ttype	patient	gene	classification	type	chr	pos	ref_allele	newbase	context65	cons46
BRCA	BR-0036	BRCA1	SNP	Nonsense_Mutation	17	41246468	G	T	34	68
BRCA	BR-MEX-027	BRCA1	SNP	Missense_Mutation	17	41245272	T	A	63	58
CLL	CLL-JP	BRCA1	SNP	Missense_Mutation	17	41245665	C	T	20	44
DLBCL	DLBCL-Ls2590	BRCA1	SNP	Missense_Mutation	17	41246052	G	C	48	55
ESO	ESO-075	BRCA1	SNP	Missense_Mutation	17	41243877	G	A	43	69
HNSC	HN_62699	BRCA1	SNP	Missense	17	41245887	T	C	54	54
HNSC	HN_62739	BRCA1	SNP	Missense	17	41222985	C	T	32	51
HNSC	HN_62739	BRCA1	SNP	Missense	17	41245669	C	T	20	66
LUAD	LUAD-B01024	BRCA1	SNP	Missense_Mutation	17	41256957	T	A	57	57
LUAD	LUAD-F00162	BRCA1	SNP	Missense_Mutation	17	41245978	C	T	26	49
LUAD	LUAD-NYU284	BRCA1	SNP	Silent	17	41223011	T	G	55	47
LUAD	LUAD-NYU545	BRCA1	SNP	Silent	17	41251883	G	A	45	48
LUAD	LUAD-S01315	BRCA1	SNP	Missense_Mutation	17	41222985	C	A	32	51
LUAD	LUAD-S01315	BRCA1	SNP	Silent	17	41244965	G	A	45	61
LUAD	LUAD-S01331	BRCA1	SNP	Silent	17	41246426	T	C	59	52
MEL	ME009	BRCA1	SNP	Silent	17	41245108	G	A	36	51
MEL	ME020	BRCA1	SNP	Silent	17	41245901	A	T	15	54
MEL	ME049	BRCA1	SNP	Silent	17	41244869	C	T	32	49
MEL	MEL-13537	BRCA1	SNP	Missense_Mutation	17	41226504	T	C	53	56
MEL	MEL-JWCI-14	BRCA1	SNP	Nonsense_Mutation	17	41243941	G	A	39	69
MEL	MEL-JWCI-14	BRCA1	SNP	Missense_Mutation	17	41244613	G	A	37	51
MEL	MEL-JWCI-WGS-25	BRCA1	SNP	Missense_Mutation	17	41243572	G	A	46	48
MM	MM-0344	BRCA1	SNP	Missense	17	41256914	C	A	17	52
MM	MM-0493	BRCA1	SNP	Missense_Mutation	17	41245321	T	C	61	54
MM	MM-0629	BRCA1	SNP	Silent	17	41244166	G	A	33	59
OV	TCGA-04-1357	BRCA1	SNP	Nonsense_Mutation	17	41226411	G	A	48	55
LUAD	TCGA-05-4382	BRCA1	SNP	Missense_Mutation	17	41246314	C	A	17	56
LUAD	TCGA-05-4396	BRCA1	SNP	Missense_Mutation	17	41215947	C	A	23	78
LUAD	TCGA-05-4424	BRCA1	SNP	Missense_Mutation	17	41243499	C	G	26	50
LUAD	TCGA-05-5420	BRCA1	SNP	Silent	17	41245544	G	A	45	51
GBM	TCGA-06-0649	BRCA1	SNP	Missense_Mutation	17	41244603	G	A	47	60
GBM	TCGA-06-5858	BRCA1	SNP	Missense_Mutation	17	41243940	C	T	31	43
OV	TCGA-13-0730	BRCA1	SNP	Nonsense_Mutation	17	41197784	G	A	39	53
OV	TCGA-13-0761	BRCA1	DEL	Splice_Site	17	41228504	C	-	18	74
OV	TCGA-13-0804	BRCA1	SNP	Missense_Mutation	17	41258544	G	C	46	56
OV	TCGA-13-1489	BRCA1	INS	Frame_Shift_Ins	17	41243753	-	TT	16	55
LUAD	TCGA-17-Z026	BRCA1	SNP	Missense_Mutation	17	41199690	C	G	32	63
LUAD	TCGA-17-Z042	BRCA1	SNP	Nonsense_Mutation	17	41244214	C	A	32	53
LUSC	TCGA-18-3409	BRCA1	SNP	Missense_Mutation	17	41245974	A	G	2	53
LUSC	TCGA-18-3421	BRCA1	SNP	Nonsense_Mutation	17	41256906	G	A	45	68
LUSC	TCGA-18-5592	BRCA1	SNP	Silent	17	41246321	T	A	53	47
LUSC	TCGA-21-5782	BRCA1	SNP	Missense_Mutation	17	41246589	C	G	32	69
LUSC	TCGA-22-4613	BRCA1	SNP	Missense_Mutation	17	41219706	C	A	19	59
OV	TCGA-23-1026	BRCA1	DEL	Frame_Shift_Del	17	41245110	C	-	30	55
OV	TCGA-24-2035	BRCA1	DEL	Frame_Shift_Del	17	41215914	C	-	30	78
OV	TCGA-25-1625	BRCA1	SNP	Nonsense_Mutation	17	41256234	C	A	29	80
OV	TCGA-25-1630	BRCA1	DEL	Frame_Shift_Del	17	41245991	C	-	32	61
OV	TCGA-25-1632	BRCA1	INS	Frame_Shift_Ins	17	41243899	-	TAAGTTCT	12	54
OV	TCGA-29-2427	BRCA1	SNP	Nonsense_Mutation	17	41246256	A	C	13	54
LUSC	TCGA-34-2600	BRCA1	SNP	Missense_Mutation	17	41243518	C	T	29	57
LUSC	TCGA-34-2600	BRCA1	SNP	Missense_Mutation	17	41244205	C	G	32	58
LUSC	TCGA-34-2600	BRCA1	SNP	Missense_Mutation	17	41244844	C	G	29	51
LUSC	TCGA-39-5028	BRCA1	SNP	Missense_Mutation	17	41246585	C	A	22	81
LUSC	TCGA-39-5037	BRCA1	SNP	Missense_Mutation	17	41245215	C	T	26	49
GBM	TCGA-41-2575	BRCA1	SNP	Missense_Mutation	17	41245683	G	A	38	53
LUSC	TCGA-43-5668	BRCA1	SNP	Splice_Site	17	41215391	C	T	24	77
LUAD	TCGA-44-3396	BRCA1	SNP	Missense_Mutation	17	41244550	C	G	32	54
LUSC	TCGA-46-3769	BRCA1	SNP	Nonsense_Mutation	17	41244070	T	A	64	57
LUAD	TCGA-50-6593	BRCA1	SNP	Missense_Mutation	17	41251814	C	A	32	46
LUSC	TCGA-66-2756	BRCA1	SNP	Missense_Mutation	17	41246004	T	A	54	75
GBM	TCGA-76-4927	BRCA1	SNP	Missense_Mutation	17	41244612	C	T	19	49
LUAD	TCGA-80-5611	BRCA1	SNP	Missense_Mutation	17	41245682	C	T	27	41
LUAD	TCGA-80-5611	BRCA1	SNP	Missense_Mutation	17	41256153	C	G	31	61
BRCA	TCGA-A1-A0SH	BRCA1	SNP	Nonsense_Mutation	17	41244748	G	A	45	56
BRCA	TCGA-A1-A0SI	BRCA1	SNP	Missense_Mutation	17	41276089	C	G	29	53
BRCA	TCGA-A1-A0SK	BRCA1	SNP	Silent	17	41245985	T	C	55	51
BRCA	TCGA-A1-A0SO	BRCA1	SNP	Splice_Site	17	41276033	C	T	18	69
BRCA	TCGA-A7-A26H	BRCA1	DEL	Frame_Shift_Del	17	41245484	TGTC	-	63	60
CRC	TCGA-AA-3715	BRCA1	SNP	Missense_Mutation	17	41246082	T	C	54	63
CRC	TCGA-AA-3977	BRCA1	SNP	Silent	17	41215925	T	C	62	50
CRC	TCGA-AA-3977	BRCA1	SNP	Missense_Mutation	17	41244829	C	T	30	60
CRC	TCGA-AA-3984	BRCA1	SNP	Nonsense_Mutation	17	41226515	G	T	45	56
CRC	TCGA-AA-A00E	BRCA1	SNP	Missense_Mutation	17	41251830	C	T	23	56
CRC	TCGA-AA-A010	BRCA1	SNP	Missense_Mutation	17	41245087	C	A	32	48
CRC	TCGA-AG-A002	BRCA1	SNP	Missense_Mutation	17	41246189	C	A	32	50
BRCA	TCGA-AN-A0XU	BRCA1	SNP	Missense_Mutation	17	41201181	C	A	18	76
BRCA	TCGA-AO-A1KR	BRCA1	DEL	In_Frame_Del	17	41245615	AAC	-	9	50
UCEC	TCGA-AP-A051	BRCA1	SNP	Missense_Mutation	17	41244009	C	A	28	48
UCEC	TCGA-AP-A051	BRCA1	SNP	Missense_Mutation	17	41245828	G	T	36	46
UCEC	TCGA-AP-A051	BRCA1	SNP	Missense_Mutation	17	41258540	G	T	34	55
UCEC	TCGA-AP-A056	BRCA1	SNP	Missense_Mutation	17	41243774	C	A	32	58
UCEC	TCGA-AP-A056	BRCA1	SNP	Missense_Mutation	17	41244562	T	G	62	46
UCEC	TCGA-AP-A0LM	BRCA1	SNP	Missense_Mutation	17	41245683	G	A	38	53
BRCA	TCGA-AR-A0U4	BRCA1	INS	Frame_Shift_Ins	17	41244185	-	T	16	49
UCEC	TCGA-AX-A0J0	BRCA1	SNP	Nonsense_Mutation	17	41245531	C	A	32	80
KIRC	TCGA-B0-4824	BRCA1	SNP	Silent	17	41246254	G	C	36	48
UCEC	TCGA-B5-A0JY	BRCA1	SNP	Missense_Mutation	17	41246166	A	C	1	63
UCEC	TCGA-B5-A11E	BRCA1	SNP	Silent	17	41223140	G	A	35	47
UCEC	TCGA-B5-A11E	BRCA1	SNP	Nonsense_Mutation	17	41234451	G	A	38	55
UCEC	TCGA-B5-A11E	BRCA1	SNP	Missense_Mutation	17	41244723	G	A	42	61
UCEC	TCGA-B5-A11G	BRCA1	SNP	Missense_Mutation	17	41244451	C	T	32	62
UCEC	TCGA-B5-A11J	BRCA1	SNP	Silent	17	41246507	C	T	17	35
UCEC	TCGA-B5-A11N	BRCA1	SNP	Missense_Mutation	17	41245616	A	C	2	57
BRCA	TCGA-B6-A0X1	BRCA1	DEL	Frame_Shift_Del	17	41276047	C	-	32	69
HNSC	TCGA-BA-6872	BRCA1	SNP	Missense_Mutation	17	41244991	C	T	29	81
BRCA	TCGA-BH-A0DS	BRCA1	SNP	Missense_Mutation	17	41199695	T	A	55	71
BRCA	TCGA-BH-A0WA	BRCA1	SNP	Splice_Site	17	41223256	C	T	32	74
KIRC	TCGA-BP-4160	BRCA1	SNP	Missense_Mutation	17	41267787	C	A	29	54
KIRC	TCGA-BP-4998	BRCA1	SNP	Missense_Mutation	17	41197795	G	A	35	64
UCEC	TCGA-BS-A0TC	BRCA1	SNP	Missense_Mutation	17	41245921	C	A	21	51
UCEC	TCGA-BS-A0UF	BRCA1	SNP	Splice_Site	17	41201212	C	A	32	77
UCEC	TCGA-BS-A0UF	BRCA1	SNP	Silent	17	41226451	A	T	11	56
UCEC	TCGA-BS-A0UF	BRCA1	SNP	Missense_Mutation	17	41243927	C	A	32	58
UCEC	TCGA-BS-A0UJ	BRCA1	SNP	Missense_Mutation	17	41234570	T	C	60	77
UCEC	TCGA-BS-A0UV	BRCA1	SNP	Missense_Mutation	17	41234450	C	T	31	46
BLCA	TCGA-BT-A20W	BRCA1	SNP	Missense_Mutation	17	41244840	C	G	17	57
BLCA	TCGA-BT-A3PH	BRCA1	SNP	Missense_Mutation	17	41245834	C	T	32	62
BRCA	TCGA-C8-A12T	BRCA1	SNP	Missense_Mutation	17	41243518	C	G	29	57
KIRC	TCGA-CJ-4643	BRCA1	SNP	Missense_Mutation	17	41234582	G	C	44	70
HNSC	TCGA-CN-5363	BRCA1	SNP	Silent	17	41246660	T	C	62	53
HNSC	TCGA-CQ-5326	BRCA1	SNP	Silent	17	41256889	C	T	21	49
HNSC	TCGA-CR-7404	BRCA1	SNP	Missense_Mutation	17	41243826	G	A	33	57
HNSC	TCGA-CR-7404	BRCA1	SNP	Missense_Mutation	17	41245102	G	A	45	53
HNSC	TCGA-CV-7097	BRCA1	SNP	Missense_Mutation	17	41228515	C	T	24	63
HNSC	TCGA-CV-7099	BRCA1	SNP	Missense_Mutation	17	41246860	C	G	29	67
HNSC	TCGA-CV-7245	BRCA1	SNP	Missense_Mutation	17	41226510	C	T	32	52
HNSC	TCGA-CV-7248	BRCA1	SNP	Missense_Mutation	17	41245558	T	C	55	58
HNSC	TCGA-CV-7250	BRCA1	SNP	Missense_Mutation	17	41222997	C	A	24	51
HNSC	TCGA-CV-7424	BRCA1	SNP	Silent	17	41276072	G	A	45	54
KIRC	TCGA-CZ-4853	BRCA1	SNP	Missense_Mutation	17	41243622	T	A	52	63
KIRC	TCGA-CZ-4853	BRCA1	SNP	Missense_Mutation	17	41243623	T	G	64	74
UCEC	TCGA-D1-A167	BRCA1	SNP	Silent	17	41244935	C	T	19	56
UCEC	TCGA-D1-A17Q	BRCA1	SNP	Missense_Mutation	17	41244663	T	G	62	69
UCEC	TCGA-D1-A17Q	BRCA1	SNP	Silent	17	41245720	T	G	53	75
UCEC	TCGA-D1-A17Q	BRCA1	SNP	Missense_Mutation	17	41245866	G	T	33	48
HNSC	TCGA-D6-6823	BRCA1	SNP	Splice_Site	17	41256883	A	C	14	75
BLCA	TCGA-DK-A1AE	BRCA1	SNP	Missense_Mutation	17	41246211	C	G	32	59
BLCA	TCGA-DK-A3IN	BRCA1	SNP	Silent	17	41246522	C	G	29	55
BRCA	TCGA-E2-A1L9	BRCA1	SNP	Missense_Mutation	17	41244468	C	A	28	67
BLCA	TCGA-G2-A2EL	BRCA1	SNP	Nonsense_Mutation	17	41243707	G	A	45	56