TCGA-E2-A1LA	SCN4A	SNP	Missense_Mutation	17	62034778	A	G	7	85
BRCA	TCGA-E2-A1LA	C17orf80	SNP	Silent	17	71232434	A	G	7	52
BRCA	TCGA-E2-A1LA	LOXHD1	SNP	Missense_Mutation	18	44140364	G	A	39	58
BRCA	TCGA-E2-A1LA	TMX3	SNP	Missense_Mutation	18	66354909	T	A	58	82
BRCA	TCGA-E2-A1LA	JSRP1	SNP	Silent	19	2254465	G	A	39	32
BRCA	TCGA-E2-A1LA	TGFB1	SNP	Missense_Mutation	19	41838160	C	G	23	82
BRCA	TCGA-E2-A1LA	PLIN3	SNP	Missense_Mutation	19	4852082	C	G	22	65
BRCA	TCGA-E2-A1LA	ZNF835	SNP	Missense_Mutation	19	57176314	C	T	27	48
BRCA	TCGA-E2-A1LA	IL1RL1	SNP	Splice_site	2	102964405	T	A	60	51
BRCA	TCGA-E2-A1LA	RAB3GAP1	SNP	Silent	2	135851198	A	G	4	46
BRCA	TCGA-E2-A1LA	HAAO	SNP	Missense_Mutation	2	43010980	C	G	18	52
BRCA	TCGA-E2-A1LA	DEFB127	SNP	Missense_Mutation	20	139457	G	A	41	68
BRCA	TCGA-E2-A1LA	CRNKL1	SNP	Missense_Mutation	20	20033061	C	G	18	51
BRCA	TCGA-E2-A1LA	EYA2	SNP	Missense_Mutation	20	45702958	T	C	60	54
BRCA	TCGA-E2-A1LA	ZNF831	SNP	Silent	20	57768111	T	A	55	43
BRCA	TCGA-E2-A1LA	CECR2	DEL	Frame_Shift_Del	22	17983949	CG	-	23	24
BRCA	TCGA-E2-A1LA	SFI1	SNP	Splice_site	22	31998278	T	C	51	72
BRCA	TCGA-E2-A1LA	WBP2NL	SNP	Missense_Mutation	22	42422812	C	G	24	61
BRCA	TCGA-E2-A1LA	THOC2	DEL	Frame_Shift_Del	23	122755245	CTTTGTCAGA	-	32	99
BRCA	TCGA-E2-A1LA	ASMT	SNP	Silent	23	1743208	C	G	29	50
BRCA	TCGA-E2-A1LA	GNL3L	SNP	Missense_Mutation	23	54578044	G	A	41	90
BRCA	TCGA-E2-A1LA	POF1B	SNP	Silent	23	84563184	C	A	17	49
BRCA	TCGA-E2-A1LA	IFT57	SNP	Missense_Mutation	3	107925495	T	C	64	60
BRCA	TCGA-E2-A1LA	ZBED2	SNP	Missense_Mutation	3	111312772	C	A	19	61
BRCA	TCGA-E2-A1LA	COL6A5	SNP	Silent	3	130110116	T	G	53	40
BRCA	TCGA-E2-A1LA	NBEAL2	SNP	Missense_Mutation	3	47037780	T	C	50	67
BRCA	TCGA-E2-A1LA	USP19	SNP	Silent	3	49152539	C	T	31	42
BRCA	TCGA-E2-A1LA	DNAH1	SNP	Silent	3	52423503	C	T	17	49
BRCA	TCGA-E2-A1LA	CADPS	SNP	Nonsense_Mutation	3	62503858	G	A	39	100
BRCA	TCGA-E2-A1LA	NPNT	SNP	Silent	4	106890054	C	G	31	65
BRCA	TCGA-E2-A1LA	PCDH18	SNP	Missense_Mutation	4	138452231	A	C	5	94
BRCA	TCGA-E2-A1LA	C4orf51	SNP	Silent	4	146601496	A	G	8	41
BRCA	TCGA-E2-A1LA	FAM200B	SNP	Missense_Mutation	4	15690255	T	A	53	63
BRCA	TCGA-E2-A1LA	YTHDC1	SNP	Missense_Mutation	4	69179981	G	A	39	83
BRCA	TCGA-E2-A1LA	SLC2A9	SNP	Missense_Mutation	4	9922065	G	C	46	96
BRCA	TCGA-E2-A1LA	DDX41	SNP	Missense_Mutation	5	176942194	G	C	43	100
BRCA	TCGA-E2-A1LA	PRKAA1	SNP	Silent	5	40771909	A	G	4	49
BRCA	TCGA-E2-A1LA	TMEM171	SNP	Missense_Mutation	5	72419255	A	T	7	66
BRCA	TCGA-E2-A1LA	NMBR	SNP	Missense_Mutation	6	142409522	G	C	34	80
BRCA	TCGA-E2-A1LA	HIVEP2	SNP	Missense_Mutation	6	143091059	C	A	26	71
BRCA	TCGA-E2-A1LA	MLLT4	SNP	Missense_Mutation	6	168312024	A	C	3	89
BRCA	TCGA-E2-A1LA	RELN	SNP	Missense_Mutation	7	103131244	C	T	25	97
BRCA	TCGA-E2-A1LA	ASB10	SNP	Missense_Mutation	7	150883937	C	T	31	61
BRCA	TCGA-E2-A1LA	PTPRN2	SNP	Missense_Mutation	7	157364169	A	G	15	87
BRCA	TCGA-E2-A1LA	SFRP4	SNP	Missense_Mutation	7	37947171	C	G	24	52
BRCA	TCGA-E2-A1LA	TMEM74	SNP	Missense_Mutation	8	109797275	G	A	42	50
BRCA	TCGA-E2-A1LA	KRT8P11	SNP	Missense_Mutation	9	102067616	G	C	47	56
BRCA	TCGA-E2-A1LA	MUSK	SNP	Missense_Mutation	9	113547204	C	G	32	52
BRCA	TCGA-E2-A1LA	DNM1	SNP	Missense_Mutation	9	131004517	C	T	23	77
BRCA	TCGA-E2-A1LB	HRNR	SNP	Missense_Mutation	1	152188769	C	T	28	46
BRCA	TCGA-E2-A1LB	IFI16	SNP	Missense_Mutation	1	158985687	G	C	33	43
BRCA	TCGA-E2-A1LB	EIF2C4	SNP	Missense_Mutation	1	36297703	G	A	33	100
BRCA	TCGA-E2-A1LB	MGEA5	SNP	Missense_Mutation	10	103563692	T	A	50	94
BRCA	TCGA-E2-A1LB	CCDC172	SNP	Missense_Mutation	10	118100287	G	C	45	60
BRCA	TCGA-E2-A1LB	KNDC1	SNP	Missense_Mutation	10	135025332	G	C	33	63
BRCA	TCGA-E2-A1LB	MUC6	SNP	Missense_Mutation	11	1016406	G	A	33	54
BRCA	TCGA-E2-A1LB	DDI1	SNP	Silent	11	103907556	G	A	45	63
BRCA	TCGA-E2-A1LB	FERMT3	SNP	Silent	11	63974872	C	T	31	45
BRCA	TCGA-E2-A1LB	FBXW8	SNP	Missense_Mutation	12	117387426	C	T	31	90
BRCA	TCGA-E2-A1LB	KRT79	SNP	Missense_Mutation	12	53227620	T	C	54	88
BRCA	TCGA-E2-A1LB	A2ML1	SNP	Nonsense_Mutation	12	8998092	A	T	9	60
BRCA	TCGA-E2-A1LB	TMCO3	SNP	Missense_Mutation	13	114154394	A	T	7	78
BRCA	TCGA-E2-A1LB	TP53BP1	SNP	Missense_Mutation	15	43701236	T	C	57	89
BRCA	TCGA-E2-A1LB	MYO1E	SNP	Missense_Mutation	15	59523941	C	A	22	100
BRCA	TCGA-E2-A1LB	CRISPLD2	SNP	Missense_Mutation	16	84888433	G	A	37	59
BRCA	TCGA-E2-A1LB	KRTAP1-3	SNP	Missense_Mutation	17	39191003	C	G	25	69
BRCA	TCGA-E2-A1LB	ACE	SNP	Missense_Mutation	17	61557814	G	A	40	95
BRCA	TCGA-E2-A1LB	RNF213	SNP	Missense_Mutation	17	78318644	A	G	16	92
BRCA	TCGA-E2-A1LB	NACC1	SNP	Silent	19	13247176	C	G	32	58
BRCA	TCGA-E2-A1LB	ZNF816	SNP	Missense_Mutation	19	53453802	C	A	32	45
BRCA	TCGA-E2-A1LB	MUC16	SNP	Silent	19	9076601	T	G	63	49
BRCA	TCGA-E2-A1LB	LRP1B	SNP	Silent	2	141806595	C	T	32	59
BRCA	TCGA-E2-A1LB	BZW1	SNP	Silent	2	201682951	C	T	32	50
BRCA	TCGA-E2-A1LB	ADD2	SNP	Missense_Mutation	2	70905967	C	T	27	52
BRCA	TCGA-E2-A1LB	PLA2G6	SNP	Silent	22	38509509	C	T	32	52
BRCA	TCGA-E2-A1LB	VSIG1	SNP	Missense_Mutation	23	107316026	G	C	45	57
BRCA	TCGA-E2-A1LB	ZNF630	SNP	Splice_Site	23	47926259	C	T	18	50
BRCA	TCGA-E2-A1LB	SMC4	DEL	In_Frame_Del	3	160148495	AGC	-	3	51
BRCA	TCGA-E2-A1LB	SMC4	DEL	Frame_Shift_Del	3	160148940	AT	-	4	50
BRCA	TCGA-E2-A1LB	SCN5A	SNP	Nonsense_Mutation	3	38647465	C	A	30	86
BRCA	TCGA-E2-A1LB	EMCN	SNP	Nonsense_Mutation	4	101396227	G	C	45	58
BRCA	TCGA-E2-A1LB	IBSP	SNP	Missense_Mutation	4	88723821	C	T	26	76
BRCA	TCGA-E2-A1LB	CHSY3	SNP	Nonsense_Mutation	5	129520402	C	T	29	99
BRCA	TCGA-E2-A1LB	NR3C1	SNP	Missense_Mutation	5	142680112	G	A	40	99
BRCA	TCGA-E2-A1LB	LYSMD3	SNP	Nonsense_Mutation	5	89814775	G	C	45	71
BRCA	TCGA-E2-A1LB	SYNE1	SNP	Missense_Mutation	6	152631933	C	T	19	68
BRCA	TCGA-E2-A1LB	PNRC1	SNP	Missense_Mutation	6	89793494	A	C	1	68
BRCA	TCGA-E2-A1LB	ABL1	SNP	Missense_Mutation	9	133729582	G	A	45	99
BRCA	TCGA-E2-A1LB	CAMSAP1	SNP	Silent	9	138714464	C	A	26	50
BRCA	TCGA-E2-A1LG	VAV3	SNP	Missense_Mutation	1	108299921	C	G	29	99
BRCA	TCGA-E2-A1LG	FLG	SNP	Missense_Mutation	1	152276492	C	T	32	50
BRCA	TCGA-E2-A1LG	NPR1	SNP	Silent	1	153661754	C	T	29	67
BRCA	TCGA-E2-A1LG	ATP13A2	SNP	Silent	1	17312979	G	A	37	49
BRCA	TCGA-E2-A1LG	SEC16B	SNP	Missense_Mutation	1	177899016	G	A	37	75
BRCA	TCGA-E2-A1LG	ABL2	SNP	Missense_Mutation	1	179086512	C	G	32	97
BRCA	TCGA-E2-A1LG	LAMC2	SNP	Missense_Mutation	1	183187608	G	C	41	79
BRCA	TCGA-E2-A1LG	SRGAP2	SNP	Silent	1	206579816	C	G	30	62
BRCA	TCGA-E2-A1LG	DNAH14	SNP	Missense_Mutation	1	225334860	G	C	45	56
BRCA	TCGA-E2-A1LG	EFCAB2	SNP	Silent	1	245133604	C	T	23	47
BRCA	TCGA-E2-A1LG	SH3BP5L	SNP	Missense_Mutation	1	249106488	C	T	30	93
BRCA	TCGA-E2-A1LG	STMN1	SNP	Silent	1	26212229	G	C	33	51
BRCA	TCGA-E2-A1LG	PUM1	SNP	Silent	1	31478856	G	A	45	66
BRCA	TCGA-E2-A1LG	NDUFS5	SNP	Missense_Mutation	1	39494490	C	G	31	65
BRCA	TCGA-E2-A1LG	ZMYND12	SNP	Missense_Mutation	1	42914274	C	G	32	65
BRCA	TCGA-E2-A1LG	FAM178A	SNP	Missense_Mutation	10	102676827	G	C	33	69
BRCA	TCGA-E2-A1LG	FBXO18	SNP	Missense_Mutation	10	5948419	C	G	30	82
BRCA	TCGA-E2-A1LG	SIRT1	SNP	Missense_Mutation	10	69676149	G	C	33	54
BRCA	TCGA-E2-A1LG	CEP164	SNP	Missense_Mutation	11	117267896	C	G	30	80
BRCA	TCGA-E2-A1LG	DSCAML1	SNP	Silent	11	117651335	G	A	40	53
BRCA	TCGA-E2-A1LG	CBL	SNP	Silent	11	119148506	G	A	45	59
BRCA	TCGA-E2-A1LG	CBL	SNP	Missense_Mutation	11	119155748	G	C	45	97
BRCA	TCGA-E2-A1LG	CBL	SNP	Missense_Mutation	11	119155954	G	C	37	97
BRCA	TCGA-E2-A1LG	ZNF202	SNP	Silent	11	123601456	C	T	32	73
BRCA	TCGA-E2-A1LG	MUC5B	SNP	Missense_Mutation	11	1256618	C	G	30	95
BRCA	TCGA-E2-A1LG	TNNI2	SNP	Silent	11	1862416	C	T	29	57
BRCA	TCGA-E2-A1LG	TRPM5	SNP	Missense_Mutation	11	2432657	C	T	30	72
BRCA	TCGA-E2-A1LG	PAMR1	SNP	Missense_Mutation	11	35463039	G	C	33	51
BRCA	TCGA-E2-A1LG	LRP4	SNP	Missense_Mutation	11	46897025	C	G	30	100
BRCA	TCGA-E2-A1LG	GLYATL2	SNP	Missense_Mutation	11	58604868	C	G	32	52
BRCA	TCGA-E2-A1LG	TUT1	SNP	Missense_Mutation	11	62343377	G	C	33	78
BRCA	TCGA-E2-A1LG	SYVN1	SNP	Silent	11	64898960	G	C	33	61
BRCA	TCGA-E2-A1LG	PCNXL3	SNP	Missense_Mutation	11	65389721	G	T	33	74
BRCA	TCGA-E2-A1LG	CCDC67	SNP	Missense_Mutation	11	93148236	G	C	33	78
BRCA	TCGA-E2-A1LG	CHPT1	SNP	Missense_Mutation	12	102117560	C	G	32	85
BRCA	TCGA-E2-A1LG	DENND5B	SNP	Missense_Mutation	12	31632879	C	T	32	84
BRCA	TCGA-E2-A1LG	C12orf5	SNP	Missense_Mutation	12	4446208	A	C	5	79
BRCA	TCGA-E2-A1LG	LMBR1L	SNP	Missense_Mutation	12	49500499	G	C	33	59
BRCA	TCGA-E2-A1LG	FAM186B	SNP	Missense_Mutation	12	49994319	G	C	33	50
BRCA	TCGA-E2-A1LG	BLOC1S1	SNP	Missense_Mutation	12	56112976	G	A	41	68
BRCA	TCGA-E2-A1LG	TSPAN8	SNP	Splice_Site	12	71523195	C	T	32	78
BRCA	TCGA-E2-A1LG	KDELC1	SNP	Missense_Mutation	13	103446142	C	T	29	100
BRCA	TCGA-E2-A1LG	COL4A2	SNP	Missense_Mutation	13	111117840	G	T	41	85
BRCA	TCGA-E2-A1LG	ZMYM2	SNP	Missense_Mutation	13	20579263	G	C	45	75
BRCA	TCGA-E2-A1LG	XPO4	SNP	Missense_Mutation	13	21436902	C	T	31	97
BRCA	TCGA-E2-A1LG	EFHA1	SNP	Splice_Site	13	22070300	C	G	32	82
BRCA	TCGA-E2-A1LG	GTF3A	SNP	Missense_Mutation	13	28001286	C	G	32	94
BRCA	TCGA-E2-A1LG	UGGT2	SNP	Silent	13	96529964	C	T	29	58
BRCA	TCGA-E2-A1LG	CTAGE5	SNP	Nonsense_Mutation	14	39796100	C	T	29	63
BRCA	TCGA-E2-A1LG	NIN	SNP	Missense_Mutation	14	51239789	G	C	33	92
BRCA	TCGA-E2-A1LG	SOCS4	SNP	Nonsense_Mutation	14	55510415	C	G	29	63
BRCA	TCGA-E2-A1LG	FNTB	SNP	Splice_site	14	65482433	G	C	33	92
BRCA	TCGA-E2-A1LG	UNC79	SNP	Missense_Mutation	14	94088627	C	T	23	80
BRCA	TCGA-E2-A1LG	LCMT2	SNP	Missense_Mutation	15	43622033	C	T	29	75
BRCA	TCGA-E2-A1LG	SORD	SNP	Missense_Mutation	15	45353269	T	A	50	60
BRCA	TCGA-E2-A1LG	UNC13C	SNP	Splice_site	15	54435237	G	T	35	84
BRCA	TCGA-E2-A1LG	ACAN	SNP	Missense_Mutation	15	89401865	G	A	33	73
BRCA	TCGA-E2-A1LG	CNGB1	SNP	Silent	16	57921825	G	T	41	41
BRCA	TCGA-E2-A1LG	KCTD19	SNP	Missense_Mutation	16	67338408	C	T	29	81
BRCA	TCGA-E2-A1LG	DNAAF1	SNP	Missense_Mutation	16	84199429	G	A	45	94
BRCA	TCGA-E2-A1LG	PLD6	SNP	Missense_Mutation	17	17106133	C	T	32	39
BRCA	TCGA-E2-A1LG	CDK12	SNP	Missense_Mutation	17	37667820	G	C	37	100
BRCA	TCGA-E2-A1LG	STAT5B	SNP	Missense_Mutation	17	40370196	G	C	33	100
BRCA	TCGA-E2-A1LG	C17orf53	SNP	Silent	17	42232258	G	A	33	65
BRCA	TCGA-E2-A1LG	RHBDF2	SNP	Missense_Mutation	17	74473024	G	A	37	72
BRCA	TCGA-E2-A1LG	TP53	DEL	In_Frame_Del	17	7577515	TGA	-	59	73
BRCA	TCGA-E2-A1LG	CANT1	SNP	Silent	17	76989659	C	A	29	48
BRCA	TCGA-E2-A1LG	COLEC12	SNP	Silent	18	331727	G	A	45	50
BRCA	TCGA-E2-A1LG	CILP2	SNP	Nonsense_Mutation	19	19654870	C	T	21	66
BRCA	TCGA-E2-A1LG	WTIP	SNP	Silent	19	34984225	G	A	41	80
BRCA	TCGA-E2-A1LG	RYR1	SNP	Silent	19	38948694	C	T	30	58
BRCA	TCGA-E2-A1LG	FIZ1	SNP	Missense_Mutation	19	56109162	G	A	45	65
BRCA	TCGA-E2-A1LG	U2AF2	SNP	Missense_Mutation	19	56171941	C	T	21	90
BRCA	TCGA-E2-A1LG	MAP4K4	SNP	Missense_Mutation	2	102448266	G	A	45	100
BRCA	TCGA-E2-A1LG	EDAR	SNP	Nonsense_Mutation	2	109546677	G	A	39	52
BRCA	TCGA-E2-A1LG	PMS1	SNP	Missense_Mutation	2	190728571	G	C	33	63
BRCA	TCGA-E2-A1LG	CCDC150	SNP	Silent	2	197521749	C	T	31	34
BRCA	TCGA-E2-A1LG	ZDBF2	SNP	Nonsense_Mutation	2	207169562	G	T	37	56
BRCA	TCGA-E2-A1LG	CRYGA	SNP	Missense_Mutation	2	209025769	C	T	32	66
BRCA	TCGA-E2-A1LG	DTNB	SNP	Silent	2	25611078	G	A	37	41
BRCA	TCGA-E2-A1LG	INPP4A	SNP	Missense_Mutation	2	99189336	G	C	33	59
BRCA	TCGA-E2-A1LG	DEFB132	SNP	Nonsense_Mutation	20	239786	G	T	41	67
BRCA	TCGA-E2-A1LG	ERGIC3	SNP	Silent	20	34130641	A	G	2	51
BRCA	TCGA-E2-A1LG	LAMA5	SNP	Silent	20	60905656	G	A	45	57
BRCA	TCGA-E2-A1LG	KRTAP10-8	SNP	Silent	21	46032257	C	T	28	73
BRCA	TCGA-E2-A1LG	DGCR6	SNP	Missense_Mutation	22	18893927	G	A	39	61
BRCA	TCGA-E2-A1LG	MYH9	SNP	Silent	22	36690231	C	T	32	70
BRCA	TCGA-E2-A1LG	CHRDL1	SNP	Splice_site	23	110035316	G	A	40	59
BRCA	TCGA-E2-A1LG	OPHN1	SNP	Silent	23	67431962	G	C	45	56
BRCA	TCGA-E2-A1LG	KIF4A	SNP	Nonsense_Mutation	23	69606486	G	T	45	86
BRCA	TCGA-E2-A1LG	CD200R1L	SNP	Silent	3	112538665	G	A	33	54
BRCA	TCGA-E2-A1LG	B4GALT4	SNP	Silent	3	118945872	G	C	45	50
BRCA	TCGA-E2-A1LG	SOX14	SNP	Silent	3	137484310	C	T	25	54
BRCA	TCGA-E2-A1LG	USP13	SNP	Nonsense_Mutation	3	179472637	C	A	29	84
BRCA	TCGA-E2-A1LG	ZNF860	SNP	Missense_Mutation	3	32032288	G	A	37	53
BRCA	TCGA-E2-A1LG	SCN10A	SNP	Missense_Mutation	3	38805068	C	G	32	76
BRCA	TCGA-E2-A1LG	ZNF167	SNP	Missense_Mutation	3	44611611	G	C	45	53
BRCA	TCGA-E2-A1LG	XCR1	SNP	Missense_Mutation	3	46063195	C	T	25	50
BRCA	TCGA-E2-A1LG	PBRM1	SNP	Missense_Mutation	3	52584826	C	T	29	70
BRCA	TCGA-E2-A1LG	OR5H6	SNP	Missense_Mutation	3	97983636	C	T	32	40
BRCA	TCGA-E2-A1LG	PCDH10	SNP	Missense_Mutation	4	134072178	C	T	26	56
BRCA	TCGA-E2-A1LG	ENPP6	SNP	Silent	4	185038159	G	A	45	52
BRCA	TCGA-E2-A1LG	BMP2K	INS	In_Frame_Ins	4	79792136	-	CAG	2	44
BRCA	TCGA-E2-A1LG	FNIP1	SNP	Missense_Mutation	5	130791627	T	G	56	53
BRCA	TCGA-E2-A1LG	KIF3A	SNP	Missense_Mutation	5	132034940	C	G	32	60
BRCA	TCGA-E2-A1LG	DNAH5	SNP	Missense_Mutation	5	13762836	G	C	33	68
BRCA	TCGA-E2-A1LG	TCOF1	SNP	Missense_Mutation	5	149775971	C	T	22	58
BRCA	TCGA-E2-A1LG	RPS14	SNP	Silent	5	149825182	G	A	37	46
BRCA	TCGA-E2-A1LG	SLC36A2	SNP	Silent	5	150696504	G	A	45	67
BRCA	TCGA-E2-A1LG	CDHR2	SNP	Silent	5	176002162	C	G	29	54
BRCA	TCGA-E2-A1LG	ERAP2	SNP	Missense_Mutation	5	96215756	C	G	29	56
BRCA	TCGA-E2-A1LG	THEMIS	SNP	Missense_Mutation	6	128221997	G	C	33	66
BRCA	TCGA-E2-A1LG	TBP	SNP	Silent	6	170871091	G	A	34	60
BRCA	TCGA-E2-A1LG	HIST1H2AJ	SNP	Nonsense_Mutation	6	27782245	C	A	29	96
BRCA	TCGA-E2-A1LG	MCM3	SNP	Silent	6	52146918	C	T	32	79
BRCA	TCGA-E2-A1LG	BACH2	SNP	Splice_site	6	90661581	C	A	18	98
BRCA	TCGA-E2-A1LG	GSTK1	SNP	Missense_Mutation	7	142962324	C	T	23	49
BRCA	TCGA-E2-A1LG	ZNF425	SNP	Missense_Mutation	7	148802280	C	G	32	59
BRCA	TCGA-E2-A1LG	MLL3	DEL	Frame_Shift_Del	7	151917645	TG	-	55	56
BRCA	TCGA-E2-A1LG	MLL3	DEL	In_Frame_Del	7	151917648	TTGGATGTCTGGAGGGGTCTGAAG	-	52	50
BRCA	TCGA-E2-A1LG	MLL3	SNP	Nonsense_Mutation	7	151921673	C	T	21	98
BRCA	TCGA-E2-A1LG	TBX20	SNP	Missense_Mutation	7	35284610	G	T	33	100
BRCA	TCGA-E2-A1LG	ARPC1B	SNP	Missense_Mutation	7	98991734	G	A	41	99
BRCA	TCGA-E2-A1LG	RGS22	SNP	Missense_Mutation	8	101083735	C	A	30	84
BRCA	TCGA-E2-A1LG	ABRA	SNP	Silent	8	107773358	G	C	45	47
BRCA	TCGA-E2-A1LG	SPATC1	SNP	Silent	8	145101812	C	T	29	62
BRCA	TCGA-E2-A1LG	MYOM2	SNP	Missense_Mutation	8	2088660	C	T	29	99
BRCA	TCGA-E2-A1LG	NUGGC	SNP	Silent	8	27887897	G	A	45	51
BRCA	TCGA-E2-A1LG	CYLC2	SNP	Silent	9	105767684	G	C	37	49
BRCA	TCGA-E2-A1LG	AKNA	SNP	Missense_Mutation	9	117108251	C	G	29	58
BRCA	TCGA-E2-A1LG	FAM129B	SNP	Missense_Mutation	9	130286102	C	T	25	47
BRCA	TCGA-E2-A1LG	LAMC3	SNP	Missense_Mutation	9	133924412	G	A	37	58
BRCA	TCGA-E2-A1LG	ADAMTSL1	SNP	Silent	9	18639298	C	G	29	60
BRCA	TCGA-E2-A1LG	PLIN2	SNP	Missense_Mutation	9	19116288	C	G	32	49
BRCA	TCGA-E2-A1LG	RGP1	SNP	Missense_Mutation	9	35749738	G	C	45	59
BRCA	TCGA-E2-A1LG	RGP1	SNP	Silent	9	35751661	G	A	41	51
BRCA	TCGA-E2-A1LG	ANXA1	SNP	Missense_Mutation	9	75773624	C	T	29	57
BRCA	TCGA-E2-A1LG	PTPRD	SNP	Silent	9	8518119	G	A	41	50
BRCA	TCGA-E2-A1LH	AHCYL1	SNP	Missense_Mutation	1	110559298	G	T	41	63
BRCA	TCGA-E2-A1LH	CD84	SNP	Nonsense_Mutation	1	160523827	G	T	48	52
BRCA	TCGA-E2-A1LH	ITLN2	SNP	Silent	1	160922453	A	G	15	46
BRCA	TCGA-E2-A1LH	DUSP27	SNP	Missense_Mutation	1	167095074	G	C	44	100
BRCA	TCGA-E2-A1LH	LYST	SNP	Missense_Mutation	1	235907399	C	G	32	61
BRCA	TCGA-E2-A1LH	RGS7	SNP	Missense_Mutation	1	240969478	C	T	19	78
BRCA	TCGA-E2-A1LH	OR2L8	SNP	Missense_Mutation	1	248113016	C	A	22	84
BRCA	TCGA-E2-A1LH	GPATCH3	SNP	Missense_Mutation	1	27226625	G	C	34	70
BRCA	TCGA-E2-A1LH	SZT2	SNP	Missense_Mutation	1	43868911	C	T	31	98
BRCA	TCGA-E2-A1LH	TAL1	SNP	Missense_Mutation	1	47685653	G	C	44	79
BRCA	TCGA-E2-A1LH	USP24	SNP	Missense_Mutation	1	55555340	C	T	20	83
BRCA	TCGA-E2-A1LH	GBP4	SNP	Splice_Site	1	89656943	C	T	19	60
BRCA	TCGA-E2-A1LH	LRRC18	SNP	Missense_Mutation	10	50122049	T	A	58	80
BRCA	TCGA-E2-A1LH	ITIH5	SNP	Silent	10	7658059	A	T	9	51
BRCA	TCGA-E2-A1LH	AVPI1	SNP	Missense_Mutation	10	99437633	C	G	32	81
BRCA	TCGA-E2-A1LH	DYNC2H1	SNP	Missense_Mutation	11	103106473	C	A	32	74
BRCA	TCGA-E2-A1LH	ALG9	SNP	Splice_site	11	111680367	C	G	24	91
BRCA	TCGA-E2-A1LH	C11orf63	SNP	Missense_Mutation	11	122774895	G	A	47	48
BRCA	TCGA-E2-A1LH	OR10G4	SNP	Nonsense_Mutation	11	123886801	C	T	21	51
BRCA	TCGA-E2-A1LH	EI24	SNP	Missense_Mutation	11	125447449	T	C	57	76
BRCA	TCGA-E2-A1LH	FOXRED1	SNP	Missense_Mutation	11	126147394	C	G	22	61
BRCA	TCGA-E2-A1LH	SLC5A12	SNP	Missense_Mutation	11	26702758	C	A	30	74
BRCA	TCGA-E2-A1LH	SLC22A10	SNP	Missense_Mutation	11	63069806	C	G	25	54
BRCA	TCGA-E2-A1LH	ZNF215	SNP	Silent	11	6977210	T	C	59	52
BRCA	TCGA-E2-A1LH	PAAF1	DEL	Frame_Shift_Del	11	73627677	ATTT	-	8	59
BRCA	TCGA-E2-A1LH	UCP2	SNP	Missense_Mutation	11	73687912	T	A	57	91
BRCA	TCGA-E2-A1LH	XRRA1	SNP	Splice_Site	11	74574068	T	C	55	71
BRCA	TCGA-E2-A1LH	CKAP4	SNP	Missense_Mutation	12	106633464	C	G	31	52
BRCA	TCGA-E2-A1LH	TRAFD1	SNP	Splice_site	12	112587555	G	T	41	82
BRCA	TCGA-E2-A1LH	ZCCHC8	SNP	Missense_Mutation	12	122958130	C	T	32	85
BRCA	TCGA-E2-A1LH	EP400NL	SNP	Missense_Mutation	12	132589046	G	C	41	85
BRCA	TCGA-E2-A1LH	ARNTL2	SNP	Splice_Site	12	27521193	A	C	15	69
BRCA	TCGA-E2-A1LH	IFNG	SNP	Missense_Mutation	12	68549246	G	A	40	64
BRCA	TCGA-E2-A1LH	ZDHHC17	SNP	Missense_Mutation	12	77191265	C	G	19	86
BRCA	TCGA-E2-A1LH	AMDHD1	DEL	Frame_Shift_Del	12	96359545	TTGC	-	52	55
BRCA	TCGA-E2-A1LH	IKBIP	SNP	Missense_Mutation	12	99007970	G	A	40	50
BRCA	TCGA-E2-A1LH	CARS2	DEL	In_Frame_Del	13	111293891	GCT	-	38	51
BRCA	TCGA-E2-A1LH	SACS	SNP	Silent	13	23912087	G	C	47	43
BRCA	TCGA-E2-A1LH	INTS6	SNP	Missense_Mutation	13	51948545	C	G	17	98
BRCA	TCGA-E2-A1LH	DYNC1H1	SNP	Missense_Mutation	14	102496209	G	T	33	62
BRCA	TCGA-E2-A1LH	SNX6	SNP	Missense_Mutation	14	35032351	C	A	26	89
BRCA	TCGA-E2-A1LH	TMEM63C	SNP	Missense_Mutation	14	77697973	C	G	32	62
BRCA	TCGA-E2-A1LH	STARD9	DEL	In_Frame_Del	15	42982040	TGACTC	-	59	47
BRCA	TCGA-E2-A1LH	MAP1A	DEL	Frame_Shift_Del	15	43813754	CCTCAGGGGGCTT	-	18	84
BRCA	TCGA-E2-A1LH	SLC12A1	SNP	Missense_Mutation	15	48551430	G	A	45	65
BRCA	TCGA-E2-A1LH	SLC27A2	SNP	Missense_Mutation	15	50515175	G	A	40	60
BRCA	TCGA-E2-A1LH	ZNF609	SNP	Missense_Mutation	15	64970559	C	G	30	84
BRCA	TCGA-E2-A1LH	HEXA	SNP	Missense_Mutation	15	72641433	C	T	29	78
BRCA	TCGA-E2-A1LH	MYH11	SNP	Silent	16	15797866	T	C	62	57
BRCA	TCGA-E2-A1LH	CDH8	SNP	Missense_Mutation	16	61689466	A	T	10	88
BRCA	TCGA-E2-A1LH	TERF2	SNP	Missense_Mutation	16	69401045	C	G	32	61
BRCA	TCGA-E2-A1LH	NFAT5	SNP	Missense_Mutation	16	69681063	C	T	26	85
BRCA	TCGA-E2-A1LH	SF3B3	SNP	Silent	16	70595601	G	A	48	62
BRCA	TCGA-E2-A1LH	CPD	SNP	Missense_Mutation	17	28766018	G	C	33	54
BRCA	TCGA-E2-A1LH	PLCD3	SNP	Missense_Mutation	17	43195728	A	T	11	74
BRCA	TCGA-E2-A1LH	EPX	SNP	Missense_Mutation	17	56276953	G	C	41	48
BRCA	TCGA-E2-A1LH	TP53	SNP	Missense_Mutation	17	7578535	T	G	56	76
BRCA	TCGA-E2-A1LH	ALPK2	SNP	Missense_Mutation	18	56247679	T	G	60	58
BRCA	TCGA-E2-A1LH	TWSG1	SNP	Missense_Mutation	18	9396385	G	C	33	97
BRCA	TCGA-E2-A1LH	UNC13A	SNP	Silent	19	17785507	C	T	23	22
BRCA	TCGA-E2-A1LH	CILP2	INS	Frame_Shift_Ins	19	19655187	-	G	18	59
BRCA	TCGA-E2-A1LH	ZNF43	SNP	Missense_Mutation	19	21990455	A	T	6	54
BRCA	TCGA-E2-A1LH	PSENEN	SNP	Missense_Mutation	19	36237374	G	A	37	60
BRCA	TCGA-E2-A1LH	PRODH2	SNP	Silent	19	36297349	A	G	8	40
BRCA	TCGA-E2-A1LH	ZNF180	SNP	Missense_Mutation	19	44982147	A	G	2	54
BRCA	TCGA-E2-A1LH	KLK13	SNP	Missense_Mutation	19	51561881	C	T	29	55
BRCA	TCGA-E2-A1LH	ACER1	SNP	Missense_Mutation	19	6333478	A	T	15	70
BRCA	TCGA-E2-A1LH	MBD3L3	SNP	Missense_Mutation	19	7056372	G	C	48	55
BRCA	TCGA-E2-A1LH	STXBP2	SNP	Missense_Mutation	19	7707892	G	C	33	60
BRCA	TCGA-E2-A1LH	DDX18	SNP	Missense_Mutation	2	118582195	G	C	33	99
BRCA	TCGA-E2-A1LH	TTN	SNP	Silent	2	179477137	G	C	45	49
BRCA	TCGA-E2-A1LH	NIF3L1	SNP	Missense_Mutation	2	201764124	C	T	31	22
BRCA	TCGA-E2-A1LH	SPHKAP	SNP	Missense_Mutation	2	228846465	T	A	54	82
BRCA	TCGA-E2-A1LH	SP110	SNP	Silent	2	231079807	C	T	29	72
BRCA	TCGA-E2-A1LH	UGT1A5	SNP	Silent	2	234622270	C	A	29	50
BRCA	TCGA-E2-A1LH	SLC4A5	SNP	Missense_Mutation	2	74466568	T	G	56	75
BRCA	TCGA-E2-A1LH	CST7	SNP	Missense_Mutation	20	24937952	G	C	48	49
BRCA	TCGA-E2-A1LH	RBM12	SNP	Missense_Mutation	20	34240553	C	T	24	97
BRCA	TCGA-E2-A1LH	RIMS4	SNP	Missense_Mutation	20	43386365	C	G	30	100
BRCA	TCGA-E2-A1LH	LAMA5	SNP	Silent	20	60909006	G	A	38	38
BRCA	TCGA-E2-A1LH	DSCAM	SNP	Silent	21	41459120	A	C	7	51
BRCA	TCGA-E2-A1LH	MYO18B	SNP	Missense_Mutation	22	26272182	C	G	30	55
BRCA	TCGA-E2-A1LH	GGA1	SNP	Silent	22	38016265	G	A	39	35
BRCA	TCGA-E2-A1LH	PACSIN2	SNP	Missense_Mutation	22	43275089	C	G	32	58
BRCA	TCGA-E2-A1LH	TIMM8A	SNP	Missense_Mutation	23	100601591	C	T	17	97
BRCA	TCGA-E2-A1LH	SLC9A6	SNP	Missense_Mutation	23	135077034	C	A	30	92
BRCA	TCGA-E2-A1LH	MAGEA12	SNP	Missense_Mutation	23	151900530	C	G	32	55
BRCA	TCGA-E2-A1LH	CACNA1F	SNP	Silent	23	49063555	G	C	45	58
BRCA	TCGA-E2-A1LH	PHKA1	SNP	Missense_Mutation	23	71855080	G	A	35	68
BRCA	TCGA-E2-A1LH	HDX	SNP	Missense_Mutation	23	83724316	G	C	45	82
BRCA	TCGA-E2-A1LH	FANCD2	SNP	Missense_Mutation	3	10128882	C	G	32	84
BRCA	TCGA-E2-A1LH	WDR52	SNP	Missense_Mutation	3	113119482	G	T	43	72
BRCA	TCGA-E2-A1LH	POGLUT1	SNP	Missense_Mutation	3	119209519	C	G	26	79
BRCA	TCGA-E2-A1LH	COLQ	SNP	Silent	3	15515753	C	G	21	57
BRCA	TCGA-E2-A1LH	SERPINI2	SNP	Silent	3	167184946	A	G	8	80
BRCA	TCGA-E2-A1LH	SLC7A14	SNP	Silent	3	170201192	C	T	23	0
BRCA	TCGA-E2-A1LH	HRG	SNP	Missense_Mutation	3	186389561	G	C	37	65
BRCA	TCGA-E2-A1LH	ATP13A4	SNP	Missense_Mutation	3	193156267	A	C	12	92
BRCA	TCGA-E2-A1LH	SCN11A	SNP	Missense_Mutation	3	38951681	T	A	49	43
BRCA	TCGA-E2-A1LH	ULK4	SNP	Missense_Mutation	3	41757046	A	C	11	60
BRCA	TCGA-E2-A1LH	PTPN23	SNP	Missense_Mutation	3	47452898	C	G	17	75
BRCA	TCGA-E2-A1LH	OR5K1	SNP	Missense_Mutation	3	98189042	G	C	36	63
BRCA	TCGA-E2-A1LH	NFKB1	SNP	Missense_Mutation	4	103459076	C	G	32	93
BRCA	TCGA-E2-A1LH	PCDH10	SNP	Missense_Mutation	4	134073838	C	G	20	95
BRCA	TCGA-E2-A1LH	GRAMD3	SNP	Missense_Mutation	5	125759303	C	G	20	80
BRCA	TCGA-E2-A1LH	PCDHAC2	DEL	Frame_Shift_Del	5	140348549	GCTACACT	-	38	43
BRCA	TCGA-E2-A1LH	SPINK5	SNP	Missense_Mutation	5	147469120	G	C	45	67
BRCA	TCGA-E2-A1LH	RANBP3L	SNP	Missense_Mutation	5	36268305	A	T	4	51
BRCA	TCGA-E2-A1LH	MAST4	SNP	Splice_Site	5	66432390	G	A	33	100
BRCA	TCGA-E2-A1LH	CCDC125	SNP	Silent	5	68595848	T	G	55	53
BRCA	TCGA-E2-A1LH	NR2F1	SNP	Missense_Mutation	5	92923685	G	A	39	99
BRCA	TCGA-E2-A1LH	SLC18B1	SNP	Missense_Mutation	6	133100532	C	G	24	49
BRCA	TCGA-E2-A1LH	PCMT1	SNP	Missense_Mutation	6	150070927	G	A	41	69
BRCA	TCGA-E2-A1LH	C6orf123	SNP	Missense_Mutation	6	168191674	G	C	35	50
BRCA	TCGA-E2-A1LH	ZKSCAN4	SNP	Missense_Mutation	6	28219418	C	A	23	58
BRCA	TCGA-E2-A1LH	FGD2	INS	Frame_Shift_Ins	6	36995284	-	C	42	73
BRCA	TCGA-E2-A1LH	MEA1	SNP	Missense_Mutation	6	42980860	C	G	31	72
BRCA	TCGA-E2-A1LH	KLHDC3	SNP	Missense_Mutation	6	42986864	G	C	45	68
BRCA	TCGA-E2-A1LH	TTBK1	SNP	Missense_Mutation	6	43223320	C	A	24	74
BRCA	TCGA-E2-A1LH	GPR111	SNP	Missense_Mutation	6	47646792	G	A	47	55
BRCA	TCGA-E2-A1LH	DOPEY1	SNP	Silent	6	83841993	T	G	56	55
BRCA	TCGA-E2-A1LH	KIAA1009	SNP	Missense_Mutation	6	84862461	T	G	56	69
BRCA	TCGA-E2-A1LH	MUC12	DEL	Frame_Shift_Del	7	100656338	GTGAACAA	-	48	58
BRCA	TCGA-E2-A1LH	MLL5	SNP	Missense_Mutation	7	104752795	A	G	14	62
BRCA	TCGA-E2-A1LH	AKR1D1	SNP	Missense_Mutation	7	137776547	C	T	23	57
BRCA	TCGA-E2-A1LH	ETV1	SNP	Silent	7	13949273	G	T	41	50
BRCA	TCGA-E2-A1LH	SLC4A2	SNP	Silent	7	150773264	G	A	33	63
BRCA	TCGA-E2-A1LH	XRCC2	SNP	Missense_Mutation	7	152346029	C	T	32	55
BRCA	TCGA-E2-A1LH	DNAH11	SNP	Missense_Mutation	7	21639618	C	G	24	55
BRCA	TCGA-E2-A1LH	BBS9	SNP	Missense_Mutation	7	33573686	C	G	21	61
BRCA	TCGA-E2-A1LH	KDELR2	SNP	Splice_Site	7	6509386	C	G	24	100
BRCA	TCGA-E2-A1LH	NSUN5	SNP	Missense_Mutation	7	72718027	G	C	39	47
BRCA	TCGA-E2-A1LH	UBR5	SNP	Missense_Mutation	8	103282400	C	A	32	97
BRCA	TCGA-E2-A1LH	EIF3E	SNP	Silent	8	109228677	A	G	5	64
BRCA	TCGA-E2-A1LH	FAM49B	SNP	Silent	8	130867881	G	A	45	59
BRCA	TCGA-E2-A1LH	LZTS1	SNP	Missense_Mutation	8	20110933	G	A	38	57
BRCA	TCGA-E2-A1LH	MYOM2	SNP	Missense_Mutation	8	2041867	A	T	12	51
BRCA	TCGA-E2-A1LH	RAB11FIP1	SNP	Missense_Mutation	8	37730075	C	G	32	46
BRCA	TCGA-E2-A1LH	PLAT	SNP	Missense_Mutation	8	42045512	G	T	45	63
BRCA	TCGA-E2-A1LH	RB1CC1	SNP	Missense_Mutation	8	53586778	C	T	32	84
BRCA	TCGA-E2-A1LH	POP1	SNP	Silent	8	99158821	T	A	62	47
BRCA	TCGA-E2-A1LH	FREM1	SNP	Missense_Mutation	9	14859447	A	G	12	54
BRCA	TCGA-E2-A1LH	TLN1	SNP	Missense_Mutation	9	35707382	G	A	35	88
BRCA	TCGA-E2-A1LH	PCSK5	SNP	Missense_Mutation	9	78799667	G	C	43	95
BRCA	TCGA-E2-A1LI	CREB3L4	SNP	Missense_Mutation	1	153945720	G	C	41	70
BRCA	TCGA-E2-A1LI	IGFN1	SNP	Missense_Mutation	1	201182360	C	A	30	54
BRCA	TCGA-E2-A1LI	USH2A	SNP	Missense_Mutation	1	215932045	C	T	29	56
BRCA	TCGA-E2-A1LI	OR11L1	SNP	Missense_Mutation	1	248005024	T	G	49	88
BRCA	TCGA-E2-A1LI	EIF2C1	SNP	Missense_Mutation	1	36358824	C	G	30	88
BRCA	TCGA-E2-A1LI	AKR1C2	SNP	Missense_Mutation	10	5034041	C	T	31	60
BRCA	TCGA-E2-A1LI	RPL6	SNP	Silent	12	112846113	G	C	37	51
BRCA	TCGA-E2-A1LI	MRPS31	SNP	Missense_Mutation	13	41333214	C	G	26	72
BRCA	TCGA-E2-A1LI	KIAA0317	SNP	Missense_Mutation	14	75136706	C	A	28	100
BRCA	TCGA-E2-A1LI	TUBGCP5	SNP	Silent	15	22855186	G	A	48	61
BRCA	TCGA-E2-A1LI	NARG2	SNP	Missense_Mutation	15	60720860	G	C	33	63
BRCA	TCGA-E2-A1LI	LILRA5	SNP	Missense_Mutation	19	54823313	C	T	19	34
BRCA	TCGA-E2-A1LI	MSTN	SNP	Silent	2	190925034	T	A	63	54
BRCA	TCGA-E2-A1LI	OTOF	SNP	Missense_Mutation	2	26698897	G	A	38	54
BRCA	TCGA-E2-A1LI	FAHD2A	SNP	Missense_Mutation	2	96078498	C	G	30	85
BRCA	TCGA-E2-A1LI	TTC3	SNP	Missense_Mutation	21	38524309	C	A	22	80
BRCA	TCGA-E2-A1LI	GPRASP1	SNP	Missense_Mutation	23	101911705	C	G	26	47
BRCA	TCGA-E2-A1LI	WDR52	SNP	Missense_Mutation	3	113060733	T	C	52	45
BRCA	TCGA-E2-A1LI	SYNPR	SNP	Missense_Mutation	3	63466619	G	C	46	93
BRCA	TCGA-E2-A1LI	FREM3	SNP	Silent	4	144614306	G	A	40	48
BRCA	TCGA-E2-A1LI	FAM13A	SNP	Missense_Mutation	4	89708952	C	A	27	74
BRCA	TCGA-E2-A1LI	HIST1H2AK	SNP	Missense_Mutation	6	27806084	G	C	37	63
BRCA	TCGA-E2-A1LI	ATP5J2-PTCD1	SNP	Silent	7	99021452	T	C	56	50
BRCA	TCGA-E2-A1LI	CYHR1	SNP	Missense_Mutation	8	145675924	G	C	40	38
BRCA	TCGA-E2-A1LI	LRRC8A	SNP	Missense_Mutation	9	131678540	G	C	37	93
BRCA	TCGA-E2-A1LK	CHI3L1	INS	Frame_Shift_Ins	1	203154343	-	C	34	71
BRCA	TCGA-E2-A1LK	ABCB10	SNP	Missense_Mutation	1	229676385	C	G	32	100
BRCA	TCGA-E2-A1LK	ABCB10	SNP	Missense_Mutation	1	229678083	C	G	29	65
BRCA	TCGA-E2-A1LK	DIP2C	SNP	Silent	10	395377	C	T	27	29
BRCA	TCGA-E2-A1LK	FAM208B	SNP	Missense_Mutation	10	5788704	T	C	55	52
BRCA	TCGA-E2-A1LK	LARP4B	SNP	Nonsense_Mutation	10	875659	G	A	37	58
BRCA	TCGA-E2-A1LK	SLC43A1	SNP	Silent	11	57252590	G	A	38	47
BRCA	TCGA-E2-A1LK	PGA3	SNP	Missense_Mutation	11	60975059	C	T	17	55
BRCA	TCGA-E2-A1LK	DGAT2	SNP	Missense_Mutation	11	75501262	A	G	8	85
BRCA	TCGA-E2-A1LK	AQP11	SNP	Missense_Mutation	11	77301600	G	A	37	56
BRCA	TCGA-E2-A1LK	CAPRIN2	SNP	Silent	12	30872133	C	A	19	48
BRCA	TCGA-E2-A1LK	SAMD4A	SNP	Missense_Mutation	14	55255646	G	A	39	94
BRCA	TCGA-E2-A1LK	USP8	SNP	Missense_Mutation	15	50741617	T	G	63	62
BRCA	TCGA-E2-A1LK	GTF3C1	SNP	Missense_Mutation	16	27497439	T	G	57	78
BRCA	TCGA-E2-A1LK	CCDC144NL	SNP	Missense_Mutation	17	20799309	G	A	38	42
BRCA	TCGA-E2-A1LK	TMEM101	SNP	Silent	17	42090413	G	A	39	45
BRCA	TCGA-E2-A1LK	UBTF	SNP	Missense_Mutation	17	42290592	C	T	31	71
BRCA	TCGA-E2-A1LK	ALOX15	SNP	Missense_Mutation	17	4535496	C	T	27	55
BRCA	TCGA-E2-A1LK	RPS6KB1	SNP	Splice_site	17	57987923	G	A	43	91
BRCA	TCGA-E2-A1LK	ZNF69	SNP	Missense_Mutation	19	12016691	G	C	46	53
BRCA	TCGA-E2-A1LK	NCAN	SNP	Missense_Mutation	19	19359641	G	A	37	57
BRCA	TCGA-E2-A1LK	EDAR	SNP	Silent	2	109547441	C	T	27	47
BRCA	TCGA-E2-A1LK	CNTNAP5	SNP	Silent	2	125405531	G	A	38	33
BRCA	TCGA-E2-A1LK	TTN	SNP	Missense_Mutation	2	179581989	T	G	64	71
BRCA	TCGA-E2-A1LK	DZANK1	SNP	Missense_Mutation	20	18414355	C	T	17	62
BRCA	TCGA-E2-A1LK	MMP9	SNP	Silent	20	44637580	G	A	34	52
BRCA	TCGA-E2-A1LK	PRDM15	SNP	Silent	21	43256225	G	A	40	49
BRCA	TCGA-E2-A1LK	CDC42EP1	SNP	Silent	22	37964206	C	T	23	40
BRCA	TCGA-E2-A1LK	EFCAB6	SNP	Silent	22	44004466	G	A	39	28
BRCA	TCGA-E2-A1LK	GLUD2	SNP	Missense_Mutation	23	120181770	G	A	38	63
BRCA	TCGA-E2-A1LK	MTCP1NB	SNP	Silent	23	154292281	C	T	19	50
BRCA	TCGA-E2-A1LK	CXorf38	SNP	Silent	23	40506283	G	T	39	42
BRCA	TCGA-E2-A1LK	KDM6A	DEL	Splice_site	23	44894229	AAGT	-	1	69
BRCA	TCGA-E2-A1LK	HDAC6	SNP	Silent	23	48675747	T	A	55	57
BRCA	TCGA-E2-A1LK	GRK7	SNP	Missense_Mutation	3	141499486	T	C	56	70
BRCA	TCGA-E2-A1LK	XPC	SNP	Silent	3	14190419	C	T	30	50
BRCA	TCGA-E2-A1LK	MUC4	SNP	Missense_Mutation	3	195515134	G	T	35	58
BRCA	TCGA-E2-A1LK	UBA7	SNP	Missense_Mutation	3	49845239	C	T	27	78
BRCA	TCGA-E2-A1LK	CACNA1D	SNP	Missense_Mutation	3	53804500	G	A	37	100
BRCA	TCGA-E2-A1LK	GRM7	SNP	Missense_Mutation	3	7188164	C	T	19	100
BRCA	TCGA-E2-A1LK	GABRA4	SNP	Missense_Mutation	4	46967096	T	G	49	88
BRCA	TCGA-E2-A1LK	EPHA5	SNP	Silent	4	66286192	G	T	45	55
BRCA	TCGA-E2-A1LK	SERAC1	DEL	Splice_site	6	158535820	CC	-	18	100
BRCA	TCGA-E2-A1LK	C6orf70	SNP	Missense_Mutation	6	170159085	G	A	40	40
BRCA	TCGA-E2-A1LK	PLEC	SNP	Silent	8	144995814	C	T	23	23
BRCA	TCGA-E2-A1LK	XKR4	SNP	Missense_Mutation	8	56435983	G	A	38	86
BRCA	TCGA-E2-A1LL	LCE2B	SNP	Missense_Mutation	1	152659414	G	T	46	54
BRCA	TCGA-E2-A1LL	HMGB4	SNP	Silent	1	34329930	G	A	39	28
BRCA	TCGA-E2-A1LL	CPXM2	SNP	Missense_Mutation	10	125651030	C	T	27	50
BRCA	TCGA-E2-A1LL	METTL10	SNP	Missense_Mutation	10	126453973	C	G	29	67
BRCA	TCGA-E2-A1LL	FANK1	SNP	Missense_Mutation	10	127585218	C	A	26	65
BRCA	TCGA-E2-A1LL	C10orf91	SNP	Missense_Mutation	10	134261527	G	A	48	47
BRCA	TCGA-E2-A1LL	PRKCQ	SNP	Silent	10	6553110	G	A	35	54
BRCA	TCGA-E2-A1LL	UNC5B	SNP	Splice_Site	10	73046627	G	T	44	100
BRCA	TCGA-E2-A1LL	MMRN2	SNP	Missense_Mutation	10	88704043	T	A	50	49
BRCA	TCGA-E2-A1LL	PTEN	DEL	Frame_Shift_Del	10	89720826	AC	-	10	89
BRCA	TCGA-E2-A1LL	INPPL1	SNP	Missense_Mutation	11	71943304	G	A	40	96
BRCA	TCGA-E2-A1LL	IAPP	SNP	Splice_site	12	21531360	G	T	33	61
BRCA	TCGA-E2-A1LL	BRF1	SNP	Missense_Mutation	14	105766846	C	A	18	87
BRCA	TCGA-E2-A1LL	DLGAP5	SNP	Missense_Mutation	14	55621420	T	C	60	51
BRCA	TCGA-E2-A1LL	SPTB	SNP	Missense_Mutation	14	65239994	C	G	32	98
BRCA	TCGA-E2-A1LL	TRPM1	SNP	Missense_Mutation	15	31294084	T	C	52	55
BRCA	TCGA-E2-A1LL	PEAK1	SNP	Missense_Mutation	15	77474196	T	A	56	79
BRCA	TCGA-E2-A1LL	GOLGA6L10	SNP	Missense_Mutation	15	82635170	C	T	23	51
BRCA	TCGA-E2-A1LL	MGAT5B	SNP	Nonsense_Mutation	17	74902194	G	A	47	98
BRCA	TCGA-E2-A1LL	RPL26	SNP	Missense_Mutation	17	8280943	C	T	27	92
BRCA	TCGA-E2-A1LL	RYR1	SNP	Silent	19	38959725	C	A	30	60
BRCA	TCGA-E2-A1LL	MUC16	SNP	Silent	19	9069296	G	A	40	50
BRCA	TCGA-E2-A1LL	TTN	SNP	Silent	2	179477095	A	G	3	57
BRCA	TCGA-E2-A1LL	NRP2	SNP	Splice_site	2	206630294	G	T	43	88
BRCA	TCGA-E2-A1LL	XRCC5	SNP	Silent	2	217055015	G	A	33	60
BRCA	TCGA-E2-A1LL	CYP27A1	SNP	Missense_Mutation	2	219679713	A	G	4	51
BRCA	TCGA-E2-A1LL	SPHKAP	SNP	Missense_Mutation	2	228883047	C	G	24	44
BRCA	TCGA-E2-A1LL	LRRFIP1	SNP	Missense_Mutation	2	238643948	G	A	37	58
BRCA	TCGA-E2-A1LL	EFR3B	SNP	Missense_Mutation	2	25366711	C	G	22	96
BRCA	TCGA-E2-A1LL	SNX17	SNP	Missense_Mutation	2	27598788	T	A	49	89
BRCA	TCGA-E2-A1LL	HK2	SNP	Missense_Mutation	2	75099526	C	T	21	55
BRCA	TCGA-E2-A1LL	SUN5	SNP	Silent	20	31572971	C	T	24	49
BRCA	TCGA-E2-A1LL	CNKSR2	SNP	Missense_Mutation	23	21666975	G	C	33	73
BRCA	TCGA-E2-A1LL	ITM2A	SNP	Missense_Mutation	23	78618485	C	A	20	57
BRCA	TCGA-E2-A1LL	PLOD2	SNP	Silent	3	145809641	C	T	24	60
BRCA	TCGA-E2-A1LL	MCF2L2	SNP	Splice_site	3	183013089	C	G	23	49
BRCA	TCGA-E2-A1LL	FAM208A	SNP	Missense_Mutation	3	56675495	T	C	62	78
BRCA	TCGA-E2-A1LL	BOD1L1	SNP	Missense_Mutation	4	13606148	T	A	60	52
BRCA	TCGA-E2-A1LL	NAA11	SNP	Silent	4	80246366	T	C	55	41
BRCA	TCGA-E2-A1LL	NPM1	SNP	Silent	5	170827202	G	A	38	45
BRCA	TCGA-E2-A1LL	MXD3	SNP	Missense_Mutation	5	176734438	G	T	44	65
BRCA	TCGA-E2-A1LL	LRRC14B	SNP	Silent	5	195276	C	T	19	44
BRCA	TCGA-E2-A1LL	PIK3R1	DEL	In_Frame_Del	5	67591118	ATCCAGCTGAGAAAGACGAGA	-	16	90
BRCA	TCGA-E2-A1LL	SYNE1	SNP	Missense_Mutation	6	152749432	C	G	24	43
BRCA	TCGA-E2-A1LL	SYNE1	SNP	Missense_Mutation	6	152809633	T	G	56	58
BRCA	TCGA-E2-A1LL	HTR5A	SNP	Missense_Mutation	7	154863345	G	T	48	55
BRCA	TCGA-E2-A1LL	HDAC9	SNP	Missense_Mutation	7	18669013	G	T	33	73
BRCA	TCGA-E2-A1LL	TWISTNB	SNP	Missense_Mutation	7	19748611	C	T	23	46
BRCA	TCGA-E2-A1LL	NCF1	SNP	Missense_Mutation	7	74197317	G	A	38	74
BRCA	TCGA-E2-A1LL	KIAA1324L	SNP	Silent	7	86554947	C	T	23	39
BRCA	TCGA-E2-A1LL	DNAI1	SNP	Splice_Site	9	34500839	T	G	57	86
BRCA	TCGA-E2-A1LL	ANKRD18A	SNP	Missense_Mutation	9	38595563	T	C	56	52
BRCA	TCGA-E2-A1LS	ARHGEF10L	SNP	Silent	1	17991021	G	A	47	60
BRCA	TCGA-E2-A1LS	ASPM	SNP	Missense_Mutation	1	197102711	G	T	33	58
BRCA	TCGA-E2-A1LS	PIGR	SNP	Missense_Mutation	1	207104865	T	C	63	38
BRCA	TCGA-E2-A1LS	C4BPA	SNP	Missense_Mutation	1	207288791	G	A	40	42
BRCA	TCGA-E2-A1LS	DEM1	DEL	Frame_Shift_Del	1	40980239	AGACAGTGTCAGCAGAAGCCTCAGGGTTCTC	-	11	59
BRCA	TCGA-E2-A1LS	NEUROG3	SNP	Missense_Mutation	10	71332562	G	T	46	61
BRCA	TCGA-E2-A1LS	DYNC2H1	SNP	Missense_Mutation	11	103074420	A	T	3	58
BRCA	TCGA-E2-A1LS	ARHGAP20	SNP	Missense_Mutation	11	110451644	C	T	26	50
BRCA	TCGA-E2-A1LS	PIK3C2A	SNP	Missense_Mutation	11	17118747	G	C	45	100
BRCA	TCGA-E2-A1LS	TH	SNP	Missense_Mutation	11	2192959	C	G	29	86
BRCA	TCGA-E2-A1LS	OR5M11	SNP	Missense_Mutation	11	56310459	G	T	41	68
BRCA	TCGA-E2-A1LS	OR5M10	DNP	Missense_Mutation	11	56344846	TT	AG	52	86
BRCA	TCGA-E2-A1LS	CAPN1	SNP	Missense_Mutation	11	64953645	A	C	1	85
BRCA	TCGA-E2-A1LS	RNASEH2C	DEL	Frame_Shift_Del	11	65487853	CCCGTAGACAGCGG	-	22	67
BRCA	TCGA-E2-A1LS	CCDC87	SNP	Missense_Mutation	11	66358801	C	G	32	51
BRCA	TCGA-E2-A1LS	ODZ4	SNP	Silent	11	78387425	G	T	41	53
BRCA	TCGA-E2-A1LS	NLRP10	SNP	Silent	11	7982328	T	A	61	38
BRCA	TCGA-E2-A1LS	DLG2	SNP	Missense_Mutation	11	83344318	T	C	62	92
BRCA	TCGA-E2-A1LS	PIWIL4	SNP	Silent	11	94322383	G	T	47	51
BRCA	TCGA-E2-A1LS	TUBA1A	SNP	Missense_Mutation	12	49580453	G	A	40	98
BRCA	TCGA-E2-A1LS	VWF	SNP	Missense_Mutation	12	6122772	T	C	50	68
BRCA	TCGA-E2-A1LS	SACS	SNP	Missense_Mutation	13	23913912	C	T	28	85
BRCA	TCGA-E2-A1LS	ZC3H13	DEL	Frame_Shift_Del	13	46549603	CT	-	28	51
BRCA	TCGA-E2-A1LS	CDADC1	SNP	Missense_Mutation	13	49830003	T	C	61	59
BRCA	TCGA-E2-A1LS	GPC6	SNP	Missense_Mutation	13	94197607	A	T	1	64
BRCA	TCGA-E2-A1LS	MAP1A	SNP	Missense_Mutation	15	43815340	A	G	13	78
BRCA	TCGA-E2-A1LS	ONECUT1	SNP	Missense_Mutation	15	53081031	A	G	6	86
BRCA	TCGA-E2-A1LS	SRCAP	DEL	Frame_Shift_Del	16	30723194	CATT	-	17	65
BRCA	TCGA-E2-A1LS	FUS	SNP	Missense_Mutation	16	31195247	T	A	54	69
BRCA	TCGA-E2-A1LS	BCMO1	SNP	Missense_Mutation	16	81301669	A	T	3	88
BRCA	TCGA-E2-A1LS	SLC43A2	SNP	Missense_Mutation	17	1486583	G	T	36	84
BRCA	TCGA-E2-A1LS	NF1	DEL	Frame_Shift_Del	17	29527502	AG	-	7	46
BRCA	TCGA-E2-A1LS	EFCAB3	SNP	Missense_Mutation	17	60493497	T	C	64	73
BRCA	TCGA-E2-A1LS	TP53	SNP	Missense_Mutation	17	7577082	C	T	30	80
BRCA	TCGA-E2-A1LS	ACTG1	SNP	Missense_Mutation	17	79478402	T	C	54	74
BRCA	TCGA-E2-A1LS	FCGBP	SNP	Missense_Mutation	19	40357561	C	A	18	54
BRCA	TCGA-E2-A1LS	FCGBP	SNP	Missense_Mutation	19	40430361	C	T	19	73
BRCA	TCGA-E2-A1LS	LILRA6	SNP	Silent	19	54745621	G	A	41	45
BRCA	TCGA-E2-A1LS	SBK2	SNP	Missense_Mutation	19	56047657	G	T	43	65
BRCA	TCGA-E2-A1LS	NLRP11	SNP	Silent	19	56320356	C	T	27	38
BRCA	TCGA-E2-A1LS	SERPINE2	SNP	Missense_Mutation	2	224847402	T	C	61	59
BRCA	TCGA-E2-A1LS	EPT1	SNP	Missense_Mutation	2	26587719	C	T	27	82
BRCA	TCGA-E2-A1LS	CIB4	SNP	Missense_Mutation	2	26806664	G	T	40	49
BRCA	TCGA-E2-A1LS	SUPT7L	DEL	Frame_Shift_Del	2	27883995	TC	-	62	76
BRCA	TCGA-E2-A1LS	PRKD3	DEL	Frame_Shift_Del	2	37543569	CTTAG	-	32	56
BRCA	TCGA-E2-A1LS	DSCAM	SNP	Missense_Mutation	21	41725667	G	T	47	96
BRCA	TCGA-E2-A1LS	UMODL1	SNP	Missense_Mutation	21	43543099	G	C	37	74
BRCA	TCGA-E2-A1LS	TOP3B	SNP	Silent	22	22318572	A	T	11	47
BRCA	TCGA-E2-A1LS	BPIFC	SNP	Missense_Mutation	22	32853309	G	T	41	74
BRCA	TCGA-E2-A1LS	MYH9	SNP	Nonsense_Mutation	22	36680272	G	A	46	99
BRCA	TCGA-E2-A1LS	TCEAL3	SNP	Missense_Mutation	23	102864236	G	A	43	59
BRCA	TCGA-E2-A1LS	SCML1	DEL	Frame_Shift_Del	23	17770041	AG	-	7	35
BRCA	TCGA-E2-A1LS	APOOL	SNP	Missense_Mutation	23	84329041	T	A	52	58
BRCA	TCGA-E2-A1LS	ARHGAP31	SNP	Missense_Mutation	3	119128524	G	C	33	76
BRCA	TCGA-E2-A1LS	TMEM115	SNP	Silent	3	50392897	T	C	56	49
BRCA	TCGA-E2-A1LS	ROBO2	SNP	Missense_Mutation	3	77614243	T	A	58	52
BRCA	TCGA-E2-A1LS	C4orf21	SNP	Missense_Mutation	4	113544995	C	G	20	71
BRCA	TCGA-E2-A1LS	GUCY1B3	SNP	Missense_Mutation	4	156723562	A	G	1	90
BRCA	TCGA-E2-A1LS	PLAC8	SNP	Missense_Mutation	4	84015928	T	C	58	73
BRCA	TCGA-E2-A1LS	HSPA4	DEL	In_Frame_Del	5	132439997	AAAAATGCAGAGCAG	-	1	63
BRCA	TCGA-E2-A1LS	CDHR2	SNP	Missense_Mutation	5	176017599	A	T	2	48
BRCA	TCGA-E2-A1LS	CMYA5	SNP	Missense_Mutation	5	79041083	G	T	33	67
BRCA	TCGA-E2-A1LS	SHPRH	SNP	Missense_Mutation	6	146247363	G	A	38	52
BRCA	TCGA-E2-A1LS	PGBD1	SNP	Silent	6	28269872	G	A	37	46
BRCA	TCGA-E2-A1LS	GPR110	SNP	Silent	6	46982477	G	A	35	52
BRCA	TCGA-E2-A1LS	HCRTR2	SNP	Missense_Mutation	6	55145230	A	T	13	89
BRCA	TCGA-E2-A1LS	DST	SNP	Silent	6	56485202	A	C	7	24
BRCA	TCGA-E2-A1LS	MALSU1	SNP	Silent	7	23349135	G	C	45	51
BRCA	TCGA-E2-A1LS	MSRA	SNP	Silent	8	10285663	T	C	64	44
BRCA	TCGA-E2-A1LS	ANK1	SNP	Missense_Mutation	8	41526060	C	A	23	64
BRCA	TCGA-E2-A1LS	RP1	INS	Frame_Shift_Ins	8	55540278	-	T	20	48
BRCA	TCGA-E2-A1LS	ANKS6	SNP	Missense_Mutation	9	101530484	T	A	64	65
BRCA	TCGA-E2-A1LS	DNM1	SNP	Missense_Mutation	9	131010957	C	A	20	58
BRCA	TCGA-E2-A1LS	NTRK2	SNP	Missense_Mutation	9	87366922	G	A	46	86
BRCA	TCGA-E9-A1N3	CELA2A	SNP	Missense_Mutation	1	15788123	G	T	34	54
BRCA	TCGA-E9-A1N3	ADCY10	SNP	Silent	1	167793766	G	T	39	52
BRCA	TCGA-E9-A1N3	MATN1	SNP	Missense_Mutation	1	31191659	T	A	55	68
BRCA	TCGA-E9-A1N3	GATA3	INS	Frame_Shift_Ins	10	8115955	-	C	6	92
BRCA	TCGA-E9-A1N3	OR5T1	SNP	Splice_site	11	56043116	T	C	51	50
BRCA	TCGA-E9-A1N3	SLC22A10	SNP	Splice_site	11	63072159	G	A	42	58
BRCA	TCGA-E9-A1N3	NAV3	SNP	Missense_Mutation	12	78569113	C	A	32	100
BRCA	TCGA-E9-A1N3	APAF1	SNP	Missense_Mutation	12	99074131	C	G	32	97
BRCA	TCGA-E9-A1N3	PITPNC1	SNP	Missense_Mutation	17	65688873	G	A	40	73
BRCA	TCGA-E9-A1N3	ZNF14	SNP	Missense_Mutation	19	19823822	C	A	17	52
BRCA	TCGA-E9-A1N3	SUPT5H	SNP	Nonsense_Mutation	19	39964082	C	T	17	93
BRCA	TCGA-E9-A1N3	LILRB4	SNP	Missense_Mutation	19	55176608	C	T	24	50
BRCA	TCGA-E9-A1N3	SLC2A4RG	SNP	Silent	20	62373244	G	A	35	52
BRCA	TCGA-E9-A1N3	EP300	INS	Frame_Shift_Ins	22	41527610	-	G	21	87
BRCA	TCGA-E9-A1N3	COL6A5	SNP	Missense_Mutation	3	130116598	C	T	27	82
BRCA	TCGA-E9-A1N3	OR5K2	SNP	Missense_Mutation	3	98216606	T	G	60	53
BRCA	TCGA-E9-A1N3	MTTP	SNP	Silent	4	100510904	T	C	51	54
BRCA	TCGA-E9-A1N3	DOCK2	SNP	Missense_Mutation	5	169445994	T	A	51	90
BRCA	TCGA-E9-A1N3	AKD1	SNP	Missense_Mutation	6	109993173	C	A	17	53
BRCA	TCGA-E9-A1N3	CUX1	SNP	Nonsense_Mutation	7	101740745	G	T	33	100
BRCA	TCGA-E9-A1N3	MCM7	SNP	Missense_Mutation	7	99696737	C	T	19	94
BRCA	TCGA-E9-A1N4	MDM4	SNP	Missense_Mutation	1	204507346	G	A	33	58
BRCA	TCGA-E9-A1N4	TCERG1L	SNP	Missense_Mutation	10	133058579	G	A	38	57
BRCA	TCGA-E9-A1N4	ITGA8	SNP	Missense_Mutation	10	15614253	A	G	7	82
BRCA	TCGA-E9-A1N4	TRIM64B	SNP	Silent	11	89607385	G	C	37	47
BRCA	TCGA-E9-A1N4	TXNRD1	SNP	Missense_Mutation	12	104682625	G	A	39	52
BRCA	TCGA-E9-A1N4	ABCC9	SNP	Missense_Mutation	12	22005315	G	A	40	76
BRCA	TCGA-E9-A1N4	KCNA5	SNP	Missense_Mutation	12	5153951	T	A	62	75
BRCA	TCGA-E9-A1N4	TMPO	SNP	Missense_Mutation	12	98926744	G	A	37	76
BRCA	TCGA-E9-A1N4	FREM2	SNP	Missense_Mutation	13	39453040	G	A	45	66
BRCA	TCGA-E9-A1N4	DHRS12	SNP	Silent	13	52345423	G	A	45	53
BRCA	TCGA-E9-A1N4	MAPKBP1	SNP	Splice_site	15	42111445	C	T	25	68
BRCA	TCGA-E9-A1N4	BZRAP1	SNP	Splice_site	17	56382901	C	G	24	81
BRCA	TCGA-E9-A1N4	CALR3	SNP	Silent	19	16593495	C	T	19	32
BRCA	TCGA-E9-A1N4	CHAF1B	SNP	Silent	21	37771831	A	G	16	39
BRCA	TCGA-E9-A1N4	F8	SNP	Nonsense_Mutation	23	154159944	C	T	30	77
BRCA	TCGA-E9-A1N4	DCAF8L1	SNP	Missense_Mutation	23	27999081	C	A	18	58
BRCA	TCGA-E9-A1N4	MXRA5	SNP	Missense_Mutation	23	3235331	C	T	27	61
BRCA	TCGA-E9-A1N4	KIF4A	SNP	Silent	23	69510363	C	T	32	73
BRCA	TCGA-E9-A1N4	MED12	SNP	Missense_Mutation	23	70356252	G	A	37	76
BRCA	TCGA-E9-A1N4	FXR1	SNP	Missense_Mutation	3	180680687	G	C	33	83
BRCA	TCGA-E9-A1N4	ZNF35	SNP	Missense_Mutation	3	44701222	C	T	17	60
BRCA	TCGA-E9-A1N4	C4orf34	SNP	Nonstop_Mutation	4	39553738	T	A	50	54
BRCA	TCGA-E9-A1N4	MAP3K1	SNP	Nonsense_Mutation	5	56178577	G	T	45	92
BRCA	TCGA-E9-A1N4	POU3F2	SNP	Silent	6	99283256	G	C	41	58
BRCA	TCGA-E9-A1N4	EMID2	SNP	Silent	7	101091052	G	T	41	50
BRCA	TCGA-E9-A1N4	YWHAG	SNP	Missense_Mutation	7	75959501	G	C	33	100
BRCA	TCGA-E9-A1N4	SLC25A13	SNP	Silent	7	95822421	G	A	37	52
BRCA	TCGA-E9-A1N4	LSM1	SNP	Silent	8	38033806	G	A	37	64
BRCA	TCGA-E9-A1N4	NCOA2	SNP	Missense_Mutation	8	71078828	G	T	44	100
BRCA	TCGA-E9-A1N5	PTPRC	SNP	Silent	1	198697545	C	T	17	51
BRCA	TCGA-E9-A1N5	TMCC2	SNP	Missense_Mutation	1	205210727	C	T	19	59
BRCA	TCGA-E9-A1N5	CEP170	SNP	Missense_Mutation	1	243327844	C	T	24	79
BRCA	TCGA-E9-A1N5	IFITM3	SNP	Missense_Mutation	11	319891	T	A	51	37
BRCA	TCGA-E9-A1N5	MEN1	DEL	Frame_Shift_Del	11	64577353	AGGTG	-	15	84
BRCA	TCGA-E9-A1N5	EHBP1L1	SNP	Missense_Mutation	11	65350230	C	G	32	53
BRCA	TCGA-E9-A1N5	EHBP1L1	SNP	Silent	11	65351789	C	G	30	50
BRCA	TCGA-E9-A1N5	EHBP1L1	SNP	Nonsense_Mutation	11	65351858	C	G	18	53
BRCA	TCGA-E9-A1N5	SLCO1C1	SNP	Missense_Mutation	12	20905442	G	A	35	67
BRCA	TCGA-E9-A1N5	CACNB3	SNP	Missense_Mutation	12	49220772	A	G	12	90
BRCA	TCGA-E9-A1N5	MEF2A	SNP	Missense_Mutation	15	100247006	A	G	3	91
BRCA	TCGA-E9-A1N5	HERC1	SNP	Missense_Mutation	15	64041947	G	A	45	100
BRCA	TCGA-E9-A1N5	C16orf48	SNP	Silent	16	67697208	C	A	25	47
BRCA	TCGA-E9-A1N5	TP53	SNP	Missense_Mutation	17	7578271	T	C	51	76
BRCA	TCGA-E9-A1N5	NEB	DEL	In_Frame_Del	2	152387588	CCTTGTTGTATT	-	26	83
BRCA	TCGA-E9-A1N5	DNMT3B	SNP	Silent	20	31376692	G	A	48	52
BRCA	TCGA-E9-A1N5	SAMHD1	SNP	Missense_Mutation	20	35533890	C	G	32	56
BRCA	TCGA-E9-A1N5	LSM14B	SNP	Missense_Mutation	20	60701300	G	A	45	53
BRCA	TCGA-E9-A1N5	AFF2	SNP	Missense_Mutation	23	147733596	G	T	37	83
BRCA	TCGA-E9-A1N5	DMD	SNP	Missense_Mutation	23	31165493	G	A	38	96
BRCA	TCGA-E9-A1N5	WNT7A	SNP	Missense_Mutation	3	13896211	C	T	31	77
BRCA	TCGA-E9-A1N5	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-E9-A1N5	MUC4	SNP	Missense_Mutation	3	195508571	T	C	59	30
BRCA	TCGA-E9-A1N5	MUC4	SNP	Missense_Mutation	3	195513481	G	A	46	39
BRCA	TCGA-E9-A1N5	FGG	SNP	Splice_Site	4	155533321	T	A	55	53
BRCA	TCGA-E9-A1N5	GBA3	SNP	Silent	4	22749308	G	A	46	42
BRCA	TCGA-E9-A1N5	HEXB	SNP	Missense_Mutation	5	73985157	C	T	29	48
BRCA	TCGA-E9-A1N5	UBR2	SNP	Missense_Mutation	6	42585066	C	T	25	69
BRCA	TCGA-E9-A1N5	OR2A5	SNP	Silent	7	143747698	T	C	63	44
BRCA	TCGA-E9-A1N5	SEPT14	SNP	Silent	7	55914256	C	T	29	50
BRCA	TCGA-E9-A1N5	ZNF804B	SNP	Missense_Mutation	7	88963249	T	C	52	40
BRCA	TCGA-E9-A1N5	CDCA2	SNP	Missense_Mutation	8	25341520	A	G	16	37
BRCA	TCGA-E9-A1N8	TXLNA	SNP	Missense_Mutation	1	32657943	T	A	53	79
BRCA	TCGA-E9-A1N8	THRAP3	SNP	Missense_Mutation	1	36752151	A	C	14	67
BRCA	TCGA-E9-A1N8	HERC4	DEL	Frame_Shift_Del	10	69695914	TTTG	-	64	88
BRCA	TCGA-E9-A1N8	BEST1	SNP	Missense_Mutation	11	61727502	A	G	6	64
BRCA	TCGA-E9-A1N8	FAT3	SNP	Missense_Mutation	11	92507249	G	T	43	98
BRCA	TCGA-E9-A1N8	RAB27A	SNP	Missense_Mutation	15	55497761	G	A	45	82
BRCA	TCGA-E9-A1N8	NFAT5	SNP	Splice_Site	16	69729284	T	G	57	83
BRCA	TCGA-E9-A1N8	HPR	DEL	Frame_Shift_Del	16	72107693	GT	-	40	56
BRCA	TCGA-E9-A1N8	JMJD6	SNP	Missense_Mutation	17	74716578	A	C	4	92
BRCA	TCGA-E9-A1N8	TP53	INS	Frame_Shift_Ins	17	7577514	-	T	48	80
BRCA	TCGA-E9-A1N8	ARMC6	SNP	Missense_Mutation	19	19168318	C	A	25	50
BRCA	TCGA-E9-A1N8	ZNF540	SNP	Missense_Mutation	19	38103247	G	A	37	50
BRCA	TCGA-E9-A1N8	KLK13	SNP	Silent	19	51563338	A	G	1	50
BRCA	TCGA-E9-A1N8	ZNF649	SNP	Missense_Mutation	19	52394487	C	G	32	47
BRCA	TCGA-E9-A1N8	RANBP2	SNP	Missense_Mutation	2	109367878	T	G	50	66
BRCA	TCGA-E9-A1N8	MERTK	SNP	Missense_Mutation	2	112740526	G	T	44	47
BRCA	TCGA-E9-A1N8	CCDC148	SNP	Missense_Mutation	2	159170392	C	G	20	47
BRCA	TCGA-E9-A1N8	SCN9A	SNP	Missense_Mutation	2	167159671	C	T	31	49
BRCA	TCGA-E9-A1N8	BAGE2	SNP	Splice_site	21	11058322	C	T	31	67
BRCA	TCGA-E9-A1N8	LZTR1	INS	Frame_Shift_Ins	22	21351200	-	GGCACTGGACATG	7	88
BRCA	TCGA-E9-A1N8	RPL10	SNP	Missense_Mutation	23	153628945	T	C	62	83
BRCA	TCGA-E9-A1N8	DMD	SNP	Missense_Mutation	23	31200885	A	T	12	90
BRCA	TCGA-E9-A1N8	MXRA5	DEL	Frame_Shift_Del	23	3238507	AAAG	-	1	74
BRCA	TCGA-E9-A1N8	TBC1D25	SNP	Missense_Mutation	23	48418750	T	C	60	53
BRCA	TCGA-E9-A1N8	MFSD1	SNP	Missense_Mutation	3	158543842	C	T	31	60
BRCA	TCGA-E9-A1N8	MRS2	SNP	Nonsense_Mutation	6	24409715	G	T	33	100
BRCA	TCGA-E9-A1N8	MDN1	SNP	Missense_Mutation	6	90503844	C	T	29	96
BRCA	TCGA-E9-A1N8	MLL3	SNP	Missense_Mutation	7	151962208	G	C	45	98
BRCA	TCGA-E9-A1N8	CLTA	SNP	Silent	9	36211699	C	T	25	80
BRCA	TCGA-E9-A1N8	PRUNE2	SNP	Silent	9	79324112	A	T	10	47
BRCA	TCGA-E9-A1N9	PRAMEF11	SNP	Missense_Mutation	1	12885090	T	G	63	47
BRCA	TCGA-E9-A1N9	ZNF687	INS	In_Frame_Ins	1	151263677	-	ACA	41	75
BRCA	TCGA-E9-A1N9	PRRC2C	SNP	Silent	1	171494044	A	G	1	60
BRCA	TCGA-E9-A1N9	MACF1	SNP	Missense_Mutation	1	39838233	T	C	51	69
BRCA	TCGA-E9-A1N9	RLF	SNP	Missense_Mutation	1	40702996	A	T	4	47
BRCA	TCGA-E9-A1N9	PRPF38A	SNP	Missense_Mutation	1	52871446	G	C	45	77
BRCA	TCGA-E9-A1N9	SLC39A12	SNP	Missense_Mutation	10	18242296	G	A	34	48
BRCA	TCGA-E9-A1N9	MAML2	DEL	In_Frame_Del	11	95825372	TGT	-	55	51
BRCA	TCGA-E9-A1N9	DHX8	SNP	Missense_Mutation	17	41570310	C	A	18	69
BRCA	TCGA-E9-A1N9	ADAM11	SNP	Missense_Mutation	17	42855138	G	C	48	79
BRCA	TCGA-E9-A1N9	KCNH6	SNP	Silent	17	61619777	C	A	29	69
BRCA	TCGA-E9-A1N9	PITPNM3	SNP	Missense_Mutation	17	6387550	G	T	47	82
BRCA	TCGA-E9-A1N9	RNF157	SNP	Missense_Mutation	17	74150372	G	A	40	61
BRCA	TCGA-E9-A1N9	TP53	SNP	Nonsense_Mutation	17	7578263	G	A	39	67
BRCA	TCGA-E9-A1N9	DMKN	SNP	Silent	19	36002487	G	A	38	50
BRCA	TCGA-E9-A1N9	PNMAL1	DEL	In_Frame_Del	19	46973547	TTC	-	60	33
BRCA	TCGA-E9-A1N9	LILRB5	SNP	Splice_Site	19	54758227	C	T	18	47
BRCA	TCGA-E9-A1N9	FAM84A	SNP	Silent	2	14774361	T	C	64	71
BRCA	TCGA-E9-A1N9	TANC1	SNP	Missense_Mutation	2	160043450	T	C	54	94
BRCA	TCGA-E9-A1N9	SCN7A	SNP	Missense_Mutation	2	167273377	T	C	49	58
BRCA	TCGA-E9-A1N9	LRP2	SNP	Splice_site	2	169993902	C	A	24	68
BRCA	TCGA-E9-A1N9	KRTAP22-2	SNP	Missense_Mutation	21	31962623	G	T	33	29
BRCA	TCGA-E9-A1N9	DNAJC28	SNP	Missense_Mutation	21	34860884	C	G	26	56
BRCA	TCGA-E9-A1N9	DNAJC28	SNP	Silent	21	34861683	C	T	29	52
BRCA	TCGA-E9-A1N9	DIP2A	SNP	Silent	21	47910571	C	G	23	31
BRCA	TCGA-E9-A1N9	MID1	SNP	Missense_Mutation	23	10442722	G	A	44	85
BRCA	TCGA-E9-A1N9	WDR13	SNP	Missense_Mutation	23	48460302	C	T	27	94
BRCA	TCGA-E9-A1N9	CCDC39	SNP	Missense_Mutation	3	180379771	C	T	29	92
BRCA	TCGA-E9-A1N9	ALG3	SNP	Missense_Mutation	3	183963556	C	T	19	70
BRCA	TCGA-E9-A1N9	DCHS2	SNP	Missense_Mutation	4	155160378	T	A	60	50
BRCA	TCGA-E9-A1N9	DCHS2	SNP	Silent	4	155411020	G	T	43	57
BRCA	TCGA-E9-A1N9	LCORL	SNP	Missense_Mutation	4	17885617	C	T	20	56
BRCA	TCGA-E9-A1N9	EPHA5	SNP	Missense_Mutation	4	66356262	A	T	10	94
BRCA	TCGA-E9-A1N9	PTPN13	SNP	Missense_Mutation	4	87671758	C	G	28	88
BRCA	TCGA-E9-A1N9	PCDHA2	SNP	Missense_Mutation	5	140174742	C	T	23	65
BRCA	TCGA-E9-A1N9	PCDHB6	SNP	Silent	5	140531962	G	A	39	46
BRCA	TCGA-E9-A1N9	PCDHGB3	SNP	Silent	5	140752364	C	A	25	55
BRCA	TCGA-E9-A1N9	GNB2L1	SNP	Silent	5	180665141	G	C	34	51
BRCA	TCGA-E9-A1N9	CDH9	SNP	Missense_Mutation	5	26881562	C	A	32	83
BRCA	TCGA-E9-A1N9	PARP8	SNP	Nonsense_Mutation	5	50130705	G	T	41	45
BRCA	TCGA-E9-A1N9	MAP3K1	SNP	Missense_Mutation	5	56177954	C	T	30	90
BRCA	TCGA-E9-A1N9	TMEM171	SNP	Missense_Mutation	5	72424228	A	T	4	66
BRCA	TCGA-E9-A1N9	LPA	SNP	Missense_Mutation	6	161007579	T	C	54	69
BRCA	TCGA-E9-A1N9	EGFL8	SNP	Missense_Mutation	6	32133979	G	A	39	54
BRCA	TCGA-E9-A1N9	HYAL4	SNP	Missense_Mutation	7	123508629	A	G	16	64
BRCA	TCGA-E9-A1N9	ETV1	SNP	Missense_Mutation	7	14025746	G	T	40	72
BRCA	TCGA-E9-A1N9	PTPRN2	SNP	Missense_Mutation	7	157691399	G	T	33	81
BRCA	TCGA-E9-A1N9	NFE2L3	DEL	Frame_Shift_Del	7	26225179	AA	-	13	50
BRCA	TCGA-E9-A1N9	STEAP1	SNP	Silent	7	89790307	G	A	45	50
BRCA	TCGA-E9-A1N9	PTDSS1	SNP	Missense_Mutation	8	97274333	G	A	39	93
BRCA	TCGA-E9-A1N9	OR13C5	SNP	Missense_Mutation	9	107361066	G	T	35	62
BRCA	TCGA-E9-A1N9	GTF3C4	SNP	Missense_Mutation	9	135553785	A	G	7	88
BRCA	TCGA-E9-A1NA	SV2A	SNP	Missense_Mutation	1	149880762	C	A	21	90
BRCA	TCGA-E9-A1NA	CDK11B	SNP	Missense_Mutation	1	1573174	C	T	30	93
BRCA	TCGA-E9-A1NA	FCRL5	SNP	Missense_Mutation	1	157504397	C	A	25	49
BRCA	TCGA-E9-A1NA	PTPN14	SNP	Silent	1	214568293	C	T	31	18
BRCA	TCGA-E9-A1NA	SDE2	SNP	Missense_Mutation	1	226175683	C	G	29	68
BRCA	TCGA-E9-A1NA	WDR64	SNP	Splice_Site	1	241936093	G	T	35	72
BRCA	TCGA-E9-A1NA	CSMD2	SNP	Missense_Mutation	1	34100819	T	C	58	92
BRCA	TCGA-E9-A1NA	FGFR2	SNP	Missense_Mutation	10	123247597	C	T	17	100
BRCA	TCGA-E9-A1NA	GATA3	INS	Frame_Shift_Ins	10	8111513	-	G	51	47
BRCA	TCGA-E9-A1NA	NRG3	DEL	In_Frame_Del	10	84711230	GAA	-	45	82
BRCA	TCGA-E9-A1NA	MYOF	SNP	Missense_Mutation	10	95069836	C	T	23	74
BRCA	TCGA-E9-A1NA	CRTAC1	SNP	Missense_Mutation	10	99655137	G	A	40	68
BRCA	TCGA-E9-A1NA	PANX3	SNP	Missense_Mutation	11	124481538	G	A	40	55
BRCA	TCGA-E9-A1NA	SLC17A6	SNP	Missense_Mutation	11	22397628	T	A	63	67
BRCA	TCGA-E9-A1NA	OR4A5	SNP	Silent	11	51412084	G	A	33	14
BRCA	TCGA-E9-A1NA	SSRP1	SNP	Missense_Mutation	11	57093910	C	G	32	74
BRCA	TCGA-E9-A1NA	KLHL35	SNP	Missense_Mutation	11	75136581	C	T	19	81
BRCA	TCGA-E9-A1NA	OAS2	SNP	Missense_Mutation	12	113435403	G	T	43	71
BRCA	TCGA-E9-A1NA	GALNT9	SNP	Missense_Mutation	12	132685719	T	G	62	65
BRCA	TCGA-E9-A1NA	ACVRL1	SNP	Missense_Mutation	12	52307765	T	G	55	89
BRCA	TCGA-E9-A1NA	SMARCC2	SNP	Missense_Mutation	12	56580003	T	C	63	90
BRCA	TCGA-E9-A1NA	NAV3	SNP	Missense_Mutation	12	78530992	G	C	39	75
BRCA	TCGA-E9-A1NA	ATP11A	SNP	Silent	13	113481187	C	A	29	35
BRCA	TCGA-E9-A1NA	NID2	SNP	Silent	14	52493941	G	A	39	33
BRCA	TCGA-E9-A1NA	STARD9	SNP	Missense_Mutation	15	42982291	G	A	45	55
BRCA	TCGA-E9-A1NA	MYO9A	SNP	Splice_site	15	72320073	G	A	40	65
BRCA	TCGA-E9-A1NA	BTBD1	SNP	Missense_Mutation	15	83686848	G	T	48	100
BRCA	TCGA-E9-A1NA	ACSM5	SNP	Silent	16	20422836	C	A	30	43
BRCA	TCGA-E9-A1NA	ACD	SNP	Missense_Mutation	16	67694153	G	C	43	44
BRCA	TCGA-E9-A1NA	AP1G1	SNP	Missense_Mutation	16	71805063	G	T	44	68
BRCA	TCGA-E9-A1NA	DHRS13	SNP	Missense_Mutation	17	27228573	C	G	23	59
BRCA	TCGA-E9-A1NA	SLC39A6	SNP	Missense_Mutation	18	33691125	C	A	30	97
BRCA	TCGA-E9-A1NA	LAMA1	SNP	Silent	18	6993719	C	A	29	52
BRCA	TCGA-E9-A1NA	TSHZ1	SNP	Missense_Mutation	18	72998785	C	G	21	64
BRCA	TCGA-E9-A1NA	ZSWIM4	SNP	Missense_Mutation	19	13934173	G	A	41	89
BRCA	TCGA-E9-A1NA	DAZAP1	SNP	Nonsense_Mutation	19	1432662	C	T	29	83
BRCA	TCGA-E9-A1NA	SLC5A5	SNP	Missense_Mutation	19	18004631	G	T	47	55
BRCA	TCGA-E9-A1NA	ZNF829	SNP	Splice_site	19	37398926	C	G	30	62
BRCA	TCGA-E9-A1NA	RAX2	SNP	Missense_Mutation	19	3771698	C	T	22	47
BRCA	TCGA-E9-A1NA	TSKS	SNP	Missense_Mutation	19	50266424	G	C	34	52
BRCA	TCGA-E9-A1NA	POLD1	SNP	Missense_Mutation	19	50905959	C	T	27	66
BRCA	TCGA-E9-A1NA	NLRP4	SNP	Silent	19	56372911	T	G	63	36
BRCA	TCGA-E9-A1NA	LRP1B	SNP	Missense_Mutation	2	141597642	C	A	30	100
BRCA	TCGA-E9-A1NA	FAM49A	SNP	Missense_Mutation	2	16740738	G	C	41	98
BRCA	TCGA-E9-A1NA	PDE11A	SNP	Missense_Mutation	2	178681608	A	G	4	91
BRCA	TCGA-E9-A1NA	PRKD3	SNP	Silent	2	37501751	G	T	45	69
BRCA	TCGA-E9-A1NA	PDYN	SNP	Missense_Mutation	20	1961172	C	G	32	77
BRCA	TCGA-E9-A1NA	NOP56	SNP	Silent	20	2636061	A	G	9	48
BRCA	TCGA-E9-A1NA	LRCH2	SNP	Missense_Mutation	23	114357648	G	A	37	79
BRCA	TCGA-E9-A1NA	GRIA3	SNP	Missense_Mutation	23	122387187	T	C	50	89
BRCA	TCGA-E9-A1NA	IGSF1	SNP	Missense_Mutation	23	130410058	C	T	28	75
BRCA	TCGA-E9-A1NA	GPR112	INS	Frame_Shift_Ins	23	135441470	-	T	8	49
BRCA	TCGA-E9-A1NA	MAGEC1	SNP	Silent	23	140995860	C	A	24	48
BRCA	TCGA-E9-A1NA	MXRA5	SNP	Silent	23	3241188	A	C	11	47
BRCA	TCGA-E9-A1NA	NFKBIZ	INS	Frame_Shift_Ins	3	101572147	-	G	11	54
BRCA	TCGA-E9-A1NA	NFKBIZ	SNP	Splice_site	3	101573907	G	T	36	82
BRCA	TCGA-E9-A1NA	TF	SNP	Missense_Mutation	3	133473400	C	A	18	44
BRCA	TCGA-E9-A1NA	ZBTB38	SNP	Silent	3	141162010	G	A	37	43
BRCA	TCGA-E9-A1NA	ETV5	SNP	Missense_Mutation	3	185774898	C	T	31	99
BRCA	TCGA-E9-A1NA	CLDN16	SNP	Nonsense_Mutation	3	190105967	C	G	29	49
BRCA	TCGA-E9-A1NA	BDH1	SNP	Missense_Mutation	3	197249622	C	T	30	92
BRCA	TCGA-E9-A1NA	IFRD2	SNP	Missense_Mutation	3	50326248	C	T	19	94
BRCA	TCGA-E9-A1NA	FREM3	SNP	Missense_Mutation	4	144618543	C	T	29	60
BRCA	TCGA-E9-A1NA	SH3D19	SNP	Missense_Mutation	4	152043323	C	A	29	68
BRCA	TCGA-E9-A1NA	TDO2	SNP	Missense_Mutation	4	156825222	A	G	2	55
BRCA	TCGA-E9-A1NA	SNX25	SNP	Missense_Mutation	4	186274707	G	T	47	62
BRCA	TCGA-E9-A1NA	PCDHAC1	SNP	Missense_Mutation	5	140307514	C	T	31	52
BRCA	TCGA-E9-A1NA	DPYSL3	SNP	Missense_Mutation	5	146785290	C	T	30	100
BRCA	TCGA-E9-A1NA	C6	SNP	Missense_Mutation	5	41200004	C	A	32	68
BRCA	TCGA-E9-A1NA	IQGAP2	SNP	Missense_Mutation	5	75757398	T	A	52	86
BRCA	TCGA-E9-A1NA	ARSB	SNP	Missense_Mutation	5	78181490	C	A	26	99
BRCA	TCGA-E9-A1NA	XRCC4	SNP	Missense_Mutation	5	82500683	G	A	45	58
BRCA	TCGA-E9-A1NA	CCNH	SNP	Nonsense_Mutation	5	86695302	T	A	62	77
BRCA	TCGA-E9-A1NA	RAET1G	SNP	Silent	6	150239333	C	G	29	27
BRCA	TCGA-E9-A1NA	ITPR3	SNP	Silent	6	33647763	C	T	17	84
BRCA	TCGA-E9-A1NA	SLC22A7	SNP	Silent	6	43269378	C	T	24	53
BRCA	TCGA-E9-A1NA	IQUB	SNP	Missense_Mutation	7	123150084	C	G	20	49
BRCA	TCGA-E9-A1NA	MGAM	SNP	Silent	7	141786092	C	T	29	57
BRCA	TCGA-E9-A1NA	DNAH11	SNP	Missense_Mutation	7	21920374	C	T	32	67
BRCA	TCGA-E9-A1NA	SDK1	SNP	Missense_Mutation	7	4153064	G	A	38	82
BRCA	TCGA-E9-A1NA	HECW1	SNP	Missense_Mutation	7	43546786	G	C	45	100
BRCA	TCGA-E9-A1NA	OC90	SNP	Silent	8	133058114	G	A	48	56
BRCA	TCGA-E9-A1NA	PHF20L1	SNP	Silent	8	133849986	C	T	27	45
BRCA	TCGA-E9-A1NA	OSR2	SNP	Missense_Mutation	8	99961516	C	G	18	60
BRCA	TCGA-E9-A1NA	GRIN3A	SNP	Silent	9	104375772	G	A	39	53
BRCA	TCGA-E9-A1NA	MED22	SNP	Missense_Mutation	9	136212104	C	G	29	88
BRCA	TCGA-E9-A1NA	ASPN	SNP	Missense_Mutation	9	95227293	A	T	3	89
BRCA	TCGA-E9-A1NC	ADCY10	SNP	Missense_Mutation	1	167830215	T	G	58	57
BRCA	TCGA-E9-A1NC	DNM3	SNP	Silent	1	172356293	C	T	23	21
BRCA	TCGA-E9-A1NC	PKP1	SNP	Missense_Mutation	1	201291149	G	A	38	78
BRCA	TCGA-E9-A1NC	ECE1	SNP	Missense_Mutation	1	21551856	C	T	31	80
BRCA	TCGA-E9-A1NC	DFFB	INS	Frame_Shift_Ins	1	3775374	-	T	47	43
BRCA	TCGA-E9-A1NC	DPH2	SNP	Nonsense_Mutation	1	44435938	G	T	39	59
BRCA	TCGA-E9-A1NC	GBP7	SNP	Missense_Mutation	1	89630532	A	T	7	75
BRCA	TCGA-E9-A1NC	EPC1	SNP	Missense_Mutation	10	32576120	G	T	43	99
BRCA	TCGA-E9-A1NC	USP54	SNP	Silent	10	75290088	G	T	43	55
BRCA	TCGA-E9-A1NC	MYOF	SNP	Silent	10	95093659	C	G	30	46
BRCA	TCGA-E9-A1NC	OR10G4	SNP	Missense_Mutation	11	123886720	A	G	6	56
BRCA	TCGA-E9-A1NC	BRSK2	INS	Frame_Shift_Ins	11	1477639	-	G	19	80
BRCA	TCGA-E9-A1NC	OR5M1	SNP	Missense_Mutation	11	56380428	A	G	3	65
BRCA	TCGA-E9-A1NC	OR56A1	SNP	Silent	11	6048395	G	A	45	56
BRCA	TCGA-E9-A1NC	KIAA1731	INS	Frame_Shift_Ins	11	93433116	-	C	34	47
BRCA	TCGA-E9-A1NC	GPR83	SNP	Missense_Mutation	11	94113625	C	T	27	50
BRCA	TCGA-E9-A1NC	KLRC1	SNP	Splice_site	12	10603569	C	A	24	59
BRCA	TCGA-E9-A1NC	METTL20	SNP	Missense_Mutation	12	31820847	G	A	33	72
BRCA	TCGA-E9-A1NC	PDZRN4	SNP	Missense_Mutation	12	41967163	C	A	32	100
BRCA	TCGA-E9-A1NC	LRP1	SNP	Missense_Mutation	12	57574482	G	A	41	96
BRCA	TCGA-E9-A1NC	KIF5A	SNP	Silent	12	57975304	C	T	18	66
BRCA	TCGA-E9-A1NC	BBS10	SNP	Missense_Mutation	12	76740486	C	G	32	57
BRCA	TCGA-E9-A1NC	KERA	SNP	Silent	12	91445255	C	T	25	64
BRCA	TCGA-E9-A1NC	NOVA1	SNP	Missense_Mutation	14	26917796	G	T	46	85
BRCA	TCGA-E9-A1NC	DAAM1	SNP	Missense_Mutation	14	59730208	A	C	1	90
BRCA	TCGA-E9-A1NC	RPS6KA5	SNP	Missense_Mutation	14	91338524	G	C	33	97
BRCA	TCGA-E9-A1NC	PAK6	INS	Frame_Shift_Ins	15	40566446	-	C	34	62
BRCA	TCGA-E9-A1NC	TYRO3	SNP	Splice_Site	15	41862356	T	C	57	86
BRCA	TCGA-E9-A1NC	DUOX2	SNP	Missense_Mutation	15	45387138	A	C	8	91
BRCA	TCGA-E9-A1NC	DMXL2	SNP	Missense_Mutation	15	51791403	G	T	36	71
BRCA	TCGA-E9-A1NC	GOLGA6A	DEL	In_Frame_Del	15	74364612	CCT	-	26	52
BRCA	TCGA-E9-A1NC	C15orf39	INS	Frame_Shift_Ins	15	75499803	-	C	14	62
BRCA	TCGA-E9-A1NC	SHISA9	SNP	Missense_Mutation	16	13329129	C	T	27	78
BRCA	TCGA-E9-A1NC	NUP93	SNP	Missense_Mutation	16	56782199	G	A	45	100
BRCA	TCGA-E9-A1NC	FBXW10	SNP	Missense_Mutation	17	18675985	A	G	3	43
BRCA	TCGA-E9-A1NC	C17orf47	SNP	Silent	17	56620396	G	A	48	54
BRCA	TCGA-E9-A1NC	MED13	SNP	Missense_Mutation	17	60023924	T	C	60	87
BRCA	TCGA-E9-A1NC	TYK2	INS	Frame_Shift_Ins	19	10463112	-	G	59	49
BRCA	TCGA-E9-A1NC	LPHN1	SNP	Splice_site	19	14263249	C	G	18	77
BRCA	TCGA-E9-A1NC	SAE1	SNP	Missense_Mutation	19	47673103	C	T	26	89
BRCA	TCGA-E9-A1NC	SIGLEC7	SNP	Silent	19	51647820	C	A	22	40
BRCA	TCGA-E9-A1NC	CNTNAP5	SNP	Silent	2	125671838	C	T	27	55
BRCA	TCGA-E9-A1NC	SAP130	SNP	Missense_Mutation	2	128712831	C	A	28	68
BRCA	TCGA-E9-A1NC	ZSWIM2	SNP	Missense_Mutation	2	187702201	A	G	5	82
BRCA	TCGA-E9-A1NC	TRIP12	SNP	Missense_Mutation	2	230679028	T	A	55	93
BRCA	TCGA-E9-A1NC	HDAC4	SNP	Silent	2	240066378	G	A	34	82
BRCA	TCGA-E9-A1NC	OXER1	INS	Frame_Shift_Ins	2	42990217	-	C	42	65
BRCA	TCGA-E9-A1NC	GPR75	SNP	Missense_Mutation	2	54081037	C	T	19	68
BRCA	TCGA-E9-A1NC	C2orf65	SNP	Missense_Mutation	2	74802647	C	T	32	57
BRCA	TCGA-E9-A1NC	C21orf58	INS	Frame_Shift_Ins	21	47734733	-	AT	42	61
BRCA	TCGA-E9-A1NC	ATG4A	SNP	Missense_Mutation	23	107374543	C	G	17	97
BRCA	TCGA-E9-A1NC	GATA1	SNP	Missense_Mutation	23	48652249	G	A	38	75
BRCA	TCGA-E9-A1NC	MAGED2	SNP	Silent	23	54836184	G	T	37	43
BRCA	TCGA-E9-A1NC	COLQ	INS	Frame_Shift_Ins	3	15518687	-	G	55	48
BRCA	TCGA-E9-A1NC	BCHE	SNP	Missense_Mutation	3	165548505	C	A	30	100
BRCA	TCGA-E9-A1NC	C3orf32	SNP	Missense_Mutation	3	8672537	T	G	55	73
BRCA	TCGA-E9-A1NC	GALNT7	SNP	Missense_Mutation	4	174169248	T	A	56	63
BRCA	TCGA-E9-A1NC	SIL1	DEL	Frame_Shift_Del	5	138282853	GG	-	47	52
BRCA	TCGA-E9-A1NC	SIL1	INS	Frame_Shift_Ins	5	138282858	-	G	57	79
BRCA	TCGA-E9-A1NC	PLN	SNP	Missense_Mutation	6	118880141	A	C	1	54
BRCA	TCGA-E9-A1NC	MUC17	SNP	Missense_Mutation	7	100684923	C	T	19	29
BRCA	TCGA-E9-A1NC	PRSS58	DEL	Frame_Shift_Del	7	141955075	AGATGCTTTTCATT	-	7	54
BRCA	TCGA-E9-A1NC	SUN1	SNP	Missense_Mutation	7	891092	G	T	42	53
BRCA	TCGA-E9-A1NC	FAM135B	INS	Frame_Shift_Ins	8	139164094	-	C	44	72
BRCA	TCGA-E9-A1NC	TEX15	SNP	Missense_Mutation	8	30705420	G	C	45	48
BRCA	TCGA-E9-A1NC	PRDM14	SNP	Missense_Mutation	8	70964468	C	G	20	58
BRCA	TCGA-E9-A1NC	OTUD6B	SNP	Missense_Mutation	8	92082559	C	T	26	41
BRCA	TCGA-E9-A1ND	CHD1L	SNP	Missense_Mutation	1	146758174	G	C	40	64
BRCA	TCGA-E9-A1ND	DARS2	SNP	Missense_Mutation	1	173826805	T	A	54	53
BRCA	TCGA-E9-A1ND	TNN	SNP	Missense_Mutation	1	175052955	A	C	2	89
BRCA	TCGA-E9-A1ND	KCNT2	SNP	Missense_Mutation	1	196251440	C	A	30	98
BRCA	TCGA-E9-A1ND	RYR2	SNP	Silent	1	237948029	G	A	35	87
BRCA	TCGA-E9-A1ND	TRIT1	SNP	Missense_Mutation	1	40307439	G	C	45	49
BRCA	TCGA-E9-A1ND	OMA1	SNP	Missense_Mutation	1	58999654	C	T	29	93
BRCA	TCGA-E9-A1ND	CHST15	SNP	Missense_Mutation	10	125771954	A	T	7	90
BRCA	TCGA-E9-A1ND	PGR	SNP	Missense_Mutation	11	100922227	C	A	18	70
BRCA	TCGA-E9-A1ND	MUC5B	SNP	Missense_Mutation	11	1266156	G	C	33	56
BRCA	TCGA-E9-A1ND	SPPL3	SNP	Missense_Mutation	12	121222339	G	C	33	100
BRCA	TCGA-E9-A1ND	LYRM5	DEL	Frame_Shift_Del	12	25356905	TTCT	-	52	56
BRCA	TCGA-E9-A1ND	PKP2	SNP	Missense_Mutation	12	32949226	T	C	62	67
BRCA	TCGA-E9-A1ND	ATF1	SNP	Missense_Mutation	12	51207889	C	T	20	64
BRCA	TCGA-E9-A1ND	ZFC3H1	SNP	Silent	12	72009006	A	C	3	51
BRCA	TCGA-E9-A1ND	A2M	SNP	Silent	12	9242989	C	T	26	49
BRCA	TCGA-E9-A1ND	DIAPH3	SNP	Silent	13	60407364	C	T	31	44
BRCA	TCGA-E9-A1ND	CATSPERB	SNP	Silent	14	92047329	C	T	19	39
BRCA	TCGA-E9-A1ND	AGBL1	SNP	Missense_Mutation	15	86940618	T	C	50	91
BRCA	TCGA-E9-A1ND	LONP2	SNP	Missense_Mutation	16	48304031	A	G	5	78
BRCA	TCGA-E9-A1ND	MT1M	SNP	Missense_Mutation	16	56666647	G	A	41	65
BRCA	TCGA-E9-A1ND	ST3GAL2	SNP	Missense_Mutation	16	70432295	G	A	39	61
BRCA	TCGA-E9-A1ND	FBXW10	SNP	Missense_Mutation	17	18670066	G	C	33	63
BRCA	TCGA-E9-A1ND	SLC25A11	SNP	Missense_Mutation	17	4841331	T	C	57	84
BRCA	TCGA-E9-A1ND	KCNJ2	SNP	Missense_Mutation	17	68171571	G	A	42	87
BRCA	TCGA-E9-A1ND	TP53	SNP	Missense_Mutation	17	7578190	T	C	49	88
BRCA	TCGA-E9-A1ND	RPTOR	SNP	Silent	17	78897383	G	A	39	32
BRCA	TCGA-E9-A1ND	RPRD1A	SNP	Missense_Mutation	18	33606996	G	A	38	96
BRCA	TCGA-E9-A1ND	CELF4	SNP	Silent	18	35145386	G	A	33	70
BRCA	TCGA-E9-A1ND	MYO5B	SNP	Missense_Mutation	18	47518741	G	T	47	68
BRCA	TCGA-E9-A1ND	ADCK4	SNP	Silent	19	41209450	G	A	39	11
BRCA	TCGA-E9-A1ND	ZNF274	SNP	Missense_Mutation	19	58698334	G	C	33	53
BRCA	TCGA-E9-A1ND	ZNF121	SNP	Missense_Mutation	19	9677328	C	T	32	49
BRCA	TCGA-E9-A1ND	COBLL1	SNP	Silent	2	165561493	C	T	27	55
BRCA	TCGA-E9-A1ND	ZNF804A	SNP	Silent	2	185803708	G	T	46	59
BRCA	TCGA-E9-A1ND	PMS1	SNP	Nonsense_Mutation	2	190682787	A	T	3	60
BRCA	TCGA-E9-A1ND	TRIP12	INS	Frame_Shift_Ins	2	230661314	-	A	33	81
BRCA	TCGA-E9-A1ND	DGKD	SNP	Silent	2	234359581	G	A	40	7
BRCA	TCGA-E9-A1ND	SEC23B	SNP	Missense_Mutation	20	18507143	G	C	33	98
BRCA	TCGA-E9-A1ND	STK35	SNP	Missense_Mutation	20	2097914	T	G	58	75
BRCA	TCGA-E9-A1ND	DEFB129	SNP	Missense_Mutation	20	210186	G	A	34	38
BRCA	TCGA-E9-A1ND	SEMG2	SNP	Missense_Mutation	20	43851246	A	C	5	57
BRCA	TCGA-E9-A1ND	ZNF335	SNP	Missense_Mutation	20	44598176	A	G	6	64
BRCA	TCGA-E9-A1ND	LRCH2	SNP	Missense_Mutation	23	114414224	G	T	45	78
BRCA	TCGA-E9-A1ND	L1CAM	SNP	Silent	23	153129922	A	G	6	48
BRCA	TCGA-E9-A1ND	IL1RAPL1	SNP	Missense_Mutation	23	29301321	G	A	38	71
BRCA	TCGA-E9-A1ND	AKAP4	SNP	Missense_Mutation	23	49957994	T	A	50	68
BRCA	TCGA-E9-A1ND	OPHN1	SNP	Missense_Mutation	23	67417078	A	G	9	71
BRCA	TCGA-E9-A1ND	HHLA2	SNP	Missense_Mutation	3	108094632	G	T	45	41
BRCA	TCGA-E9-A1ND	SEMA5B	SNP	Silent	3	122630348	G	A	39	52
BRCA	TCGA-E9-A1ND	GOLIM4	SNP	Missense_Mutation	3	167750551	C	G	24	47
BRCA	TCGA-E9-A1ND	NGLY1	SNP	Silent	3	25792650	C	T	23	51
BRCA	TCGA-E9-A1ND	PDCD6IP	SNP	Silent	3	33905540	A	G	5	44
BRCA	TCGA-E9-A1ND	WDR17	SNP	Missense_Mutation	4	177072997	C	G	32	83
BRCA	TCGA-E9-A1ND	UBA6	SNP	Missense_Mutation	4	68494810	C	G	24	52
BRCA	TCGA-E9-A1ND	BET3L	SNP	Missense_Mutation	6	116861558	T	C	53	71
BRCA	TCGA-E9-A1ND	CD109	SNP	Splice_site	6	74466405	G	A	47	63
BRCA	TCGA-E9-A1ND	MUC17	SNP	Missense_Mutation	7	100681604	C	A	30	52
BRCA	TCGA-E9-A1ND	RELN	SNP	Missense_Mutation	7	103214716	G	A	43	95
BRCA	TCGA-E9-A1ND	CHRM2	SNP	Missense_Mutation	7	136700646	A	G	11	79
BRCA	TCGA-E9-A1ND	POM121	SNP	Missense_Mutation	7	72418986	T	A	62	48
BRCA	TCGA-E9-A1ND	PCLO	SNP	Silent	7	82784526	T	C	63	50
BRCA	TCGA-E9-A1ND	TRRAP	SNP	Missense_Mutation	7	98528347	T	C	59	92
BRCA	TCGA-E9-A1ND	ZKSCAN1	SNP	Missense_Mutation	7	99631435	A	G	2	53
BRCA	TCGA-E9-A1ND	GRINA	SNP	Missense_Mutation	8	145066211	T	G	56	63
BRCA	TCGA-E9-A1ND	KIAA1967	SNP	Missense_Mutation	8	22470552	C	T	19	82
BRCA	TCGA-E9-A1NE	SLC16A4	SNP	Missense_Mutation	1	110921957	G	C	34	56
BRCA	TCGA-E9-A1NE	CAMK1G	SNP	Missense_Mutation	1	209784824	C	G	17	96
BRCA	TCGA-E9-A1NE	SYT14	SNP	Missense_Mutation	1	210273640	T	C	60	78
BRCA	TCGA-E9-A1NE	NUP133	SNP	Missense_Mutation	1	229633915	A	G	1	49
BRCA	TCGA-E9-A1NE	ZNF684	SNP	Missense_Mutation	1	41012838	G	T	44	46
BRCA	TCGA-E9-A1NE	CELF2	SNP	Missense_Mutation	10	11330504	T	A	54	86
BRCA	TCGA-E9-A1NE	UPF2	SNP	Missense_Mutation	10	12077114	C	A	32	66
BRCA	TCGA-E9-A1NE	NAP1L4	SNP	Splice_Site	11	2975878	T	A	55	89
BRCA	TCGA-E9-A1NE	FERMT3	SNP	Missense_Mutation	11	63979191	A	C	14	71
BRCA	TCGA-E9-A1NE	ATG2A	SNP	Silent	11	64674264	C	T	24	55
BRCA	TCGA-E9-A1NE	ATG2A	SNP	Splice_Site	11	64674996	C	G	18	88
BRCA	TCGA-E9-A1NE	KCNA5	SNP	Missense_Mutation	12	5155008	G	C	35	49
BRCA	TCGA-E9-A1NE	DACT1	SNP	Missense_Mutation	14	59112414	C	T	21	73
BRCA	TCGA-E9-A1NE	DUOXA2	SNP	Silent	15	45406842	G	A	34	52
BRCA	TCGA-E9-A1NE	KIF7	SNP	Missense_Mutation	15	90173555	G	A	45	100
BRCA	TCGA-E9-A1NE	FAM171A2	SNP	Missense_Mutation	17	42433630	G	C	43	95
BRCA	TCGA-E9-A1NE	CLEC10A	SNP	Splice_Site	17	6980307	C	A	32	65
BRCA	TCGA-E9-A1NE	KIAA1468	SNP	Missense_Mutation	18	59888293	G	T	34	100
BRCA	TCGA-E9-A1NE	PTPRH	SNP	Missense_Mutation	19	55708703	G	C	43	55
BRCA	TCGA-E9-A1NE	MSTN	SNP	Missense_Mutation	2	190924879	G	A	35	100
BRCA	TCGA-E9-A1NE	KCNB1	SNP	Missense_Mutation	20	48098719	C	T	27	100
BRCA	TCGA-E9-A1NE	YPEL1	SNP	Missense_Mutation	22	22064966	C	T	17	99
BRCA	TCGA-E9-A1NE	EFCAB6	SNP	Splice_site	22	44079628	G	C	36	48
BRCA	TCGA-E9-A1NE	TRPC5	SNP	Missense_Mutation	23	111024400	T	A	51	86
BRCA	TCGA-E9-A1NE	DCHS2	SNP	Silent	4	155241643	G	C	35	49
BRCA	TCGA-E9-A1NE	STAP1	SNP	Missense_Mutation	4	68424566	G	C	41	54
BRCA	TCGA-E9-A1NE	ATP10B	SNP	Missense_Mutation	5	160034008	C	T	30	58
BRCA	TCGA-E9-A1NE	ZNF354C	SNP	Missense_Mutation	5	178505799	T	G	61	51
BRCA	TCGA-E9-A1NE	ZNF366	SNP	Missense_Mutation	5	71756905	C	T	27	75
BRCA	TCGA-E9-A1NE	SNX10	SNP	Missense_Mutation	7	26412143	A	G	10	68
BRCA	TCGA-E9-A1NE	TLE1	SNP	Missense_Mutation	9	84202727	T	C	59	93
BRCA	TCGA-E9-A1NF	GPATCH4	INS	In_Frame_Ins	1	156568029	-	CCA	62	83
BRCA	TCGA-E9-A1NF	CD1B	SNP	Missense_Mutation	1	158298045	G	A	45	59
BRCA	TCGA-E9-A1NF	ATP1B1	SNP	Missense_Mutation	1	169094132	G	T	33	54
BRCA	TCGA-E9-A1NF	ARHGEF10L	SNP	Missense_Mutation	1	17975064	C	G	21	86
BRCA	TCGA-E9-A1NF	NUP133	SNP	Missense_Mutation	1	229622242	C	G	18	76
BRCA	TCGA-E9-A1NF	PCNXL2	SNP	Splice_Site	1	233353644	C	T	19	98
BRCA	TCGA-E9-A1NF	FMN2	SNP	Missense_Mutation	1	240370352	C	T	30	86
BRCA	TCGA-E9-A1NF	FMN2	SNP	Missense_Mutation	1	240370552	C	T	30	51
BRCA	TCGA-E9-A1NF	EFCAB7	SNP	Missense_Mutation	1	63999242	G	A	45	72
BRCA	TCGA-E9-A1NF	EFCAB7	SNP	Missense_Mutation	1	64011686	G	C	44	63
BRCA	TCGA-E9-A1NF	HPSE2	INS	Frame_Shift_Ins	10	100219345	-	G	7	88
BRCA	TCGA-E9-A1NF	RECQL	SNP	Missense_Mutation	12	21630747	A	T	15	90
BRCA	TCGA-E9-A1NF	LIG4	SNP	Missense_Mutation	13	108862458	C	T	29	85
BRCA	TCGA-E9-A1NF	NUMB	SNP	Missense_Mutation	14	73753872	T	A	59	92
BRCA	TCGA-E9-A1NF	VPS13C	SNP	Missense_Mutation	15	62277090	G	C	45	65
BRCA	TCGA-E9-A1NF	TSPAN3	SNP	Missense_Mutation	15	77346562	G	T	44	63
BRCA	TCGA-E9-A1NF	SALL1	SNP	Missense_Mutation	16	51174727	C	T	19	99
BRCA	TCGA-E9-A1NF	NCOR1	INS	Frame_Shift_Ins	17	16029456	-	T	48	77
BRCA	TCGA-E9-A1NF	TP53	SNP	Missense_Mutation	17	7579349	A	C	9	71
BRCA	TCGA-E9-A1NF	COL5A3	SNP	Missense_Mutation	19	10097049	G	A	39	48
BRCA	TCGA-E9-A1NF	CALR3	SNP	Missense_Mutation	19	16606648	C	T	31	98
BRCA	TCGA-E9-A1NF	TMPRSS9	SNP	Missense_Mutation	19	2416579	C	T	24	76
BRCA	TCGA-E9-A1NF	TPRX1	SNP	Missense_Mutation	19	48305666	A	C	10	33
BRCA	TCGA-E9-A1NF	TMEM143	SNP	Missense_Mutation	19	48836505	G	T	46	67
BRCA	TCGA-E9-A1NF	MED25	SNP	Silent	19	50335258	C	T	19	44
BRCA	TCGA-E9-A1NF	MYH14	SNP	Missense_Mutation	19	50735219	C	T	23	76
BRCA	TCGA-E9-A1NF	RANBP2	SNP	Missense_Mutation	2	109347330	G	A	45	91
BRCA	TCGA-E9-A1NF	BCL2L11	SNP	Silent	2	111881520	A	C	6	51
BRCA	TCGA-E9-A1NF	EPB41L5	SNP	Silent	2	120903830	T	C	49	57
BRCA	TCGA-E9-A1NF	GTDC1	SNP	Missense_Mutation	2	144710400	C	T	17	92
BRCA	TCGA-E9-A1NF	FASTKD2	SNP	Missense_Mutation	2	207638973	G	A	45	75
BRCA	TCGA-E9-A1NF	CRYGC	SNP	Missense_Mutation	2	208994365	C	T	31	66
BRCA	TCGA-E9-A1NF	SPRED2	SNP	Silent	2	65571979	G	T	47	72
BRCA	TCGA-E9-A1NF	STK35	SNP	Silent	20	2097463	T	C	63	51
BRCA	TCGA-E9-A1NF	NCOA6	SNP	Missense_Mutation	20	33370003	G	C	45	60
BRCA	TCGA-E9-A1NF	C20orf111	SNP	Splice_Site	20	42831600	C	A	18	85
BRCA	TCGA-E9-A1NF	SLCO2A1	SNP	Missense_Mutation	3	133664056	G	A	34	75
BRCA	TCGA-E9-A1NF	MASP1	SNP	Silent	3	186970996	C	T	23	3
BRCA	TCGA-E9-A1NF	CEP19	SNP	Missense_Mutation	3	196434456	C	A	17	96
BRCA	TCGA-E9-A1NF	GCNT4	SNP	Missense_Mutation	5	74325091	G	A	43	58
BRCA	TCGA-E9-A1NF	VCAN	SNP	Nonsense_Mutation	5	82834037	G	T	45	53
BRCA	TCGA-E9-A1NF	ATG5	SNP	Missense_Mutation	6	106649944	G	A	45	60
BRCA	TCGA-E9-A1NF	ADGB	SNP	Silent	6	147049874	C	A	29	61
BRCA	TCGA-E9-A1NF	FAM217A	SNP	Missense_Mutation	6	4069649	C	T	29	64
BRCA	TCGA-E9-A1NF	PLA2G7	SNP	Missense_Mutation	6	46672386	C	T	29	73
BRCA	TCGA-E9-A1NF	PLA2G7	SNP	Silent	6	46678354	C	T	29	52
BRCA	TCGA-E9-A1NF	DST	DEL	Frame_Shift_Del	6	56422155	CAATTGACAAGGGCCCAAG	-	29	100
BRCA	TCGA-E9-A1NF	RAB19	SNP	Missense_Mutation	7	140107556	T	G	62	91
BRCA	TCGA-E9-A1NG	SPTA1	SNP	Splice_site	1	158584095	C	A	30	71
BRCA	TCGA-E9-A1NG	PTPRF	SNP	Silent	1	44063714	C	T	23	48
BRCA	TCGA-E9-A1NG	USP24	SNP	Missense_Mutation	1	55637338	T	C	50	88
BRCA	TCGA-E9-A1NG	SLC44A3	SNP	Silent	1	95311008	C	T	24	68
BRCA	TCGA-E9-A1NG	SETD1B	SNP	Missense_Mutation	12	122242717	G	A	35	60
BRCA	TCGA-E9-A1NG	KRAS	SNP	Missense_Mutation	12	25398284	C	A	18	99
BRCA	TCGA-E9-A1NG	CHD4	SNP	Missense_Mutation	12	6697097	G	A	39	88
BRCA	TCGA-E9-A1NG	MPG	SNP	Missense_Mutation	16	129659	A	C	10	83
BRCA	TCGA-E9-A1NG	KIAA0182	SNP	Missense_Mutation	16	85701854	A	G	4	69
BRCA	TCGA-E9-A1NG	EFCAB5	SNP	Silent	17	28417634	G	A	47	50
BRCA	TCGA-E9-A1NG	SLFN11	SNP	Missense_Mutation	17	33679962	T	G	58	68
BRCA	TCGA-E9-A1NG	ACE	SNP	Missense_Mutation	17	61562349	A	G	10	52
BRCA	TCGA-E9-A1NG	ITGB6	SNP	Missense_Mutation	2	160980373	G	A	46	75
BRCA	TCGA-E9-A1NG	CSRNP3	SNP	Missense_Mutation	2	166535936	C	A	31	45
BRCA	TCGA-E9-A1NG	ACTR1B	DEL	Splice_Site	2	98276015	CCTCACCTGCCCTGACCAGAA	-	22	59
BRCA	TCGA-E9-A1NG	CEP250	SNP	Nonsense_Mutation	20	34057761	G	T	45	82
BRCA	TCGA-E9-A1NG	HEPH	SNP	Missense_Mutation	23	65420445	C	T	26	77
BRCA	TCGA-E9-A1NG	CCDC80	SNP	Missense_Mutation	3	112358410	G	A	38	54
BRCA	TCGA-E9-A1NG	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-E9-A1NG	CNTNAP2	SNP	Silent	7	146536957	G	T	41	48
BRCA	TCGA-E9-A1NG	KIF13B	SNP	Missense_Mutation	8	28989832	G	A	37	65
BRCA	TCGA-E9-A1NG	MAN1B1	SNP	Missense_Mutation	9	139996024	A	C	6	70
BRCA	TCGA-E9-A1NH	CR1	SNP	Missense_Mutation	1	207679281	G	T	46	58
BRCA	TCGA-E9-A1NH	EFCAB2	INS	Frame_Shift_Ins	1	245133623	-	CCTCC	54	49
BRCA	TCGA-E9-A1NH	C1orf146	SNP	Silent	1	92709922	G	C	45	50
BRCA	TCGA-E9-A1NH	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-E9-A1NH	CSTF3	SNP	Missense_Mutation	11	33129459	G	A	44	79
BRCA	TCGA-E9-A1NH	LPXN	SNP	Missense_Mutation	11	58345513	T	C	57	37
BRCA	TCGA-E9-A1NH	PRDM4	SNP	Missense_Mutation	12	108137052	T	C	59	91
BRCA	TCGA-E9-A1NH	TMEM132B	SNP	Missense_Mutation	12	125834300	A	G	9	78
BRCA	TCGA-E9-A1NH	SMARCD1	SNP	Missense_Mutation	12	50480656	A	G	8	91
BRCA	TCGA-E9-A1NH	PCCA	SNP	Silent	13	101167710	C	T	23	37
BRCA	TCGA-E9-A1NH	ABHD13	SNP	Missense_Mutation	13	108882113	G	A	45	100
BRCA	TCGA-E9-A1NH	DHRS2	SNP	Missense_Mutation	14	24114451	A	G	6	49
BRCA	TCGA-E9-A1NH	CBFB	SNP	Missense_Mutation	16	67070564	A	G	4	85
BRCA	TCGA-E9-A1NH	CDK12	SNP	Missense_Mutation	17	37672031	A	G	4	81
BRCA	TCGA-E9-A1NH	ZNF235	SNP	Silent	19	44792859	T	C	56	52
BRCA	TCGA-E9-A1NH	PLIN4	SNP	Silent	19	4512292	C	T	21	36
BRCA	TCGA-E9-A1NH	KIR2DS4	SNP	Silent	19	55344245	C	T	27	49
BRCA	TCGA-E9-A1NH	A1BG	SNP	Missense_Mutation	19	58864366	G	A	39	64
BRCA	TCGA-E9-A1NH	ZC3H6	SNP	Missense_Mutation	2	113088873	G	A	36	72
BRCA	TCGA-E9-A1NH	SLC30A6	SNP	Missense_Mutation	2	32445456	T	G	62	49
BRCA	TCGA-E9-A1NH	WAS	SNP	Nonsense_Mutation	23	48545241	C	T	19	51
BRCA	TCGA-E9-A1NH	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E9-A1NH	IL7R	SNP	Missense_Mutation	5	35873588	A	T	9	63
BRCA	TCGA-E9-A1NH	DNAH8	SNP	Silent	6	38759340	T	C	56	51
BRCA	TCGA-E9-A1NH	ITGB8	SNP	Silent	7	20418798	C	T	19	61
BRCA	TCGA-E9-A1NH	PAPPA	SNP	Nonsense_Mutation	9	119097220	C	T	21	81
BRCA	TCGA-E9-A1NH	DBC1	SNP	Silent	9	121929686	G	A	40	47
BRCA	TCGA-E9-A1NH	TLN1	SNP	Silent	9	35724267	C	T	25	52
BRCA	TCGA-E9-A1NI	PRPF38B	INS	Frame_Shift_Ins	1	109241968	-	G	23	81
BRCA	TCGA-E9-A1NI	GPSM2	INS	Frame_Shift_Ins	1	109466642	-	C	50	70
BRCA	TCGA-E9-A1NI	FAM40A	INS	Frame_Shift_Ins	1	110585774	-	C	54	92
BRCA	TCGA-E9-A1NI	C2CD4D	INS	Frame_Shift_Ins	1	151810572	-	G	23	32
BRCA	TCGA-E9-A1NI	SELP	SNP	Missense_Mutation	1	169564091	A	G	2	50
BRCA	TCGA-E9-A1NI	DHX9	SNP	Missense_Mutation	1	182811768	A	G	4	75
BRCA	TCGA-E9-A1NI	NBL1	INS	Frame_Shift_Ins	1	19981543	-	G	59	82
BRCA	TCGA-E9-A1NI	IGFN1	INS	Frame_Shift_Ins	1	201174401	-	G	11	60
BRCA	TCGA-E9-A1NI	BARHL2	INS	Frame_Shift_Ins	1	91182376	-	G	55	52
BRCA	TCGA-E9-A1NI	PIK3CD	INS	Frame_Shift_Ins	1	9777113	-	CC	46	48
BRCA	TCGA-E9-A1NI	HPS1	INS	Frame_Shift_Ins	10	100189562	-	C	54	56
BRCA	TCGA-E9-A1NI	KAZALD1	SNP	Missense_Mutation	10	102824102	C	G	22	99
BRCA	TCGA-E9-A1NI	ERCC6	INS	Frame_Shift_Ins	10	50690757	-	C	50	45
BRCA	TCGA-E9-A1NI	GATA3	INS	Frame_Shift_Ins	10	8111496	-	GGAG	55	91
BRCA	TCGA-E9-A1NI	MUC2	SNP	Missense_Mutation	11	1092971	C	T	17	52
BRCA	TCGA-E9-A1NI	IGSF9B	INS	Frame_Shift_Ins	11	133815978	-	G	27	38
BRCA	TCGA-E9-A1NI	ART5	INS	Frame_Shift_Ins	11	3660979	-	G	51	68
BRCA	TCGA-E9-A1NI	MYBPC3	SNP	Missense_Mutation	11	47368187	C	T	23	75
BRCA	TCGA-E9-A1NI	LRRC56	INS	Frame_Shift_Ins	11	551227	-	CC	42	53
BRCA	TCGA-E9-A1NI	FOXM1	INS	Frame_Shift_Ins	12	2968087	-	G	3	72
BRCA	TCGA-E9-A1NI	ATP7B	SNP	Silent	13	52511651	C	T	23	34
BRCA	TCGA-E9-A1NI	RPL10L	SNP	Missense_Mutation	14	47120828	T	C	53	60
BRCA	TCGA-E9-A1NI	HN1L	SNP	Missense_Mutation	16	1735531	A	G	13	77
BRCA	TCGA-E9-A1NI	MAP2K4	INS	Frame_Shift_Ins	17	11984789	-	T	28	98
BRCA	TCGA-E9-A1NI	RNMTL1	SNP	Missense_Mutation	17	694866	G	A	40	50
BRCA	TCGA-E9-A1NI	POLR2A	INS	Frame_Shift_Ins	17	7388097	-	C	42	78
BRCA	TCGA-E9-A1NI	ILF3	INS	Frame_Shift_Ins	19	10794365	-	C	6	45
BRCA	TCGA-E9-A1NI	PALM3	SNP	Missense_Mutation	19	14167592	G	T	34	62
BRCA	TCGA-E9-A1NI	ROCK2	SNP	Nonsense_Mutation	2	11355160	A	T	13	87
BRCA	TCGA-E9-A1NI	ASIC4	INS	Frame_Shift_Ins	2	220402687	-	G	59	47
BRCA	TCGA-E9-A1NI	COL4A4	SNP	Missense_Mutation	2	227896715	G	A	41	65
BRCA	TCGA-E9-A1NI	PUS10	SNP	Silent	2	61238927	A	G	9	50
BRCA	TCGA-E9-A1NI	FAM178B	INS	Frame_Shift_Ins	2	97636500	-	C	34	57
BRCA	TCGA-E9-A1NI	ZBED1	SNP	Missense_Mutation	23	2408674	G	T	37	46
BRCA	TCGA-E9-A1NI	KIAA2022	SNP	Silent	23	73963324	C	T	28	52
BRCA	TCGA-E9-A1NI	PCDH19	SNP	Missense_Mutation	23	99662746	G	A	39	54
BRCA	TCGA-E9-A1NI	CAND2	SNP	Missense_Mutation	3	12857414	G	A	40	55
BRCA	TCGA-E9-A1NI	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-E9-A1NI	ARPP21	SNP	Silent	3	35780862	G	A	39	38
BRCA	TCGA-E9-A1NI	CELSR3	INS	Frame_Shift_Ins	3	48689914	-	G	23	45
BRCA	TCGA-E9-A1NI	ANAPC4	SNP	Splice_site	4	25395932	G	T	41	84
BRCA	TCGA-E9-A1NI	PCDHA5	SNP	Missense_Mutation	5	140202792	G	A	46	92
BRCA	TCGA-E9-A1NI	CDHR2	INS	Frame_Shift_Ins	5	176003133	-	C	54	61
BRCA	TCGA-E9-A1NI	TAX1BP1	INS	Frame_Shift_Ins	7	27831635	-	T	48	50
BRCA	TCGA-E9-A1NI	GLI3	INS	Frame_Shift_Ins	7	42004243	-	T	36	77
BRCA	TCGA-E9-A1NI	LIMK1	INS	Frame_Shift_Ins	7	73535322	-	C	46	92
BRCA	TCGA-E9-A1NI	KIF13B	SNP	Silent	8	29003919	G	A	35	56
BRCA	TCGA-E9-A1NI	COL5A1	INS	Splice_site	9	137642389	-	C	42	90
BRCA	TCGA-E9-A1NI	NDOR1	INS	Frame_Shift_Ins	9	140108277	-	G	63	27
BRCA	TCGA-E9-A1QZ	TACR2	SNP	Missense_Mutation	10	71175920	C	T	19	67
BRCA	TCGA-E9-A1QZ	DYRK4	SNP	Missense_Mutation	12	4708239	C	A	29	70
BRCA	TCGA-E9-A1QZ	PHF12	SNP	Missense_Mutation	17	27239625	G	A	48	83
BRCA	TCGA-E9-A1QZ	VPS53	SNP	Silent	17	440372	G	A	40	47
BRCA	TCGA-E9-A1QZ	ASXL3	SNP	Silent	18	31325521	G	A	40	7
BRCA	TCGA-E9-A1QZ	PSG1	SNP	Missense_Mutation	19	43382212	A	G	16	43
BRCA	TCGA-E9-A1QZ	COL4A5	SNP	Missense_Mutation	23	107823802	A	G	12	57
BRCA	TCGA-E9-A1QZ	NCAPG	SNP	Missense_Mutation	4	17819064	A	T	2	57
BRCA	TCGA-E9-A1QZ	C1QTNF3	SNP	Missense_Mutation	5	34024111	C	A	17	76
BRCA	TCGA-E9-A1QZ	PPP1R17	SNP	Missense_Mutation	7	31735165	T	A	51	50
BRCA	TCGA-E9-A1R0	SDF4	SNP	Missense_Mutation	1	1163972	C	T	30	93
BRCA	TCGA-E9-A1R0	PLD5	SNP	Missense_Mutation	1	242383388	C	T	27	89
BRCA	TCGA-E9-A1R0	HIVEP3	SNP	Missense_Mutation	1	42049238	C	T	27	85
BRCA	TCGA-E9-A1R0	ST6GALNAC3	SNP	Missense_Mutation	1	76877751	G	A	42	98
BRCA	TCGA-E9-A1R0	TMPRSS4	SNP	Missense_Mutation	11	117982545	G	A	37	46
BRCA	TCGA-E9-A1R0	COMMD9	SNP	Silent	11	36300038	G	A	41	76
BRCA	TCGA-E9-A1R0	PFKM	SNP	Nonsense_Mutation	12	48538878	G	A	47	99
BRCA	TCGA-E9-A1R0	PZP	SNP	Silent	12	9346694	C	T	23	59
BRCA	TCGA-E9-A1R0	METTL21C	SNP	Missense_Mutation	13	103343304	C	G	32	48
BRCA	TCGA-E9-A1R0	OR4K5	SNP	Silent	14	20389605	C	T	23	40
BRCA	TCGA-E9-A1R0	FLRT2	SNP	Missense_Mutation	14	86088051	G	A	40	74
BRCA	TCGA-E9-A1R0	CTCF	SNP	Missense_Mutation	16	67645418	T	C	64	92
BRCA	TCGA-E9-A1R0	OSBPL1A	SNP	Missense_Mutation	18	21894248	G	A	39	53
BRCA	TCGA-E9-A1R0	CYP4F11	SNP	Missense_Mutation	19	16040359	T	C	49	44
BRCA	TCGA-E9-A1R0	TTN	SNP	Missense_Mutation	2	179615666	C	T	32	74
BRCA	TCGA-E9-A1R0	CTNNA2	SNP	Missense_Mutation	2	80874927	G	A	37	100
BRCA	TCGA-E9-A1R0	DOCK11	SNP	Silent	23	117785950	G	C	45	55
BRCA	TCGA-E9-A1R0	THOC2	SNP	Missense_Mutation	23	122840715	T	A	58	77
BRCA	TCGA-E9-A1R0	STAG2	SNP	Missense_Mutation	23	123181291	G	A	39	99
BRCA	TCGA-E9-A1R0	SLC9A6	SNP	Silent	23	135098842	C	T	32	60
BRCA	TCGA-E9-A1R0	LDOC1	SNP	Missense_Mutation	23	140270877	C	T	21	50
BRCA	TCGA-E9-A1R0	RPL10	SNP	Missense_Mutation	23	153628228	A	C	6	82
BRCA	TCGA-E9-A1R0	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-E9-A1R0	DNAH12	SNP	Missense_Mutation	3	57357142	G	C	33	87
BRCA	TCGA-E9-A1R0	EGR1	SNP	Silent	5	137803326	C	T	31	48
BRCA	TCGA-E9-A1R0	DCBLD1	SNP	Missense_Mutation	6	117861948	G	A	44	60
BRCA	TCGA-E9-A1R0	ST18	SNP	Silent	8	53074080	G	A	45	57
BRCA	TCGA-E9-A1R0	ANKRD20A4	SNP	Missense_Mutation	9	69421983	G	C	48	52
BRCA	TCGA-E9-A1R2	TNFRSF8	SNP	Missense_Mutation	1	12175747	T	A	53	39
BRCA	TCGA-E9-A1R2	AADACL4	SNP	Missense_Mutation	1	12704575	C	T	22	55
BRCA	TCGA-E9-A1R2	PRAMEF10	SNP	Silent	1	12954890	C	T	32	46
BRCA	TCGA-E9-A1R2	NBPF11	SNP	Missense_Mutation	1	146055349	G	A	34	56
BRCA	TCGA-E9-A1R2	RPTN	SNP	Silent	1	152128042	A	G	8	50
BRCA	TCGA-E9-A1R2	INSRR	SNP	Missense_Mutation	1	156812803	T	A	59	86
BRCA	TCGA-E9-A1R2	KIFAP3	SNP	Missense_Mutation	1	170007569	C	T	29	84
BRCA	TCGA-E9-A1R2	ZYG11B	SNP	Silent	1	53267568	T	A	64	51
BRCA	TCGA-E9-A1R2	KIAA1107	SNP	Missense_Mutation	1	92647600	G	C	33	98
BRCA	TCGA-E9-A1R2	ITIH5	SNP	Missense_Mutation	10	7605192	T	A	50	70
BRCA	TCGA-E9-A1R2	ASCL3	DEL	Frame_Shift_Del	11	8959263	AGAAG	-	7	91
BRCA	TCGA-E9-A1R2	TXNRD1	SNP	Missense_Mutation	12	104713335	C	T	22	98
BRCA	TCGA-E9-A1R2	KCNA6	SNP	Missense_Mutation	12	4920003	G	T	44	60
BRCA	TCGA-E9-A1R2	AGAP2	SNP	Missense_Mutation	12	58128453	C	T	22	89
BRCA	TCGA-E9-A1R2	STON2	DEL	In_Frame_Del	14	81743745	GTG	-	48	83
BRCA	TCGA-E9-A1R2	ADAL	SNP	Missense_Mutation	15	43644127	G	C	33	55
BRCA	TCGA-E9-A1R2	FBN1	SNP	Missense_Mutation	15	48766788	T	C	57	70
BRCA	TCGA-E9-A1R2	FLYWCH1	SNP	Missense_Mutation	16	2983148	G	A	37	72
BRCA	TCGA-E9-A1R2	ADCY7	SNP	Missense_Mutation	16	50328657	G	A	38	100
BRCA	TCGA-E9-A1R2	STAC2	DEL	Frame_Shift_Del	17	37369367	CCCGGTC	-	18	56
BRCA	TCGA-E9-A1R2	PTRF	SNP	Nonsense_Mutation	17	40557214	T	A	63	67
BRCA	TCGA-E9-A1R2	LAMA1	SNP	Silent	18	7011427	A	G	3	58
BRCA	TCGA-E9-A1R2	ZNF799	DEL	Frame_Shift_Del	19	12501539	TTCTCTC	-	64	49
BRCA	TCGA-E9-A1R2	ZNF799	DEL	Frame_Shift_Del	19	12501549	TG	-	51	78
BRCA	TCGA-E9-A1R2	WIZ	SNP	Silent	19	15536452	G	C	45	51
BRCA	TCGA-E9-A1R2	SLC5A5	SNP	Silent	19	17988649	C	T	26	54
BRCA	TCGA-E9-A1R2	AKT2	SNP	Nonsense_Mutation	19	40741973	C	T	18	99
BRCA	TCGA-E9-A1R2	PRX	SNP	Silent	19	40902282	G	T	41	31
BRCA	TCGA-E9-A1R2	MPND	SNP	Missense_Mutation	19	4354359	C	A	26	88
BRCA	TCGA-E9-A1R2	MED16	DEL	Frame_Shift_Del	19	875294	TT	-	56	82
BRCA	TCGA-E9-A1R2	ZNF560	SNP	Nonsense_Mutation	19	9577765	G	A	40	51
BRCA	TCGA-E9-A1R2	NEB	SNP	Nonsense_Mutation	2	152580858	C	T	22	98
BRCA	TCGA-E9-A1R2	SLC5A6	SNP	Missense_Mutation	2	27425725	G	C	33	65
BRCA	TCGA-E9-A1R2	SPAST	SNP	Missense_Mutation	2	32361954	G	T	45	97
BRCA	TCGA-E9-A1R2	SSTR4	SNP	Silent	20	23016840	C	T	23	39
BRCA	TCGA-E9-A1R2	TAF4	DEL	Splice_Site	20	60578806	CTGGAT	-	28	53
BRCA	TCGA-E9-A1R2	P2RY8	DEL	Frame_Shift_Del	23	1584682	AGCACGA	-	11	82
BRCA	TCGA-E9-A1R2	MXRA5	SNP	Silent	23	3239601	T	C	55	50
BRCA	TCGA-E9-A1R2	FAM47B	SNP	Nonsense_Mutation	23	34961414	G	T	37	54
BRCA	TCGA-E9-A1R2	RBM3	SNP	Missense_Mutation	23	48434030	T	A	60	64
BRCA	TCGA-E9-A1R2	TFG	SNP	Missense_Mutation	3	100467337	G	T	47	58
BRCA	TCGA-E9-A1R2	PSMD2	SNP	Missense_Mutation	3	184018176	C	G	30	99
BRCA	TCGA-E9-A1R2	EPHA3	SNP	Missense_Mutation	3	89521635	C	G	18	84
BRCA	TCGA-E9-A1R2	EXOSC9	SNP	Missense_Mutation	4	122737590	C	G	21	60
BRCA	TCGA-E9-A1R2	C4orf47	SNP	Missense_Mutation	4	186370764	A	G	3	58
BRCA	TCGA-E9-A1R2	USO1	DEL	Frame_Shift_Del	4	76692017	ACTTCTCTTTTAAAACA	-	14	94
BRCA	TCGA-E9-A1R2	FBXL17	SNP	Missense_Mutation	5	107216824	A	G	6	91
BRCA	TCGA-E9-A1R2	PCDHGA7	SNP	Missense_Mutation	5	140764619	G	A	38	71
BRCA	TCGA-E9-A1R2	GFPT2	SNP	Missense_Mutation	5	179745913	C	T	31	86
BRCA	TCGA-E9-A1R2	ITGA1	SNP	Missense_Mutation	5	52240786	G	C	34	81
BRCA	TCGA-E9-A1R2	VWDE	SNP	Missense_Mutation	7	12391277	T	C	56	64
BRCA	TCGA-E9-A1R2	ASAP1	SNP	Missense_Mutation	8	131226804	G	C	33	82
BRCA	TCGA-E9-A1R2	SBSPON	SNP	Nonsense_Mutation	8	73982160	C	T	21	81
BRCA	TCGA-E9-A1R2	TLR4	SNP	Missense_Mutation	9	120475050	T	C	51	83
BRCA	TCGA-E9-A1R2	TLR4	SNP	Missense_Mutation	9	120475844	G	T	47	62
BRCA	TCGA-E9-A1R2	LCN2	SNP	Silent	9	130913971	C	G	27	62
BRCA	TCGA-E9-A1R2	SH3GLB2	SNP	Silent	9	131772130	G	T	41	49
BRCA	TCGA-E9-A1R2	FAM75A6	SNP	Missense_Mutation	9	43625257	C	T	19	37
BRCA	TCGA-E9-A1R2	GLDC	SNP	Missense_Mutation	9	6605176	C	G	24	63
BRCA	TCGA-E9-A1R3	GBP3	SNP	Missense_Mutation	1	89477458	A	T	6	50
BRCA	TCGA-E9-A1R3	MUC2	SNP	Missense_Mutation	11	1090928	A	C	6	37
BRCA	TCGA-E9-A1R3	OPCML	SNP	Silent	11	132527109	C	A	21	62
BRCA	TCGA-E9-A1R3	RAB21	SNP	Missense_Mutation	12	72149064	T	C	55	87
BRCA	TCGA-E9-A1R3	TRPM1	SNP	Missense_Mutation	15	31338429	G	T	34	96
BRCA	TCGA-E9-A1R3	RHBDF1	SNP	Missense_Mutation	16	109808	C	T	28	71
BRCA	TCGA-E9-A1R3	RBBP6	SNP	Silent	16	24560353	A	G	16	54
BRCA	TCGA-E9-A1R3	DHX40	SNP	Missense_Mutation	17	57652830	C	T	17	96
BRCA	TCGA-E9-A1R3	TSPAN16	SNP	Splice_Site	19	11409546	A	C	15	54
BRCA	TCGA-E9-A1R3	NLRP7	SNP	Missense_Mutation	19	55451000	C	A	19	50
BRCA	TCGA-E9-A1R3	MUC16	SNP	Missense_Mutation	19	9068688	G	A	45	53
BRCA	TCGA-E9-A1R3	RGPD3	SNP	Silent	2	107029550	C	T	23	48
BRCA	TCGA-E9-A1R3	MYO7B	SNP	Missense_Mutation	2	128364902	G	A	38	98
BRCA	TCGA-E9-A1R3	SF3B1	SNP	Missense_Mutation	2	198267481	T	C	61	92
BRCA	TCGA-E9-A1R3	ADAM23	SNP	Splice_Site	2	207406859	G	A	36	84
BRCA	TCGA-E9-A1R3	RBM44	SNP	Missense_Mutation	2	238728887	A	C	11	52
BRCA	TCGA-E9-A1R3	ZNF217	SNP	Silent	20	52192684	G	A	37	30
BRCA	TCGA-E9-A1R3	TPTE	SNP	Missense_Mutation	21	10914388	G	A	41	52
BRCA	TCGA-E9-A1R3	PJA1	SNP	Silent	23	68382137	G	C	34	55
BRCA	TCGA-E9-A1R3	HDAC8	SNP	Nonsense_Mutation	23	71681922	G	A	37	90
BRCA	TCGA-E9-A1R3	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E9-A1R3	DNASE1L3	SNP	Missense_Mutation	3	58178422	G	A	40	52
BRCA	TCGA-E9-A1R3	ELOVL6	SNP	Missense_Mutation	4	111026713	C	G	31	98
BRCA	TCGA-E9-A1R3	TARS	SNP	Missense_Mutation	5	33457372	C	T	19	100
BRCA	TCGA-E9-A1R3	EYA4	SNP	Missense_Mutation	6	133783605	G	T	46	63
BRCA	TCGA-E9-A1R3	C6orf62	DEL	Frame_Shift_Del	6	24709014	CTGT	-	28	81
BRCA	TCGA-E9-A1R3	DAXX	DEL	In_Frame_Del	6	33288577	CTGTAA	-	24	72
BRCA	TCGA-E9-A1R3	FERD3L	INS	Frame_Shift_Ins	7	19184779	-	A	21	48
BRCA	TCGA-E9-A1R3	IKBKAP	SNP	Missense_Mutation	9	111655314	C	G	17	51
BRCA	TCGA-E9-A1R3	ABCA2	SNP	Silent	9	139905720	G	A	45	53
BRCA	TCGA-E9-A1R4	PTPRC	SNP	Missense_Mutation	1	198668702	C	T	29	54
BRCA	TCGA-E9-A1R4	NBL1	SNP	Missense_Mutation	1	19983527	C	T	29	81
BRCA	TCGA-E9-A1R4	KDM5B	SNP	Missense_Mutation	1	202736181	T	C	55	70
BRCA	TCGA-E9-A1R4	CDC42BPA	SNP	Nonsense_Mutation	1	227259959	G	C	45	69
BRCA	TCGA-E9-A1R4	HNRNPR	SNP	Splice_Site	1	23648158	T	C	55	87
BRCA	TCGA-E9-A1R4	AKT3	SNP	Missense_Mutation	1	243828108	C	T	32	100
BRCA	TCGA-E9-A1R4	RHD	SNP	Missense_Mutation	1	25627521	C	G	32	52
BRCA	TCGA-E9-A1R4	TMEM125	SNP	Silent	1	43738486	G	A	38	34
BRCA	TCGA-E9-A1R4	PIP4K2A	SNP	Silent	10	22896829	G	A	41	57
BRCA	TCGA-E9-A1R4	PRTFDC1	SNP	Missense_Mutation	10	25226277	C	A	30	71
BRCA	TCGA-E9-A1R4	OGDHL	SNP	Missense_Mutation	10	50944413	C	T	27	99
BRCA	TCGA-E9-A1R4	TET1	SNP	Missense_Mutation	10	70360776	G	T	34	79
BRCA	TCGA-E9-A1R4	TMPRSS5	SNP	Missense_Mutation	11	113569711	C	T	23	54
BRCA	TCGA-E9-A1R4	PKNOX2	SNP	Missense_Mutation	11	125301095	C	G	30	94
BRCA	TCGA-E9-A1R4	C11orf74	SNP	Missense_Mutation	11	36654963	C	A	20	62
BRCA	TCGA-E9-A1R4	ANO9	SNP	Missense_Mutation	11	418925	C	T	29	49
BRCA	TCGA-E9-A1R4	OR52I2	SNP	Missense_Mutation	11	4608668	G	A	48	93
BRCA	TCGA-E9-A1R4	OR4S1	SNP	Missense_Mutation	11	48328481	C	G	30	63
BRCA	TCGA-E9-A1R4	TCHP	SNP	Silent	12	110341868	G	C	45	54
BRCA	TCGA-E9-A1R4	WDR66	SNP	Missense_Mutation	12	122361793	C	T	30	57
BRCA	TCGA-E9-A1R4	WDR66	INS	Frame_Shift_Ins	12	122361879	-	C	6	40
BRCA	TCGA-E9-A1R4	KNTC1	SNP	Silent	12	123068876	G	C	45	53
BRCA	TCGA-E9-A1R4	XPOT	SNP	Missense_Mutation	12	64815079	T	A	49	91
BRCA	TCGA-E9-A1R4	XPOT	SNP	Silent	12	64815164	G	A	45	47
BRCA	TCGA-E9-A1R4	GNS	SNP	Silent	12	65122796	G	A	48	63
BRCA	TCGA-E9-A1R4	MYCBP2	SNP	Missense_Mutation	13	77663147	C	G	29	54
BRCA	TCGA-E9-A1R4	SCFD1	SNP	Splice_site	14	31188583	G	C	35	82
BRCA	TCGA-E9-A1R4	LTK	SNP	Missense_Mutation	15	41804458	G	A	45	94
BRCA	TCGA-E9-A1R4	SNUPN	SNP	Missense_Mutation	15	75897511	C	T	32	94
BRCA	TCGA-E9-A1R4	VPS33B	SNP	Missense_Mutation	15	91550259	C	G	30	95
BRCA	TCGA-E9-A1R4	BAIAP3	SNP	Silent	16	1392617	C	G	29	57
BRCA	TCGA-E9-A1R4	CRAMP1L	SNP	Nonsense_Mutation	16	1719082	C	T	21	81
BRCA	TCGA-E9-A1R4	OTOA	SNP	Missense_Mutation	16	21726421	C	G	30	66
BRCA	TCGA-E9-A1R4	COG7	SNP	Missense_Mutation	16	23415115	C	T	31	74
BRCA	TCGA-E9-A1R4	MYO18A	SNP	Silent	17	27493080	C	T	21	75
BRCA	TCGA-E9-A1R4	TRPV3	SNP	Missense_Mutation	17	3430193	G	A	37	82
BRCA	TCGA-E9-A1R4	MLX	SNP	Missense_Mutation	17	40722064	G	C	45	100
BRCA	TCGA-E9-A1R4	MYOM1	SNP	Missense_Mutation	18	3187502	C	T	26	97
BRCA	TCGA-E9-A1R4	ST8SIA3	SNP	Silent	18	55027376	T	C	52	59
BRCA	TCGA-E9-A1R4	UBA52	SNP	Missense_Mutation	19	18685883	C	T	29	93
BRCA	TCGA-E9-A1R4	TM6SF2	SNP	Silent	19	19379481	G	T	33	56
BRCA	TCGA-E9-A1R4	TSHZ3	SNP	Silent	19	31767666	G	A	39	41
BRCA	TCGA-E9-A1R4	TGFB1	SNP	Missense_Mutation	19	41858865	C	T	22	66
BRCA	TCGA-E9-A1R4	MYO1F	SNP	Missense_Mutation	19	8587599	C	G	30	80
BRCA	TCGA-E9-A1R4	DPP10	SNP	Missense_Mutation	2	116520181	C	G	29	70
BRCA	TCGA-E9-A1R4	TTN	SNP	Missense_Mutation	2	179458942	C	T	32	100
BRCA	TCGA-E9-A1R4	TTN	SNP	Missense_Mutation	2	179462304	C	T	28	100
BRCA	TCGA-E9-A1R4	TTN	SNP	Missense_Mutation	2	179466175	C	G	29	100
BRCA	TCGA-E9-A1R4	C2orf47	SNP	Silent	2	200826646	C	T	28	47
BRCA	TCGA-E9-A1R4	NBEAL1	SNP	Nonsense_Mutation	2	204058611	G	T	45	66
BRCA	TCGA-E9-A1R4	NRP2	SNP	Missense_Mutation	2	206656994	G	A	45	80
BRCA	TCGA-E9-A1R4	ADAM23	SNP	Silent	2	207482334	C	A	29	73
BRCA	TCGA-E9-A1R4	PTPRN	SNP	Missense_Mutation	2	220164932	C	T	27	56
BRCA	TCGA-E9-A1R4	ECEL1	SNP	Missense_Mutation	2	233349542	G	A	40	83
BRCA	TCGA-E9-A1R4	NRXN1	SNP	Missense_Mutation	2	50149372	C	T	24	77
BRCA	TCGA-E9-A1R4	LBX2	SNP	Silent	2	74725249	C	T	32	68
BRCA	TCGA-E9-A1R4	TFAP2C	SNP	Missense_Mutation	20	55209300	A	C	10	91
BRCA	TCGA-E9-A1R4	DSCAM	SNP	Missense_Mutation	21	41719621	C	G	32	99
BRCA	TCGA-E9-A1R4	DIP2A	SNP	Missense_Mutation	21	47931393	A	G	11	90
BRCA	TCGA-E9-A1R4	GNB1L	SNP	Silent	22	19794230	C	G	31	48
BRCA	TCGA-E9-A1R4	FOXRED2	SNP	Missense_Mutation	22	36897374	C	T	23	84
BRCA	TCGA-E9-A1R4	GUCY2F	SNP	Missense_Mutation	23	108652304	C	T	24	59
BRCA	TCGA-E9-A1R4	RGAG1	SNP	Missense_Mutation	23	109694516	C	T	22	58
BRCA	TCGA-E9-A1R4	DOCK11	SNP	Missense_Mutation	23	117819732	G	A	45	59
BRCA	TCGA-E9-A1R4	ATP11C	SNP	Nonsense_Mutation	23	138880454	G	A	45	97
BRCA	TCGA-E9-A1R4	EIF2S3	SNP	Missense_Mutation	23	24082437	G	A	33	95
BRCA	TCGA-E9-A1R4	SMC1A	SNP	Nonsense_Mutation	23	53436124	C	A	29	96
BRCA	TCGA-E9-A1R4	AR	SNP	Missense_Mutation	23	66863184	C	T	32	93
BRCA	TCGA-E9-A1R4	LPAR4	SNP	Missense_Mutation	23	78010427	A	T	7	53
BRCA	TCGA-E9-A1R4	ITM2A	SNP	Missense_Mutation	23	78619023	T	A	54	59
BRCA	TCGA-E9-A1R4	SLC6A1	SNP	Silent	3	11059539	G	A	45	53
BRCA	TCGA-E9-A1R4	UROC1	SNP	Missense_Mutation	3	126228489	G	T	40	64
BRCA	TCGA-E9-A1R4	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-E9-A1R4	SCN10A	SNP	Missense_Mutation	3	38739417	G	C	37	87
BRCA	TCGA-E9-A1R4	SCN10A	SNP	Missense_Mutation	3	38755528	T	A	62	65
BRCA	TCGA-E9-A1R4	LAMB2	SNP	Missense_Mutation	3	49163484	G	T	33	61
BRCA	TCGA-E9-A1R4	DOCK3	SNP	Silent	3	51101917	G	T	45	72
BRCA	TCGA-E9-A1R4	AGXT2L1	SNP	Silent	4	109670466	C	T	23	38
BRCA	TCGA-E9-A1R4	DCHS2	SNP	Silent	4	155254228	G	A	38	11
BRCA	TCGA-E9-A1R4	VEGFC	SNP	Silent	4	177650829	G	T	33	51
BRCA	TCGA-E9-A1R4	MYL5	SNP	Missense_Mutation	4	672772	G	C	37	59
BRCA	TCGA-E9-A1R4	PKD2	SNP	Missense_Mutation	4	88987028	G	C	33	79
BRCA	TCGA-E9-A1R4	SLC22A4	SNP	Silent	5	131676322	C	A	29	48
BRCA	TCGA-E9-A1R4	OR2V1	SNP	Missense_Mutation	5	180551426	C	G	29	50
BRCA	TCGA-E9-A1R4	GNB2L1	SNP	Silent	5	180666577	C	T	32	54
BRCA	TCGA-E9-A1R4	LIFR	SNP	Nonsense_Mutation	5	38504178	G	C	45	83
BRCA	TCGA-E9-A1R4	MAP1B	SNP	Silent	5	71499538	G	A	45	83
BRCA	TCGA-E9-A1R4	FUCA2	SNP	Missense_Mutation	6	143828431	C	T	32	74
BRCA	TCGA-E9-A1R4	ZNF391	SNP	Silent	6	27369106	C	A	22	47
BRCA	TCGA-E9-A1R4	ETV7	SNP	Nonsense_Mutation	6	36343650	G	C	45	91
BRCA	TCGA-E9-A1R4	KIAA0240	SNP	Missense_Mutation	6	42797254	C	A	29	71
BRCA	TCGA-E9-A1R4	RPP40	SNP	Missense_Mutation	6	5002461	C	G	29	84
BRCA	TCGA-E9-A1R4	IQUB	SNP	Nonsense_Mutation	7	123097473	C	A	29	96
BRCA	TCGA-E9-A1R4	EFR3A	SNP	Missense_Mutation	8	133023110	G	C	45	97
BRCA	TCGA-E9-A1R4	GPT	SNP	Missense_Mutation	8	145729709	C	T	23	60
BRCA	TCGA-E9-A1R4	ENTPD4	SNP	Missense_Mutation	8	23299120	C	T	31	95
BRCA	TCGA-E9-A1R4	SULF1	SNP	Missense_Mutation	8	70498615	G	A	45	100
BRCA	TCGA-E9-A1R4	NR4A3	SNP	Missense_Mutation	9	102595783	A	G	16	37
BRCA	TCGA-E9-A1R4	SVEP1	SNP	Missense_Mutation	9	113173528	C	A	21	100
BRCA	TCGA-E9-A1R4	FKBP15	SNP	Nonsense_Mutation	9	115932000	G	A	45	59
BRCA	TCGA-E9-A1R5	FAM63A	SNP	Missense_Mutation	1	150969810	C	T	30	78
BRCA	TCGA-E9-A1R5	GLUL	SNP	Nonsense_Mutation	1	182355487	G	A	47	74
BRCA	TCGA-E9-A1R5	LHX9	SNP	Silent	1	197890707	C	T	19	46
BRCA	TCGA-E9-A1R5	ENAH	SNP	Missense_Mutation	1	225702347	G	A	36	87
BRCA	TCGA-E9-A1R5	KDELC2	SNP	Missense_Mutation	11	108361856	G	T	44	55
BRCA	TCGA-E9-A1R5	OR4C13	SNP	Missense_Mutation	11	49974275	G	A	47	53
BRCA	TCGA-E9-A1R5	RNF41	SNP	Nonsense_Mutation	12	56607765	C	A	21	100
BRCA	TCGA-E9-A1R5	SLC2A3	SNP	Silent	12	8086481	T	G	49	61
BRCA	TCGA-E9-A1R5	ABCD4	SNP	Splice_Site	14	74758989	C	T	19	91
BRCA	TCGA-E9-A1R5	MKRN3	SNP	Missense_Mutation	15	23812334	C	T	31	50
BRCA	TCGA-E9-A1R5	MPI	SNP	Missense_Mutation	15	75190052	G	A	40	99
BRCA	TCGA-E9-A1R5	CLCN7	SNP	Silent	16	1497552	G	T	47	50
BRCA	TCGA-E9-A1R5	MYH2	SNP	Silent	17	10432037	A	G	15	42
BRCA	TCGA-E9-A1R5	CCDC144A	SNP	Missense_Mutation	17	16638041	A	T	8	50
BRCA	TCGA-E9-A1R5	ERBB2	SNP	Missense_Mutation	17	37880261	G	T	33	98
BRCA	TCGA-E9-A1R5	MED13	SNP	Nonsense_Mutation	17	60088032	T	A	62	75
BRCA	TCGA-E9-A1R5	ZNF439	SNP	Missense_Mutation	19	11979122	A	T	3	51
BRCA	TCGA-E9-A1R5	ATCAY	SNP	Missense_Mutation	19	3907867	G	A	40	94
BRCA	TCGA-E9-A1R5	PEG3	SNP	Missense_Mutation	19	57325512	A	G	4	45
BRCA	TCGA-E9-A1R5	NDUFA7	SNP	Silent	19	8381508	G	A	41	52
BRCA	TCGA-E9-A1R5	RBL1	SNP	Missense_Mutation	20	35627233	C	A	19	57
BRCA	TCGA-E9-A1R5	CSTF1	SNP	Silent	20	54974292	C	T	19	39
BRCA	TCGA-E9-A1R5	RUNX1	DEL	Frame_Shift_Del	21	36171700	CCAGGTATTGGTAGGA	-	22	74
BRCA	TCGA-E9-A1R5	DMD	SNP	Nonsense_Mutation	23	31792301	G	A	45	63
BRCA	TCGA-E9-A1R5	PLXNA1	SNP	Silent	3	126736504	C	T	29	73
BRCA	TCGA-E9-A1R5	DNAJC13	INS	In_Frame_Ins	3	132213003	-	CTT	33	100
BRCA	TCGA-E9-A1R5	PIK3CA	SNP	Missense_Mutation	3	178927980	T	C	55	89
BRCA	TCGA-E9-A1R5	BSN	SNP	Missense_Mutation	3	49689363	C	T	27	53
BRCA	TCGA-E9-A1R5	TRIM36	SNP	Missense_Mutation	5	114482989	C	T	31	98
BRCA	TCGA-E9-A1R5	ZFPM2	SNP	Missense_Mutation	8	106815386	G	A	46	69
BRCA	TCGA-E9-A1R5	KIAA0146	SNP	Missense_Mutation	8	48647918	G	C	48	78
BRCA	TCGA-E9-A1R5	PI15	SNP	Missense_Mutation	8	75761435	G	C	45	66
BRCA	TCGA-E9-A1R5	SPTAN1	SNP	Missense_Mutation	9	131371190	A	C	7	91
BRCA	TCGA-E9-A1R5	PIGO	DEL	Frame_Shift_Del	9	35095358	GCGAAAA	-	38	56
BRCA	TCGA-E9-A1R5	MELK	SNP	Missense_Mutation	9	36594707	A	G	7	94
BRCA	TCGA-E9-A1R5	HSD17B3	SNP	Silent	9	99064321	C	T	31	49
BRCA	TCGA-E9-A1R6	CDC14A	SNP	Nonsense_Mutation	1	100960455	C	T	17	74
BRCA	TCGA-E9-A1R6	OR2T35	INS	Frame_Shift_Ins	1	248801953	-	T	7	54
BRCA	TCGA-E9-A1R6	TTLL7	SNP	Missense_Mutation	1	84385515	C	T	31	97
BRCA	TCGA-E9-A1R6	LRRC8C	SNP	Missense_Mutation	1	90179621	G	A	40	86
BRCA	TCGA-E9-A1R6	KCNA4	SNP	Silent	11	30033317	G	T	47	52
BRCA	TCGA-E9-A1R6	NAALADL1	SNP	Missense_Mutation	11	64822123	C	T	31	55
BRCA	TCGA-E9-A1R6	KIAA1731	SNP	Missense_Mutation	11	93463081	C	T	32	42
BRCA	TCGA-E9-A1R6	CD4	SNP	Missense_Mutation	12	6926405	G	T	33	50
BRCA	TCGA-E9-A1R6	INTS6	SNP	Missense_Mutation	13	51961567	C	A	26	97
BRCA	TCGA-E9-A1R6	AP1G2	SNP	Missense_Mutation	14	24028968	G	A	37	89
BRCA	TCGA-E9-A1R6	RYR3	SNP	Silent	15	33944994	C	T	19	50
BRCA	TCGA-E9-A1R6	DHRS7C	SNP	Missense_Mutation	17	9674897	C	A	27	94
BRCA	TCGA-E9-A1R6	ZNF440	SNP	Silent	19	11942981	C	T	19	52
BRCA	TCGA-E9-A1R6	FMNL2	SNP	Missense_Mutation	2	153417524	C	T	23	95
BRCA	TCGA-E9-A1R6	PTMA	DEL	In_Frame_Del	2	232576068	AGA	-	11	82
BRCA	TCGA-E9-A1R6	KIF1A	SNP	Missense_Mutation	2	241708612	C	T	26	96
BRCA	TCGA-E9-A1R6	ATP1B4	SNP	Missense_Mutation	23	119496076	G	A	38	51
BRCA	TCGA-E9-A1R6	PLXNA3	SNP	Missense_Mutation	23	153694159	G	A	42	64
BRCA	TCGA-E9-A1R6	TFE3	SNP	Silent	23	48895568	G	A	39	23
BRCA	TCGA-E9-A1R6	CACNA1F	SNP	Silent	23	49083475	G	A	39	38
BRCA	TCGA-E9-A1R6	TRIML1	SNP	Missense_Mutation	4	189068024	C	T	31	91
BRCA	TCGA-E9-A1R6	GK2	SNP	Missense_Mutation	4	80327715	C	G	32	67
BRCA	TCGA-E9-A1R6	MAP3K1	INS	Frame_Shift_Ins	5	56171058	-	A	41	94
BRCA	TCGA-E9-A1R6	MAP3K1	DEL	Frame_Shift_Del	5	56177011	ATAG	-	16	62
BRCA	TCGA-E9-A1R6	KIAA0408	SNP	Missense_Mutation	6	127767979	C	A	30	72
BRCA	TCGA-E9-A1R6	MED23	SNP	Missense_Mutation	6	131925359	A	T	10	79
BRCA	TCGA-E9-A1R6	ZNF800	SNP	Silent	7	127014790	T	C	55	50
BRCA	TCGA-E9-A1R6	CNBD1	SNP	Silent	8	88365983	G	A	33	51
BRCA	TCGA-E9-A1R7	TAF13	SNP	Missense_Mutation	1	109617632	C	A	32	79
BRCA	TCGA-E9-A1R7	PVRL4	SNP	Missense_Mutation	1	161059016	G	A	45	71
BRCA	TCGA-E9-A1R7	UBR4	SNP	Silent	1	19439335	C	T	17	53
BRCA	TCGA-E9-A1R7	ATP2B4	SNP	Missense_Mutation	1	203680228	C	T	27	74
BRCA	TCGA-E9-A1R7	KCTD3	SNP	Nonsense_Mutation	1	215768802	C	T	29	100
BRCA	TCGA-E9-A1R7	MARC2	SNP	Silent	1	220953546	C	T	29	55
BRCA	TCGA-E9-A1R7	CNIH4	SNP	Missense_Mutation	1	224566784	C	T	22	50
BRCA	TCGA-E9-A1R7	AHCTF1	SNP	Missense_Mutation	1	247007193	T	G	53	50
BRCA	TCGA-E9-A1R7	JAK1	SNP	Missense_Mutation	1	65335075	C	T	17	97
BRCA	TCGA-E9-A1R7	NRP1	SNP	Missense_Mutation	10	33469188	G	A	42	85
BRCA	TCGA-E9-A1R7	GATA3	INS	Frame_Shift_Ins	10	8115941	-	T	24	54
BRCA	TCGA-E9-A1R7	MUC5B	SNP	Missense_Mutation	11	1266479	G	T	43	50
BRCA	TCGA-E9-A1R7	EXT2	SNP	Missense_Mutation	11	44219400	C	T	30	100
BRCA	TCGA-E9-A1R7	PHRF1	SNP	Silent	11	605238	G	A	39	47
BRCA	TCGA-E9-A1R7	OR2AG1	SNP	Missense_Mutation	11	6806874	G	A	47	58
BRCA	TCGA-E9-A1R7	ANO4	SNP	Silent	12	101490420	C	T	31	40
BRCA	TCGA-E9-A1R7	TEP1	SNP	Missense_Mutation	14	20876196	G	C	45	54
BRCA	TCGA-E9-A1R7	NFATC4	SNP	Silent	14	24836347	A	C	6	39
BRCA	TCGA-E9-A1R7	MKRN3	SNP	Missense_Mutation	15	23811660	G	A	46	93
BRCA	TCGA-E9-A1R7	CASC4	SNP	Missense_Mutation	15	44615184	T	A	50	80
BRCA	TCGA-E9-A1R7	ACAN	SNP	Nonsense_Mutation	15	89388987	G	T	45	42
BRCA	TCGA-E9-A1R7	PRKCB	SNP	Silent	16	24135281	G	A	47	54
BRCA	TCGA-E9-A1R7	ITGAL	SNP	Silent	16	30515580	A	C	3	44
BRCA	TCGA-E9-A1R7	SALL1	SNP	Silent	16	51175500	G	T	43	60
BRCA	TCGA-E9-A1R7	MYH8	SNP	Splice_site	17	10298758	C	G	26	96
BRCA	TCGA-E9-A1R7	STAT3	SNP	Missense_Mutation	17	40497585	C	T	25	83
BRCA	TCGA-E9-A1R7	CEP112	SNP	Silent	17	63898300	T	C	64	58
BRCA	TCGA-E9-A1R7	RPTOR	SNP	Silent	17	78704422	G	T	37	49
BRCA	TCGA-E9-A1R7	PHLPP1	SNP	Missense_Mutation	18	60563042	T	G	56	55
BRCA	TCGA-E9-A1R7	FCGBP	SNP	Missense_Mutation	19	40373992	C	G	22	54
BRCA	TCGA-E9-A1R7	GSK3A	SNP	Missense_Mutation	19	42738739	T	C	58	86
BRCA	TCGA-E9-A1R7	INO80D	SNP	Missense_Mutation	2	206869432	G	T	41	99
BRCA	TCGA-E9-A1R7	UNC80	SNP	Missense_Mutation	2	210841715	A	G	8	92
BRCA	TCGA-E9-A1R7	IQCA1	SNP	Splice_site	2	237240002	C	T	24	73
BRCA	TCGA-E9-A1R7	TPRKB	SNP	Missense_Mutation	2	73957812	G	C	33	58
BRCA	TCGA-E9-A1R7	TMEM131	SNP	Missense_Mutation	2	98422132	T	C	52	67
BRCA	TCGA-E9-A1R7	SIGLEC1	SNP	Missense_Mutation	20	3682202	G	T	42	81
BRCA	TCGA-E9-A1R7	STXBP5L	SNP	Missense_Mutation	3	121137241	C	T	21	79
BRCA	TCGA-E9-A1R7	MASP1	SNP	Missense_Mutation	3	186953750	G	A	39	86
BRCA	TCGA-E9-A1R7	MUC4	SNP	Silent	3	195507762	T	G	55	50
BRCA	TCGA-E9-A1R7	ZNF330	SNP	Missense_Mutation	4	142150807	C	A	18	100
BRCA	TCGA-E9-A1R7	PJA2	SNP	Missense_Mutation	5	108714080	C	T	32	60
BRCA	TCGA-E9-A1R7	WWC1	SNP	Missense_Mutation	5	167798457	T	A	55	92
BRCA	TCGA-E9-A1R7	IL7R	SNP	Missense_Mutation	5	35874629	T	C	59	58
BRCA	TCGA-E9-A1R7	HIST1H2AH	SNP	Missense_Mutation	6	27115041	G	A	41	91
BRCA	TCGA-E9-A1R7	SLC35B3	SNP	Silent	6	8417217	C	T	30	60
BRCA	TCGA-E9-A1R7	PEX1	SNP	Missense_Mutation	7	92119083	T	C	50	79
BRCA	TCGA-E9-A1R7	AGPAT6	SNP	Missense_Mutation	8	41467297	G	A	39	97
BRCA	TCGA-E9-A1R7	RP1	SNP	Nonsense_Mutation	8	55540310	C	T	29	54
BRCA	TCGA-E9-A1R7	SDC2	SNP	Missense_Mutation	8	97605791	C	A	19	37
BRCA	TCGA-E9-A1R7	RGS3	SNP	Missense_Mutation	9	116224016	A	G	4	46
BRCA	TCGA-E9-A1R7	ORM2	SNP	Silent	9	117092487	G	A	34	52
BRCA	TCGA-E9-A1R7	PRSS3	SNP	Missense_Mutation	9	33797959	C	G	29	62
BRCA	TCGA-E9-A1R7	TRPM3	SNP	Silent	9	73152123	C	T	23	11
BRCA	TCGA-E9-A1RA	NTPCR	SNP	Silent	1	233092096	A	G	15	48
BRCA	TCGA-E9-A1RA	LRRC7	SNP	Missense_Mutation	1	70397248	G	A	45	79
BRCA	TCGA-E9-A1RA	GATA3	INS	Frame_Shift_Ins	10	8111543	-	TACTGAA	32	43
BRCA	TCGA-E9-A1RA	LRRC10	SNP	Silent	12	70004328	C	T	29	57
BRCA	TCGA-E9-A1RA	NEK3	SNP	Missense_Mutation	13	52725510	C	A	32	54
BRCA	TCGA-E9-A1RA	TMC7	SNP	Missense_Mutation	16	19070770	G	A	41	86
BRCA	TCGA-E9-A1RA	PPL	SNP	Missense_Mutation	16	4933762	C	T	31	100
BRCA	TCGA-E9-A1RA	CLEC18C	SNP	Missense_Mutation	16	70211379	C	T	19	80
BRCA	TCGA-E9-A1RA	PRKAR1A	DEL	Frame_Shift_Del	17	66511555	TACCGCC	-	57	51
BRCA	TCGA-E9-A1RA	NEURL4	SNP	Missense_Mutation	17	7227242	G	A	38	84
BRCA	TCGA-E9-A1RA	OR7C2	SNP	Silent	19	15053236	G	A	35	36
BRCA	TCGA-E9-A1RA	NLRP5	SNP	Silent	19	56565031	G	A	40	29
BRCA	TCGA-E9-A1RA	CCDC74A	SNP	Silent	2	132288159	C	T	24	52
BRCA	TCGA-E9-A1RA	KIF16B	SNP	Missense_Mutation	20	16488613	T	C	56	93
BRCA	TCGA-E9-A1RA	GRAMD4	SNP	Silent	22	47070636	C	T	19	50
BRCA	TCGA-E9-A1RA	DMD	SNP	Missense_Mutation	23	32613970	T	G	56	49
BRCA	TCGA-E9-A1RA	CCDC14	SNP	Missense_Mutation	3	123663791	T	C	49	67
BRCA	TCGA-E9-A1RA	LEKR1	SNP	Missense_Mutation	3	156710975	A	G	11	58
BRCA	TCGA-E9-A1RA	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-E9-A1RA	GLT8D1	SNP	Silent	3	52729291	A	C	7	50
BRCA	TCGA-E9-A1RA	GRM6	SNP	Silent	5	178408703	C	T	23	36
BRCA	TCGA-E9-A1RA	WBSCR17	SNP	Silent	7	71175847	G	T	42	48
BRCA	TCGA-E9-A1RA	PTK2	SNP	Missense_Mutation	8	141749152	C	A	31	99
BRCA	TCGA-E9-A1RB	NBPF11	SNP	Missense_Mutation	1	146055394	A	G	2	56
BRCA	TCGA-E9-A1RB	CFH	SNP	Missense_Mutation	1	196711113	A	G	14	63
BRCA	TCGA-E9-A1RB	ZNF281	SNP	Missense_Mutation	1	200378052	T	C	51	90
BRCA	TCGA-E9-A1RB	LCK	SNP	Missense_Mutation	1	32745462	C	A	29	78
BRCA	TCGA-E9-A1RB	ANK3	SNP	Missense_Mutation	10	61959967	G	A	46	100
BRCA	TCGA-E9-A1RB	NAT10	SNP	Silent	11	34160963	C	T	24	54
BRCA	TCGA-E9-A1RB	ADRBK1	SNP	Missense_Mutation	11	67050279	C	T	19	94
BRCA	TCGA-E9-A1RB	RNF113B	SNP	Missense_Mutation	13	98828595	C	A	26	78
BRCA	TCGA-E9-A1RB	OR4E2	SNP	Silent	14	22133650	G	T	47	97
BRCA	TCGA-E9-A1RB	VWA3A	SNP	Silent	16	22142969	G	A	47	49
BRCA	TCGA-E9-A1RB	PRSS8	SNP	Silent	16	31144597	G	T	34	42
BRCA	TCGA-E9-A1RB	PIGQ	SNP	Missense_Mutation	16	624165	G	A	40	82
BRCA	TCGA-E9-A1RB	STAT5A	SNP	Silent	17	40456393	C	T	27	50
BRCA	TCGA-E9-A1RB	LPO	SNP	Silent	17	56344804	G	A	36	53
BRCA	TCGA-E9-A1RB	TP53	SNP	Missense_Mutation	17	7577082	C	G	30	80
BRCA	TCGA-E9-A1RB	TMEM200C	SNP	Missense_Mutation	18	5891633	A	G	11	57
BRCA	TCGA-E9-A1RB	CNDP2	SNP	Missense_Mutation	18	72173106	C	T	23	99
BRCA	TCGA-E9-A1RB	KIR3DL1	SNP	Splice_Site	19	55341436	G	A	44	55
BRCA	TCGA-E9-A1RB	C3	SNP	Missense_Mutation	19	6694484	C	G	23	68
BRCA	TCGA-E9-A1RB	BAZ2B	SNP	Missense_Mutation	2	160304785	G	A	37	90
BRCA	TCGA-E9-A1RB	WIPF1	SNP	Silent	2	175436606	C	T	27	31
BRCA	TCGA-E9-A1RB	LOXL3	SNP	Missense_Mutation	2	74761688	C	T	27	95
BRCA	TCGA-E9-A1RB	PTPRT	SNP	Missense_Mutation	20	41420080	C	T	21	100
BRCA	TCGA-E9-A1RB	KRTAP19-7	DEL	Frame_Shift_Del	21	31933504	CA	-	21	60
BRCA	TCGA-E9-A1RB	SMARCA1	SNP	Missense_Mutation	23	128649967	G	A	39	98
BRCA	TCGA-E9-A1RB	SEMA6A	SNP	Missense_Mutation	5	115783352	C	G	18	63
BRCA	TCGA-E9-A1RB	HIP1	SNP	Missense_Mutation	7	75182834	G	T	41	60
BRCA	TCGA-E9-A1RC	FLG	SNP	Missense_Mutation	1	152280087	C	G	20	27
BRCA	TCGA-E9-A1RC	FMO3	SNP	Silent	1	171086558	C	T	31	60
BRCA	TCGA-E9-A1RC	TLR5	SNP	Missense_Mutation	1	223285350	T	G	63	78
BRCA	TCGA-E9-A1RC	MACF1	SNP	Missense_Mutation	1	39797089	A	G	7	71
BRCA	TCGA-E9-A1RC	FOXJ3	SNP	Missense_Mutation	1	42657000	G	C	43	88
BRCA	TCGA-E9-A1RC	GATA3	DEL	Frame_Shift_Del	10	8115719	TA	-	53	50
BRCA	TCGA-E9-A1RC	OR51E1	SNP	Missense_Mutation	11	4674561	C	T	27	52
BRCA	TCGA-E9-A1RC	OR5L2	SNP	Missense_Mutation	11	55595368	T	A	50	62
BRCA	TCGA-E9-A1RC	CIT	SNP	Missense_Mutation	12	120128239	G	A	47	100
BRCA	TCGA-E9-A1RC	SLCO1B3	SNP	Missense_Mutation	12	21028243	T	C	52	30
BRCA	TCGA-E9-A1RC	CALCOCO1	SNP	Silent	12	54110179	T	C	60	51
BRCA	TCGA-E9-A1RC	RB1	SNP	Nonsense_Mutation	13	48953760	C	T	23	71
BRCA	TCGA-E9-A1RC	SLC22A17	SNP	Missense_Mutation	14	23818534	C	A	31	72
BRCA	TCGA-E9-A1RC	LRFN5	SNP	Missense_Mutation	14	42360748	C	T	17	81
BRCA	TCGA-E9-A1RC	PTGR2	SNP	Silent	14	74340785	A	G	3	54
BRCA	TCGA-E9-A1RC	ZNF710	SNP	Missense_Mutation	15	90611283	C	T	19	97
BRCA	TCGA-E9-A1RC	KAT8	SNP	Missense_Mutation	16	31138663	C	G	23	72
BRCA	TCGA-E9-A1RC	NUTF2	SNP	Silent	16	67902251	G	A	40	48
BRCA	TCGA-E9-A1RC	GIP	SNP	Missense_Mutation	17	47038347	G	A	41	57
BRCA	TCGA-E9-A1RC	NOL11	SNP	Splice_site	17	65714064	A	C	4	79
BRCA	TCGA-E9-A1RC	TBCD	SNP	Missense_Mutation	17	80730364	G	T	34	87
BRCA	TCGA-E9-A1RC	OR10H5	SNP	Silent	19	15904918	C	T	30	59
BRCA	TCGA-E9-A1RC	ZNF555	SNP	Missense_Mutation	19	2852514	G	T	36	55
BRCA	TCGA-E9-A1RC	TTN	SNP	Missense_Mutation	2	179458370	G	A	39	62
BRCA	TCGA-E9-A1RC	TTN	SNP	Missense_Mutation	2	179536934	T	C	62	58
BRCA	TCGA-E9-A1RC	SLC40A1	SNP	Nonsense_Mutation	2	190437615	A	C	13	77
BRCA	TCGA-E9-A1RC	ZAP70	SNP	Missense_Mutation	2	98354503	C	T	27	72
BRCA	TCGA-E9-A1RC	COMMD7	SNP	Missense_Mutation	20	31315732	C	T	28	62
BRCA	TCGA-E9-A1RC	DOK5	SNP	Missense_Mutation	20	53208301	C	T	27	65
BRCA	TCGA-E9-A1RC	CELSR1	SNP	Silent	22	46763749	G	T	43	57
BRCA	TCGA-E9-A1RC	ELF4	SNP	Silent	23	129203349	G	A	40	38
BRCA	TCGA-E9-A1RC	BGN	SNP	Silent	23	152770766	C	T	23	12
BRCA	TCGA-E9-A1RC	CNKSR2	SNP	Missense_Mutation	23	21450902	C	A	25	81
BRCA	TCGA-E9-A1RC	PHC3	SNP	Silent	3	169889120	T	C	61	48
BRCA	TCGA-E9-A1RC	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E9-A1RC	MUC20	SNP	Missense_Mutation	3	195460039	G	A	38	35
BRCA	TCGA-E9-A1RC	MUC4	SNP	Silent	3	195505944	C	T	17	33
BRCA	TCGA-E9-A1RC	MUC4	SNP	Missense_Mutation	3	195515052	G	C	40	44
BRCA	TCGA-E9-A1RC	PRKCD	SNP	Splice_Site	3	53223073	G	C	33	99
BRCA	TCGA-E9-A1RC	TLR3	SNP	Missense_Mutation	4	187004668	G	C	44	50
BRCA	TCGA-E9-A1RC	BMPR1B	SNP	Missense_Mutation	4	96052464	T	C	58	81
BRCA	TCGA-E9-A1RC	TRPC7	SNP	Missense_Mutation	5	135651308	C	T	27	100
BRCA	TCGA-E9-A1RC	MDC1	SNP	Missense_Mutation	6	30671982	G	A	33	54
BRCA	TCGA-E9-A1RC	FAM135B	SNP	Nonsense_Mutation	8	139164077	T	A	64	50
BRCA	TCGA-E9-A1RC	XPO7	SNP	Missense_Mutation	8	21837630	A	T	9	57
BRCA	TCGA-E9-A1RC	MED22	SNP	Missense_Mutation	9	136211091	C	T	27	77
BRCA	TCGA-E9-A1RD	IQCC	SNP	Missense_Mutation	1	32673075	C	G	17	54
BRCA	TCGA-E9-A1RD	MBD6	SNP	Splice_Site	12	57921444	G	C	44	77
BRCA	TCGA-E9-A1RD	ZFP106	SNP	Missense_Mutation	15	42713309	C	A	21	100
BRCA	TCGA-E9-A1RD	GOLGA6A	SNP	Missense_Mutation	15	74364639	G	C	48	31
BRCA	TCGA-E9-A1RD	TBC1D3	SNP	Silent	17	36340138	A	G	2	57
BRCA	TCGA-E9-A1RD	TOP2A	SNP	Missense_Mutation	17	38556618	T	C	54	92
BRCA	TCGA-E9-A1RD	ABCA6	SNP	Silent	17	67081186	C	T	31	46
BRCA	TCGA-E9-A1RD	KCNJ14	SNP	Silent	19	48967593	C	T	23	17
BRCA	TCGA-E9-A1RD	ZNF814	SNP	Missense_Mutation	19	58386210	G	A	45	59
BRCA	TCGA-E9-A1RD	INSR	SNP	Missense_Mutation	19	7141753	C	G	30	97
BRCA	TCGA-E9-A1RD	TIMM44	SNP	Missense_Mutation	19	7992179	G	A	38	71
BRCA	TCGA-E9-A1RD	SCN2A	SNP	Missense_Mutation	2	166152440	G	A	33	74
BRCA	TCGA-E9-A1RD	PCNT	SNP	Missense_Mutation	21	47808670	G	T	41	62
BRCA	TCGA-E9-A1RD	F8	SNP	Missense_Mutation	23	154133122	G	C	36	63
BRCA	TCGA-E9-A1RD	PIK3CA	SNP	Missense_Mutation	3	178936082	G	A	45	98
BRCA	TCGA-E9-A1RD	FAT4	SNP	Silent	4	126336088	G	A	42	27
BRCA	TCGA-E9-A1RD	FBXL5	SNP	Missense_Mutation	4	15629638	G	A	45	81
BRCA	TCGA-E9-A1RD	BEND4	SNP	Nonsense_Mutation	4	42145871	C	A	31	86
BRCA	TCGA-E9-A1RD	PCDHGA5	SNP	Missense_Mutation	5	140745887	G	A	40	53
BRCA	TCGA-E9-A1RD	C5orf45	SNP	Missense_Mutation	5	179280390	C	T	20	79
BRCA	TCGA-E9-A1RD	MAP3K1	INS	Frame_Shift_Ins	5	56177410	-	T	28	77
BRCA	TCGA-E9-A1RD	MAP3K1	INS	Frame_Shift_Ins	5	56178459	-	A	49	56
BRCA	TCGA-E9-A1RD	VCAN	SNP	Silent	5	82850848	C	T	25	53
BRCA	TCGA-E9-A1RD	TMEM242	SNP	Silent	6	157739784	G	A	33	62
BRCA	TCGA-E9-A1RD	PRSS35	SNP	Missense_Mutation	6	84233305	G	A	38	47
BRCA	TCGA-E9-A1RD	DTX2	SNP	Missense_Mutation	7	76126735	C	T	30	72
BRCA	TCGA-E9-A1RD	SLC25A32	SNP	Missense_Mutation	8	104419920	G	C	45	99
BRCA	TCGA-E9-A1RE	SPTA1	SNP	Missense_Mutation	1	158627369	G	T	41	60
BRCA	TCGA-E9-A1RE	PRRX1	SNP	Missense_Mutation	1	170695530	C	T	27	93
BRCA	TCGA-E9-A1RE	DNM3	SNP	Splice_site	1	171956945	G	A	39	97
BRCA	TCGA-E9-A1RE	QSOX1	SNP	Missense_Mutation	1	180135688	T	A	55	71
BRCA	TCGA-E9-A1RE	NCF2	SNP	Nonsense_Mutation	1	183556058	G	A	40	60
BRCA	TCGA-E9-A1RE	USP1	SNP	Nonsense_Mutation	1	62910497	C	T	21	82
BRCA	TCGA-E9-A1RE	UNC5B	SNP	Missense_Mutation	10	73044530	C	A	28	76
BRCA	TCGA-E9-A1RE	MUC2	SNP	Silent	11	1093245	A	T	5	39
BRCA	TCGA-E9-A1RE	OR52K1	SNP	Nonsense_Mutation	11	4510284	C	T	21	49
BRCA	TCGA-E9-A1RE	GRASP	SNP	Missense_Mutation	12	52407973	C	T	27	75
BRCA	TCGA-E9-A1RE	RDH16	SNP	Silent	12	57351117	G	A	36	61
BRCA	TCGA-E9-A1RE	TUBGCP3	SNP	Missense_Mutation	13	113140381	C	T	31	95
BRCA	TCGA-E9-A1RE	TRPC4	SNP	Splice_Site	13	38213437	C	G	32	99
BRCA	TCGA-E9-A1RE	RYR3	SNP	Missense_Mutation	15	33872233	C	A	18	85
BRCA	TCGA-E9-A1RE	PLA2G4D	SNP	Missense_Mutation	15	42374005	C	T	26	50
BRCA	TCGA-E9-A1RE	HS3ST4	SNP	Missense_Mutation	16	26147331	A	C	1	64
BRCA	TCGA-E9-A1RE	ITGA3	SNP	Missense_Mutation	17	48166523	A	G	6	73
BRCA	TCGA-E9-A1RE	GRIN2C	SNP	Silent	17	72846369	G	A	38	45
BRCA	TCGA-E9-A1RE	MAST1	SNP	Missense_Mutation	19	12962989	G	A	43	97
BRCA	TCGA-E9-A1RE	STX10	SNP	Missense_Mutation	19	13255448	G	C	47	58
BRCA	TCGA-E9-A1RE	SLC7A9	SNP	Silent	19	33355671	G	A	45	53
BRCA	TCGA-E9-A1RE	H2BFM	SNP	Missense_Mutation	23	103294608	T	C	50	48
BRCA	TCGA-E9-A1RE	COL4A6	SNP	Silent	23	107422068	G	A	40	51
BRCA	TCGA-E9-A1RE	FAM70A	SNP	Missense_Mutation	23	119421019	T	C	62	73
BRCA	TCGA-E9-A1RE	DMD	SNP	Missense_Mutation	23	31514996	A	C	6	68
BRCA	TCGA-E9-A1RE	DMD	SNP	Missense_Mutation	23	32366618	G	T	46	88
BRCA	TCGA-E9-A1RE	GNL3L	SNP	Silent	23	54569444	G	A	41	51
BRCA	TCGA-E9-A1RE	BOC	SNP	Missense_Mutation	3	112969456	G	A	42	94
BRCA	TCGA-E9-A1RE	KY	SNP	Silent	3	134323234	C	T	26	56
BRCA	TCGA-E9-A1RE	PIK3CA	SNP	Missense_Mutation	3	178916924	C	T	21	97
BRCA	TCGA-E9-A1RE	IL17RE	SNP	Silent	3	9956194	T	C	51	49
BRCA	TCGA-E9-A1RE	FBN2	SNP	Missense_Mutation	5	127685051	G	C	39	57
BRCA	TCGA-E9-A1RE	ADAMTS19	SNP	Nonsense_Mutation	5	129030517	C	T	31	82
BRCA	TCGA-E9-A1RE	PCDHB8	SNP	Missense_Mutation	5	140558070	C	A	27	51
BRCA	TCGA-E9-A1RE	ATP10B	SNP	Nonsense_Mutation	5	160033805	G	A	38	73
BRCA	TCGA-E9-A1RE	FAM153C	SNP	Missense_Mutation	5	177468759	C	T	29	46
BRCA	TCGA-E9-A1RE	MRPS27	SNP	Missense_Mutation	5	71616019	C	T	25	42
BRCA	TCGA-E9-A1RE	SLC22A1	SNP	Missense_Mutation	6	160560827	C	T	23	74
BRCA	TCGA-E9-A1RE	TRIP6	SNP	Missense_Mutation	7	100470878	G	A	38	88
BRCA	TCGA-E9-A1RE	CTTNBP2	SNP	Missense_Mutation	7	117375356	G	A	37	86
BRCA	TCGA-E9-A1RE	PTPRZ1	SNP	Silent	7	121695126	C	T	32	57
BRCA	TCGA-E9-A1RE	PKHD1L1	SNP	Missense_Mutation	8	110527447	T	C	53	81
BRCA	TCGA-E9-A1RE	ADRA1A	SNP	Silent	8	26722154	G	A	39	42
BRCA	TCGA-E9-A1RE	FAM75D1	SNP	Missense_Mutation	9	84607812	G	T	45	41
BRCA	TCGA-E9-A1RE	PTPRD	SNP	Missense_Mutation	9	8504378	A	G	12	68
BRCA	TCGA-E9-A1RE	SECISBP2	SNP	Missense_Mutation	9	91934622	A	G	4	48
BRCA	TCGA-E9-A1RF	TBX15	SNP	Missense_Mutation	1	119467310	T	C	63	79
BRCA	TCGA-E9-A1RF	POLR3GL	SNP	Missense_Mutation	1	145457582	C	A	28	70
BRCA	TCGA-E9-A1RF	HIST2H2AC	SNP	Silent	1	149858554	G	A	35	50
BRCA	TCGA-E9-A1RF	CGN	SNP	Silent	1	151492732	C	T	24	69
BRCA	TCGA-E9-A1RF	RPTN	SNP	Missense_Mutation	1	152128108	C	G	32	53
BRCA	TCGA-E9-A1RF	SCYL3	SNP	Silent	1	169825046	C	T	21	55
BRCA	TCGA-E9-A1RF	HMCN1	SNP	Silent	1	185892721	C	A	28	55
BRCA	TCGA-E9-A1RF	OPTC	SNP	Missense_Mutation	1	203468972	C	T	26	69
BRCA	TCGA-E9-A1RF	NSL1	SNP	Missense_Mutation	1	212912896	C	G	30	56
BRCA	TCGA-E9-A1RF	OBSCN	SNP	Silent	1	228521396	C	A	29	54
BRCA	TCGA-E9-A1RF	GNPAT	SNP	Missense_Mutation	1	231411054	C	T	28	90
BRCA	TCGA-E9-A1RF	FMN2	SNP	Missense_Mutation	1	240494024	C	T	21	100
BRCA	TCGA-E9-A1RF	TNFRSF25	SNP	Missense_Mutation	1	6522132	G	T	43	50
BRCA	TCGA-E9-A1RF	GBP4	SNP	Missense_Mutation	1	89658761	G	C	34	50
BRCA	TCGA-E9-A1RF	VAX1	SNP	Silent	10	118891744	C	G	22	51
BRCA	TCGA-E9-A1RF	GATA3	INS	Frame_Shift_Ins	10	8111471	-	T	20	78
BRCA	TCGA-E9-A1RF	DNTT	SNP	Missense_Mutation	10	98092226	G	A	40	49
BRCA	TCGA-E9-A1RF	MUC5B	SNP	Missense_Mutation	11	1268294	C	A	20	58
BRCA	TCGA-E9-A1RF	MUC5B	SNP	Silent	11	1271076	C	T	27	52
BRCA	TCGA-E9-A1RF	KIAA1549L	SNP	Missense_Mutation	11	33581421	T	C	52	89
BRCA	TCGA-E9-A1RF	NUP160	SNP	Silent	11	47869781	G	C	33	50
BRCA	TCGA-E9-A1RF	PGA5	SNP	Missense_Mutation	11	61017398	G	C	34	53
BRCA	TCGA-E9-A1RF	UHRF1BP1L	SNP	Missense_Mutation	12	100444935	G	C	44	48
BRCA	TCGA-E9-A1RF	ANAPC7	SNP	Missense_Mutation	12	110815309	C	T	19	98
BRCA	TCGA-E9-A1RF	HPD	SNP	Missense_Mutation	12	122277893	G	A	39	87
BRCA	TCGA-E9-A1RF	TMEM132D	SNP	Missense_Mutation	12	129558828	C	A	22	81
BRCA	TCGA-E9-A1RF	LRTM2	SNP	Missense_Mutation	12	1940299	C	A	26	69
BRCA	TCGA-E9-A1RF	SLC6A13	SNP	Missense_Mutation	12	368960	G	A	33	52
BRCA	TCGA-E9-A1RF	IRAK4	SNP	Missense_Mutation	12	44176271	C	A	32	98
BRCA	TCGA-E9-A1RF	IKZF4	SNP	Missense_Mutation	12	56418866	G	T	36	59
BRCA	TCGA-E9-A1RF	RBP5	SNP	Silent	12	7280866	G	A	44	58
BRCA	TCGA-E9-A1RF	BIVM	SNP	Missense_Mutation	13	103459852	G	T	42	78
BRCA	TCGA-E9-A1RF	ABHD13	SNP	Missense_Mutation	13	108882099	C	G	20	100
BRCA	TCGA-E9-A1RF	CKB	SNP	Missense_Mutation	14	103986486	G	A	38	64
BRCA	TCGA-E9-A1RF	KLC1	SNP	Silent	14	104040485	C	T	26	55
BRCA	TCGA-E9-A1RF	SPTSSA	SNP	Missense_Mutation	14	34904481	C	T	26	84
BRCA	TCGA-E9-A1RF	C14orf39	SNP	Missense_Mutation	14	60908795	T	G	50	54
BRCA	TCGA-E9-A1RF	AHSA1	SNP	Missense_Mutation	14	77929072	A	G	4	51
BRCA	TCGA-E9-A1RF	PIGB	SNP	Silent	15	55633010	G	C	46	51
BRCA	TCGA-E9-A1RF	C16orf45	SNP	Missense_Mutation	16	15677024	A	C	9	86
BRCA	TCGA-E9-A1RF	PRKCB	SNP	Missense_Mutation	16	24124299	A	T	3	88
BRCA	TCGA-E9-A1RF	SRCAP	SNP	Nonsense_Mutation	16	30745237	G	T	41	98
BRCA	TCGA-E9-A1RF	CDH8	SNP	Missense_Mutation	16	61823301	C	G	29	98
BRCA	TCGA-E9-A1RF	WDR24	INS	Frame_Shift_Ins	16	735108	-	A	21	71
BRCA	TCGA-E9-A1RF	BCAR1	SNP	Missense_Mutation	16	75267782	T	C	51	70
BRCA	TCGA-E9-A1RF	CTU2	SNP	Silent	16	88781476	G	A	38	24
BRCA	TCGA-E9-A1RF	TMEM186	SNP	Silent	16	8890208	C	T	29	55
BRCA	TCGA-E9-A1RF	MYH8	SNP	Missense_Mutation	17	10318692	C	G	30	97
BRCA	TCGA-E9-A1RF	NCOR1	SNP	Nonsense_Mutation	17	15989636	G	T	45	92
BRCA	TCGA-E9-A1RF	RAD51D	SNP	Missense_Mutation	17	33443953	C	T	30	46
BRCA	TCGA-E9-A1RF	KLHL10	SNP	Missense_Mutation	17	40004264	C	G	22	98
BRCA	TCGA-E9-A1RF	FAM117A	SNP	Missense_Mutation	17	47793671	G	A	33	87
BRCA	TCGA-E9-A1RF	LPIN2	SNP	Missense_Mutation	18	2937960	C	G	18	91
BRCA	TCGA-E9-A1RF	CDH7	SNP	Silent	18	63491905	G	A	36	48
BRCA	TCGA-E9-A1RF	COMP	SNP	Missense_Mutation	19	18899673	G	A	43	71
BRCA	TCGA-E9-A1RF	SUGP2	SNP	Missense_Mutation	19	19112432	G	A	41	79
BRCA	TCGA-E9-A1RF	MLL4	SNP	Missense_Mutation	19	36220105	G	A	40	73
BRCA	TCGA-E9-A1RF	NUMBL	SNP	Missense_Mutation	19	41175875	G	C	33	65
BRCA	TCGA-E9-A1RF	ZNF417	SNP	Missense_Mutation	19	58420121	C	G	17	25
BRCA	TCGA-E9-A1RF	ZNF606	SNP	Missense_Mutation	19	58489955	T	G	59	87
BRCA	TCGA-E9-A1RF	ELAVL1	SNP	Silent	19	8032481	T	G	54	62
BRCA	TCGA-E9-A1RF	DPP10	SNP	Missense_Mutation	2	116066924	C	G	18	95
BRCA	TCGA-E9-A1RF	GPR17	SNP	Missense_Mutation	2	128407626	C	A	22	49
BRCA	TCGA-E9-A1RF	NCKAP5	SNP	Missense_Mutation	2	133483301	G	T	42	61
BRCA	TCGA-E9-A1RF	YSK4	SNP	Missense_Mutation	2	135756375	G	T	48	40
BRCA	TCGA-E9-A1RF	STAM2	SNP	Silent	2	152977211	C	T	21	67
BRCA	TCGA-E9-A1RF	TTN	SNP	Missense_Mutation	2	179438827	G	T	47	100
BRCA	TCGA-E9-A1RF	NCKAP1	SNP	Missense_Mutation	2	183843584	C	A	29	100
BRCA	TCGA-E9-A1RF	MDH1B	SNP	Missense_Mutation	2	207625725	C	A	17	85
BRCA	TCGA-E9-A1RF	TNS1	SNP	Silent	2	218745658	G	A	40	32
BRCA	TCGA-E9-A1RF	DOCK10	SNP	Silent	2	225652079	C	T	20	53
BRCA	TCGA-E9-A1RF	SP140L	SNP	Silent	2	231266471	G	T	44	50
BRCA	TCGA-E9-A1RF	CTNNA2	SNP	Missense_Mutation	2	80773158	A	C	6	93
BRCA	TCGA-E9-A1RF	RETSAT	SNP	Missense_Mutation	2	85570908	G	C	36	55
BRCA	TCGA-E9-A1RF	KIDINS220	SNP	Missense_Mutation	2	8919137	G	A	38	76
BRCA	TCGA-E9-A1RF	KIF16B	SNP	Missense_Mutation	20	16354954	T	C	55	47
BRCA	TCGA-E9-A1RF	AHCY	SNP	Splice_Site	20	32873245	C	A	18	96
BRCA	TCGA-E9-A1RF	SEMG2	SNP	Missense_Mutation	20	43851891	C	G	29	44
BRCA	TCGA-E9-A1RF	PRPF6	SNP	Missense_Mutation	20	62626765	G	A	42	85
BRCA	TCGA-E9-A1RF	LIPI	SNP	Missense_Mutation	21	15554120	G	T	40	77
BRCA	TCGA-E9-A1RF	DSCAM	SNP	Silent	21	41465724	G	A	38	54
BRCA	TCGA-E9-A1RF	KRTAP10-5	SNP	Missense_Mutation	21	45999699	G	A	39	53
BRCA	TCGA-E9-A1RF	RFPL2	SNP	Nonsense_Mutation	22	32589028	G	T	34	51
BRCA	TCGA-E9-A1RF	XPNPEP3	SNP	Missense_Mutation	22	41253216	G	C	44	61
BRCA	TCGA-E9-A1RF	NDUFA6	SNP	Missense_Mutation	22	42483141	G	A	40	67
BRCA	TCGA-E9-A1RF	CXorf57	SNP	Missense_Mutation	23	105879795	G	T	36	55
BRCA	TCGA-E9-A1RF	ASB11	SNP	Missense_Mutation	23	15306047	G	A	38	73
BRCA	TCGA-E9-A1RF	F8	SNP	Missense_Mutation	23	154133160	C	A	20	64
BRCA	TCGA-E9-A1RF	RAI2	SNP	Missense_Mutation	23	17819682	G	T	44	82
BRCA	TCGA-E9-A1RF	USP9X	SNP	Missense_Mutation	23	41043849	C	G	20	100
BRCA	TCGA-E9-A1RF	KDM6A	SNP	Missense_Mutation	23	44913106	G	C	33	96
BRCA	TCGA-E9-A1RF	DLG3	SNP	Missense_Mutation	23	69672527	C	G	26	58
BRCA	TCGA-E9-A1RF	ATP6V1A	SNP	Missense_Mutation	3	113524322	C	T	31	63
BRCA	TCGA-E9-A1RF	PLXND1	SNP	Missense_Mutation	3	129286352	G	A	39	86
BRCA	TCGA-E9-A1RF	ATP13A3	SNP	Missense_Mutation	3	194151723	C	T	19	100
BRCA	TCGA-E9-A1RF	MYD88	SNP	Silent	3	38182756	C	G	21	70
BRCA	TCGA-E9-A1RF	MOBP	SNP	Missense_Mutation	3	39543701	T	G	57	49
BRCA	TCGA-E9-A1RF	PALLD	SNP	Missense_Mutation	4	169632939	C	T	19	69
BRCA	TCGA-E9-A1RF	LETM1	SNP	Silent	4	1834627	A	G	1	60
BRCA	TCGA-E9-A1RF	TLR3	SNP	Missense_Mutation	4	187004105	T	C	49	71
BRCA	TCGA-E9-A1RF	GNPDA2	SNP	Missense_Mutation	4	44709931	T	C	49	87
BRCA	TCGA-E9-A1RF	GABRA2	SNP	Missense_Mutation	4	46264108	G	C	45	67
BRCA	TCGA-E9-A1RF	KIAA0232	SNP	Silent	4	6863768	A	T	15	65
BRCA	TCGA-E9-A1RF	ADAMTS3	SNP	Missense_Mutation	4	73414439	A	T	1	92
BRCA	TCGA-E9-A1RF	PRDM6	SNP	Missense_Mutation	5	122491625	A	T	2	50
BRCA	TCGA-E9-A1RF	ZNF354A	SNP	Missense_Mutation	5	178154017	C	G	24	52
BRCA	TCGA-E9-A1RF	CDH9	SNP	Silent	5	26890044	G	A	48	34
BRCA	TCGA-E9-A1RF	ZSWIM6	SNP	Missense_Mutation	5	60839621	A	T	14	77
BRCA	TCGA-E9-A1RF	GRIK2	SNP	Missense_Mutation	6	102483396	G	C	47	100
BRCA	TCGA-E9-A1RF	PDE10A	SNP	Missense_Mutation	6	165792776	A	G	4	80
BRCA	TCGA-E9-A1RF	HIST1H4L	SNP	Missense_Mutation	6	27841034	C	T	21	82
BRCA	TCGA-E9-A1RF	ELOVL5	SNP	Nonsense_Mutation	6	53140987	G	C	45	82
BRCA	TCGA-E9-A1RF	PHIP	SNP	Missense_Mutation	6	79725444	G	T	34	95
BRCA	TCGA-E9-A1RF	DGKI	SNP	Silent	7	137293718	G	C	46	52
BRCA	TCGA-E9-A1RF	MMD2	SNP	Silent	7	4947132	G	A	40	48
BRCA	TCGA-E9-A1RF	SAMD9	SNP	Missense_Mutation	7	92731415	G	C	46	47
BRCA	TCGA-E9-A1RF	SMURF1	SNP	Missense_Mutation	7	98638117	G	T	36	100
BRCA	TCGA-E9-A1RF	ADCY8	SNP	Missense_Mutation	8	131916201	G	C	41	88
BRCA	TCGA-E9-A1RF	TMEM64	SNP	Missense_Mutation	8	91638033	T	A	62	80
BRCA	TCGA-E9-A1RF	CDK5RAP2	SNP	Missense_Mutation	9	123201828	G	C	43	60
BRCA	TCGA-E9-A1RF	GARNL3	SNP	Splice_Site	9	130095401	G	C	36	92
BRCA	TCGA-E9-A1RF	IFNA2	SNP	Missense_Mutation	9	21385064	G	T	33	53
BRCA	TCGA-E9-A1RF	FAM75A6	SNP	Missense_Mutation	9	43630592	C	A	22	53
BRCA	TCGA-E9-A1RF	TRPM3	SNP	Missense_Mutation	9	73458041	C	A	17	100
BRCA	TCGA-E9-A1RG	PTCHD2	SNP	Missense_Mutation	1	11594443	G	A	40	51
BRCA	TCGA-E9-A1RG	MAB21L3	SNP	Splice_Site	1	116663694	G	T	44	84
BRCA	TCGA-E9-A1RG	VPS13D	SNP	Missense_Mutation	1	12378344	C	T	30	99
BRCA	TCGA-E9-A1RG	BTF3L4	INS	Frame_Shift_Ins	1	52530570	-	A	53	93
BRCA	TCGA-E9-A1RG	H2AFY2	SNP	Missense_Mutation	10	71835425	G	A	39	100
BRCA	TCGA-E9-A1RG	CCDC73	SNP	Missense_Mutation	11	32675581	T	G	52	52
BRCA	TCGA-E9-A1RG	GANAB	SNP	Silent	11	62394094	T	G	55	47
BRCA	TCGA-E9-A1RG	SUV420H1	SNP	Missense_Mutation	11	67925891	G	A	38	28
BRCA	TCGA-E9-A1RG	ACACB	SNP	Silent	12	109654462	G	T	48	52
BRCA	TCGA-E9-A1RG	KIAA1551	SNP	Missense_Mutation	12	32137328	T	C	59	46
BRCA	TCGA-E9-A1RG	PCID2	SNP	Silent	13	113838712	T	C	51	26
BRCA	TCGA-E9-A1RG	SUPT16H	SNP	Missense_Mutation	14	21834653	C	A	30	96
BRCA	TCGA-E9-A1RG	CARM1	SNP	Missense_Mutation	19	11027383	C	T	32	98
BRCA	TCGA-E9-A1RG	ZNF671	SNP	Missense_Mutation	19	58232276	C	G	30	71
BRCA	TCGA-E9-A1RG	OSGEPL1	SNP	Missense_Mutation	2	190620045	T	C	49	62
BRCA	TCGA-E9-A1RG	MAT2A	SNP	Missense_Mutation	2	85769862	C	G	32	73
BRCA	TCGA-E9-A1RG	MID1	SNP	Missense_Mutation	23	10491176	C	G	30	93
BRCA	TCGA-E9-A1RG	IGSF11	SNP	Silent	3	118647513	G	A	40	49
BRCA	TCGA-E9-A1RG	TSEN2	SNP	Missense_Mutation	3	12531481	A	G	16	75
BRCA	TCGA-E9-A1RG	ACAD11	SNP	Missense_Mutation	3	132277850	G	A	38	52
BRCA	TCGA-E9-A1RG	RNF168	SNP	Missense_Mutation	3	196199594	A	G	16	45
BRCA	TCGA-E9-A1RG	DHX30	SNP	Nonsense_Mutation	3	47882665	C	G	29	57
BRCA	TCGA-E9-A1RG	LAMB2	SNP	Nonsense_Mutation	3	49163267	G	A	45	100
BRCA	TCGA-E9-A1RG	ANK2	SNP	Missense_Mutation	4	114203939	A	C	2	71
BRCA	TCGA-E9-A1RG	MFSD8	SNP	Missense_Mutation	4	128886286	C	T	21	73
BRCA	TCGA-E9-A1RG	ZNF330	SNP	Splice_Site	4	142150852	G	T	44	100
BRCA	TCGA-E9-A1RG	FSTL5	SNP	Missense_Mutation	4	162680584	C	T	29	83
BRCA	TCGA-E9-A1RG	PCDHA2	SNP	Silent	5	140174750	G	A	40	49
BRCA	TCGA-E9-A1RG	PCDHGA1	SNP	Silent	5	140711823	G	A	36	57
BRCA	TCGA-E9-A1RG	ODZ2	SNP	Missense_Mutation	5	167645851	C	A	24	88
BRCA	TCGA-E9-A1RG	CKMT2	SNP	Missense_Mutation	5	80553653	G	A	37	100
BRCA	TCGA-E9-A1RG	ARRDC3	SNP	Missense_Mutation	5	90670780	T	C	49	93
BRCA	TCGA-E9-A1RG	LAMB4	SNP	Missense_Mutation	7	107684275	C	G	22	49
BRCA	TCGA-E9-A1RG	ABCA13	SNP	Missense_Mutation	7	48314170	G	C	35	54
BRCA	TCGA-E9-A1RG	C7orf26	SNP	Nonsense_Mutation	7	6634119	C	A	20	94
BRCA	TCGA-E9-A1RH	OTUD7B	SNP	Missense_Mutation	1	149943095	C	A	20	59
BRCA	TCGA-E9-A1RH	RPTN	SNP	Missense_Mutation	1	152129314	A	C	16	56
BRCA	TCGA-E9-A1RH	ASH1L	DEL	In_Frame_Del	1	155449169	AGG	-	15	48
BRCA	TCGA-E9-A1RH	PRRC2C	SNP	Missense_Mutation	1	171526725	C	T	20	72
BRCA	TCGA-E9-A1RH	VASH2	SNP	Nonsense_Mutation	1	213145986	G	T	35	100
BRCA	TCGA-E9-A1RH	TGFBR3	SNP	Silent	1	92185007	C	T	23	15
BRCA	TCGA-E9-A1RH	CALHM3	SNP	Missense_Mutation	10	105233294	G	T	36	74
BRCA	TCGA-E9-A1RH	FAM45A	SNP	Silent	10	120871384	G	C	45	60
BRCA	TCGA-E9-A1RH	NOC3L	SNP	Silent	10	96101465	G	A	33	55
BRCA	TCGA-E9-A1RH	RFX4	SNP	Missense_Mutation	12	107002600	C	G	19	49
BRCA	TCGA-E9-A1RH	GOLGA3	SNP	Missense_Mutation	12	133349744	C	T	31	57
BRCA	TCGA-E9-A1RH	TMTC1	SNP	Splice_Site	12	29669421	T	G	53	86
BRCA	TCGA-E9-A1RH	CD163L1	SNP	Silent	12	7531857	G	A	46	62
BRCA	TCGA-E9-A1RH	DPPA3	SNP	Silent	12	7867843	T	C	57	48
BRCA	TCGA-E9-A1RH	FRY	SNP	Silent	13	32698787	T	C	56	75
BRCA	TCGA-E9-A1RH	PCDH20	DEL	Frame_Shift_Del	13	61986915	AACC	-	1	48
BRCA	TCGA-E9-A1RH	DZIP1	SNP	Silent	13	96293774	C	A	27	51
BRCA	TCGA-E9-A1RH	LRRC16B	SNP	Missense_Mutation	14	24534925	G	T	33	76
BRCA	TCGA-E9-A1RH	GPHN	SNP	Missense_Mutation	14	67147848	C	A	32	88
BRCA	TCGA-E9-A1RH	SLC10A1	SNP	Missense_Mutation	14	70252848	G	T	41	69
BRCA	TCGA-E9-A1RH	ADAM20	SNP	Missense_Mutation	14	70989500	C	A	26	58
BRCA	TCGA-E9-A1RH	HERC2	SNP	Missense_Mutation	15	28479350	C	G	30	97
BRCA	TCGA-E9-A1RH	HERC1	SNP	Silent	15	64067208	T	C	51	52
BRCA	TCGA-E9-A1RH	IGDCC4	SNP	Splice_site	15	65689327	T	A	58	87
BRCA	TCGA-E9-A1RH	CASKIN1	SNP	Missense_Mutation	16	2236791	C	G	26	96
BRCA	TCGA-E9-A1RH	CCDC144B	INS	Splice_Site	17	18498059	-	A	29	54
BRCA	TCGA-E9-A1RH	ULK2	SNP	Missense_Mutation	17	19699015	G	A	45	96
BRCA	TCGA-E9-A1RH	MAPT	SNP	Silent	17	44087762	C	T	27	54
BRCA	TCGA-E9-A1RH	VPS53	SNP	Missense_Mutation	17	556562	C	T	22	96
BRCA	TCGA-E9-A1RH	GABARAP	SNP	Missense_Mutation	17	7144763	G	A	33	69
BRCA	TCGA-E9-A1RH	RECQL5	SNP	Missense_Mutation	17	73657754	C	G	32	100
BRCA	TCGA-E9-A1RH	FHOD3	SNP	Missense_Mutation	18	34298167	C	T	23	55
BRCA	TCGA-E9-A1RH	SLC1A6	SNP	Missense_Mutation	19	15073025	G	A	37	56
BRCA	TCGA-E9-A1RH	FXYD3	SNP	Splice_site	19	35614360	G	C	45	58
BRCA	TCGA-E9-A1RH	ZNF577	SNP	Silent	19	52381691	G	T	33	53
BRCA	TCGA-E9-A1RH	ZNF551	SNP	Missense_Mutation	19	58199270	C	T	27	38
BRCA	TCGA-E9-A1RH	NCKAP5	SNP	Missense_Mutation	2	133541010	G	A	42	43
BRCA	TCGA-E9-A1RH	UBR3	SNP	Missense_Mutation	2	170780651	A	C	4	91
BRCA	TCGA-E9-A1RH	TTN	SNP	Missense_Mutation	2	179469856	T	C	61	50
BRCA	TCGA-E9-A1RH	TTN	SNP	Missense_Mutation	2	179499514	G	T	44	60
BRCA	TCGA-E9-A1RH	ORC2	SNP	Nonsense_Mutation	2	201790582	C	T	21	56
BRCA	TCGA-E9-A1RH	ZNF142	SNP	Missense_Mutation	2	219513520	C	T	32	74
BRCA	TCGA-E9-A1RH	STK25	SNP	Missense_Mutation	2	242437657	G	A	45	79
BRCA	TCGA-E9-A1RH	CD93	SNP	Missense_Mutation	20	23065078	G	C	33	51
BRCA	TCGA-E9-A1RH	LSM14B	SNP	Missense_Mutation	20	60706418	A	T	3	63
BRCA	TCGA-E9-A1RH	PFKL	SNP	Nonsense_Mutation	21	45725274	C	T	23	7
BRCA	TCGA-E9-A1RH	DGCR14	SNP	Silent	22	19121847	C	T	23	25
BRCA	TCGA-E9-A1RH	APOL3	SNP	Missense_Mutation	22	36541561	C	T	29	51
BRCA	TCGA-E9-A1RH	MAP7D2	SNP	Missense_Mutation	23	20069029	G	C	33	57
BRCA	TCGA-E9-A1RH	RBM10	SNP	Missense_Mutation	23	47045972	G	A	44	64
BRCA	TCGA-E9-A1RH	KDM5C	SNP	Silent	23	53247464	G	A	45	76
BRCA	TCGA-E9-A1RH	QTRTD1	SNP	Missense_Mutation	3	113795785	C	T	26	98
BRCA	TCGA-E9-A1RH	ADCY5	SNP	Silent	3	123051483	C	T	19	24
BRCA	TCGA-E9-A1RH	PLS1	SNP	Missense_Mutation	3	142430425	G	A	35	59
BRCA	TCGA-E9-A1RH	PIK3CA	DEL	In_Frame_Del	3	178916920	GAACCA	-	45	97
BRCA	TCGA-E9-A1RH	MUC4	SNP	Silent	3	195507132	G	A	40	71
BRCA	TCGA-E9-A1RH	TMEM115	SNP	Missense_Mutation	3	50392784	G	A	39	68
BRCA	TCGA-E9-A1RH	FLNB	SNP	Missense_Mutation	3	58087962	C	G	23	71
BRCA	TCGA-E9-A1RH	C3orf32	SNP	Missense_Mutation	3	8671361	C	G	23	73
BRCA	TCGA-E9-A1RH	GALNTL6	DEL	In_Frame_Del	4	173961139	AGA	-	11	90
BRCA	TCGA-E9-A1RH	AMBN	SNP	Silent	4	71471931	A	G	11	54
BRCA	TCGA-E9-A1RH	MMRN1	SNP	Nonsense_Mutation	4	90857362	T	A	63	80
BRCA	TCGA-E9-A1RH	HPGDS	SNP	Missense_Mutation	4	95239059	C	A	28	77
BRCA	TCGA-E9-A1RH	CTNND2	SNP	Missense_Mutation	5	11082867	C	A	25	100
BRCA	TCGA-E9-A1RH	DMXL1	SNP	Nonsense_Mutation	5	118500331	G	A	47	87
BRCA	TCGA-E9-A1RH	PCDHB7	SNP	Missense_Mutation	5	140553150	C	G	31	73
BRCA	TCGA-E9-A1RH	KIAA0947	SNP	Missense_Mutation	5	5465079	G	A	34	46
BRCA	TCGA-E9-A1RH	LYRM4	SNP	Missense_Mutation	6	5109694	T	C	56	72
BRCA	TCGA-E9-A1RH	NAMPT	SNP	Nonsense_Mutation	7	105893543	G	A	39	73
BRCA	TCGA-E9-A1RH	ZNF862	SNP	Missense_Mutation	7	149559197	G	T	41	68
BRCA	TCGA-E9-A1RH	TRGC1	SNP	Silent	7	38305276	T	G	64	44
BRCA	TCGA-E9-A1RH	PTK2	SNP	Missense_Mutation	8	141756921	G	C	34	59
BRCA	TCGA-E9-A1RH	CHMP7	SNP	Missense_Mutation	8	23114072	C	T	19	65
BRCA	TCGA-E9-A1RH	VCPIP1	SNP	Missense_Mutation	8	67546842	G	A	42	77
BRCA	TCGA-E9-A1RH	ATP6V0D2	SNP	Nonsense_Mutation	8	87153720	G	T	45	83
BRCA	TCGA-E9-A1RH	RC3H2	SNP	Silent	9	125652667	C	T	28	64
BRCA	TCGA-E9-A1RH	BNC2	SNP	Missense_Mutation	9	16727800	G	C	47	100
BRCA	TCGA-E9-A1RH	GRHPR	SNP	Missense_Mutation	9	37422820	C	T	23	51
BRCA	TCGA-E9-A1RI	FLG	SNP	Silent	1	152277093	C	T	26	45
BRCA	TCGA-E9-A1RI	ZBTB40	SNP	Silent	1	22835660	C	A	30	54
BRCA	TCGA-E9-A1RI	ZMYM2	SNP	Missense_Mutation	13	20625633	G	A	47	84
BRCA	TCGA-E9-A1RI	ACSF3	SNP	Missense_Mutation	16	89178629	C	T	27	75
BRCA	TCGA-E9-A1RI	TMEM97	SNP	Silent	17	26653645	G	C	48	42
BRCA	TCGA-E9-A1RI	TIMM44	SNP	Silent	19	7999109	G	A	45	51
BRCA	TCGA-E9-A1RI	PRODH	INS	Frame_Shift_Ins	22	18909913	-	T	20	68
BRCA	TCGA-E9-A1RI	KIAA2022	SNP	Silent	23	73961191	G	T	43	46
BRCA	TCGA-E9-A1RI	CSTA	SNP	Silent	3	122060396	C	T	19	37
BRCA	TCGA-E9-A1RI	ACTRT3	SNP	Silent	3	169487258	G	T	45	60
BRCA	TCGA-E9-A1RI	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-E9-A1RI	GPR15	SNP	Silent	3	98251078	G	A	45	56
BRCA	TCGA-E9-A1RI	CTAGE9	SNP	Missense_Mutation	6	132030507	G	A	44	NaN
BRCA	TCGA-E9-A1RI	CNTLN	SNP	Missense_Mutation	9	17466011	G	T	33	70
BRCA	TCGA-E9-A226	GOLT1A	SNP	Splice_Site	1	204172023	C	T	19	93
BRCA	TCGA-E9-A226	SLC30A10	SNP	Missense_Mutation	1	220088901	C	T	27	34
BRCA	TCGA-E9-A226	LRRTM3	SNP	Missense_Mutation	10	68857462	G	C	33	81
BRCA	TCGA-E9-A226	UBE4A	SNP	Missense_Mutation	11	118255404	T	G	50	93
BRCA	TCGA-E9-A226	SLC37A2	SNP	Missense_Mutation	11	124949049	C	T	29	59
BRCA	TCGA-E9-A226	CEP57	INS	Frame_Shift_Ins	11	95561001	-	T	32	61
BRCA	TCGA-E9-A226	SLC17A8	SNP	Silent	12	100795586	C	A	22	45
BRCA	TCGA-E9-A226	POLE2	SNP	Silent	14	50118020	A	T	2	51
BRCA	TCGA-E9-A226	IQGAP1	DEL	Frame_Shift_Del	15	90969467	AAAT	-	1	89
BRCA	TCGA-E9-A226	LLGL2	SNP	Silent	17	73566549	G	A	41	52
BRCA	TCGA-E9-A226	TP53	DEL	Frame_Shift_Del	17	7578464	GGGTGCCGGGCGG	-	39	53
BRCA	TCGA-E9-A226	EPHX3	SNP	Missense_Mutation	19	15338906	A	G	9	51
BRCA	TCGA-E9-A226	KCNJ14	SNP	Missense_Mutation	19	48967521	C	G	32	83
BRCA	TCGA-E9-A226	NOSIP	SNP	Silent	19	50059664	G	A	37	29
BRCA	TCGA-E9-A226	ZNF347	SNP	Nonsense_Mutation	19	53643755	G	A	45	50
BRCA	TCGA-E9-A226	LAIR2	SNP	Missense_Mutation	19	55019321	G	A	46	47
BRCA	TCGA-E9-A226	SPOPL	SNP	Missense_Mutation	2	139316712	G	T	33	100
BRCA	TCGA-E9-A226	WIPF1	SNP	Missense_Mutation	2	175446104	C	G	29	98
BRCA	TCGA-E9-A226	TTN	SNP	Silent	2	179640219	G	A	33	55
BRCA	TCGA-E9-A226	DUSP19	SNP	Missense_Mutation	2	183943684	T	C	52	91
BRCA	TCGA-E9-A226	COL6A3	SNP	Silent	2	238253836	G	A	38	38
BRCA	TCGA-E9-A226	RRP1	SNP	Silent	21	45222219	G	A	33	51
BRCA	TCGA-E9-A226	CNGA2	SNP	Missense_Mutation	23	150912869	C	T	27	58
BRCA	TCGA-E9-A226	PIK3CA	SNP	Missense_Mutation	3	178921553	T	A	51	69
BRCA	TCGA-E9-A226	ZNF608	SNP	Missense_Mutation	5	123982628	G	A	37	78
BRCA	TCGA-E9-A226	PCDHGA3	SNP	Missense_Mutation	5	140725783	C	T	31	81
BRCA	TCGA-E9-A226	MXD3	DEL	Frame_Shift_Del	5	176737446	CGGCG	-	19	69
BRCA	TCGA-E9-A226	PLEKHG1	SNP	Missense_Mutation	6	151152648	C	G	29	74
BRCA	TCGA-E9-A226	HIST1H3B	SNP	Missense_Mutation	6	26032071	C	G	31	98
BRCA	TCGA-E9-A226	WDR60	SNP	Missense_Mutation	7	158734770	A	G	2	47
BRCA	TCGA-E9-A226	AKAP9	SNP	Silent	7	91718998	T	C	53	46
BRCA	TCGA-E9-A226	ZFAT	SNP	Silent	8	135614282	C	A	25	52
BRCA	TCGA-E9-A226	TACC1	SNP	Silent	8	38693781	C	T	23	37
BRCA	TCGA-E9-A226	SGK3	SNP	Missense_Mutation	8	67716646	C	A	30	93
BRCA	TCGA-E9-A226	FAM154A	SNP	Silent	9	19032889	G	A	33	70
BRCA	TCGA-E9-A226	RMI1	SNP	Missense_Mutation	9	86616967	C	A	30	49
BRCA	TCGA-E9-A227	MED19	INS	Frame_Shift_Ins	11	57472466	-	C	34	53
BRCA	TCGA-E9-A227	TBC1D4	SNP	Missense_Mutation	13	75884201	C	T	30	96
BRCA	TCGA-E9-A227	ATP10A	SNP	Missense_Mutation	15	25966903	G	C	48	83
BRCA	TCGA-E9-A227	CTCF	SNP	Missense_Mutation	16	67645934	C	G	21	99
BRCA	TCGA-E9-A227	MARCH10	SNP	Missense_Mutation	17	60865932	C	T	32	51
BRCA	TCGA-E9-A227	DNAH2	SNP	Missense_Mutation	17	7708590	G	C	33	62
BRCA	TCGA-E9-A227	MAGEC3	SNP	Silent	23	140983249	G	A	39	42
BRCA	TCGA-E9-A227	CHST2	SNP	Silent	3	142840438	G	A	40	25
BRCA	TCGA-E9-A227	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E9-A227	FBXL7	SNP	Missense_Mutation	5	15928343	C	T	23	87
BRCA	TCGA-E9-A227	GPR98	SNP	Nonsense_Mutation	5	89948176	C	T	23	63
BRCA	TCGA-E9-A227	CLIC3	SNP	Silent	9	139889217	C	T	31	46
BRCA	TCGA-E9-A228	CASZ1	SNP	Missense_Mutation	1	10709343	C	T	27	95
BRCA	TCGA-E9-A228	AMPD2	SNP	Missense_Mutation	1	110168296	C	T	23	96
BRCA	TCGA-E9-A228	MTOR	SNP	Missense_Mutation	1	11294317	C	G	29	62
BRCA	TCGA-E9-A228	NME7	SNP	Missense_Mutation	1	169279296	C	T	32	78
BRCA	TCGA-E9-A228	SLC35F3	SNP	Silent	1	234041449	G	A	41	54
BRCA	TCGA-E9-A228	NID1	SNP	Missense_Mutation	1	236156947	G	A	39	81
BRCA	TCGA-E9-A228	VPS26A	SNP	Missense_Mutation	10	70917832	G	A	33	100
BRCA	TCGA-E9-A228	DHX37	SNP	Missense_Mutation	12	125449009	C	A	21	99
BRCA	TCGA-E9-A228	PPP1R12A	SNP	Silent	12	80199488	C	T	23	50
BRCA	TCGA-E9-A228	MYF5	SNP	Missense_Mutation	12	81111126	G	A	38	100
BRCA	TCGA-E9-A228	TOX4	SNP	Nonsense_Mutation	14	21963403	C	T	29	96
BRCA	TCGA-E9-A228	STXBP6	SNP	Silent	14	25288273	G	A	38	50
BRCA	TCGA-E9-A228	DNAL1	SNP	Missense_Mutation	14	74156135	A	G	4	93
BRCA	TCGA-E9-A228	PIF1	SNP	Silent	15	65114690	G	A	45	66
BRCA	TCGA-E9-A228	IREB2	SNP	Missense_Mutation	15	78783006	T	G	56	51
BRCA	TCGA-E9-A228	VWA3A	SNP	Missense_Mutation	16	22152977	C	T	32	54
BRCA	TCGA-E9-A228	TRIM37	SNP	Nonsense_Mutation	17	57126638	G	T	34	43
BRCA	TCGA-E9-A228	BRIP1	SNP	Missense_Mutation	17	59871074	C	T	27	52
BRCA	TCGA-E9-A228	STRADA	SNP	Missense_Mutation	17	61788157	T	C	49	77
BRCA	TCGA-E9-A228	SALL3	SNP	Missense_Mutation	18	76754213	G	A	46	100
BRCA	TCGA-E9-A228	AP1M2	SNP	Missense_Mutation	19	10689625	G	C	33	57
BRCA	TCGA-E9-A228	ZNF461	SNP	Missense_Mutation	19	37134740	T	C	59	54
BRCA	TCGA-E9-A228	MUC16	SNP	Missense_Mutation	19	9070657	C	T	19	42
BRCA	TCGA-E9-A228	SFXN5	SNP	Missense_Mutation	2	73249692	G	C	39	77
BRCA	TCGA-E9-A228	SOGA1	SNP	Missense_Mutation	20	35443721	C	A	28	54
BRCA	TCGA-E9-A228	SYNJ1	SNP	Missense_Mutation	21	34014274	G	A	40	84
BRCA	TCGA-E9-A228	MMGT1	SNP	Missense_Mutation	23	135053263	G	A	33	78
BRCA	TCGA-E9-A228	FAM120C	SNP	Missense_Mutation	23	54112160	G	A	39	53
BRCA	TCGA-E9-A228	FBLN2	SNP	Silent	3	13669372	G	A	39	37
BRCA	TCGA-E9-A228	ATP11B	SNP	Missense_Mutation	3	182566341	G	C	33	97
BRCA	TCGA-E9-A228	CACNA2D2	SNP	Silent	3	50404847	G	A	33	65
BRCA	TCGA-E9-A228	ELF2	SNP	Silent	4	139981717	G	T	35	59
BRCA	TCGA-E9-A228	PRDM6	SNP	Silent	5	122506701	G	A	39	51
BRCA	TCGA-E9-A228	PCDHGA3	SNP	Silent	5	140725490	A	C	11	48
BRCA	TCGA-E9-A228	ANXA6	SNP	Missense_Mutation	5	150509044	C	T	19	97
BRCA	TCGA-E9-A228	DDX4	SNP	Missense_Mutation	5	55094277	C	T	29	55
BRCA	TCGA-E9-A228	TTLL2	SNP	Missense_Mutation	6	167754327	A	T	3	51
BRCA	TCGA-E9-A228	MDN1	SNP	Missense_Mutation	6	90411765	G	A	38	59
BRCA	TCGA-E9-A228	NFE2L3	SNP	Missense_Mutation	7	26224525	T	A	56	56
BRCA	TCGA-E9-A228	FAM135B	SNP	Missense_Mutation	8	139255303	C	T	19	91
BRCA	TCGA-E9-A228	HEY1	SNP	Silent	8	80677525	G	A	41	52
BRCA	TCGA-E9-A228	ASTN2	SNP	Missense_Mutation	9	119488187	C	T	23	100
BRCA	TCGA-E9-A228	MAMDC4	SNP	Missense_Mutation	9	139752492	C	A	19	25
BRCA	TCGA-E9-A228	SPAG8	DEL	In_Frame_Del	9	35811486	CCAGGACCAGAG	-	18	53
BRCA	TCGA-E9-A229	SPTA1	SNP	Nonsense_Mutation	1	158583566	C	A	30	93
BRCA	TCGA-E9-A229	EPHA2	SNP	Missense_Mutation	1	16475203	C	T	19	61
BRCA	TCGA-E9-A229	XCL1	DEL	Frame_Shift_Del	1	168550428	GACCAATACAGCT	-	37	50
BRCA	TCGA-E9-A229	MMACHC	SNP	Silent	1	45974548	G	A	35	54
BRCA	TCGA-E9-A229	HEPACAM	SNP	Nonsense_Mutation	11	124794753	G	A	39	62
BRCA	TCGA-E9-A229	NUP98	SNP	Missense_Mutation	11	3803284	T	C	60	73
BRCA	TCGA-E9-A229	CYBASC3	SNP	Missense_Mutation	11	61120579	G	C	35	55
BRCA	TCGA-E9-A229	RTN3	SNP	Missense_Mutation	11	63525654	C	T	26	85
BRCA	TCGA-E9-A229	DRD4	DEL	Frame_Shift_Del	11	637537	CCGCCGACCTCCT	-	26	71
BRCA	TCGA-E9-A229	GLI1	SNP	Missense_Mutation	12	57863448	C	T	23	86
BRCA	TCGA-E9-A229	GEMIN2	SNP	Silent	14	39584053	C	T	21	85
BRCA	TCGA-E9-A229	TNP2	SNP	Missense_Mutation	16	11362818	C	T	27	59
BRCA	TCGA-E9-A229	CCP110	SNP	Silent	16	19556523	C	G	29	56
BRCA	TCGA-E9-A229	FXR2	SNP	Silent	17	7496417	C	T	22	48
BRCA	TCGA-E9-A229	PSTPIP2	SNP	Missense_Mutation	18	43579418	G	A	39	46
BRCA	TCGA-E9-A229	FOXA3	SNP	Silent	19	46376175	C	T	32	60
BRCA	TCGA-E9-A229	C1QL2	SNP	Silent	2	119915594	C	T	23	41
BRCA	TCGA-E9-A229	ARL6IP6	DEL	In_Frame_Del	2	153575506	TCC	-	62	56
BRCA	TCGA-E9-A229	OSBPL6	SNP	Missense_Mutation	2	179213982	G	A	38	97
BRCA	TCGA-E9-A229	HEATR5B	SNP	Silent	2	37306265	T	C	52	80
BRCA	TCGA-E9-A229	CASS4	SNP	Missense_Mutation	20	55021046	G	A	40	42
BRCA	TCGA-E9-A229	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-E9-A229	PLK4	SNP	Silent	4	128804491	G	A	45	60
BRCA	TCGA-E9-A229	DSPP	SNP	Silent	4	88537444	C	T	25	50
BRCA	TCGA-E9-A229	CHD1	SNP	Missense_Mutation	5	98240749	G	C	33	93
BRCA	TCGA-E9-A229	CBX3	DEL	Frame_Shift_Del	7	26248161	AAGAA	-	9	92
BRCA	TCGA-E9-A229	SARDH	SNP	Silent	9	136531950	G	T	42	53
BRCA	TCGA-E9-A22A	PTGS2	SNP	Silent	1	186648296	G	A	47	46
BRCA	TCGA-E9-A22A	F13B	SNP	Missense_Mutation	1	197009842	C	T	29	65
BRCA	TCGA-E9-A22A	C1orf116	SNP	Missense_Mutation	1	207195445	C	A	28	52
BRCA	TCGA-E9-A22A	OR2L13	SNP	Missense_Mutation	1	248263455	C	T	31	51
BRCA	TCGA-E9-A22A	OR2M7	SNP	Nonsense_Mutation	1	248487711	G	A	47	54
BRCA	TCGA-E9-A22A	STIL	SNP	Missense_Mutation	1	47748020	C	G	32	52
BRCA	TCGA-E9-A22A	FAM151A	SNP	Missense_Mutation	1	55075124	T	C	53	55
BRCA	TCGA-E9-A22A	RERE	DEL	In_Frame_Del	1	8716322	TCTTTG	-	54	84
BRCA	TCGA-E9-A22A	CUBN	SNP	Missense_Mutation	10	16967642	C	T	29	82
BRCA	TCGA-E9-A22A	GALNTL4	SNP	Missense_Mutation	11	11470443	G	T	45	81
BRCA	TCGA-E9-A22A	OR10G7	SNP	Missense_Mutation	11	123909447	C	T	23	55
BRCA	TCGA-E9-A22A	CTNND1	SNP	Silent	11	57569469	C	G	29	61
BRCA	TCGA-E9-A22A	CCDC82	DEL	In_Frame_Del	11	96117385	TCT	-	58	50
BRCA	TCGA-E9-A22A	KSR2	SNP	Silent	12	117962830	G	A	40	48
BRCA	TCGA-E9-A22A	KIAA1024	SNP	Silent	15	79748798	G	A	33	55
BRCA	TCGA-E9-A22A	GTF3C1	SNP	Missense_Mutation	16	27517273	T	A	55	53
BRCA	TCGA-E9-A22A	MYLK3	SNP	Silent	16	46764603	A	G	10	50
BRCA	TCGA-E9-A22A	ZNF431	SNP	Missense_Mutation	19	21365903	G	C	42	69
BRCA	TCGA-E9-A22A	LPIN1	SNP	Missense_Mutation	2	11959665	A	G	5	79
BRCA	TCGA-E9-A22A	DIP2A	SNP	Missense_Mutation	21	47931375	C	G	19	52
BRCA	TCGA-E9-A22A	BHLHB9	SNP	Silent	23	102004787	C	T	25	50
BRCA	TCGA-E9-A22A	MUM1L1	SNP	Missense_Mutation	23	105450851	T	G	53	66
BRCA	TCGA-E9-A22A	SLC7A14	SNP	Missense_Mutation	3	170184915	C	G	32	56
BRCA	TCGA-E9-A22A	STAB1	SNP	Nonsense_Mutation	3	52544484	C	A	26	75
BRCA	TCGA-E9-A22A	ANK2	SNP	Missense_Mutation	4	114153390	G	C	41	78
BRCA	TCGA-E9-A22A	CTAGE4	SNP	Missense_Mutation	7	143882673	C	T	24	38
BRCA	TCGA-E9-A22A	AVL9	SNP	Missense_Mutation	7	32590994	T	G	49	92
BRCA	TCGA-E9-A22A	SLC39A4	SNP	Missense_Mutation	8	145640174	T	A	55	56
BRCA	TCGA-E9-A22B	PKLR	SNP	Missense_Mutation	1	155261573	C	T	27	68
BRCA	TCGA-E9-A22B	KCNH1	SNP	Missense_Mutation	1	210948878	C	T	32	87
BRCA	TCGA-E9-A22B	GALNT2	SNP	Missense_Mutation	1	230313974	A	G	4	73
BRCA	TCGA-E9-A22B	LZTS2	SNP	Missense_Mutation	10	102763412	C	T	24	74
BRCA	TCGA-E9-A22B	ZFAND4	SNP	Missense_Mutation	10	46121562	A	G	3	85
BRCA	TCGA-E9-A22B	AGAP4	SNP	Silent	10	46342649	T	C	57	51
BRCA	TCGA-E9-A22B	PRKCQ	SNP	Missense_Mutation	10	6520982	G	A	40	84
BRCA	TCGA-E9-A22B	TCN1	SNP	Missense_Mutation	11	59626616	C	G	32	54
BRCA	TCGA-E9-A22B	CD248	SNP	Missense_Mutation	11	66083729	C	T	27	61
BRCA	TCGA-E9-A22B	GUCY2C	SNP	Silent	12	14798208	G	A	45	57
BRCA	TCGA-E9-A22B	CNTN1	SNP	Missense_Mutation	12	41419093	T	A	59	66
BRCA	TCGA-E9-A22B	LEPREL2	SNP	Missense_Mutation	12	6948564	G	A	38	37
BRCA	TCGA-E9-A22B	NR2C1	SNP	Missense_Mutation	12	95445620	T	G	52	54
BRCA	TCGA-E9-A22B	OR11G2	SNP	Missense_Mutation	14	20666089	G	A	40	50
BRCA	TCGA-E9-A22B	KCNH5	SNP	Missense_Mutation	14	63174294	A	G	8	60
BRCA	TCGA-E9-A22B	SLC10A1	SNP	Silent	14	70245985	T	G	59	48
BRCA	TCGA-E9-A22B	FLRT2	SNP	Missense_Mutation	14	86089456	C	T	19	89
BRCA	TCGA-E9-A22B	HDGFRP3	SNP	Missense_Mutation	15	83826259	C	T	29	83
BRCA	TCGA-E9-A22B	ZNF592	SNP	Missense_Mutation	15	85334047	C	T	23	82
BRCA	TCGA-E9-A22B	NOXO1	SNP	Silent	16	2029885	G	A	40	48
BRCA	TCGA-E9-A22B	AP1G1	SNP	Silent	16	71798295	C	T	23	33
BRCA	TCGA-E9-A22B	PRKAR1A	SNP	Nonsense_Mutation	17	66511664	C	T	31	60
BRCA	TCGA-E9-A22B	DSC2	SNP	Missense_Mutation	18	28667707	C	T	32	86
BRCA	TCGA-E9-A22B	KIAA1468	SNP	Silent	18	59895751	A	T	8	49
BRCA	TCGA-E9-A22B	ELOF1	SNP	Missense_Mutation	19	11664586	T	A	58	84
BRCA	TCGA-E9-A22B	CYP2A13	SNP	Silent	19	41596358	C	A	29	62
BRCA	TCGA-E9-A22B	ZNF677	SNP	Silent	19	53740447	T	A	54	47
BRCA	TCGA-E9-A22B	ZNF71	SNP	Missense_Mutation	19	57132793	G	C	33	65
BRCA	TCGA-E9-A22B	ZNF773	SNP	Missense_Mutation	19	58017951	T	C	54	48
BRCA	TCGA-E9-A22B	A1BG	SNP	Missense_Mutation	19	58862784	C	T	27	54
BRCA	TCGA-E9-A22B	THSD7B	SNP	Missense_Mutation	2	137928463	G	C	47	88
BRCA	TCGA-E9-A22B	POLR1A	DEL	Frame_Shift_Del	2	86292474	GTCCTCG	-	36	98
BRCA	TCGA-E9-A22B	RBPJL	SNP	Missense_Mutation	20	43940867	G	A	39	58
BRCA	TCGA-E9-A22B	SLC12A5	SNP	Missense_Mutation	20	44680441	C	G	20	91
BRCA	TCGA-E9-A22B	C21orf91	SNP	Missense_Mutation	21	19169225	G	A	33	65
BRCA	TCGA-E9-A22B	HMOX1	SNP	Silent	22	35789489	G	A	41	46
BRCA	TCGA-E9-A22B	TMLHE	SNP	Silent	23	154743676	C	T	32	49
BRCA	TCGA-E9-A22B	PRICKLE3	SNP	Nonsense_Mutation	23	49034759	G	T	34	54
BRCA	TCGA-E9-A22B	LAS1L	SNP	Missense_Mutation	23	64754390	G	A	38	77
BRCA	TCGA-E9-A22B	NUP210	SNP	Missense_Mutation	3	13364872	A	C	3	64
BRCA	TCGA-E9-A22B	MED12L	SNP	Missense_Mutation	3	151134206	C	T	22	79
BRCA	TCGA-E9-A22B	SLC22A14	SNP	Silent	3	38357875	A	T	5	34
BRCA	TCGA-E9-A22B	SPINK8	SNP	Missense_Mutation	3	48351420	T	C	51	48
BRCA	TCGA-E9-A22B	CEP44	SNP	Silent	4	175224964	G	C	45	50
BRCA	TCGA-E9-A22B	GLRA3	SNP	Missense_Mutation	4	175598272	G	A	40	99
BRCA	TCGA-E9-A22B	ADAMTS12	SNP	Missense_Mutation	5	33614429	T	G	64	79
BRCA	TCGA-E9-A22B	EPB41L2	SNP	Missense_Mutation	6	131184781	G	C	44	54
BRCA	TCGA-E9-A22B	RNF182	SNP	Missense_Mutation	6	13977576	G	A	45	83
BRCA	TCGA-E9-A22B	KCNK16	SNP	Silent	6	39284658	T	G	59	42
BRCA	TCGA-E9-A22B	TFEB	SNP	Silent	6	41658742	C	T	29	48
BRCA	TCGA-E9-A22B	EYS	SNP	Missense_Mutation	6	64487930	C	T	21	76
BRCA	TCGA-E9-A22B	RINT1	SNP	Missense_Mutation	7	105205897	A	G	14	68
BRCA	TCGA-E9-A22B	TMEM168	SNP	Silent	7	112424725	T	C	49	47
BRCA	TCGA-E9-A22B	GCC1	SNP	Silent	7	127224901	A	C	6	50
BRCA	TCGA-E9-A22B	MGAM	SNP	Splice_Site	7	141781840	A	C	7	89
BRCA	TCGA-E9-A22B	KLHL7	SNP	Silent	7	23213659	C	T	19	44
BRCA	TCGA-E9-A22B	CSMD3	SNP	Missense_Mutation	8	113988224	C	T	31	67
BRCA	TCGA-E9-A22B	MCMDC2	SNP	Missense_Mutation	8	67796162	C	G	23	48
BRCA	TCGA-E9-A22B	ZFHX4	SNP	Missense_Mutation	8	77765416	C	A	25	80
BRCA	TCGA-E9-A22D	DUSP10	DEL	In_Frame_Del	1	221912854	GCACTGCTGCAT	-	42	98
BRCA	TCGA-E9-A22D	WDR11	SNP	Missense_Mutation	10	122618231	A	G	4	57
BRCA	TCGA-E9-A22D	GATA3	INS	Frame_Shift_Ins	10	8115874	-	T	31	85
BRCA	TCGA-E9-A22D	ANKS4B	SNP	Silent	16	21261658	C	T	19	49
BRCA	TCGA-E9-A22D	ABCA3	SNP	Missense_Mutation	16	2335501	C	A	21	92
BRCA	TCGA-E9-A22D	MYH4	SNP	Missense_Mutation	17	10358322	G	A	38	72
BRCA	TCGA-E9-A22D	TCEB3B	SNP	Missense_Mutation	18	44560939	C	G	30	62
BRCA	TCGA-E9-A22D	OR7C2	SNP	Silent	19	15052846	C	T	23	30
BRCA	TCGA-E9-A22D	FAM71E2	SNP	Splice_Site	19	55874336	G	A	38	52
BRCA	TCGA-E9-A22D	ZSCAN5B	SNP	Silent	19	56703240	G	A	37	49
BRCA	TCGA-E9-A22D	PEG3	SNP	Missense_Mutation	19	57328299	C	T	19	53
BRCA	TCGA-E9-A22D	BRE	SNP	Missense_Mutation	2	28521330	G	A	41	100
BRCA	TCGA-E9-A22D	PLCXD1	SNP	Missense_Mutation	23	215818	C	T	27	53
BRCA	TCGA-E9-A22D	STARD8	SNP	Splice_Site	23	67935135	G	C	33	86
BRCA	TCGA-E9-A22D	KCNMB2	SNP	Missense_Mutation	3	178560711	C	T	19	62
BRCA	TCGA-E9-A22D	XIRP1	SNP	Missense_Mutation	3	39229655	C	T	25	50
BRCA	TCGA-E9-A22D	CCR2	SNP	Nonsense_Mutation	3	46400009	C	T	17	65
BRCA	TCGA-E9-A22D	TLR3	DEL	Frame_Shift_Del	4	187005157	CATTT	-	17	50
BRCA	TCGA-E9-A22D	KIAA1239	SNP	Silent	4	37448092	C	T	31	30
BRCA	TCGA-E9-A22D	FIP1L1	SNP	Missense_Mutation	4	54319278	C	T	30	85
BRCA	TCGA-E9-A22D	LMTK2	SNP	Silent	7	97822732	A	C	6	18
BRCA	TCGA-E9-A22D	DOLPP1	SNP	Missense_Mutation	9	131848528	T	G	62	88
BRCA	TCGA-E9-A22D	CNTNAP3	SNP	Silent	9	39103829	G	A	40	50
BRCA	TCGA-E9-A22D	NTRK2	SNP	Missense_Mutation	9	87285830	C	T	23	83
BRCA	TCGA-E9-A22E	FCRL3	SNP	Missense_Mutation	1	157648560	T	A	56	52
BRCA	TCGA-E9-A22E	ADCY10	SNP	Missense_Mutation	1	167787330	T	A	55	51
BRCA	TCGA-E9-A22E	CROCC	SNP	Silent	1	17264148	G	C	47	56
BRCA	TCGA-E9-A22E	ZNF642	SNP	Missense_Mutation	1	40960790	T	A	56	52
BRCA	TCGA-E9-A22E	NPHP4	SNP	Missense_Mutation	1	5923388	G	C	33	52
BRCA	TCGA-E9-A22E	C1orf173	SNP	Missense_Mutation	1	75037611	T	A	56	55
BRCA	TCGA-E9-A22E	GBP4	SNP	Silent	1	89660995	C	G	21	49
BRCA	TCGA-E9-A22E	RET	SNP	Silent	10	43607665	T	C	51	50
BRCA	TCGA-E9-A22E	ANK3	SNP	Silent	10	61822913	C	A	32	97
BRCA	TCGA-E9-A22E	AASDHPPT	SNP	Missense_Mutation	11	105962133	G	C	41	71
BRCA	TCGA-E9-A22E	ANKK1	SNP	Missense_Mutation	11	113264435	C	G	26	74
BRCA	TCGA-E9-A22E	SRPR	SNP	Missense_Mutation	11	126133861	G	C	35	99
BRCA	TCGA-E9-A22E	UBE2L6	SNP	Missense_Mutation	11	57322087	G	C	41	100
BRCA	TCGA-E9-A22E	RTN3	DEL	Splice_site	11	63523641	AAGT	-	1	85
BRCA	TCGA-E9-A22E	C12orf75	SNP	Missense_Mutation	12	105760448	C	G	30	78
BRCA	TCGA-E9-A22E	BIN2	SNP	Missense_Mutation	12	51693051	C	A	28	97
BRCA	TCGA-E9-A22E	KLHL1	SNP	Silent	13	70535549	A	G	4	75
BRCA	TCGA-E9-A22E	PCK2	SNP	Missense_Mutation	14	24572061	C	A	22	80
BRCA	TCGA-E9-A22E	PTGER2	SNP	Silent	14	52793971	A	C	9	50
BRCA	TCGA-E9-A22E	RYR3	SNP	Missense_Mutation	15	33928672	G	T	45	64
BRCA	TCGA-E9-A22E	STARD9	SNP	Missense_Mutation	15	42977487	C	G	18	49
BRCA	TCGA-E9-A22E	CKMT1B	SNP	Missense_Mutation	15	43890514	C	G	24	58
BRCA	TCGA-E9-A22E	IREB2	SNP	Missense_Mutation	15	78790455	A	C	16	52
BRCA	TCGA-E9-A22E	CRYM	SNP	Silent	16	21288827	G	A	38	58
BRCA	TCGA-E9-A22E	HYDIN	SNP	Silent	16	71101180	T	C	55	49
BRCA	TCGA-E9-A22E	DNAH9	SNP	Splice_Site	17	11597316	G	T	44	93
BRCA	TCGA-E9-A22E	IFT20	SNP	Missense_Mutation	17	26658938	T	A	54	88
BRCA	TCGA-E9-A22E	RAB11FIP4	SNP	Silent	17	29758839	A	G	2	58
BRCA	TCGA-E9-A22E	HOXB3	SNP	Missense_Mutation	17	46629656	C	T	25	58
BRCA	TCGA-E9-A22E	MBTD1	SNP	Silent	17	49270117	G	C	41	56
BRCA	TCGA-E9-A22E	AMZ2	SNP	Silent	17	66253041	G	T	37	36
BRCA	TCGA-E9-A22E	DSG4	SNP	Missense_Mutation	18	28992878	G	A	40	72
BRCA	TCGA-E9-A22E	TRAPPC8	SNP	Nonsense_Mutation	18	29487548	G	A	45	93
BRCA	TCGA-E9-A22E	PALM3	SNP	Silent	19	14165323	T	A	54	26
BRCA	TCGA-E9-A22E	ZNF99	SNP	Silent	19	22939510	C	T	19	19
BRCA	TCGA-E9-A22E	AXL	SNP	Missense_Mutation	19	41736883	A	G	10	74
BRCA	TCGA-E9-A22E	NLRP9	SNP	Missense_Mutation	19	56244393	T	A	52	36
BRCA	TCGA-E9-A22E	TTN	SNP	Silent	2	179471857	G	A	45	63
BRCA	TCGA-E9-A22E	KIF1A	SNP	Missense_Mutation	2	241700197	G	A	42	94
BRCA	TCGA-E9-A22E	STON1-GTF2A1L	SNP	Missense_Mutation	2	48873664	C	T	21	68
BRCA	TCGA-E9-A22E	TMEM18	SNP	Missense_Mutation	2	669836	T	C	57	67
BRCA	TCGA-E9-A22E	CCDC142	SNP	Missense_Mutation	2	74708475	G	C	34	62
BRCA	TCGA-E9-A22E	ESF1	SNP	Missense_Mutation	20	13699616	G	C	37	79
BRCA	TCGA-E9-A22E	BPI	SNP	Missense_Mutation	20	36935973	C	A	26	61
BRCA	TCGA-E9-A22E	SLC12A5	SNP	Missense_Mutation	20	44685909	G	A	47	95
BRCA	TCGA-E9-A22E	FAM65C	SNP	Missense_Mutation	20	49232576	G	A	33	57
BRCA	TCGA-E9-A22E	PPDPF	SNP	Missense_Mutation	20	62152940	C	T	21	79
BRCA	TCGA-E9-A22E	GCFC1	SNP	Missense_Mutation	21	34117167	C	G	30	62
BRCA	TCGA-E9-A22E	AIFM1	SNP	Silent	23	129263589	A	T	6	50
BRCA	TCGA-E9-A22E	ASB9	SNP	Missense_Mutation	23	15262744	A	G	9	59
BRCA	TCGA-E9-A22E	FLNA	SNP	Silent	23	153591108	G	A	40	47
BRCA	TCGA-E9-A22E	GAB3	SNP	Silent	23	153908516	G	T	39	48
BRCA	TCGA-E9-A22E	VCX3A	SNP	Silent	23	6451924	T	C	56	61
BRCA	TCGA-E9-A22E	GPR149	SNP	Missense_Mutation	3	154147332	G	T	35	57
BRCA	TCGA-E9-A22E	MUC4	SNP	Missense_Mutation	3	195505807	G	T	41	50
BRCA	TCGA-E9-A22E	ZNF662	SNP	Missense_Mutation	3	42955921	G	A	41	49
BRCA	TCGA-E9-A22E	PTPRG	SNP	Missense_Mutation	3	62204610	G	C	45	68
BRCA	TCGA-E9-A22E	INTS12	SNP	Missense_Mutation	4	106614625	C	T	29	81
BRCA	TCGA-E9-A22E	DCLK2	SNP	Missense_Mutation	4	151153843	C	G	32	79
BRCA	TCGA-E9-A22E	FBXW7	SNP	Missense_Mutation	4	153250888	C	T	18	100
BRCA	TCGA-E9-A22E	NUDT9	SNP	Missense_Mutation	4	88363019	T	G	56	81
BRCA	TCGA-E9-A22E	DSPP	SNP	Silent	4	88537096	T	C	59	49
BRCA	TCGA-E9-A22E	FAM13B	SNP	Missense_Mutation	5	137292177	C	G	32	89
BRCA	TCGA-E9-A22E	FAM105A	SNP	Missense_Mutation	5	14609028	C	G	32	59
BRCA	TCGA-E9-A22E	MEF2C	SNP	Missense_Mutation	5	88100452	T	A	54	92
BRCA	TCGA-E9-A22E	GPR98	SNP	Silent	5	90049486	C	A	29	48
BRCA	TCGA-E9-A22E	FAM184A	SNP	Missense_Mutation	6	119337997	G	C	36	96
BRCA	TCGA-E9-A22E	SOD2	SNP	Silent	6	160109177	G	A	40	39
BRCA	TCGA-E9-A22E	LRRC16A	SNP	Missense_Mutation	6	25600824	G	T	33	51
BRCA	TCGA-E9-A22E	ZBTB12	SNP	Missense_Mutation	6	31868782	C	A	19	93
BRCA	TCGA-E9-A22E	VIPR2	SNP	Nonsense_Mutation	7	158829459	G	T	44	48
BRCA	TCGA-E9-A22E	SEMA3A	SNP	Missense_Mutation	7	83689801	A	T	7	64
BRCA	TCGA-E9-A22E	KRIT1	SNP	Missense_Mutation	7	91864817	T	C	49	88
BRCA	TCGA-E9-A22E	PALM2-AKAP2	SNP	Missense_Mutation	9	112898669	G	C	33	74
BRCA	TCGA-E9-A22E	SWI5	SNP	Silent	9	131038582	G	A	42	45
BRCA	TCGA-E9-A22E	NUP188	SNP	Silent	9	131760894	G	A	36	63
BRCA	TCGA-E9-A22E	CARD9	SNP	Missense_Mutation	9	139261697	C	T	30	78
BRCA	TCGA-E9-A22E	DNAI1	SNP	Nonsense_Mutation	9	34514510	G	A	47	81
BRCA	TCGA-E9-A22E	ERMP1	SNP	Missense_Mutation	9	5805055	C	A	26	49
BRCA	TCGA-E9-A22E	APBA1	SNP	Missense_Mutation	9	72130950	C	A	31	100
BRCA	TCGA-E9-A22G	PDE4DIP	SNP	Missense_Mutation	1	144931537	G	C	34	95
BRCA	TCGA-E9-A22G	MRPL9	SNP	Missense_Mutation	1	151734858	C	A	32	72
BRCA	TCGA-E9-A22G	RPTN	SNP	Missense_Mutation	1	152129003	T	C	50	50
BRCA	TCGA-E9-A22G	HRNR	SNP	Missense_Mutation	1	152191305	G	T	45	58
BRCA	TCGA-E9-A22G	FLG	SNP	Missense_Mutation	1	152279627	C	G	32	50
BRCA	TCGA-E9-A22G	ASH1L	SNP	Missense_Mutation	1	155313997	C	T	31	99
BRCA	TCGA-E9-A22G	PRCC	SNP	Missense_Mutation	1	156737604	C	T	23	80
BRCA	TCGA-E9-A22G	LRRC71	SNP	Silent	1	156901797	C	A	30	59
BRCA	TCGA-E9-A22G	SLAMF7	DEL	Frame_Shift_Del	1	160718165	GAGAG	-	33	50
BRCA	TCGA-E9-A22G	SLAMF7	INS	In_Frame_Ins	1	160718170	-	TCC	57	70
BRCA	TCGA-E9-A22G	C1orf129	SNP	Missense_Mutation	1	170959084	C	A	17	58
BRCA	TCGA-E9-A22G	SLC30A1	SNP	Silent	1	211749099	A	G	7	48
BRCA	TCGA-E9-A22G	DNAH14	SNP	Missense_Mutation	1	225546213	C	G	18	63
BRCA	TCGA-E9-A22G	C1QC	DEL	Frame_Shift_Del	1	22974188	TGTGGCTGGC	-	59	87
BRCA	TCGA-E9-A22G	MYOM3	SNP	Missense_Mutation	1	24400724	T	C	50	81
BRCA	TCGA-E9-A22G	HDAC1	DEL	Frame_Shift_Del	1	32797806	AG	-	7	50
BRCA	TCGA-E9-A22G	LEPRE1	SNP	Missense_Mutation	1	43220572	T	C	54	73
BRCA	TCGA-E9-A22G	TCTEX1D1	SNP	Missense_Mutation	1	67243066	T	A	56	62
BRCA	TCGA-E9-A22G	FAM22D	SNP	Missense_Mutation	10	89124824	G	C	43	47
BRCA	TCGA-E9-A22G	FAM180B	SNP	Missense_Mutation	11	47608354	G	A	44	49
BRCA	TCGA-E9-A22G	OR4B1	SNP	Missense_Mutation	11	48238902	C	G	26	56
BRCA	TCGA-E9-A22G	LPXN	SNP	Missense_Mutation	11	58317469	A	C	13	92
BRCA	TCGA-E9-A22G	DDB1	SNP	Missense_Mutation	11	61071447	T	G	63	93
BRCA	TCGA-E9-A22G	SLC22A9	SNP	Missense_Mutation	11	63138646	G	A	42	37
BRCA	TCGA-E9-A22G	STARD10	SNP	Silent	11	72492197	G	T	43	54
BRCA	TCGA-E9-A22G	TAS2R10	SNP	Missense_Mutation	12	10978499	T	C	55	50
BRCA	TCGA-E9-A22G	EPS8	SNP	Missense_Mutation	12	15803878	T	A	54	89
BRCA	TCGA-E9-A22G	PLCZ1	SNP	Silent	12	18852863	G	A	33	37
BRCA	TCGA-E9-A22G	FAM60A	SNP	Silent	12	31435670	C	A	25	55
BRCA	TCGA-E9-A22G	ACVR1B	SNP	Nonsense_Mutation	12	52374849	G	A	47	100
BRCA	TCGA-E9-A22G	KCNC2	SNP	Missense_Mutation	12	75444928	T	A	62	92
BRCA	TCGA-E9-A22G	WNK1	SNP	Missense_Mutation	12	994697	T	C	49	63
BRCA	TCGA-E9-A22G	GRK1	SNP	Missense_Mutation	13	114324074	G	C	45	77
BRCA	TCGA-E9-A22G	GRK1	SNP	Missense_Mutation	13	114325949	G	C	33	71
BRCA	TCGA-E9-A22G	GJB6	SNP	Missense_Mutation	13	20797418	A	T	3	79
BRCA	TCGA-E9-A22G	ZC2HC1C	SNP	Silent	14	75537318	C	T	27	49
BRCA	TCGA-E9-A22G	MAP1A	SNP	Missense_Mutation	15	43821506	A	C	3	54
BRCA	TCGA-E9-A22G	GOLGA6A	SNP	Missense_Mutation	15	74368107	G	T	47	56
BRCA	TCGA-E9-A22G	BAIAP3	SNP	Silent	16	1395871	C	T	28	58
BRCA	TCGA-E9-A22G	ZNF785	SNP	Missense_Mutation	16	30593995	C	A	26	50
BRCA	TCGA-E9-A22G	PIEZO1	SNP	Missense_Mutation	16	88805107	G	C	46	39
BRCA	TCGA-E9-A22G	PRDM7	SNP	Missense_Mutation	16	90142278	T	C	58	51
BRCA	TCGA-E9-A22G	MYOCD	SNP	Missense_Mutation	17	12659782	A	G	7	55
BRCA	TCGA-E9-A22G	NCOR1	SNP	Missense_Mutation	17	15942922	A	T	12	51
BRCA	TCGA-E9-A22G	PSMD12	SNP	Missense_Mutation	17	65340892	G	T	33	78
BRCA	TCGA-E9-A22G	QRICH2	SNP	Silent	17	74303558	G	T	45	56
BRCA	TCGA-E9-A22G	TP53	INS	Frame_Shift_Ins	17	7577127	-	A	29	95
BRCA	TCGA-E9-A22G	GUCY2D	SNP	Missense_Mutation	17	7909959	C	A	20	53
BRCA	TCGA-E9-A22G	SIRT7	SNP	Silent	17	79872224	C	G	31	44
BRCA	TCGA-E9-A22G	SMCHD1	SNP	Missense_Mutation	18	2750494	G	C	44	51
BRCA	TCGA-E9-A22G	DNMT1	DEL	Splice_site	19	10277360	TTCTGTCACAGAAGACAAC	-	60	50
BRCA	TCGA-E9-A22G	F2RL3	DEL	Frame_Shift_Del	19	17001200	ACCCGAGCCCCAGCGCCTGGGGC	-	10	56
BRCA	TCGA-E9-A22G	ZNF99	SNP	Silent	19	22939859	A	G	16	56
BRCA	TCGA-E9-A22G	ZBTB32	SNP	Silent	19	36207192	C	T	30	50
BRCA	TCGA-E9-A22G	ZNF569	SNP	Missense_Mutation	19	37904029	T	C	57	56
BRCA	TCGA-E9-A22G	WDR87	SNP	Missense_Mutation	19	38379529	T	A	56	53
BRCA	TCGA-E9-A22G	WDR87	SNP	Silent	19	38380336	G	C	33	52
BRCA	TCGA-E9-A22G	WDR87	SNP	Silent	19	38380480	A	G	8	44
BRCA	TCGA-E9-A22G	PKP4	SNP	Nonsense_Mutation	2	159522952	C	T	23	85
BRCA	TCGA-E9-A22G	ECEL1	SNP	Silent	2	233345461	T	A	59	28
BRCA	TCGA-E9-A22G	HJURP	SNP	Missense_Mutation	2	234750032	T	C	60	48
BRCA	TCGA-E9-A22G	HADHB	SNP	Missense_Mutation	2	26492837	C	A	26	81
BRCA	TCGA-E9-A22G	APLF	SNP	Missense_Mutation	2	68717336	A	C	11	63
BRCA	TCGA-E9-A22G	MYH7B	SNP	Missense_Mutation	20	33584219	C	G	27	84
BRCA	TCGA-E9-A22G	OCSTAMP	SNP	Nonsense_Mutation	20	45174574	G	A	46	61
BRCA	TCGA-E9-A22G	SPO11	SNP	Splice_Site	20	55909042	G	A	35	98
BRCA	TCGA-E9-A22G	TRPM2	SNP	Silent	21	45784057	C	G	22	48
BRCA	TCGA-E9-A22G	ATP6V1E1	SNP	Missense_Mutation	22	18077351	G	A	37	54
BRCA	TCGA-E9-A22G	TOM1	SNP	Silent	22	35729468	C	G	32	60
BRCA	TCGA-E9-A22G	HMOX1	SNP	Silent	22	35779123	C	T	22	66
BRCA	TCGA-E9-A22G	HEPH	SNP	Missense_Mutation	23	65409615	G	A	45	94
BRCA	TCGA-E9-A22G	TMPRSS7	SNP	Silent	3	111795822	C	T	20	67
BRCA	TCGA-E9-A22G	CASR	SNP	Missense_Mutation	3	122002995	A	G	6	92
BRCA	TCGA-E9-A22G	SLITRK3	SNP	Missense_Mutation	3	164905992	C	A	30	78
BRCA	TCGA-E9-A22G	YEATS2	SNP	Missense_Mutation	3	183436340	C	G	25	95
BRCA	TCGA-E9-A22G	ABCC5	SNP	Missense_Mutation	3	183681187	T	C	57	89
BRCA	TCGA-E9-A22G	MUC4	SNP	Missense_Mutation	3	195515927	G	C	47	54
BRCA	TCGA-E9-A22G	SCN10A	SNP	Nonsense_Mutation	3	38802770	G	A	46	98
BRCA	TCGA-E9-A22G	FAT4	SNP	Missense_Mutation	4	126369679	A	G	16	60
BRCA	TCGA-E9-A22G	USO1	SNP	Missense_Mutation	4	76708240	C	T	18	57
BRCA	TCGA-E9-A22G	USO1	SNP	Missense_Mutation	4	76734444	T	C	50	51
BRCA	TCGA-E9-A22G	PKD2	SNP	Splice_Site	4	88940608	A	C	3	81
BRCA	TCGA-E9-A22G	AQPEP	SNP	Missense_Mutation	5	115346461	C	G	17	85
BRCA	TCGA-E9-A22G	HSD17B4	SNP	Missense_Mutation	5	118814681	C	G	27	100
BRCA	TCGA-E9-A22G	TRIM7	SNP	Splice_site	5	180626095	C	T	24	57
BRCA	TCGA-E9-A22G	SLC45A2	SNP	Silent	5	33984320	C	A	22	55
BRCA	TCGA-E9-A22G	HLA-F	SNP	Silent	6	29693318	G	T	45	45
BRCA	TCGA-E9-A22G	NOTCH4	SNP	Missense_Mutation	6	32188059	G	T	36	69
BRCA	TCGA-E9-A22G	NUDT3	SNP	Missense_Mutation	6	34256620	C	G	29	64
BRCA	TCGA-E9-A22G	C6orf165	SNP	Missense_Mutation	6	88144769	C	A	29	67
BRCA	TCGA-E9-A22G	KLRG2	SNP	Missense_Mutation	7	139138880	G	C	40	35
BRCA	TCGA-E9-A22G	ERV3-1	DEL	In_Frame_Del	7	64453317	GGAGGCATCCCTCCC	-	47	52
BRCA	TCGA-E9-A22G	DLX6	SNP	Silent	7	96639203	G	A	39	46
BRCA	TCGA-E9-A22G	FAM160B2	SNP	Splice_Site	8	21951949	A	G	7	83
BRCA	TCGA-E9-A22G	EPHX2	SNP	Silent	8	27369412	G	C	44	37
BRCA	TCGA-E9-A22G	HNF4G	SNP	Silent	8	76465339	T	C	59	66
BRCA	TCGA-E9-A22G	FCN1	SNP	Silent	9	137804958	C	T	22	43
BRCA	TCGA-E9-A22G	WNK2	DEL	Frame_Shift_Del	9	96002071	TCTTC	-	62	89
BRCA	TCGA-E9-A22G	WNK2	DEL	In_Frame_Del	9	96002077	CAGAGGACA	-	25	98
BRCA	TCGA-E9-A22H	EYA3	SNP	Missense_Mutation	1	28304975	G	C	34	72
BRCA	TCGA-E9-A22H	DHCR24	SNP	Missense_Mutation	1	55331049	C	T	31	45
BRCA	TCGA-E9-A22H	WSCD2	SNP	Missense_Mutation	12	108626636	G	A	47	94
BRCA	TCGA-E9-A22H	ASIC1	SNP	Missense_Mutation	12	50452677	G	A	39	83
BRCA	TCGA-E9-A22H	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-E9-A22H	VPS13C	SNP	Missense_Mutation	15	62214879	G	A	40	51
BRCA	TCGA-E9-A22H	CCDC135	SNP	Missense_Mutation	16	57760065	G	A	38	59
BRCA	TCGA-E9-A22H	TAT	INS	Frame_Shift_Ins	16	71603760	-	AGGT	45	51
BRCA	TCGA-E9-A22H	CLEC10A	SNP	Missense_Mutation	17	6979420	C	G	17	42
BRCA	TCGA-E9-A22H	SETBP1	INS	Frame_Shift_Ins	18	42456670	-	TCTT	29	24
BRCA	TCGA-E9-A22H	CASP8	SNP	Missense_Mutation	2	202141586	C	T	31	66
BRCA	TCGA-E9-A22H	MED12	INS	Frame_Shift_Ins	23	70356283	-	CA	18	55
BRCA	TCGA-E9-A22H	ADAM29	SNP	Missense_Mutation	4	175897839	C	G	17	35
BRCA	TCGA-E9-A22H	MAP3K1	SNP	Missense_Mutation	5	56161678	A	G	16	86
BRCA	TCGA-E9-A22H	HDDC2	SNP	Missense_Mutation	6	125598270	T	A	56	49
BRCA	TCGA-E9-A22H	F13A1	SNP	Missense_Mutation	6	6182361	A	T	11	77
BRCA	TCGA-E9-A22H	UFL1	SNP	Missense_Mutation	6	96990799	G	A	47	73
BRCA	TCGA-E9-A22H	SRRT	SNP	Missense_Mutation	7	100485396	G	A	38	80
BRCA	TCGA-E9-A22H	MDFIC	INS	Frame_Shift_Ins	7	114619630	-	A	49	64
BRCA	TCGA-E9-A22H	FAM120A	SNP	Silent	9	96294650	A	G	14	53
BRCA	TCGA-E9-A243	CA14	SNP	Missense_Mutation	1	150230552	T	A	59	60
BRCA	TCGA-E9-A243	HRNR	SNP	Nonsense_Mutation	1	152192919	G	A	45	49
BRCA	TCGA-E9-A243	RD3	SNP	Silent	1	211652657	C	T	25	49
BRCA	TCGA-E9-A243	PIK3CD	SNP	Missense_Mutation	1	9781585	T	C	62	91
BRCA	TCGA-E9-A243	OPTN	SNP	Silent	10	13174129	A	G	1	57
BRCA	TCGA-E9-A243	TRAF6	SNP	Missense_Mutation	11	36518707	T	C	55	69
BRCA	TCGA-E9-A243	PICALM	SNP	Nonsense_Mutation	11	85722144	C	A	32	100
BRCA	TCGA-E9-A243	BTBD11	SNP	Silent	12	108012010	C	A	23	47
BRCA	TCGA-E9-A243	NOS1	SNP	Missense_Mutation	12	117696222	G	T	36	64
BRCA	TCGA-E9-A243	KSR2	SNP	Missense_Mutation	12	117977596	T	C	53	91
BRCA	TCGA-E9-A243	SCAF11	SNP	Missense_Mutation	12	46320764	G	A	41	77
BRCA	TCGA-E9-A243	EEA1	DEL	In_Frame_Del	12	93221730	TTG	-	56	56
BRCA	TCGA-E9-A243	PRTG	SNP	Missense_Mutation	15	55912380	G	T	43	81
BRCA	TCGA-E9-A243	RNF111	SNP	Missense_Mutation	15	59323149	T	A	52	88
BRCA	TCGA-E9-A243	PARP6	SNP	Missense_Mutation	15	72546845	C	G	23	96
BRCA	TCGA-E9-A243	APOBR	SNP	Silent	16	28507082	G	C	43	51
BRCA	TCGA-E9-A243	C16orf53	SNP	Missense_Mutation	16	29828128	G	C	35	54
BRCA	TCGA-E9-A243	TAT	SNP	Missense_Mutation	16	71610261	C	T	19	53
BRCA	TCGA-E9-A243	TRPV2	SNP	Missense_Mutation	17	16326827	G	A	48	55
BRCA	TCGA-E9-A243	GH1	SNP	Silent	17	61994783	G	A	40	37
BRCA	TCGA-E9-A243	TP53	SNP	Missense_Mutation	17	7578190	T	G	49	88
BRCA	TCGA-E9-A243	TP53	SNP	Nonsense_Mutation	17	7579414	C	T	26	75
BRCA	TCGA-E9-A243	WDR87	SNP	Missense_Mutation	19	38380815	C	T	27	50
BRCA	TCGA-E9-A243	EIF5B	SNP	Missense_Mutation	2	100007074	G	C	41	88
BRCA	TCGA-E9-A243	FMNL2	SNP	Missense_Mutation	2	153435429	C	G	30	100
BRCA	TCGA-E9-A243	WDSUB1	SNP	Missense_Mutation	2	160139361	T	C	60	92
BRCA	TCGA-E9-A243	XIRP2	SNP	Missense_Mutation	2	168101752	T	A	64	60
BRCA	TCGA-E9-A243	ANKRD44	SNP	Missense_Mutation	2	197865158	C	G	32	55
BRCA	TCGA-E9-A243	FLRT3	SNP	Missense_Mutation	20	14307453	G	A	38	65
BRCA	TCGA-E9-A243	CPNE1	SNP	Missense_Mutation	20	34218833	C	T	30	85
BRCA	TCGA-E9-A243	ACTR5	SNP	Silent	20	37380924	C	A	31	29
BRCA	TCGA-E9-A243	NDUFV3	SNP	Missense_Mutation	21	44323603	G	A	45	63
BRCA	TCGA-E9-A243	GPRASP1	SNP	Missense_Mutation	23	101910990	G	A	33	55
BRCA	TCGA-E9-A243	PLP1	SNP	Missense_Mutation	23	103044308	C	A	25	76
BRCA	TCGA-E9-A243	DOCK11	SNP	Missense_Mutation	23	117743298	G	C	33	66
BRCA	TCGA-E9-A243	CUL4B	SNP	Missense_Mutation	23	119673224	T	A	56	89
BRCA	TCGA-E9-A243	RPGR	SNP	Missense_Mutation	23	38145826	T	C	54	52
BRCA	TCGA-E9-A243	PQBP1	SNP	Silent	23	48759291	G	C	39	52
BRCA	TCGA-E9-A243	WNK3	SNP	Missense_Mutation	23	54259337	G	C	47	52
BRCA	TCGA-E9-A243	ATR	SNP	Missense_Mutation	3	142274964	T	A	50	66
BRCA	TCGA-E9-A243	OTOL1	SNP	Missense_Mutation	3	161221388	G	T	33	64
BRCA	TCGA-E9-A243	MUC4	SNP	Silent	3	195506517	G	A	47	44
BRCA	TCGA-E9-A243	DOCK3	DEL	In_Frame_Del	3	51418700	GTCCACTACAGCCTCTCTGAGTCTGCC	-	48	82
BRCA	TCGA-E9-A243	DNAH12	SNP	Missense_Mutation	3	57394164	C	T	19	99
BRCA	TCGA-E9-A243	PXK	SNP	Missense_Mutation	3	58368396	A	C	15	53
BRCA	TCGA-E9-A243	SMAD1	SNP	Missense_Mutation	4	146467997	G	C	33	68
BRCA	TCGA-E9-A243	FSTL4	SNP	Missense_Mutation	5	132652191	G	C	46	51
BRCA	TCGA-E9-A243	KIAA0947	SNP	Missense_Mutation	5	5464537	C	T	32	63
BRCA	TCGA-E9-A243	PTPRK	SNP	Nonsense_Mutation	6	128404925	C	A	29	89
BRCA	TCGA-E9-A243	BACH2	SNP	Missense_Mutation	6	90660867	G	A	43	55
BRCA	TCGA-E9-A243	EPHA1	SNP	Missense_Mutation	7	143091403	C	G	29	98
BRCA	TCGA-E9-A243	TAF6	SNP	Silent	7	99711749	G	A	37	47
BRCA	TCGA-E9-A243	BAG4	SNP	Silent	8	38067546	C	T	26	61
BRCA	TCGA-E9-A243	ZFAND1	SNP	Silent	8	82626198	C	T	29	53
BRCA	TCGA-E9-A243	TBC1D2	SNP	Missense_Mutation	9	101006381	A	T	7	59
BRCA	TCGA-E9-A243	RNF20	SNP	Missense_Mutation	9	104315014	A	G	1	84
BRCA	TCGA-E9-A243	CTNNAL1	SNP	Missense_Mutation	9	111775599	G	C	36	57
BRCA	TCGA-E9-A243	TBC1D13	SNP	Missense_Mutation	9	131568232	G	C	47	98
BRCA	TCGA-E9-A243	TPM2	SNP	Silent	9	35689719	A	G	7	45
BRCA	TCGA-E9-A244	TCHH	SNP	Missense_Mutation	1	152080781	G	A	39	58
BRCA	TCGA-E9-A244	TCHH	SNP	Missense_Mutation	1	152081930	C	T	32	49
BRCA	TCGA-E9-A244	LCE3A	SNP	Silent	1	152595499	T	G	55	50
BRCA	TCGA-E9-A244	IQGAP3	SNP	Missense_Mutation	1	156532441	T	A	55	48
BRCA	TCGA-E9-A244	FCER1A	SNP	Missense_Mutation	1	159273897	G	A	45	46
BRCA	TCGA-E9-A244	KCNJ10	SNP	Silent	1	160011189	A	G	8	38
BRCA	TCGA-E9-A244	ATP1A4	SNP	Silent	1	160145985	C	A	22	51
BRCA	TCGA-E9-A244	ADCY10	SNP	Missense_Mutation	1	167778922	T	G	51	59
BRCA	TCGA-E9-A244	PAPPA2	SNP	Missense_Mutation	1	176564589	C	T	23	86
BRCA	TCGA-E9-A244	FAM5C	SNP	Missense_Mutation	1	190067723	A	C	3	86
BRCA	TCGA-E9-A244	PPP1R15B	SNP	Missense_Mutation	1	204379798	C	G	20	68
BRCA	TCGA-E9-A244	CSMD2	SNP	Missense_Mutation	1	34498201	A	G	15	79
BRCA	TCGA-E9-A244	COL9A2	SNP	Missense_Mutation	1	40776400	T	A	51	80
BRCA	TCGA-E9-A244	ZNF511	SNP	Silent	10	135165568	G	T	48	45
BRCA	TCGA-E9-A244	ZNF511	SNP	Silent	10	135165631	C	T	26	45
BRCA	TCGA-E9-A244	CUBN	DEL	Frame_Shift_Del	10	16960761	TCCACTCCATCCC	-	50	77
BRCA	TCGA-E9-A244	USP28	SNP	Missense_Mutation	11	113704197	G	A	39	95
BRCA	TCGA-E9-A244	CBL	SNP	Silent	11	119170209	C	A	29	53
BRCA	TCGA-E9-A244	OR8B2	SNP	Silent	11	124252388	G	A	45	46
BRCA	TCGA-E9-A244	TMEM218	INS	Frame_Shift_Ins	11	124971139	-	A	41	49
BRCA	TCGA-E9-A244	KCNA4	SNP	Missense_Mutation	11	30033730	A	T	15	89
BRCA	TCGA-E9-A244	KIAA1549L	SNP	Missense_Mutation	11	33596315	A	G	2	89
BRCA	TCGA-E9-A244	RCOR2	SNP	Missense_Mutation	11	63681469	G	T	40	74
BRCA	TCGA-E9-A244	EHD1	SNP	Silent	11	64622246	G	A	40	51
BRCA	TCGA-E9-A244	HCFC2	SNP	Missense_Mutation	12	104459971	G	C	48	96
BRCA	TCGA-E9-A244	NOS1	SNP	Silent	12	117691526	G	T	35	38
BRCA	TCGA-E9-A244	NCKAP5L	SNP	Silent	12	50188850	C	A	29	49
BRCA	TCGA-E9-A244	KRT76	SNP	Missense_Mutation	12	53169205	C	T	28	50
BRCA	TCGA-E9-A244	PTPRB	SNP	Missense_Mutation	12	70970306	C	G	23	47
BRCA	TCGA-E9-A244	C12orf74	SNP	Silent	12	93100671	G	A	46	47
BRCA	TCGA-E9-A244	PCNXL4	SNP	Missense_Mutation	14	60592455	A	C	8	68
BRCA	TCGA-E9-A244	SPTB	SNP	Splice_Site	14	65267588	T	G	55	90
BRCA	TCGA-E9-A244	ADAM20	SNP	Missense_Mutation	14	70989944	G	T	47	70
BRCA	TCGA-E9-A244	DICER1	SNP	Missense_Mutation	14	95582139	G	C	41	99
BRCA	TCGA-E9-A244	PCSK6	SNP	Nonsense_Mutation	15	101910615	G	T	45	76
BRCA	TCGA-E9-A244	CHRFAM7A	SNP	Missense_Mutation	15	30664509	A	C	6	80
BRCA	TCGA-E9-A244	IGFALS	SNP	Silent	16	1840820	C	T	21	26
BRCA	TCGA-E9-A244	ZP2	SNP	Silent	16	21221500	G	A	38	56
BRCA	TCGA-E9-A244	SLC38A7	SNP	Missense_Mutation	16	58712260	C	A	32	87
BRCA	TCGA-E9-A244	P2RX5	SNP	Missense_Mutation	17	3593780	C	G	21	38
BRCA	TCGA-E9-A244	RHBDF2	SNP	Nonsense_Mutation	17	74469974	C	A	30	100
BRCA	TCGA-E9-A244	TP53	SNP	Missense_Mutation	17	7578406	C	T	27	97
BRCA	TCGA-E9-A244	DCC	SNP	Missense_Mutation	18	50918111	G	T	36	98
BRCA	TCGA-E9-A244	CDH19	SNP	Silent	18	64239349	G	A	45	31
BRCA	TCGA-E9-A244	CNDP1	SNP	Missense_Mutation	18	72245522	G	A	40	100
BRCA	TCGA-E9-A244	ZNF44	SNP	Missense_Mutation	19	12384316	G	A	44	68
BRCA	TCGA-E9-A244	RYR1	SNP	Missense_Mutation	19	38979876	G	T	35	57
BRCA	TCGA-E9-A244	SHISA7	SNP	Silent	19	55952018	C	T	27	45
BRCA	TCGA-E9-A244	ZNF552	SNP	Missense_Mutation	19	58319711	G	T	48	46
BRCA	TCGA-E9-A244	ACTL9	SNP	Missense_Mutation	19	8808585	G	C	42	66
BRCA	TCGA-E9-A244	STAM2	SNP	Missense_Mutation	2	153000517	T	A	49	54
BRCA	TCGA-E9-A244	CASP8	SNP	Missense_Mutation	2	202149905	C	T	19	47
BRCA	TCGA-E9-A244	C2orf71	SNP	Missense_Mutation	2	29295725	T	C	59	50
BRCA	TCGA-E9-A244	RTN4	SNP	Missense_Mutation	2	55252437	C	G	20	41
BRCA	TCGA-E9-A244	MRPS5	SNP	Silent	2	95775737	T	C	54	51
BRCA	TCGA-E9-A244	FRG1B	SNP	Missense_Mutation	20	29624068	T	C	51	63
BRCA	TCGA-E9-A244	MMP9	SNP	Silent	20	44639885	C	T	19	53
BRCA	TCGA-E9-A244	ETS2	SNP	Nonsense_Mutation	21	40191520	T	A	63	93
BRCA	TCGA-E9-A244	COL18A1	SNP	Silent	21	46925826	G	C	47	48
BRCA	TCGA-E9-A244	PEX26	SNP	Missense_Mutation	22	18562666	G	C	48	87
BRCA	TCGA-E9-A244	ELFN2	SNP	Missense_Mutation	22	37771398	G	T	44	85
BRCA	TCGA-E9-A244	PDGFB	SNP	Missense_Mutation	22	39621808	G	A	39	79
BRCA	TCGA-E9-A244	FATE1	SNP	Splice_site	23	150889973	G	C	39	51
BRCA	TCGA-E9-A244	ATP13A4	SNP	Splice_Site	3	193182727	A	T	14	93
BRCA	TCGA-E9-A244	LRRC15	SNP	Missense_Mutation	3	194081730	C	T	28	60
BRCA	TCGA-E9-A244	ARPP21	SNP	Silent	3	35725220	A	G	7	58
BRCA	TCGA-E9-A244	SETD2	SNP	Missense_Mutation	3	47164556	T	G	64	70
BRCA	TCGA-E9-A244	DOCK3	SNP	Missense_Mutation	3	51263131	G	C	33	84
BRCA	TCGA-E9-A244	FREM3	SNP	Splice_site	4	144548913	C	A	30	64
BRCA	TCGA-E9-A244	LRRC66	SNP	Silent	4	52861775	A	T	7	43
BRCA	TCGA-E9-A244	PCDHA1	SNP	Missense_Mutation	5	140167566	C	T	27	54
BRCA	TCGA-E9-A244	SLC36A1	SNP	Nonsense_Mutation	5	150846797	G	T	43	99
BRCA	TCGA-E9-A244	SLC9A3	SNP	Missense_Mutation	5	485334	C	T	17	92
BRCA	TCGA-E9-A244	NOTCH4	SNP	Missense_Mutation	6	32188550	C	A	25	93
BRCA	TCGA-E9-A244	SCUBE3	SNP	Silent	6	35213839	C	T	22	53
BRCA	TCGA-E9-A244	DST	SNP	Missense_Mutation	6	56473334	G	C	36	62
BRCA	TCGA-E9-A244	TMEM120A	DEL	Splice_Site	7	75616520	GTGAAACTTGTGGTGCACAACCCTCAGG	-	48	49
BRCA	TCGA-E9-A244	GLCCI1	SNP	Missense_Mutation	7	8126035	C	T	19	75
BRCA	TCGA-E9-A244	PEX1	SNP	Missense_Mutation	7	92122328	G	C	34	100
BRCA	TCGA-E9-A244	DLC1	INS	Frame_Shift_Ins	8	12956004	-	T	33	99
BRCA	TCGA-E9-A244	EEF1D	SNP	Silent	8	144662368	A	G	8	49
BRCA	TCGA-E9-A245	VPS13D	SNP	Splice_Site	1	12409220	G	A	33	99
BRCA	TCGA-E9-A245	ARNT	SNP	Missense_Mutation	1	150786681	G	T	36	89
BRCA	TCGA-E9-A245	CGN	SNP	Missense_Mutation	1	151502487	C	T	23	49
BRCA	TCGA-E9-A245	ZC3H12A	SNP	Missense_Mutation	1	37948869	C	G	26	66
BRCA	TCGA-E9-A245	CLCA4	SNP	Silent	1	87031586	T	G	55	51
BRCA	TCGA-E9-A245	GATA3	INS	Frame_Shift_Ins	10	8115928	-	AT	21	98
BRCA	TCGA-E9-A245	TMPRSS13	DEL	In_Frame_Del	11	117789313	GGGCTGGAGATGCCT	-	39	41
BRCA	TCGA-E9-A245	MUC5B	SNP	Silent	11	1261520	C	A	29	47
BRCA	TCGA-E9-A245	NOP9	INS	In_Frame_Ins	14	24769849	-	GAGGAG	7	43
BRCA	TCGA-E9-A245	DLGAP5	SNP	Splice_Site	14	55647930	C	A	18	75
BRCA	TCGA-E9-A245	TMEM251	SNP	Silent	14	93652791	C	T	20	61
BRCA	TCGA-E9-A245	N4BP1	SNP	Silent	16	48596338	G	T	33	67
BRCA	TCGA-E9-A245	INCA1	SNP	Silent	17	4892728	G	T	45	51
BRCA	TCGA-E9-A245	SP3	SNP	Missense_Mutation	2	174777831	C	A	29	100
BRCA	TCGA-E9-A245	WFDC10A	DEL	Frame_Shift_Del	20	44258485	TCTCTGTG	-	62	40
BRCA	TCGA-E9-A245	DOCK11	SNP	Nonsense_Mutation	23	117722171	G	T	45	81
BRCA	TCGA-E9-A245	ASTE1	INS	Frame_Shift_Ins	3	130733046	-	T	24	50
BRCA	TCGA-E9-A245	GLB1	SNP	Missense_Mutation	3	33110406	T	C	58	88
BRCA	TCGA-E9-A245	SLBP	SNP	Nonsense_Mutation	4	1698071	G	A	37	65
BRCA	TCGA-E9-A245	PCDHA10	SNP	Missense_Mutation	5	140236550	C	T	28	45
BRCA	TCGA-E9-A245	PCDHB11	SNP	Missense_Mutation	5	140580941	G	A	43	40
BRCA	TCGA-E9-A245	CARTPT	DEL	In_Frame_Del	5	71015730	GAA	-	45	80
BRCA	TCGA-E9-A245	FAM135B	SNP	Missense_Mutation	8	139190894	T	C	63	64
BRCA	TCGA-E9-A245	PIP5K1B	SNP	Missense_Mutation	9	71509406	C	T	19	100
BRCA	TCGA-E9-A247	BCL9	SNP	Missense_Mutation	1	147091300	C	T	30	65
BRCA	TCGA-E9-A247	USH2A	SNP	Missense_Mutation	1	216591941	C	T	27	66
BRCA	TCGA-E9-A247	ZBTB48	SNP	Missense_Mutation	1	6640763	G	T	40	76
BRCA	TCGA-E9-A247	CUBN	SNP	Missense_Mutation	10	17024557	G	A	37	58
BRCA	TCGA-E9-A247	RAB18	SNP	Silent	10	27798830	C	G	19	88
BRCA	TCGA-E9-A247	SLC29A3	DEL	Frame_Shift_Del	10	73111493	CTAC	-	32	58
BRCA	TCGA-E9-A247	C11orf70	SNP	Missense_Mutation	11	101951992	G	A	48	52
BRCA	TCGA-E9-A247	OR5M8	SNP	Missense_Mutation	11	56258125	C	A	26	53
BRCA	TCGA-E9-A247	POLE	SNP	Missense_Mutation	12	133250274	A	G	13	92
BRCA	TCGA-E9-A247	ABCC9	SNP	Missense_Mutation	12	22086768	C	T	27	57
BRCA	TCGA-E9-A247	FREM2	SNP	Silent	13	39261493	C	G	23	49
BRCA	TCGA-E9-A247	ERI2	SNP	Missense_Mutation	16	20802184	T	G	55	55
BRCA	TCGA-E9-A247	ABCA3	SNP	Silent	16	2336775	G	A	38	30
BRCA	TCGA-E9-A247	KRTAP4-6	SNP	Missense_Mutation	17	39296499	G	A	39	52
BRCA	TCGA-E9-A247	ABCC3	SNP	Missense_Mutation	17	48755286	C	G	22	72
BRCA	TCGA-E9-A247	RTTN	SNP	Missense_Mutation	18	67684825	T	C	56	72
BRCA	TCGA-E9-A247	ZNF69	SNP	Missense_Mutation	19	12016108	C	T	19	55
BRCA	TCGA-E9-A247	CACTIN	SNP	Missense_Mutation	19	3619155	C	T	19	95
BRCA	TCGA-E9-A247	PPFIA3	SNP	Missense_Mutation	19	49632226	C	T	28	96
BRCA	TCGA-E9-A247	TBC1D8	SNP	Missense_Mutation	2	101656749	G	A	40	88
BRCA	TCGA-E9-A247	TTN	SNP	Missense_Mutation	2	179611371	C	G	20	51
BRCA	TCGA-E9-A247	FAM228A	INS	Frame_Shift_Ins	2	24402127	-	AA	19	62
BRCA	TCGA-E9-A247	KCNS1	SNP	Missense_Mutation	20	43723698	C	T	23	71
BRCA	TCGA-E9-A247	CT47B1	DEL	In_Frame_Del	23	120008797	TCCTCTGTGGCCTCCTCTGTGAGCTTC	-	62	51
BRCA	TCGA-E9-A247	POF1B	SNP	Silent	23	84634256	G	T	35	58
BRCA	TCGA-E9-A247	SYTL4	SNP	Silent	23	99942108	G	A	42	60
BRCA	TCGA-E9-A247	MUC4	SNP	Missense_Mutation	3	195505841	C	T	24	51
BRCA	TCGA-E9-A247	MUC4	SNP	Missense_Mutation	3	195507851	C	T	27	49
BRCA	TCGA-E9-A247	MUC4	SNP	Silent	3	195509655	G	T	47	59
BRCA	TCGA-E9-A247	MUC4	SNP	Silent	3	195511788	G	A	40	65
BRCA	TCGA-E9-A247	FAT4	SNP	Missense_Mutation	4	126372690	G	A	39	100
BRCA	TCGA-E9-A247	PPARGC1A	SNP	Nonsense_Mutation	4	23815386	G	A	37	85
BRCA	TCGA-E9-A247	PCDHGC4	SNP	Missense_Mutation	5	140866811	C	G	24	58
BRCA	TCGA-E9-A247	CMYA5	SNP	Missense_Mutation	5	79035212	A	G	16	72
BRCA	TCGA-E9-A247	HIST1H3F	SNP	Missense_Mutation	6	26250661	G	A	37	98
BRCA	TCGA-E9-A247	DEFB112	SNP	Missense_Mutation	6	50011380	C	T	19	21
BRCA	TCGA-E9-A247	ELN	SNP	Missense_Mutation	7	73474894	T	C	54	47
BRCA	TCGA-E9-A247	CSMD1	SNP	Missense_Mutation	8	3081256	G	T	45	76
BRCA	TCGA-E9-A247	WHSC1L1	SNP	Nonsense_Mutation	8	38173482	G	C	45	85
BRCA	TCGA-E9-A248	SPTA1	SNP	Silent	1	158651410	C	T	29	93
BRCA	TCGA-E9-A248	EPC1	SNP	Missense_Mutation	10	32558007	G	A	38	94
BRCA	TCGA-E9-A248	IDE	SNP	Nonsense_Mutation	10	94234712	G	A	38	69
BRCA	TCGA-E9-A248	MPEG1	SNP	Missense_Mutation	11	58979086	G	A	39	80
BRCA	TCGA-E9-A248	ATP11A	SNP	Missense_Mutation	13	113512220	C	T	27	84
BRCA	TCGA-E9-A248	NIN	SNP	Missense_Mutation	14	51243678	C	A	17	52
BRCA	TCGA-E9-A248	GOLGA8J	SNP	Missense_Mutation	15	32686365	A	G	7	60
BRCA	TCGA-E9-A248	B2M	SNP	Missense_Mutation	15	45007801	A	T	16	82
BRCA	TCGA-E9-A248	IFI35	SNP	Silent	17	41165618	C	T	27	25
BRCA	TCGA-E9-A248	C3	SNP	Missense_Mutation	19	6712375	G	C	43	62
BRCA	TCGA-E9-A248	CCL20	SNP	Missense_Mutation	2	228680193	C	T	32	74
BRCA	TCGA-E9-A248	PLCB4	SNP	Missense_Mutation	20	9417764	C	T	19	87
BRCA	TCGA-E9-A248	USP13	DEL	Splice_site	3	179371013	CATGCAGCG	-	21	53
BRCA	TCGA-E9-A248	LRBA	SNP	Silent	4	151935687	T	C	60	48
BRCA	TCGA-E9-A248	ZBTB9	SNP	Missense_Mutation	6	33423544	G	A	45	71
BRCA	TCGA-E9-A248	PLOD3	SNP	Missense_Mutation	7	100856163	C	G	26	70
BRCA	TCGA-E9-A248	CNTNAP2	SNP	Missense_Mutation	7	146825878	G	A	40	57
BRCA	TCGA-E9-A248	ODF2	SNP	Missense_Mutation	9	131221854	C	T	31	77
BRCA	TCGA-E9-A249	CD34	INS	Frame_Shift_Ins	1	208063100	-	A	33	45
BRCA	TCGA-E9-A249	EPHB2	SNP	Silent	1	23111511	C	T	31	49
BRCA	TCGA-E9-A249	CSMD2	SNP	Silent	1	34052731	G	T	41	49
BRCA	TCGA-E9-A249	USP54	SNP	Missense_Mutation	10	75279643	G	A	37	95
BRCA	TCGA-E9-A249	GATA3	DEL	Splice_Site	10	8111433	CA	-	29	87
BRCA	TCGA-E9-A249	HYOU1	SNP	Missense_Mutation	11	118919513	C	G	23	70
BRCA	TCGA-E9-A249	KCNJ11	SNP	Silent	11	17408781	G	T	41	56
BRCA	TCGA-E9-A249	TNKS1BP1	SNP	Missense_Mutation	11	57076056	C	T	23	54
BRCA	TCGA-E9-A249	OR2D3	SNP	Missense_Mutation	11	6942870	T	A	51	60
BRCA	TCGA-E9-A249	UBE3A	DEL	Frame_Shift_Del	15	25585293	GTGCTCTGTCT	-	44	100
BRCA	TCGA-E9-A249	IFT140	SNP	Silent	16	1575899	C	A	22	62
BRCA	TCGA-E9-A249	CBFB	SNP	Missense_Mutation	16	67063371	C	G	28	53
BRCA	TCGA-E9-A249	ELSPBP1	SNP	Splice_Site	19	48517566	G	T	44	68
BRCA	TCGA-E9-A249	NLRP2	SNP	Silent	19	55495082	C	T	19	43
BRCA	TCGA-E9-A249	LDOC1	SNP	Silent	23	140271018	C	A	26	55
BRCA	TCGA-E9-A249	MXRA5	SNP	Missense_Mutation	23	3229027	T	C	55	66
BRCA	TCGA-E9-A249	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-E9-A249	WDR19	SNP	Missense_Mutation	4	39236448	C	A	18	55
BRCA	TCGA-E9-A249	SLC26A1	SNP	Missense_Mutation	4	982720	G	C	48	54
BRCA	TCGA-E9-A249	CYP11B2	SNP	Missense_Mutation	8	143994109	C	T	27	85
BRCA	TCGA-E9-A249	MYOM2	SNP	Missense_Mutation	8	2020571	G	A	38	59
BRCA	TCGA-E9-A24A	C1orf65	SNP	Missense_Mutation	1	223567541	G	A	44	37
BRCA	TCGA-E9-A24A	MYO16	SNP	Missense_Mutation	13	109704802	G	T	33	70
BRCA	TCGA-E9-A24A	CCPG1	SNP	Missense_Mutation	15	55677882	T	A	58	56
BRCA	TCGA-E9-A24A	DNAH9	SNP	Missense_Mutation	17	11603195	G	A	39	100
BRCA	TCGA-E9-A24A	MUM1	SNP	Splice_site	19	1362249	A	G	11	49
BRCA	TCGA-E9-A24A	ELSPBP1	SNP	Missense_Mutation	19	48522988	A	T	4	57
BRCA	TCGA-E9-A24A	PLXNB3	SNP	Missense_Mutation	23	153043072	C	A	18	63
BRCA	TCGA-E9-A24A	CCDC50	SNP	Missense_Mutation	3	191047486	A	T	7	68
BRCA	TCGA-E9-A24A	KBTBD5	SNP	Missense_Mutation	3	42730193	G	A	39	96
BRCA	TCGA-E9-A24A	UBE2D3	SNP	Missense_Mutation	4	103730974	A	C	2	66
BRCA	TCGA-E9-A24A	SLIT2	SNP	Missense_Mutation	4	20541090	G	T	48	100
BRCA	TCGA-E9-A24A	DMP1	SNP	Missense_Mutation	4	88584083	G	A	37	56
BRCA	TCGA-E9-A24A	PCDHGA5	SNP	Missense_Mutation	5	140744030	G	A	40	86
BRCA	TCGA-E9-A24A	SLC2A12	INS	Frame_Shift_Ins	6	134323224	-	A	29	87
BRCA	TCGA-E9-A24A	OR5V1	SNP	Nonsense_Mutation	6	29323445	G	T	36	47
BRCA	TCGA-E9-A24A	LCA5	SNP	Missense_Mutation	6	80222980	C	A	32	72
BRCA	TCGA-E9-A24A	NDUFB9	SNP	Missense_Mutation	8	125555378	A	G	8	89
BRCA	TCGA-E9-A24A	CTNNAL1	SNP	Missense_Mutation	9	111734985	T	A	60	57
BRCA	TCGA-E9-A24A	TMEM8C	SNP	Silent	9	136384005	C	T	23	0
BRCA	TCGA-E9-A24A	MAMDC4	SNP	Missense_Mutation	9	139753216	G	A	39	48
BRCA	TCGA-E9-A295	PRAMEF12	SNP	Missense_Mutation	1	12837483	G	A	38	40
BRCA	TCGA-E9-A295	SEC16B	SNP	Missense_Mutation	1	177929522	G	T	41	55
BRCA	TCGA-E9-A295	KIF21B	SNP	Splice_site	1	200944041	G	T	46	98
BRCA	TCGA-E9-A295	CR1	SNP	Silent	1	207791576	G	A	47	49
BRCA	TCGA-E9-A295	OBSCN	SNP	Silent	1	228482539	G	A	39	29
BRCA	TCGA-E9-A295	OR2L13	SNP	Missense_Mutation	1	248262934	C	A	30	51
BRCA	TCGA-E9-A295	L1TD1	SNP	Missense_Mutation	1	62673207	G	T	46	50
BRCA	TCGA-E9-A295	RNF214	SNP	Missense_Mutation	11	117109661	A	C	9	62
BRCA	TCGA-E9-A295	EXT2	SNP	Missense_Mutation	11	44130752	G	A	37	75
BRCA	TCGA-E9-A295	PTPRJ	SNP	Missense_Mutation	11	48175418	G	A	38	97
BRCA	TCGA-E9-A295	OR4C46	SNP	Nonsense_Mutation	11	51515861	G	T	41	62
BRCA	TCGA-E9-A295	INTS4	SNP	Silent	11	77702202	C	T	23	48
BRCA	TCGA-E9-A295	DENND5A	SNP	Missense_Mutation	11	9202357	C	T	23	96
BRCA	TCGA-E9-A295	NUAK1	SNP	Missense_Mutation	12	106480580	G	T	40	58
BRCA	TCGA-E9-A295	FBXW8	SNP	Missense_Mutation	12	117426610	A	C	10	81
BRCA	TCGA-E9-A295	NOS1	SNP	Missense_Mutation	12	117662851	G	T	46	99
BRCA	TCGA-E9-A295	PDZRN4	SNP	Missense_Mutation	12	41966546	T	A	50	48
BRCA	TCGA-E9-A295	OR10AD1	SNP	Silent	12	48596743	G	A	39	40
BRCA	TCGA-E9-A295	DIP2B	SNP	Missense_Mutation	12	51108327	G	C	48	99
BRCA	TCGA-E9-A295	KRT83	SNP	Silent	12	52714811	G	A	40	51
BRCA	TCGA-E9-A295	MFAP5	SNP	Missense_Mutation	12	8814696	G	A	37	55
BRCA	TCGA-E9-A295	NBEA	SNP	Missense_Mutation	13	35716469	G	T	46	56
BRCA	TCGA-E9-A295	ATP10A	SNP	Missense_Mutation	15	25953412	T	C	54	59
BRCA	TCGA-E9-A295	C15orf55	SNP	Missense_Mutation	15	34646055	G	C	45	77
BRCA	TCGA-E9-A295	THAP10	SNP	Missense_Mutation	15	71175114	C	T	19	50
BRCA	TCGA-E9-A295	XYLT1	SNP	Missense_Mutation	16	17202698	C	T	23	52
BRCA	TCGA-E9-A295	ARL6IP1	SNP	Splice_site	16	18810156	C	G	26	97
BRCA	TCGA-E9-A295	ZNF267	SNP	Missense_Mutation	16	31926615	C	G	18	66
BRCA	TCGA-E9-A295	HELZ	SNP	Silent	17	65074605	G	A	42	63
BRCA	TCGA-E9-A295	GLP2R	SNP	Missense_Mutation	17	9774137	G	C	33	59
BRCA	TCGA-E9-A295	TMED1	SNP	Missense_Mutation	19	10943683	C	T	23	9
BRCA	TCGA-E9-A295	ZNF546	SNP	Nonsense_Mutation	19	40521668	G	T	41	67
BRCA	TCGA-E9-A295	ZNF528	SNP	Nonsense_Mutation	19	52919654	G	T	35	70
BRCA	TCGA-E9-A295	TBC1D8	SNP	Missense_Mutation	2	101650087	G	C	41	85
BRCA	TCGA-E9-A295	MGAT5	SNP	Missense_Mutation	2	135107444	C	T	31	85
BRCA	TCGA-E9-A295	SCN9A	SNP	Missense_Mutation	2	167163024	C	T	17	100
BRCA	TCGA-E9-A295	XIRP2	SNP	Nonsense_Mutation	2	168104572	G	T	33	54
BRCA	TCGA-E9-A295	TTN	SNP	Missense_Mutation	2	179604866	G	T	46	44
BRCA	TCGA-E9-A295	WDR35	SNP	Missense_Mutation	2	20145695	G	C	40	67
BRCA	TCGA-E9-A295	ELMOD3	SNP	Missense_Mutation	2	85617353	G	A	39	51
BRCA	TCGA-E9-A295	TGIF2-C20ORF24	SNP	Silent	20	35236207	C	T	32	60
BRCA	TCGA-E9-A295	KRTAP10-7	SNP	Missense_Mutation	21	46021138	T	C	50	44
BRCA	TCGA-E9-A295	XBP1	DEL	Frame_Shift_Del	22	29195125	CT	-	20	91
BRCA	TCGA-E9-A295	NXF5	SNP	Splice_Site	23	101096303	C	A	28	65
BRCA	TCGA-E9-A295	SAGE1	SNP	Missense_Mutation	23	134988302	G	T	34	40
BRCA	TCGA-E9-A295	ARHGEF6	SNP	Missense_Mutation	23	135750295	C	T	32	92
BRCA	TCGA-E9-A295	ABCD1	SNP	Missense_Mutation	23	152991469	G	A	40	93
BRCA	TCGA-E9-A295	MBTPS2	SNP	Missense_Mutation	23	21887782	G	A	36	81
BRCA	TCGA-E9-A295	DMD	SNP	Missense_Mutation	23	32716093	C	A	30	81
BRCA	TCGA-E9-A295	CXorf22	SNP	Splice_Site	23	35989890	G	C	42	76
BRCA	TCGA-E9-A295	NLGN4X	SNP	Missense_Mutation	23	5811039	G	T	39	89
BRCA	TCGA-E9-A295	PIK3CA	SNP	Missense_Mutation	3	178952085	A	T	8	91
BRCA	TCGA-E9-A295	MUC4	SNP	Splice_site	3	195486130	G	T	45	51
BRCA	TCGA-E9-A295	PAK2	SNP	Missense_Mutation	3	196547338	G	A	39	98
BRCA	TCGA-E9-A295	IL17RD	SNP	Missense_Mutation	3	57132299	C	T	19	97
BRCA	TCGA-E9-A295	FOXP1	DEL	Frame_Shift_Del	3	71027086	AG	-	7	94
BRCA	TCGA-E9-A295	FGG	SNP	Nonsense_Mutation	4	155533233	C	A	32	70
BRCA	TCGA-E9-A295	PCDHB12	SNP	Silent	5	140589271	C	T	32	51
BRCA	TCGA-E9-A295	AFAP1L1	SNP	Missense_Mutation	5	148702277	T	C	54	85
BRCA	TCGA-E9-A295	PHACTR2	SNP	Missense_Mutation	6	144033228	G	T	33	94
BRCA	TCGA-E9-A295	MAP3K4	SNP	Silent	6	161510422	G	A	36	68
BRCA	TCGA-E9-A295	AGPAT4	SNP	Missense_Mutation	6	161575278	A	G	9	88
BRCA	TCGA-E9-A295	RNF8	SNP	Silent	6	37349063	T	C	49	64
BRCA	TCGA-E9-A295	CUL7	SNP	Silent	6	43019030	C	G	29	56
BRCA	TCGA-E9-A295	AUTS2	SNP	Nonsense_Mutation	7	69364341	G	T	33	74
BRCA	TCGA-E9-A295	AUTS2	SNP	Silent	7	70252256	C	T	19	71
BRCA	TCGA-E9-A295	TRPS1	SNP	Silent	8	116426722	C	A	27	57
BRCA	TCGA-E9-A295	ADCY8	SNP	Missense_Mutation	8	132051949	G	T	34	53
BRCA	TCGA-E9-A295	ZNF251	SNP	Missense_Mutation	8	145948581	A	G	5	56
BRCA	TCGA-E9-A295	ANKRD20A4	SNP	Missense_Mutation	9	69423641	T	G	51	65
BRCA	TCGA-E9-A295	TRPM3	SNP	Missense_Mutation	9	73152199	G	A	40	83
BRCA	TCGA-EW-A1IW	SPAG17	SNP	Missense_Mutation	1	118598416	A	T	12	39
BRCA	TCGA-EW-A1IW	SMG5	SNP	Splice_site	1	156238081	C	T	23	83
BRCA	TCGA-EW-A1IW	ASAP3	SNP	Missense_Mutation	1	23765288	G	T	47	98
BRCA	TCGA-EW-A1IW	RYR2	SNP	Missense_Mutation	1	237802483	G	T	34	59
BRCA	TCGA-EW-A1IW	FMN2	SNP	Silent	1	240370290	C	G	29	50
BRCA	TCGA-EW-A1IW	KIF26B	SNP	Nonsense_Mutation	1	245704136	G	T	37	83
BRCA	TCGA-EW-A1IW	EPS15	SNP	Nonsense_Mutation	1	51910583	G	C	45	87
BRCA	TCGA-EW-A1IW	PTCHD3	SNP	Missense_Mutation	10	27702459	C	T	19	51
BRCA	TCGA-EW-A1IW	MARCH8	SNP	Silent	10	45956754	C	T	32	74
BRCA	TCGA-EW-A1IW	ZBED5	SNP	Nonsense_Mutation	11	10874686	G	A	45	71
BRCA	TCGA-EW-A1IW	MUC5B	SNP	Missense_Mutation	11	1272374	C	G	30	48
BRCA	TCGA-EW-A1IW	ZBTB44	SNP	Silent	11	130109788	G	A	45	92
BRCA	TCGA-EW-A1IW	LDLRAD3	SNP	Silent	11	36119974	A	G	3	39
BRCA	TCGA-EW-A1IW	UBQLN3	SNP	Silent	11	5529922	G	A	47	56
BRCA	TCGA-EW-A1IW	ST5	SNP	Silent	11	8737243	C	T	29	58
BRCA	TCGA-EW-A1IW	ESPL1	SNP	Missense_Mutation	12	53679978	G	A	34	56
BRCA	TCGA-EW-A1IW	FLT3	SNP	Silent	13	28644705	G	A	33	57
BRCA	TCGA-EW-A1IW	OR4N5	SNP	Missense_Mutation	14	20612762	C	T	31	57
BRCA	TCGA-EW-A1IW	FOXA1	SNP	Missense_Mutation	14	38061193	A	T	3	85
BRCA	TCGA-EW-A1IW	SIPA1L1	SNP	Silent	14	72139139	C	T	29	56
BRCA	TCGA-EW-A1IW	TTLL5	SNP	Nonsense_Mutation	14	76349121	C	T	21	84
BRCA	TCGA-EW-A1IW	FBN1	SNP	Missense_Mutation	15	48796053	C	T	29	70
BRCA	TCGA-EW-A1IW	NUBP1	SNP	Missense_Mutation	16	10837736	C	T	29	61
BRCA	TCGA-EW-A1IW	IL4R	SNP	Silent	16	27375082	G	A	33	53
BRCA	TCGA-EW-A1IW	CBFB	SNP	Missense_Mutation	16	67070624	G	T	37	93
BRCA	TCGA-EW-A1IW	CDH15	SNP	Silent	16	89254603	C	T	21	65
BRCA	TCGA-EW-A1IW	ABR	SNP	Silent	17	1028605	C	T	27	52
BRCA	TCGA-EW-A1IW	DNAH9	SNP	Silent	17	11726132	G	A	36	62
BRCA	TCGA-EW-A1IW	KRT24	SNP	Missense_Mutation	17	38855709	C	G	31	72
BRCA	TCGA-EW-A1IW	ATP6V0A1	SNP	Silent	17	40653307	G	A	45	67
BRCA	TCGA-EW-A1IW	ST6GALNAC1	SNP	Silent	17	74623304	C	T	29	54
BRCA	TCGA-EW-A1IW	EPOR	SNP	Missense_Mutation	19	11488689	G	T	33	51
BRCA	TCGA-EW-A1IW	OR7C1	SNP	Silent	19	14910316	G	A	45	45
BRCA	TCGA-EW-A1IW	MAST3	SNP	Missense_Mutation	19	18234421	G	A	45	96
BRCA	TCGA-EW-A1IW	EEF2	SNP	Missense_Mutation	19	3978146	G	A	39	64
BRCA	TCGA-EW-A1IW	MUC16	SNP	Missense_Mutation	19	8977652	C	G	32	68
BRCA	TCGA-EW-A1IW	IL1RL2	SNP	Missense_Mutation	2	102835485	A	G	4	55
BRCA	TCGA-EW-A1IW	RGPD3	SNP	Missense_Mutation	2	107050797	C	T	29	76
BRCA	TCGA-EW-A1IW	GREB1	SNP	Missense_Mutation	2	11727547	C	T	23	62
BRCA	TCGA-EW-A1IW	ARHGAP15	SNP	Missense_Mutation	2	143973974	C	G	32	78
BRCA	TCGA-EW-A1IW	TTN	SNP	Missense_Mutation	2	179425385	C	T	29	100
BRCA	TCGA-EW-A1IW	MDH1B	SNP	Missense_Mutation	2	207610374	G	T	48	46
BRCA	TCGA-EW-A1IW	CPS1	SNP	Missense_Mutation	2	211465381	C	T	29	96
BRCA	TCGA-EW-A1IW	IQCA1	SNP	Nonsense_Mutation	2	237405937	G	A	40	82
BRCA	TCGA-EW-A1IW	RPRD1B	SNP	Missense_Mutation	20	36668886	C	G	30	54
BRCA	TCGA-EW-A1IW	ADNP	SNP	Missense_Mutation	20	49508731	A	T	5	56
BRCA	TCGA-EW-A1IW	COL9A3	SNP	Nonsense_Mutation	20	61458599	C	T	23	49
BRCA	TCGA-EW-A1IW	SIK1	SNP	Silent	21	44838354	G	A	35	56
BRCA	TCGA-EW-A1IW	MYH9	SNP	Silent	22	36737526	G	A	35	71
BRCA	TCGA-EW-A1IW	WWC3	SNP	Silent	23	10058871	C	T	29	53
BRCA	TCGA-EW-A1IW	RBMXL3	SNP	Missense_Mutation	23	114425884	G	A	41	56
BRCA	TCGA-EW-A1IW	GNL3L	SNP	Missense_Mutation	23	54577449	G	T	38	81
BRCA	TCGA-EW-A1IW	TAF1	SNP	Silent	23	70617194	C	T	29	52
BRCA	TCGA-EW-A1IW	IRAK2	SNP	Missense_Mutation	3	10254979	C	T	25	77
BRCA	TCGA-EW-A1IW	KIAA2018	SNP	Missense_Mutation	3	113374108	C	T	32	97
BRCA	TCGA-EW-A1IW	CASR	SNP	Missense_Mutation	3	122003458	G	A	39	80
BRCA	TCGA-EW-A1IW	GYG1	SNP	Splice_Site	3	148714088	G	C	33	97
BRCA	TCGA-EW-A1IW	PIK3CA	SNP	Missense_Mutation	3	178936095	A	G	7	90
BRCA	TCGA-EW-A1IW	FXR1	SNP	Silent	3	180685879	T	G	55	47
BRCA	TCGA-EW-A1IW	C3orf26	SNP	Splice_Site	3	99886581	G	A	36	88
BRCA	TCGA-EW-A1IW	TBCK	SNP	Missense_Mutation	4	107170104	C	G	32	97
BRCA	TCGA-EW-A1IW	PCDHB4	SNP	Missense_Mutation	5	140502124	C	G	31	49
BRCA	TCGA-EW-A1IW	ADAMTS2	SNP	Missense_Mutation	5	178541264	G	C	34	70
BRCA	TCGA-EW-A1IW	NLN	SNP	Missense_Mutation	5	65084087	G	C	33	55
BRCA	TCGA-EW-A1IW	FAM169A	SNP	Silent	5	74096761	A	G	2	64
BRCA	TCGA-EW-A1IW	SYNE1	SNP	Splice_Site	6	152570399	T	C	53	87
BRCA	TCGA-EW-A1IW	PRPF4B	SNP	Missense_Mutation	6	4031906	G	A	36	69
BRCA	TCGA-EW-A1IW	DST	SNP	Missense_Mutation	6	56358848	T	A	62	90
BRCA	TCGA-EW-A1IW	SNAP91	SNP	Splice_Site	6	84372142	C	G	32	98
BRCA	TCGA-EW-A1IW	TRA2A	SNP	Missense_Mutation	7	23545770	C	T	29	95
BRCA	TCGA-EW-A1IW	NAPRT1	SNP	Missense_Mutation	8	144657482	T	C	62	60
BRCA	TCGA-EW-A1IW	XPO7	SNP	Silent	8	21842187	G	A	39	45
BRCA	TCGA-EW-A1IW	PPP1R3B	SNP	Nonsense_Mutation	8	8998783	G	A	37	84
BRCA	TCGA-EW-A1IW	DOLK	INS	Splice_site	9	131709581	-	T	8	60
BRCA	TCGA-EW-A1IW	ALDH1A1	SNP	Silent	9	75533709	C	T	30	55
BRCA	TCGA-EW-A1IW	HABP4	SNP	Silent	9	99252296	G	A	39	48
BRCA	TCGA-EW-A1IX	GPR158	SNP	Missense_Mutation	10	25885597	G	A	37	100
BRCA	TCGA-EW-A1IX	GNPTAB	SNP	Missense_Mutation	12	102151069	C	T	32	100
BRCA	TCGA-EW-A1IX	FAM186A	DNP	Missense_Mutation	12	50747334	GC	TT	34	46
BRCA	TCGA-EW-A1IX	KPNA3	SNP	Nonsense_Mutation	13	50296658	G	A	45	100
BRCA	TCGA-EW-A1IX	RAD51B	SNP	Missense_Mutation	14	68292285	G	T	33	57
BRCA	TCGA-EW-A1IX	B3GNT9	SNP	Silent	16	67184131	G	C	34	53
BRCA	TCGA-EW-A1IX	ZZEF1	SNP	Missense_Mutation	17	3975955	C	G	32	66
BRCA	TCGA-EW-A1IX	TOB1	SNP	Missense_Mutation	17	48940939	G	A	45	98
BRCA	TCGA-EW-A1IX	ZNF701	SNP	Splice_site	19	53079273	G	A	47	59
BRCA	TCGA-EW-A1IX	MYO7B	SNP	Missense_Mutation	2	128394164	C	G	29	83
BRCA	TCGA-EW-A1IX	MPP4	DEL	Frame_Shift_Del	2	202529007	AC	-	2	53
BRCA	TCGA-EW-A1IX	TTI1	SNP	Silent	20	36641777	G	A	33	81
BRCA	TCGA-EW-A1IX	DLG3	SNP	Nonsense_Mutation	23	69722031	C	G	29	93
BRCA	TCGA-EW-A1IX	SERPINI2	SNP	Silent	3	167183403	C	G	21	66
BRCA	TCGA-EW-A1IX	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-EW-A1IX	SLIT2	SNP	Missense_Mutation	4	20555534	G	C	47	100
BRCA	TCGA-EW-A1IX	TBX20	SNP	Missense_Mutation	7	35244129	C	T	30	79
BRCA	TCGA-EW-A1IX	PGAM2	SNP	Missense_Mutation	7	44104972	C	G	29	98
BRCA	TCGA-EW-A1IX	ZC3H3	SNP	Silent	8	144621351	G	A	36	54
BRCA	TCGA-EW-A1IX	PAPPA	SNP	Missense_Mutation	9	118997720	G	A	40	62
BRCA	TCGA-EW-A1IX	FAM22G	SNP	Missense_Mutation	9	99699543	C	T	29	44
BRCA	TCGA-EW-A1IY	RGSL1	SNP	Missense_Mutation	1	182517845	C	A	24	64
BRCA	TCGA-EW-A1IY	KIF21B	SNP	Missense_Mutation	1	200969064	C	T	26	58
BRCA	TCGA-EW-A1IY	TARBP1	SNP	Missense_Mutation	1	234566023	G	C	45	71
BRCA	TCGA-EW-A1IY	RPS6KA1	SNP	Missense_Mutation	1	26882081	G	A	39	89
BRCA	TCGA-EW-A1IY	TACC2	SNP	Silent	10	123845984	G	A	47	54
BRCA	TCGA-EW-A1IY	HTRA1	SNP	Missense_Mutation	10	124269648	G	A	37	94
BRCA	TCGA-EW-A1IY	CDH23	SNP	Missense_Mutation	10	73501658	G	A	37	99
BRCA	TCGA-EW-A1IY	CRTAC1	SNP	Silent	10	99655057	G	T	37	48
BRCA	TCGA-EW-A1IY	PRR5L	SNP	Silent	11	36453429	C	T	32	55
BRCA	TCGA-EW-A1IY	ZMYM2	DEL	Frame_Shift_Del	13	20625607	CT	-	20	72
BRCA	TCGA-EW-A1IY	AKT1	SNP	Missense_Mutation	14	105246551	C	T	30	95
BRCA	TCGA-EW-A1IY	TRIP11	SNP	Silent	14	92470730	C	T	30	100
BRCA	TCGA-EW-A1IY	MAGEL2	SNP	Missense_Mutation	15	23889494	G	C	33	56
BRCA	TCGA-EW-A1IY	SCAMP5	SNP	Silent	15	75305052	C	T	29	85
BRCA	TCGA-EW-A1IY	IFT140	SNP	Silent	16	1570681	C	T	32	60
BRCA	TCGA-EW-A1IY	SETD1A	DEL	In_Frame_Del	16	30982802	CTCCTCATCCTCCTC	-	28	61
BRCA	TCGA-EW-A1IY	CTCF	SNP	Missense_Mutation	16	67645412	A	G	14	92
BRCA	TCGA-EW-A1IY	ZNF358	SNP	Missense_Mutation	19	7584348	G	A	37	55
BRCA	TCGA-EW-A1IY	ABCA12	SNP	Silent	2	215818580	G	A	45	84
BRCA	TCGA-EW-A1IY	PEX13	SNP	Missense_Mutation	2	61258802	C	G	21	85
BRCA	TCGA-EW-A1IY	WDR44	SNP	Missense_Mutation	23	117578415	G	A	37	49
BRCA	TCGA-EW-A1IY	FLNB	SNP	Missense_Mutation	3	58154202	G	T	34	95
BRCA	TCGA-EW-A1IY	LTV1	SNP	Silent	6	144184640	G	A	33	51
BRCA	TCGA-EW-A1IY	ULBP2	SNP	Nonsense_Mutation	6	150267715	C	G	29	52
BRCA	TCGA-EW-A1IY	HIST1H1T	SNP	Missense_Mutation	6	26108248	C	T	31	53
BRCA	TCGA-EW-A1IY	ALAD	SNP	Silent	9	116155798	T	C	59	26
BRCA	TCGA-EW-A1IY	PAPPA	SNP	Missense_Mutation	9	119106938	G	A	39	50
BRCA	TCGA-EW-A1IZ	AMY2B	SNP	Silent	1	104117917	A	G	2	71
BRCA	TCGA-EW-A1IZ	APITD1	SNP	Missense_Mutation	1	10502382	C	A	17	58
BRCA	TCGA-EW-A1IZ	PLOD1	SNP	Missense_Mutation	1	12030842	C	T	19	100
BRCA	TCGA-EW-A1IZ	SSR2	SNP	Missense_Mutation	1	155984778	G	T	35	73
BRCA	TCGA-EW-A1IZ	MEF2D	SNP	Missense_Mutation	1	156446980	T	C	55	87
BRCA	TCGA-EW-A1IZ	CDK11B	SNP	Missense_Mutation	1	1573880	C	T	28	89
BRCA	TCGA-EW-A1IZ	AGMAT	SNP	Missense_Mutation	1	15906613	G	A	43	96
BRCA	TCGA-EW-A1IZ	DUSP27	SNP	Missense_Mutation	1	167086745	C	T	27	82
BRCA	TCGA-EW-A1IZ	TIPRL	SNP	Silent	1	168168159	T	C	55	45
BRCA	TCGA-EW-A1IZ	CEP350	SNP	Silent	1	179959671	A	G	15	61
BRCA	TCGA-EW-A1IZ	CACNA1E	SNP	Missense_Mutation	1	181690990	G	A	48	98
BRCA	TCGA-EW-A1IZ	ZBTB41	DEL	Frame_Shift_Del	1	197169434	GAGG	-	33	87
BRCA	TCGA-EW-A1IZ	EIF4G3	SNP	Missense_Mutation	1	21180137	C	T	32	91
BRCA	TCGA-EW-A1IZ	CENPF	SNP	Missense_Mutation	1	214814654	G	A	45	50
BRCA	TCGA-EW-A1IZ	KCNK2	SNP	Missense_Mutation	1	215342695	C	T	19	80
BRCA	TCGA-EW-A1IZ	BROX	SNP	Missense_Mutation	1	222906001	C	A	24	97
BRCA	TCGA-EW-A1IZ	CELA3B	SNP	Silent	1	22310304	C	T	23	45
BRCA	TCGA-EW-A1IZ	CNIH3	SNP	Missense_Mutation	1	224872505	G	A	39	79
BRCA	TCGA-EW-A1IZ	OBSCN	SNP	Missense_Mutation	1	228481236	C	T	23	53
BRCA	TCGA-EW-A1IZ	HIST3H3	SNP	Missense_Mutation	1	228612752	G	A	38	92
BRCA	TCGA-EW-A1IZ	OR2T11	SNP	Missense_Mutation	1	248790131	A	G	11	61
BRCA	TCGA-EW-A1IZ	DHDDS	SNP	Silent	1	26764736	G	A	42	46
BRCA	TCGA-EW-A1IZ	SFN	SNP	Silent	1	27189737	C	T	28	50
BRCA	TCGA-EW-A1IZ	DNALI1	SNP	Missense_Mutation	1	38023344	C	T	22	49
BRCA	TCGA-EW-A1IZ	MANEAL	SNP	Silent	1	38265584	C	T	28	57
BRCA	TCGA-EW-A1IZ	LEPRE1	SNP	Missense_Mutation	1	43215952	G	A	40	79
BRCA	TCGA-EW-A1IZ	CCDC24	SNP	Missense_Mutation	1	44461500	G	A	43	46
BRCA	TCGA-EW-A1IZ	PDZK1IP1	SNP	Missense_Mutation	1	47650716	A	G	6	44
BRCA	TCGA-EW-A1IZ	ECHDC2	SNP	Missense_Mutation	1	53362256	C	T	23	49
BRCA	TCGA-EW-A1IZ	C1orf123	DEL	In_Frame_Del	1	53681666	CTC	-	32	49
BRCA	TCGA-EW-A1IZ	NPHP4	SNP	Missense_Mutation	1	5925191	C	T	28	74
BRCA	TCGA-EW-A1IZ	RBMXL1	SNP	Nonsense_Mutation	1	89448795	G	A	40	51
BRCA	TCGA-EW-A1IZ	DNTTIP2	SNP	Silent	1	94342201	C	T	27	47
BRCA	TCGA-EW-A1IZ	ALG14	SNP	Missense_Mutation	1	95492695	T	G	56	64
BRCA	TCGA-EW-A1IZ	SNX7	SNP	Missense_Mutation	1	99157130	C	T	19	77
BRCA	TCGA-EW-A1IZ	CWF19L1	SNP	Missense_Mutation	10	102006652	T	C	50	57
BRCA	TCGA-EW-A1IZ	SFXN3	SNP	Missense_Mutation	10	102795363	C	T	23	76
BRCA	TCGA-EW-A1IZ	WDR37	SNP	Missense_Mutation	10	1151084	C	T	19	87
BRCA	TCGA-EW-A1IZ	HSPA12A	SNP	Silent	10	118458152	C	T	27	37
BRCA	TCGA-EW-A1IZ	WDR11	SNP	Missense_Mutation	10	122643389	A	G	4	54
BRCA	TCGA-EW-A1IZ	TACC2	SNP	Missense_Mutation	10	123848088	G	A	44	50
BRCA	TCGA-EW-A1IZ	CLRN3	SNP	Silent	10	129676623	G	A	39	0
BRCA	TCGA-EW-A1IZ	JAKMIP3	SNP	Silent	10	133946851	C	T	31	65
BRCA	TCGA-EW-A1IZ	ADAM8	SNP	Missense_Mutation	10	135084508	C	T	23	96
BRCA	TCGA-EW-A1IZ	CACNB2	SNP	Silent	10	18827198	C	A	22	46
BRCA	TCGA-EW-A1IZ	NEBL	SNP	Silent	10	21097452	C	T	19	41
BRCA	TCGA-EW-A1IZ	SPAG6	SNP	Silent	10	22680768	G	T	43	49
BRCA	TCGA-EW-A1IZ	MASTL	SNP	Missense_Mutation	10	27447506	A	G	1	89
BRCA	TCGA-EW-A1IZ	LYZL1	SNP	Silent	10	29580826	T	C	63	47
BRCA	TCGA-EW-A1IZ	FAM170B	SNP	Missense_Mutation	10	50340002	T	C	63	51
BRCA	TCGA-EW-A1IZ	SEC24C	SNP	Missense_Mutation	10	75510956	A	G	5	80
BRCA	TCGA-EW-A1IZ	NRG3	SNP	Missense_Mutation	10	83637750	G	A	40	50
BRCA	TCGA-EW-A1IZ	LGI1	SNP	Missense_Mutation	10	95557468	G	A	48	84
BRCA	TCGA-EW-A1IZ	SIK3	SNP	Missense_Mutation	11	116734457	G	A	34	94
BRCA	TCGA-EW-A1IZ	OR6X1	SNP	Missense_Mutation	11	123624868	C	T	27	71
BRCA	TCGA-EW-A1IZ	NFRKB	SNP	Missense_Mutation	11	129739508	C	T	17	75
BRCA	TCGA-EW-A1IZ	SIRT3	SNP	Missense_Mutation	11	233199	G	T	35	70
BRCA	TCGA-EW-A1IZ	EXT2	SNP	Missense_Mutation	11	44228469	T	A	50	93
BRCA	TCGA-EW-A1IZ	OR4X1	SNP	Missense_Mutation	11	48285598	C	A	28	63
BRCA	TCGA-EW-A1IZ	RNH1	SNP	Silent	11	502136	G	A	48	52
BRCA	TCGA-EW-A1IZ	OR10AG1	SNP	Missense_Mutation	11	55735641	C	T	26	51
BRCA	TCGA-EW-A1IZ	PRKCDBP	SNP	Silent	11	6340459	G	A	39	46
BRCA	TCGA-EW-A1IZ	DCHS1	SNP	Missense_Mutation	11	6653279	C	T	27	62
BRCA	TCGA-EW-A1IZ	SSH3	SNP	Silent	11	67079319	G	A	35	79
BRCA	TCGA-EW-A1IZ	TYR	SNP	Missense_Mutation	11	88911273	G	A	42	79
BRCA	TCGA-EW-A1IZ	STAB2	SNP	Splice_Site	12	104129268	G	T	35	78
BRCA	TCGA-EW-A1IZ	CHST11	SNP	Missense_Mutation	12	105151273	C	T	27	63
BRCA	TCGA-EW-A1IZ	PWP1	SNP	Missense_Mutation	12	108090359	C	T	20	71
BRCA	TCGA-EW-A1IZ	PLBD2	SNP	Silent	12	113826338	G	A	40	38
BRCA	TCGA-EW-A1IZ	NOS1	SNP	Splice_Site	12	117680511	C	T	24	95
BRCA	TCGA-EW-A1IZ	RNF34	SNP	Silent	12	121853973	G	A	40	27
BRCA	TCGA-EW-A1IZ	PITPNM2	SNP	Missense_Mutation	12	123519107	G	A	42	82
BRCA	TCGA-EW-A1IZ	WBP11	SNP	Missense_Mutation	12	14948019	A	G	6	88
BRCA	TCGA-EW-A1IZ	STK38L	SNP	Missense_Mutation	12	27475300	G	T	47	99
BRCA	TCGA-EW-A1IZ	CAPRIN2	SNP	Splice_Site	12	30904069	T	C	53	79
BRCA	TCGA-EW-A1IZ	YARS2	SNP	Missense_Mutation	12	32903765	G	A	45	77
BRCA	TCGA-EW-A1IZ	ALG10	SNP	Silent	12	34179103	A	G	10	53
BRCA	TCGA-EW-A1IZ	SCAF11	INS	Frame_Shift_Ins	12	46320516	-	T	32	73
BRCA	TCGA-EW-A1IZ	GALNT8	SNP	Missense_Mutation	12	4870281	T	C	58	80
BRCA	TCGA-EW-A1IZ	GALNT6	SNP	Silent	12	51754571	C	T	28	49
BRCA	TCGA-EW-A1IZ	SP1	SNP	Missense_Mutation	12	53775933	T	C	63	86
BRCA	TCGA-EW-A1IZ	GPR84	SNP	Nonsense_Mutation	12	54757017	G	A	40	53
BRCA	TCGA-EW-A1IZ	SMARCC2	SNP	Missense_Mutation	12	56572801	C	T	26	93
BRCA	TCGA-EW-A1IZ	TIMELESS	SNP	Missense_Mutation	12	56814908	G	A	38	55
BRCA	TCGA-EW-A1IZ	USP15	DEL	Frame_Shift_Del	12	62786055	TT	-	56	92
BRCA	TCGA-EW-A1IZ	DYRK2	SNP	Missense_Mutation	12	68050943	G	A	39	67
BRCA	TCGA-EW-A1IZ	SPSB2	INS	Frame_Shift_Ins	12	6981614	-	G	55	49
BRCA	TCGA-EW-A1IZ	MYF6	SNP	Missense_Mutation	12	81102372	C	T	28	83
BRCA	TCGA-EW-A1IZ	CCDC168	SNP	Silent	13	103382857	T	C	60	47
BRCA	TCGA-EW-A1IZ	SPACA7	SNP	Missense_Mutation	13	113088826	G	T	35	49
BRCA	TCGA-EW-A1IZ	ATP4B	SNP	Missense_Mutation	13	114303781	C	T	19	66
BRCA	TCGA-EW-A1IZ	XPO4	INS	Frame_Shift_Ins	13	21362688	-	T	16	91
BRCA	TCGA-EW-A1IZ	MIPEP	SNP	Silent	13	24460601	A	G	16	42
BRCA	TCGA-EW-A1IZ	MTUS2	SNP	Silent	13	29600608	C	T	17	52
BRCA	TCGA-EW-A1IZ	DCLK1	SNP	Missense_Mutation	13	36445388	T	C	53	79
BRCA	TCGA-EW-A1IZ	PROSER1	SNP	Missense_Mutation	13	39603474	T	C	57	53
BRCA	TCGA-EW-A1IZ	SUCLA2	SNP	Silent	13	48563103	G	A	37	60
BRCA	TCGA-EW-A1IZ	SETDB2	SNP	Missense_Mutation	13	50050946	A	G	14	70
BRCA	TCGA-EW-A1IZ	MYCBP2	SNP	Missense_Mutation	13	77669522	C	T	25	99
BRCA	TCGA-EW-A1IZ	AP5M1	SNP	Nonsense_Mutation	14	57749707	C	T	31	64
BRCA	TCGA-EW-A1IZ	NEK9	SNP	Nonsense_Mutation	14	75572697	G	A	40	67
BRCA	TCGA-EW-A1IZ	FAM181A	INS	Frame_Shift_Ins	14	94391640	-	T	32	49
BRCA	TCGA-EW-A1IZ	APBA2	SNP	Missense_Mutation	15	29367161	G	A	38	83
BRCA	TCGA-EW-A1IZ	RYR3	SNP	Silent	15	34049768	C	A	24	54
BRCA	TCGA-EW-A1IZ	RYR3	SNP	Silent	15	34156378	G	A	34	48
BRCA	TCGA-EW-A1IZ	RFX7	SNP	Silent	15	56388765	G	A	40	43
BRCA	TCGA-EW-A1IZ	MNS1	SNP	Missense_Mutation	15	56723678	A	G	6	53
BRCA	TCGA-EW-A1IZ	SMAD3	SNP	Missense_Mutation	15	67358560	A	G	7	66
BRCA	TCGA-EW-A1IZ	MYO9A	SNP	Missense_Mutation	15	72119094	T	C	60	88
BRCA	TCGA-EW-A1IZ	CPEB1	SNP	Nonsense_Mutation	15	83240148	G	A	39	60
BRCA	TCGA-EW-A1IZ	ANPEP	SNP	Missense_Mutation	15	90348325	G	A	46	57
BRCA	TCGA-EW-A1IZ	MAN2A2	SNP	Missense_Mutation	15	91456857	G	A	39	70
BRCA	TCGA-EW-A1IZ	CACNA1H	SNP	Missense_Mutation	16	1248638	C	G	28	75
BRCA	TCGA-EW-A1IZ	ACSM5	SNP	Nonsense_Mutation	16	20448431	C	T	23	47
BRCA	TCGA-EW-A1IZ	SH2B1	SNP	Missense_Mutation	16	28884971	G	A	40	55
BRCA	TCGA-EW-A1IZ	ZNF213	SNP	Missense_Mutation	16	3188811	G	T	47	56
BRCA	TCGA-EW-A1IZ	SEC14L5	SNP	Missense_Mutation	16	5046950	G	A	38	98
BRCA	TCGA-EW-A1IZ	RPGRIP1L	DEL	In_Frame_Del	16	53706790	TTC	-	52	61
BRCA	TCGA-EW-A1IZ	WWP2	SNP	Missense_Mutation	16	69965781	G	T	43	100
BRCA	TCGA-EW-A1IZ	MBTPS1	SNP	Missense_Mutation	16	84088175	A	G	10	80
BRCA	TCGA-EW-A1IZ	MYH3	SNP	Silent	17	10549037	C	T	23	4
BRCA	TCGA-EW-A1IZ	NCOR1	SNP	Splice_Site	17	15995175	A	G	14	84
BRCA	TCGA-EW-A1IZ	KIAA0664	SNP	Missense_Mutation	17	2597292	T	C	62	91
BRCA	TCGA-EW-A1IZ	PIGS	SNP	Missense_Mutation	17	26881988	G	A	39	64
BRCA	TCGA-EW-A1IZ	PHF12	SNP	Missense_Mutation	17	27239621	A	T	4	48
BRCA	TCGA-EW-A1IZ	AP2B1	SNP	Splice_site	17	33953640	C	T	25	55
BRCA	TCGA-EW-A1IZ	CDC6	DEL	Frame_Shift_Del	17	38449856	AT	-	8	54
BRCA	TCGA-EW-A1IZ	KRT40	SNP	Silent	17	39137136	C	T	17	51
BRCA	TCGA-EW-A1IZ	ZZEF1	SNP	Silent	17	3919737	G	A	34	76
BRCA	TCGA-EW-A1IZ	KRT33B	SNP	Silent	17	39525757	C	T	23	44
BRCA	TCGA-EW-A1IZ	DNAJC7	SNP	Missense_Mutation	17	40141457	C	T	26	98
BRCA	TCGA-EW-A1IZ	BCAS3	SNP	Silent	17	58988000	G	A	42	44
BRCA	TCGA-EW-A1IZ	TANC2	SNP	Silent	17	61176555	C	T	27	53
BRCA	TCGA-EW-A1IZ	TANC2	SNP	Silent	17	61498332	A	G	5	50
BRCA	TCGA-EW-A1IZ	SCN4A	SNP	Missense_Mutation	17	62019291	G	A	39	63
BRCA	TCGA-EW-A1IZ	EIF4A3	SNP	Missense_Mutation	17	78109862	C	T	27	87
BRCA	TCGA-EW-A1IZ	ROCK1	SNP	Missense_Mutation	18	18539823	G	A	41	100
BRCA	TCGA-EW-A1IZ	CABYR	SNP	Missense_Mutation	18	21735866	C	T	19	48
BRCA	TCGA-EW-A1IZ	LPIN2	SNP	Missense_Mutation	18	2929124	C	T	31	84
BRCA	TCGA-EW-A1IZ	KLHL14	SNP	Splice_site	18	30267118	C	A	24	97
BRCA	TCGA-EW-A1IZ	SETBP1	SNP	Missense_Mutation	18	42532994	C	T	18	72
BRCA	TCGA-EW-A1IZ	ZCCHC2	SNP	Nonsense_Mutation	18	60207019	C	T	27	82
BRCA	TCGA-EW-A1IZ	ZNF516	SNP	Missense_Mutation	18	74092170	C	T	27	38
BRCA	TCGA-EW-A1IZ	DOT1L	SNP	Missense_Mutation	19	2185914	C	A	20	71
BRCA	TCGA-EW-A1IZ	WTIP	SNP	Missense_Mutation	19	34991089	G	A	42	81
BRCA	TCGA-EW-A1IZ	C19orf71	SNP	Nonsense_Mutation	19	3543380	C	G	17	80
BRCA	TCGA-EW-A1IZ	DMKN	SNP	Splice_site	19	35994348	T	C	58	56
BRCA	TCGA-EW-A1IZ	ARHGAP33	SNP	Missense_Mutation	19	36278850	T	C	54	59
BRCA	TCGA-EW-A1IZ	RYR1	SNP	Missense_Mutation	19	38987176	G	A	42	98
BRCA	TCGA-EW-A1IZ	ZNF780B	SNP	Silent	19	40542427	G	A	37	49
BRCA	TCGA-EW-A1IZ	MEGF8	SNP	Missense_Mutation	19	42853706	G	A	38	86
BRCA	TCGA-EW-A1IZ	SAE1	SNP	Nonsense_Mutation	19	47653513	C	T	23	67
BRCA	TCGA-EW-A1IZ	DHX34	SNP	Nonsense_Mutation	19	47884112	C	T	21	78
BRCA	TCGA-EW-A1IZ	PPFIA3	SNP	Missense_Mutation	19	49651945	A	G	16	88
BRCA	TCGA-EW-A1IZ	ZNF415	SNP	Missense_Mutation	19	53612925	G	A	40	54
BRCA	TCGA-EW-A1IZ	FUT5	SNP	Missense_Mutation	19	5867314	C	A	24	29
BRCA	TCGA-EW-A1IZ	ZNF132	SNP	Missense_Mutation	19	58946279	C	T	27	47
BRCA	TCGA-EW-A1IZ	KLF11	SNP	Missense_Mutation	2	10188309	C	T	28	58
BRCA	TCGA-EW-A1IZ	SLC9A2	SNP	Missense_Mutation	2	103321037	A	G	10	79
BRCA	TCGA-EW-A1IZ	CCDC138	SNP	Silent	2	109432417	T	C	64	51
BRCA	TCGA-EW-A1IZ	C2orf76	SNP	Missense_Mutation	2	120060116	T	C	60	77
BRCA	TCGA-EW-A1IZ	SNTG2	SNP	Silent	2	1312322	C	T	31	50
BRCA	TCGA-EW-A1IZ	LRP1B	SNP	Silent	2	141607771	G	A	37	44
BRCA	TCGA-EW-A1IZ	TPO	SNP	Missense_Mutation	2	1520723	G	A	38	59
BRCA	TCGA-EW-A1IZ	IFIH1	SNP	Missense_Mutation	2	163130328	T	C	59	79
BRCA	TCGA-EW-A1IZ	METAP1D	SNP	Missense_Mutation	2	172930997	C	A	24	86
BRCA	TCGA-EW-A1IZ	HOXD8	SNP	Silent	2	176996277	C	T	19	49
BRCA	TCGA-EW-A1IZ	CWC22	SNP	Missense_Mutation	2	180809917	G	A	41	66
BRCA	TCGA-EW-A1IZ	FRZB	SNP	Missense_Mutation	2	183703303	G	A	47	84
BRCA	TCGA-EW-A1IZ	ORMDL1	SNP	Missense_Mutation	2	190647159	T	C	49	76
BRCA	TCGA-EW-A1IZ	APOB	SNP	Missense_Mutation	2	21233643	G	A	42	53
BRCA	TCGA-EW-A1IZ	ASPRV1	SNP	Missense_Mutation	2	70188297	G	A	35	64
BRCA	TCGA-EW-A1IZ	ADD2	SNP	Missense_Mutation	2	70905920	C	A	26	95
BRCA	TCGA-EW-A1IZ	ADD2	SNP	Missense_Mutation	2	70906014	G	A	42	95
BRCA	TCGA-EW-A1IZ	GNLY	SNP	Missense_Mutation	2	85922455	C	T	32	52
BRCA	TCGA-EW-A1IZ	KIAA1211L	SNP	Splice_site	2	99449325	C	A	24	82
BRCA	TCGA-EW-A1IZ	VPS16	SNP	Silent	20	2840965	G	T	47	50
BRCA	TCGA-EW-A1IZ	REM1	SNP	Missense_Mutation	20	30064292	G	A	39	88
BRCA	TCGA-EW-A1IZ	BPIFB4	SNP	Missense_Mutation	20	31671634	G	A	40	57
BRCA	TCGA-EW-A1IZ	ZMYND8	SNP	Missense_Mutation	20	45855964	C	T	31	88
BRCA	TCGA-EW-A1IZ	RAE1	SNP	Missense_Mutation	20	55940493	G	A	38	98
BRCA	TCGA-EW-A1IZ	BRWD1	SNP	Missense_Mutation	21	40570950	A	T	12	57
BRCA	TCGA-EW-A1IZ	IL17RA	SNP	Missense_Mutation	22	17583062	C	T	18	46
BRCA	TCGA-EW-A1IZ	SLC25A18	SNP	Missense_Mutation	22	18070764	G	A	39	72
BRCA	TCGA-EW-A1IZ	SUSD2	SNP	Missense_Mutation	22	24584283	G	T	35	55
BRCA	TCGA-EW-A1IZ	TNRC6B	SNP	Splice_Site	22	40717093	G	T	33	100
BRCA	TCGA-EW-A1IZ	ADSL	SNP	Silent	22	40755272	G	A	34	53
BRCA	TCGA-EW-A1IZ	SAMM50	SNP	Missense_Mutation	22	44385035	C	A	24	81
BRCA	TCGA-EW-A1IZ	CDPF1	SNP	Missense_Mutation	22	46640993	G	A	40	50
BRCA	TCGA-EW-A1IZ	TTLL8	SNP	Missense_Mutation	22	50471764	G	A	34	79
BRCA	TCGA-EW-A1IZ	MOV10L1	SNP	Silent	22	50584153	C	T	19	32
BRCA	TCGA-EW-A1IZ	NXT2	SNP	Missense_Mutation	23	108780219	C	T	20	41
BRCA	TCGA-EW-A1IZ	RBMXL3	SNP	Silent	23	114425534	T	C	51	35
BRCA	TCGA-EW-A1IZ	GPR112	SNP	Silent	23	135441601	A	G	7	55
BRCA	TCGA-EW-A1IZ	GPM6B	SNP	Missense_Mutation	23	13835019	T	C	56	77
BRCA	TCGA-EW-A1IZ	TMEM185A	SNP	Missense_Mutation	23	148690503	A	G	6	62
BRCA	TCGA-EW-A1IZ	MPP1	SNP	Missense_Mutation	23	154007615	T	C	55	86
BRCA	TCGA-EW-A1IZ	RPS6KA3	SNP	Nonsense_Mutation	23	20213261	G	A	37	65
BRCA	TCGA-EW-A1IZ	ZNF157	SNP	Silent	23	47272048	C	T	27	54
BRCA	TCGA-EW-A1IZ	HUWE1	SNP	Silent	23	53589093	C	T	24	79
BRCA	TCGA-EW-A1IZ	FAM120C	SNP	Missense_Mutation	23	54112279	G	A	39	60
BRCA	TCGA-EW-A1IZ	APEX2	SNP	Missense_Mutation	23	55029489	C	T	27	74
BRCA	TCGA-EW-A1IZ	OPHN1	SNP	Missense_Mutation	23	67273542	G	T	42	51
BRCA	TCGA-EW-A1IZ	MED12	SNP	Silent	23	70357623	C	T	26	62
BRCA	TCGA-EW-A1IZ	RGAG4	SNP	Missense_Mutation	23	71350651	C	T	26	69
BRCA	TCGA-EW-A1IZ	CITED1	SNP	Missense_Mutation	23	71521829	G	A	34	51
BRCA	TCGA-EW-A1IZ	PPARG	SNP	Missense_Mutation	3	12421355	G	A	37	87
BRCA	TCGA-EW-A1IZ	KBTBD12	INS	Frame_Shift_Ins	3	127642256	-	GT	7	40
BRCA	TCGA-EW-A1IZ	MBD4	SNP	Missense_Mutation	3	129158619	C	T	19	42
BRCA	TCGA-EW-A1IZ	ASTE1	DEL	Frame_Shift_Del	3	130743497	AA	-	5	51
BRCA	TCGA-EW-A1IZ	DBR1	INS	In_Frame_Ins	3	137880738	-	CAT	46	45
BRCA	TCGA-EW-A1IZ	FGD5	SNP	Silent	3	14964007	C	T	27	45
BRCA	TCGA-EW-A1IZ	MED12L	SNP	Silent	3	151095876	C	T	28	47
BRCA	TCGA-EW-A1IZ	MED12L	SNP	Missense_Mutation	3	151100490	C	T	27	100
BRCA	TCGA-EW-A1IZ	PIK3CA	SNP	Splice_site	3	178938775	T	A	50	89
BRCA	TCGA-EW-A1IZ	CLCN2	SNP	Missense_Mutation	3	184069902	G	T	33	63
BRCA	TCGA-EW-A1IZ	CLCN2	SNP	Splice_Site	3	184072690	A	G	6	91
BRCA	TCGA-EW-A1IZ	TGFBR2	SNP	Silent	3	30713659	C	T	19	38
BRCA	TCGA-EW-A1IZ	TRANK1	SNP	Missense_Mutation	3	36896783	C	T	27	91
BRCA	TCGA-EW-A1IZ	LRRN1	SNP	Missense_Mutation	3	3886447	G	A	40	100
BRCA	TCGA-EW-A1IZ	DALRD3	SNP	Silent	3	49055971	C	T	22	71
BRCA	TCGA-EW-A1IZ	VPRBP	SNP	Missense_Mutation	3	51452257	C	T	25	100
BRCA	TCGA-EW-A1IZ	PPP3CA	SNP	Missense_Mutation	4	102004357	T	G	56	76
BRCA	TCGA-EW-A1IZ	IL15	SNP	Missense_Mutation	4	142651103	T	A	50	62
BRCA	TCGA-EW-A1IZ	FAM200B	SNP	Nonsense_Mutation	4	15689207	C	T	31	57
BRCA	TCGA-EW-A1IZ	LDB2	SNP	Missense_Mutation	4	16899985	G	A	37	92
BRCA	TCGA-EW-A1IZ	ODZ3	SNP	Silent	4	183676017	A	G	5	23
BRCA	TCGA-EW-A1IZ	GBA3	SNP	Silent	4	22749085	T	C	57	45
BRCA	TCGA-EW-A1IZ	HGFAC	SNP	Silent	4	3445881	C	T	27	32
BRCA	TCGA-EW-A1IZ	N4BP2	SNP	Silent	4	40123163	G	A	40	49
BRCA	TCGA-EW-A1IZ	SHISA3	SNP	Silent	4	42403144	G	A	34	70
BRCA	TCGA-EW-A1IZ	PIGG	SNP	Missense_Mutation	4	515734	C	T	19	45
BRCA	TCGA-EW-A1IZ	EVC	SNP	Silent	4	5721019	G	A	38	30
BRCA	TCGA-EW-A1IZ	PPAT	SNP	Silent	4	57268337	T	C	51	43
BRCA	TCGA-EW-A1IZ	EVC	SNP	Missense_Mutation	4	5795342	T	C	51	59
BRCA	TCGA-EW-A1IZ	UBA6	SNP	Missense_Mutation	4	68528872	C	T	27	81
BRCA	TCGA-EW-A1IZ	LIN54	SNP	Missense_Mutation	4	83891570	T	C	49	50
BRCA	TCGA-EW-A1IZ	WDFY3	SNP	Silent	4	85654705	G	A	34	68
BRCA	TCGA-EW-A1IZ	BRD8	SNP	Missense_Mutation	5	137476347	G	A	40	47
BRCA	TCGA-EW-A1IZ	PCDHB2	SNP	Missense_Mutation	5	140475245	C	T	31	63
BRCA	TCGA-EW-A1IZ	PCDHGB2	SNP	Nonsense_Mutation	5	140741848	C	T	27	49
BRCA	TCGA-EW-A1IZ	PCDHGA9	SNP	Missense_Mutation	5	140783157	C	T	19	56
BRCA	TCGA-EW-A1IZ	PCDHGC5	SNP	Missense_Mutation	5	140869817	A	G	5	60
BRCA	TCGA-EW-A1IZ	RNF14	SNP	Silent	5	141359789	G	A	40	40
BRCA	TCGA-EW-A1IZ	LARP1	SNP	Silent	5	154170243	T	C	55	57
BRCA	TCGA-EW-A1IZ	CYFIP2	SNP	Missense_Mutation	5	156766240	A	G	14	91
BRCA	TCGA-EW-A1IZ	KCNMB1	SNP	Missense_Mutation	5	169805721	G	A	38	68
BRCA	TCGA-EW-A1IZ	RUFY1	SNP	Missense_Mutation	5	179028899	C	T	27	73
BRCA	TCGA-EW-A1IZ	MTMR12	SNP	Silent	5	32230235	G	A	37	38
BRCA	TCGA-EW-A1IZ	NIPBL	SNP	Nonsense_Mutation	5	36985782	C	T	31	60
BRCA	TCGA-EW-A1IZ	OSMR	SNP	Silent	5	38886285	T	C	54	46
BRCA	TCGA-EW-A1IZ	MOCS2	SNP	Missense_Mutation	5	52402960	C	T	31	78
BRCA	TCGA-EW-A1IZ	SKIV2L2	SNP	Missense_Mutation	5	54624574	T	C	59	60
BRCA	TCGA-EW-A1IZ	HTR1A	SNP	Silent	5	63257403	G	A	33	64
BRCA	TCGA-EW-A1IZ	ARHGEF28	SNP	Missense_Mutation	5	73200210	C	A	23	94
BRCA	TCGA-EW-A1IZ	F2R	SNP	Silent	5	76028893	G	A	46	63
BRCA	TCGA-EW-A1IZ	GPR98	SNP	Missense_Mutation	5	90151694	A	G	6	69
BRCA	TCGA-EW-A1IZ	KIAA0825	DEL	In_Frame_Del	5	93727356	CTC	-	32	69
BRCA	TCGA-EW-A1IZ	RFESD	SNP	Silent	5	94991896	T	A	62	53
BRCA	TCGA-EW-A1IZ	SYCP2L	SNP	Silent	6	10911066	A	G	8	50
BRCA	TCGA-EW-A1IZ	ARMC2	SNP	Missense_Mutation	6	109190033	A	G	9	75
BRCA	TCGA-EW-A1IZ	ARMC2	SNP	Missense_Mutation	6	109215690	C	T	27	47
BRCA	TCGA-EW-A1IZ	FAM162B	SNP	Missense_Mutation	6	117083229	C	T	27	59
BRCA	TCGA-EW-A1IZ	ARHGAP18	SNP	Missense_Mutation	6	130031253	A	G	6	74
BRCA	TCGA-EW-A1IZ	RMND1	SNP	Missense_Mutation	6	151766618	T	G	64	46
BRCA	TCGA-EW-A1IZ	OPRM1	SNP	Missense_Mutation	6	154412166	C	T	31	49
BRCA	TCGA-EW-A1IZ	LPA	SNP	Splice_Site	6	161071369	C	T	19	64
BRCA	TCGA-EW-A1IZ	MBOAT1	SNP	Missense_Mutation	6	20152948	C	T	27	99
BRCA	TCGA-EW-A1IZ	HIST1H2BB	SNP	Silent	6	26043595	C	A	23	51
BRCA	TCGA-EW-A1IZ	NKAPL	SNP	Missense_Mutation	6	28227370	G	A	39	39
BRCA	TCGA-EW-A1IZ	ZSCAN12	SNP	Missense_Mutation	6	28359098	T	C	57	43
BRCA	TCGA-EW-A1IZ	TRERF1	SNP	Silent	6	42204015	C	T	23	25
BRCA	TCGA-EW-A1IZ	RUNX2	SNP	Missense_Mutation	6	45399682	G	A	39	100
BRCA	TCGA-EW-A1IZ	CDYL	SNP	Silent	6	4943948	C	T	28	66
BRCA	TCGA-EW-A1IZ	DSP	SNP	Missense_Mutation	6	7575559	C	T	31	69
BRCA	TCGA-EW-A1IZ	ELOVL4	SNP	Missense_Mutation	6	80656915	A	G	7	58
BRCA	TCGA-EW-A1IZ	ZNF292	SNP	Nonsense_Mutation	6	87966306	C	T	21	64
BRCA	TCGA-EW-A1IZ	MDN1	SNP	Missense_Mutation	6	90461233	C	A	24	50
BRCA	TCGA-EW-A1IZ	UFL1	SNP	Missense_Mutation	6	97001369	C	T	19	79
BRCA	TCGA-EW-A1IZ	MUC12	INS	Frame_Shift_Ins	7	100647332	-	A	26	61
BRCA	TCGA-EW-A1IZ	SYPL1	SNP	Silent	7	105733467	C	T	27	46
BRCA	TCGA-EW-A1IZ	THSD7A	SNP	Silent	7	11464340	C	T	25	50
BRCA	TCGA-EW-A1IZ	CTTNBP2	SNP	Missense_Mutation	7	117513445	C	T	31	64
BRCA	TCGA-EW-A1IZ	FLNC	SNP	Missense_Mutation	7	128478072	G	A	38	76
BRCA	TCGA-EW-A1IZ	DGKB	SNP	Splice_Site	7	14758165	A	G	14	79
BRCA	TCGA-EW-A1IZ	EZH2	SNP	Silent	7	148525902	G	A	40	39
BRCA	TCGA-EW-A1IZ	KCNH2	SNP	Missense_Mutation	7	150654410	C	T	31	81
BRCA	TCGA-EW-A1IZ	ABCF2	SNP	Missense_Mutation	7	150915925	T	C	56	87
BRCA	TCGA-EW-A1IZ	RBM33	SNP	Missense_Mutation	7	155567691	A	G	16	78
BRCA	TCGA-EW-A1IZ	NFE2L3	SNP	Silent	7	26225088	T	C	63	48
BRCA	TCGA-EW-A1IZ	CREB5	SNP	Missense_Mutation	7	28610052	C	T	31	56
BRCA	TCGA-EW-A1IZ	PION	SNP	Missense_Mutation	7	76984734	C	T	29	50
BRCA	TCGA-EW-A1IZ	HGF	SNP	Silent	7	81339534	C	T	31	56
BRCA	TCGA-EW-A1IZ	HEATR2	SNP	Missense_Mutation	7	819661	C	G	28	67
BRCA	TCGA-EW-A1IZ	PCLO	SNP	Missense_Mutation	7	82763887	A	C	14	46
BRCA	TCGA-EW-A1IZ	OCM2	SNP	Missense_Mutation	7	97616394	G	A	38	62
BRCA	TCGA-EW-A1IZ	BAIAP2L1	SNP	Silent	7	97939890	G	A	40	51
BRCA	TCGA-EW-A1IZ	TRRAP	SNP	Silent	7	98574180	G	A	38	20
BRCA	TCGA-EW-A1IZ	ODF1	SNP	Missense_Mutation	8	103572819	C	T	27	58
BRCA	TCGA-EW-A1IZ	DCSTAMP	SNP	Missense_Mutation	8	105367367	A	G	7	50
BRCA	TCGA-EW-A1IZ	PKHD1L1	SNP	Missense_Mutation	8	110424608	C	T	18	64
BRCA	TCGA-EW-A1IZ	DEFB136	SNP	Missense_Mutation	8	11831477	G	A	43	56
BRCA	TCGA-EW-A1IZ	ZHX1	SNP	Missense_Mutation	8	124267675	A	G	2	53
BRCA	TCGA-EW-A1IZ	ST3GAL1	SNP	Missense_Mutation	8	134477024	G	A	41	67
BRCA	TCGA-EW-A1IZ	TOP1MT	SNP	Silent	8	144406751	C	T	25	31
BRCA	TCGA-EW-A1IZ	ARHGAP39	SNP	Silent	8	145830970	C	T	30	57
BRCA	TCGA-EW-A1IZ	LOXL2	SNP	Silent	8	23198633	G	A	40	55
BRCA	TCGA-EW-A1IZ	HOOK3	INS	Frame_Shift_Ins	8	42868496	-	AG	29	98
BRCA	TCGA-EW-A1IZ	NCOA2	SNP	Missense_Mutation	8	71126143	T	A	62	79
BRCA	TCGA-EW-A1IZ	CNGB3	SNP	Missense_Mutation	8	87683247	G	A	38	60
BRCA	TCGA-EW-A1IZ	CDK5RAP2	SNP	Missense_Mutation	9	123220813	C	T	27	48
BRCA	TCGA-EW-A1IZ	TTC16	SNP	Missense_Mutation	9	130485513	C	T	27	74
BRCA	TCGA-EW-A1IZ	C8G	SNP	Silent	9	139840387	G	T	41	53
BRCA	TCGA-EW-A1IZ	PNPLA7	SNP	Missense_Mutation	9	140361796	C	T	25	51
BRCA	TCGA-EW-A1IZ	NFX1	SNP	Missense_Mutation	9	33294960	T	C	51	44
BRCA	TCGA-EW-A1IZ	FAM219A	SNP	Missense_Mutation	9	34402458	C	T	19	95
BRCA	TCGA-EW-A1IZ	PGM5	SNP	Missense_Mutation	9	71144508	T	C	50	84
BRCA	TCGA-EW-A1IZ	TMC1	SNP	Missense_Mutation	9	75445589	G	A	46	69
BRCA	TCGA-EW-A1IZ	IARS	SNP	Missense_Mutation	9	94991394	G	A	35	54
BRCA	TCGA-EW-A1IZ	FANCC	SNP	Silent	9	97873907	A	G	10	34
BRCA	TCGA-EW-A1IZ	ERCC6L2	SNP	Missense_Mutation	9	98703810	A	G	4	65
BRCA	TCGA-EW-A1IZ	CTSL2	SNP	Missense_Mutation	9	99797876	C	T	27	91
BRCA	TCGA-EW-A1J1	DPT	SNP	Missense_Mutation	1	168683522	A	T	6	91
BRCA	TCGA-EW-A1J1	NAV1	SNP	Missense_Mutation	1	201757631	C	T	23	100
BRCA	TCGA-EW-A1J1	SF1	SNP	Silent	11	64535092	C	T	31	57
BRCA	TCGA-EW-A1J1	EHD1	SNP	Missense_Mutation	11	64645813	A	C	3	72
BRCA	TCGA-EW-A1J1	UHRF1BP1L	SNP	Silent	12	100452034	T	A	63	54
BRCA	TCGA-EW-A1J1	ATP2A2	SNP	Silent	12	110780236	C	T	19	49
BRCA	TCGA-EW-A1J1	RYR3	SNP	Silent	15	33954810	G	A	37	40
BRCA	TCGA-EW-A1J1	CLEC16A	SNP	Silent	16	11071088	G	T	41	53
BRCA	TCGA-EW-A1J1	TPSB2	SNP	Missense_Mutation	16	1279438	C	T	27	46
BRCA	TCGA-EW-A1J1	NCOR1	DEL	Frame_Shift_Del	17	16029431	TTTCT	-	56	62
BRCA	TCGA-EW-A1J1	MYCBPAP	SNP	Missense_Mutation	17	48594830	C	A	26	53
BRCA	TCGA-EW-A1J1	EPG5	SNP	Missense_Mutation	18	43484051	C	T	27	82
BRCA	TCGA-EW-A1J1	UNC80	SNP	Silent	2	210681761	G	A	38	39
BRCA	TCGA-EW-A1J1	PLB1	SNP	Silent	2	28796125	C	A	21	51
BRCA	TCGA-EW-A1J1	SOS1	SNP	Silent	2	39239446	G	A	41	61
BRCA	TCGA-EW-A1J1	SNRNP200	SNP	Missense_Mutation	2	96959238	G	T	45	100
BRCA	TCGA-EW-A1J1	ELFN2	SNP	Missense_Mutation	22	37770887	G	A	39	53
BRCA	TCGA-EW-A1J1	POLA1	SNP	Splice_site	23	24722586	G	T	35	68
BRCA	TCGA-EW-A1J1	HDX	SNP	Missense_Mutation	23	83723776	G	T	48	93
BRCA	TCGA-EW-A1J1	PIK3CA	SNP	Missense_Mutation	3	178952075	A	T	9	91
BRCA	TCGA-EW-A1J1	NIPAL4	SNP	Missense_Mutation	5	156899736	C	T	18	100
BRCA	TCGA-EW-A1J1	MAP3K1	INS	Frame_Shift_Ins	5	56177010	-	ATAG	61	47
BRCA	TCGA-EW-A1J1	NSA2	DNP	Missense_Mutation	5	74066543	AA	GC	9	90
BRCA	TCGA-EW-A1J1	ALDH5A1	SNP	Silent	6	24528350	G	C	48	40
BRCA	TCGA-EW-A1J1	TREM1	SNP	Missense_Mutation	6	41250151	G	T	39	52
BRCA	TCGA-EW-A1J2	ATP8B2	SNP	Missense_Mutation	1	154303923	C	T	23	84
BRCA	TCGA-EW-A1J2	SCMH1	SNP	Silent	1	41582666	C	T	19	40
BRCA	TCGA-EW-A1J2	C10orf120	SNP	Missense_Mutation	10	124459255	T	C	53	50
BRCA	TCGA-EW-A1J2	ZMIZ1	SNP	Missense_Mutation	10	81063837	G	T	44	100
BRCA	TCGA-EW-A1J2	TLE3	SNP	Missense_Mutation	15	70345629	G	T	48	76
BRCA	TCGA-EW-A1J2	POLG	INS	Frame_Shift_Ins	15	89866675	-	T	6	91
BRCA	TCGA-EW-A1J2	POLG	INS	In_Frame_Ins	15	89866678	-	CCTTAC	58	91
BRCA	TCGA-EW-A1J2	CBFB	SNP	Missense_Mutation	16	67100607	T	A	52	89
BRCA	TCGA-EW-A1J2	CDH1	SNP	Nonsense_Mutation	16	68857367	A	T	5	77
BRCA	TCGA-EW-A1J2	G6PC	SNP	Silent	17	41063380	C	T	23	42
BRCA	TCGA-EW-A1J2	KIF2B	SNP	Silent	17	51901204	C	T	31	49
BRCA	TCGA-EW-A1J2	KIF19	SNP	Silent	17	72341085	C	T	27	33
BRCA	TCGA-EW-A1J2	PIGN	SNP	Missense_Mutation	18	59749915	G	A	37	92
BRCA	TCGA-EW-A1J2	LCT	SNP	Nonsense_Mutation	2	136548358	C	T	18	78
BRCA	TCGA-EW-A1J2	EIF2S2	SNP	Missense_Mutation	20	32678367	C	T	32	99
BRCA	TCGA-EW-A1J2	TP53TG5	SNP	Missense_Mutation	20	44003687	G	C	41	51
BRCA	TCGA-EW-A1J2	BRS3	SNP	Missense_Mutation	23	135570652	C	T	23	100
BRCA	TCGA-EW-A1J2	PIK3CA	SNP	Missense_Mutation	3	178952085	A	G	8	91
BRCA	TCGA-EW-A1J2	KCNMB3	SNP	Silent	3	178984451	C	T	30	55
BRCA	TCGA-EW-A1J2	MUC4	SNP	Missense_Mutation	3	195510937	G	C	46	49
BRCA	TCGA-EW-A1J2	OR5K2	SNP	Silent	3	98217148	C	T	32	64
BRCA	TCGA-EW-A1J2	TNXB	SNP	Splice_Site	6	32010230	A	C	6	72
BRCA	TCGA-EW-A1J2	CLDN12	SNP	Missense_Mutation	7	90042451	T	A	58	69
BRCA	TCGA-EW-A1J2	PEG10	SNP	Missense_Mutation	7	94293359	G	A	37	56
BRCA	TCGA-EW-A1J2	CRISPLD1	SNP	Missense_Mutation	8	75927084	C	T	27	70
BRCA	TCGA-EW-A1J2	TESK1	SNP	Missense_Mutation	9	35608979	A	G	4	38
BRCA	TCGA-EW-A1J3	NBPF9	SNP	Missense_Mutation	1	144823868	T	G	57	47
BRCA	TCGA-EW-A1J3	NES	SNP	Missense_Mutation	1	156639358	T	C	60	46
BRCA	TCGA-EW-A1J3	CCDC6	SNP	Missense_Mutation	10	61552827	G	A	40	98
BRCA	TCGA-EW-A1J3	BIVM	SNP	Splice_site	13	103490993	A	G	12	51
BRCA	TCGA-EW-A1J3	SHISA9	SNP	Missense_Mutation	16	13010598	A	G	11	76
BRCA	TCGA-EW-A1J3	CDH1	SNP	Nonsense_Mutation	16	68772218	C	T	21	53
BRCA	TCGA-EW-A1J3	HPR	DEL	Frame_Shift_Del	16	72107680	TG	-	51	55
BRCA	TCGA-EW-A1J3	EFCAB5	SNP	Missense_Mutation	17	28378166	G	C	42	53
BRCA	TCGA-EW-A1J3	ZPBP2	SNP	Splice_Site	17	38031506	G	A	35	81
BRCA	TCGA-EW-A1J3	MED24	SNP	Missense_Mutation	17	38189359	C	T	24	100
BRCA	TCGA-EW-A1J3	MED24	SNP	Missense_Mutation	17	38189431	C	G	30	100
BRCA	TCGA-EW-A1J3	MED24	SNP	Missense_Mutation	17	38189690	C	G	28	52
BRCA	TCGA-EW-A1J3	TIMM50	SNP	Missense_Mutation	19	39980425	A	C	6	56
BRCA	TCGA-EW-A1J3	VAV1	SNP	Missense_Mutation	19	6850694	G	A	44	64
BRCA	TCGA-EW-A1J3	MUC16	SNP	Silent	19	9038120	T	A	51	46
BRCA	TCGA-EW-A1J3	MARCO	SNP	Missense_Mutation	2	119750834	C	A	28	64
BRCA	TCGA-EW-A1J3	TANK	SNP	Missense_Mutation	2	162087536	C	T	27	50
BRCA	TCGA-EW-A1J3	SPHKAP	SNP	Missense_Mutation	2	228884249	A	C	9	51
BRCA	TCGA-EW-A1J3	OTOF	SNP	Missense_Mutation	2	26697524	C	T	22	100
BRCA	TCGA-EW-A1J3	MAVS	SNP	Silent	20	3835301	G	A	36	50
BRCA	TCGA-EW-A1J3	PIWIL3	SNP	Silent	22	25158416	C	T	32	38
BRCA	TCGA-EW-A1J3	MUC4	SNP	Missense_Mutation	3	195505801	G	A	46	34
BRCA	TCGA-EW-A1J3	ABCE1	SNP	Missense_Mutation	4	146038513	A	G	16	93
BRCA	TCGA-EW-A1J3	RAP1GDS1	SNP	Missense_Mutation	4	99355161	A	G	13	61
BRCA	TCGA-EW-A1J3	SLC6A19	SNP	Nonsense_Mutation	5	1216682	C	T	27	48
BRCA	TCGA-EW-A1J3	FLT4	SNP	Missense_Mutation	5	180056385	T	C	58	75
BRCA	TCGA-EW-A1J3	ZFR	SNP	Silent	5	32364331	C	T	32	56
BRCA	TCGA-EW-A1J3	PRDM1	SNP	Missense_Mutation	6	106536124	G	A	33	59
BRCA	TCGA-EW-A1J3	NQO2	SNP	Missense_Mutation	6	3019762	G	C	34	52
BRCA	TCGA-EW-A1J3	RADIL	SNP	Splice_Site	7	4917234	A	C	6	88
BRCA	TCGA-EW-A1J3	VPS13B	SNP	Missense_Mutation	8	100789055	A	G	2	79
BRCA	TCGA-EW-A1J5	CELSR2	SNP	Silent	1	109812082	G	T	45	64
BRCA	TCGA-EW-A1J5	CELSR2	SNP	Nonsense_Mutation	1	109813147	G	T	45	83
BRCA	TCGA-EW-A1J5	CELSR2	SNP	Missense_Mutation	1	109813557	G	A	40	97
BRCA	TCGA-EW-A1J5	CELSR2	SNP	Missense_Mutation	1	109813628	G	C	41	97
BRCA	TCGA-EW-A1J5	CELSR2	SNP	Missense_Mutation	1	109813902	G	C	45	83
BRCA	TCGA-EW-A1J5	SPAG17	SNP	Missense_Mutation	1	118558619	G	C	41	55
BRCA	TCGA-EW-A1J5	PLOD1	SNP	Missense_Mutation	1	12030796	G	C	45	100
BRCA	TCGA-EW-A1J5	CCNL2	SNP	Missense_Mutation	1	1328173	C	T	29	89
BRCA	TCGA-EW-A1J5	NBPF10	SNP	Nonsense_Mutation	1	145368577	G	T	45	56
BRCA	TCGA-EW-A1J5	RNF115	SNP	Missense_Mutation	1	145663210	C	G	32	61
BRCA	TCGA-EW-A1J5	ANP32E	SNP	Missense_Mutation	1	150199026	C	G	30	76
BRCA	TCGA-EW-A1J5	ECM1	SNP	Missense_Mutation	1	150482631	C	G	32	56
BRCA	TCGA-EW-A1J5	ANXA9	SNP	Silent	1	150967079	G	A	45	59
BRCA	TCGA-EW-A1J5	FLG2	SNP	Missense_Mutation	1	152325364	G	C	33	73
BRCA	TCGA-EW-A1J5	CHTOP	SNP	Missense_Mutation	1	153617600	G	A	37	76
BRCA	TCGA-EW-A1J5	KAZN	SNP	Silent	1	15439019	C	T	29	54
BRCA	TCGA-EW-A1J5	SYT11	SNP	Missense_Mutation	1	155838164	C	T	32	98
BRCA	TCGA-EW-A1J5	CCT3	SNP	Nonsense_Mutation	1	156303431	G	A	45	80
BRCA	TCGA-EW-A1J5	OR10K2	SNP	Silent	1	158390018	C	T	29	52
BRCA	TCGA-EW-A1J5	NIT1	SNP	Missense_Mutation	1	161088976	G	A	48	77
BRCA	TCGA-EW-A1J5	ADAMTS4	SNP	Silent	1	161166344	C	A	29	59
BRCA	TCGA-EW-A1J5	FCGR3B	SNP	Missense_Mutation	1	161596055	G	A	45	39
BRCA	TCGA-EW-A1J5	F5	SNP	Missense_Mutation	1	169510871	G	C	34	50
BRCA	TCGA-EW-A1J5	MYOC	SNP	Missense_Mutation	1	171621262	C	T	29	49
BRCA	TCGA-EW-A1J5	SUCO	SNP	Missense_Mutation	1	172571319	C	T	29	71
BRCA	TCGA-EW-A1J5	RASAL2	SNP	Missense_Mutation	1	178410736	G	C	33	88
BRCA	TCGA-EW-A1J5	ARHGEF10L	SNP	Silent	1	17950986	C	T	31	55
BRCA	TCGA-EW-A1J5	TOR1AIP1	SNP	Missense_Mutation	1	179887000	G	C	33	76
BRCA	TCGA-EW-A1J5	CEP350	SNP	Missense_Mutation	1	179989616	C	T	29	99
BRCA	TCGA-EW-A1J5	TRMT1L	SNP	Missense_Mutation	1	185120963	C	G	29	56
BRCA	TCGA-EW-A1J5	IVNS1ABP	SNP	Silent	1	185276197	C	T	25	52
BRCA	TCGA-EW-A1J5	HMCN1	SNP	Missense_Mutation	1	186057115	G	A	41	100
BRCA	TCGA-EW-A1J5	TPR	SNP	Missense_Mutation	1	186303607	G	C	41	78
BRCA	TCGA-EW-A1J5	PTGS2	SNP	Missense_Mutation	1	186648206	C	T	29	100
BRCA	TCGA-EW-A1J5	NR5A2	SNP	Missense_Mutation	1	200017590	C	T	29	96
BRCA	TCGA-EW-A1J5	PIK3C2B	SNP	Silent	1	204412635	C	A	29	57
BRCA	TCGA-EW-A1J5	HP1BP3	SNP	Missense_Mutation	1	21072124	C	G	32	68
BRCA	TCGA-EW-A1J5	PTPN14	SNP	Missense_Mutation	1	214557650	C	G	32	45
BRCA	TCGA-EW-A1J5	DISP1	SNP	Missense_Mutation	1	223177316	G	C	41	86
BRCA	TCGA-EW-A1J5	SUSD4	SNP	Missense_Mutation	1	223396894	C	T	31	91
BRCA	TCGA-EW-A1J5	CAPN8	SNP	Silent	1	223718144	G	A	45	52
BRCA	TCGA-EW-A1J5	HIST3H3	SNP	Missense_Mutation	1	228612849	C	T	29	92
BRCA	TCGA-EW-A1J5	ABCB10	SNP	Missense_Mutation	1	229683381	G	C	33	75
BRCA	TCGA-EW-A1J5	RBM34	SNP	Silent	1	235316075	C	A	29	65
BRCA	TCGA-EW-A1J5	RYR2	SNP	Missense_Mutation	1	237664064	G	A	45	100
BRCA	TCGA-EW-A1J5	ZP4	SNP	Missense_Mutation	1	238053239	C	T	29	53
BRCA	TCGA-EW-A1J5	OR2L8	SNP	Silent	1	248113011	C	G	29	53
BRCA	TCGA-EW-A1J5	OR2AK2	SNP	Missense_Mutation	1	248129439	C	A	18	68
BRCA	TCGA-EW-A1J5	OR2T2	SNP	Silent	1	248616623	C	T	29	51
BRCA	TCGA-EW-A1J5	EPB41	SNP	Missense_Mutation	1	29314172	G	C	33	88
BRCA	TCGA-EW-A1J5	NPHP4	SNP	Missense_Mutation	1	5925232	G	C	41	95
BRCA	TCGA-EW-A1J5	CHD5	SNP	Missense_Mutation	1	6202253	G	A	37	70
BRCA	TCGA-EW-A1J5	PDE4B	SNP	Silent	1	66834514	C	T	21	65
BRCA	TCGA-EW-A1J5	SGIP1	SNP	Missense_Mutation	1	67155912	C	A	30	99
BRCA	TCGA-EW-A1J5	SORCS1	SNP	Silent	10	108536409	C	T	29	61
BRCA	TCGA-EW-A1J5	PNLIPRP3	SNP	Nonsense_Mutation	10	118196375	C	T	29	60
BRCA	TCGA-EW-A1J5	PTPRE	SNP	Missense_Mutation	10	129866396	G	A	37	89
BRCA	TCGA-EW-A1J5	MKI67	SNP	Silent	10	129901071	C	T	26	51
BRCA	TCGA-EW-A1J5	TUBGCP2	SNP	Missense_Mutation	10	135106636	C	G	30	96
BRCA	TCGA-EW-A1J5	ARMC3	SNP	Missense_Mutation	10	23250863	C	G	32	44
BRCA	TCGA-EW-A1J5	DIP2C	SNP	Missense_Mutation	10	323392	C	G	30	100
BRCA	TCGA-EW-A1J5	GJD4	SNP	Missense_Mutation	10	35896648	C	G	32	61
BRCA	TCGA-EW-A1J5	ERCC6	SNP	Missense_Mutation	10	50678569	C	G	28	56
BRCA	TCGA-EW-A1J5	TSPAN15	SNP	Missense_Mutation	10	71255361	C	A	30	54
BRCA	TCGA-EW-A1J5	KIAA0913	SNP	Silent	10	75559813	G	A	45	68
BRCA	TCGA-EW-A1J5	SORBS1	SNP	Missense_Mutation	10	97110968	C	T	32	100
BRCA	TCGA-EW-A1J5	OPALIN	SNP	Missense_Mutation	10	98108050	G	A	33	63
BRCA	TCGA-EW-A1J5	CD3E	SNP	Missense_Mutation	11	118179150	G	A	33	50
BRCA	TCGA-EW-A1J5	MICALCL	SNP	Missense_Mutation	11	12315771	C	T	30	53
BRCA	TCGA-EW-A1J5	SCN3B	SNP	Missense_Mutation	11	123508916	C	G	31	98
BRCA	TCGA-EW-A1J5	NCAPD3	SNP	Missense_Mutation	11	134029897	C	G	29	100
BRCA	TCGA-EW-A1J5	USH1C	SNP	Splice_site	11	17522697	C	G	30	79
BRCA	TCGA-EW-A1J5	PKP3	SNP	Missense_Mutation	11	403681	C	T	23	73
BRCA	TCGA-EW-A1J5	OR52K2	SNP	Missense_Mutation	11	4471264	C	T	32	81
BRCA	TCGA-EW-A1J5	NR1H3	SNP	Silent	11	47289528	C	T	29	53
BRCA	TCGA-EW-A1J5	OR4C16	SNP	Missense_Mutation	11	55340509	G	C	33	50
BRCA	TCGA-EW-A1J5	OR5I1	SNP	Silent	11	55703532	G	A	45	48
BRCA	TCGA-EW-A1J5	OR5F1	SNP	Missense_Mutation	11	55761969	T	C	50	49
BRCA	TCGA-EW-A1J5	OR5T2	SNP	Silent	11	56000014	G	A	33	53
BRCA	TCGA-EW-A1J5	TRIM22	SNP	Silent	11	5718549	C	T	29	48
BRCA	TCGA-EW-A1J5	ZP1	SNP	Missense_Mutation	11	60637194	C	G	32	53
BRCA	TCGA-EW-A1J5	COX8A	SNP	Silent	11	63742177	C	T	28	63
BRCA	TCGA-EW-A1J5	CNIH2	SNP	Silent	11	66050245	G	A	45	53
BRCA	TCGA-EW-A1J5	NPAS4	SNP	Silent	11	66188755	C	T	30	56
BRCA	TCGA-EW-A1J5	NPAS4	SNP	Silent	11	66192503	C	T	29	88
BRCA	TCGA-EW-A1J5	MRPL11	SNP	Silent	11	66203553	C	T	32	76
BRCA	TCGA-EW-A1J5	SPTBN2	SNP	Missense_Mutation	11	66460511	C	T	31	68
BRCA	TCGA-EW-A1J5	LRP5	SNP	Missense_Mutation	11	68181258	G	A	45	99
BRCA	TCGA-EW-A1J5	SYTL2	SNP	Missense_Mutation	11	85445351	C	T	29	71
BRCA	TCGA-EW-A1J5	CLEC2A	SNP	Missense_Mutation	12	10066206	C	G	29	64
BRCA	TCGA-EW-A1J5	STAB2	SNP	Splice_Site	12	104146997	G	C	33	95
BRCA	TCGA-EW-A1J5	ACACB	SNP	Splice_Site	12	109673117	G	C	33	96
BRCA	TCGA-EW-A1J5	FOXN4	SNP	Missense_Mutation	12	109725248	G	C	45	73
BRCA	TCGA-EW-A1J5	UBE3B	SNP	Silent	12	109958979	C	G	32	47
BRCA	TCGA-EW-A1J5	RPH3A	SNP	Missense_Mutation	12	113285625	G	A	33	94
BRCA	TCGA-EW-A1J5	CCDC60	SNP	Missense_Mutation	12	119960749	G	A	33	51
BRCA	TCGA-EW-A1J5	CAMKK2	SNP	Missense_Mutation	12	121693401	C	T	32	94
BRCA	TCGA-EW-A1J5	RILPL1	SNP	Missense_Mutation	12	123983136	C	G	32	68
BRCA	TCGA-EW-A1J5	DNAH10	SNP	Silent	12	124397850	C	T	29	100
BRCA	TCGA-EW-A1J5	DNAH10	SNP	Missense_Mutation	12	124408387	C	G	29	100
BRCA	TCGA-EW-A1J5	SFSWAP	SNP	Missense_Mutation	12	132237743	G	A	41	100
BRCA	TCGA-EW-A1J5	FKBP4	SNP	Silent	12	2910381	G	A	33	70
BRCA	TCGA-EW-A1J5	DNM1L	SNP	Nonsense_Mutation	12	32895575	C	T	29	98
BRCA	TCGA-EW-A1J5	LRRK2	SNP	Missense_Mutation	12	40681261	C	G	32	56
BRCA	TCGA-EW-A1J5	ZNF385A	SNP	Silent	12	54778269	G	A	41	57
BRCA	TCGA-EW-A1J5	OS9	SNP	Splice_Site	12	58088532	G	A	33	89
BRCA	TCGA-EW-A1J5	VWF	SNP	Silent	12	6092323	G	A	45	54
BRCA	TCGA-EW-A1J5	NUP107	SNP	Silent	12	69094517	G	A	45	45
BRCA	TCGA-EW-A1J5	ATN1	SNP	Missense_Mutation	12	7046168	C	G	29	68
BRCA	TCGA-EW-A1J5	PLEKHG7	SNP	Missense_Mutation	12	93149662	G	C	33	55
BRCA	TCGA-EW-A1J5	TPP2	SNP	Silent	13	103299562	G	A	33	57
BRCA	TCGA-EW-A1J5	MCF2L	SNP	Missense_Mutation	13	113748898	G	C	33	32
BRCA	TCGA-EW-A1J5	TMCO3	SNP	Missense_Mutation	13	114188406	C	G	32	92
BRCA	TCGA-EW-A1J5	ATP4B	SNP	Missense_Mutation	13	114309253	C	G	30	67
BRCA	TCGA-EW-A1J5	ATP4B	SNP	Missense_Mutation	13	114312444	C	G	30	83
BRCA	TCGA-EW-A1J5	NUPL1	SNP	Missense_Mutation	13	25901082	G	C	45	100
BRCA	TCGA-EW-A1J5	RNF6	SNP	Silent	13	26788189	C	T	32	74
BRCA	TCGA-EW-A1J5	PDS5B	SNP	Missense_Mutation	13	33281154	G	A	33	100
BRCA	TCGA-EW-A1J5	MAB21L1	SNP	Missense_Mutation	13	36050059	C	T	31	100
BRCA	TCGA-EW-A1J5	CCDC169	SNP	Splice_site	13	36805331	C	G	29	54
BRCA	TCGA-EW-A1J5	FAM48A	SNP	Missense_Mutation	13	37584769	C	T	31	69
BRCA	TCGA-EW-A1J5	RCBTB1	SNP	Missense_Mutation	13	50108389	C	G	32	99
BRCA	TCGA-EW-A1J5	CDC42BPB	SNP	Silent	14	103466003	G	A	45	60
BRCA	TCGA-EW-A1J5	AHNAK2	SNP	Silent	14	105406830	G	C	45	44
BRCA	TCGA-EW-A1J5	AHNAK2	SNP	Missense_Mutation	14	105413693	G	C	45	50
BRCA	TCGA-EW-A1J5	MYH6	SNP	Missense_Mutation	14	23858138	C	T	30	98
BRCA	TCGA-EW-A1J5	MYH6	SNP	Silent	14	23867983	G	C	45	53
BRCA	TCGA-EW-A1J5	FOXA1	SNP	Missense_Mutation	14	38061312	T	C	58	85
BRCA	TCGA-EW-A1J5	ATG14	SNP	Missense_Mutation	14	55848870	C	T	29	87
BRCA	TCGA-EW-A1J5	KIAA0586	SNP	Missense_Mutation	14	58895061	C	G	29	64
BRCA	TCGA-EW-A1J5	PPM1A	SNP	Missense_Mutation	14	60750229	G	A	45	86
BRCA	TCGA-EW-A1J5	SYNE2	SNP	Missense_Mutation	14	64691728	G	A	45	52
BRCA	TCGA-EW-A1J5	SYNE2	SNP	Splice_site	14	64692244	G	C	33	57
BRCA	TCGA-EW-A1J5	PCNX	SNP	Silent	14	71540426	C	T	32	63
BRCA	TCGA-EW-A1J5	SIPA1L1	SNP	Silent	14	72139289	C	A	29	56
BRCA	TCGA-EW-A1J5	CCDC88C	SNP	Missense_Mutation	14	91757388	C	T	30	100
BRCA	TCGA-EW-A1J5	LRRK1	SNP	Silent	15	101595248	C	T	32	62
BRCA	TCGA-EW-A1J5	GABRA5	SNP	Missense_Mutation	15	27185157	G	A	45	98
BRCA	TCGA-EW-A1J5	HERC2	SNP	Missense_Mutation	15	28369301	G	C	41	100
BRCA	TCGA-EW-A1J5	HERC2	SNP	Missense_Mutation	15	28391398	C	T	19	100
BRCA	TCGA-EW-A1J5	APBA2	SNP	Missense_Mutation	15	29346361	G	A	45	93
BRCA	TCGA-EW-A1J5	RYR3	SNP	Silent	15	34014980	C	T	31	46
BRCA	TCGA-EW-A1J5	ZFYVE19	SNP	Missense_Mutation	15	41105568	G	A	45	83
BRCA	TCGA-EW-A1J5	MGA	SNP	Missense_Mutation	15	42041852	C	T	18	49
BRCA	TCGA-EW-A1J5	UBR1	SNP	Missense_Mutation	15	43281144	G	C	45	52
BRCA	TCGA-EW-A1J5	CATSPER2	SNP	Missense_Mutation	15	43939258	C	T	21	68
BRCA	TCGA-EW-A1J5	DUOX2	SNP	Silent	15	45389584	G	A	45	55
BRCA	TCGA-EW-A1J5	MYEF2	SNP	Nonsense_Mutation	15	48443700	G	A	45	96
BRCA	TCGA-EW-A1J5	VPS13C	SNP	Missense_Mutation	15	62238536	C	T	29	42
BRCA	TCGA-EW-A1J5	HERC1	SNP	Missense_Mutation	15	63947976	C	G	32	85
BRCA	TCGA-EW-A1J5	SCAPER	SNP	Missense_Mutation	15	77067266	G	A	33	67
BRCA	TCGA-EW-A1J5	C15orf26	SNP	Missense_Mutation	15	81436030	C	G	24	54
BRCA	TCGA-EW-A1J5	ZC3H7A	SNP	Missense_Mutation	16	11861345	C	T	32	100
BRCA	TCGA-EW-A1J5	SHISA9	SNP	Silent	16	13002435	C	G	32	49
BRCA	TCGA-EW-A1J5	NOMO1	SNP	Nonsense_Mutation	16	14966096	C	A	29	74
BRCA	TCGA-EW-A1J5	SMG1	SNP	Missense_Mutation	16	18903670	G	A	37	80
BRCA	TCGA-EW-A1J5	XPO6	SNP	Silent	16	28112956	G	A	41	50
BRCA	TCGA-EW-A1J5	ITFG3	SNP	Missense_Mutation	16	309544	C	G	32	66
BRCA	TCGA-EW-A1J5	ABCC12	SNP	Missense_Mutation	16	48162479	G	A	45	49
BRCA	TCGA-EW-A1J5	FAM65A	SNP	Missense_Mutation	16	67578631	G	A	41	100
BRCA	TCGA-EW-A1J5	FAM65A	SNP	Missense_Mutation	16	67578880	G	A	39	62
BRCA	TCGA-EW-A1J5	CDH1	INS	Frame_Shift_Ins	16	68849593	-	G	64	67
BRCA	TCGA-EW-A1J5	ADAMTS18	SNP	Silent	16	77327078	C	T	32	54
BRCA	TCGA-EW-A1J5	NCOR1	SNP	Silent	17	16062146	C	T	32	60
BRCA	TCGA-EW-A1J5	EPN2	SNP	Nonsense_Mutation	17	19215401	C	T	17	96
BRCA	TCGA-EW-A1J5	TADA2A	SNP	Missense_Mutation	17	35827573	G	A	37	98
BRCA	TCGA-EW-A1J5	PIP4K2B	SNP	Silent	17	36955585	C	T	32	74
BRCA	TCGA-EW-A1J5	STARD3	SNP	Missense_Mutation	17	37809924	C	T	32	97
BRCA	TCGA-EW-A1J5	GRB7	SNP	Missense_Mutation	17	37898674	G	C	33	73
BRCA	TCGA-EW-A1J5	KRTAP9-2	SNP	Missense_Mutation	17	39383235	C	G	30	54
BRCA	TCGA-EW-A1J5	KRT19	SNP	Nonsense_Mutation	17	39684181	C	A	31	60
BRCA	TCGA-EW-A1J5	STAT5A	SNP	Missense_Mutation	17	40447795	G	C	33	77
BRCA	TCGA-EW-A1J5	GFAP	SNP	Silent	17	42988702	G	A	43	44
BRCA	TCGA-EW-A1J5	CAMTA2	SNP	Missense_Mutation	17	4872102	C	T	29	54
BRCA	TCGA-EW-A1J5	OR4D2	SNP	Missense_Mutation	17	56247698	C	T	17	72
BRCA	TCGA-EW-A1J5	ABCA8	SNP	Missense_Mutation	17	66924181	C	G	29	64
BRCA	TCGA-EW-A1J5	RECQL5	SNP	Missense_Mutation	17	73647280	G	T	33	78
BRCA	TCGA-EW-A1J5	FBF1	SNP	Missense_Mutation	17	73910890	C	T	31	73
BRCA	TCGA-EW-A1J5	EVPL	SNP	Missense_Mutation	17	74013937	C	T	29	81
BRCA	TCGA-EW-A1J5	QRICH2	SNP	Nonsense_Mutation	17	74277977	G	A	39	59
BRCA	TCGA-EW-A1J5	ENPP7	SNP	Missense_Mutation	17	77710899	G	A	45	92
BRCA	TCGA-EW-A1J5	EIF4A3	SNP	Missense_Mutation	17	78110058	G	A	33	65
BRCA	TCGA-EW-A1J5	B3GNTL1	SNP	Silent	17	80915078	G	A	33	57
BRCA	TCGA-EW-A1J5	GREB1L	SNP	Missense_Mutation	18	19029635	G	C	33	97
BRCA	TCGA-EW-A1J5	RBBP8	SNP	Missense_Mutation	18	20573141	G	A	45	75
BRCA	TCGA-EW-A1J5	ZNF397	SNP	Missense_Mutation	18	32825765	G	A	45	92
BRCA	TCGA-EW-A1J5	FHOD3	SNP	Silent	18	34326920	C	G	29	97
BRCA	TCGA-EW-A1J5	KIAA1468	SNP	Silent	18	59895760	G	A	41	45
BRCA	TCGA-EW-A1J5	SERPINB11	SNP	Missense_Mutation	18	61387387	G	A	45	55
BRCA	TCGA-EW-A1J5	MBP	SNP	Missense_Mutation	18	74696844	C	T	31	76
BRCA	TCGA-EW-A1J5	PTPRM	SNP	Silent	18	8244068	G	A	33	69
BRCA	TCGA-EW-A1J5	ICAM1	SNP	Missense_Mutation	19	10394426	G	C	45	41
BRCA	TCGA-EW-A1J5	KEAP1	SNP	Nonsense_Mutation	19	10600510	C	A	29	68
BRCA	TCGA-EW-A1J5	DOCK6	SNP	Silent	19	11361688	C	G	29	63
BRCA	TCGA-EW-A1J5	ZNF20	SNP	Silent	19	12243957	G	A	45	54
BRCA	TCGA-EW-A1J5	ZNF20	SNP	Missense_Mutation	19	12244352	G	C	47	79
BRCA	TCGA-EW-A1J5	CIRBP	SNP	Missense_Mutation	19	1271007	C	G	32	51
BRCA	TCGA-EW-A1J5	MUM1	SNP	Missense_Mutation	19	1367172	C	T	32	87
BRCA	TCGA-EW-A1J5	GAMT	SNP	Missense_Mutation	19	1398963	C	A	22	90
BRCA	TCGA-EW-A1J5	MED26	SNP	Missense_Mutation	19	16687047	C	G	18	61
BRCA	TCGA-EW-A1J5	TIMM13	SNP	Missense_Mutation	19	2426965	C	A	23	65
BRCA	TCGA-EW-A1J5	ZNF565	SNP	Missense_Mutation	19	36685937	G	A	45	61
BRCA	TCGA-EW-A1J5	TJP3	SNP	Silent	19	3747917	C	T	17	63
BRCA	TCGA-EW-A1J5	FCGBP	SNP	Missense_Mutation	19	40367774	C	T	19	70
BRCA	TCGA-EW-A1J5	FCGBP	SNP	Silent	19	40433879	C	T	29	54
BRCA	TCGA-EW-A1J5	RELB	SNP	Missense_Mutation	19	45528975	C	T	30	91
BRCA	TCGA-EW-A1J5	AP2A1	SNP	Missense_Mutation	19	50303369	G	A	45	95
BRCA	TCGA-EW-A1J5	KLK14	SNP	Missense_Mutation	19	51581409	G	C	33	90
BRCA	TCGA-EW-A1J5	ZNF836	SNP	Silent	19	52660057	C	G	30	63
BRCA	TCGA-EW-A1J5	MBOAT7	SNP	Silent	19	54677852	G	A	41	46
BRCA	TCGA-EW-A1J5	NLRP2	SNP	Missense_Mutation	19	55502000	G	C	45	60
BRCA	TCGA-EW-A1J5	EPN1	SNP	Missense_Mutation	19	56189070	C	G	32	50
BRCA	TCGA-EW-A1J5	ZNF329	SNP	Silent	19	58639869	G	A	45	54
BRCA	TCGA-EW-A1J5	VAV1	SNP	Missense_Mutation	19	6826674	C	G	18	60
BRCA	TCGA-EW-A1J5	MUC16	SNP	Missense_Mutation	19	9057612	G	A	45	64
BRCA	TCGA-EW-A1J5	MUC16	SNP	Missense_Mutation	19	9087590	C	G	29	47
BRCA	TCGA-EW-A1J5	MAP4K4	SNP	Silent	2	102456320	G	A	45	79
BRCA	TCGA-EW-A1J5	MAP4K4	SNP	Silent	2	102456440	G	A	33	89
BRCA	TCGA-EW-A1J5	RANBP2	SNP	Missense_Mutation	2	109389434	G	A	45	94
BRCA	TCGA-EW-A1J5	NBAS	SNP	Nonsense_Mutation	2	15467970	G	A	45	74
BRCA	TCGA-EW-A1J5	TANC1	SNP	Missense_Mutation	2	160035418	G	C	45	100
BRCA	TCGA-EW-A1J5	BAZ2B	SNP	Missense_Mutation	2	160176856	C	T	29	74
BRCA	TCGA-EW-A1J5	SCN7A	SNP	Missense_Mutation	2	167273255	C	T	29	94
BRCA	TCGA-EW-A1J5	TTN	SNP	Missense_Mutation	2	179426201	C	T	29	89
BRCA	TCGA-EW-A1J5	TTN	SNP	Nonsense_Mutation	2	179427679	G	C	45	100
BRCA	TCGA-EW-A1J5	PMS1	SNP	Missense_Mutation	2	190660667	G	A	48	65
BRCA	TCGA-EW-A1J5	MFSD6	SNP	Silent	2	191354510	C	T	30	77
BRCA	TCGA-EW-A1J5	HECW2	SNP	Missense_Mutation	2	197183447	C	T	32	67
BRCA	TCGA-EW-A1J5	RFTN2	SNP	Nonsense_Mutation	2	198498526	C	A	29	82
BRCA	TCGA-EW-A1J5	APOB	SNP	Missense_Mutation	2	21231201	C	G	21	59
BRCA	TCGA-EW-A1J5	TUBA4A	SNP	Missense_Mutation	2	220115948	G	C	33	100
BRCA	TCGA-EW-A1J5	DNPEP	SNP	Missense_Mutation	2	220247855	C	G	32	98
BRCA	TCGA-EW-A1J5	SAG	SNP	Silent	2	234237145	C	T	30	82
BRCA	TCGA-EW-A1J5	THAP4	SNP	Silent	2	242572453	C	T	29	49
BRCA	TCGA-EW-A1J5	GPR113	SNP	Silent	2	26538505	C	T	29	76
BRCA	TCGA-EW-A1J5	SLC5A6	SNP	Silent	2	27430197	G	A	33	60
BRCA	TCGA-EW-A1J5	SNX17	SNP	Silent	2	27599541	C	T	30	55
BRCA	TCGA-EW-A1J5	OXER1	SNP	Missense_Mutation	2	42990854	C	G	29	53
BRCA	TCGA-EW-A1J5	CCDC88A	SNP	Missense_Mutation	2	55573390	C	G	32	96
BRCA	TCGA-EW-A1J5	USP34	SNP	Missense_Mutation	2	61622053	C	G	29	100
BRCA	TCGA-EW-A1J5	AFTPH	SNP	Missense_Mutation	2	64780084	G	C	33	62
BRCA	TCGA-EW-A1J5	ASPRV1	SNP	Missense_Mutation	2	70187836	C	T	32	76
BRCA	TCGA-EW-A1J5	ASPRV1	SNP	Missense_Mutation	2	70188183	G	A	33	66
BRCA	TCGA-EW-A1J5	TIA1	SNP	Missense_Mutation	2	70439953	C	G	30	84
BRCA	TCGA-EW-A1J5	POLR1A	SNP	Missense_Mutation	2	86272802	C	T	29	82
BRCA	TCGA-EW-A1J5	EIF2AK3	SNP	Silent	2	88857341	G	A	45	56
BRCA	TCGA-EW-A1J5	XKR7	SNP	Silent	20	30556266	C	T	31	51
BRCA	TCGA-EW-A1J5	DSN1	SNP	Nonsense_Mutation	20	35381196	G	A	45	54
BRCA	TCGA-EW-A1J5	ARFGEF2	SNP	Missense_Mutation	20	47621682	G	A	45	100
BRCA	TCGA-EW-A1J5	PTGIS	SNP	Silent	20	48164524	G	A	41	51
BRCA	TCGA-EW-A1J5	B4GALT5	SNP	Missense_Mutation	20	48256231	C	G	29	100
BRCA	TCGA-EW-A1J5	ADNP	SNP	Missense_Mutation	20	49510991	G	C	33	98
BRCA	TCGA-EW-A1J5	SALL4	SNP	Missense_Mutation	20	50407290	G	C	45	78
BRCA	TCGA-EW-A1J5	CTSZ	SNP	Missense_Mutation	20	57571764	G	A	33	78
BRCA	TCGA-EW-A1J5	SYCP2	SNP	Silent	20	58460989	G	A	45	55
BRCA	TCGA-EW-A1J5	SYCP2	SNP	Nonsense_Mutation	20	58470578	G	A	45	52
BRCA	TCGA-EW-A1J5	HAO1	SNP	Missense_Mutation	20	7866374	G	C	37	63
BRCA	TCGA-EW-A1J5	DONSON	SNP	Silent	21	34951791	G	C	45	58
BRCA	TCGA-EW-A1J5	ICOSLG	SNP	Missense_Mutation	21	45656866	G	A	41	76
BRCA	TCGA-EW-A1J5	TSPEAR	SNP	Missense_Mutation	21	45929232	C	T	22	60
BRCA	TCGA-EW-A1J5	KRTAP10-9	SNP	Missense_Mutation	21	46047160	G	C	33	67
BRCA	TCGA-EW-A1J5	COL6A2	SNP	Silent	21	47552403	G	A	33	61
BRCA	TCGA-EW-A1J5	TOP3B	SNP	Missense_Mutation	22	22319685	C	G	32	64
BRCA	TCGA-EW-A1J5	RTDR1	SNP	Silent	22	23401817	C	A	29	56
BRCA	TCGA-EW-A1J5	RASD2	SNP	Missense_Mutation	22	35943080	C	T	32	85
BRCA	TCGA-EW-A1J5	MYH9	SNP	Missense_Mutation	22	36708234	C	T	31	97
BRCA	TCGA-EW-A1J5	EIF3D	SNP	Missense_Mutation	22	36907562	C	G	32	98
BRCA	TCGA-EW-A1J5	DDX17	SNP	Missense_Mutation	22	38882173	G	C	45	64
BRCA	TCGA-EW-A1J5	TNRC6B	SNP	Missense_Mutation	22	40662525	C	G	32	85
BRCA	TCGA-EW-A1J5	LDOC1L	SNP	Silent	22	44892894	G	A	41	38
BRCA	TCGA-EW-A1J5	GLA	SNP	Missense_Mutation	23	100655659	G	C	45	50
BRCA	TCGA-EW-A1J5	GPRASP2	SNP	Missense_Mutation	23	101972129	C	G	29	54
BRCA	TCGA-EW-A1J5	MID1	SNP	Silent	23	10442697	C	T	32	72
BRCA	TCGA-EW-A1J5	AMOT	SNP	Missense_Mutation	23	112058819	G	C	45	80
BRCA	TCGA-EW-A1J5	PLS3	SNP	Silent	23	114868384	C	T	29	58
BRCA	TCGA-EW-A1J5	LAMP2	SNP	Missense_Mutation	23	119589289	G	A	33	59
BRCA	TCGA-EW-A1J5	MAGEC3	SNP	Missense_Mutation	23	140953296	C	T	29	53
BRCA	TCGA-EW-A1J5	SLITRK4	SNP	Missense_Mutation	23	142716423	C	G	29	64
BRCA	TCGA-EW-A1J5	ATP2B3	SNP	Missense_Mutation	23	152845591	G	C	33	73
BRCA	TCGA-EW-A1J5	LAGE3	SNP	Missense_Mutation	23	153706294	C	T	19	40
BRCA	TCGA-EW-A1J5	GAB3	SNP	Missense_Mutation	23	153924289	C	T	31	67
BRCA	TCGA-EW-A1J5	REPS2	SNP	Missense_Mutation	23	17047736	C	T	30	56
BRCA	TCGA-EW-A1J5	MAGEB1	SNP	Missense_Mutation	23	30269445	G	A	45	68
BRCA	TCGA-EW-A1J5	USP9X	SNP	Nonsense_Mutation	23	41056704	C	T	29	98
BRCA	TCGA-EW-A1J5	CXorf36	SNP	Missense_Mutation	23	45013388	C	T	32	74
BRCA	TCGA-EW-A1J5	ZNF630	SNP	Missense_Mutation	23	47918311	C	T	32	60
BRCA	TCGA-EW-A1J5	CACNA1F	SNP	Silent	23	49071937	C	T	32	51
BRCA	TCGA-EW-A1J5	NONO	SNP	Missense_Mutation	23	70517738	G	A	33	97
BRCA	TCGA-EW-A1J5	TAMM41	SNP	Silent	3	11831994	C	T	29	59
BRCA	TCGA-EW-A1J5	UROC1	SNP	Silent	3	126220075	G	A	40	50
BRCA	TCGA-EW-A1J5	PLXNA1	SNP	Missense_Mutation	3	126751260	C	G	29	61
BRCA	TCGA-EW-A1J5	TF	SNP	Missense_Mutation	3	133473506	C	G	32	51
BRCA	TCGA-EW-A1J5	SRPRB	SNP	Missense_Mutation	3	133530017	C	A	32	69
BRCA	TCGA-EW-A1J5	CEP63	SNP	Silent	3	134266255	G	A	45	70
BRCA	TCGA-EW-A1J5	LEKR1	SNP	Missense_Mutation	3	156660380	G	C	41	79
BRCA	TCGA-EW-A1J5	PIK3CA	SNP	Missense_Mutation	3	178936091	G	A	45	98
BRCA	TCGA-EW-A1J5	PIK3CA	SNP	Missense_Mutation	3	178938934	G	A	45	98
BRCA	TCGA-EW-A1J5	MAP3K13	SNP	Missense_Mutation	3	185198077	C	G	32	64
BRCA	TCGA-EW-A1J5	IL1RAP	SNP	Missense_Mutation	3	190366258	C	T	31	65
BRCA	TCGA-EW-A1J5	ATP13A5	SNP	Silent	3	193032846	G	A	45	47
BRCA	TCGA-EW-A1J5	EFHB	SNP	Missense_Mutation	3	19924193	C	T	31	84
BRCA	TCGA-EW-A1J5	STT3B	SNP	Missense_Mutation	3	31661244	G	A	45	100
BRCA	TCGA-EW-A1J5	CTDSPL	SNP	Missense_Mutation	3	37988634	G	C	41	97
BRCA	TCGA-EW-A1J5	ULK4	SNP	Missense_Mutation	3	41938469	G	C	45	60
BRCA	TCGA-EW-A1J5	SETD2	SNP	Missense_Mutation	3	47158173	C	G	32	100
BRCA	TCGA-EW-A1J5	MAP4	SNP	Silent	3	47957724	G	A	45	57
BRCA	TCGA-EW-A1J5	CELSR3	SNP	Silent	3	48694738	G	A	45	69
BRCA	TCGA-EW-A1J5	GRM2	SNP	Missense_Mutation	3	51747097	C	G	30	54
BRCA	TCGA-EW-A1J5	FRMD4B	SNP	Missense_Mutation	3	69230351	C	G	32	54
BRCA	TCGA-EW-A1J5	GXYLT2	SNP	Silent	3	73004303	C	T	32	72
BRCA	TCGA-EW-A1J5	ROBO2	SNP	Missense_Mutation	3	77617518	G	C	41	87
BRCA	TCGA-EW-A1J5	ROBO1	SNP	Missense_Mutation	3	79639053	C	G	30	80
BRCA	TCGA-EW-A1J5	COL25A1	SNP	Missense_Mutation	4	110222887	G	C	33	65
BRCA	TCGA-EW-A1J5	NDST3	SNP	Missense_Mutation	4	118975584	G	C	33	60
BRCA	TCGA-EW-A1J5	FAT4	SNP	Missense_Mutation	4	126369700	C	T	32	88
BRCA	TCGA-EW-A1J5	FAT1	SNP	Missense_Mutation	4	187628122	G	A	41	83
BRCA	TCGA-EW-A1J5	STIM2	SNP	Silent	4	27009196	G	T	45	49
BRCA	TCGA-EW-A1J5	PGM2	SNP	Missense_Mutation	4	37841763	G	C	33	89
BRCA	TCGA-EW-A1J5	GRXCR1	SNP	Silent	4	42895457	C	T	23	52
BRCA	TCGA-EW-A1J5	TXK	SNP	Missense_Mutation	4	48076019	G	C	45	64
BRCA	TCGA-EW-A1J5	CRMP1	SNP	Missense_Mutation	4	5830269	G	A	41	81
BRCA	TCGA-EW-A1J5	LPHN3	SNP	Silent	4	62897274	C	T	29	87
BRCA	TCGA-EW-A1J5	RUFY3	SNP	Missense_Mutation	4	71654529	G	A	45	100
BRCA	TCGA-EW-A1J5	LIN54	SNP	Missense_Mutation	4	83905683	C	G	32	77
BRCA	TCGA-EW-A1J5	HERC6	SNP	Nonsense_Mutation	4	89334350	G	A	47	50
BRCA	TCGA-EW-A1J5	WDR36	SNP	Missense_Mutation	5	110454814	C	G	32	53
BRCA	TCGA-EW-A1J5	CAMK4	SNP	Missense_Mutation	5	110712636	G	C	45	89
BRCA	TCGA-EW-A1J5	CAMK4	SNP	Nonsense_Mutation	5	110814119	C	T	29	99
BRCA	TCGA-EW-A1J5	EPB41L4A	SNP	Missense_Mutation	5	111531377	C	G	32	74
BRCA	TCGA-EW-A1J5	FNIP1	SNP	Missense_Mutation	5	130846097	C	T	32	100
BRCA	TCGA-EW-A1J5	DDX46	SNP	Missense_Mutation	5	134164380	G	A	33	98
BRCA	TCGA-EW-A1J5	FAM13B	SNP	Missense_Mutation	5	137289107	C	G	32	72
BRCA	TCGA-EW-A1J5	TMCO6	SNP	Silent	5	140022222	C	T	32	56
BRCA	TCGA-EW-A1J5	HARS	SNP	Missense_Mutation	5	140070834	C	T	31	77
BRCA	TCGA-EW-A1J5	PCDHGA2	SNP	Missense_Mutation	5	140718650	G	C	33	99
BRCA	TCGA-EW-A1J5	PCDHGB7	SNP	Missense_Mutation	5	140798462	G	A	33	70
BRCA	TCGA-EW-A1J5	FAM105A	SNP	Silent	5	14601228	G	A	45	53
BRCA	TCGA-EW-A1J5	EBF1	SNP	Missense_Mutation	5	158139314	G	A	45	98
BRCA	TCGA-EW-A1J5	ODZ2	SNP	Missense_Mutation	5	167671524	G	A	45	98
BRCA	TCGA-EW-A1J5	PANK3	SNP	Silent	5	167984582	G	A	45	69
BRCA	TCGA-EW-A1J5	MGAT4B	SNP	Nonsense_Mutation	5	179225428	G	A	45	75
BRCA	TCGA-EW-A1J5	BTNL9	SNP	Missense_Mutation	5	180477193	G	C	33	45
BRCA	TCGA-EW-A1J5	RAI14	SNP	Missense_Mutation	5	34813753	C	G	29	78
BRCA	TCGA-EW-A1J5	PIK3R1	SNP	Missense_Mutation	5	67590481	G	A	45	100
BRCA	TCGA-EW-A1J5	DMGDH	SNP	Nonsense_Mutation	5	78350099	G	A	45	100
BRCA	TCGA-EW-A1J5	XRCC4	SNP	Silent	5	82491606	C	T	29	53
BRCA	TCGA-EW-A1J5	AIM1	SNP	Missense_Mutation	6	106967799	G	C	33	67
BRCA	TCGA-EW-A1J5	WASF1	SNP	Missense_Mutation	6	110424677	C	G	32	96
BRCA	TCGA-EW-A1J5	WASF1	SNP	Missense_Mutation	6	110434547	C	T	29	98
BRCA	TCGA-EW-A1J5	CCDC90A	SNP	Silent	6	13801535	G	A	45	53
BRCA	TCGA-EW-A1J5	ZBTB2	SNP	Missense_Mutation	6	151694745	G	C	33	100
BRCA	TCGA-EW-A1J5	RBM24	SNP	Missense_Mutation	6	17292010	C	T	23	100
BRCA	TCGA-EW-A1J5	HIST1H2BB	SNP	Nonsense_Mutation	6	26043570	C	A	30	98
BRCA	TCGA-EW-A1J5	BTN3A2	SNP	Silent	6	26368441	C	T	32	52
BRCA	TCGA-EW-A1J5	GABBR1	SNP	Missense_Mutation	6	29589569	C	T	30	93
BRCA	TCGA-EW-A1J5	SLC44A4	SNP	Missense_Mutation	6	31833105	G	C	38	53
BRCA	TCGA-EW-A1J5	TEAD3	SNP	Silent	6	35446093	G	A	46	66
BRCA	TCGA-EW-A1J5	TEAD3	SNP	Silent	6	35446243	G	A	33	72
BRCA	TCGA-EW-A1J5	FGD2	SNP	Missense_Mutation	6	36995215	C	T	29	54
BRCA	TCGA-EW-A1J5	MEP1A	SNP	Silent	6	46766377	C	G	32	48
BRCA	TCGA-EW-A1J5	GPR116	SNP	Missense_Mutation	6	46828604	C	T	29	53
BRCA	TCGA-EW-A1J5	MUT	SNP	Missense_Mutation	6	49399509	G	A	41	92
BRCA	TCGA-EW-A1J5	LY86	SNP	Missense_Mutation	6	6654780	G	A	33	53
BRCA	TCGA-EW-A1J5	LMBRD1	SNP	Missense_Mutation	6	70462186	C	T	29	94
BRCA	TCGA-EW-A1J5	LRRN3	SNP	Missense_Mutation	7	110763804	C	G	29	100
BRCA	TCGA-EW-A1J5	MET	SNP	Missense_Mutation	7	116371761	G	A	45	85
BRCA	TCGA-EW-A1J5	CFTR	SNP	Missense_Mutation	7	117227866	G	C	37	75
BRCA	TCGA-EW-A1J5	CFTR	SNP	Silent	7	117251828	C	G	29	72
BRCA	TCGA-EW-A1J5	RNF133	SNP	Silent	7	122338358	G	A	45	66
BRCA	TCGA-EW-A1J5	LRRC4	SNP	Silent	7	127670274	G	A	38	50
BRCA	TCGA-EW-A1J5	CNTNAP2	SNP	Missense_Mutation	7	148080896	G	A	41	100
BRCA	TCGA-EW-A1J5	GIMAP7	SNP	Silent	7	150217320	C	T	32	46
BRCA	TCGA-EW-A1J5	MLL3	SNP	Missense_Mutation	7	152027786	C	G	32	73
BRCA	TCGA-EW-A1J5	DNAH11	SNP	Missense_Mutation	7	21784183	G	A	33	57
BRCA	TCGA-EW-A1J5	FTSJ2	SNP	Silent	7	2274964	G	T	45	58
BRCA	TCGA-EW-A1J5	KLHL7	SNP	Silent	7	23180527	C	A	29	55
BRCA	TCGA-EW-A1J5	POU6F2	SNP	Missense_Mutation	7	39446249	G	A	45	100
BRCA	TCGA-EW-A1J5	YAE1D1	SNP	Missense_Mutation	7	39612069	G	C	45	53
BRCA	TCGA-EW-A1J5	OGDH	SNP	Missense_Mutation	7	44734059	G	A	45	100
BRCA	TCGA-EW-A1J5	CLIP2	SNP	Missense_Mutation	7	73771716	G	A	37	96
BRCA	TCGA-EW-A1J5	MAGI2	SNP	Silent	7	79082424	C	T	32	74
BRCA	TCGA-EW-A1J5	PCLO	SNP	Missense_Mutation	7	82467571	C	T	29	100
BRCA	TCGA-EW-A1J5	SEMA3A	SNP	Missense_Mutation	7	83675694	G	A	33	76
BRCA	TCGA-EW-A1J5	ZNF804B	SNP	Missense_Mutation	7	88965217	G	A	33	52
BRCA	TCGA-EW-A1J5	SAMD9L	SNP	Missense_Mutation	7	92764738	G	C	33	56
BRCA	TCGA-EW-A1J5	CCDC132	SNP	Nonsense_Mutation	7	92979256	G	T	45	100
BRCA	TCGA-EW-A1J5	SPDYE3	SNP	Nonsense_Mutation	7	99905564	C	G	29	53
BRCA	TCGA-EW-A1J5	FBXO32	SNP	Missense_Mutation	8	124544170	G	C	33	58
BRCA	TCGA-EW-A1J5	GRINA	SNP	Silent	8	145066883	G	A	46	55
BRCA	TCGA-EW-A1J5	CPSF1	SNP	Splice_site	8	145621563	C	T	24	91
BRCA	TCGA-EW-A1J5	GPT	SNP	Missense_Mutation	8	145730399	C	G	30	76
BRCA	TCGA-EW-A1J5	ZNF34	SNP	Missense_Mutation	8	145999258	C	G	30	91
BRCA	TCGA-EW-A1J5	CLU	SNP	Nonsense_Mutation	8	27457503	G	A	47	78
BRCA	TCGA-EW-A1J5	UNC5D	SNP	Missense_Mutation	8	35606082	G	A	45	99
BRCA	TCGA-EW-A1J5	CHRNA6	SNP	Missense_Mutation	8	42620327	C	T	29	100
BRCA	TCGA-EW-A1J5	PRKDC	SNP	Silent	8	48811083	G	A	45	59
BRCA	TCGA-EW-A1J5	MOS	SNP	Missense_Mutation	8	57026109	C	G	19	47
BRCA	TCGA-EW-A1J5	PENK	SNP	Silent	8	57354326	G	A	45	74
BRCA	TCGA-EW-A1J5	CYP7B1	SNP	Nonsense_Mutation	8	65527649	G	A	45	74
BRCA	TCGA-EW-A1J5	PREX2	SNP	Missense_Mutation	8	69020348	C	G	32	100
BRCA	TCGA-EW-A1J5	ZFHX4	SNP	Missense_Mutation	8	77768387	C	T	19	75
BRCA	TCGA-EW-A1J5	ABCA1	SNP	Silent	9	107562237	G	A	45	60
BRCA	TCGA-EW-A1J5	ZNF462	SNP	Missense_Mutation	9	109689443	G	C	45	75
BRCA	TCGA-EW-A1J5	PAPPA	SNP	Silent	9	118950076	G	A	46	48
BRCA	TCGA-EW-A1J5	ASTN2	SNP	Missense_Mutation	9	119625984	C	G	29	100
BRCA	TCGA-EW-A1J5	TLR4	SNP	Missense_Mutation	9	120476354	C	A	32	48
BRCA	TCGA-EW-A1J5	CNTRL	SNP	Silent	9	123904482	C	G	30	52
BRCA	TCGA-EW-A1J5	CNTRL	SNP	Missense_Mutation	9	123914776	C	G	32	72
BRCA	TCGA-EW-A1J5	CNTRL	SNP	Missense_Mutation	9	123919814	G	A	45	71
BRCA	TCGA-EW-A1J5	DNM1	SNP	Missense_Mutation	9	130986618	G	C	41	100
BRCA	TCGA-EW-A1J5	SETX	SNP	Missense_Mutation	9	135205472	C	G	29	81
BRCA	TCGA-EW-A1J5	CNTNAP3B	SNP	Missense_Mutation	9	43876087	G	A	33	52
BRCA	TCGA-EW-A1J5	GDA	SNP	Missense_Mutation	9	74817626	G	A	37	72
BRCA	TCGA-EW-A1J5	NFIL3	SNP	Missense_Mutation	9	94172741	C	G	32	60
BRCA	TCGA-EW-A1J5	FAM120A	SNP	Missense_Mutation	9	96238576	C	T	29	100
BRCA	TCGA-EW-A1J5	FAM120A	SNP	Missense_Mutation	9	96261150	C	T	29	88
BRCA	TCGA-EW-A1J5	FAM22F	SNP	Missense_Mutation	9	97080967	C	G	32	48
BRCA	TCGA-EW-A1J6	FLG	SNP	Missense_Mutation	1	152284604	C	A	25	42
BRCA	TCGA-EW-A1J6	TNR	SNP	Silent	1	175372511	G	A	40	57
BRCA	TCGA-EW-A1J6	CUBN	SNP	Missense_Mutation	10	16942845	G	A	48	70
BRCA	TCGA-EW-A1J6	SLC16A9	SNP	Silent	10	61412689	G	A	43	51
BRCA	TCGA-EW-A1J6	ATM	SNP	Missense_Mutation	11	108218045	A	G	4	88
BRCA	TCGA-EW-A1J6	MUC5B	SNP	Silent	11	1265475	G	A	40	8
BRCA	TCGA-EW-A1J6	ADAMTS8	SNP	Silent	11	130286095	G	A	38	41
BRCA	TCGA-EW-A1J6	QSER1	INS	Frame_Shift_Ins	11	32955077	-	A	29	73
BRCA	TCGA-EW-A1J6	ODZ4	SNP	Silent	11	78440581	C	T	31	56
BRCA	TCGA-EW-A1J6	PLBD2	SNP	Missense_Mutation	12	113825554	A	G	4	91
BRCA	TCGA-EW-A1J6	UBAC2	SNP	Missense_Mutation	13	100020110	G	A	39	66
BRCA	TCGA-EW-A1J6	NALCN	SNP	Missense_Mutation	13	101936304	G	C	40	71
BRCA	TCGA-EW-A1J6	ITGBL1	SNP	Missense_Mutation	13	102344973	G	A	35	92
BRCA	TCGA-EW-A1J6	SSH2	SNP	Silent	17	28022486	G	A	48	82
BRCA	TCGA-EW-A1J6	KRT34	SNP	Missense_Mutation	17	39535625	G	T	34	93
BRCA	TCGA-EW-A1J6	CD79B	SNP	Silent	17	62007651	G	A	39	42
BRCA	TCGA-EW-A1J6	TTC39C	SNP	Splice_site	18	21698089	G	A	44	98
BRCA	TCGA-EW-A1J6	DCC	SNP	Missense_Mutation	18	50450083	G	C	41	89
BRCA	TCGA-EW-A1J6	COL5A3	SNP	Splice_site	19	10087234	C	T	23	48
BRCA	TCGA-EW-A1J6	ILF3	SNP	Missense_Mutation	19	10798193	C	G	30	65
BRCA	TCGA-EW-A1J6	SERPINE2	DEL	In_Frame_Del	2	224863029	TTG	-	56	67
BRCA	TCGA-EW-A1J6	HEATR5B	SNP	Splice_site	2	37234446	A	C	6	39
BRCA	TCGA-EW-A1J6	LRRTM1	SNP	Nonsense_Mutation	2	80530639	G	T	34	75
BRCA	TCGA-EW-A1J6	ENTPD6	SNP	Missense_Mutation	20	25205861	C	G	17	59
BRCA	TCGA-EW-A1J6	RNF215	DEL	Frame_Shift_Del	22	30775717	CA	-	25	91
BRCA	TCGA-EW-A1J6	TTC38	SNP	Missense_Mutation	22	46685729	G	A	40	53
BRCA	TCGA-EW-A1J6	SLC9C1	SNP	Missense_Mutation	3	111996653	G	T	46	48
BRCA	TCGA-EW-A1J6	COL6A5	SNP	Missense_Mutation	3	130202881	G	C	47	53
BRCA	TCGA-EW-A1J6	MAML3	SNP	Silent	4	140811075	C	T	28	45
BRCA	TCGA-EW-A1J6	DPYSL3	SNP	Silent	5	146777319	G	T	46	61
BRCA	TCGA-EW-A1J6	KIAA0947	SNP	Silent	5	5457497	G	T	38	42
BRCA	TCGA-EW-A1J6	SEMA5A	SNP	Silent	5	9108318	G	A	38	32
BRCA	TCGA-EW-A1J6	MYO6	SNP	Missense_Mutation	6	76540247	C	T	29	99
BRCA	TCGA-EW-A1J6	PLXNA4	SNP	Missense_Mutation	7	131848966	C	T	22	85
BRCA	TCGA-EW-A1J6	WBSCR28	SNP	Missense_Mutation	7	73279928	G	T	44	51
BRCA	TCGA-EW-A1J6	PPP1R9A	SNP	Missense_Mutation	7	94540068	C	A	30	74
BRCA	TCGA-EW-A1J6	FAM86B2	SNP	Silent	8	12283440	A	G	8	39
BRCA	TCGA-EW-A1J6	RB1CC1	SNP	Missense_Mutation	8	53569852	T	C	60	58
BRCA	TCGA-EW-A1J6	HSDL2	SNP	Nonsense_Mutation	9	115200812	A	T	1	67
BRCA	TCGA-EW-A1J6	SNX30	SNP	Silent	9	115567232	T	C	49	51
BRCA	TCGA-EW-A1J6	PIGO	SNP	Silent	9	35095509	G	A	40	48
BRCA	TCGA-EW-A1J6	ZBTB5	SNP	Missense_Mutation	9	37441075	G	C	46	69
BRCA	TCGA-EW-A1OV	FLG	SNP	Missense_Mutation	1	152280830	C	T	29	52
BRCA	TCGA-EW-A1OV	CCT3	SNP	Missense_Mutation	1	156280435	C	T	29	78
BRCA	TCGA-EW-A1OV	OR6Y1	SNP	Missense_Mutation	1	158517323	G	C	40	40
BRCA	TCGA-EW-A1OV	MST1P9	SNP	Silent	1	17083838	C	A	29	52
BRCA	TCGA-EW-A1OV	IL19	SNP	Nonsense_Mutation	1	206972245	C	A	25	29
BRCA	TCGA-EW-A1OV	INTS7	SNP	Silent	1	212141942	C	T	29	44
BRCA	TCGA-EW-A1OV	ZBTB40	SNP	Nonsense_Mutation	1	22828833	G	T	33	72
BRCA	TCGA-EW-A1OV	URB2	SNP	Missense_Mutation	1	229773010	A	C	16	57
BRCA	TCGA-EW-A1OV	FGR	SNP	Missense_Mutation	1	27939763	C	T	29	95
BRCA	TCGA-EW-A1OV	EPS15	SNP	Missense_Mutation	1	51874002	G	C	33	47
BRCA	TCGA-EW-A1OV	SGIP1	SNP	Missense_Mutation	1	67138977	G	A	33	84
BRCA	TCGA-EW-A1OV	TYW3	SNP	Missense_Mutation	1	75229688	C	T	21	51
BRCA	TCGA-EW-A1OV	INPP5A	SNP	Missense_Mutation	10	134523866	C	T	32	92
BRCA	TCGA-EW-A1OV	CUBN	SNP	Missense_Mutation	10	17142117	G	C	41	58
BRCA	TCGA-EW-A1OV	ARMC4	SNP	Missense_Mutation	10	28250550	C	A	25	77
BRCA	TCGA-EW-A1OV	SUPV3L1	SNP	Missense_Mutation	10	70960164	C	T	29	71
BRCA	TCGA-EW-A1OV	GUCY1A2	SNP	Missense_Mutation	11	106681104	C	T	31	96
BRCA	TCGA-EW-A1OV	ZNF259	SNP	Missense_Mutation	11	116657763	C	T	32	83
BRCA	TCGA-EW-A1OV	GPR137	SNP	Missense_Mutation	11	64054186	G	C	42	63
BRCA	TCGA-EW-A1OV	FAT3	SNP	Missense_Mutation	11	92592421	G	A	40	96
BRCA	TCGA-EW-A1OV	AMOTL1	SNP	Missense_Mutation	11	94603937	G	C	33	90
BRCA	TCGA-EW-A1OV	WSCD2	SNP	Missense_Mutation	12	108620851	G	A	45	95
BRCA	TCGA-EW-A1OV	NOS1	SNP	Missense_Mutation	12	117696209	C	G	32	94
BRCA	TCGA-EW-A1OV	FAR2	SNP	Silent	12	29474809	G	A	40	21
BRCA	TCGA-EW-A1OV	IPO8	SNP	Missense_Mutation	12	30816522	C	T	19	76
BRCA	TCGA-EW-A1OV	PDZRN4	SNP	Missense_Mutation	12	41966376	G	A	45	85
BRCA	TCGA-EW-A1OV	FAM186A	SNP	Missense_Mutation	12	50749200	G	C	33	51
BRCA	TCGA-EW-A1OV	OR6C6	SNP	Silent	12	55688858	G	C	45	47
BRCA	TCGA-EW-A1OV	HEATR4	SNP	Silent	14	73945314	G	C	33	49
BRCA	TCGA-EW-A1OV	EML5	SNP	Silent	14	89153606	G	T	45	72
BRCA	TCGA-EW-A1OV	IGDCC3	SNP	Nonsense_Mutation	15	65627716	G	A	37	70
BRCA	TCGA-EW-A1OV	AAGAB	SNP	Missense_Mutation	15	67496430	C	G	32	79
BRCA	TCGA-EW-A1OV	SMG1	SNP	Nonsense_Mutation	16	18865076	G	A	47	74
BRCA	TCGA-EW-A1OV	CEMP1	SNP	Silent	16	2580796	C	T	29	49
BRCA	TCGA-EW-A1OV	SRL	SNP	Nonsense_Mutation	16	4247812	G	A	45	86
BRCA	TCGA-EW-A1OV	ZNF500	SNP	Missense_Mutation	16	4812753	G	A	45	47
BRCA	TCGA-EW-A1OV	ELMO3	SNP	Splice_Site	16	67235311	G	A	33	78
BRCA	TCGA-EW-A1OV	TSNAXIP1	SNP	Nonsense_Mutation	16	67861265	C	G	29	50
BRCA	TCGA-EW-A1OV	NT5M	SNP	Silent	17	17248215	C	T	17	59
BRCA	TCGA-EW-A1OV	MED1	SNP	Missense_Mutation	17	37590562	A	G	1	87
BRCA	TCGA-EW-A1OV	XAF1	SNP	Missense_Mutation	17	6676441	C	T	23	38
BRCA	TCGA-EW-A1OV	COL5A3	SNP	Missense_Mutation	19	10106254	G	C	39	54
BRCA	TCGA-EW-A1OV	CPT1C	SNP	Missense_Mutation	19	50216736	C	G	30	55
BRCA	TCGA-EW-A1OV	ZNF534	SNP	Missense_Mutation	19	52942307	C	A	23	52
BRCA	TCGA-EW-A1OV	GPR108	SNP	Silent	19	6731093	G	A	33	73
BRCA	TCGA-EW-A1OV	RANBP2	SNP	Missense_Mutation	2	109380048	C	G	32	67
BRCA	TCGA-EW-A1OV	ZAK	SNP	Silent	2	174130809	G	A	41	47
BRCA	TCGA-EW-A1OV	TTN	SNP	Missense_Mutation	2	179495587	C	T	29	100
BRCA	TCGA-EW-A1OV	CXCR2	SNP	Silent	2	219000457	C	T	22	56
BRCA	TCGA-EW-A1OV	FAM59B	SNP	Nonsense_Mutation	2	26410420	C	G	29	73
BRCA	TCGA-EW-A1OV	ANKRD36C	SNP	Missense_Mutation	2	96542220	C	G	32	50
BRCA	TCGA-EW-A1OV	CECR2	SNP	Missense_Mutation	22	17983944	G	A	44	72
BRCA	TCGA-EW-A1OV	PIWIL3	SNP	Nonsense_Mutation	22	25147426	C	T	30	74
BRCA	TCGA-EW-A1OV	DNAJB7	SNP	Missense_Mutation	22	41257383	C	T	29	57
BRCA	TCGA-EW-A1OV	FANCB	SNP	Missense_Mutation	23	14861741	G	A	34	59
BRCA	TCGA-EW-A1OV	CXorf40A	SNP	Silent	23	148628334	C	G	23	26
BRCA	TCGA-EW-A1OV	MAGEA4	SNP	Silent	23	151092751	C	T	31	41
BRCA	TCGA-EW-A1OV	RAB39B	SNP	Missense_Mutation	23	154493495	G	A	39	69
BRCA	TCGA-EW-A1OV	OGT	SNP	Missense_Mutation	23	70776923	G	A	33	99
BRCA	TCGA-EW-A1OV	KIAA2022	SNP	Missense_Mutation	23	73962009	C	T	29	74
BRCA	TCGA-EW-A1OV	KIAA2022	SNP	Silent	23	73964065	C	T	29	61
BRCA	TCGA-EW-A1OV	MORC1	SNP	Missense_Mutation	3	108724021	C	G	32	56
BRCA	TCGA-EW-A1OV	C3orf52	SNP	Missense_Mutation	3	111835691	C	T	29	52
BRCA	TCGA-EW-A1OV	PDIA5	SNP	Missense_Mutation	3	122835135	G	A	37	65
BRCA	TCGA-EW-A1OV	TIPARP	SNP	Missense_Mutation	3	156395730	G	A	45	68
BRCA	TCGA-EW-A1OV	FNDC3B	SNP	Silent	3	172070865	C	A	21	52
BRCA	TCGA-EW-A1OV	PIK3CA	SNP	Missense_Mutation	3	178916854	G	A	33	97
BRCA	TCGA-EW-A1OV	EPHB3	SNP	Missense_Mutation	3	184298586	G	A	45	95
BRCA	TCGA-EW-A1OV	ARPP21	SNP	Nonsense_Mutation	3	35724361	C	T	29	79
BRCA	TCGA-EW-A1OV	CYB561D2	SNP	Missense_Mutation	3	50391063	C	T	32	70
BRCA	TCGA-EW-A1OV	CCDC111	SNP	Silent	4	185612860	C	T	29	59
BRCA	TCGA-EW-A1OV	PHOX2B	SNP	Silent	4	41748265	C	T	32	53
BRCA	TCGA-EW-A1OV	CENPC1	SNP	Nonsense_Mutation	4	68355813	G	A	45	52
BRCA	TCGA-EW-A1OV	CTNNA1	SNP	Nonsense_Mutation	5	138145810	C	T	31	64
BRCA	TCGA-EW-A1OV	PCDHB11	SNP	Silent	5	140579848	A	G	13	44
BRCA	TCGA-EW-A1OV	EPB41L2	SNP	Silent	6	131247796	G	C	33	52
BRCA	TCGA-EW-A1OV	REPS1	SNP	Missense_Mutation	6	139241412	C	T	29	93
BRCA	TCGA-EW-A1OV	FRMD1	SNP	Missense_Mutation	6	168462627	G	A	43	73
BRCA	TCGA-EW-A1OV	HIST1H2BC	SNP	Missense_Mutation	6	26124000	C	G	18	100
BRCA	TCGA-EW-A1OV	CD109	SNP	Missense_Mutation	6	74528116	C	T	31	49
BRCA	TCGA-EW-A1OV	MUC12	SNP	Nonsense_Mutation	7	100648336	C	G	29	61
BRCA	TCGA-EW-A1OV	CYP2W1	SNP	Missense_Mutation	7	1024666	C	T	23	52
BRCA	TCGA-EW-A1OV	SDK1	SNP	Missense_Mutation	7	4277291	C	T	26	75
BRCA	TCGA-EW-A1OV	SLC29A4	SNP	Silent	7	5338962	C	T	30	54
BRCA	TCGA-EW-A1OV	WBSCR28	SNP	Missense_Mutation	7	73280136	C	T	29	42
BRCA	TCGA-EW-A1OV	PKHD1L1	SNP	Splice_Site	8	110447418	G	C	33	79
BRCA	TCGA-EW-A1OV	SYBU	SNP	Missense_Mutation	8	110598367	G	A	37	90
BRCA	TCGA-EW-A1OV	TRAPPC9	SNP	Missense_Mutation	8	141415792	G	A	35	85
BRCA	TCGA-EW-A1OV	ZNF251	SNP	Silent	8	145947971	G	A	45	55
BRCA	TCGA-EW-A1OV	RC3H2	SNP	Missense_Mutation	9	125621108	C	T	31	93
BRCA	TCGA-EW-A1OV	VPS13A	SNP	Silent	9	79792653	G	A	45	79
BRCA	TCGA-EW-A1OV	PTPDC1	SNP	Missense_Mutation	9	96870160	A	T	1	64
BRCA	TCGA-EW-A1OX	NBPF10	SNP	Missense_Mutation	1	145311128	G	T	35	47
BRCA	TCGA-EW-A1OX	ARID4B	SNP	Missense_Mutation	1	235336038	G	C	33	84
BRCA	TCGA-EW-A1OX	ARID1A	INS	Frame_Shift_Ins	1	27107135	-	A	29	84
BRCA	TCGA-EW-A1OX	DLG5	SNP	Silent	10	79567580	G	A	42	51
BRCA	TCGA-EW-A1OX	GATA3	INS	Splice_site	10	8115985	-	C	15	65
BRCA	TCGA-EW-A1OX	MUC5B	SNP	Missense_Mutation	11	1266710	T	A	59	46
BRCA	TCGA-EW-A1OX	SENP1	SNP	Silent	12	48468348	T	A	59	53
BRCA	TCGA-EW-A1OX	LUM	SNP	Missense_Mutation	12	91502360	C	G	22	73
BRCA	TCGA-EW-A1OX	MYH1	SNP	Silent	17	10406521	T	A	61	50
BRCA	TCGA-EW-A1OX	KCNH6	SNP	Silent	17	61611456	T	C	49	67
BRCA	TCGA-EW-A1OX	TPM4	SNP	Missense_Mutation	19	16186899	A	C	10	64
BRCA	TCGA-EW-A1OX	PTPRH	SNP	Missense_Mutation	19	55699505	C	T	27	57
BRCA	TCGA-EW-A1OX	SCN1A	SNP	Missense_Mutation	2	166850700	C	G	30	100
BRCA	TCGA-EW-A1OX	KIAA1211L	SNP	Silent	2	99448832	C	T	21	42
BRCA	TCGA-EW-A1OX	SIM2	SNP	Nonsense_Mutation	21	38095375	C	T	31	67
BRCA	TCGA-EW-A1OX	PIH1D3	SNP	Silent	23	106456141	G	A	33	42
BRCA	TCGA-EW-A1OX	TIGIT	SNP	Silent	3	114012875	A	T	6	53
BRCA	TCGA-EW-A1OX	SNX18	INS	Frame_Shift_Ins	5	53815627	-	A	37	50
BRCA	TCGA-EW-A1OX	NXPH1	SNP	Missense_Mutation	7	8791227	C	T	29	100
BRCA	TCGA-EW-A1OX	ANKRD18B	SNP	Missense_Mutation	9	33536929	G	A	37	51
BRCA	TCGA-EW-A1OY	ATAD3A	SNP	Missense_Mutation	1	1460657	C	T	31	61
BRCA	TCGA-EW-A1OY	URB2	SNP	Missense_Mutation	1	229773865	G	A	38	55
BRCA	TCGA-EW-A1OY	OR2C3	SNP	Missense_Mutation	1	247695329	G	A	40	60
BRCA	TCGA-EW-A1OY	CDCA8	SNP	Missense_Mutation	1	38171237	G	A	33	63
BRCA	TCGA-EW-A1OY	ATG4C	SNP	Missense_Mutation	1	63282323	C	T	31	100
BRCA	TCGA-EW-A1OY	PCGF6	SNP	Missense_Mutation	10	105073972	G	C	39	66
BRCA	TCGA-EW-A1OY	DMBT1	SNP	Silent	10	124345880	C	T	19	50
BRCA	TCGA-EW-A1OY	PALD1	SNP	Silent	10	72292478	C	T	19	46
BRCA	TCGA-EW-A1OY	LARP4B	SNP	Missense_Mutation	10	871204	G	C	44	58
BRCA	TCGA-EW-A1OY	OR5AR1	SNP	Missense_Mutation	11	56431496	G	A	46	52
BRCA	TCGA-EW-A1OY	OR9G1	SNP	Missense_Mutation	11	56468576	C	T	30	64
BRCA	TCGA-EW-A1OY	SRRM4	SNP	Missense_Mutation	12	119419761	C	A	18	73
BRCA	TCGA-EW-A1OY	RIMBP2	SNP	Missense_Mutation	12	130927144	G	T	48	64
BRCA	TCGA-EW-A1OY	TFCP2	SNP	Missense_Mutation	12	51501053	T	A	49	77
BRCA	TCGA-EW-A1OY	TRPC4	SNP	Missense_Mutation	13	38248466	C	T	23	100
BRCA	TCGA-EW-A1OY	CYP46A1	SNP	Missense_Mutation	14	100173036	G	A	41	61
BRCA	TCGA-EW-A1OY	RYR3	SNP	Silent	15	33954438	C	T	27	46
BRCA	TCGA-EW-A1OY	FAM82A2	SNP	Silent	15	41028781	G	A	41	60
BRCA	TCGA-EW-A1OY	PEAK1	SNP	Missense_Mutation	15	77406832	C	T	23	59
BRCA	TCGA-EW-A1OY	EFTUD1	SNP	Missense_Mutation	15	82450087	T	C	59	93
BRCA	TCGA-EW-A1OY	BCKDK	SNP	Missense_Mutation	16	31121737	C	T	23	79
BRCA	TCGA-EW-A1OY	MYH1	SNP	Silent	17	10416983	G	A	37	53
BRCA	TCGA-EW-A1OY	RAB37	SNP	Splice_Site	17	72736906	G	T	35	96
BRCA	TCGA-EW-A1OY	TP53	SNP	Nonsense_Mutation	17	7578275	G	A	45	63
BRCA	TCGA-EW-A1OY	DNAH2	SNP	Missense_Mutation	17	7640395	G	A	40	47
BRCA	TCGA-EW-A1OY	DSG2	SNP	Missense_Mutation	18	29100768	A	G	14	51
BRCA	TCGA-EW-A1OY	FCGBP	SNP	Silent	19	40368619	G	A	38	40
BRCA	TCGA-EW-A1OY	HAS1	SNP	Missense_Mutation	19	52217080	G	A	38	88
BRCA	TCGA-EW-A1OY	CHRNA1	SNP	Silent	2	175618974	G	A	40	46
BRCA	TCGA-EW-A1OY	DNAH7	SNP	Nonsense_Mutation	2	196729475	C	A	32	99
BRCA	TCGA-EW-A1OY	PASK	SNP	Missense_Mutation	2	242063401	G	C	33	77
BRCA	TCGA-EW-A1OY	PYGB	SNP	Missense_Mutation	20	25252038	G	A	47	95
BRCA	TCGA-EW-A1OY	DLGAP4	SNP	Missense_Mutation	20	35060467	G	A	40	73
BRCA	TCGA-EW-A1OY	PI4KA	SNP	Splice_site	22	21096642	A	T	4	50
BRCA	TCGA-EW-A1OY	PI4KA	DNP	Missense_Mutation	22	21096935	CC	AA	26	75
BRCA	TCGA-EW-A1OY	BIK	DEL	In_Frame_Del	22	43525235	TGCTGCTGGCGCTGCTGC	-	59	48
BRCA	TCGA-EW-A1OY	WWC3	SNP	Silent	23	10066593	T	C	52	48
BRCA	TCGA-EW-A1OY	PRPS1	SNP	Silent	23	106893241	A	G	16	45
BRCA	TCGA-EW-A1OY	AVPR2	SNP	Missense_Mutation	23	153171405	C	T	23	65
BRCA	TCGA-EW-A1OY	SLC9A7	SNP	Silent	23	46508206	C	T	27	51
BRCA	TCGA-EW-A1OY	P2RY13	SNP	Missense_Mutation	3	151045982	C	T	29	51
BRCA	TCGA-EW-A1OY	SNRK	DEL	Frame_Shift_Del	3	43344860	AGCTA	-	15	50
BRCA	TCGA-EW-A1OY	ADH7	SNP	Missense_Mutation	4	100341943	G	A	35	67
BRCA	TCGA-EW-A1OY	ZNF732	SNP	Missense_Mutation	4	265013	G	C	35	49
BRCA	TCGA-EW-A1OY	ZNF732	SNP	Missense_Mutation	4	265525	G	A	41	39
BRCA	TCGA-EW-A1OY	KIAA0232	SNP	Missense_Mutation	4	6863905	G	C	44	75
BRCA	TCGA-EW-A1OY	HNRNPA0	SNP	Silent	5	137089510	C	T	23	56
BRCA	TCGA-EW-A1OY	PCDHGA7	SNP	Silent	5	140764593	C	T	31	34
BRCA	TCGA-EW-A1OY	PRDM9	SNP	Missense_Mutation	5	23527323	C	G	20	0
BRCA	TCGA-EW-A1OY	C6orf118	SNP	Missense_Mutation	6	165711541	G	A	38	51
BRCA	TCGA-EW-A1OY	MRPS18B	SNP	Silent	6	30587568	T	A	54	53
BRCA	TCGA-EW-A1OY	COL12A1	SNP	Missense_Mutation	6	75904624	T	A	62	91
BRCA	TCGA-EW-A1OY	ZNF292	SNP	Missense_Mutation	6	87970171	G	T	37	98
BRCA	TCGA-EW-A1OY	GIGYF1	SNP	Missense_Mutation	7	100284283	G	A	41	62
BRCA	TCGA-EW-A1OY	MLL3	SNP	Nonsense_Mutation	7	151891154	G	A	45	82
BRCA	TCGA-EW-A1OY	UPP1	SNP	Missense_Mutation	7	48147844	C	T	23	75
BRCA	TCGA-EW-A1OY	ZPBP	SNP	Missense_Mutation	7	50070741	C	T	27	47
BRCA	TCGA-EW-A1OY	WDR67	SNP	Nonsense_Mutation	8	124113134	G	T	45	67
BRCA	TCGA-EW-A1OY	C9orf62	SNP	Missense_Mutation	9	138235960	C	T	23	51
BRCA	TCGA-EW-A1OZ	DENND1B	SNP	Missense_Mutation	1	197515103	G	A	45	67
BRCA	TCGA-EW-A1OZ	COL16A1	SNP	Missense_Mutation	1	32120447	T	C	62	87
BRCA	TCGA-EW-A1OZ	ZCCHC11	SNP	Silent	1	52911474	G	A	45	54
BRCA	TCGA-EW-A1OZ	DHCR24	SNP	Missense_Mutation	1	55349418	T	G	56	69
BRCA	TCGA-EW-A1OZ	KIAA0913	SNP	Silent	10	75557625	C	T	27	88
BRCA	TCGA-EW-A1OZ	POLR3A	SNP	Silent	10	79784451	C	T	32	62
BRCA	TCGA-EW-A1OZ	PIK3AP1	SNP	Silent	10	98408467	G	A	37	44
BRCA	TCGA-EW-A1OZ	DSCAML1	SNP	Missense_Mutation	11	117302396	C	T	23	98
BRCA	TCGA-EW-A1OZ	MLL	DEL	Frame_Shift_Del	11	118359392	CCTCTGG	-	22	100
BRCA	TCGA-EW-A1OZ	MLL	DEL	In_Frame_Del	11	118359400	GGACCAGCTGGAAAATTG	-	35	66
BRCA	TCGA-EW-A1OZ	ALX4	SNP	Nonsense_Mutation	11	44289064	G	A	39	69
BRCA	TCGA-EW-A1OZ	DGKZ	SNP	Silent	11	46398099	G	A	41	61
BRCA	TCGA-EW-A1OZ	AGBL2	SNP	Missense_Mutation	11	47735870	C	T	17	60
BRCA	TCGA-EW-A1OZ	CACNA1C	SNP	Missense_Mutation	12	2675590	G	A	38	100
BRCA	TCGA-EW-A1OZ	GXYLT1	SNP	Missense_Mutation	12	42491739	A	C	4	55
BRCA	TCGA-EW-A1OZ	OTX2	SNP	Nonsense_Mutation	14	57268782	G	A	45	100
BRCA	TCGA-EW-A1OZ	ARID3B	SNP	Missense_Mutation	15	74836663	G	A	38	51
BRCA	TCGA-EW-A1OZ	ZNF434	SNP	Missense_Mutation	16	3434862	G	C	41	54
BRCA	TCGA-EW-A1OZ	MYO15A	SNP	Missense_Mutation	17	18046135	G	A	34	51
BRCA	TCGA-EW-A1OZ	FBXW10	SNP	Silent	17	18682066	T	C	52	48
BRCA	TCGA-EW-A1OZ	WSB1	SNP	Missense_Mutation	17	25637155	C	A	32	76
BRCA	TCGA-EW-A1OZ	TRPV3	SNP	Silent	17	3458079	G	A	44	63
BRCA	TCGA-EW-A1OZ	NLGN2	SNP	Missense_Mutation	17	7320448	C	T	19	74
BRCA	TCGA-EW-A1OZ	TP53	SNP	Nonsense_Mutation	17	7577509	C	A	30	80
BRCA	TCGA-EW-A1OZ	SLC26A11	SNP	Missense_Mutation	17	78210729	C	T	31	97
BRCA	TCGA-EW-A1OZ	CCDC151	SNP	Missense_Mutation	19	11537373	C	G	30	71
BRCA	TCGA-EW-A1OZ	FCGBP	SNP	Missense_Mutation	19	40366247	C	G	23	52
BRCA	TCGA-EW-A1OZ	C19orf10	SNP	Missense_Mutation	19	4659991	T	G	56	55
BRCA	TCGA-EW-A1OZ	NAPA	SNP	Missense_Mutation	19	48018149	C	A	26	76
BRCA	TCGA-EW-A1OZ	NOSIP	SNP	Missense_Mutation	19	50060466	T	G	56	54
BRCA	TCGA-EW-A1OZ	ZNF528	SNP	Silent	19	52909856	C	T	19	46
BRCA	TCGA-EW-A1OZ	ZNF611	SNP	Missense_Mutation	19	53209818	G	C	33	49
BRCA	TCGA-EW-A1OZ	FBN3	SNP	Missense_Mutation	19	8152732	C	T	23	76
BRCA	TCGA-EW-A1OZ	IL1R2	SNP	Missense_Mutation	2	102632478	C	T	23	53
BRCA	TCGA-EW-A1OZ	PRPF40A	SNP	Missense_Mutation	2	153515699	G	A	45	100
BRCA	TCGA-EW-A1OZ	TMBIM1	SNP	Missense_Mutation	2	219142384	T	C	51	44
BRCA	TCGA-EW-A1OZ	NGEF	SNP	Missense_Mutation	2	233759478	G	T	34	81
BRCA	TCGA-EW-A1OZ	TRAF3IP1	SNP	Missense_Mutation	2	239233967	C	A	29	52
BRCA	TCGA-EW-A1OZ	DTNB	SNP	Splice_site	2	25861883	G	A	39	68
BRCA	TCGA-EW-A1OZ	SLC12A5	SNP	Missense_Mutation	20	44673645	C	G	32	77
BRCA	TCGA-EW-A1OZ	NCOA3	DEL	In_Frame_Del	20	46279807	ATG	-	16	54
BRCA	TCGA-EW-A1OZ	CTSZ	SNP	Missense_Mutation	20	57570749	G	C	44	58
BRCA	TCGA-EW-A1OZ	PTK6	SNP	Silent	20	62163955	G	A	39	10
BRCA	TCGA-EW-A1OZ	PATZ1	SNP	Silent	22	31731814	C	T	25	56
BRCA	TCGA-EW-A1OZ	ATP11C	SNP	Missense_Mutation	23	138825729	C	T	17	93
BRCA	TCGA-EW-A1OZ	NDUFB5	SNP	Missense_Mutation	3	179322623	T	G	63	76
BRCA	TCGA-EW-A1OZ	BDH2	SNP	Silent	4	104013865	A	T	1	59
BRCA	TCGA-EW-A1OZ	ODZ3	SNP	Missense_Mutation	4	183721007	G	A	41	98
BRCA	TCGA-EW-A1OZ	C5orf52	SNP	Missense_Mutation	5	157106864	A	G	9	61
BRCA	TCGA-EW-A1OZ	CUL9	SNP	Missense_Mutation	6	43167709	A	G	12	47
BRCA	TCGA-EW-A1OZ	ZAN	SNP	Missense_Mutation	7	100350499	C	T	19	68
BRCA	TCGA-EW-A1OZ	GALNT11	SNP	Missense_Mutation	7	151810418	G	A	37	87
BRCA	TCGA-EW-A1OZ	PTPRN2	SNP	Missense_Mutation	7	158109540	C	T	27	52
BRCA	TCGA-EW-A1OZ	DERL1	SNP	Silent	8	124042882	T	C	49	51
BRCA	TCGA-EW-A1OZ	TRIM32	SNP	Missense_Mutation	9	119460255	C	G	17	63
BRCA	TCGA-EW-A1P0	CABP2	INS	Frame_Shift_Ins	11	67290059	-	G	7	18
BRCA	TCGA-EW-A1P0	FAT3	SNP	Missense_Mutation	11	92507304	G	C	45	82
BRCA	TCGA-EW-A1P0	GOLGA3	SNP	Missense_Mutation	12	133351864	G	C	47	77
BRCA	TCGA-EW-A1P0	PLCZ1	SNP	Missense_Mutation	12	18837138	A	G	2	54
BRCA	TCGA-EW-A1P0	PPFIBP1	SNP	Missense_Mutation	12	27832871	G	C	35	66
BRCA	TCGA-EW-A1P0	TNFRSF19	SNP	Missense_Mutation	13	24242970	C	A	30	54
BRCA	TCGA-EW-A1P0	MSL1	SNP	Silent	17	38282588	G	A	34	57
BRCA	TCGA-EW-A1P0	CBX1	SNP	Silent	17	46148872	T	A	49	62
BRCA	TCGA-EW-A1P0	DHPS	SNP	Silent	19	12788175	G	A	40	43
BRCA	TCGA-EW-A1P0	TTN	SNP	Missense_Mutation	2	179550299	C	A	17	64
BRCA	TCGA-EW-A1P0	ECEL1	INS	Frame_Shift_Ins	2	233350770	-	A	27	46
BRCA	TCGA-EW-A1P0	ALMS1	SNP	Missense_Mutation	2	73653617	C	A	20	54
BRCA	TCGA-EW-A1P0	DCTN1	SNP	Missense_Mutation	2	74595859	C	T	25	98
BRCA	TCGA-EW-A1P0	CELSR1	SNP	Missense_Mutation	22	46932208	A	G	7	74
BRCA	TCGA-EW-A1P0	HTR2C	SNP	Missense_Mutation	23	114141530	C	T	31	93
BRCA	TCGA-EW-A1P0	RAP2C	SNP	Missense_Mutation	23	131348321	T	C	51	88
BRCA	TCGA-EW-A1P0	COL6A5	SNP	Silent	3	130095411	G	A	36	55
BRCA	TCGA-EW-A1P0	PIK3CA	SNP	Missense_Mutation	3	178948044	A	G	12	88
BRCA	TCGA-EW-A1P0	MEPE	SNP	Missense_Mutation	4	88767390	C	T	22	49
BRCA	TCGA-EW-A1P0	PCDHB11	SNP	Silent	5	140580709	C	T	24	49
BRCA	TCGA-EW-A1P0	CEP57L1	SNP	Missense_Mutation	6	109483990	G	T	45	65
BRCA	TCGA-EW-A1P0	PKHD1L1	SNP	Missense_Mutation	8	110412471	T	A	59	69
BRCA	TCGA-EW-A1P1	DCHS2	SNP	Missense_Mutation	4	155411721	G	A	39	50
BRCA	TCGA-EW-A1P1	FAM47E	SNP	Missense_Mutation	4	77199305	C	G	19	44
BRCA	TCGA-EW-A1P3	NPHP4	SNP	Missense_Mutation	1	5967185	G	A	39	32
BRCA	TCGA-EW-A1P3	GATA3	DEL	Frame_Shift_Del	10	8115725	GAAG	-	33	86
BRCA	TCGA-EW-A1P3	SRPR	SNP	Missense_Mutation	11	126136761	G	A	41	54
BRCA	TCGA-EW-A1P3	FBLN5	SNP	Missense_Mutation	14	92343923	T	C	51	94
BRCA	TCGA-EW-A1P3	CYFIP1	SNP	Silent	15	22928474	T	A	55	46
BRCA	TCGA-EW-A1P3	CDYL2	SNP	Silent	16	80646646	C	A	25	68
BRCA	TCGA-EW-A1P3	CACNA1A	SNP	Missense_Mutation	19	13427968	T	C	49	64
BRCA	TCGA-EW-A1P3	CYP4F2	SNP	Missense_Mutation	19	16003198	C	T	23	80
BRCA	TCGA-EW-A1P3	VSTM2B	SNP	Missense_Mutation	19	30054758	G	A	39	65
BRCA	TCGA-EW-A1P3	CYTIP	SNP	Missense_Mutation	2	158272428	C	T	32	79
BRCA	TCGA-EW-A1P3	CASP8	SNP	Nonsense_Mutation	2	202131411	C	T	23	62
BRCA	TCGA-EW-A1P3	FBXL2	SNP	Missense_Mutation	3	33406169	T	G	54	88
BRCA	TCGA-EW-A1P3	TBC1D19	SNP	Missense_Mutation	4	26622298	G	A	45	80
BRCA	TCGA-EW-A1P3	PKD2L2	SNP	Splice_site	5	137226171	G	A	43	51
BRCA	TCGA-EW-A1P3	DNAH8	SNP	Nonsense_Mutation	6	38867558	C	T	19	70
BRCA	TCGA-EW-A1P3	DST	INS	Frame_Shift_Ins	6	56458463	-	A	61	77
BRCA	TCGA-EW-A1P4	TNN	SNP	Missense_Mutation	1	175097249	G	A	46	97
BRCA	TCGA-EW-A1P4	RFWD2	SNP	Silent	1	176012377	A	T	5	54
BRCA	TCGA-EW-A1P4	GALNT2	SNP	Splice_site	1	230398319	A	G	9	47
BRCA	TCGA-EW-A1P4	KIAA1804	SNP	Missense_Mutation	1	233518092	C	T	26	75
BRCA	TCGA-EW-A1P4	RYR2	SNP	Missense_Mutation	1	237753140	A	G	9	92
BRCA	TCGA-EW-A1P4	CLCA1	SNP	Missense_Mutation	1	86959277	G	T	46	88
BRCA	TCGA-EW-A1P4	GBF1	SNP	Missense_Mutation	10	104130498	G	C	33	97
BRCA	TCGA-EW-A1P4	INPP5A	SNP	Nonsense_Mutation	10	134463965	C	T	31	96
BRCA	TCGA-EW-A1P4	NMT2	SNP	Missense_Mutation	10	15161504	C	G	32	65
BRCA	TCGA-EW-A1P4	MPP7	SNP	Missense_Mutation	10	28378743	C	G	20	98
BRCA	TCGA-EW-A1P4	ANKRD30A	SNP	Missense_Mutation	10	37419187	G	A	37	58
BRCA	TCGA-EW-A1P4	CDH23	SNP	Missense_Mutation	10	73494028	G	A	40	97
BRCA	TCGA-EW-A1P4	POLR3A	SNP	Missense_Mutation	10	79778932	G	T	40	49
BRCA	TCGA-EW-A1P4	FAM22B	SNP	Silent	10	81471479	C	A	24	51
BRCA	TCGA-EW-A1P4	DYNC2H1	SNP	Splice_site	11	103114423	G	A	36	100
BRCA	TCGA-EW-A1P4	TRPM5	SNP	Missense_Mutation	11	2432879	C	T	19	67
BRCA	TCGA-EW-A1P4	NRXN2	DEL	Frame_Shift_Del	11	64393940	TCGAGCAGCCACTC	-	58	86
BRCA	TCGA-EW-A1P4	DENND5B	SNP	Missense_Mutation	12	31576559	C	G	32	74
BRCA	TCGA-EW-A1P4	STAT6	SNP	Missense_Mutation	12	57493104	C	A	30	78
BRCA	TCGA-EW-A1P4	TGM1	SNP	Missense_Mutation	14	24724436	C	G	20	83
BRCA	TCGA-EW-A1P4	RALGAPA1	SNP	Silent	14	36207803	G	A	40	59
BRCA	TCGA-EW-A1P4	DMXL2	SNP	Silent	15	51773279	T	C	60	50
BRCA	TCGA-EW-A1P4	VPS13C	SNP	Missense_Mutation	15	62211583	C	G	17	71
BRCA	TCGA-EW-A1P4	PDILT	SNP	Missense_Mutation	16	20373852	C	G	21	49
BRCA	TCGA-EW-A1P4	UBN1	SNP	Silent	16	4924574	T	G	53	54
BRCA	TCGA-EW-A1P4	CES5A	SNP	Missense_Mutation	16	55909072	G	A	42	53
BRCA	TCGA-EW-A1P4	CDH15	SNP	Missense_Mutation	16	89256775	A	C	10	86
BRCA	TCGA-EW-A1P4	TOP3A	DEL	Frame_Shift_Del	17	18208428	GCCTTACACACGTGGATAATCTCAAACCCGATGTTTTC	-	34	97
BRCA	TCGA-EW-A1P4	KRTAP4-9	SNP	Silent	17	39262243	C	A	26	48
BRCA	TCGA-EW-A1P4	KRT9	SNP	Splice_Site	17	39724412	A	G	14	64
BRCA	TCGA-EW-A1P4	AOC3	SNP	Silent	17	41004614	G	A	36	52
BRCA	TCGA-EW-A1P4	ABCA10	SNP	Missense_Mutation	17	67190077	T	C	52	64
BRCA	TCGA-EW-A1P4	TP53	SNP	Missense_Mutation	17	7578394	T	C	51	89
BRCA	TCGA-EW-A1P4	SIGLEC15	SNP	Nonsense_Mutation	18	43422081	C	T	21	74
BRCA	TCGA-EW-A1P4	SWSAP1	SNP	Missense_Mutation	19	11486428	G	C	33	56
BRCA	TCGA-EW-A1P4	JAK3	SNP	Missense_Mutation	19	17948829	C	T	26	90
BRCA	TCGA-EW-A1P4	LSM14A	SNP	Silent	19	34712628	G	A	39	54
BRCA	TCGA-EW-A1P4	ZNF260	SNP	Silent	19	37006039	T	C	64	55
BRCA	TCGA-EW-A1P4	SHANK1	SNP	Missense_Mutation	19	51217448	C	A	30	92
BRCA	TCGA-EW-A1P4	IL37	SNP	Missense_Mutation	2	113676172	A	G	9	56
BRCA	TCGA-EW-A1P4	DGKD	SNP	Missense_Mutation	2	234378033	A	T	3	86
BRCA	TCGA-EW-A1P4	UGT1A8	SNP	Missense_Mutation	2	234526969	A	G	11	52
BRCA	TCGA-EW-A1P4	TRPM8	SNP	Missense_Mutation	2	234871945	G	A	39	73
BRCA	TCGA-EW-A1P4	TCF7L1	SNP	Missense_Mutation	2	85529633	C	A	18	53
BRCA	TCGA-EW-A1P4	YWHAH	SNP	Silent	22	32352686	T	C	49	62
BRCA	TCGA-EW-A1P4	HCFC1	SNP	Missense_Mutation	23	153224852	G	A	42	70
BRCA	TCGA-EW-A1P4	PIK3R4	SNP	Missense_Mutation	3	130447357	T	C	52	90
BRCA	TCGA-EW-A1P4	MSL2	SNP	Silent	3	135870742	T	A	51	56
BRCA	TCGA-EW-A1P4	U2SURP	SNP	Missense_Mutation	3	142753807	A	G	9	89
BRCA	TCGA-EW-A1P4	CCR1	SNP	Silent	3	46245442	G	T	33	75
BRCA	TCGA-EW-A1P4	ZFYVE28	SNP	Silent	4	2341251	C	G	29	53
BRCA	TCGA-EW-A1P4	TXK	SNP	Silent	4	48115241	A	G	4	49
BRCA	TCGA-EW-A1P4	FYB	SNP	Missense_Mutation	5	39127855	T	A	50	66
BRCA	TCGA-EW-A1P4	LIX1	SNP	Missense_Mutation	5	96430625	G	C	40	72
BRCA	TCGA-EW-A1P4	SPATS1	SNP	Missense_Mutation	6	44328305	C	T	19	64
BRCA	TCGA-EW-A1P4	CCDC132	SNP	Missense_Mutation	7	92926136	A	G	12	88
BRCA	TCGA-EW-A1P4	CSMD3	SNP	Missense_Mutation	8	113933928	C	T	27	56
BRCA	TCGA-EW-A1P4	PLEC	SNP	Missense_Mutation	8	144991532	A	G	10	68
BRCA	TCGA-EW-A1P4	SEC16A	SNP	Missense_Mutation	9	139341757	G	A	42	52
BRCA	TCGA-EW-A1P4	CACNA1B	SNP	Splice_Site	9	140943768	G	C	40	98
BRCA	TCGA-EW-A1P4	FAM75A1	SNP	Missense_Mutation	9	39361134	G	T	42	43
BRCA	TCGA-EW-A1P5	CELSR2	SNP	Missense_Mutation	1	109814957	T	C	54	84
BRCA	TCGA-EW-A1P5	USH1C	SNP	Missense_Mutation	11	17518353	A	C	12	75
BRCA	TCGA-EW-A1P5	OR51E2	SNP	Missense_Mutation	11	4703421	G	A	37	61
BRCA	TCGA-EW-A1P5	CREBL2	SNP	Missense_Mutation	12	12788868	G	T	37	73
BRCA	TCGA-EW-A1P5	GALNT8	SNP	Missense_Mutation	12	4874615	G	A	38	50
BRCA	TCGA-EW-A1P5	LATS2	SNP	Missense_Mutation	13	21563350	G	C	43	56
BRCA	TCGA-EW-A1P5	UNC13C	SNP	Silent	15	54542602	C	T	19	43
BRCA	TCGA-EW-A1P5	NLRP12	SNP	Missense_Mutation	19	54314050	C	T	27	54
BRCA	TCGA-EW-A1P5	MYT1L	SNP	Silent	2	1926290	C	T	23	41
BRCA	TCGA-EW-A1P5	SF3B1	SNP	Missense_Mutation	2	198266834	T	C	62	93
BRCA	TCGA-EW-A1P5	GPR35	SNP	Silent	2	241570107	C	T	19	52
BRCA	TCGA-EW-A1P5	LBH	SNP	Splice_site	2	30457271	C	T	26	76
BRCA	TCGA-EW-A1P5	MAGEA12	SNP	Missense_Mutation	23	151900138	G	C	33	56
BRCA	TCGA-EW-A1P5	PIK3CA	DEL	In_Frame_Del	3	178928060	GCCAGTACCTCATGGATTAGAAGATTT	-	42	98
BRCA	TCGA-EW-A1P5	PIK3CA	INS	Frame_Shift_Ins	3	178928086	-	G	63	90
BRCA	TCGA-EW-A1P5	ARPP21	SNP	Silent	3	35833914	C	A	26	51
BRCA	TCGA-EW-A1P5	DNAH1	SNP	Missense_Mutation	3	52404645	C	A	19	42
BRCA	TCGA-EW-A1P5	GHRHR	SNP	Missense_Mutation	7	31013744	G	A	38	65
BRCA	TCGA-EW-A1P5	ADAM2	SNP	Silent	8	39695678	G	A	38	37
BRCA	TCGA-EW-A1P6	FRRS1	SNP	Missense_Mutation	1	100177672	C	T	32	85
BRCA	TCGA-EW-A1P6	IL10RA	SNP	Missense_Mutation	11	117860257	C	T	23	48
BRCA	TCGA-EW-A1P6	KIF26A	SNP	Missense_Mutation	14	104641403	C	T	19	71
BRCA	TCGA-EW-A1P6	WDR76	SNP	Missense_Mutation	15	44158472	G	T	44	42
BRCA	TCGA-EW-A1P6	PRPF8	SNP	Missense_Mutation	17	1576724	C	T	27	100
BRCA	TCGA-EW-A1P6	MBTD1	SNP	Missense_Mutation	17	49270817	A	G	4	72
BRCA	TCGA-EW-A1P6	PLEKHG2	SNP	Missense_Mutation	19	39905892	A	T	8	60
BRCA	TCGA-EW-A1P6	MEGF8	SNP	Missense_Mutation	19	42848602	G	A	38	61
BRCA	TCGA-EW-A1P6	ZDBF2	SNP	Missense_Mutation	2	207170549	G	A	41	54
BRCA	TCGA-EW-A1P6	CRIM1	SNP	Missense_Mutation	2	36740755	G	A	47	98
BRCA	TCGA-EW-A1P6	NLGN3	SNP	Missense_Mutation	23	70389880	A	C	16	74
BRCA	TCGA-EW-A1P6	DIAPH2	SNP	Missense_Mutation	23	96684718	G	A	40	89
BRCA	TCGA-EW-A1P6	TIPARP	SNP	Silent	3	156396272	T	A	55	38
BRCA	TCGA-EW-A1P6	ATP13A4	SNP	Silent	3	193174859	C	T	21	51
BRCA	TCGA-EW-A1P6	ITPR1	SNP	Missense_Mutation	3	4774809	A	G	16	90
BRCA	TCGA-EW-A1P6	GZMA	SNP	Missense_Mutation	5	54405976	A	G	2	49
BRCA	TCGA-EW-A1P6	MAP3K1	INS	Frame_Shift_Ins	5	56178143	-	A	29	70
BRCA	TCGA-EW-A1P6	FOXO3	DEL	Frame_Shift_Del	6	108984960	CTTCC	-	20	54
BRCA	TCGA-EW-A1P6	PRPF4B	SNP	Missense_Mutation	6	4056666	A	G	4	91
BRCA	TCGA-EW-A1P6	PNPLA8	SNP	Missense_Mutation	7	108155179	T	C	51	46
BRCA	TCGA-EW-A1P6	CYP11B2	SNP	Silent	8	143998609	G	A	46	48
BRCA	TCGA-EW-A1P7	NBPF15	SNP	Missense_Mutation	1	148579636	T	C	64	48
BRCA	TCGA-EW-A1P7	NTRK1	SNP	Splice_site	1	156834219	C	G	24	86
BRCA	TCGA-EW-A1P7	DNAH3	SNP	Silent	16	21170742	G	C	37	25
BRCA	TCGA-EW-A1P7	TTN	SNP	Missense_Mutation	2	179635029	T	A	56	94
BRCA	TCGA-EW-A1P7	TTC14	SNP	Missense_Mutation	3	180324055	T	C	60	79
BRCA	TCGA-EW-A1P7	TXK	SNP	Missense_Mutation	4	48091792	T	G	57	50
BRCA	TCGA-EW-A1P7	IL11RA	SNP	Splice_site	9	34655661	G	A	39	63
BRCA	TCGA-EW-A1P8	NOTCH2	SNP	Nonsense_Mutation	1	120458147	G	A	38	60
BRCA	TCGA-EW-A1P8	HRNR	SNP	Silent	1	152189263	A	G	8	48
BRCA	TCGA-EW-A1P8	KLHL12	SNP	Missense_Mutation	1	202862535	A	G	7	93
BRCA	TCGA-EW-A1P8	PCNXL2	SNP	Missense_Mutation	1	233394715	C	G	23	51
BRCA	TCGA-EW-A1P8	MTF1	SNP	Missense_Mutation	1	38323086	T	A	59	72
BRCA	TCGA-EW-A1P8	CASP7	SNP	Missense_Mutation	10	115486182	C	T	30	99
BRCA	TCGA-EW-A1P8	OR10G4	SNP	Silent	11	123886542	C	T	27	26
BRCA	TCGA-EW-A1P8	ACCSL	SNP	Missense_Mutation	11	44081434	G	C	45	43
BRCA	TCGA-EW-A1P8	LRRC32	SNP	Silent	11	76371884	C	G	22	50
BRCA	TCGA-EW-A1P8	ITPR2	SNP	Missense_Mutation	12	26640139	A	C	4	78
BRCA	TCGA-EW-A1P8	CD9	SNP	Missense_Mutation	12	6342590	C	A	24	94
BRCA	TCGA-EW-A1P8	COL4A2	INS	Frame_Shift_Ins	13	111121578	-	GAGGAAGCCTT	23	49
BRCA	TCGA-EW-A1P8	COG3	SNP	Silent	13	46070345	G	A	34	55
BRCA	TCGA-EW-A1P8	DHRS1	SNP	Silent	14	24760122	C	G	25	51
BRCA	TCGA-EW-A1P8	HECTD1	SNP	Silent	14	31582337	A	C	13	55
BRCA	TCGA-EW-A1P8	PDILT	SNP	Nonsense_Mutation	16	20387485	G	A	40	53
BRCA	TCGA-EW-A1P8	TMEM132E	SNP	Missense_Mutation	17	32961997	A	G	11	90
BRCA	TCGA-EW-A1P8	ATXN7L3	SNP	Missense_Mutation	17	42274624	G	A	37	70
BRCA	TCGA-EW-A1P8	SOGA2	SNP	Silent	18	8784556	G	C	39	46
BRCA	TCGA-EW-A1P8	SYDE1	SNP	Missense_Mutation	19	15223187	C	T	27	75
BRCA	TCGA-EW-A1P8	SYDE1	SNP	Missense_Mutation	19	15223341	A	G	6	67
BRCA	TCGA-EW-A1P8	SLC9A4	SNP	Missense_Mutation	2	103141572	G	C	43	49
BRCA	TCGA-EW-A1P8	ANAPC1	SNP	Missense_Mutation	2	112619981	G	A	40	74
BRCA	TCGA-EW-A1P8	TMEM150A	SNP	Silent	2	85827041	C	G	23	19
BRCA	TCGA-EW-A1P8	ANKRD36C	INS	Frame_Shift_Ins	2	96657310	-	TTCA	20	56
BRCA	TCGA-EW-A1P8	CHD6	SNP	Missense_Mutation	20	40049505	G	A	41	52
BRCA	TCGA-EW-A1P8	ZNFX1	SNP	Silent	20	47886966	G	A	37	54
BRCA	TCGA-EW-A1P8	BRWD1	DEL	Frame_Shift_Del	21	40600483	CA	-	29	96
BRCA	TCGA-EW-A1P8	TOM1	SNP	Missense_Mutation	22	35734720	C	T	26	66
BRCA	TCGA-EW-A1P8	ATG4A	SNP	Nonsense_Mutation	23	107396925	G	T	45	86
BRCA	TCGA-EW-A1P8	MAGEC2	SNP	Missense_Mutation	23	141291033	C	G	24	44
BRCA	TCGA-EW-A1P8	CELSR3	SNP	Nonsense_Mutation	3	48677877	G	C	40	48
BRCA	TCGA-EW-A1P8	APC	SNP	Missense_Mutation	5	112164629	G	A	36	98
BRCA	TCGA-EW-A1P8	SGCD	SNP	Missense_Mutation	5	156022038	G	T	41	90
BRCA	TCGA-EW-A1P8	HSP90AB1	SNP	Silent	6	44218045	G	A	33	54
BRCA	TCGA-EW-A1P8	UFL1	SNP	Splice_Site	6	96971168	G	A	44	95
BRCA	TCGA-EW-A1P8	LRCH4	SNP	Silent	7	100180051	G	C	39	21
BRCA	TCGA-EW-A1P8	ZNF12	SNP	Missense_Mutation	7	6731888	C	T	30	50
BRCA	TCGA-EW-A1P8	RNF19A	SNP	Silent	8	101271360	G	C	38	44
BRCA	TCGA-EW-A1PA	PDIK1L	SNP	Missense_Mutation	1	26448989	C	G	24	98
BRCA	TCGA-EW-A1PA	MUC5B	SNP	Silent	11	1267311	A	C	6	44
BRCA	TCGA-EW-A1PA	MRGPRX4	SNP	Missense_Mutation	11	18195501	G	T	42	57
BRCA	TCGA-EW-A1PA	SLC6A5	SNP	Silent	11	20676318	C	G	27	44
BRCA	TCGA-EW-A1PA	OR4S2	SNP	Silent	11	55419087	C	G	21	51
BRCA	TCGA-EW-A1PA	OR5AS1	SNP	Missense_Mutation	11	55798211	C	A	32	50
BRCA	TCGA-EW-A1PA	NADSYN1	SNP	Silent	11	71212359	C	T	31	34
BRCA	TCGA-EW-A1PA	TAS2R13	SNP	Missense_Mutation	12	11061465	G	C	33	34
BRCA	TCGA-EW-A1PA	ESYT1	SNP	Missense_Mutation	12	56532266	C	T	27	65
BRCA	TCGA-EW-A1PA	MYO1A	SNP	Missense_Mutation	12	57437051	C	A	24	50
BRCA	TCGA-EW-A1PA	MYCBP2	SNP	Missense_Mutation	13	77656125	G	C	34	71
BRCA	TCGA-EW-A1PA	EIF2B2	SNP	Nonsense_Mutation	14	75470300	A	T	5	93
BRCA	TCGA-EW-A1PA	RPUSD2	SNP	Missense_Mutation	15	40861751	C	T	23	46
BRCA	TCGA-EW-A1PA	DENND4A	SNP	Missense_Mutation	15	65994128	T	C	52	93
BRCA	TCGA-EW-A1PA	SEPT1	SNP	Missense_Mutation	16	30393112	C	T	21	84
BRCA	TCGA-EW-A1PA	NME4	INS	Frame_Shift_Ins	16	450140	-	AG	19	47
BRCA	TCGA-EW-A1PA	PRCD	SNP	Silent	17	74538648	C	T	32	53
BRCA	TCGA-EW-A1PA	TP53	SNP	Nonsense_Mutation	17	7578212	G	A	37	66
BRCA	TCGA-EW-A1PA	RPTOR	SNP	Missense_Mutation	17	78831617	G	T	40	96
BRCA	TCGA-EW-A1PA	DNMT1	SNP	Missense_Mutation	19	10259657	C	T	31	67
BRCA	TCGA-EW-A1PA	LILRA6	SNP	Missense_Mutation	19	54745659	G	C	45	26
BRCA	TCGA-EW-A1PA	SLC5A7	SNP	Missense_Mutation	2	108604643	T	G	50	93
BRCA	TCGA-EW-A1PA	TTN	SNP	Missense_Mutation	2	179478997	C	T	27	100
BRCA	TCGA-EW-A1PA	ZFP36L2	SNP	Missense_Mutation	2	43452474	C	T	31	92
BRCA	TCGA-EW-A1PA	CRNKL1	SNP	Missense_Mutation	20	20023016	T	A	51	72
BRCA	TCGA-EW-A1PA	PTPRT	SNP	Splice_site	20	41100907	G	A	40	47
BRCA	TCGA-EW-A1PA	CXorf57	SNP	Silent	23	105921404	C	T	31	50
BRCA	TCGA-EW-A1PA	MTM1	SNP	Missense_Mutation	23	149826404	G	C	47	52
BRCA	TCGA-EW-A1PA	CCNB3	SNP	Missense_Mutation	23	50051515	G	A	41	48
BRCA	TCGA-EW-A1PA	DCHS2	SNP	Missense_Mutation	4	155161799	C	T	29	47
BRCA	TCGA-EW-A1PA	PDS5A	SNP	Missense_Mutation	4	39865035	A	T	16	91
BRCA	TCGA-EW-A1PA	RBM47	SNP	Silent	4	40440362	G	C	33	41
BRCA	TCGA-EW-A1PA	PRDM9	SNP	Missense_Mutation	5	23527272	A	G	16	55
BRCA	TCGA-EW-A1PA	PLEKHG1	DEL	Frame_Shift_Del	6	151151728	AGGA	-	11	62
BRCA	TCGA-EW-A1PA	OSR2	SNP	Missense_Mutation	8	99961319	C	G	17	97
BRCA	TCGA-EW-A1PA	TSC1	SNP	Missense_Mutation	9	135772703	T	A	49	77
BRCA	TCGA-EW-A1PA	NOL8	SNP	Silent	9	95077794	T	C	62	50
BRCA	TCGA-EW-A1PB	KIAA1324	SNP	Missense_Mutation	1	109743374	C	G	30	100
BRCA	TCGA-EW-A1PB	KCND3	SNP	Missense_Mutation	1	112329593	C	G	32	76
BRCA	TCGA-EW-A1PB	SHE	SNP	Missense_Mutation	1	154473950	C	T	31	74
BRCA	TCGA-EW-A1PB	ARHGEF11	SNP	Silent	1	156915883	G	A	45	51
BRCA	TCGA-EW-A1PB	OR10J5	SNP	Silent	1	159505696	G	C	33	55
BRCA	TCGA-EW-A1PB	PIGM	SNP	Missense_Mutation	1	160000705	G	C	33	70
BRCA	TCGA-EW-A1PB	ZNF678	SNP	Missense_Mutation	1	227842649	G	C	41	69
BRCA	TCGA-EW-A1PB	ERMAP	SNP	Silent	1	43296767	C	A	23	54
BRCA	TCGA-EW-A1PB	NEXN	SNP	Missense_Mutation	1	78395103	G	C	33	72
BRCA	TCGA-EW-A1PB	CACNB2	DEL	Frame_Shift_Del	10	18807853	GCAAAAA	-	46	98
BRCA	TCGA-EW-A1PB	MLLT10	SNP	Missense_Mutation	10	21962594	C	G	32	89
BRCA	TCGA-EW-A1PB	FAM21C	SNP	Splice_site	10	46252586	A	G	3	50
BRCA	TCGA-EW-A1PB	PLAC9	SNP	Missense_Mutation	10	81901933	G	C	41	70
BRCA	TCGA-EW-A1PB	BIRC3	DEL	Frame_Shift_Del	11	102206908	CT	-	20	54
BRCA	TCGA-EW-A1PB	MUC5B	SNP	Missense_Mutation	11	1272209	C	T	21	55
BRCA	TCGA-EW-A1PB	LDHC	SNP	Missense_Mutation	11	18434280	G	C	41	64
BRCA	TCGA-EW-A1PB	C11orf40	INS	Frame_Shift_Ins	11	4592708	-	AG	17	47
BRCA	TCGA-EW-A1PB	SSRP1	SNP	Splice_Site	11	57099625	C	A	18	96
BRCA	TCGA-EW-A1PB	TMEM223	SNP	Silent	11	62558104	C	G	30	51
BRCA	TCGA-EW-A1PB	STIP1	SNP	Missense_Mutation	11	63970680	G	C	33	99
BRCA	TCGA-EW-A1PB	SNX15	SNP	Missense_Mutation	11	64803125	C	A	32	63
BRCA	TCGA-EW-A1PB	KDM2A	SNP	Missense_Mutation	11	66999259	G	A	41	71
BRCA	TCGA-EW-A1PB	TYR	SNP	Missense_Mutation	11	88961113	C	T	24	64
BRCA	TCGA-EW-A1PB	UTP20	SNP	Missense_Mutation	12	101699730	G	A	45	93
BRCA	TCGA-EW-A1PB	SPIC	SNP	Silent	12	101871392	G	C	45	54
BRCA	TCGA-EW-A1PB	NT5DC3	SNP	Missense_Mutation	12	104200107	C	G	17	97
BRCA	TCGA-EW-A1PB	TCP11L2	SNP	Nonsense_Mutation	12	106729428	C	T	29	57
BRCA	TCGA-EW-A1PB	DNAH10	SNP	Missense_Mutation	12	124281372	G	T	41	96
BRCA	TCGA-EW-A1PB	MANSC4	SNP	Missense_Mutation	12	27916222	C	T	32	54
BRCA	TCGA-EW-A1PB	HOXC6	DEL	Splice_site	12	54422706	GTGA	-	44	94
BRCA	TCGA-EW-A1PB	NALCN	SNP	Silent	13	101777015	G	A	45	70
BRCA	TCGA-EW-A1PB	TPP2	SNP	Missense_Mutation	13	103281891	G	A	36	98
BRCA	TCGA-EW-A1PB	RIN3	SNP	Silent	14	93118024	C	G	29	58
BRCA	TCGA-EW-A1PB	MEIS2	DEL	Frame_Shift_Del	15	37184576	TGGGGAGGAGTGTAACT	-	55	65
BRCA	TCGA-EW-A1PB	OIP5	SNP	Missense_Mutation	15	41624735	G	C	37	39
BRCA	TCGA-EW-A1PB	WDR72	SNP	Silent	15	53908000	G	A	42	57
BRCA	TCGA-EW-A1PB	ULK3	SNP	Missense_Mutation	15	75131064	G	A	34	93
BRCA	TCGA-EW-A1PB	HOMER2	SNP	Missense_Mutation	15	83523419	C	T	29	83
BRCA	TCGA-EW-A1PB	VPS33B	SNP	Missense_Mutation	15	91561082	C	G	32	86
BRCA	TCGA-EW-A1PB	SALL1	SNP	Missense_Mutation	16	51175790	C	G	32	77
BRCA	TCGA-EW-A1PB	KCTD19	SNP	Missense_Mutation	16	67325347	G	C	33	68
BRCA	TCGA-EW-A1PB	PRMT7	SNP	Missense_Mutation	16	68382280	C	G	17	47
BRCA	TCGA-EW-A1PB	CDRT1	SNP	Missense_Mutation	17	15522583	C	T	22	69
BRCA	TCGA-EW-A1PB	DNAI2	SNP	Silent	17	72308231	G	A	43	55
BRCA	TCGA-EW-A1PB	FAM100B	DEL	In_Frame_Del	17	74262032	CCA	-	26	50
BRCA	TCGA-EW-A1PB	TP53	SNP	Missense_Mutation	17	7578442	T	C	57	69
BRCA	TCGA-EW-A1PB	TNRC6C	SNP	Missense_Mutation	17	76047128	G	A	42	70
BRCA	TCGA-EW-A1PB	GLP2R	SNP	Silent	17	9764490	C	T	31	16
BRCA	TCGA-EW-A1PB	RBBP8	SNP	Missense_Mutation	18	20581659	G	C	41	51
BRCA	TCGA-EW-A1PB	ASXL3	SNP	Silent	18	31325407	C	T	29	57
BRCA	TCGA-EW-A1PB	LOXHD1	SNP	Missense_Mutation	18	44125353	C	G	32	72
BRCA	TCGA-EW-A1PB	ACAA2	SNP	Missense_Mutation	18	47311649	C	T	17	78
BRCA	TCGA-EW-A1PB	ANKRD12	SNP	Nonsense_Mutation	18	9257247	G	T	33	77
BRCA	TCGA-EW-A1PB	ILF3	SNP	Splice_site	19	10795141	G	C	33	71
BRCA	TCGA-EW-A1PB	CCDC130	SNP	Silent	19	13870017	C	T	17	67
BRCA	TCGA-EW-A1PB	EPHX3	SNP	Missense_Mutation	19	15342092	C	G	31	59
BRCA	TCGA-EW-A1PB	BRD4	SNP	Missense_Mutation	19	15350784	C	G	17	53
BRCA	TCGA-EW-A1PB	ZNF676	SNP	Missense_Mutation	19	22363099	C	G	32	68
BRCA	TCGA-EW-A1PB	GPATCH1	SNP	Nonsense_Mutation	19	33602732	C	A	31	96
BRCA	TCGA-EW-A1PB	IL28B	SNP	Silent	19	39734335	G	A	45	55
BRCA	TCGA-EW-A1PB	FCGBP	SNP	Missense_Mutation	19	40402300	G	A	46	60
BRCA	TCGA-EW-A1PB	CREB3L3	SNP	Missense_Mutation	19	4157065	C	T	30	83
BRCA	TCGA-EW-A1PB	CCDC94	SNP	Silent	19	4254420	C	T	30	52
BRCA	TCGA-EW-A1PB	CLPTM1	SNP	Silent	19	45494525	C	G	32	56
BRCA	TCGA-EW-A1PB	NAPA	SNP	Missense_Mutation	19	47996232	C	G	29	97
BRCA	TCGA-EW-A1PB	LIG1	SNP	Missense_Mutation	19	48653045	G	C	41	52
BRCA	TCGA-EW-A1PB	LILRA4	SNP	Silent	19	54848304	G	A	33	64
BRCA	TCGA-EW-A1PB	NLRP4	SNP	Missense_Mutation	19	56370171	A	T	12	52
BRCA	TCGA-EW-A1PB	ZNF587	SNP	Missense_Mutation	19	58370285	C	T	26	55
BRCA	TCGA-EW-A1PB	PEX11G	SNP	Missense_Mutation	19	7547069	G	T	41	77
BRCA	TCGA-EW-A1PB	GRHL1	SNP	Missense_Mutation	2	10126310	G	A	43	100
BRCA	TCGA-EW-A1PB	RGPD4	SNP	Missense_Mutation	2	108487221	G	C	45	68
BRCA	TCGA-EW-A1PB	POTEE	SNP	Missense_Mutation	2	132021709	C	T	18	76
BRCA	TCGA-EW-A1PB	NEB	SNP	Missense_Mutation	2	152435968	C	G	32	70
BRCA	TCGA-EW-A1PB	NBAS	SNP	Missense_Mutation	2	15374818	C	G	32	50
BRCA	TCGA-EW-A1PB	PLA2R1	SNP	Missense_Mutation	2	160825803	G	C	45	69
BRCA	TCGA-EW-A1PB	GALNT3	SNP	Nonsense_Mutation	2	166611525	G	A	45	86
BRCA	TCGA-EW-A1PB	SMC6	SNP	Missense_Mutation	2	17896164	G	A	33	65
BRCA	TCGA-EW-A1PB	BMPR2	SNP	Missense_Mutation	2	203420345	C	G	22	100
BRCA	TCGA-EW-A1PB	PLEKHM3	SNP	Nonsense_Mutation	2	208811101	G	C	45	69
BRCA	TCGA-EW-A1PB	DES	SNP	Silent	2	220283541	C	T	31	64
BRCA	TCGA-EW-A1PB	OTOF	SNP	Missense_Mutation	2	26688938	C	G	30	87
BRCA	TCGA-EW-A1PB	PPM1B	SNP	Nonsense_Mutation	2	44428733	C	G	29	100
BRCA	TCGA-EW-A1PB	MTIF2	SNP	Silent	2	55470655	C	T	32	63
BRCA	TCGA-EW-A1PB	SMEK2	SNP	Missense_Mutation	2	55806833	C	T	32	78
BRCA	TCGA-EW-A1PB	MYH7B	SNP	Missense_Mutation	20	33568430	C	A	21	97
BRCA	TCGA-EW-A1PB	DNTTIP1	SNP	Missense_Mutation	20	44429777	T	A	49	58
BRCA	TCGA-EW-A1PB	PREX1	SNP	Nonsense_Mutation	20	47309237	C	A	30	100
BRCA	TCGA-EW-A1PB	DIDO1	SNP	Missense_Mutation	20	61522371	A	C	7	79
BRCA	TCGA-EW-A1PB	CHRNA4	SNP	Missense_Mutation	20	61982113	G	C	44	55
BRCA	TCGA-EW-A1PB	PRPF6	SNP	Missense_Mutation	20	62616368	A	C	1	91
BRCA	TCGA-EW-A1PB	MYT1	SNP	Missense_Mutation	20	62868702	A	T	5	93
BRCA	TCGA-EW-A1PB	NF2	DEL	In_Frame_Del	22	30032827	ATCAAGGACACAGTGGCC	-	4	60
BRCA	TCGA-EW-A1PB	RNF128	SNP	Missense_Mutation	23	105937522	G	A	33	72
BRCA	TCGA-EW-A1PB	XPNPEP2	SNP	Missense_Mutation	23	128889307	A	C	8	82
BRCA	TCGA-EW-A1PB	BCORL1	SNP	Missense_Mutation	23	129149215	C	G	18	63
BRCA	TCGA-EW-A1PB	USP26	SNP	Silent	23	132160197	G	T	33	54
BRCA	TCGA-EW-A1PB	SLC35A2	SNP	Missense_Mutation	23	48762118	G	A	39	36
BRCA	TCGA-EW-A1PB	BBX	SNP	Missense_Mutation	3	107451818	G	C	41	98
BRCA	TCGA-EW-A1PB	KIAA2018	SNP	Missense_Mutation	3	113379916	C	G	29	78
BRCA	TCGA-EW-A1PB	SLC15A2	SNP	Missense_Mutation	3	121658238	C	G	30	53
BRCA	TCGA-EW-A1PB	MYLK	SNP	Nonsense_Mutation	3	123376021	C	A	29	86
BRCA	TCGA-EW-A1PB	XRN1	SNP	Silent	3	142095323	T	C	62	64
BRCA	TCGA-EW-A1PB	CNTN6	SNP	Silent	3	1444013	G	A	42	58
BRCA	TCGA-EW-A1PB	CYP8B1	SNP	Missense_Mutation	3	42917067	A	C	8	64
BRCA	TCGA-EW-A1PB	NBEAL2	SNP	Nonsense_Mutation	3	47045824	C	T	29	96
BRCA	TCGA-EW-A1PB	COL7A1	SNP	Missense_Mutation	3	48613091	C	A	30	73
BRCA	TCGA-EW-A1PB	ELF2	SNP	Missense_Mutation	4	139980675	G	A	46	95
BRCA	TCGA-EW-A1PB	GUCY1A3	SNP	Missense_Mutation	4	156634276	C	G	32	64
BRCA	TCGA-EW-A1PB	UGT2A1	SNP	Nonsense_Mutation	4	70504739	G	C	45	81
BRCA	TCGA-EW-A1PB	PCDHGB4	SNP	Missense_Mutation	5	140767563	C	A	30	77
BRCA	TCGA-EW-A1PB	G3BP1	SNP	Missense_Mutation	5	151179507	C	G	29	94
BRCA	TCGA-EW-A1PB	IQGAP2	SNP	Silent	5	75969810	G	A	33	99
BRCA	TCGA-EW-A1PB	CCNH	SNP	Missense_Mutation	5	86703897	C	G	29	82
BRCA	TCGA-EW-A1PB	CDC40	SNP	Missense_Mutation	6	110531945	G	C	33	83
BRCA	TCGA-EW-A1PB	UTRN	SNP	Missense_Mutation	6	144869832	C	A	29	79
BRCA	TCGA-EW-A1PB	PDE10A	SNP	Missense_Mutation	6	165827098	C	G	18	100
BRCA	TCGA-EW-A1PB	PDE10A	SNP	Silent	6	165832134	G	T	47	81
BRCA	TCGA-EW-A1PB	HIST1H2BK	SNP	Missense_Mutation	6	27114571	C	T	30	92
BRCA	TCGA-EW-A1PB	PRPF4B	SNP	Missense_Mutation	6	4037783	G	A	33	88
BRCA	TCGA-EW-A1PB	PRICKLE4	SNP	Missense_Mutation	6	41753249	C	G	28	49
BRCA	TCGA-EW-A1PB	TOMM6	SNP	Missense_Mutation	6	41757047	C	A	25	84
BRCA	TCGA-EW-A1PB	PPP2R5D	SNP	Missense_Mutation	6	42976473	C	G	32	69
BRCA	TCGA-EW-A1PB	HSP90AB1	SNP	Silent	6	44219554	G	A	33	62
BRCA	TCGA-EW-A1PB	MUT	SNP	Missense_Mutation	6	49426879	T	C	57	76
BRCA	TCGA-EW-A1PB	ICK	SNP	Silent	6	52876589	C	T	29	61
BRCA	TCGA-EW-A1PB	SMAP1	SNP	Missense_Mutation	6	71546704	G	C	41	84
BRCA	TCGA-EW-A1PB	ZNF292	SNP	Silent	6	87964520	G	A	45	56
BRCA	TCGA-EW-A1PB	SERPINE1	SNP	Silent	7	100773847	G	T	48	49
BRCA	TCGA-EW-A1PB	DOCK4	SNP	Splice_site	7	111395657	T	A	54	91
BRCA	TCGA-EW-A1PB	ZNF277	SNP	Missense_Mutation	7	111846820	C	T	23	17
BRCA	TCGA-EW-A1PB	CHRM2	SNP	Missense_Mutation	7	136699784	A	T	5	91
BRCA	TCGA-EW-A1PB	ADCK2	SNP	Missense_Mutation	7	140389402	G	C	33	45
BRCA	TCGA-EW-A1PB	FAM131B	SNP	Missense_Mutation	7	143055977	C	G	30	93
BRCA	TCGA-EW-A1PB	DNAH11	SNP	Missense_Mutation	7	21603876	C	T	19	55
BRCA	TCGA-EW-A1PB	PRKAR1B	SNP	Silent	7	720286	G	C	43	17
BRCA	TCGA-EW-A1PB	CACNA2D1	SNP	Missense_Mutation	7	81714138	G	A	45	100
BRCA	TCGA-EW-A1PB	ABCB4	SNP	Missense_Mutation	7	87069137	A	C	2	92
BRCA	TCGA-EW-A1PB	BMP1	SNP	Nonsense_Mutation	8	22052371	G	A	42	97
BRCA	TCGA-EW-A1PB	POLR3D	SNP	Silent	8	22107968	C	T	19	47
BRCA	TCGA-EW-A1PB	TMEM68	SNP	Silent	8	56668876	G	A	45	56
BRCA	TCGA-EW-A1PB	PTPN3	DEL	Frame_Shift_Del	9	112199160	TACCC	-	49	70
BRCA	TCGA-EW-A1PD	ITLN2	SNP	Silent	1	160921037	C	T	32	70
BRCA	TCGA-EW-A1PD	ZBTB8OS	SNP	Missense_Mutation	1	33099280	T	C	49	68
BRCA	TCGA-EW-A1PD	ZMPSTE24	SNP	Missense_Mutation	1	40734181	G	C	33	97
BRCA	TCGA-EW-A1PD	ZMYND12	SNP	Missense_Mutation	1	42905556	C	T	29	71
BRCA	TCGA-EW-A1PD	RNF220	SNP	Missense_Mutation	1	45110399	G	C	33	96
BRCA	TCGA-EW-A1PD	GSTO2	SNP	Missense_Mutation	10	106037866	T	A	52	90
BRCA	TCGA-EW-A1PD	TIAL1	SNP	Missense_Mutation	10	121347702	G	C	45	100
BRCA	TCGA-EW-A1PD	TTC40	SNP	Splice_Site	10	134754565	C	A	24	78
BRCA	TCGA-EW-A1PD	CUBN	SNP	Missense_Mutation	10	17110195	G	A	36	84
BRCA	TCGA-EW-A1PD	TSPAN32	SNP	Missense_Mutation	11	2337855	G	C	42	54
BRCA	TCGA-EW-A1PD	TRPM5	SNP	Missense_Mutation	11	2439002	C	T	22	58
BRCA	TCGA-EW-A1PD	FAM111A	SNP	Missense_Mutation	11	58920622	C	G	25	45
BRCA	TCGA-EW-A1PD	MS4A10	SNP	Missense_Mutation	11	60558546	C	A	30	73
BRCA	TCGA-EW-A1PD	PPP1R32	SNP	Missense_Mutation	11	61249870	G	C	36	37
BRCA	TCGA-EW-A1PD	PPP1R32	SNP	Splice_site	11	61253382	C	A	24	76
BRCA	TCGA-EW-A1PD	FADS1	DEL	Frame_Shift_Del	11	61578278	GGGTCTTTGC	-	47	96
BRCA	TCGA-EW-A1PD	PC	SNP	Missense_Mutation	11	66619395	C	T	25	93
BRCA	TCGA-EW-A1PD	UHRF1BP1L	SNP	Missense_Mutation	12	100496589	C	G	32	99
BRCA	TCGA-EW-A1PD	FBXW8	SNP	Missense_Mutation	12	117465283	C	G	18	63
BRCA	TCGA-EW-A1PD	SLC26A10	SNP	Missense_Mutation	12	58018918	C	T	26	45
BRCA	TCGA-EW-A1PD	C12orf56	SNP	Missense_Mutation	12	64746739	T	G	64	49
BRCA	TCGA-EW-A1PD	PLXNC1	SNP	Silent	12	94673274	C	T	30	63
BRCA	TCGA-EW-A1PD	ATP8A2	SNP	Splice_site	13	26129206	G	A	35	85
BRCA	TCGA-EW-A1PD	RB1	DEL	Frame_Shift_Del	13	49039423	ACATCTAT	-	2	90
BRCA	TCGA-EW-A1PD	SLITRK6	SNP	Missense_Mutation	13	86369992	T	A	63	91
BRCA	TCGA-EW-A1PD	CCDC88C	SNP	Missense_Mutation	14	91779648	C	T	30	75
BRCA	TCGA-EW-A1PD	PKM	SNP	Missense_Mutation	15	72499505	C	T	25	100
BRCA	TCGA-EW-A1PD	MGRN1	SNP	Silent	16	4715104	G	T	47	52
BRCA	TCGA-EW-A1PD	KSR1	SNP	Missense_Mutation	17	25937188	T	G	55	91
BRCA	TCGA-EW-A1PD	CDK12	SNP	Nonsense_Mutation	17	37627547	G	T	37	72
BRCA	TCGA-EW-A1PD	ERBB2	SNP	Missense_Mutation	17	37872089	T	G	49	59
BRCA	TCGA-EW-A1PD	CNTNAP1	SNP	Missense_Mutation	17	40835917	C	T	27	62
BRCA	TCGA-EW-A1PD	MKS1	SNP	Silent	17	56285904	T	G	59	47
BRCA	TCGA-EW-A1PD	ACE	INS	Frame_Shift_Ins	17	61566485	-	C	6	80
BRCA	TCGA-EW-A1PD	BPTF	SNP	Missense_Mutation	17	65925540	G	T	41	51
BRCA	TCGA-EW-A1PD	GCGR	SNP	Missense_Mutation	17	79769817	C	A	19	51
BRCA	TCGA-EW-A1PD	KRBA2	SNP	Missense_Mutation	17	8273116	G	A	41	66
BRCA	TCGA-EW-A1PD	METTL4	SNP	Missense_Mutation	18	2567097	G	C	36	55
BRCA	TCGA-EW-A1PD	TYMS	SNP	Missense_Mutation	18	670739	T	C	53	92
BRCA	TCGA-EW-A1PD	EMR3	SNP	Splice_Site	19	14743731	A	T	14	60
BRCA	TCGA-EW-A1PD	TSHZ3	SNP	Missense_Mutation	19	31769348	T	G	59	65
BRCA	TCGA-EW-A1PD	NFKBID	DEL	In_Frame_Del	19	36387325	GCCACGTGCAAGACC	-	42	77
BRCA	TCGA-EW-A1PD	ZNF582	SNP	Missense_Mutation	19	56896271	C	G	22	35
BRCA	TCGA-EW-A1PD	RANBP3	SNP	Silent	19	5918623	G	A	36	62
BRCA	TCGA-EW-A1PD	MBD5	SNP	Nonsense_Mutation	2	149247498	G	T	41	83
BRCA	TCGA-EW-A1PD	ARL6IP6	SNP	Missense_Mutation	2	153591569	G	C	41	93
BRCA	TCGA-EW-A1PD	ACVR1C	SNP	Missense_Mutation	2	158399221	T	G	56	79
BRCA	TCGA-EW-A1PD	CCDC173	SNP	Missense_Mutation	2	170537535	G	C	36	38
BRCA	TCGA-EW-A1PD	GULP1	SNP	Silent	2	189452661	A	G	4	59
BRCA	TCGA-EW-A1PD	SPHKAP	SNP	Silent	2	228855884	C	T	27	52
BRCA	TCGA-EW-A1PD	ATG16L1	SNP	Missense_Mutation	2	234201045	C	G	29	68
BRCA	TCGA-EW-A1PD	COL6A3	SNP	Missense_Mutation	2	238262027	C	A	26	89
BRCA	TCGA-EW-A1PD	LRRTM1	SNP	Silent	2	80530609	C	T	25	63
BRCA	TCGA-EW-A1PD	TRPM2	SNP	Missense_Mutation	21	45843548	T	G	55	59
BRCA	TCGA-EW-A1PD	ZC3H7B	SNP	Missense_Mutation	22	41752463	G	A	41	86
BRCA	TCGA-EW-A1PD	MAGEB18	SNP	Missense_Mutation	23	26157290	C	T	27	23
BRCA	TCGA-EW-A1PD	FAM9B	SNP	Missense_Mutation	23	9000176	G	T	36	44
BRCA	TCGA-EW-A1PD	SLC35A5	SNP	Missense_Mutation	3	112299994	A	G	6	77
BRCA	TCGA-EW-A1PD	WDR52	SNP	Missense_Mutation	3	113098230	C	T	29	50
BRCA	TCGA-EW-A1PD	WDR52	SNP	Nonsense_Mutation	3	113122794	G	A	37	71
BRCA	TCGA-EW-A1PD	ZBTB20	SNP	Silent	3	114069881	C	T	21	53
BRCA	TCGA-EW-A1PD	KLF15	SNP	Missense_Mutation	3	126070957	G	A	41	81
BRCA	TCGA-EW-A1PD	TMCC1	SNP	Missense_Mutation	3	129389639	C	G	24	98
BRCA	TCGA-EW-A1PD	EIF4G1	SNP	Missense_Mutation	3	184039523	C	A	21	55
BRCA	TCGA-EW-A1PD	CAMK2D	SNP	Missense_Mutation	4	114429417	T	A	56	78
BRCA	TCGA-EW-A1PD	GRXCR2	SNP	Silent	5	145252322	G	A	41	54
BRCA	TCGA-EW-A1PD	GRM1	SNP	Missense_Mutation	6	146480580	G	T	43	97
BRCA	TCGA-EW-A1PD	SLC22A3	SNP	Silent	6	160858218	C	T	26	51
BRCA	TCGA-EW-A1PD	COL9A1	SNP	Silent	6	70935663	G	A	40	52
BRCA	TCGA-EW-A1PD	PTPRZ1	SNP	Missense_Mutation	7	121698936	T	A	56	93
BRCA	TCGA-EW-A1PD	ZMIZ2	DEL	Splice_Site	7	44805751	CTCCTCTCACA	-	32	47
BRCA	TCGA-EW-A1PD	RB1CC1	SNP	Missense_Mutation	8	53570383	C	A	32	66
BRCA	TCGA-EW-A1PD	CNGB3	SNP	Missense_Mutation	8	87588343	C	T	29	58
BRCA	TCGA-EW-A1PE	DENND4B	INS	Frame_Shift_Ins	1	153907305	-	C	48	57
BRCA	TCGA-EW-A1PE	STX6	SNP	Missense_Mutation	1	180971828	C	T	29	93
BRCA	TCGA-EW-A1PE	PHB2	SNP	Missense_Mutation	12	7074852	T	G	64	71
BRCA	TCGA-EW-A1PE	BRCA2	SNP	Missense_Mutation	13	32911964	G	C	41	53
BRCA	TCGA-EW-A1PE	BRCA2	SNP	Missense_Mutation	13	32912065	G	C	36	44
BRCA	TCGA-EW-A1PE	INTS6	SNP	Missense_Mutation	13	52026554	C	T	29	66
BRCA	TCGA-EW-A1PE	GOLGA6L2	SNP	Missense_Mutation	15	23689114	C	T	26	NaN
BRCA	TCGA-EW-A1PE	DNAH9	SNP	Silent	17	11772531	C	T	23	39
BRCA	TCGA-EW-A1PE	MAP2K4	DEL	Frame_Shift_Del	17	12016647	AA	-	5	48
BRCA	TCGA-EW-A1PE	SGSM2	SNP	Missense_Mutation	17	2265513	T	C	54	88
BRCA	TCGA-EW-A1PE	TAOK1	SNP	Missense_Mutation	17	27804712	G	T	41	85
BRCA	TCGA-EW-A1PE	RASIP1	SNP	Nonsense_Mutation	19	49227977	G	A	40	63
BRCA	TCGA-EW-A1PE	ARHGEF4	SNP	Missense_Mutation	2	131785560	A	T	9	82
BRCA	TCGA-EW-A1PE	SNED1	SNP	Silent	2	241989250	C	T	27	48
BRCA	TCGA-EW-A1PE	CDH26	SNP	Silent	20	58559737	A	G	1	54
BRCA	TCGA-EW-A1PE	TNRC6B	SNP	Missense_Mutation	22	40661715	A	G	2	57
BRCA	TCGA-EW-A1PE	ATP6AP1	INS	In_Frame_Ins	23	153657133	-	GGCGGC	63	40
BRCA	TCGA-EW-A1PE	PIK3CA	SNP	Missense_Mutation	3	178936094	C	A	25	98
BRCA	TCGA-EW-A1PE	PIK3CA	SNP	Missense_Mutation	3	178952018	A	G	10	91
BRCA	TCGA-EW-A1PE	MUC4	SNP	Missense_Mutation	3	195510372	G	C	48	50
BRCA	TCGA-EW-A1PE	OR5H1	SNP	Silent	3	97851916	C	T	21	50
BRCA	TCGA-EW-A1PE	FBXW7	SNP	Missense_Mutation	4	153251936	C	T	32	100
BRCA	TCGA-EW-A1PE	ADAM29	SNP	Missense_Mutation	4	175896768	C	T	23	52
BRCA	TCGA-EW-A1PE	CEP120	DEL	In_Frame_Del	5	122682280	TCC	-	50	82
BRCA	TCGA-EW-A1PE	GABRG2	SNP	Missense_Mutation	5	161576176	G	T	44	88
BRCA	TCGA-EW-A1PE	PTGER4	SNP	Silent	5	40692393	C	T	27	45
BRCA	TCGA-EW-A1PE	THBS4	SNP	Missense_Mutation	5	79355631	G	A	37	70
BRCA	TCGA-EW-A1PE	RASGRF2	SNP	Missense_Mutation	5	80338748	G	A	38	93
BRCA	TCGA-EW-A1PE	CITED2	SNP	Missense_Mutation	6	139694508	T	C	55	49
BRCA	TCGA-EW-A1PE	C9orf174	SNP	Missense_Mutation	9	100087310	G	A	37	77
BRCA	TCGA-EW-A1PE	CRAT	SNP	Missense_Mutation	9	131859542	C	T	26	54
BRCA	TCGA-EW-A1PE	CREB3	SNP	Silent	9	35733103	C	G	24	72
BRCA	TCGA-EW-A1PE	PRKACG	SNP	Silent	9	71628862	C	A	27	42
BRCA	TCGA-EW-A1PG	CADM3	SNP	Missense_Mutation	1	159163753	C	T	27	56
BRCA	TCGA-EW-A1PG	GBP1	SNP	Silent	1	89519074	C	T	31	47
BRCA	TCGA-EW-A1PG	NEUROD1	SNP	Missense_Mutation	2	182542799	A	T	4	44
BRCA	TCGA-EW-A1PG	KLF7	SNP	Nonsense_Mutation	2	207988824	A	T	13	93
BRCA	TCGA-EW-A1PG	NAA20	SNP	Silent	20	20003112	A	G	6	43
BRCA	TCGA-EW-A1PG	CDH26	SNP	Nonsense_Mutation	20	58559787	T	A	61	48
BRCA	TCGA-EW-A1PG	IL10RB	SNP	Missense_Mutation	21	34668541	C	T	31	60
BRCA	TCGA-EW-A1PG	FRAS1	SNP	Silent	4	79462038	G	A	33	51
BRCA	TCGA-EW-A1PH	AMPD1	SNP	Missense_Mutation	1	115217393	G	C	45	89
BRCA	TCGA-EW-A1PH	VPS13D	SNP	Silent	1	12368636	A	T	7	50
BRCA	TCGA-EW-A1PH	GJA8	SNP	Silent	1	147380700	C	T	30	63
BRCA	TCGA-EW-A1PH	PRUNE	SNP	Missense_Mutation	1	150998051	A	G	10	84
BRCA	TCGA-EW-A1PH	LAMC1	DEL	In_Frame_Del	1	183093958	AAG	-	1	63
BRCA	TCGA-EW-A1PH	TROVE2	INS	Splice_site	1	193054120	-	A	17	46
BRCA	TCGA-EW-A1PH	PROX1	SNP	Missense_Mutation	1	214184963	G	A	37	100
BRCA	TCGA-EW-A1PH	RYR2	SNP	Missense_Mutation	1	237806646	G	A	41	88
BRCA	TCGA-EW-A1PH	HOOK1	SNP	Missense_Mutation	1	60306040	A	G	3	54
BRCA	TCGA-EW-A1PH	PCDH15	SNP	Missense_Mutation	10	55582871	T	A	64	50
BRCA	TCGA-EW-A1PH	ARFIP2	SNP	Nonstop_Mutation	11	6499366	T	C	53	47
BRCA	TCGA-EW-A1PH	KRT7	SNP	Missense_Mutation	12	52636898	G	C	45	95
BRCA	TCGA-EW-A1PH	LGR5	SNP	Silent	12	71833917	G	A	37	58
BRCA	TCGA-EW-A1PH	AP1G2	SNP	Missense_Mutation	14	24032994	G	T	42	60
BRCA	TCGA-EW-A1PH	CEP128	SNP	Missense_Mutation	14	81329196	G	A	38	53
BRCA	TCGA-EW-A1PH	LPCAT4	SNP	Nonsense_Mutation	15	34655637	C	T	30	72
BRCA	TCGA-EW-A1PH	MYLPF	SNP	Missense_Mutation	16	30389183	T	C	53	86
BRCA	TCGA-EW-A1PH	DNAH9	SNP	Missense_Mutation	17	11597227	C	G	28	65
BRCA	TCGA-EW-A1PH	TP53	DEL	Frame_Shift_Del	17	7577061	CTTT	-	24	59
BRCA	TCGA-EW-A1PH	TIMM22	SNP	Silent	17	900427	A	G	7	49
BRCA	TCGA-EW-A1PH	CEACAM4	SNP	Missense_Mutation	19	42126986	C	T	19	41
BRCA	TCGA-EW-A1PH	RPL18	SNP	Splice_site	19	49119337	G	A	39	47
BRCA	TCGA-EW-A1PH	DKKL1	SNP	Nonsense_Mutation	19	49878066	G	A	41	71
BRCA	TCGA-EW-A1PH	USP29	SNP	Nonsense_Mutation	19	57641241	G	T	33	45
BRCA	TCGA-EW-A1PH	LCT	SNP	Silent	2	136566347	A	G	7	42
BRCA	TCGA-EW-A1PH	SCN7A	SNP	Missense_Mutation	2	167284443	C	T	27	46
BRCA	TCGA-EW-A1PH	LRP2	SNP	Missense_Mutation	2	170134405	G	T	46	88
BRCA	TCGA-EW-A1PH	KIAA1715	SNP	Splice_site	2	176802242	G	C	34	97
BRCA	TCGA-EW-A1PH	RDH14	SNP	Missense_Mutation	2	18736520	C	G	21	73
BRCA	TCGA-EW-A1PH	MMP11	SNP	Missense_Mutation	22	24124523	G	A	37	72
BRCA	TCGA-EW-A1PH	BCOR	SNP	Silent	23	39931968	G	A	39	62
BRCA	TCGA-EW-A1PH	SYNPO2	SNP	Silent	4	119952720	G	A	38	43
BRCA	TCGA-EW-A1PH	RFC1	SNP	Missense_Mutation	4	39301747	T	C	64	94
BRCA	TCGA-EW-A1PH	CD14	SNP	Missense_Mutation	5	140012442	G	T	42	67
BRCA	TCGA-EW-A1PH	PDZD2	SNP	Missense_Mutation	5	32090922	G	C	45	53
BRCA	TCGA-EW-A1PH	ZBTB9	SNP	Missense_Mutation	6	33424124	G	A	46	95
BRCA	TCGA-EW-A1PH	ABCB5	SNP	Missense_Mutation	7	20687685	C	T	29	82
BRCA	TCGA-EW-A1PH	SYBU	SNP	Missense_Mutation	8	110655166	A	G	1	59
BRCA	TCGA-EW-A1PH	ZNF251	SNP	Missense_Mutation	8	145947814	C	T	23	75
BRCA	TCGA-EW-A1PH	PXDNL	SNP	Missense_Mutation	8	52321996	G	T	47	68
BRCA	TCGA-EW-A1PH	KIAA1429	SNP	Missense_Mutation	8	95500959	C	T	19	93
BRCA	TCGA-EW-A1PH	COL5A1	SNP	Splice_site	9	137623972	C	T	23	95
BRCA	TCGA-EW-A1PH	NOTCH1	INS	Frame_Shift_Ins	9	139390869	-	CCTGGCTC	46	68
BRCA	TCGA-EW-A1PH	NOTCH1	INS	In_Frame_Ins	9	139390877	-	CCT	31	45
BRCA	TCGA-EW-A1PH	LINGO2	SNP	Silent	9	27949218	G	A	37	39
BRCA	TCGA-EW-A1PH	KIAA0020	SNP	Missense_Mutation	9	2812275	G	C	48	84
BRCA	TCGA-GI-A2C8	SRM	SNP	Missense_Mutation	1	11119330	C	G	24	70
BRCA	TCGA-GI-A2C8	POGZ	SNP	Missense_Mutation	1	151377893	C	G	28	58
BRCA	TCGA-GI-A2C8	LCE4A	SNP	Missense_Mutation	1	152681654	C	T	18	55
BRCA	TCGA-GI-A2C8	FHAD1	SNP	Silent	1	15702190	G	C	39	46
BRCA	TCGA-GI-A2C8	HMCN1	SNP	Silent	1	186026400	T	C	55	51
BRCA	TCGA-GI-A2C8	MDM4	SNP	Missense_Mutation	1	204506608	A	T	3	64
BRCA	TCGA-GI-A2C8	MARK1	SNP	Missense_Mutation	1	220752703	C	G	32	100
BRCA	TCGA-GI-A2C8	USP48	SNP	Missense_Mutation	1	22084163	C	G	32	93
BRCA	TCGA-GI-A2C8	OBSCN	SNP	Silent	1	228495195	A	T	7	50
BRCA	TCGA-GI-A2C8	SNX7	SNP	Missense_Mutation	1	99157223	G	C	33	75
BRCA	TCGA-GI-A2C8	FAM160B1	SNP	Nonsense_Mutation	10	116602860	C	T	29	73
BRCA	TCGA-GI-A2C8	FGFR2	SNP	Missense_Mutation	10	123258049	G	C	48	54
BRCA	TCGA-GI-A2C8	FAM170B	SNP	Missense_Mutation	10	50340195	A	T	6	49
BRCA	TCGA-GI-A2C8	PRDM10	SNP	Missense_Mutation	11	129817174	C	A	32	72
BRCA	TCGA-GI-A2C8	VPS26B	SNP	Silent	11	134104810	G	T	41	52
BRCA	TCGA-GI-A2C8	OR52K2	SNP	Silent	11	4470851	A	T	13	50
BRCA	TCGA-GI-A2C8	NXF1	SNP	Silent	11	62561771	T	C	51	33
BRCA	TCGA-GI-A2C8	NDUFV1	SNP	Missense_Mutation	11	67375917	T	G	64	49
BRCA	TCGA-GI-A2C8	LRP6	SNP	Missense_Mutation	12	12300444	G	A	40	61
BRCA	TCGA-GI-A2C8	GUCY2C	SNP	Missense_Mutation	12	14849213	G	A	38	55
BRCA	TCGA-GI-A2C8	ZC3H13	SNP	Missense_Mutation	13	46619585	T	G	59	89
BRCA	TCGA-GI-A2C8	IPO5	SNP	Missense_Mutation	13	98671984	T	C	55	93
BRCA	TCGA-GI-A2C8	RNASE9	SNP	Missense_Mutation	14	21024763	C	T	31	39
BRCA	TCGA-GI-A2C8	ACIN1	SNP	Missense_Mutation	14	23564377	C	A	23	91
BRCA	TCGA-GI-A2C8	HECTD1	SNP	Missense_Mutation	14	31598424	T	G	55	80
BRCA	TCGA-GI-A2C8	PLEKHD1	SNP	Silent	14	69969563	C	G	23	12
BRCA	TCGA-GI-A2C8	DPF3	SNP	Missense_Mutation	14	73198577	G	A	39	74
BRCA	TCGA-GI-A2C8	SLC24A4	SNP	Missense_Mutation	14	92792293	C	A	17	80
BRCA	TCGA-GI-A2C8	RYR3	SNP	Missense_Mutation	15	33955918	C	T	23	77
BRCA	TCGA-GI-A2C8	USP3	SNP	Silent	15	63866266	C	T	29	57
BRCA	TCGA-GI-A2C8	USP3	SNP	Nonsense_Mutation	15	63866545	C	T	29	99
BRCA	TCGA-GI-A2C8	KLHL25	SNP	Missense_Mutation	15	86311723	A	C	6	91
BRCA	TCGA-GI-A2C8	SSTR5	SNP	Silent	16	1129135	C	T	17	64
BRCA	TCGA-GI-A2C8	CDH1	SNP	Missense_Mutation	16	68847304	G	T	47	74
BRCA	TCGA-GI-A2C8	WDR59	SNP	Silent	16	74946204	G	C	45	51
BRCA	TCGA-GI-A2C8	KRT38	SNP	Silent	17	39596964	C	T	27	46
BRCA	TCGA-GI-A2C8	KRT32	SNP	Missense_Mutation	17	39622349	G	T	42	65
BRCA	TCGA-GI-A2C8	ABCA6	SNP	Silent	17	67081246	C	T	29	59
BRCA	TCGA-GI-A2C8	DNAH17	SNP	Silent	17	76567383	G	A	40	40
BRCA	TCGA-GI-A2C8	ZNF333	SNP	Missense_Mutation	19	14805918	G	C	45	64
BRCA	TCGA-GI-A2C8	ZNF333	SNP	Nonsense_Mutation	19	14829928	C	T	27	53
BRCA	TCGA-GI-A2C8	ZNF431	SNP	Missense_Mutation	19	21365513	A	G	1	49
BRCA	TCGA-GI-A2C8	C19orf76	SNP	Missense_Mutation	19	50193508	C	G	18	54
BRCA	TCGA-GI-A2C8	ZNF841	SNP	Missense_Mutation	19	52579393	T	G	51	39
BRCA	TCGA-GI-A2C8	TTN	SNP	Missense_Mutation	2	179442485	T	C	62	93
BRCA	TCGA-GI-A2C8	TTN	SNP	Missense_Mutation	2	179474059	G	T	48	32
BRCA	TCGA-GI-A2C8	PLEKHM3	SNP	Missense_Mutation	2	208865794	C	A	25	48
BRCA	TCGA-GI-A2C8	CCDC108	SNP	Missense_Mutation	2	219873785	G	C	44	78
BRCA	TCGA-GI-A2C8	DOCK10	SNP	Silent	2	225738767	G	T	45	76
BRCA	TCGA-GI-A2C8	OTOF	SNP	Splice_site	2	26693990	A	C	6	82
BRCA	TCGA-GI-A2C8	SMEK2	SNP	Splice_site	2	55795499	C	T	18	87
BRCA	TCGA-GI-A2C8	SEMA4F	SNP	Missense_Mutation	2	74883757	C	T	26	74
BRCA	TCGA-GI-A2C8	LRRTM4	SNP	Missense_Mutation	2	77746784	T	A	63	90
BRCA	TCGA-GI-A2C8	USP39	SNP	Missense_Mutation	2	85850804	G	A	48	93
BRCA	TCGA-GI-A2C8	CHD6	SNP	Missense_Mutation	20	40118637	C	G	32	58
BRCA	TCGA-GI-A2C8	ITSN1	SNP	Silent	21	35258721	C	G	30	44
BRCA	TCGA-GI-A2C8	DGCR2	SNP	Missense_Mutation	22	19052401	C	A	30	96
BRCA	TCGA-GI-A2C8	MEI1	SNP	Silent	22	42177711	C	T	25	52
BRCA	TCGA-GI-A2C8	COL4A6	SNP	Missense_Mutation	23	107436869	G	T	34	55
BRCA	TCGA-GI-A2C8	GRIA3	SNP	Missense_Mutation	23	122319694	C	A	29	97
BRCA	TCGA-GI-A2C8	ARHGEF6	SNP	Missense_Mutation	23	135767916	C	G	26	62
BRCA	TCGA-GI-A2C8	BEND2	SNP	Missense_Mutation	23	18221806	G	C	34	48
BRCA	TCGA-GI-A2C8	SCML2	SNP	Missense_Mutation	23	18342120	T	C	49	53
BRCA	TCGA-GI-A2C8	PHKA2	SNP	Missense_Mutation	23	18961899	C	A	30	99
BRCA	TCGA-GI-A2C8	CACNA1F	SNP	Missense_Mutation	23	49074448	A	T	14	88
BRCA	TCGA-GI-A2C8	PHF8	SNP	Missense_Mutation	23	53966853	T	A	58	45
BRCA	TCGA-GI-A2C8	NLGN4X	SNP	Missense_Mutation	23	5821686	C	T	31	91
BRCA	TCGA-GI-A2C8	GPR128	SNP	Missense_Mutation	3	100373936	T	A	54	75
BRCA	TCGA-GI-A2C8	CD96	SNP	Missense_Mutation	3	111319651	G	T	36	44
BRCA	TCGA-GI-A2C8	RAP2B	SNP	Nonsense_Mutation	3	152880777	C	T	21	95
BRCA	TCGA-GI-A2C8	PLCH1	SNP	Missense_Mutation	3	155210555	G	A	43	100
BRCA	TCGA-GI-A2C8	KNG1	SNP	Missense_Mutation	3	186459878	G	A	41	60
BRCA	TCGA-GI-A2C8	MUC4	SNP	Missense_Mutation	3	195480096	C	A	22	75
BRCA	TCGA-GI-A2C8	DNAH12	SNP	Missense_Mutation	3	57419473	G	A	48	65
BRCA	TCGA-GI-A2C8	EPHA6	SNP	Missense_Mutation	3	97167503	A	C	6	69
BRCA	TCGA-GI-A2C8	LRBA	SNP	Silent	4	151749586	C	T	24	60
BRCA	TCGA-GI-A2C8	DDX60L	SNP	Missense_Mutation	4	169317267	T	A	64	54
BRCA	TCGA-GI-A2C8	FAT1	SNP	Missense_Mutation	4	187628565	C	T	19	51
BRCA	TCGA-GI-A2C8	ADAMTS19	SNP	Nonsense_Mutation	5	129040064	C	T	27	58
BRCA	TCGA-GI-A2C8	PCDHGA1	SNP	Missense_Mutation	5	140710475	T	C	62	60
BRCA	TCGA-GI-A2C8	ADAM19	SNP	Missense_Mutation	5	156957818	A	G	4	72
BRCA	TCGA-GI-A2C8	ADAMTS2	SNP	Missense_Mutation	5	178552030	G	A	39	59
BRCA	TCGA-GI-A2C8	BTNL3	SNP	Silent	5	180429676	G	A	40	22
BRCA	TCGA-GI-A2C8	IL6ST	SNP	Missense_Mutation	5	55248110	G	C	35	61
BRCA	TCGA-GI-A2C8	HMGCR	SNP	Silent	5	74640149	A	G	7	50
BRCA	TCGA-GI-A2C8	BVES	SNP	Silent	6	105581324	C	A	21	49
BRCA	TCGA-GI-A2C8	ROS1	SNP	Silent	6	117632212	G	C	33	53
BRCA	TCGA-GI-A2C8	MOXD1	SNP	Missense_Mutation	6	132618423	C	G	32	55
BRCA	TCGA-GI-A2C8	ADGB	SNP	Silent	6	147122985	G	A	46	50
BRCA	TCGA-GI-A2C8	LRRC16A	SNP	Missense_Mutation	6	25600888	C	T	27	66
BRCA	TCGA-GI-A2C8	MUC12	SNP	Nonsense_Mutation	7	100647835	C	G	29	59
BRCA	TCGA-GI-A2C8	LAMB1	SNP	Missense_Mutation	7	107572731	C	T	22	98
BRCA	TCGA-GI-A2C8	NUB1	SNP	Silent	7	151071305	C	T	27	43
BRCA	TCGA-GI-A2C8	BZW2	SNP	Missense_Mutation	7	16744257	G	T	45	100
BRCA	TCGA-GI-A2C8	DNAH11	SNP	Missense_Mutation	7	21775366	A	G	2	68
BRCA	TCGA-GI-A2C8	STK31	SNP	Missense_Mutation	7	23793941	G	T	37	59
BRCA	TCGA-GI-A2C8	HECW1	SNP	Missense_Mutation	7	43484164	G	T	43	56
BRCA	TCGA-GI-A2C8	ZNF853	SNP	Missense_Mutation	7	6661429	G	T	34	54
BRCA	TCGA-GI-A2C8	FZD9	SNP	Missense_Mutation	7	72849811	G	A	39	69
BRCA	TCGA-GI-A2C8	MAGI2	SNP	Missense_Mutation	7	77756528	A	T	15	89
BRCA	TCGA-GI-A2C8	MSRA	SNP	Silent	8	10285774	C	T	27	42
BRCA	TCGA-GI-A2C8	FER1L6	SNP	Missense_Mutation	8	125131850	G	A	38	100
BRCA	TCGA-GI-A2C8	BAI1	SNP	Missense_Mutation	8	143561149	G	A	38	92
BRCA	TCGA-GI-A2C8	CSMD1	SNP	Missense_Mutation	8	3200906	G	T	34	50
BRCA	TCGA-GI-A2C8	TTPA	SNP	Missense_Mutation	8	63978530	C	A	18	75
BRCA	TCGA-GI-A2C8	IL11RA	SNP	Missense_Mutation	9	34657465	G	A	43	67