ttype	patient	gene	classification	type	chr	pos	ref_allele	newbase	context65	cons46
CLL	CLL_89	BAP1	SNP	Missense_Mutation	3	52439211	T	C	52	62
DLBCL	DLBCL-MAYO_DLBCL_234	BAP1	SNP	Silent	3	52437637	G	A	34	55
ESO	ESO-1872	BAP1	SNP	Missense_Mutation	3	52440343	G	A	39	88
ESO	ESO-2143	BAP1	SNP	Missense_Mutation	3	52437282	G	T	44	54
ESO	ESO-721	BAP1	SNP	Missense_Mutation	3	52441981	C	G	28	87
LUAD	LUAD-F00257	BAP1	SNP	Missense_Mutation	3	52441433	G	A	42	98
LUAD	LUAD-F00368	BAP1	SNP	Silent	3	52441194	G	A	44	61
MEL	MEL-JWCI-WGS-34	BAP1	SNP	Missense_Mutation	3	52437209	T	A	56	64
MM	MM-0600	BAP1	SNP	Missense_Mutation	3	52437224	G	A	40	51
LUAD	TCGA-05-4396	BAP1	SNP	Missense_Mutation	3	52441448	G	T	39	97
OV	TCGA-13-0714	BAP1	SNP	Missense_Mutation	3	52440373	G	A	39	88
OV	TCGA-13-0899	BAP1	SNP	Missense_Mutation	3	52440373	G	A	39	88
LUSC	TCGA-21-1078	BAP1	SNP	Missense_Mutation	3	52440372	C	T	27	100
LUSC	TCGA-21-1078	BAP1	DEL	In_Frame_Del	3	52441280	TCCGCACTGCACTAAGGCCAT	-	58	91
GBM	TCGA-26-5133	BAP1	SNP	Missense_Mutation	3	52442518	A	G	4	92
GBM	TCGA-32-2498	BAP1	SNP	Missense_Mutation	3	52440327	T	C	54	94
LUAD	TCGA-49-4506	BAP1	DNP	Missense_Mutation	3	52437180	AG	TA	3	50
LUAD	TCGA-49-4510	BAP1	SNP	Missense_Mutation	3	52441235	G	A	39	69
LUSC	TCGA-60-2708	BAP1	SNP	Silent	3	52443746	C	A	25	54
LUAD	TCGA-73-4670	BAP1	SNP	Missense_Mutation	3	52439224	C	T	24	74
LUAD	TCGA-73-4670	BAP1	SNP	Nonsense_Mutation	3	52442492	G	A	47	100
BRCA	TCGA-A2-A0EQ	BAP1	SNP	Missense_Mutation	3	52442600	G	C	35	69
KIRC	TCGA-A3-3317	BAP1	SNP	Nonsense_Mutation	3	52438515	C	A	29	93
UCEC	TCGA-A5-A0GA	BAP1	SNP	Missense_Mutation	3	52437188	C	T	26	58
CRC	TCGA-AA-3518	BAP1	SNP	Missense_Mutation	3	52437627	G	A	39	88
CRC	TCGA-AA-A010	BAP1	SNP	Missense_Mutation	3	52439816	T	C	60	53
KIRC	TCGA-AK-3451	BAP1	SNP	Missense_Mutation	3	52442521	T	C	50	92
UCEC	TCGA-AP-A051	BAP1	SNP	Missense_Mutation	3	52439173	G	T	34	76
UCEC	TCGA-AP-A051	BAP1	SNP	Silent	3	52441989	C	T	24	51
UCEC	TCGA-AP-A059	BAP1	SNP	Splice_site	3	52436618	C	A	24	100
UCEC	TCGA-AP-A059	BAP1	SNP	Silent	3	52436834	C	T	19	47
UCEC	TCGA-AP-A059	BAP1	SNP	Missense_Mutation	3	52438524	C	T	30	93
UCEC	TCGA-AP-A059	BAP1	SNP	Silent	3	52442616	T	C	49	47
UCEC	TCGA-AP-A0LP	BAP1	SNP	Missense_Mutation	3	52436395	C	T	23	87
UCEC	TCGA-AX-A0J1	BAP1	SNP	Missense_Mutation	3	52437675	C	T	26	100
KIRC	TCGA-B0-4691	BAP1	SNP	Nonsense_Mutation	3	52441470	C	A	24	98
KIRC	TCGA-B0-4703	BAP1	SNP	Splice_Site	3	52443728	A	C	14	87
KIRC	TCGA-B0-4707	BAP1	DEL	Frame_Shift_Del	3	52442513	TCAC	-	62	92
KIRC	TCGA-B0-4713	BAP1	SNP	Splice_Site	3	52443729	C	G	18	95
KIRC	TCGA-B0-4827	BAP1	DEL	Frame_Shift_Del	3	52439864	T	-	54	80
KIRC	TCGA-B0-4842	BAP1	SNP	Silent	3	52439306	A	C	6	51
KIRC	TCGA-B0-5075	BAP1	DEL	Frame_Shift_Del	3	52439219	GCTGCCTGGAGGCTTCACCA	-	46	58
KIRC	TCGA-B0-5080	BAP1	DEL	Frame_Shift_Del	3	52439206	C	-	18	73
KIRC	TCGA-B0-5088	BAP1	SNP	Missense_Mutation	3	52443866	C	G	28	93
KIRC	TCGA-B0-5092	BAP1	SNP	Nonsense_Mutation	3	52439913	G	A	48	85
KIRC	TCGA-B0-5092	BAP1	SNP	Nonsense_Mutation	3	52440295	G	A	45	87
KIRC	TCGA-B0-5095	BAP1	SNP	Nonsense_Mutation	3	52437782	G	C	45	73
KIRC	TCGA-B0-5096	BAP1	SNP	Splice_site	3	52443894	T	C	50	86
KIRC	TCGA-B0-5097	BAP1	SNP	Missense_Mutation	3	52441262	A	C	3	91
KIRC	TCGA-B0-5107	BAP1	SNP	Missense_Mutation	3	52442512	T	C	52	92
KIRC	TCGA-B0-5699	BAP1	DEL	Frame_Shift_Del	3	52436362	T	-	56	92
KIRC	TCGA-B0-5709	BAP1	DEL	Frame_Shift_Del	3	52439161	G	-	33	69
UCEC	TCGA-B5-A0JY	BAP1	SNP	Silent	3	52437235	G	A	37	43
UCEC	TCGA-B5-A0JY	BAP1	SNP	Missense_Mutation	3	52443599	C	A	32	74
UCEC	TCGA-B5-A11E	BAP1	SNP	Missense_Mutation	3	52437519	G	A	39	87
UCEC	TCGA-B5-A11H	BAP1	SNP	Missense_Mutation	3	52440873	T	C	51	93
UCEC	TCGA-B5-A11Y	BAP1	SNP	Missense_Mutation	3	52437677	G	A	40	100
KIRC	TCGA-B8-4143	BAP1	SNP	Nonsense_Mutation	3	52437163	G	C	36	62
KIRC	TCGA-B8-4151	BAP1	DEL	Frame_Shift_Del	3	52436345	G	-	39	55
KIRC	TCGA-B8-5551	BAP1	SNP	Splice_Site	3	52443729	C	T	18	95
HNSC	TCGA-BA-5556	BAP1	SNP	Missense_Mutation	3	52441440	C	T	26	98
BRCA	TCGA-BH-A0HA	BAP1	SNP	Missense_Mutation	3	52440905	T	C	54	93
KIRC	TCGA-BP-4163	BAP1	SNP	Nonsense_Mutation	3	52439876	G	T	45	72
KIRC	TCGA-BP-4337	BAP1	SNP	Nonsense_Mutation	3	52442567	G	A	38	71
KIRC	TCGA-BP-4340	BAP1	SNP	Splice_site	3	52436689	A	T	4	80
KIRC	TCGA-BP-4352	BAP1	SNP	Missense_Mutation	3	52440367	T	G	63	94
KIRC	TCGA-BP-4355	BAP1	SNP	Missense_Mutation	3	52442585	C	T	31	100
KIRC	TCGA-BP-4798	BAP1	SNP	Splice_Site	3	52439312	T	C	55	81
KIRC	TCGA-BP-4962	BAP1	SNP	Missense_Mutation	3	52443892	C	T	29	94
KIRC	TCGA-BP-5174	BAP1	DEL	Frame_Shift_Del	3	52436397	C	-	26	50
KIRC	TCGA-BP-5182	BAP1	SNP	Missense_Mutation	3	52443892	C	T	29	94
UCEC	TCGA-BS-A0U7	BAP1	SNP	Missense_Mutation	3	52438493	A	G	6	62
KIRC	TCGA-CJ-4636	BAP1	SNP	Splice_Site	3	52443568	A	G	6	90
KIRC	TCGA-CJ-4637	BAP1	SNP	Missense_Mutation	3	52442512	T	C	52	92
KIRC	TCGA-CJ-4638	BAP1	SNP	Nonsense_Mutation	3	52443574	G	A	45	83
KIRC	TCGA-CJ-4641	BAP1	SNP	Nonsense_Mutation	3	52441304	G	A	46	99
KIRC	TCGA-CJ-4873	BAP1	SNP	Missense_Mutation	3	52442023	C	A	30	100
KIRC	TCGA-CJ-4881	BAP1	SNP	Missense_Mutation	3	52442600	G	C	35	69
KIRC	TCGA-CJ-4882	BAP1	SNP	Missense_Mutation	3	52443600	T	G	54	90
KIRC	TCGA-CJ-4923	BAP1	SNP	Nonsense_Mutation	3	52437168	T	A	62	71
KIRC	TCGA-CJ-5680	BAP1	DEL	Frame_Shift_Del	3	52442523	A	-	8	40
HNSC	TCGA-CN-5364	BAP1	SNP	Missense_Mutation	3	52437288	T	G	51	53
BLCA	TCGA-CU-A0YR	BAP1	SNP	Missense_Mutation	3	52440379	C	G	31	100
HNSC	TCGA-CV-7263	BAP1	DEL	Frame_Shift_Del	3	52439912	TG	-	55	80
KIRC	TCGA-CW-5580	BAP1	SNP	Missense_Mutation	3	52443747	A	G	7	87
KIRC	TCGA-CZ-4866	BAP1	SNP	Missense_Mutation	3	52441418	G	C	42	84
KIRC	TCGA-CZ-4866	BAP1	SNP	Splice_Site	3	52443568	A	T	6	90
KIRC	TCGA-CZ-5452	BAP1	DEL	Frame_Shift_Del	3	52438499	T	-	50	83
KIRC	TCGA-CZ-5469	BAP1	SNP	Missense_Mutation	3	52441261	A	C	1	91
KIRC	TCGA-CZ-5470	BAP1	DEL	Splice_site	3	52443623	ACCTGCGATGAGGAAAGGAAAGCAG	-	6	52
KIRC	TCGA-CZ-5985	BAP1	SNP	Splice_Site	3	52439311	C	A	32	87
BRCA	TCGA-D8-A27F	BAP1	DEL	Frame_Shift_Del	3	52436639	TAAAGGTGCAGATGAACTCATCGTAG	-	49	80
BLCA	TCGA-DK-A1A5	BAP1	SNP	Missense_Mutation	3	52442604	G	C	33	83
BLCA	TCGA-GC-A3RB	BAP1	SNP	Missense_Mutation	3	52439230	G	A	42	60
BLCA	TCGA-HQ-A2OE	BAP1	SNP	Missense_Mutation	3	52436687	C	G	29	100
BLCA	TCGA-HQ-A2OE	BAP1	SNP	Missense_Mutation	3	52436810	C	G	32	67