ttype	patient	gene	classification	type	chr	pos	ref_allele	newbase	context65	cons46
BRCA	BR-0002	STAG2	SNP	Splice_Site_SNP	23	123197697	G	C	34	97
BRCA	BR-MEX-005	STAG2	SNP	Missense_Mutation	23	123202482	C	A	19	51
DLBCL	DLBCL-Ls2305	STAG2	SNP	Missense_Mutation	23	123217336	T	G	63	88
DLBCL	DLBCL-MAYO_DLBCL_234	STAG2	SNP	Silent	23	123191801	T	C	52	63
ESO	ESO-0176	STAG2	SNP	Missense_Mutation	23	123181291	G	A	39	99
LUAD	LUAD-B02216	STAG2	SNP	Nonsense_Mutation	23	123181287	G	T	33	99
LUAD	LUAD-E01317	STAG2	SNP	Missense_Mutation	23	123184116	A	G	4	90
LUAD	LUAD-NYU284	STAG2	SNP	Silent	23	123196772	G	A	33	71
LUAD	LUAD-NYU284	STAG2	SNP	Nonsense_Mutation	23	123215302	G	T	33	100
LUAD	LUAD-NYU847	STAG2	SNP	Missense_Mutation	23	123179092	G	T	40	96
LUAD	LUAD-S01345	STAG2	SNP	Splice_site	23	123220619	C	G	29	78
LUAD	LUAD-S01357	STAG2	SNP	Splice_Site	23	123210322	G	C	44	99
MED	MD-141	STAG2	SNP	Missense_Mutation	23	123210253	T	C	63	77
MED	MD-144	STAG2	SNP	Nonsense_Mutation	23	123181311	C	T	19	56
MEL	ME002	STAG2	SNP	Missense_Mutation	23	123181291	G	A	39	99
MEL	ME021	STAG2	SNP	Silent	23	123196802	C	T	29	56
MEL	ME043	STAG2	SNP	Silent	23	123179046	T	C	58	47
MEL	MEL-JWCI-WGS-12	STAG2	SNP	Silent	23	123159735	C	T	31	51
MEL	MEL-JWCI-WGS-12	STAG2	SNP	Missense_Mutation	23	123197800	G	A	45	98
MEL	MEL-Ma-Mel-05	STAG2	SNP	Missense_Mutation	23	123164869	G	A	41	79
MEL	MEL-Ma-Mel-119	STAG2	SNP	Missense_Mutation	23	123179093	T	C	59	88
MM	MM-0408	STAG2	SNP	Synonymous	23	123211824	A	C	11	45
MM	MM-0545	STAG2	SNP	Missense_Mutation	23	123234440	T	A	51	73
LUAD	TCGA-05-4396	STAG2	SNP	Missense_Mutation	23	123195111	G	T	47	98
LUAD	TCGA-05-4396	STAG2	SNP	Missense_Mutation	23	123217337	G	C	47	81
GBM	TCGA-06-0749	STAG2	DEL	Frame_Shift_Del	23	123205046	TA	-	61	53
GBM	TCGA-06-2561	STAG2	SNP	Splice_site	23	123197901	G	C	35	99
GBM	TCGA-06-6388	STAG2	SNP	Nonsense_Mutation	23	123205085	T	A	49	54
GBM	TCGA-12-0692	STAG2	DEL	Frame_Shift_Del	23	123176479	C	-	20	99
GBM	TCGA-12-0821	STAG2	SNP	Splice_Site	23	123176497	T	C	57	90
GBM	TCGA-14-0789	STAG2	INS	Frame_Shift_Ins	23	123176470	-	A	37	99
GBM	TCGA-14-2554	STAG2	SNP	Missense_Mutation	23	123215351	C	A	17	100
LUAD	TCGA-17-Z053	STAG2	SNP	Nonsense_Mutation	23	123229240	C	T	19	58
LUAD	TCGA-17-Z055	STAG2	SNP	Silent	23	123217307	G	A	38	47
GBM	TCGA-19-5955	STAG2	SNP	Nonsense_Mutation	23	123220476	C	T	23	53
OV	TCGA-20-0990	STAG2	SNP	Missense_Mutation	23	123179101	C	T	19	82
LUSC	TCGA-21-5782	STAG2	SNP	Missense_Mutation	23	123224532	C	T	26	79
LUSC	TCGA-22-5473	STAG2	SNP	Missense_Mutation	23	123196827	C	T	30	100
OV	TCGA-24-1563	STAG2	SNP	Silent	23	123184055	C	A	31	56
OV	TCGA-24-2267	STAG2	SNP	Missense_Mutation	23	123200090	A	T	9	91
OV	TCGA-25-1635	STAG2	SNP	Nonsense_Mutation	23	123220410	G	T	41	99
GBM	TCGA-32-5222	STAG2	SNP	Splice_Site	23	123202507	G	T	44	95
LUSC	TCGA-34-2600	STAG2	SNP	Silent	23	123224561	C	T	29	71
LUSC	TCGA-34-5231	STAG2	SNP	Missense_Mutation	23	123205135	A	G	8	90
LUSC	TCGA-34-5927	STAG2	SNP	Missense_Mutation	23	123197734	G	T	48	97
LUAD	TCGA-35-3621	STAG2	SNP	Missense_Mutation	23	123224545	G	A	39	79
LUAD	TCGA-38-4631	STAG2	SNP	Nonsense_Mutation	23	123220443	A	T	3	63
GBM	TCGA-41-4097	STAG2	SNP	Splice_Site	23	123182854	G	T	34	98
LUSC	TCGA-43-6647	STAG2	SNP	Missense_Mutation	23	123205067	G	T	48	59
LUAD	TCGA-44-2656	STAG2	SNP	Missense_Mutation	23	123156495	A	T	1	86
LUAD	TCGA-49-6767	STAG2	SNP	Missense_Mutation	23	123210221	T	C	55	90
LUSC	TCGA-56-6545	STAG2	SNP	Missense_Mutation	23	123164847	G	T	43	82
LUSC	TCGA-56-6545	STAG2	SNP	Splice_Site	23	123227995	G	C	44	98
GBM	TCGA-74-6577	STAG2	SNP	Nonsense_Mutation	23	123197784	C	G	18	50
GBM	TCGA-81-5910	STAG2	SNP	Nonsense_Mutation	23	123171416	C	T	23	56
LUAD	TCGA-91-6829	STAG2	SNP	Missense_Mutation	23	123195708	G	A	33	97
BRCA	TCGA-A2-A0EQ	STAG2	SNP	Missense_Mutation	23	123199793	A	G	8	88
BRCA	TCGA-A2-A0SX	STAG2	SNP	Nonsense_Mutation	23	123195704	G	T	43	97
UCEC	TCGA-A5-A0GP	STAG2	SNP	Nonsense_Mutation	23	123176469	C	T	31	62
UCEC	TCGA-A5-A0GP	STAG2	SNP	Nonsense_Mutation	23	123215311	C	T	31	85
UCEC	TCGA-A5-A0RA	STAG2	SNP	Nonsense_Mutation	23	123197002	C	T	25	84
CRC	TCGA-A6-2678	STAG2	SNP	Missense_Mutation	23	123176443	G	T	33	99
BRCA	TCGA-A7-A0CH	STAG2	SNP	Nonsense_Mutation	23	123220476	C	T	23	53
CRC	TCGA-AA-3555	STAG2	SNP	Missense_Mutation	23	123197837	G	T	33	69
CRC	TCGA-AA-3821	STAG2	DEL	Frame_Shift_Del	23	123171446	T	-	56	89
CRC	TCGA-AA-3984	STAG2	SNP	Missense_Mutation	23	123191804	G	T	44	100
CRC	TCGA-AA-A00N	STAG2	SNP	Silent	23	123185021	T	C	49	59
CRC	TCGA-AA-A010	STAG2	SNP	Missense_Mutation	23	123176435	A	C	1	51
CRC	TCGA-AA-A010	STAG2	SNP	Silent	23	123181256	T	C	49	69
AML	TCGA-AB-2850	STAG2	SNP	Splice_Site	23	123224615	G	A	36	77
AML	TCGA-AB-2871	STAG2	SNP	Splice_Site	23	123191828	G	A	44	99
AML	TCGA-AB-2913	STAG2	SNP	Splice_Site	23	123200288	T	C	60	78
AML	TCGA-AB-2964	STAG2	SNP	Nonsense_Mutation	23	123205041	C	T	29	99
AML	TCGA-AB-2972	STAG2	SNP	Nonsense_Mutation	23	123197716	C	T	27	58
AML	TCGA-AB-2978	STAG2	SNP	Nonsense_Mutation	23	123220476	C	T	23	53
CRC	TCGA-AG-3892	STAG2	SNP	Silent	23	123164930	C	T	17	76
CRC	TCGA-AG-4001	STAG2	SNP	Missense_Mutation	23	123179201	A	G	8	88
UCEC	TCGA-AP-A056	STAG2	SNP	Silent	23	123229296	A	G	4	73
UCEC	TCGA-AP-A059	STAG2	SNP	Missense_Mutation	23	123227989	G	A	33	98
UCEC	TCGA-AP-A0LM	STAG2	SNP	Missense_Mutation	23	123184041	C	T	27	99
UCEC	TCGA-AP-A0LM	STAG2	SNP	Missense_Mutation	23	123197705	A	G	12	88
UCEC	TCGA-AX-A05Z	STAG2	SNP	Missense_Mutation	23	123176490	G	A	37	99
UCEC	TCGA-AX-A06H	STAG2	SNP	Missense_Mutation	23	123202493	C	T	20	95
UCEC	TCGA-AX-A06H	STAG2	SNP	Missense_Mutation	23	123215294	G	C	42	86
UCEC	TCGA-AX-A0J0	STAG2	SNP	Silent	23	123179151	C	A	29	68
UCEC	TCGA-AX-A0J1	STAG2	SNP	Missense_Mutation	23	123179133	G	T	36	57
UCEC	TCGA-AX-A0J1	STAG2	SNP	Missense_Mutation	23	123224531	G	T	34	51
KIRC	TCGA-B0-4700	STAG2	SNP	Missense_Mutation	23	123191777	C	G	30	85
KIRC	TCGA-B0-5709	STAG2	SNP	Missense_Mutation	23	123197875	C	T	23	55
UCEC	TCGA-B5-A0JY	STAG2	SNP	Silent	23	123159735	C	T	31	51
UCEC	TCGA-B5-A0JY	STAG2	SNP	Missense_Mutation	23	123164904	C	T	29	99
UCEC	TCGA-B5-A0JY	STAG2	SNP	Silent	23	123176489	C	T	31	59
UCEC	TCGA-B5-A0JY	STAG2	SNP	Missense_Mutation	23	123181245	C	A	32	86
UCEC	TCGA-B5-A0JY	STAG2	SNP	Missense_Mutation	23	123189994	C	A	32	83
UCEC	TCGA-B5-A0JY	STAG2	SNP	Missense_Mutation	23	123200236	T	G	53	90
UCEC	TCGA-B5-A0JZ	STAG2	SNP	Silent	23	123229236	C	T	17	75
UCEC	TCGA-B5-A11E	STAG2	SNP	Missense_Mutation	23	123185062	G	A	39	98
UCEC	TCGA-B5-A11J	STAG2	SNP	Missense_Mutation	23	123217338	G	A	42	81
BRCA	TCGA-B6-A0I9	STAG2	SNP	Missense_Mutation	23	123195113	G	A	41	98
HNSC	TCGA-BA-5149	STAG2	SNP	Silent	23	123164834	C	T	26	50
HNSC	TCGA-BA-6870	STAG2	SNP	Missense_Mutation	23	123200245	C	A	24	86
UCEC	TCGA-BG-A0M6	STAG2	SNP	Missense_Mutation	23	123195681	C	T	27	97
BRCA	TCGA-BH-A0AW	STAG2	SNP	Missense_Mutation	23	123224532	C	T	26	79
UCEC	TCGA-BK-A0C9	STAG2	SNP	Missense_Mutation	23	123227872	C	T	27	97
BLCA	TCGA-BL-A13J	STAG2	SNP	Missense_Mutation	23	123200039	C	T	29	100
KIRC	TCGA-BP-4985	STAG2	SNP	Nonsense_Mutation	23	123197044	C	T	19	68
KIRC	TCGA-BP-5010	STAG2	SNP	Missense_Mutation	23	123179198	G	A	37	97
UCEC	TCGA-BS-A0TC	STAG2	SNP	Nonsense_Mutation	23	123215302	G	T	33	100
UCEC	TCGA-BS-A0UF	STAG2	SNP	Nonsense_Mutation	23	123224466	G	T	33	86
UCEC	TCGA-BS-A0UL	STAG2	SNP	Silent	23	123196778	A	G	6	41
UCEC	TCGA-BS-A0UV	STAG2	SNP	Missense_Mutation	23	123191727	G	A	40	80
UCEC	TCGA-BS-A0UV	STAG2	SNP	Missense_Mutation	23	123210307	A	G	5	90
BLCA	TCGA-CF-A27C	STAG2	SNP	Nonsense_Mutation	23	123197011	C	T	29	99
BLCA	TCGA-CF-A3MI	STAG2	SNP	Nonsense_Mutation	23	123217380	C	T	31	62
KIRC	TCGA-CJ-4916	STAG2	SNP	Missense_Mutation	23	123179154	T	G	64	63
HNSC	TCGA-CN-4727	STAG2	SNP	Missense_Mutation	23	123217393	G	A	33	62
HNSC	TCGA-CR-7395	STAG2	SNP	Silent	23	123159747	C	T	18	51
HNSC	TCGA-CV-7248	STAG2	SNP	Silent	23	123181323	A	C	11	77
KIRC	TCGA-CZ-4859	STAG2	SNP	Missense_Mutation	23	123184076	A	C	12	90
KIRC	TCGA-CZ-5466	STAG2	DEL	Frame_Shift_Del	23	123195628	AG	-	7	54
UCEC	TCGA-D1-A103	STAG2	SNP	Missense_Mutation	23	123184041	C	T	27	99
UCEC	TCGA-D1-A103	STAG2	SNP	Silent	23	123205073	G	A	34	50
UCEC	TCGA-D1-A15X	STAG2	SNP	Splice_site	23	123195723	G	A	35	97
UCEC	TCGA-D1-A167	STAG2	SNP	Nonsense_Mutation	23	123181311	C	T	19	56
UCEC	TCGA-D1-A16X	STAG2	SNP	Missense_Mutation	23	123189994	C	A	32	83
UCEC	TCGA-D1-A16X	STAG2	SNP	Missense_Mutation	23	123210230	G	A	33	86
UCEC	TCGA-D1-A17H	STAG2	DEL	Frame_Shift_Del	23	123200240	T	-	57	90
UCEC	TCGA-D1-A17Q	STAG2	SNP	Silent	23	123176489	C	T	31	59
UCEC	TCGA-D1-A17Q	STAG2	SNP	Silent	23	123200073	C	A	32	31
BRCA	TCGA-D8-A1X5	STAG2	SNP	Missense_Mutation	23	123196791	A	T	15	58
BLCA	TCGA-DK-A1AA	STAG2	INS	Frame_Shift_Ins	23	123211880	-	T	28	100
BLCA	TCGA-DK-A1AD	STAG2	SNP	Silent	23	123190029	G	T	47	63
BLCA	TCGA-DK-A1AF	STAG2	SNP	Nonsense_Mutation	23	123179197	C	T	31	69
BLCA	TCGA-DK-A3IS	STAG2	SNP	Nonsense_Mutation	23	123197011	C	T	29	99
BRCA	TCGA-E2-A10C	STAG2	SNP	Missense_Mutation	23	123182867	C	G	29	98
BRCA	TCGA-E2-A1B4	STAG2	SNP	Missense_Mutation	23	123211834	A	G	5	90
BLCA	TCGA-E5-A2PC	STAG2	SNP	Splice_Site	23	123182853	A	C	7	89
UCEC	TCGA-E6-A1LZ	STAG2	SNP	Missense_Mutation	23	123171402	C	T	29	97
BRCA	TCGA-E9-A1R0	STAG2	SNP	Missense_Mutation	23	123181291	G	A	39	99
BLCA	TCGA-FD-A3B5	STAG2	SNP	Nonsense_Mutation	23	123200110	C	T	25	96
BLCA	TCGA-FD-A3NA	STAG2	SNP	Missense_Mutation	23	123185061	C	T	31	98
BLCA	TCGA-H4-A2HQ	STAG2	DEL	Frame_Shift_Del	23	123189994	C	-	32	83
HNSC	TCGA-H7-7774	STAG2	SNP	Silent	23	123196817	C	A	23	50