ttype	patient	gene	classification	type	chr	pos	ref_allele	newbase	context65	cons46
DLBCL	DLBCL-MAYO_DLBCL_234	ALK	SNP	Silent	2	29449825	G	A	40	33
DLBCL	DLBCL-MAYO_DLBCL_234	ALK	SNP	Missense_Mutation	2	29543727	T	C	57	66
ESO	ESO-0013	ALK	SNP	Missense_Mutation	2	29541214	T	G	58	77
ESO	ESO-1154	ALK	SNP	Missense_Mutation	2	29445420	A	T	8	70
ESO	ESO-117	ALK	SNP	Silent	2	29445413	G	A	40	38
ESO	ESO-120	ALK	SNP	Missense_Mutation	2	29462658	T	G	56	58
ESO	ESO-175	ALK	SNP	Missense_Mutation	2	29432685	A	C	4	90
ESO	ESO-838	ALK	SNP	Silent	2	29498089	G	A	38	44
LUAD	LUAD-74TBW	ALK	SNP	Missense_Mutation	2	29917736	C	A	19	46
LUAD	LUAD-E00897	ALK	SNP	Missense_Mutation	2	29940490	C	A	30	80
LUAD	LUAD-F00089	ALK	SNP	Missense_Mutation	2	29917788	G	T	43	53
LUAD	LUAD-NYU201	ALK	SNP	Missense_Mutation	2	29498010	G	A	44	49
LUAD	LUAD-NYU315	ALK	SNP	Missense_Mutation	2	29940491	C	G	21	80
LUAD	LUAD-S01356	ALK	SNP	Silent	2	30143340	C	G	27	47
MEL	ME020	ALK	SNP	Missense_Mutation	2	29519902	G	A	37	66
MEL	MEL-JWCI-WGS-1	ALK	SNP	Missense_Mutation	2	29519902	G	A	37	66
MEL	MEL-Ma-Mel-114	ALK	SNP	Missense_Mutation	2	29430119	C	T	22	100
MEL	MEL-Ma-Mel-119	ALK	SNP	Missense_Mutation	2	29451835	C	T	29	71
MEL	MEL-Ma-Mel-79	ALK	SNP	Missense_Mutation	2	29456465	C	T	30	94
MM	MM-0512	ALK	SNP	Missense_Mutation	2	29445418	G	A	42	96
MM	MM-0553	ALK	SNP	Silent	2	29754894	C	T	21	61
NB	NB-0419	ALK	SNP	Missense_Mutation	2	29445213	A	T	12	92
NB	NB-0462	ALK	SNP	Missense_Mutation	2	29443695	G	T	45	87
NB	NB-1155	ALK	SNP	Missense_Mutation	2	29432664	C	T	31	98
NB	NB-1659	ALK	SNP	Missense_Mutation	2	29432664	C	T	31	98
NB	NB-1956	ALK	SNP	Missense_Mutation	2	29443695	G	T	45	87
NB	NB-3270	ALK	SNP	Missense_Mutation	2	29436860	A	T	3	92
LUAD	TCGA-05-4382	ALK	SNP	Silent	2	29416585	G	T	47	41
LUAD	TCGA-05-4382	ALK	SNP	Missense_Mutation	2	29754890	C	A	19	79
LUAD	TCGA-05-4396	ALK	SNP	Silent	2	29416300	C	A	23	38
LUAD	TCGA-05-4396	ALK	SNP	Missense_Mutation	2	29450451	G	T	47	76
LUAD	TCGA-05-4396	ALK	SNP	Splice_Site	2	29917881	C	A	24	79
LUAD	TCGA-05-4397	ALK	SNP	Missense_Mutation	2	30143288	G	T	34	54
LUAD	TCGA-05-4398	ALK	SNP	Missense_Mutation	2	29497970	G	T	35	76
LUAD	TCGA-05-4410	ALK	SNP	Missense_Mutation	2	29446262	G	A	44	69
LUAD	TCGA-05-4410	ALK	SNP	Silent	2	29519836	T	G	55	49
LUAD	TCGA-05-4427	ALK	SNP	Silent	2	30143133	G	A	39	47
LUAD	TCGA-05-4432	ALK	DNP	Splice_Site	2	29917880	CC	AT	18	79
OV	TCGA-13-0730	ALK	SNP	Missense_Mutation	2	29416770	T	A	59	77
GBM	TCGA-15-1444	ALK	SNP	Missense_Mutation	2	29917797	G	A	38	79
LUAD	TCGA-17-Z001	ALK	SNP	Missense_Mutation	2	29474042	G	T	38	52
LUAD	TCGA-17-Z025	ALK	SNP	Nonsense_Mutation	2	29917779	C	A	30	79
LUAD	TCGA-17-Z026	ALK	SNP	Silent	2	29448340	G	T	39	33
LUAD	TCGA-17-Z030	ALK	SNP	Silent	2	29754879	G	A	48	57
LUAD	TCGA-17-Z031	ALK	SNP	Silent	2	29455249	G	T	47	82
LUAD	TCGA-17-Z031	ALK	SNP	Missense_Mutation	2	29551311	G	C	41	64
LUAD	TCGA-17-Z036	ALK	SNP	Missense_Mutation	2	29541192	G	C	39	82
LUAD	TCGA-17-Z043	ALK	DNP	Missense_Mutation	2	29940451	GC	AA	42	41
LUAD	TCGA-17-Z056	ALK	SNP	Silent	2	29451871	C	T	24	60
LUAD	TCGA-17-Z060	ALK	SNP	Silent	2	29940508	A	G	13	54
LUSC	TCGA-18-3409	ALK	SNP	Missense_Mutation	2	29416491	C	T	30	76
LUSC	TCGA-18-4086	ALK	SNP	Missense_Mutation	2	29456502	G	C	39	67
LUSC	TCGA-22-4599	ALK	SNP	Silent	2	29754882	C	A	25	54
LUSC	TCGA-22-4613	ALK	SNP	Missense_Mutation	2	29446232	G	T	39	98
LUSC	TCGA-22-5474	ALK	SNP	Silent	2	29917801	G	A	35	51
OV	TCGA-24-1427	ALK	SNP	Missense_Mutation	2	29940556	G	T	34	51
OV	TCGA-24-2267	ALK	SNP	Missense_Mutation	2	30143334	G	T	41	54
OV	TCGA-25-1313	ALK	SNP	Silent	2	29446231	C	T	27	1
GBM	TCGA-32-4211	ALK	SNP	Splice_site	2	29443572	C	T	23	58
LUAD	TCGA-38-4626	ALK	SNP	Missense_Mutation	2	29551252	C	A	30	64
LUSC	TCGA-39-5022	ALK	SNP	Missense_Mutation	2	29416544	G	A	42	75
LUAD	TCGA-44-2656	ALK	SNP	Missense_Mutation	2	29551271	C	A	24	56
LUAD	TCGA-44-4112	ALK	SNP	Missense_Mutation	2	29551229	C	A	32	54
LUAD	TCGA-44-6776	ALK	SNP	Missense_Mutation	2	29455189	G	T	40	51
LUAD	TCGA-44-6777	ALK	SNP	Missense_Mutation	2	29551314	C	A	28	76
LUAD	TCGA-49-6767	ALK	SNP	Silent	2	29498008	G	C	39	50
LUAD	TCGA-49-6767	ALK	SNP	Silent	2	29498359	G	A	33	64
LUAD	TCGA-50-5930	ALK	SNP	Missense_Mutation	2	29416683	G	T	33	66
LUAD	TCGA-50-5930	ALK	SNP	Missense_Mutation	2	29462643	C	A	23	81
LUAD	TCGA-50-5930	ALK	SNP	Missense_Mutation	2	29519873	C	A	21	78
LUAD	TCGA-50-5946	ALK	SNP	Nonsense_Mutation	2	29754815	C	A	32	67
LUAD	TCGA-55-1592	ALK	SNP	Missense_Mutation	2	29519878	A	G	10	73
LUAD	TCGA-64-1677	ALK	SNP	Silent	2	29498008	G	T	39	50
LUAD	TCGA-64-1678	ALK	SNP	Missense_Mutation	2	30143102	C	A	18	80
LUAD	TCGA-64-5781	ALK	SNP	Missense_Mutation	2	29416528	G	T	40	56
LUAD	TCGA-64-5781	ALK	SNP	Silent	2	29450489	C	A	22	50
LUAD	TCGA-64-5781	ALK	SNP	Silent	2	29917834	A	T	11	43
LUSC	TCGA-66-2742	ALK	SNP	Missense_Mutation	2	29917817	C	T	24	79
LUAD	TCGA-75-6207	ALK	SNP	Silent	2	29456482	A	G	8	45
LUAD	TCGA-91-6829	ALK	SNP	Silent	2	29551274	C	G	26	36
LUAD	TCGA-91-6831	ALK	SNP	Silent	2	29551313	G	A	34	42
LUAD	TCGA-91-6836	ALK	SNP	Missense_Mutation	2	29420529	G	T	34	56
LUAD	TCGA-91-6836	ALK	SNP	Silent	2	29519816	G	T	39	52
BRCA	TCGA-A2-A0T0	ALK	DEL	In_Frame_Del	2	29432670	ATCCCG	-	8	90
UCEC	TCGA-A5-A0R6	ALK	SNP	Nonsense_Mutation	2	29498334	C	A	22	75
CRC	TCGA-A6-2676	ALK	SNP	Splice_site	2	29917879	A	G	10	54
CRC	TCGA-AA-3514	ALK	SNP	Silent	2	29443698	T	C	52	63
CRC	TCGA-AA-3518	ALK	SNP	Missense_Mutation	2	29430046	G	T	48	98
CRC	TCGA-AA-3554	ALK	SNP	Silent	2	29455174	G	A	39	52
CRC	TCGA-AA-3562	ALK	SNP	Nonsense_Mutation	2	29498049	T	A	56	72
CRC	TCGA-AA-3710	ALK	SNP	Missense_Mutation	2	29451871	C	A	24	60
CRC	TCGA-AA-3715	ALK	SNP	Missense_Mutation	2	29551323	G	A	42	76
CRC	TCGA-AA-3818	ALK	SNP	Missense_Mutation	2	29497989	G	T	48	57
CRC	TCGA-AA-3845	ALK	SNP	Splice_site	2	29541170	C	A	24	82
CRC	TCGA-AA-3864	ALK	SNP	Silent	2	29606701	G	A	37	52
CRC	TCGA-AA-3947	ALK	SNP	Silent	2	29462663	G	A	38	50
CRC	TCGA-AA-3976	ALK	SNP	Missense_Mutation	2	29606700	C	T	23	82
CRC	TCGA-AA-3977	ALK	SNP	Missense_Mutation	2	29606618	G	A	42	70
CRC	TCGA-AA-3984	ALK	SNP	Silent	2	29519819	G	A	37	34
CRC	TCGA-AA-A00N	ALK	SNP	Missense_Mutation	2	29416634	G	A	42	62
CRC	TCGA-AA-A01R	ALK	SNP	Nonsense_Mutation	2	29606679	G	A	37	82
AML	TCGA-AB-2808	ALK	SNP	Missense_Mutation	2	29917847	A	G	7	75
AML	TCGA-AB-2863	ALK	SNP	Missense_Mutation	2	29940537	T	A	64	50
CRC	TCGA-AG-3609	ALK	SNP	Silent	2	29450510	G	T	39	40
CRC	TCGA-AG-3609	ALK	SNP	Missense_Mutation	2	29519818	C	T	27	60
CRC	TCGA-AG-A002	ALK	SNP	Silent	2	29416201	G	A	40	50
CRC	TCGA-AG-A002	ALK	SNP	Missense_Mutation	2	29543728	A	C	13	77
CRC	TCGA-AG-A002	ALK	SNP	Silent	2	29606605	G	A	46	70
CRC	TCGA-AG-A002	ALK	SNP	Nonsense_Mutation	2	29606679	G	A	37	82
BRCA	TCGA-AN-A04A	ALK	SNP	Silent	2	29416321	G	A	40	50
UCEC	TCGA-AP-A051	ALK	SNP	Silent	2	29416201	G	A	40	50
UCEC	TCGA-AP-A051	ALK	SNP	Silent	2	29420416	A	G	7	16
UCEC	TCGA-AP-A051	ALK	SNP	Silent	2	29455240	G	A	48	50
UCEC	TCGA-AP-A051	ALK	SNP	Missense_Mutation	2	30142942	G	A	38	60
UCEC	TCGA-AP-A051	ALK	SNP	Silent	2	30143385	C	T	27	43
UCEC	TCGA-AP-A059	ALK	SNP	Missense_Mutation	2	29416607	G	T	33	78
UCEC	TCGA-AP-A059	ALK	SNP	Missense_Mutation	2	29940532	C	T	25	44
UCEC	TCGA-AP-A05N	ALK	SNP	Missense_Mutation	2	29449904	T	C	49	74
UCEC	TCGA-AP-A0LD	ALK	SNP	Missense_Mutation	2	29416281	C	G	32	100
UCEC	TCGA-AP-A0LM	ALK	SNP	Splice_site	2	29446209	G	A	37	70
UCEC	TCGA-AP-A0LM	ALK	SNP	Missense_Mutation	2	29446229	C	T	23	98
UCEC	TCGA-AP-A0LM	ALK	SNP	Silent	2	29455189	G	A	40	51
UCEC	TCGA-AP-A0LM	ALK	SNP	Missense_Mutation	2	29606702	A	C	12	77
UCEC	TCGA-AP-A0LT	ALK	SNP	Missense_Mutation	2	29606606	C	T	25	82
UCEC	TCGA-AX-A05Z	ALK	SNP	Missense_Mutation	2	29473997	C	A	30	99
UCEC	TCGA-AX-A060	ALK	SNP	Missense_Mutation	2	29462665	C	A	24	79
UCEC	TCGA-AX-A0J0	ALK	SNP	Silent	2	29462672	G	A	38	43
KIRC	TCGA-B0-4703	ALK	SNP	Missense_Mutation	2	29443697	A	G	4	93
KIRC	TCGA-B0-5694	ALK	SNP	Missense_Mutation	2	29917822	G	C	44	49
UCEC	TCGA-B5-A0JY	ALK	SNP	Missense_Mutation	2	29430052	G	T	33	86
UCEC	TCGA-B5-A0JY	ALK	SNP	Silent	2	29432705	G	A	42	41
UCEC	TCGA-B5-A0JY	ALK	SNP	Missense_Mutation	2	29543705	G	T	33	63
UCEC	TCGA-B5-A0K2	ALK	SNP	Splice_site	2	29432652	C	A	24	98
UCEC	TCGA-B5-A11E	ALK	SNP	Silent	2	29462582	G	T	41	69
UCEC	TCGA-B5-A11H	ALK	SNP	Missense_Mutation	2	29416647	G	A	38	67
KIRC	TCGA-B8-5163	ALK	SNP	Missense_Mutation	2	29420425	C	G	32	69
UCEC	TCGA-BG-A18B	ALK	SNP	Silent	2	29456458	T	C	54	25
BRCA	TCGA-BH-A0E0	ALK	SNP	Nonsense_Mutation	2	29432665	G	A	39	74
BRCA	TCGA-BH-A0E1	ALK	SNP	Silent	2	29917810	C	T	32	61
KIRC	TCGA-BP-4789	ALK	SNP	Missense_Mutation	2	29450494	C	T	32	68
UCEC	TCGA-BS-A0TA	ALK	SNP	Missense_Mutation	2	30142885	C	T	27	94
UCEC	TCGA-BS-A0TA	ALK	SNP	Missense_Mutation	2	30142909	G	A	38	66
UCEC	TCGA-BS-A0UF	ALK	SNP	Silent	2	29432675	G	A	37	48
UCEC	TCGA-BS-A0UV	ALK	SNP	Missense_Mutation	2	29455225	C	A	32	57
UCEC	TCGA-BS-A0UV	ALK	SNP	Silent	2	29456524	G	A	48	54
UCEC	TCGA-BS-A0UV	ALK	SNP	Missense_Mutation	2	29606657	G	T	41	82
KIRC	TCGA-CJ-5682	ALK	SNP	Missense_Mutation	2	29455209	A	G	11	60
HNSC	TCGA-CN-5370	ALK	SNP	Missense_Mutation	2	29462560	C	T	30	99
HNSC	TCGA-CN-6023	ALK	SNP	Silent	2	29456500	A	T	6	44
HNSC	TCGA-CQ-6220	ALK	SNP	Missense_Mutation	2	29474101	C	T	23	99
HNSC	TCGA-CQ-6221	ALK	SNP	Nonsense_Mutation	2	30143411	G	A	46	73
HNSC	TCGA-CR-7373	ALK	SNP	Missense_Mutation	2	29443686	C	G	32	66
HNSC	TCGA-CR-7390	ALK	SNP	Missense_Mutation	2	29606696	C	T	19	58
HNSC	TCGA-CV-5441	ALK	SNP	Missense_Mutation	2	29519791	G	T	46	78
HNSC	TCGA-CV-7100	ALK	DEL	Frame_Shift_Del	2	29451771	CA	-	21	97
KIRC	TCGA-CW-5589	ALK	DEL	Frame_Shift_Del	2	29462601	T	-	56	77
HNSC	TCGA-CX-7082	ALK	SNP	Missense_Mutation	2	29456487	C	A	19	76
UCEC	TCGA-D1-A103	ALK	SNP	Missense_Mutation	2	30142872	C	A	32	59
UCEC	TCGA-D1-A16D	ALK	SNP	Splice_Site	2	29551215	C	T	19	75
UCEC	TCGA-D1-A17Q	ALK	SNP	Missense_Mutation	2	29455216	C	A	32	47
UCEC	TCGA-D1-A17Q	ALK	SNP	Silent	2	29551310	G	T	35	76
BLCA	TCGA-DK-A2I2	ALK	SNP	Missense_Mutation	2	29917721	G	C	43	66
HNSC	TCGA-DQ-7591	ALK	SNP	Missense_Mutation	2	29455179	C	T	23	82
BRCA	TCGA-E2-A1BD	ALK	SNP	Missense_Mutation	2	29455275	C	T	23	96
BLCA	TCGA-G2-A2EO	ALK	SNP	Silent	2	29519819	G	A	37	34